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  i-PI 3.0: A flexible and efficient framework for advanced atomistic simulations

Litman, Y., Kapil, V., Feldman, Y. M. Y., Tisi, D., Begušić, T., Fidanyan, K., et al. (2024). i-PI 3.0: A flexible and efficient framework for advanced atomistic simulations. The Journal of Chemical Physics, 161(6): 062504. doi:10.1063/5.0215869.

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https://arxiv.org/abs/2405.15224 (Preprint)
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https://doi.org/10.1063/5.0215869 (Publisher version)
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https://github.com/i-pi/i-pi (Research data)
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i-PI. The tag v3.0.0-beta was used to generate the examples and benchmarks reported in this article. The data required to reproduce the figures and benchmark simulations are available at https://github.com/i-pi/ipiv3_data.
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https://doi.org/10.1063/10.0028270 (Supplementary material)
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Scilight article "Updates to i-PI package improve performance in widely used atomistic simulation software" by A. Liebendorfer
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Creators

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 Creators:
Litman, Y.1, Author
Kapil, V.1, 2, 3, Author
Feldman, Y. M. Y.4, Author
Tisi, D.5, Author
Begušić, T.6, Author
Fidanyan, K.7, 8, Author           
Fraux, G.5, Author
Higer, J.9, Author
Kellner, M.5, Author
Li, T. E.10, Author
Pós, E. S.8, Author
Stocco, E.7, 8, Author           
Trenins, G.8, Author
Hirshberg, B.4, Author
Rossi, M.8, Author
Ceriotti, M.5, Author
Affiliations:
1Y. Hamied Department of Chemistry, University of Cambridge, ou_persistent22              
2Department of Physics and Astronomy, University College London, ou_persistent22              
3Thomas Young Centre and London Centre for Nanotechnology, ou_persistent22              
4School of Chemistry, Tel Aviv University, ou_persistent22              
5Laboratory of Computational Science and Modeling, Institut des Matériaux, École Polytechnique Fédérale de Lausanne, ou_persistent22              
6Div. of Chemistry and Chemical Engineering, California Institute of Technology, ou_persistent22              
7International Max Planck Research School for Ultrafast Imaging & Structural Dynamics (IMPRS-UFAST), Max Planck Institute for the Structure and Dynamics of Matter, Max Planck Society, ou_2266714              
8Simulations from Ab Initio Approaches, Theory Department, Max Planck Institute for the Structure and Dynamics of Matter, Max Planck Society, ou_3185035              
9School of Physics, Tel Aviv University, ou_persistent22              
10Department of Physics and Astronomy, University of Delaware, ou_persistent22              

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 Abstract: Atomic-scale simulations have progressed tremendously over the past decade, largely thanks to the availability of machine-learning interatomic potentials. These potentials combine the accuracy of electronic structure calculations with the ability to reach extensive length and time scales. The i-PI package facilitates integrating the latest developments in this field with advanced modeling techniques thanks to a modular software architecture based on inter-process communication through a socket interface. The choice of Python for implementation facilitates rapid prototyping but can add computational overhead. In this new release, we carefully benchmarked and optimized i-PI for several common simulation scenarios, making such overhead negligible when i-PI is used to model systems up to tens of thousands of atoms using widely adopted machine learning interatomic potentials, such as Behler–Parinello, DeePMD, and MACE neural networks. We also present the implementation of several new features, including an efficient algorithm to model bosonic and fermionic exchange, a framework for uncertainty quantification to be used in conjunction with machine-learning potentials, a communication infrastructure that allows for deeper integration with electronic-driven simulations, and an approach to simulate coupled photon-nuclear dynamics in optical or plasmonic cavities.

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Language(s): eng - English
 Dates: 2024-04-262024-07-112024-08-142024-08-14
 Publication Status: Issued
 Pages: -
 Publishing info: -
 Table of Contents: -
 Rev. Type: Peer
 Identifiers: arXiv: 2405.15224
DOI: 10.1063/5.0215869
 Degree: -

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Project name : -
Grant ID : 101001890
Funding program : Horizon 2020 (H2020)
Funding organization : European Commission (EC)
Project name : Y.L. was funded by the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Project No. 467724959. V.K. acknowledges support from the Ernest Oppenheimer Early Career Fellowship and the Sydney Harvey Junior Research Fellowship, Churchill College, University of Cambridge. V.K. is grateful for computational support from the Swiss National Supercomputing Centre under Project No. s1209, the UK national high-performance computing service, ARCHER2, for which access was obtained via the UKCP consortium and the EPSRC under Grant No. ref EP/P022561/1, and the Cambridge Service for Data-Driven Discovery (CSD3). T.B. acknowledges financial support from the Swiss National Science Foundation through the Early Postdoc Mobility Fellowship (Grant No. P2ELP2-199757). B.H. acknowledges support from the USA–Israel Binational Science Foundation (Grant No. 2020083) and the Israel Science Foundation (Grant Nos. 1037/22 and 1312/22). Y.F. was supported by Schmidt Science Fellows, in partnership with the Rhodes Trust. T.E.L. was supported by start-up funds from the University of Delaware Department of Physics and Astronomy. M.R. and E.S. acknowledge computer time from the Max Planck Computing and Data Facility (MPCDF) and funding from the IMPRS-UFAST program and the Lise–Meitner Excellence program. M.R. thanks Jan Berges for a careful read of Sec. V C. M.C., M.K., and D.T. acknowledge funding from the Swiss National Science Foundation (SNSF) under the projects CRSII5_202296 and 200020_214879. M.C. and D.T. also acknowledge the support from the MARVEL National Centre of Competence in Research (NCCR) M.C. acknowledges funding from the European Research Council (ERC) under the European Union’s Horizon 2020 Research and Innovation Program under Grant No. 101001890-FIAMMA. We thank Eli Fields for helpful comments.
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Source 1

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Title: The Journal of Chemical Physics
  Abbreviation : J. Chem. Phys.
Source Genre: Journal
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Publ. Info: -
Pages: - Volume / Issue: 161 (6) Sequence Number: 062504 Start / End Page: - Identifier: ISSN: 0021-9606
CoNE: https://pure.mpg.de/cone/journals/resource/954922836226