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  Poseidon – A framework for archaeogenetic human genotype data management

Schmid, C., Ghalichi, A., Lamnidis, T. C., Aththanayaka Mudiyanselage, D. B., Haak, W., & Schiffels, S. (2024). Poseidon – A framework for archaeogenetic human genotype data management. bioRxiv: the preprint server for biology. doi:10.1101/2024.04.12.589180.

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Preprint
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 Creators:
Schmid, Clemens1, Author                 
Ghalichi, Ayshin1, Author           
Lamnidis, Thiseas Christos1, Author                 
Aththanayaka Mudiyanselage, Dhananjaya B.1, Author                 
Haak, Wolfgang1, Author                 
Schiffels, Stephan1, Author                 
Affiliations:
1Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society, ou_3222712              

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Free keywords: ancient DNA, data management, FAIR data
 Abstract: The study of ancient human genomes, archaeo- or palaeogenetics, has accelerated in the last ten years, with now thousands of new ancient genomes being released each year. Operating at the interface of genetics, anthro-pology and archaeology, this data includes features from all three fields, including rich meta- and context-data, for example regarding spatiotemporal provenience. While archives and standards for genetic sequencing data al-ready exist, no such infrastructure exists for combined genetic and meta-data that could ensure FAIR principles across the field. Here, we present Poseidon, a framework for open and FAIR data handling in archaeogenetics, including a specified package format, software tools, and public, community-maintained online archives. Poseidon emphasises human- and machine-readable data storage, the development of convenient and interoperable command line software, and a high degree of source granularity to elevate the original data publication to the main unit of long-term curation.

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Language(s): eng - English
 Dates: 2024-04-16
 Publication Status: Published online
 Pages: -
 Publishing info: -
 Table of Contents: -
 Rev. Type: Peer
 Identifiers: DOI: 10.1101/2024.04.12.589180
 Degree: -

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Title: bioRxiv : the preprint server for biology
  Abbreviation : bioRxiv
Source Genre: Journal
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