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  Genome mining reveals novel biosynthetic gene clusters in entomopathogenic bacteria

Meesil, W., Muangpat, P., Sitthisak, S., Rattanarojpong, T., Chantratita, N., Machado, R. A. R., et al. (2023). Genome mining reveals novel biosynthetic gene clusters in entomopathogenic bacteria. Scientific Reports, 13: 20764. doi:10.1038/s41598-023-47121-9.

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https://doi.org/10.1038/s41598-023-47121-9 (Verlagsversion)
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Meesil, Wipanee1, Autor
Muangpat, Paramaporn1, Autor
Sitthisak, Sutthirat1, Autor
Rattanarojpong, Triwit1, Autor
Chantratita, Narisara1, Autor
Machado, Ricardo A. R.1, Autor
Shi, Yi-Ming2, Autor           
Bode, Helge B.3, 4, 5, 6, 7, Autor                 
Vitta, Apichat1, Autor
Thanwisai, Aunchalee1, Autor
Affiliations:
1external, ou_persistent22              
2Department of Natural Products in Organismic Interactions, Max Planck Institute for Terrestrial Microbiology, Max Planck Society, ou_3266281              
3Natural Product Function and Engineering, Department of Natural Products in Organismic Interactions, Max Planck Institute for Terrestrial Microbiology, Max Planck Society, ou_3266308              
4Senckenberg Gesellschaft für Naturforschung, Frankfurt, ou_persistent22              
5Molecular Biotechnology, Department of Biosciences, Goethe University Frankfurt, Frankfurt, Germany, External Organizations, ou_421891              
6Chemical Biology, Department of Chemistry, Philipps University Marburg, Marburg, Germany, ou_persistent22              
7Center for Synthetic Microbiology (SYNMIKRO), Philipps University Marburg, Germany, ou_persistent22              

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 Zusammenfassung: The discovery of novel bioactive compounds produced by microorganisms holds significant potential for the development of therapeutics and agrochemicals. In this study, we conducted genome mining to explore the biosynthetic potential of entomopathogenic bacteria belonging to the genera Xenorhabdus and Photorhabdus. By utilizing next-generation sequencing and bioinformatics tools, we identified novel biosynthetic gene clusters (BGCs) in the genomes of the bacteria, specifically plu00736 and plu00747. These clusters were identified as unidentified non-ribosomal peptide synthetase (NRPS) and unidentified type I polyketide synthase (T1PKS) clusters. These BGCs exhibited unique genetic architecture and encoded several putative enzymes and regulatory elements, suggesting its involvement in the synthesis of bioactive secondary metabolites. Furthermore, comparative genome analysis revealed that these BGCs were distinct from previously characterized gene clusters, indicating the potential for the production of novel compounds. Our findings highlighted the importance of genome mining as a powerful approach for the discovery of biosynthetic gene clusters and the identification of novel bioactive compounds. Further investigations involving expression studies and functional characterization of the identified BGCs will provide valuable insights into the biosynthesis and potential applications of these bioactive compounds.

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Sprache(n): eng - English
 Datum: 2023
 Publikationsstatus: Erschienen
 Seiten: -
 Ort, Verlag, Ausgabe: -
 Inhaltsverzeichnis: -
 Art der Begutachtung: Expertenbegutachtung
 Identifikatoren: URI: https://doi.org/10.1038/s41598-023-47121-9
Anderer: Meesil2023
DOI: 10.1038/s41598-023-47121-9
 Art des Abschluß: -

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Titel: Scientific Reports
  Kurztitel : Sci. Rep.
Genre der Quelle: Zeitschrift
 Urheber:
Affiliations:
Ort, Verlag, Ausgabe: London, UK : Nature Publishing Group
Seiten: - Band / Heft: 13 Artikelnummer: 20764 Start- / Endseite: - Identifikator: ISSN: 2045-2322
CoNE: https://pure.mpg.de/cone/journals/resource/2045-2322