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Journal Article

PSIbase: a database of Protein Structural Interactome map (PSIMAP)


Lappe,  Michael
Independent Junior Research Groups (OWL), Max Planck Institute for Molecular Genetics, Max Planck Society;

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Gong, S., Yoon, G., Jang, I., Bolser, D., Panos, D., Schroeder, M., et al. (2005). PSIbase: a database of Protein Structural Interactome map (PSIMAP). Bioinformatics, 21(10), 2541-2543. doi:10.1093/bioinformatics/bti366.

Cite as: http://hdl.handle.net/11858/00-001M-0000-0010-86BB-E
Summary: Protein Structural Interactome map (PSIMAP) is a global interaction map that describes domain–domain and protein–protein interaction information for known Protein Data Bank structures. It calculates the Euclidean distance to determine interactions between possible pairs of structural domains in proteins. PSIbase is a database and file server for protein structural interaction information calculated by the PSIMAP algorithm. PSIbase also provides an easy-to-use protein domain assignment module, interaction navigation and visual tools. Users can retrieve possible interaction partners of their proteins of interests if a significant homology assignment is made with their query sequences.