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  EF-P and its paralog EfpL (YeiP) differentially control translation of proline-containing sequences

Sieber, A., Parr, M., Ehr, J. v., Dhamotharan, K., Kielkowski, P., Brewer, T., et al. (2024). EF-P and its paralog EfpL (YeiP) differentially control translation of proline-containing sequences. Nature Communications, 15: 10465. doi:10.1038/s41467-024-54556-9.

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 Urheber:
Sieber, Alina1, Autor
Parr, Marina2, Autor
Ehr, Julian von3, 4, Autor                 
Dhamotharan, Karthikeyan4, Autor
Kielkowski, Pavel5, Autor
Brewer, Tess1, Autor
Schäpers, Anna1, Autor
Krafczyk, Ralph1, Autor
Qi, Fei6, Autor
Schlundt, Andreas4, 7, Autor
Frishman, Dmitrij2, Autor
Lassak, Jürgen1, Autor
Affiliations:
1Faculty of Biology, Microbiology, Ludwig-Maximilians-Universität München, Planegg-Martinsried, Germany, ou_persistent22              
2Department of Bioinformatics, Wissenschaftszentrum Weihenstephan, Technische Universität München, Freising, Germany, ou_persistent22              
3IMPRS-CBP, Max Planck Institute of Biophysics, Max Planck Society, ou_3562496              
4Institute for Molecular Biosciences and Biomolecular Resonance Center (BMRZ), Goethe University Frankfurt, Frankfurt, Germany, ou_persistent22              
5Department of Chemistry, Institut für Chemische Epigenetik (ICEM), Ludwig-Maximilians-Universität München, Munich, Germany, ou_persistent22              
6State Key Laboratory of Cellular Stress Biology, School of Life Sciences, Xiamen University, Xiamen, China, ou_persistent22              
7Institute of Biochemistry, University of Greifswald, Greifswald, Germany, ou_persistent22              

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Schlagwörter: Acylation, Escherichia coli, Escherichia coli Proteins, Lysine, Peptide Elongation Factors, Peptides, Proline, Protein Biosynthesis, Ribosomes
 Zusammenfassung: Polyproline sequences are deleterious to cells because they stall ribosomes. In bacteria, EF-P plays an important role in overcoming such polyproline sequence-induced ribosome stalling. Additionally, numerous bacteria possess an EF-P paralog called EfpL (also known as YeiP) of unknown function. Here, we functionally and structurally characterize EfpL from Escherichia coli and demonstrate its role in the translational stress response. Through ribosome profiling, we analyze the EfpL arrest motif spectrum and find additional sequences beyond the canonical polyproline motifs that both EF-P and EfpL can resolve. Notably, the two factors can also induce pauses. We further report that EfpL can sense the metabolic state of the cell via lysine acylation. Overall, our work characterizes the role of EfpL in ribosome rescue at proline-containing sequences, and provides evidence that co-occurrence of EF-P and EfpL is an evolutionary driver for higher bacterial growth rates.

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Sprache(n): eng - English
 Datum: 2024-04-302024-11-132024-12-02
 Publikationsstatus: Erschienen
 Seiten: 16
 Ort, Verlag, Ausgabe: -
 Inhaltsverzeichnis: -
 Art der Begutachtung: Expertenbegutachtung
 Identifikatoren: DOI: 10.1038/s41467-024-54556-9
BibTex Citekey: sieber_ef-p_2024
 Art des Abschluß: -

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Titel: Nature Communications
  Kurztitel : Nat. Commun.
Genre der Quelle: Zeitschrift
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Ort, Verlag, Ausgabe: London : Nature Publishing Group
Seiten: - Band / Heft: 15 Artikelnummer: 10465 Start- / Endseite: - Identifikator: ISSN: 2041-1723
CoNE: https://pure.mpg.de/cone/journals/resource/2041-1723