TREES toolbox - code for neuronal branching

Cuntz, Hermann

doi:10.1007/978-1-4614-7320-6_793-2

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TREES toolbox - code for neuronal branching

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Cuntz, Hermann
Ernst Strüngmann Institute (ESI) for Neuroscience in Cooperation with Max Planck Society, Max Planck Society;
Cuntz Lab, Ernst Strüngmann Institute (ESI) for Neuroscience in Cooperation with Max Planck Society, Max Planck Society;

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https://link.springer.com/referenceworkentry/10.1007/978-1-4614-7320-6_793-2
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Citation

Cuntz, H. (2014). TREES toolbox - code for neuronal branching. In D. Jaeger, & R. Jung (Eds.), Encyclopedia of computational neuroscience (pp. 1-5). New York: Springer. doi:10.1007/978-1-4614-7320-6_793-2.

Cite as: https://hdl.handle.net/21.11116/0000-000C-9F5D-A

Abstract

Definition

The TREES toolbox is a software package in MATLAB (MathWorks) that provides tools for reconstructing neuronal branching structures from microscopy image stacks and for generating synthetic axonal and dendritic trees. Furthermore, it enables the analysis, visualization, and editing of these trees for which it provides a large set of dedicated MATLAB functions. The TREES toolbox is freely available as open source at www.treestoolbox.org.