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Journal Article

MMseqs2 desktop and local web server app for fast, interactive sequence searches.

MPS-Authors
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Mirdita,  M.
Research Group of Computational Biology, MPI for Biophysical Chemistry, Max Planck Society;

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Steinegger,  M.
Research Group of Computational Biology, MPI for Biophysical Chemistry, Max Planck Society;

/persons/resource/persons128572

Söding,  J.
Research Group of Computational Biology, MPI for Biophysical Chemistry, Max Planck Society;

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Fulltext (public)

3017752.pdf
(Publisher version), 199KB

Supplementary Material (public)

3017752_Suppl.pdf
(Supplementary material), 137KB

Citation

Mirdita, M., Steinegger, M., & Söding, J. (2019). MMseqs2 desktop and local web server app for fast, interactive sequence searches. Bioinformatics, 35(16), 2856-2858. doi:10.1093/bioinformatics/bty1057.


Cite as: http://hdl.handle.net/21.11116/0000-0002-BDBA-8
Abstract
Summary: The MMseqs2 desktop and web server app facilitates interactive sequence searches through custom protein sequence and profile databases on personal workstations. By eliminating MMseqs2's runtime overhead, we reduced response times to a few seconds at sensitivities close to BLAST. Availability and implementation: The app is easy to install for non-experts. GPLv3-licensed code, prebuilt desktop app packages for Windows, macOS and Linux, Docker images for the web server application, and a demo web server are available at https://search.mmseqs.com.