Spike sorting pipeline for the International Brain Laboratory

International Brain Laboratory,; Banga, K; Boussard, J; Chapuis, GA; Faulkner, M; Harris, KD; Huntenburg, JM; Hurwitz, C; Lee, HD; Paninski, L; Rossant, C; Roth, N; Steinmetz, NA; Windolf, C; Winter, O

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Spike sorting pipeline for the International Brain Laboratory

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Huntenburg, JM
Department of Computational Neuroscience, Max Planck Institute for Biological Cybernetics, Max Planck Society;

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https://figshare.com/articles/online_resource/Spike_sorting_pipeline_for_the_International_Brain_Laboratory/19705522
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引用

International Brain Laboratory, Banga, K., Boussard, J., Chapuis, G., Faulkner, M., Harris, K., Huntenburg, J., Hurwitz, C., Lee, H., Paninski, L., Rossant, C., Roth, N., Steinmetz, N., Windolf, C., & Winter, O. (2022). Spike sorting pipeline for the International Brain Laboratory.

引用: https://hdl.handle.net/21.11116/0000-000E-16BA-8

要旨

In this article, we document our current spike sorting processing pipeline, including several modifications that enable more scalable and robust processing. We also document our newly developed tools for visualizing and quality-scoring the output of each stage of the processing pipeline. We close by discussing known issues in our pipeline that present opportunities for further improvements.