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  Peptide mass fingerprinting as a tool to assess micromammal biodiversity in Pleistocene South Africa: the case of Klipdrift Shelter

Nel, T. H., Peters, C., Richter, K. K., Henshilwood, C., van Niekerk, K., & Douka, K. (2023). Peptide mass fingerprinting as a tool to assess micromammal biodiversity in Pleistocene South Africa: the case of Klipdrift Shelter. Quaternary Science Reviews, 322: 108380, pp. 1-14. doi:10.1016/j.quascirev.2023.108380.

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 Creators:
Nel, Turid Hillestad, Author
Peters, Carli1, Author           
Richter, Kristine Korzow, Author
Henshilwood, Christopher, Author
van Niekerk, Karen, Author
Douka, Katerina, Author
Affiliations:
1Department of Archaeology, Max Planck Institute of Geoanthropology, Max Planck Society, ou_3398738              

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Free keywords: Zooarchaeology by mass spectrometry (ZooMS), Micromammals, Rodents, Middle stone age, South Africa
 Abstract: Remains of small mammals from archaeological sites are often used as palaeoenvironmental proxies in the reconstruction of past environments. Yet, identification of micromammals to species-level based on morphological traits is often difficult due to fragmentation of diagnostic skeletal elements. Here we test the potential of Zooarchaeology by Mass Spectrometry (ZooMS) as a tool for the taxonomic identification of micromammal remains from Middle Stone Age (MSA) sequences in South Africa. ZooMS peptide markers are first established for 14 extant micromammal species present in the region. These novel peptide markers are then used to identify micromammal bone remains from the MSA levels of Klipdrift Shelter (c. 72–51 ka), De Hoop Nature Reserve, South Africa. Our study shows that collagen preservation in micromammal bones from MSA contexts is sufficient for successful ZooMS analysis. To our knowledge, these results represent the oldest material successfully analysed with ZooMS from an African context. The peptide markers developed as part of this study can be used to characterize a larger number of micromammal assemblages. This holds significant promise for the future application of ZooMS to prehistoric material in South Africa and elsewhere in the continent.

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Language(s): eng - English
 Dates: 2023-03-292023-10-242023-11-182023-12-15
 Publication Status: Issued
 Pages: 14
 Publishing info: -
 Table of Contents: 1. Introduction
1.1. Background
1.2. Sites
1.2.1. Archaeological site
1.2.2. Modern collection sites
2. Material and methods
2.1. Materials
2.1.1. Modern references
2.1.2. Archaeological specimens
2.2. Collagen extraction
2.3. MALDI-TOF-MS
2.4. LC-MS/MS
2.5. Identification and confirmation of biomarkers
3. Results
3.1. Taxonomic resolution using ZooMS
3.2. Notes on particular markers
3.3. ZooMS analysis at Klipdrift shelter
4. Discussion
4.1. Peptide marker development for South African micromammals
4.2. Insights at KDS
4.3. ZooMS as a zooarchaeological tool for micromammal assemblages
5. Conclusions
 Rev. Type: Peer
 Identifiers: DOI: 10.1016/j.quascirev.2023.108380
Other: gea0138
 Degree: -

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Title: Quaternary Science Reviews
Source Genre: Journal
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Publ. Info: Oxford : Pergamon
Pages: - Volume / Issue: 322 Sequence Number: 108380 Start / End Page: 1 - 14 Identifier: ISSN: 0277-3791
CoNE: https://pure.mpg.de/cone/journals/resource/954925505268