Supplementary File S1 Alignments of 367 retrotransposon markers for Laurasiatheria interordinal relationships Bat8_LINE >L1MA9_3END -------------------------------------------------------------------------------A AGTGTTCTCACCACACACAAAAAAATGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTT CACAATGTATACGTATA--------------------------------------------TCAAAACATCACGTTGTAC ACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA------------------------ ---------------------------------------------------------------------- >Sus_scrofa CAAA-TAAATGCTCAACT-AGATACACTTTTGCAAATTGCGATAAGTG------CACT---AAAAAAAAAAAGAAA---- -------TCATCATAAGAAAA--AATCATAACCATGTGAGATGATAG--ATATTAACTACATTTATTGTCATAATCATTT TGCAATATATATATATTTATATTTGCAATATATGTATACTTACATACAATATATACTTGTATTAAATCATTGTGTTGTAT GCTTTAAACCAACATAA-GGTTAGGGGTTAATTATATCTCAATACAACTGGAAAAAAGAAGAAAATAGGTA---AAAGTA A----AAGAG---GATGCTCATAT----TCTTGC--ATGAAATCGAAATGTGCTT-AGAGAAACACTGAT >Tursiops_truncatus CAAA-TAAATGCTCAACT-AAATATACTTTTGCAAATTGTGAGGAGTG------CACT---ACAGAAAAAGATGAA---- -------TCATCACAAGAAAAAAAGTTGTAACCATGTGAGGTGATGG--ATGTTAACTGCATTTACTGTGGTAATCATTT TGTAATATATACTTGTG--------------------------------------------TCAAGTCATTATGTTTTAC ACCTTAAACTAATGCAA-GGTTATATGTCAATTGTATCTCAATAAAGCTGGAAAAAAAG------AAGAAA---AAAGTA AAAAAAGGAG---GATGCTTATAT----TCTTGC--ATGGAATCTAAATATGTTT-AGAAAAACACTGAT >Myotis_myotis CAAA-TAAATGCTCAGCT-AAATATGCTTTTGTAAATTGTGATAAGTT------CACT---AAAGG--AAGAAGAG---- -------TCATTACAAGAAAAA-AATTATCACTATGTGAGGTGATGG--ATGTTAATTACATTTATTGTTGTGATCATTT TGCCATATGTACATATA--------------------------------------------GCAAATCAT--TGTTATAT ACCTTAAACTAGCACAA-TATTACATGTTCATTATATCCCAATAAAACTGGAAGAAAAATTT----AAAAA---AAAGTA AAAG-AAGAG---GATGCTTATAT----TCTTGC--ATGAAAT--AAATATGCTT-AGGGGAATGATGGT >Rousettus_aegyptiacus CAAA-TAAATGCT--GTT-AAATACGCTTTTACAAACTGTAATAAGTG------CACT---AAAGGAAAAGAAGAG---- -------TCATCACAAGAAAAATAGTTGTCACTCTGTGAGGTGATGG--ATGTTAACTACATTTATCGTGGTGATCATTT TGCAGTATATACAGATATT------------------------------------------TCGAATCATTATGTTGTAC ACGTTAAACTAATACAA-TGTCATATGTCACCTTTACATCAATAAAACTGGGGAA------AAGGGAAAAA---TAAGTA A----AAGAG---GAGGCTCCTAT----TGTTGC--ATGGAATCTAAATATGTTT-AGAAGAATGCTGGT >Condylura_cristata CAAA-TATACCCTCAAGTAAAAAATGCAAATGTAAAGTGTGATAGAAGATTCATCACA---AAGAA-----AAAAG---- -------------------------------------------------------------------------------- -------------------------------------------------------------TTAA--------------- --------------------------------------TCAATAGAACTGGGGGA----------TGGGAA---AAAGTA