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Exploring the catalytic cascade of cembranoid biosynthesis by combination of genetic engineering and molecular simulations

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Loll,  Bernhard
Baumeister, Wolfgang / Molecular Structural Biology, Max Planck Institute of Biochemistry, Max Planck Society;

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Schrepfer, P., Ugur, I., Klumpe, S., Loll, B., Kaila, V. R. I., & Bruck, T. (2020). Exploring the catalytic cascade of cembranoid biosynthesis by combination of genetic engineering and molecular simulations. Computational and Structural Biotechnology Journal, 18, 1819-1829. doi:10.1016/j.csbj.2020.06.030.


Cite as: https://hdl.handle.net/21.11116/0000-000A-AAD8-3
Abstract
While chemical steps involved in bioactive cembranoid biosynthesis have been examined, the corresponding enzymatic mechanisms leading to their formation remain elusive. In the tobacco plant, Nicotiana tabacum, a putative cembratriene-ol synthase (CBTS) initiates the catalytic cascade that lead to the biosynthesis of cembratriene-4,6-diols, which displays antibacterial- and anti-proliferative activities. We report here on structural homology models, functional studies, and mechanistic explorations of this enzyme using a combination of biosynthetic and computational methods. This approach guided us to develop an efficient de novo production of five bioactive non- and monohydroxylated cembranoids. Our homology models in combination with quantum and classical simulations suggested putative principles of the CBTS catalytic cycle, and provided a possible rationale for the formation of premature olefinic side products. Moreover, the functional reconstruction of a N. tabacum-derived class II P450 with a cognate CPR, obtained by transcriptome mining provided for production of bioactive cembratriene-4,6-diols. Our combined findings provide mechanistic insights into cembranoid biosynthesis, and a basis for the sustainable industrial production of highly valuable bioactive cembranoids. (C) 2020 The Author(s). Published by Elsevier B.V. on behalf of Research Network of Computational and Structural Biotechnology.