rQuant.web: a tool for RNA-Seq-based transcript quantitation

Bohnert, R; Rätsch, G

doi:10.1093/nar/gkq448

アイテム詳細

登録内容を編集ファイル形式で保存

一時保存へ追加

タグ情報を表示リリース履歴を表示詳細要約

公開

学術論文

rQuant.web: a tool for RNA-Seq-based transcript quantitation

MPS-Authors

/persons/resource/persons85601

Bohnert, R
Rätsch Group, Friedrich Miescher Laboratory, Max Planck Society;

/persons/resource/persons84153

Rätsch, G
Rätsch Group, Friedrich Miescher Laboratory, Max Planck Society;

External Resource

There are no locators available

Fulltext (restricted access)

There are currently no full texts shared for your IP range.

フルテキスト (公開)

公開されているフルテキストはありません

付随資料 (公開)

There is no public supplementary material available

引用

Bohnert, R., & Rätsch, G. (2010). rQuant.web: a tool for RNA-Seq-based transcript quantitation. Nucleic Acids Research (London), 38, W348-W351. doi:10.1093/nar/gkq448.

引用: https://hdl.handle.net/21.11116/0000-000A-58FA-A

要旨

We provide a novel web service, called rQuant.web, allowing convenient access to tools for quantitative analysis of RNA sequencing data. The underlying quantitation technique rQuant is based on quadratic programming and estimates different biases induced by library preparation, sequencing and read mapping. It can tackle multiple transcripts per gene locus and is therefore particularly well suited to quantify alternative transcripts. rQuant.web is available as a tool in a Galaxy installation at http://galaxy.fml.mpg.de. Using rQuant.web is free of charge, it is open to all users, and there is no login requirement.