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At-TAX: A Whole Genome Tiling Array Resource for Developmental Expression Analysis and Transcript Identification in Arabidopsis thaliana

MPS-Authors

Laubinger,  S
Max Planck Institute for Developmental Biology, Max Planck Society;

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Zeller,  G
Friedrich Miescher Laboratory, Max Planck Society;
Max Planck Institute for Developmental Biology, Max Planck Society;

Sachsenberg,  T
Max Planck Institute for Developmental Biology, Max Planck Society;

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Widmer,  C
Friedrich Miescher Laboratory, Max Planck Society;

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Schölkopf,  B
Department Empirical Inference, Max Planck Institute for Biological Cybernetics, Max Planck Society;
Max Planck Institute for Biological Cybernetics, Max Planck Society;

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Rätsch,  G
Friedrich Miescher Laboratory, Max Planck Society;

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Weigel,  D
Max Planck Institute for Developmental Biology, Max Planck Society;

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Citation

Laubinger, S., Zeller, G., Henz, S., Sachsenberg, T., Widmer, C., Naouar, N., et al. (2008). At-TAX: A Whole Genome Tiling Array Resource for Developmental Expression Analysis and Transcript Identification in Arabidopsis thaliana. Genome Biology, 9(7): R112, pp. 1-16. doi:10.1186/gb-2008-9-7-r112.


Cite as: http://hdl.handle.net/11858/00-001M-0000-0013-C81D-3
Abstract
Gene expression maps for model organisms, including Arabidopsis thaliana, have typically been created using gene-centric expression arrays. Here, we describe a comprehensive expression atlas, Arabidopsis thaliana Tiling Array Express (At-TAX), which is based on whole-genome tiling arrays. We demonstrate that tiling arrays are accurate tools for gene expression analysis and identified more than 1,000 unannotated transcribed regions. Visualizations of gene expression estimates, transcribed regions, and tiling probe measurements are accessible online at the At-TAX homepage.