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  Engineering a synthetic energy-efficient formaldehyde assimilation cycle in Escherichia coli

Wu, T., Gómez-Coronado, P. A., Kubis, A., Lindner, S. N., Marlière, P., Erb, T. J., et al. (2023). Engineering a synthetic energy-efficient formaldehyde assimilation cycle in Escherichia coli. Nature Communications, 14(1): 8490. doi:10.1038/s41467-023-44247-2.

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https://doi.org/10.1038/s41467-023-44247-2 (Publisher version)
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 Creators:
Wu, Tong1, Author
Gómez-Coronado, Paul A.1, 2, Author
Kubis, Armin1, Author
Lindner, Steffen N.1, Author
Marlière, Philippe1, Author
Erb, Tobias J.2, Author                 
Bar-Even, Arren1, Author
He, Hai1, 2, Author           
Affiliations:
1external, ou_persistent22              
2Understanding and Building Metabolism, Department of Biochemistry and Synthetic Metabolism, Max Planck Institute for Terrestrial Microbiology, Max Planck Society, ou_3266303              

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 Abstract: One-carbon (C1) substrates, such as methanol or formate, are attractive feedstocks for circular bioeconomy. These substrates are typically converted into formaldehyde, serving as the entry point into metabolism. Here, we design an erythrulose monophosphate (EuMP) cycle for formaldehyde assimilation, leveraging a promiscuous dihydroxyacetone phosphate dependent aldolase as key enzyme. In silico modeling reveals that the cycle is highly energy-efficient, holding the potential for high bioproduct yields. Dissecting the EuMP into four modules, we use a stepwise strategy to demonstrate in vivo feasibility of the modules in E. coli sensor strains with sarcosine as formaldehyde source. From adaptive laboratory evolution for module integration, we identify key mutations enabling the accommodation of the EuMP reactions with endogenous metabolism. Overall, our study demonstrates the proof-of-concept for a highly efficient, new-to-nature formaldehyde assimilation pathway, opening a way for the development of a methylotrophic platform for a C1-fueled bioeconomy in the future.

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Language(s): eng - English
 Dates: 2023
 Publication Status: Issued
 Pages: -
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 Table of Contents: -
 Rev. Type: Peer
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Title: Nature Communications
Source Genre: Journal
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Pages: 8490 Volume / Issue: 14 (1) Sequence Number: 8490 Start / End Page: - Identifier: ISBN: 2041-1723