SNT: a unifying toolbox for quantification of neuronal anatomy.

Arshadi, Cameron; Günther, Ulrik; Eddison, Mark; Harrington, Kyle; Ferreira, Tiago A

doi:10.1038/s41592-021-01105-7

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SNT: a unifying toolbox for quantification of neuronal anatomy.

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Günther, Ulrik
Max Planck Institute for Molecular Cell Biology and Genetics, Max Planck Society;

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Citation

Arshadi, C., Günther, U., Eddison, M., Harrington, K., & Ferreira, T. A. (2021). SNT: a unifying toolbox for quantification of neuronal anatomy. Nature methods, 18(4), 374-377. doi:10.1038/s41592-021-01105-7.

Cite as: https://hdl.handle.net/21.11116/0000-0008-DB0F-2

Abstract

SNT is an end-to-end framework for neuronal morphometry and whole-brain connectomics that supports tracing, proof-editing, visualization, quantification and modeling of neuroanatomy. With an open architecture, a large user base, community-based documentation, support for complex imagery and several model organisms, SNT is a flexible resource for the broad neuroscience community. SNT is both a desktop application and multi-language scripting library, and it is available through the Fiji distribution of ImageJ.