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  Bacterial histone HBb from Bdellovibrio bacteriovorus compacts DNA by bending

Hu, Y., Schwab, S., Deiss, S., Escudeiro, P., Joiner, J., Hartmann, M., et al. (submitted). Bacterial histone HBb from Bdellovibrio bacteriovorus compacts DNA by bending.

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 Creators:
Hu, Y1, 2, Author           
Schwab, S, Author
Deiss, S1, 2, Author           
Escudeiro, P2, 3, Author           
Joiner, JD2, 4, Author                 
Hartmann, MD2, 4, Author                 
Lupas, Andrei2, Author                 
Hernandez, B1, 2, Author                 
Alva, V2, 3, Author                 
Dame, RT, Author
Affiliations:
1Conservation of Protein Structure and Function Group, Department Protein Evolution, Max Planck Institute for Biology Tübingen, Max Planck Society, ou_3477388              
2Department Protein Evolution, Max Planck Institute for Biology Tübingen, Max Planck Society, ou_3371683              
3Protein Bioinformatics Group, Department Protein Evolution, Max Planck Institute for Biology Tübingen, Max Planck Society, ou_3477399              
4Molecular Recognition and Catalysis Group, Department Protein Evolution, Max Planck Institute for Biology Tübingen, Max Planck Society, ou_3477391              

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 Abstract: Histones are essential for genome compaction and transcription regulation in eukaryotes, where they assemble into octamers to form the nucleosome core. In contrast, archaeal histones assemble into dimers that form hypernucleosomes upon DNA binding. Although histone homologs have recently been identified in bacteria, their DNA-binding characteristics remain largely unexplored. Our study reveals that the bacterial histone HBb is indispensable for the survival of Bdellovibrio bacteriovorus, suggesting critical roles in DNA organization and gene regulation. We also elucidate the crystal structure of the HBb dimer at 1.06 Å resolution and employ various biophysico-chemical approaches to show its ability to bind and compact DNA in a sequence-independent manner. This binding induces DNA bending, similar to that observed with bacterial HU/IHF family proteins. Finally, using DNA affinity purification and sequencing, we reveal that HBb binds along the entire genomic DNA of B. bacteriovorus without sequence specificity. These unique DNA-binding properties of bacterial histones, distinct from their archaeal and eukaryotic counterparts, highlight the diverse roles that histones can play in DNA organization across the domains of life.

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 Dates: 2023-09
 Publication Status: Submitted
 Pages: -
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 Identifiers: DOI: 10.1101/2023.02.26.530074
 Degree: -

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