A----AAGAA---GATGCTTATAT----CCTTGC--ATGGAATCTAGATGTGTTTAAAAAAAATGCTGGT >Erinaceus_europaeus CACATTAAAAACTTAACT-AAATATATTTTTGTAAATTATGATGAGCG------CATG---AAAGA-----AGAAT---- -----------CCTAAGAAGAAAAAT-----CTATAGGAGATGATGG-----ATGATTACATTTCTTTTTATAATTATTT TGTTACATATA--------------------------------------------------TCAAATTGT-ATGTTGCAT ATTTTACACTGATACAA-TGTTTTGTGTCAATTATATCTCAATGAAACTGGGAGA----------AGGAAA---GGAGTA A----AATAG---GACACTTCTATCTACTTTAGC--ATGGAATCAGAATATATTT-AGAAGAATACTGAT >Canis_familiaris CAAA-TAAGTGCTCAACT-AACTATGCTTCTGCAAACTGTGGTAAGTG------CACT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------AAAGGA AAAG-AAGAG---GCTCCTCATAT----TCTTGAATATGGAATCTAAAT--GTTT-AGAAGAACACTAAT >Felis_catus CAAA-TAAATGCTC-ACT-AAATATGCTTTTGTAAACTGTGGTAAGTG------CACT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------GAAG-- -AAG-AAGAG---GCTTTTCATAT----TCTTGCATATGGAATCTAAAT--GTTT-AGAAGA---CTAAT >Manis_pentadactyla TGAA-GAAATGCTCAGCT-ATGTATGCTTTTGCAAATTATGATAAGTG------CACT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------AAAGAA AATG-AAGAG---GATGCTCATAT----TCTTGC--ACAGAATCTAAATATGTTT-AGAGGAACGCTGAT >Equus_caballus CAAA-TAAACACTCAACT-AAATATGCTTTTGCAGACTGTGGCAAGTT------TACT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------AAAGAA AAAG-AAGAT---AAGGCTCATAT----TCTTGC--ATGGAATCTAAATGCATTT-AGAGTCACGCTGAT >Ceratotherium_simum CACA-CAAATGCTCAACT-AAATATGCTTTTGTAAATTGTGGCAAGTG------CATT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------AAAGAA AAAG-GAGAG---AATGCTCATAT----TCTTGC--ATGGAATCTAAATGCGTTT-AGAGGAACACTGAT >Homo_sapiens CAAA---------CACTC-AAATACACTTTTGCAAATTATGATAAGTG------CACT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------AAAGAA AAAG-AAGAG---AATGCTCATAT----TCTTGC--ATGCAGTCTAAGTGTA-TA-AGAGGAATACTGGT Bat33_LTR >ERV54-EC_LTR ---------------------------------------------------------------TGTT-AAAAACAAGACA ACAGGCC---CAAAATGGAGTCACTTATGCTAAGCCCCACGTCACCAAACCGAGACTTAACTTAATTACAGTTTCGGCTC TCCCAGAAATGGAATCTTAAACCAGTCAATCAGGAATCACCTGATC--AGCACTAG-TTAGGTAATCTGCCTGATAGACC CCTGCCATCCCCTA-AAGGAAAGTAACCTTGCAATAACCAATCCAC-----------TTTTTTGC--------------- -CTAGTATAACTTCCTTGTTCCTGCTCCCTTCTGCCTATAAAAGTCT-TTCATTTTGTACAGCTCCTCGGAGCTCCTTTC TATCTGCTAGATTGGATGCTGCCCAATTCATGAATCATTGAATAAAGCCAATAAGATCTTTAAAATTTACTCAGTTGAA- ---TTTTGTTTTTTAACA-------------------------------------------------------------- ------------------------------------------------ >Canis_familiaris TGTGACAC-AACCACATTTTTAGA-TTCTCTCAC-TACTCATATATTTTAAAA---GCAT---TGTTGAAAAACCAGACA GTAGGCC---CAAAATGGAGTCACTTATGCCAAGCC-CACATCTTTACCCCAAAACTTAA-TT------AGTTTCAGCTC TCTCAGACTTGGAATCCTAAACCAGGCAATTAGGAGTCATCTGATC--AGCATTAG-TTAAATAATCTTCCTGATAAATG TCTACCATACCCC--AAAGGAAAATACCCTGCAATAACTAATTGCCT-----------TCTTTGC--------------- --CTGTACAACTCCCCTGTTTCTGCTCCCCTCTACTTATAAAA-TCCTTTGCCTTGCATTAGCTCTTTGGAG---CTTTC TGTATGTTAGATTGGATGTTGCTCAATTCAAGAATTTCTGAATAAAGCCAGTAAGATCTTAAACTTT-ACTTATTTGAT- ----TTCTCCTTTGAATA---GCAC---TATGCTGTTTTGTTGTTGT--TTTGTTTGCGTTTTGTTTTTGCT-------- --TTTGTTTTTTT-AAGCACATGAGATGTTCTTAGGATTGTTGTAATT >Lynx_canadensis CATGATGC-AACCACATTTTTAGG-TTTTCTCTCACTACTATATA-TTTAAAA---GCAC---TTTT-CAAAACCAGACA GTAGACC---CAGAATGGAGTCACTTATGCTAAGCC-TACATCTTCAAACCTAAACTT-----AAGTACAATTTCAGCTC TCTCAGAAATGGA-TCTTAAACAAGTCAGTCAGGAATCATCTCATCTAATCATCAGATCATCTCATCTGTCTGATACACC TCTCCCATGCCCTA-AAGGAAAGTAACCTTGCAATAACTAATCACCT-----------TTTTTGC--------------- -CTAGTACAACTTCCCTGTTTCTGTTACCTTCTGTTTATAAAA-TCTCTT-GCCTTGTATAGCTCTTTGGAGTTCCTTTC TATCTGTTAGATTTGATGTTGCCTGATTCATGAATTGCTGAAGAAAGCCAGTAAGATCTTAAAATT--ACTTAATTGAT- ----TTCTTTTTTTAACA---GCAC---TATGGTGTTTTGTTATTGTTATTTGTTTGTGT------TTTGCT-------- --TTTGTTTTTTT-AAGCACATGAGATGTTCTTAAGATTATTGTGATA >Manis_pentadactyla CATGATGC-AACCAAATTTCCAGA-TTTTCTCAC-TTATCATATA-TTTAAAA---ACAC---TGTT-AAAAACAAGACA ACAGGCA---CAAAATGTAGTTGCTTATGCCAAGCCCCATGTCACCAAACCAAGACTT-----------AGTTTTGACTC TCCCAGAAATAGAAATTTAAGCCAGTTAGTCAGGAATCACCAGATC--AGCATTAG-TTGGGTAATCTGTCCGATAAACA CTTGCCATCCACTA-AAGGAAAGTAACATTGCAACAACTGATCTGCTTTAAAATTTATTTTTTGC--------------- -CTACTACATCATCCTTGTTTCTGCTCCCTTCTGCCTACAGAA-TCTCTT-GTCTTGGATAGCTTTTCAGAGTTCCTTTC TGTCTGCTAGATTAGATGCTGCCCATTTCATGAATCACTGAATAAAACCAGTAAGATTTTAAAATTTAATTCAGTTGAA- --TTTTGTTTTTTTAACA---ACAC---TCG--------------------------------------GCT-------- ----GTTTTTTTTAAAGCACATGAGATGTTTTTAAGACTGTTGCAATA >Sus_scrofa CATGATGC-AACCAAATTTCCAGA-TTTTCTTGC-TTCTCAAATA-TTTAAAA---GCAC---TGTT-AAAAACAAGAAA ATGTGCTAAAAAAAATGGAGCCATTTATGCTAAGCCCCATGTCAGCCAACTGACACTT-----AGTTACAGTTTTACCTC TACCAGAAAGGGAATATTGAACCAGTCAATCAGGAGTCATCTGATC--AGCACTAG-TTAGGTCATCTGCCTGATAAACC CCTGCTATCCC---TACAGGAAGTAAACTTGCAAGAGCCAAGCCCCCTC---------TCCTTGCCCCCCACCCTTTTCC TCCAATATAACCTTCCTGTTCGAGCTTCCCTCTGCCTGTAAAA-ACTCTTGCCTTTATATGGTTCTTTGAAGCTCCTTTC