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  Revealing reaction intermediates in one-carbon elongation by thiamine diphosphate/CoA-dependent enzyme family

Kim, Y., Lee, S. H., Gade, P., Nattermann, M., Maltseva, N., Endres, M., et al. (2024). Revealing reaction intermediates in one-carbon elongation by thiamine diphosphate/CoA-dependent enzyme family. Communications Chemistry, 7(1). doi:10.1038/s42004-024-01242-y.

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Genre: Zeitschriftenartikel

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https://doi.org/10.1038/s42004-024-01242-y (Verlagsversion)
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 Urheber:
Kim, Youngchang1, Autor
Lee, Seung Hwan1, Autor
Gade, Priyanka1, Autor
Nattermann, Maren2, Autor           
Maltseva, Natalia1, Autor
Endres, Michael1, Autor
Chen, Jing1, Autor
Wichmann, Philipp2, Autor           
Hu, Yang1, Autor
Marchal, Daniel G.2, Autor           
Yoshikuni, Yasuo1, Autor
Erb, Tobias J.2, Autor                 
Gonzalez, Ramon1, Autor
Michalska, Karolina1, Autor
Joachimiak, Andrzej1, Autor
Affiliations:
1external, ou_persistent22              
2Cellular Operating Systems, Department of Biochemistry and Synthetic Metabolism, Max Planck Institute for Terrestrial Microbiology, Max Planck Society, ou_3266303              

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 Zusammenfassung: 2-Hydroxyacyl-CoA lyase/synthase (HACL/S) is a thiamine diphosphate (ThDP)-dependent versatile enzyme originally discovered in the mammalian α-oxidation pathway. HACL/S natively cleaves 2-hydroxyacyl-CoAs and, in its reverse direction, condenses formyl-CoA with aldehydes or ketones. The one-carbon elongation biochemistry based on HACL/S has enabled the use of molecules derived from greenhouse gases as biomanufacturing feedstocks. We investigated several HACL/S family members with high activity in the condensation of formyl-CoA and aldehydes, and distinct chain-length specificities and kinetic parameters. Our analysis revealed the structures of enzymes in complex with acyl-CoA substrates and products, several covalent intermediates, bound ThDP and ADP, as well as the C-terminal active site region. One of these observed states corresponds to the intermediary α–carbanion with hydroxymethyl-CoA covalently attached to ThDP. This research distinguishes HACL/S from related sub-families and identifies key residues involved in substrate binding and catalysis. These findings expand our knowledge of acyloin-condensation biochemistry and offer attractive prospects for biocatalysis using carbon elongation.

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Sprache(n): eng - English
 Datum: 2024-05-212024-07-102024-07-21
 Publikationsstatus: Erschienen
 Seiten: -
 Ort, Verlag, Ausgabe: -
 Inhaltsverzeichnis: -
 Art der Begutachtung: Expertenbegutachtung
 Identifikatoren: URI: https://doi.org/10.1038/s42004-024-01242-y
Anderer: Kim2024
DOI: 10.1038/s42004-024-01242-y
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Titel: Communications Chemistry
  Kurztitel : Commun. Chem.
Genre der Quelle: Zeitschrift
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Ort, Verlag, Ausgabe: London : Springer Nature
Seiten: 160 Band / Heft: 7 (1) Artikelnummer: - Start- / Endseite: - Identifikator: ISSN: 2399-3669
CoNE: https://pure.mpg.de/cone/journals/resource/2399-3669