Genomewide SNP variation reveals relationships among landraces and modern 
varieties of rice

McNally, KL; Childs, KL; Bohnert, R; Davidson, RM; Zhao, K; Ulat, VJ; Zeller, G; Clark, RM; Hoen, TR; Bureau, DE; Stokowski, R; Ballinger, DG; Frazer, KA; Cox, DR; Padhukasahasram, B; Bustamante, CD; Weigel, D; Mackill, DJ; Bruskiewich, RM; Rätsch, G; Buell, CR; Leung, H; Leach, JE

doi:10.1073/pnas.0900992106

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Genomewide SNP variation reveals relationships among landraces and modern varieties of rice

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Zeller, G
Department Molecular Biology, Max Planck Institute for Developmental Biology, Max Planck Society;

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Weigel, D
Department Molecular Biology, Max Planck Institute for Developmental Biology, Max Planck Society;

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引用

McNally, K., Childs, K., Bohnert, R., Davidson, R., Zhao, K., Ulat, V., Zeller, G., Clark, R., Hoen, T., Bureau, D., Stokowski, R., Ballinger, D., Frazer, K., Cox, D., Padhukasahasram, B., Bustamante, C., Weigel, D., Mackill, D., Bruskiewich, R., Rätsch, G., Buell, C., Leung, H., & Leach, J. (2009). Genomewide SNP variation reveals relationships among landraces and modern varieties of rice. Proceedings of the National Academy of Sciences of the United States of America, 106(30), 12273-12278. doi:10.1073/pnas.0900992106.

引用: https://hdl.handle.net/21.11116/0000-000A-DDF8-6

要旨

Rice, the primary source of dietary calories for half of humanity, is the first crop plant for which a high-quality reference genome sequence from a single variety was produced. We used resequencing microarrays to interrogate 100 Mb of the unique fraction of the reference genome for 20 diverse varieties and landraces that capture the impressive genotypic and phenotypic diversity of domesticated rice. Here, we report the distribution of 160,000 nonredundant SNPs. Introgression patterns of shared SNPs revealed the breeding history and relationships among the 20 varieties; some introgressed regions are associated with agronomic traits that mark major milestones in rice improvement. These comprehensive SNP data provide a foundation for deep exploration of rice diversity and gene-trait relationships and their use for future rice improvement.