TGTGTGCTGGATGGGATGCTGCCTAATTTATGAATCACTGAATATAGCCAATAAGGTCTTAAAAATTCACTCAGTTGAA- -TTTTTTTTTTTTAAAGC---GCAT---TCTGGGTTTGTTTTTTCTTTCCTTT-------------TTTTCT-------- --TTTTTTTTTTT---GCACATGAGATGTTTTTAAGATCATTGCAATA >Tursiops_truncatus CATGATGC-AAACACATTTCCAGA-TTGTCTTAC-TTCTCAAATA-TTTAAAA---GCGC---TATT-AAAAACAAAACA ACAGGCC---CAAAATGGAGTCATTTATGCTAAGCCCGATGTCACCAAACTGAGACTT-----ACTTACAGTTTTGCTTT TCCCAGAAATGGAATATTAAACCACTTGATCAGGAATCATCAG-------CGTTAG-TTAGGTAATCTGCCTGATAAACC CCTGCTATCCC---TAAAGGAAGTAACCTTGCAAGAACCAATCTGCTC----------TTTTCGC--------------- -CCAGTGCAACCTCCCTGTTCCTGCTCCCTTCGGTCTATAAAA-TCTCTTGACTTT-TATAGCTCTCTGAAGCTCCTTTC TGTCTGCTAGATGGGATGCTGCCTGATTCATGAATTGCTGAATAAAGCCAATAACATGTTAAAACTT-ACTCAGTTGAA- --TTTTGCTTTTTTAACA---GCAC---TAT--------------------------------------GGT-------- -----GTTTTTTAAAAGCACGTGAGATGTTTTTAAGATTGTTGTAATA >Equus_caballus CATGATGC-AACCGAATTTTCAGA-TTTTCTCAC-TTCTCATATA-TTTAAAA---GCAC---TGTT-AAAAACAAGACA ACAGGCA---GAAAATGGAGTTGCTTATGCTAAGCTGCACGTCACCAAACTAAGAC-------GATTATAGTTTCGGCTT TCCCAGAAATGGAATCTTAA------------------ATCTGATT--GGCATTAG-TTAGGTAATCTGCCTGATGAACC CATACCATCCTCTATAAGGAAAGTAACCTTTCAATAACCAATCCACTTT---------TTTTGGC--------------- -CTAGTACAAATTCCTTATTCCTGCTCCCTTCTGCCTATAAAA-ATCTCTTGCCTTGTATAGCTCTTCAGAGCTCCTTTT TATCTACTAGATTGGATGCTGCCTGATTTATGAATTGTTGAATAAAGCCAACAAGATCTTAAAATTT-ATTCAGTTGATT TTTTTTTTCTTTTTAACA---GTAC---TAT--------------------------------------GCT------TT TTTTTTTTTTTTTAAAGCACATGAGATGTTCTTAAAATTGTTGCAATA >Ceratotherium_simum CATGATGT-AACCAAATTTTCAGA-TCTTCTCAC-TTCTCATACA-TTTAAAA---GCAC---TGTT-GAAAGCAAGACA ATAGGCC---CAAAATGGAGTCACTTATGCTAAGCCGCACATCACCAAACTGAGAC-------AATTACAGTTTTGGCTT TCCCAGAAATGGAATCTTAAGCCAGTCAATCAGGAATCACCTGATT--AGCATTAG-TTAGGTAATCTACCTGAAAAACC CCTGCCATCCCCTATGAGGAAAGTAACCTTTCGATAACCAATCCGCTTT---------TTTTGAC--------------- -CTAGTACAACTTCCTTGGTCCTCCCCGCTTCTGCCTAT---------CTTGCATTGTATAGCTCTTCAGAGCTCCTTTC TATCTACTAGATTGGATGTGGATTGATTTATGAATTGCTGAATAAAGCCAACAAGATCTTAAAATTT-ACTCAGTTGAA- ----TTTTTTTTTTAACA---GTAC---CAT--------------------------------------GCT-------- -----GTTTTTTCAAAGCACATGAGATATTTTTAAGATTGTTGCAATA >Myotis_myotis TATGATAC-AACCAAATTTCCAGA-TTTTCTCAC-TTCTCATATA-TTTAAAA---GCCC---TTTT-GGAAACAAGACA ACAGACC---CAAAATGGAGTCACTTATGCTAAGCTCTATG--ACCAAACCAAGACTT-----AATTACAGTCTCAGCTC TCCCAGAAATGGATTCTTAAACCAGTTAATCACCAGTCACCTGGGT--AGTA-----TTAGGTAATGTTCCTGATAAGCA CCTGCCATCCCTTA-AAGAAAAGTAACCTTACAATAGCAATCTGTTTTTG--------TTTTTGC--------------- -CTAGTAAATCTTCCTTGTTTCTTCTCTCTTCTGTGTATAAAA-TCTTTT-GCTTTATATAGCTCTTCAGAGATCCTTTC