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  Biological computations: Limitations of attractor-based formalisms and the need for transients

Koch, D., Nandan, A. P., Ramesan, G., & Koseska, A. (2024). Biological computations: Limitations of attractor-based formalisms and the need for transients. Biochemical and Biophysical Research Communications, 720: 150069. doi:10.1016/j.bbrc.2024.150069.

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2024
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https://arxiv.org/abs/2404.10369 (Preprint)
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 Creators:
Koch, Daniel1, Author                 
Nandan, Akhilesh P.1, Author                 
Ramesan, Gayathri1, Author                 
Koseska, Aneta1, Author                 
Affiliations:
1Lise Meitner Group Cellular Computations and Learning, Max Planck Institute for Neurobiology of Behavior – caesar, Max Planck Society, ou_3361763              

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Free keywords: Mesh Terms: Animals; Computer Simulation; Humans; Models, Biological; Models, Neurological; Nerve Net / physiology; Neurons* / physiology Signal Transduction
 Abstract: Living systems, from single cells to higher vertebrates, receive a continuous stream of non-stationary inputs that they sense, for e.g. via cell surface receptors or sensory organs. By integrating these time-varying, multi-sensory, and often noisy information with memory using complex molecular or neuronal networks, they generate a variety of responses beyond simple stimulus-response association, including avoidance behavior, life-long-learning or social interactions. In a broad sense, these processes can be understood as a type of biological computation. Taking as a basis generic features of biological computations, such as real-time responsiveness or robustness and flexibility of the computation, we highlight the limitations of the current attractor-based framework for understanding computations in biological
systems. We argue that frameworks based on transient dynamics away from attractors are better suited for the description of computations performed by neuronal and signaling networks. In particular, we discuss how quasi-stable transient dynamics from ghost states that emerge at criticality have a promising potential for developing an integrated framework of computations, that can help us understand how living system actively process information and learn from their continuously changing environment.

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Language(s): eng - English
 Dates: 2024-05-112024-08-06
 Publication Status: Issued
 Pages: -
 Publishing info: -
 Table of Contents: -
 Rev. Type: Peer
 Identifiers: DOI: 10.1016/j.bbrc.2024.150069
PMID: 38754165
 Degree: -

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Title: Biochemical and Biophysical Research Communications
  Abbreviation : Biochem Biophys Res Commun
Source Genre: Journal
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Publ. Info: Orlando, Fla. : Academic Press
Pages: - Volume / Issue: 720 Sequence Number: 150069 Start / End Page: - Identifier: ISSN: 0006-291X
CoNE: https://pure.mpg.de/cone/journals/resource/954922652205_1