PALMapper: Fast and Accurate Spliced Alignments of Sequence Reads

Rätsch, G; Jean, G; Kahles, A; Sonnenburg, S; De Bona, F; Schneeberger, K; Hagmann, J; Weigel, D

Item

ITEM ACTIONSEXPORT

Add to Basket

Local TagsRelease HistoryDetailsSummary

Released

Poster

PALMapper: Fast and Accurate Spliced Alignments of Sequence Reads

MPS-Authors

/persons/resource/persons49245

Schneeberger, K
Department Molecular Biology, Max Planck Institute for Developmental Biology, Max Planck Society;

/persons/resource/persons85263

Hagmann, J
Department Molecular Biology, Max Planck Institute for Developmental Biology, Max Planck Society;

/persons/resource/persons85266

Weigel, D
Department Molecular Biology, Max Planck Institute for Developmental Biology, Max Planck Society;

External Resource

https://www.iscb.org/uploaded/css/58/17453.pdf
(Abstract)

Fulltext (restricted access)

There are currently no full texts shared for your IP range.

Fulltext (public)

There are no public fulltexts stored in PuRe

Supplementary Material (public)

There is no public supplementary material available

Citation

Rätsch, G., Jean, G., Kahles, A., Sonnenburg, S., De Bona, F., Schneeberger, K., et al. (2010). PALMapper: Fast and Accurate Spliced Alignments of Sequence Reads. Poster presented at 18th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB 2010), Boston, MA, USA.

Cite as: https://hdl.handle.net/21.11116/0000-0010-53CF-8

Abstract

RNA-seq produces huge amounts of sequence reads that are short, error prone and that can be spliced. We have developed PALMapper that is the RNA-seq read mapper combining GenomeMapper and a faster version of QPALMA to accurately and efficiently align reads, while taking advantage of each read's quality information and computational splice site predictions.