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Protein identification pipeline for the homology-driven proteomics

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Junqueira,  Magno
Max Planck Institute of Molecular Cell Biology and Genetics, Max Planck Society;

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Thomas,  Henrik
Max Planck Institute of Molecular Cell Biology and Genetics, Max Planck Society;

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Shevchenko,  Andrej
Max Planck Institute of Molecular Cell Biology and Genetics, Max Planck Society;

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Citation

Junqueira, M., Spirin, V., Balbuena, T. S., Thomas, H., Adzhubei, I., Sunyaev, S., et al. (2008). Protein identification pipeline for the homology-driven proteomics. Journal of Proteomics, 71(3), 346-356.


Cite as: https://hdl.handle.net/21.11116/0000-0001-0E6C-8
Abstract
Homology-driven proteomics is a major tool to characterize proteomes of organisms with unsequenced genomes. This paper addresses practical aspects of automated homology-driven protein identifications by LC-MS/MS on a hybrid LTQ Orbitrap mass spectrometer. All essential software elements supporting the presented pipeline are either hosted at the publicly accessible web server, or are available for free download.