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Journal Article

Time-shifted expression of acetoclastic and methylotrophic methanogenesis by a single Methanosarcina genomospecies predominates the methanogen dynamics in Philippine rice field soil

MPS-Authors
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Li,  Xin
Department-Independent Research Group Methanotrophic Bacteria, and Environmental Genomics/Transcriptomics, Max Planck Institute for Terrestrial Microbiology, Max Planck Society;

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Bei,  Qicheng
Department-Independent Research Group Methanotrophic Bacteria, and Environmental Genomics/Transcriptomics, Max Planck Institute for Terrestrial Microbiology, Max Planck Society;

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Rabiei Nematabad,  Mehrdad
IMPRS-Mic, Max Planck Institute for Terrestrial Microbiology, Max Planck Society;

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Liesack,  Werner       
Department-Independent Research Group Methanotrophic Bacteria, and Environmental Genomics/Transcriptomics, Alumni, Max Planck Institute for Terrestrial Microbiology, Max Planck Society;

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https://doi.org/10.1186/s40168-023-01739-z
(Publisher version)

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Citation

Li, X., Bei, Q., Rabiei Nematabad, M., Peng, J., & Liesack, W. (2024). Time-shifted expression of acetoclastic and methylotrophic methanogenesis by a single Methanosarcina genomospecies predominates the methanogen dynamics in Philippine rice field soil. Microbiome, 12: 39. doi:10.1186/s40168-023-01739-z.


Cite as: https://hdl.handle.net/21.11116/0000-000E-7CAE-4
Abstract
The final step in the anaerobic decomposition of biopolymers is methanogenesis. Rice field soils are a major anthropogenic source of methane, with straw commonly used as a fertilizer in rice farming. Here, we aimed to decipher the structural and functional responses of the methanogenic community to rice straw addition during an extended anoxic incubation (120 days) of Philippine paddy soil. The research combined process measurements, quantitative real-time PCR and RT-PCR of particular biomarkers (16S rRNA, mcrA), and meta-omics (environmental genomics and transcriptomics).