5O9G

Structure of nucleosome-Chd1 complex


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.8 Å
  • Aggregation State: Particle
  • Reconstruction Method: Single Particle

Literature

Macromolecules
Sequence Display for 5O9G

Classification: DNA BINDING PROTEIN

Total Structure Weight: 406488.38


Macromolecule Entities
Molecule Chains Length Organism Details
Histone H3.2 A, E 136 Xenopus laevis Mutation: G102A
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Histone H4 B, F 103 Xenopus laevis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Histone H2A C, G 130 Xenopus laevis Gene Name(s): hist1h2aj LOC494591
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Histone H2B 1.1 D 123 Xenopus laevis Mutation: S29T
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Histone H2B 1.1 H 122 Xenopus laevis Mutation: S29T
Gene Name(s):
Chromo domain-containing protein 1 W 1468 Saccharomyces cerevisiae EC#: 3.6.4 IUBMB
Gene Name(s): CHD1 Gene View YER164W SYGP-ORF4
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
DNA (162-MER) I 208 Synthetic construct
DNA (162-MER) J 208 Synthetic construct

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ADP
Query on ADP

W ADENOSINE-5'-DIPHOSPHATE
C10 H15 N5 O10 P2
XTWYTFMLZFPYCI-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BEF
Query on BEF

W BERYLLIUM TRIFLUORIDE ION
Be F3
OGIAHMCCNXDTIE-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 4.8 Å
  • Reconstruction Method: Single Particle

Structure Validation

View Full Validation Report



Entry History

Deposition Data

  • Deposited Date: 2017-06-19
  • Released Date: 2017-10-11
  • Deposition author(s): Farnung, L., Vos, S.M., Wigge, C., Cramer, P.

Revision History

  • Version 1_0: 2017-10-11

    Type: Initial release

  • Version 1_1: 2017-10-25

    Type: Database references