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Visualization of ATP Synthase Dimers in Mitochondria by Electron Cryo-tomography

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Davies,  Karen M.
Department of Structural Biology, Max Planck Institute of Biophysics, Max Planck Society;

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Daum,  Bertram
Department of Structural Biology, Max Planck Institute of Biophysics, Max Planck Society;

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Gold,  Vicky A. M.
Department of Structural Biology, Max Planck Institute of Biophysics, Max Planck Society;

Mühleip,  Alexander W.
Max Planck Society;

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Brandt,  Tobias
Department of Structural Biology, Max Planck Institute of Biophysics, Max Planck Society;

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Blum,  Thorsten
Department of Structural Biology, Max Planck Institute of Biophysics, Max Planck Society;

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Mills,  Deryck J.
Department of Structural Biology, Max Planck Institute of Biophysics, Max Planck Society;

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Kühlbrandt,  Werner
Department of Structural Biology, Max Planck Institute of Biophysics, Max Planck Society;

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Citation

Davies, K. M., Daum, B., Gold, V. A. M., Mühleip, A. W., Brandt, T., Blum, T., et al. (2014). Visualization of ATP Synthase Dimers in Mitochondria by Electron Cryo-tomography. Journal of Visualized Experiments, (91 doi: 10.3791/51228): e51228. doi:10.3791/51228.


Cite as: https://hdl.handle.net/11858/00-001M-0000-0024-D482-C
Abstract
Electron cryo-tomography is a powerful tool in structural biology, capable of visualizing the three-dimensional structure of biological samples, such as cells, organelles, membrane vesicles, or viruses at molecular detail. To achieve this, the aqueous sample is rapidly vitrified in liquid ethane, which preserves it in a close-to-native, frozen-hydrated state. In the electron microscope, tilt series are recorded at liquid nitrogen temperature, from which 3D tomograms are reconstructed. The signal-to-noise ratio of the tomographic volume is inherently low. Recognizable, recurring features are enhanced by subtomogram averaging, by which individual subvolumes are cut out, aligned and averaged to reduce noise. In this way, 3D maps with a resolution of 2 nm or better can be obtained. A fit of available high-resolution structures to the 3D volume then produces atomic models of protein complexes in their native environment. Here we show how we use electron cryo-tomography to study the in situ organization of large membrane protein complexes in mitochondria. We find that ATP synthases are organized in rows of dimers along highly curved apices of the inner membrane cristae, whereas complex I is randomly distributed in the membrane regions on either side of the rows. By subtomogram averaging we obtained a structure of the mitochondrial ATP synthase dimer within the cristae membrane.