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  Visualizing incompatibilities in phylogenetic trees using consensus outlines

Huson, D., & Cetinkaya, B. (2023). Visualizing incompatibilities in phylogenetic trees using consensus outlines. Frontiers in Bioinformatics, 3: 1155286. doi:10.3389/fbinf.2023.1155286.

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Huson, DH1, Autor                 
Cetinkaya, B1, Autor           
Affiliations:
1IMPRS From Molecules to Organisms, Max Planck Institute for Biology Tübingen, Max Planck Society, ou_3376132              

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 Zusammenfassung: Phylogenetic analysis frequently leads to the creation of many phylogenetic trees, either from using multiple genes or methods, or through bootstrapping or Bayesian analysis. A consensus tree is often used to summarize what the trees have in common. Consensus networks were introduced to also allow the visualization of the main incompatibilities among the trees. However, in practice, such networks often contain a large number of nodes and edges, and can be non-planar, making them difficult to interpret. Here, we introduce the new concept of a phylogenetic consensus outline, which provides a planar visualization of incompatibilities in the input trees, without the complexities of a consensus network. Furthermore, we present an effective algorithm for its computation. We demonstrate its usage and explore how it compares to other methods on a Bayesian phylogenetic analysis of languages using data from a published database and on multiple gene trees from a published study on water lilies.

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 Datum: 2023-06
 Publikationsstatus: Online veröffentlicht
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 Ort, Verlag, Ausgabe: -
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 Identifikatoren: DOI: 10.3389/fbinf.2023.1155286
PMID: 37325772
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Titel: Frontiers in Bioinformatics
  Kurztitel : Front Bioinform
Genre der Quelle: Zeitschrift
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Ort, Verlag, Ausgabe: Lausanne, Switzerland : Frontiers Media
Seiten: 7 Band / Heft: 3 Artikelnummer: 1155286 Start- / Endseite: - Identifikator: ISSN: 2673-7647
CoNE: https://pure.mpg.de/cone/journals/resource/2673-7647