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In situ distribution and activity of nitrifying bacteria in freshwater sediment

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Altmann,  D.
Department of Biogeochemistry, Max Planck Institute for Marine Microbiology, Max Planck Society;

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Stief,  P.
Permanent Research Group Microsensor, Max Planck Institute for Marine Microbiology, Max Planck Society;

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Amann,  R.
Department of Molecular Ecology, Max Planck Institute for Marine Microbiology, Max Planck Society;

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de Beer,  D.
Permanent Research Group Microsensor, Max Planck Institute for Marine Microbiology, Max Planck Society;

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Schramm,  A.
Permanent Research Group Microsensor, Max Planck Institute for Marine Microbiology, Max Planck Society;

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Citation

Altmann, D., Stief, P., Amann, R., de Beer, D., & Schramm, A. (2003). In situ distribution and activity of nitrifying bacteria in freshwater sediment. Environmental Microbiology, 5(9), 798-803.


Cite as: https://hdl.handle.net/21.11116/0000-0001-D1F7-C
Abstract
Nitrification was investigated in a model freshwater sediment by the combined use of microsensors and fluorescence in situ hybridization with rRNA-targeted oligonucleotide probes. In situ nitrification activity was restricted mainly to the upper 2 mm of the sediment and coincided with the maximum abundance of nitrifying bacteria, i.e. 1.5 x 107 cells cm-3 for ammonia-oxidizing Beta-proteobacteria (AOB) and 8.6 x 107 cells cm-3 for Nitrospira-like nitrite-oxidizing bacteria (NOB). Cell numbers of AOB decreased more rapidly with depth than numbers of NOB. For the first time, Nitrospira-like bacteria could be quantified and correlated with in situ nitrite oxidation rates in a sediment. Estimated cell-specific nitrite oxidation rates were 1.2-2.7 fmol NO2- cell-1 h-1.