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  Ubiquitination regulates ER-phagy and remodelling of endoplasmic reticulum

González, A., Covarrubias-Pinto, A., Bhaskara, R. M., Glogger, M., Kuncha, S. K., Xavier, A., et al. (2023). Ubiquitination regulates ER-phagy and remodelling of endoplasmic reticulum. Nature, 618(7964), 394-401. doi:10.1038/s41586-023-06089-2.

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González, Alexis1, Autor
Covarrubias-Pinto, Adriana1, Autor
Bhaskara, Ramachandra M.1, 2, 3, Autor                 
Glogger, Marius4, Autor
Kuncha, Santosh K.1, 2, Autor
Xavier, Audrey1, 2, Autor
Seemann, Eric5, Autor
Misra, Mohit1, 2, Autor
Hoffmann, Marina E.1, Autor
Bräuning, Bastian6, Autor
Balakrishnan, Ashwin4, Autor
Qualmann, Britta5, Autor
Dötsch, Volker7, Autor
Schulman, Brenda A.6, Autor
Kessels, Michael M.5, Autor
Hübner, Christian A.8, Autor
Heilemann, Mike4, Autor
Hummer, Gerhard3, 9, Autor                 
Dikić, Ivan1, 2, 10, Autor
Affiliations:
1Institute of Biochemistry II, Faculty of Medicine, Goethe University Frankfurt, Frankfurt am Main, Germany, ou_persistent22              
2Buchmann Institute for Molecular Life Sciences, Goethe University Frankfurt, Frankfurt am Main, Germany, ou_persistent22              
3Department of Theoretical Biophysics, Max Planck Institute of Biophysics, Max Planck Society, ou_2068292              
4Institute of Physical and Theoretical Chemistry, Goethe University Frankfurt, Frankfurt, Germany, ou_persistent22              
5Institute of Biochemistry I, Jena University Hospital, Friedrich Schiller University Jena, Jena, Germany, ou_persistent22              
6Department of Molecular Machines and Signaling, Max Planck Institute of Biochemistry, Martinsried, Germany, ou_persistent22              
7Institute of Biophysical Chemistry, Center for Biomolecular Magnetic Resonance, Goethe University Frankfurt, Frankfurt, Germany, ou_persistent22              
8Institute of Human Genetics, University Hospital Jena, Friedrich Schiller University, Jena, Germany, ou_persistent22              
9Institute of Biophysics, Goethe University Frankfurt, Frankfurt am Main, Germany, ou_persistent22              
10Fraunhofer Institute of Translational Medicine and Pharmacology, Frankfurt am Main, Germany, ou_persistent22              

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Schlagwörter: Autophagy, Computational models, Endoplasmic reticulum, Ubiquitylation
 Zusammenfassung: The endoplasmic reticulum (ER) undergoes continuous remodelling via a selective autophagy pathway, known as ER-phagy1. ER-phagy receptors have a central role in this process2, but the regulatory mechanism remains largely unknown. Here we report that ubiquitination of the ER-phagy receptor FAM134B within its reticulon homology domain (RHD) promotes receptor clustering and binding to lipidated LC3B, thereby stimulating ER-phagy. Molecular dynamics (MD) simulations showed how ubiquitination perturbs the RHD structure in model bilayers and enhances membrane curvature induction. Ubiquitin molecules on RHDs mediate interactions between neighbouring RHDs to form dense receptor clusters that facilitate the large-scale remodelling of lipid bilayers. Membrane remodelling was reconstituted in vitro with liposomes and ubiquitinated FAM134B. Using super-resolution microscopy, we discovered FAM134B nanoclusters and microclusters in cells. Quantitative image analysis revealed a ubiquitin-mediated increase in FAM134B oligomerization and cluster size. We found that the E3 ligase AMFR, within multimeric ER-phagy receptor clusters, catalyses FAM134B ubiquitination and regulates the dynamic flux of ER-phagy. Our results show that ubiquitination enhances RHD functions via receptor clustering, facilitates ER-phagy and controls ER remodelling in response to cellular demands.

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Sprache(n): eng - English
 Datum: 2022-03-292023-04-142023-05-242023-06-08
 Publikationsstatus: Erschienen
 Seiten: 8
 Ort, Verlag, Ausgabe: -
 Inhaltsverzeichnis: -
 Art der Begutachtung: Expertenbegutachtung
 Identifikatoren: DOI: 10.1038/s41586-023-06089-2
BibTex Citekey: gonzalez_ubiquitination_2023
 Art des Abschluß: -

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Titel: Nature
  Kurztitel : Nature
Genre der Quelle: Zeitschrift
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Ort, Verlag, Ausgabe: London : Nature Publishing Group
Seiten: - Band / Heft: 618 (7964) Artikelnummer: - Start- / Endseite: 394 - 401 Identifikator: ISSN: 0028-0836
CoNE: https://pure.mpg.de/cone/journals/resource/954925427238