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Ancient Plasmodium genomes shed light on the history of human malaria

MPS-Authors
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Michel,  Megan       
Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society;

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Skourtanioti,  Eirini       
Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society;

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Pierini,  Federica       
Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society;

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Guevara,  Evelyn K.       
Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society;

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Mötsch,  Angela
Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society;

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Kocher,  Arthur       
Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society;

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Barquera,  Rodrigo       
Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society;

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Bianco,  Raffaela A.       
Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society;

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Carlhoff,  Selina       
Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society;

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Coppola Bove,  Lorenza       
Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society;

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Freilich,  Suzanne       
Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society;

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Giffin,  Karen       
Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society;

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Hermes,  Taylor       
Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society;

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Hiß,  Alina Naomi
Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society;

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Neumann,  Gunnar       
Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society;

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Papac,  Luka
Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society;

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Penske,  Sandra       
Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society;

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Rohrlach,  Adam B.       
Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society;

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Salem,  Nada       
Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society;

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Semerau,  Lena       
Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society;

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Villalba-Mouco,  Vanessa       
Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society;

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Peltola,  Sanni
Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society;

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Lamnidis,  Thiseas C.       
Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society;

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Prüfer,  Kay       
Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society;

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Nägele,  Kathrin       
Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society;

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Spyrou,  Maria       
Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society;

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Schiffels,  Stephan       
Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society;

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Stockhammer,  Philipp W.       
Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society;

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Haak,  Wolfgang       
Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society;

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Posth,  Cosimo       
Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society;

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Warinner,  Christina       
Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society;

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Bos,  Kirsten I.       
Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society;

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Herbig,  Alexander       
Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society;

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Krause,  Johannes       
Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society;

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Michel_Ancient_Nature_2024.pdf
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Citation

Michel, M., Skourtanioti, E., Pierini, F., Guevara, E. K., Mötsch, A., Kocher, A., et al. (2024). Ancient Plasmodium genomes shed light on the history of human malaria. Nature, 631(8019), 125-133. doi:10.1038/s41586-024-07546-2.


Cite as: https://hdl.handle.net/21.11116/0000-000F-6E53-9
Abstract
Malaria-causing protozoa of the genus Plasmodium have exerted one of the strongest selective pressures on the human genome, and resistance alleles provide biomolecular footprints that outline the historical reach of these species1. Nevertheless, debate persists over when and how malaria parasites emerged as human pathogens and spread around the globe1,2. To address these questions, we generated high-coverage ancient mitochondrial and nuclear genome-wide data from P. falciparum, P. vivax and P. malariae from 16 countries spanning around 5,500 years of human history. We identified P. vivax and P. falciparum across geographically disparate regions of Eurasia from as early as the fourth and first millennia BCE, respectively; for P. vivax, this evidence pre-dates textual references by several millennia3. Genomic analysis supports distinct disease histories for P. falciparum and P. vivax in the Americas: similarities between now-eliminated European and peri-contact South American strains indicate that European colonizers were the source of American P. vivax, whereas the trans-Atlantic slave trade probably introduced P. falciparum into the Americas. Our data underscore the role of cross-cultural contacts in the dissemination of malaria, laying the biomolecular foundation for future palaeo-epidemiological research into the impact of Plasmodium parasites on human history. Finally, our unexpected discovery of P. falciparum in the high-altitude Himalayas provides a rare case study in which individual mobility can be inferred from infection status, adding to our knowledge of cross-cultural connectivity in the region nearly three millennia ago.