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  netMUG: a novel network-guided multi-view clustering workflow for dissecting genetic and facial heterogeneity

Li, Z., Melograna, F., Hoskens, H., Duroux, D., Marazita, M. L., Walsh, S., et al. (2023). netMUG: a novel network-guided multi-view clustering workflow for dissecting genetic and facial heterogeneity. FRONTIERS IN GENETICS, 14: 1286800. doi:10.3389/fgene.2023.1286800.

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Li, Zuqi, Autor
Melograna, Federico, Autor
Hoskens, Hanne, Autor
Duroux, Diane, Autor
Marazita, Mary L., Autor
Walsh, Susan, Autor
Weinberg, Seth M., Autor
Shriver, Mark D., Autor
Mueller-Myhsok, Bertram1, Autor           
Claes, Peter, Autor
Van Steen, Kristel, Autor
Affiliations:
1RG Statistical Genetics, Max Planck Institute of Psychiatry, Max Planck Society, ou_2040288              

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 Zusammenfassung: Introduction: Multi-view data offer advantages over single-view data for characterizing individuals, which is crucial in precision medicine toward personalized prevention, diagnosis, or treatment follow-up.Methods: Here, we develop a network-guided multi-view clustering framework named netMUG to identify actionable subgroups of individuals. This pipeline first adopts sparse multiple canonical correlation analysis to select multi-view features possibly informed by extraneous data, which are then used to construct individual-specific networks (ISNs). Finally, the individual subtypes are automatically derived by hierarchical clustering on these network representations.Results: We applied netMUG to a dataset containing genomic data and facial images to obtain BMI-informed multi-view strata and showed how it could be used for a refined obesity characterization. Benchmark analysis of netMUG on synthetic data with known strata of individuals indicated its superior performance compared with both baseline and benchmark methods for multi-view clustering. The clustering derived from netMUG achieved an adjusted Rand index of 1 with respect to the synthesized true labels. In addition, the real-data analysis revealed subgroups strongly linked to BMI and genetic and facial determinants of these subgroups.Discussion: netMUG provides a powerful strategy, exploiting individual-specific networks to identify meaningful and actionable strata. Moreover, the implementation is easy to generalize to accommodate heterogeneous data sources or highlight data structures.

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 Datum: 2023
 Publikationsstatus: Online veröffentlicht
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 Identifikatoren: ISI: 001127220800001
DOI: 10.3389/fgene.2023.1286800
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Titel: FRONTIERS IN GENETICS
Genre der Quelle: Zeitschrift
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Ort, Verlag, Ausgabe: -
Seiten: - Band / Heft: 14 Artikelnummer: 1286800 Start- / Endseite: - Identifikator: -