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  Revealing reaction intermediates in one-carbon elongation by thiamine diphosphate/CoA-dependent enzyme family

Kim, Y., Lee, S. H., Gade, P., Nattermann, M., Maltseva, N., Endres, M., et al. (2024). Revealing reaction intermediates in one-carbon elongation by thiamine diphosphate/CoA-dependent enzyme family. Communications Chemistry, 7(1). doi:10.1038/s42004-024-01242-y.

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https://doi.org/10.1038/s42004-024-01242-y (Publisher version)
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 Creators:
Kim, Youngchang1, Author
Lee, Seung Hwan1, Author
Gade, Priyanka1, Author
Nattermann, Maren2, Author           
Maltseva, Natalia1, Author
Endres, Michael1, Author
Chen, Jing1, Author
Wichmann, Philipp2, Author           
Hu, Yang1, Author
Marchal, Daniel G.2, Author           
Yoshikuni, Yasuo1, Author
Erb, Tobias J.2, Author                 
Gonzalez, Ramon1, Author
Michalska, Karolina1, Author
Joachimiak, Andrzej1, Author
Affiliations:
1external, ou_persistent22              
2Cellular Operating Systems, Department of Biochemistry and Synthetic Metabolism, Max Planck Institute for Terrestrial Microbiology, Max Planck Society, ou_3266303              

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 Abstract: 2-Hydroxyacyl-CoA lyase/synthase (HACL/S) is a thiamine diphosphate (ThDP)-dependent versatile enzyme originally discovered in the mammalian α-oxidation pathway. HACL/S natively cleaves 2-hydroxyacyl-CoAs and, in its reverse direction, condenses formyl-CoA with aldehydes or ketones. The one-carbon elongation biochemistry based on HACL/S has enabled the use of molecules derived from greenhouse gases as biomanufacturing feedstocks. We investigated several HACL/S family members with high activity in the condensation of formyl-CoA and aldehydes, and distinct chain-length specificities and kinetic parameters. Our analysis revealed the structures of enzymes in complex with acyl-CoA substrates and products, several covalent intermediates, bound ThDP and ADP, as well as the C-terminal active site region. One of these observed states corresponds to the intermediary α–carbanion with hydroxymethyl-CoA covalently attached to ThDP. This research distinguishes HACL/S from related sub-families and identifies key residues involved in substrate binding and catalysis. These findings expand our knowledge of acyloin-condensation biochemistry and offer attractive prospects for biocatalysis using carbon elongation.

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Language(s): eng - English
 Dates: 2024-05-212024-07-102024-07-21
 Publication Status: Issued
 Pages: -
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 Table of Contents: -
 Rev. Type: Peer
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Title: Communications Chemistry
  Abbreviation : Commun. Chem.
Source Genre: Journal
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Publ. Info: London : Springer Nature
Pages: 160 Volume / Issue: 7 (1) Sequence Number: - Start / End Page: - Identifier: ISSN: 2399-3669
CoNE: https://pure.mpg.de/cone/journals/resource/2399-3669