English
 
User Manual Privacy Policy Disclaimer Contact us
  Advanced SearchBrowse

Item

ITEM ACTIONSEXPORT

Released

Journal Article

Peakr: Simulating solid-state NMR spectra of proteins.

MPS-Authors
/persons/resource/persons15783

Schneider,  R.
Department of NMR Based Structural Biology, MPI for biophysical chemistry, Max Planck Society;

/persons/resource/persons15596

Odronitz,  F.
Research Group of Systems Biology of Motor Proteins, MPI for biophysical chemistry, Max Planck Society;

/persons/resource/persons37781

Hammesfahr,  B.
Research Group of Systems Biology of Motor Proteins, MPI for biophysical chemistry, Max Planck Society;

/persons/resource/persons39423

Hellkamp,  M.
Research Group of Systems Biology of Motor Proteins, MPI for biophysical chemistry, Max Planck Society;

/persons/resource/persons15357

Kollmar,  M.
Research Group of Systems Biology of Motor Proteins, MPI for biophysical chemistry, Max Planck Society;

Fulltext (public)

1740144.pdf
(Publisher version), 560KB

Supplementary Material (public)

1740144_Supplement_1.pdf
(Supplementary material), 40KB

1740144_Supplement_2.pdf
(Supplementary material), 541KB

Citation

Schneider, R., Odronitz, F., Hammesfahr, B., Hellkamp, M., & Kollmar, M. (2013). Peakr: Simulating solid-state NMR spectra of proteins. Bioinformatics, 29(9), 1134-1140. doi:10.1093/bioinformatics/btt125.


Cite as: http://hdl.handle.net/11858/00-001M-0000-000E-FBE9-D
Abstract
Motivation: When analyzing solid-state nuclear magnetic resonance (NMR) spectra of proteins, assignment of resonances to nuclei and derivation of restraints for 3D structure calculations are challenging and time-consuming processes. Simulated spectra that have been calculated based on, for example, chemical shift predictions and structural models can be of considerable help. Existing solutions are typically limited in the type of experiment they can consider and difficult to adapt to different settings. Results: Here, we present Peakr, a software to simulate solid-state NMR spectra of proteins. It can generate simulated spectra based on numerous common types of internuclear correlations relevant for assignment and structure elucidation, can compare simulated and experimental spectra and produces lists and visualizations useful for analyzing measured spectra. Compared with other solutions, it is fast, versatile and user friendly. Availability and implementation: Peakr is maintained under the GPL license and can be accessed at http://www.peakr.org. The source code can be obtained on request from the authors.