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  Phylogenetic analysis of the origin and spread of plague in Madagascar

Esquivel Gomez, L. R., Savin, C., Andrianaivoarimanana, V., Rahajandraibe, S., Randriantseheno, L. N., Zhou, Z., et al. (2023). Phylogenetic analysis of the origin and spread of plague in Madagascar. PLoS Neglected Tropical Diseases, 17(5): e0010362. doi:10.1371/journal.pntd.0010362.

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 Urheber:
Esquivel Gomez, Luis Roger1, Autor           
Savin, Cyril, Autor
Andrianaivoarimanana, Voahangy, Autor
Rahajandraibe, Soloandry, Autor
Randriantseheno, Lovasoa Nomena, Autor
Zhou, Zhemin, Autor
Kocher, Arthur1, Autor           
Didelot, Xavier, Autor
Rajerison, Minoarisoa, Autor
Kühnert, Denise1, Autor                 
Affiliations:
1Transmission, Infection, Diversification & Evolution Group (tide), Max Planck Institute of Geoanthropology, Max Planck Society, ou_3508663              

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Schlagwörter: Yersinia pestis, Plagues, Phylogenetic analysis, Madagascar, Phylogeography, Single nucleotide polymorphisms, Phylogenetics, Rodents
 Zusammenfassung: In 1991 human cases of plague were reported in the city of Mahajanga, located in the west coast of Madagascar, after 60 years without human cases. Existing evidence suggests that Yersinia pestis, the causal agent of the disease, was reintroduced to the city from a mountainous region known as the Central Highlands. We performed a phylogeographic analysis on 300 Y. pestis genome sequences to determine how many migrations of the pathogen between the two locations were related to the reappearance of the disease in Mahajanga. The results revealed that two migrations from the Central Highlands were the cause of the outbreaks of plague in the west coast of the country during the 1990s. We also aimed to date the emergence of the Y.pestis variant that circulates in Madagascar and is also present in Turkey. To do this, we conducted a molecular dating analysis using an extended data set of 445 sequences, which contained sequences from Turkey and India (the country from which the pathogen was exported to Madagascar for the first time). The analysis indicated that this particular variant emerged in the first decade of the 20th century.

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Sprache(n): eng - English
 Datum: 2022-03-282023-04-032023-05-01
 Publikationsstatus: Online veröffentlicht
 Seiten: 14
 Ort, Verlag, Ausgabe: -
 Inhaltsverzeichnis: Introduction
Methods
- Data set
- Ethics statement
- Sample collection and Y. pestis strain isolation
- Sequence generation
- SNP analysis
- Test for phylogenetic signal
- Phylogeographic analysis of Y. pestis
- Molecular dating analysis
Results
- Migration dynamics of Y. pestis
- Molecular dating of Y. pestis
Discussion
 Art der Begutachtung: Expertenbegutachtung
 Identifikatoren: DOI: 10.1371/journal.pntd.0010362
Anderer: gea0052
 Art des Abschluß: -

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Titel: PLoS Neglected Tropical Diseases
  Kurztitel : PLoS Negl Trop Dis
Genre der Quelle: Zeitschrift
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Seiten: - Band / Heft: 17 (5) Artikelnummer: e0010362 Start- / Endseite: - Identifikator: ISSN: 1935-2735
CoNE: https://pure.mpg.de/cone/journals/resource/1935-2735