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Structural and functional dynamics of sulfate-reducing populations in bacterial biofilms

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Santegoeds,  Cecilia M.
Permanent Research Group Microsensor, Max Planck Institute for Marine Microbiology, Max Planck Society;

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Ferdelman,  Timothy G.
Department of Biogeochemistry, Max Planck Institute for Marine Microbiology, Max Planck Society;

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Muyzer,  Gerad
Department of Molecular Ecology, Max Planck Institute for Marine Microbiology, Max Planck Society;

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de Beer,  Dirk
Permanent Research Group Microsensor, Max Planck Institute for Marine Microbiology, Max Planck Society;

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Citation

Santegoeds, C. M., Ferdelman, T. G., Muyzer, G., & de Beer, D. (1998). Structural and functional dynamics of sulfate-reducing populations in bacterial biofilms. Applied and Environmental Microbiology, 64(10), 3731-3739.


Cite as: https://hdl.handle.net/21.11116/0000-0005-42B5-4
Abstract
We describe the combined application of microsensors and molecular techniques to investigate the development of sulfate reduction and of sulfate-reducing bacterial populations in an aerobic bacterial biofilm. Microsensor measurements for oxygen showed that anaerobic zones developed in the biofilm within 1 week and that oxygen was depleted in the top 200 to 400 mu m during all stages of biofilm development. Sulfate reduction was first detected after 6 weeks of growth, although :favorable conditions for growth of sulfate-reducing bacteria (SRB) were present from the first week. In situ hybridization with a 16S rRNA probe for SRB revealed that sulfate reducers were present id high numbers (approximately 10(8) SRB/ml) in all stages of development, both in the oxic and anoxic zones of the biofilm. Denaturing gradient gel electrophoresis (DGGE) showed that the genetic diversity of the microbial community increased during the development of the biofilm. Hybridization analysis of the DGGE profiles with taxon-specific oligonucleotide probes showed that Desulfobulbus and Desulfovibrio were the main sulfate-reducing bacteria in all biofilm samples as well as in the bulk activated sludge. However, different Desulfobulbus and Desulfovibrio species were found in the 6th and 8th weeks of incubation, respectively, coinciding with the development of sulfate reduction. Our data indicate that not all SRB detected by molecular analysis were sulfidogenically active in the biofilm.