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Thesis

Computational analysis framework for vascular network images

MPS-Authors
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Lasser,  Jana
Max Planck Research Group Physics of Biological Organization, Max Planck Institute for Dynamics and Self-Organization, Max Planck Society;

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2013_bachelor_thesis_jana_lasser.pdf
(Publisher version), 38MB

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Citation

Lasser, J. (2013). Computational analysis framework for vascular network images. Bachelor Thesis, Georg-August-Universität, Göttingen.


Cite as: http://hdl.handle.net/11858/00-001M-0000-002B-2D8A-3
Abstract
In this thesis, we develop a framework for the processing of high resolution images of vascular networks. The framework processes high resolution scans of plant leaves and extracts the topological and geometric information of the vein networks present on the leaves. This framework consists of modular Python scripts, modules and classes. The main goal of the work is to provide as fast and highly automated processing of the data as possible while preserving the properties of the networks. The resulting framework can be used cross-platform and on PCs as well as on clusters. With a few adaptations it can be a good basis for the processing of images from many networks in different biological systems.