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  Time-shifted expression of acetoclastic and methylotrophic methanogenesis by a single Methanosarcina genomospecies predominates the methanogen dynamics in Philippine rice field soil

Li, X., Bei, Q., Rabiei Nematabad, M., Peng, J., & Liesack, W. (2024). Time-shifted expression of acetoclastic and methylotrophic methanogenesis by a single Methanosarcina genomospecies predominates the methanogen dynamics in Philippine rice field soil. Microbiome, 12: 39. doi:10.1186/s40168-023-01739-z.

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Item Permalink: https://hdl.handle.net/21.11116/0000-000E-7CAE-4 Version Permalink: https://hdl.handle.net/21.11116/0000-000F-4807-9
Genre: Journal Article

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Locator:
https://doi.org/10.1186/s40168-023-01739-z (Publisher version)
Description:
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OA-Status:
Gold

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 Creators:
Li, Xin1, Author           
Bei, Qicheng1, Author           
Rabiei Nematabad, Mehrdad2, Author           
Peng, Jingjing3, Author
Liesack, Werner4, Author                 
Affiliations:
1Department-Independent Research Group Methanotrophic Bacteria, and Environmental Genomics/Transcriptomics, Max Planck Institute for Terrestrial Microbiology, Max Planck Society, ou_3266274              
2IMPRS-Mic, Max Planck Institute for Terrestrial Microbiology, Max Planck Society, ou_3266296              
3external, ou_persistent22              
4Department-Independent Research Group Methanotrophic Bacteria, and Environmental Genomics/Transcriptomics, Alumni, Max Planck Institute for Terrestrial Microbiology, Max Planck Society, ou_3484073              

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 Abstract: The final step in the anaerobic decomposition of biopolymers is methanogenesis. Rice field soils are a major anthropogenic source of methane, with straw commonly used as a fertilizer in rice farming. Here, we aimed to decipher the structural and functional responses of the methanogenic community to rice straw addition during an extended anoxic incubation (120 days) of Philippine paddy soil. The research combined process measurements, quantitative real-time PCR and RT-PCR of particular biomarkers (16S rRNA, mcrA), and meta-omics (environmental genomics and transcriptomics).

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Language(s): eng - English
 Dates: 2023-12-182024-02-26
 Publication Status: Issued
 Pages: -
 Publishing info: -
 Table of Contents: -
 Rev. Type: Peer
 Identifiers: URI: https://doi.org/10.1186/s40168-023-01739-z
Other: Li2024
DOI: 10.1186/s40168-023-01739-z
 Degree: -

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Funding organization : Max Planck Society
Project name : -
Grant ID : -
Funding program : Collaborative Research Center SFB 987
Funding organization : Deutsche Forschungsgemeinschaft (DFG)
Project name : -
Grant ID : 41977038
Funding program : -
Funding organization : National Nature Science Foundation of China
Project name : -
Grant ID : -
Funding program : Open access
Funding organization : DEAL

Source 1

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Title: Microbiome
Source Genre: Journal
 Creator(s):
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Publ. Info: United Kingdom : BioMed Central
Pages: - Volume / Issue: 12 Sequence Number: 39 Start / End Page: - Identifier: Other: 2049-2618
CoNE: https://pure.mpg.de/cone/journals/resource/2049-2618