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  Interaction-motif-based classification of self-organizing metabolic cycles

Ouazan-Reboul, V., Golestanian, R., & Agudo-Canalejo, J. (2023). Interaction-motif-based classification of self-organizing metabolic cycles. New Journal of Physics, 25: 103013. doi:10.1088/1367-2630/acfdc2.

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Ouazan-Reboul_2023_New_J._Phys._25_103013.pdf (Publisher version), 929KB
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Ouazan-Reboul, Vincent1, Author           
Golestanian, Ramin1, Author                 
Agudo-Canalejo, Jaime1, Author                 
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1Department of Living Matter Physics, Max Planck Institute for Dynamics and Self-Organization, Max Planck Society, ou_2570692              

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 Abstract: Particles that are catalytically-active and chemotactic can interact through the concentration fields upon which they act, which in turn may lead to wide-scale spatial self-organization. When these active particles interact through several fields, these interactions gain an additional structure, which can result in new forms of collective behavior. Here, we study a mixture of active species which catalyze the conversion of a substrate chemical into a product chemical, and chemotax in concentration gradients of both substrate and product. Such species develop non-reciprocal, specific interactions that we coarse-grain into attractive and repulsive, which can lead to a potentially complex interaction network. We consider the particular case of a metabolic cycle of three species, each of which interacts with itself and both other species in the cycle. We find that the stability of a cycle of species that only chemotax in gradients of their substrate is piloted by a set of two parameter-free conditions, which we use to classify the low number of corresponding interaction networks. In the more general case of substrate- and product-chemotactic species, we can derive a set of two high-dimensional stability conditions, which can be used to classify the stability of all the possible interaction networks based on the self- and pair-interaction motifs they contain. The classification scheme that we introduce can help guide future studies on the dynamics of complex interaction networks and explorations of the corresponding large parameter spaces in such metabolically active complex systems.

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Language(s): eng - English
 Dates: 2023-10-092023-10
 Publication Status: Issued
 Pages: -
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 Rev. Type: Peer
 Identifiers: DOI: 10.1088/1367-2630/acfdc2
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Title: New Journal of Physics
  Other : New journal of physics : the open-access journal for physics
  Abbreviation : New J. Phys.
Source Genre: Journal
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Publ. Info: Bristol : IOP Publishing
Pages: - Volume / Issue: 25 Sequence Number: 103013 Start / End Page: - Identifier: ISSN: 1367-2630
CoNE: https://pure.mpg.de/cone/journals/resource/954926913666