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Journal Article

Cell-type-specific metabolic labeling of nascent proteomes in vivo

MPS-Authors

Alvarez-Castelao,  Beatriz
Synaptic Plasticity Department, Max Planck Institute for Brain Research, Max Planck Society;

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Schanzenbächer,  Christoph T.
Synaptic Plasticity Department, Max Planck Institute for Brain Research, Max Planck Society;
Department of Molecular Membrane Biology, Max Planck Institute of Biophysics, Max Planck Society;

Hanus,  Cyril
Synaptic Plasticity Department, Max Planck Institute for Brain Research, Max Planck Society;

Glock,  Caspar
Synaptic Plasticity Department, Max Planck Institute for Brain Research, Max Planck Society;

tom Dieck,  Susanne
Synaptic Plasticity Department, Max Planck Institute for Brain Research, Max Planck Society;

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Dörrbaum,  Aline Ricarda
Synaptic Plasticity Department, Max Planck Institute for Brain Research, Max Planck Society;
Department of Molecular Membrane Biology, Max Planck Institute of Biophysics, Max Planck Society;

Bartnik,  Ina
Synaptic Plasticity Department, Max Planck Institute for Brain Research, Max Planck Society;

Nassim-Assir,  Belquis
Synaptic Plasticity Department, Max Planck Institute for Brain Research, Max Planck Society;

Ciirdaeva,  Elena
Synaptic Plasticity Department, Max Planck Institute for Brain Research, Max Planck Society;

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Langer,  Julian David       
Department of Molecular Membrane Biology, Max Planck Institute of Biophysics, Max Planck Society;
Synaptic Plasticity Department, Max Planck Institute for Brain Research, Max Planck Society;

Schuman,  Erin Margaret
Synaptic Plasticity Department, Max Planck Institute for Brain Research, Max Planck Society;

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Citation

Alvarez-Castelao, B., Schanzenbächer, C. T., Hanus, C., Glock, C., tom Dieck, S., Dörrbaum, A. R., et al. (2017). Cell-type-specific metabolic labeling of nascent proteomes in vivo. Nature Biotechnology, 35(12), 1196-1201. doi:doi:10.1038/nbt.4016.


Cite as: https://hdl.handle.net/21.11116/0000-0001-27D7-1
Abstract
Although advances in protein labeling methods have made it possible to measure the proteome of mixed cell populations, it has not been possible to isolate cell-type-specific proteomes in vivo. This is because the existing methods for metabolic protein labeling in vivo access all cell types. We report the development of a transgenic mouse line where Cre-recombinase-induced expression of a mutant methionyl-tRNA synthetase (L274G) enables the cell-type-specific labeling of nascent proteins with a non-canonical amino-acid and click chemistry. Using immunoblotting, imaging and mass spectrometry, we use our transgenic mouse to label and analyze proteins in excitatory principal neurons and Purkinje neurons in vitro (brain slices) and in vivo. We discover more than 200 proteins that are differentially regulated in hippocampal excitatory neurons by exposing mice to an environment with enriched sensory cues. Our approach can be used to isolate, analyze and quantitate cell-type-specific proteomes and their dynamics in healthy and diseased tissues.