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Poseidon – A framework for archaeogenetic human genotype data management

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Schmid,  Clemens       
Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society;

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Ghalichi,  Ayshin
Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society;

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Lamnidis,  Thiseas Christos       
Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society;

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Aththanayaka Mudiyanselage,  Dhananjaya B.       
Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society;

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Haak,  Wolfgang       
Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society;

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Schiffels,  Stephan       
Department of Archaeogenetics, Max Planck Institute for Evolutionary Anthropology, Max Planck Society;

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Citation

Schmid, C., Ghalichi, A., Lamnidis, T. C., Aththanayaka Mudiyanselage, D. B., Haak, W., & Schiffels, S. (2024). Poseidon – A framework for archaeogenetic human genotype data management. bioRxiv: the preprint server for biology. doi:10.1101/2024.04.12.589180.


Cite as: https://hdl.handle.net/21.11116/0000-000F-3526-B
Abstract
The study of ancient human genomes, archaeo- or palaeogenetics, has accelerated in the last ten years, with now thousands of new ancient genomes being released each year. Operating at the interface of genetics, anthro-pology and archaeology, this data includes features from all three fields, including rich meta- and context-data, for example regarding spatiotemporal provenience. While archives and standards for genetic sequencing data al-ready exist, no such infrastructure exists for combined genetic and meta-data that could ensure FAIR principles across the field. Here, we present Poseidon, a framework for open and FAIR data handling in archaeogenetics, including a specified package format, software tools, and public, community-maintained online archives. Poseidon emphasises human- and machine-readable data storage, the development of convenient and interoperable command line software, and a high degree of source granularity to elevate the original data publication to the main unit of long-term curation.