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  Revealing reaction intermediates in one-carbon elongation ThDP/CoA dependent enzyme family

Joachimiak, A., Kim, Y., Lee, S. H., Gade, P., Nattermann, M., Maltseva, N., et al. (2024). Revealing reaction intermediates in one-carbon elongation ThDP/CoA dependent enzyme family. Research Square.

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Joachimiak, Andrzej1, Autor
Kim, Youngchang1, Autor
Lee, Seung Hwan1, Autor
Gade, Priyanka1, Autor
Nattermann, Maren2, Autor           
Maltseva, Natalia1, Autor
Endres, Michael1, Autor
Chen, Jing1, Autor
Wichmann, Philipp2, Autor           
Hu, Yang1, Autor
Marchal, Daniel G.2, Autor           
Yoshikuni, Yasuo1, Autor
Erb, Tobias J.2, Autor                 
Gonzalez, Ramon1, Autor
Michalska, Karolina1, Autor
Affiliations:
1external, ou_persistent22              
2Understanding and Building Metabolism, Department of Biochemistry and Synthetic Metabolism, Max Planck Institute for Terrestrial Microbiology, Max Planck Society, ou_3266303              

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 Zusammenfassung: <p>2-Hydroxyacyl-CoA lyase/synthase (HACL/S) is a thiamine diphosphate (ThDP)-dependent versatile enzyme originally discovered in the mammalian α-oxidation pathway. HACL/S natively cleaves 2-hydroxyacyl-CoAs and, in its reverse direction, condenses formyl-CoA with aldehydes or ketones. The one-carbon elongation biochemistry based on HACL/S has enabled the use of molecules derived from greenhouse gases as biomanufacturing feedstocks. We investigated several HACL/S family members with high activity in the condensation of formyl-CoA and aldehydes, and distinct chain-length specificities and kinetic parameters. Our analysis revealed the structures of enzymes in complex with acyl-CoA substrates and products, several covalent transition states, bound ThDP and ADP, as well as a previously unseen C-terminal active site region. One of these new states corresponds to the intermediary α-carbanion with ThDP covalently attached to formyl- CoA. This research distinguishes HACL/S from related sub-families and identifies key residues involved in substrate binding and catalysis. These findings expand our knowledge of acyloincondensation biochemistry and offer new prospects for biocatalysis using carbon elongation.</p>

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Sprache(n): eng - English
 Datum: 2024-03-24
 Publikationsstatus: Erschienen
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 Art der Begutachtung: Keine Begutachtung
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Titel: Research Square
  Kurztitel : Res Sq
Genre der Quelle: Zeitschrift
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Seiten: - Band / Heft: - Artikelnummer: - Start- / Endseite: - Identifikator: ISSN: 2693-5015
CoNE: https://pure.mpg.de/cone/journals/resource/2693-5015