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Homology-based structure prediction by HMM-HMM comparison and multiple template selection

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Söding,  J       
Department Protein Evolution, Max Planck Institute for Developmental Biology, Max Planck Society;

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Citation

Söding, J. (2006). Homology-based structure prediction by HMM-HMM comparison and multiple template selection. In Critical Assessment of Techniques for Protein Structure Prediction: Seventh Meeting: CASP7 (pp. 53-54).


Cite as: https://hdl.handle.net/21.11116/0000-0010-4250-9
Abstract
HHpred2 is an automatic version of our structure and function prediction server HHpred (http://hhpred.tuebingen.mpg.de/) and is one of four related servers participating in CASP7 (HHpred1 to 3, BayesHH). It uses HMM-HMM comparison with integrated secondary structure comparison, correlation scoring, a novel local HMM-HMM maximum a-posteriori probability (MAP) alignment scheme, and multiple template selection. It typically returns a 3D model within ~15 minutes.