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  Sequential trypsin and ProAlanase digestions unearth immunological protein biomarkers shrouded by skeletal collagen

Wilkin, S., Lanigan, L. T., Montes, N., Sharma, M., Avanzi, C., Sejdiu, D., et al. (2024). Sequential trypsin and ProAlanase digestions unearth immunological protein biomarkers shrouded by skeletal collagen. iScience, 27(5): 109663. doi:10.1016/j.isci.2024.109663.

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(last seen: April 2024)
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 Creators:
Wilkin, Shevan1, Author           
Lanigan, Liam T., Author
Montes, Nuria, Author
Sharma, Mukul, Author
Avanzi, Charlotte, Author
Sejdiu, Donikë, Author
Majander, Kerttu, Author
Pfrengle, Saskia, Author
Chiang, Yun, Author
Kunz, Laura, Author
Dittmann, Antje, Author
Rühli, Frank, Author
Singh, Pushpendra, Author
Coll, Maria Fontanals, Author
Collins, Matthew J., Author
Taurozzi, Alberto J., Author
Schuenemann, Verena J., Author
Affiliations:
1Department of Archaeology, Max Planck Institute of Geoanthropology, Max Planck Society, ou_3398738              

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Free keywords: Biochemistry, Biochemistry applications, Biochemistry methods, Medical biochemistry, Proteomics
 Abstract: This study investigates the efficacy of proteomic analysis of human remains to identify active infections in the past through the detection of pathogens and the host response to infection. We advance leprosy as a case study due to the sequestering of sufferers in leprosaria and the suggestive skeletal lesions that can result from the disease. Here we present a sequential enzyme extraction protocol, using trypsin followed by ProAlanase, to reduce the abundance of collagen peptides and in so doing increase the detection of non-collagenous proteins. Through our study of five individuals from an 11th to 18th century leprosarium, as well as four from a contemporaneous non-leprosy associated cemetery in Barcelona, we show that samples from 2 out of 5 leprosarium individuals extracted with the sequential digestion methodology contain numerous host immune proteins associated with modern leprosy. In contrast, individuals from the non-leprosy associated cemetery and all samples extracted with a trypsin-only protocol did not. Through this study, we advance a palaeoproteomic methodology to gain insights into the health of archaeological individuals and take a step toward a proteomics-based method to study immune responses in past populations.

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Language(s): eng - English
 Dates: 2023-03-172024-04-022024-04-032024-05-17
 Publication Status: Issued
 Pages: 18
 Publishing info: -
 Table of Contents: Introduction
Results
Sampling and M. leprae screening of non-leprosarium individuals
M. leprae genomes recovered from leprosarium individuals, but not from non-leprosarium individuals
More non-collagenous proteins recovered with trypsin/ProAlanase than trypsin alone
Bone and dentine samples contain similar immune proteins
Pellet and supernatant fractions contain similar number of immune-related proteins
SDS and GuHCl protocols result in similar overall and immune protein recovery
More immune proteins recovered from leprosarium individuals
Discussion
Conclussion
 Rev. Type: Peer
 Identifiers: DOI: 10.1016/j.isci.2024.109663
Other: gea0225
 Degree: -

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Title: iScience
Source Genre: Journal
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Publ. Info: Amsterdam ; Bosten ; London ; New York ; Oxford ; Paris ; Philadelphia ; San Diego ; St. Louis : Elsevier
Pages: - Volume / Issue: 27 (5) Sequence Number: 109663 Start / End Page: - Identifier: ISSN: 2589-0042
CoNE: https://pure.mpg.de/cone/journals/resource/2589-0042