Brain simulation as a cloud service: The Virtual Brain on EBRAINS

Schirner, Michael; Domide, Lia; Perdikis, Dionysios; Triebkorn, Paul; Stefanovski, Leon; Pai, Roopa; Prodan, Paula; Valean, Bogdan; Palmer, Jessica; Langford, Chloê; Blickensdörfer, André; van der Vlag, Michiel; Diaz-Pier, Sandra; Peyser, Alexander; Klijn, Wouter; Pleiter, Dirk; Nahm, Anne; Schmid, Oliver; Woodman, Marmaduke; Zehl, Lyuba; Fousek, Jan; Petkoski, Spase; Kusch, Lionel; Hashemi, Meysam; Marinazzo, Daniele; Mangin, Jean-François; Flöel, Agnes; Akintoye, Simisola; Stahl, Bernd Carsten; Cepic, Michael; Johnson, Emily; Deco, Gustavo; McIntosh, Anthony R.; Hilgetag, Claus C.; Morgan, Marc; Schuller, Bernd; Upton, Alex; McMurtrie, Colin; Dickscheid, Timo; Bjaalie, Jan G.; Amunts, Katrin; Mersmann, Jochen; Jirsa, Viktor; Ritter, Petra

doi:10.1016/j.neuroimage.2022.118973

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Brain simulation as a cloud service: The Virtual Brain on EBRAINS

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Deco, Gustavo
Department Neuropsychology, MPI for Human Cognitive and Brain Sciences, Max Planck Society;

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Citation

Schirner, M., Domide, L., Perdikis, D., Triebkorn, P., Stefanovski, L., Pai, R., et al. (2022). Brain simulation as a cloud service: The Virtual Brain on EBRAINS. NeuroImage, 251: 118973. doi:10.1016/j.neuroimage.2022.118973.

Cite as: https://hdl.handle.net/21.11116/0000-0009-F49D-3

Abstract

The Virtual Brain (TVB) is now available as open-source services on the cloud research platform EBRAINS. It offers software for constructing, simulating and analysing brain network models including the TVB simulator; magnetic resonance imaging (MRI) processing pipelines to extract structural and functional brain networks; combined simulation of large-scale brain networks with small-scale spiking networks; automatic conversion of user-specified model equations into fast simulation code; simulation-ready brain models of patients and healthy volunteers; Bayesian parameter optimization in epilepsy patient models; data and software for mouse brain simulation; and extensive educational material. TVB cloud services facilitate reproducible online collaboration and discovery of data assets, models, and software embedded in scalable and secure workflows, a precondition for research on large cohort data sets, better generalizability, and clinical translation.