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  Regulation by cyclic di-GMP attenuates dynamics and enhances robustness of bimodal curli gene activation in Escherichia coli.

Lamprecht, O., Ratnikava, M., Jacek, P., Kaganovitch, E., Büttner, N., Fritz, K., et al. (2023). Regulation by cyclic di-GMP attenuates dynamics and enhances robustness of bimodal curli gene activation in Escherichia coli. PLOS Genetics, 19(5): e1010750. doi:10.1371/journal.pgen.1010750.

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Lamprecht, Olga1, Autor           
Ratnikava, Maryia1, Autor           
Jacek, Paulina1, Autor           
Kaganovitch, Eugen1, Autor           
Büttner, Nina1, Autor
Fritz, Kirstin1, Autor           
Biazruchka, Ina1, Autor           
Köhler, Robin Clemens2, Autor           
Pietsch, Julian1, Autor           
Sourjik, Victor1, 3, Autor                 
Affiliations:
1Microbial Networks, Department of Systems and Synthetic Microbiology, Max Planck Institute for Terrestrial Microbiology, Max Planck Society, ou_3266309              
2Research Group Mechanisms of Spatial-Organisation, Department of Systems and Synthetic Microbiology, Max Planck Institute for Terrestrial Microbiology, Max Planck Society, ou_3266310              
3Center for Synthetic Microbiology (SYNMIKRO), Philipps-Universität Marburg, ou_persistent22              

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 Zusammenfassung: Curli amyloid fibers are a major constituent of the extracellular biofilm matrix formed by bacteria of the Enterobacteriaceae family. Within Escherichia coli biofilms, curli gene expression is limited to a subpopulation of bacteria, leading to heterogeneity of extracellular matrix synthesis. Here we show that bimodal activation of curli gene expression also occurs in well-mixed planktonic cultures of E. coli, resulting in all-or-none stochastic differentiation into distinct subpopulations of curli-positive and curli-negative cells at the entry into the stationary phase of growth. Stochastic curli activation in individual E. coli cells could further be observed during continuous growth in a conditioned medium in a microfluidic device, which further revealed that the curli-positive state is only metastable. In agreement with previous reports, regulation of curli gene expression by the second messenger c-di-GMP via two pairs of diguanylate cyclase and phosphodiesterase enzymes, DgcE/PdeH and DgcM/PdeR, modulates the fraction of curli-positive cells. Unexpectedly, removal of this regulatory network does not abolish the bimodality of curli gene expression, although it affects dynamics of activation and increases heterogeneity of expression levels among individual cells. Moreover, the fraction of curli-positive cells within an E. coli population shows stronger dependence on growth conditions in the absence of regulation by DgcE/PdeH and DgcM/PdeR pairs. We thus conclude that, while not required for the emergence of bimodal curli gene expression in E. coli, this c-di-GMP regulatory network attenuates the frequency and dynamics of gene activation and increases its robustness to cellular heterogeneity and environmental variation. Copyright: © 2023 Lamprecht et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.

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 Datum: 2023
 Publikationsstatus: Erschienen
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 Identifikatoren: ISI: 37186613
DOI: 10.1371/journal.pgen.1010750
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Titel: PLOS Genetics
  Andere : PLOS Genet.
Genre der Quelle: Zeitschrift
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Ort, Verlag, Ausgabe: San Francisco, CA : Public Library of Science
Seiten: - Band / Heft: 19 (5) Artikelnummer: e1010750 Start- / Endseite: - Identifikator: Anderer: 1553-7404
ISSN: 1553-7390
CoNE: https://pure.mpg.de/cone/journals/resource/1000000000017180