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Maximum-likelihood analysis using TREE-PUZZLE

MPS-Authors

Schmidt,  Heiko A.
Max Planck Society;

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Schmidt.pdf
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Citation

Schmidt, H. A., & von Haeseler, A. (2003). Maximum-likelihood analysis using TREE-PUZZLE (1st edition). New York [et al]: John Wiley & Sons, Inc.


Cite as: https://hdl.handle.net/11858/00-001M-0000-0010-8B3A-6
Abstract
TREE-PUZZLE provides means to analyze and reconstruct evolutionary relationships and trees based on quartets, i.e. groups of 4 sequences. Basic Protocol 1 explains how to reconstruct trees based on the maximum-likelihood principle and quartet puzzling. Basic Protocol 2 discusses likelihood mapping, a method to visualize phylogenetic content in a multiple sequence alignment. Basic Protocol 3 explains how to compare tree topologies using different tests.