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  Integrating single-cell imaging and RNA sequencing datasets links differentiation and morphogenetic dynamics of human pancreatic endocrine progenitors.

Beydag-Tasöz, B. S., D'Costa, J. V., Hersemann, L., Lee, B. H., Luppino, F., Kim, Y. H., et al. (2023). Integrating single-cell imaging and RNA sequencing datasets links differentiation and morphogenetic dynamics of human pancreatic endocrine progenitors. Developmental cell, 58(21), 2292-2308. doi:10.1016/j.devcel.2023.07.019.

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Beydag-Tasöz, Belin Selcen1, Autor           
D'Costa, Joyson Verner, Autor
Hersemann, Lena, Autor
Lee, Byung Ho, Autor
Luppino, Federica1, Autor           
Kim, Yung Hae1, Autor           
Zechner, Christoph1, Autor           
Grapin-Botton, Anne1, Autor           
Affiliations:
1Max Planck Institute for Molecular Cell Biology and Genetics, Max Planck Society, ou_2340692              

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 Zusammenfassung: Basic helix-loop-helix genes, particularly proneural genes, are well-described triggers of cell differentiation, yet information on their dynamics is limited, notably in human development. Here, we focus on Neurogenin 3 (NEUROG3), which is crucial for pancreatic endocrine lineage initiation. By monitoring both NEUROG3 gene expression and protein in single cells using a knockin dual reporter in 2D and 3D models of human pancreas development, we show an approximately 2-fold slower expression of human NEUROG3 than that of the mouse. We observe heterogeneous peak levels of NEUROG3 expression and reveal through long-term live imaging that both low and high NEUROG3 peak levels can trigger differentiation into hormone-expressing cells. Based on fluorescence intensity, we statistically integrate single-cell transcriptome with dynamic behaviors of live cells and propose a data-mapping methodology applicable to other contexts. Using this methodology, we identify a role for KLK12 in motility at the onset of NEUROG3 expression.

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 Datum: 2023-11-06
 Publikationsstatus: Erschienen
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 Ort, Verlag, Ausgabe: -
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 Art der Begutachtung: -
 Identifikatoren: DOI: 10.1016/j.devcel.2023.07.019
Anderer: cbg-8607
PMID: 37591246
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Titel: Developmental cell
  Andere : Dev Cell
Genre der Quelle: Zeitschrift
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Ort, Verlag, Ausgabe: -
Seiten: - Band / Heft: 58 (21) Artikelnummer: - Start- / Endseite: 2292 - 2308 Identifikator: -