MMseqs2 desktop and local web server app for fast, interactive sequence 
searches.

Mirdita, M.; Steinegger, M.; Söding, J.

doi:10.1093/bioinformatics/bty1057

Item

ITEM ACTIONSEXPORT

Add to Basket

Local TagsRelease HistoryDetailsSummary

Released

Journal Article

MMseqs2 desktop and local web server app for fast, interactive sequence searches.

MPS-Authors

/persons/resource/persons202536

Mirdita, M.
Research Group of Computational Biology, MPI for Biophysical Chemistry, Max Planck Society;

/persons/resource/persons200525

Steinegger, M.
Research Group of Computational Biology, MPI for Biophysical Chemistry, Max Planck Society;

/persons/resource/persons128572

Söding, J.
Research Group of Computational Biology, MPI for Biophysical Chemistry, Max Planck Society;

External Resource

No external resources are shared

Fulltext (restricted access)

There are currently no full texts shared for your IP range.

Fulltext (public)

3017752.pdf
(Publisher version), 199KB

Supplementary Material (public)

3017752_Suppl.pdf
(Supplementary material), 137KB

Citation

Mirdita, M., Steinegger, M., & Söding, J. (2019). MMseqs2 desktop and local web server app for fast, interactive sequence searches. Bioinformatics, 35(16), 2856-2858. doi:10.1093/bioinformatics/bty1057.

Cite as: https://hdl.handle.net/21.11116/0000-0002-BDBA-8

Abstract

Summary:

The MMseqs2 desktop and web server app facilitates interactive sequence searches through custom protein sequence and profile databases on personal workstations. By eliminating MMseqs2's runtime overhead, we reduced response times to a few seconds at sensitivities close to BLAST.
Availability and implementation:

The app is easy to install for non-experts. GPLv3-licensed code, prebuilt desktop app packages for Windows, macOS and Linux, Docker images for the web server application, and a demo web server are available at https://search.mmseqs.com.