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LipidXplorer: Software for Quantitative Shotgun Lipidomics Compatible with Multiple Mass Spectrometry Platforms

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Herzog,  Ronny
Max Planck Institute of Molecular Cell Biology and Genetics, Max Planck Society;

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Schwudke,  Dominik
Max Planck Institute of Molecular Cell Biology and Genetics, Max Planck Society;

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Shevchenko,  Andrej
Max Planck Institute of Molecular Cell Biology and Genetics, Max Planck Society;

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Citation

Herzog, R., Schwudke, D., & Shevchenko, A. (2013). LipidXplorer: Software for Quantitative Shotgun Lipidomics Compatible with Multiple Mass Spectrometry Platforms. In A. D. Baxevanis (Ed.), Current Protocols in Bioinformatics; 43 (pp. 141201-141230). Hoboken, USA: Wiley.


Cite as: https://hdl.handle.net/21.11116/0000-0001-06F4-5
Abstract
LipidXplorer is an open‐source software kit that supports the identification and quantification of molecular species of any lipid class detected by shotgun experiments performed on any mass spectrometry platform. LipidXplorer does not rely on a database of reference spectra: instead, lipid identification routines are user defined in the declarative molecular fragmentation query language (MFQL). The software supports batch processing of multiple shotgun acquisitions by high‐resolution mass mapping, precursor and neutral‐loss scanning, and data‐dependent MS/MS lending itself to a variety of lipidomics applications in cell biology and molecular medicine.