TATCTGCTAGACTGG-TGCTACCCGATTCGTAAATGGCTGAATAAAGCCAATAAGATCTTAAAATTT-ACTCAGGTGAC- ------TTCTTTTTAACA---GCAC---TGT--------------------------------------GCTGGTTTTTG TCTGTTTTGTTTTAAAGCATATGAGATGTTTTAAAGATTGTTACAATA >Rousettus_aegyptiacus TATGATGC-GACCGAATTTCCAAA-TTTTCTTAC-TTCTCATGTA-TTTAAAG---GCAC---TGTT-CAAAACAAGACA ACAGTCC---CCCAATGGAGTCACTTATGCTAAGCCCCATGTTACCAAACTGAGACTT-----AATTACAGTTTCAGTTT TCCAAGAAATGGAATCGTAAACCAGTCAATCACCAAGCACCTGATA--AG----TG-TTAGATAATCTGCCTGATAAACC CTTACCATCCCCTAAAGCAACAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNN---NNNN---NNN--------------------------------------NNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Condylura_cristata TACGATGC-AACCAAATTTCCAGA-TTTTCTCAC-TTCTCATATA-TTTAAAA---GCAA-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------TAT--------------------------------------GCC-------- -----ATTTATTTAAAGCACATGAGATGTTTTTAAGATTGTTGCAAAA >Sorex_araneus CATGATGCAAACCAAGTTTTCAGATTTTTCTCAC-TTCTCATGTA-TTTAAAA---GCAC-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------TAT--------------------------------------GCC-------- -----ATTTATTTAAAGCATAAGAGATATTTTTAAGATTGTTGCAATA >Heterocephalus_glaber CACTACAT-AAGCAAATTTCCAGA-ATTTCTCAC-ATTTCATATA-TTCAAAA---GCAC-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------TAT--------------------------------------ACC-------- -----ATTTACTTAAAGCACATGAGATGTTTTTAAGATTGCTGCAATC Bat34_LTR >MER57LA -------------------------------------------------------------T-GTTAAATTAATTAAACA AGGAGGCCATTAGACTGAGGTGGTTCTAATGCCTTAGCAGCCTACGTAAGCAAACCAAA----ACCTAAGCCTGTAAATG CCTCAAGG---------------------TTAAGAAATCAAAACCTAAG---GACAACCAATCACAAACAGCCAACTAGG CTTTCCCAAATAAGGCAACTGCTTAAGCTATAGCCAATCAAATAATTTCCTTGCTTTGCTTCTGCCTCTTCTCTATAAAA GTCTTTCCCCTAGCTCCTGTCGGTGGAGCGCTCC--TAACCACTTCCTGGTTTGGTGCTGCCTGATTTGAATCGATTTTT GCTCAAATAAACTCTTAAAA-TTTTTAATATGCCTCAGTTT-ATC-TTTTAACACA------------------------ ------------------------------------------------------ >Canis_familiaris ACATGAGGTCTAAGATGCTTCTCCAGTTTGTGAGAATTACTTCAACATCT---GAACT---T-ATTAAATTAATTAAACA ACAAA-----------------------------------CCTATATAAGCAAAGCAAA----CTCTAAGGCTGTAAATG CCTCAAGG---------------------TTATAAAATTGAAACCTAAG---TATAACCTATCCTAAGAAGCAAACTAGG CT--------------------TTAAACTA----CAATC-AATAGTTCCTTTACTTTGCTTCTGCCTTTTCTCTATAAAA ATCTGT-CCCTAGCTGCTCTCCATGGAGTGTTCC--AAACCACTT-----TTTCATGCTG----ATTCAAATCAGTTTTT GTCCAGATAAACTCCTAAAAATTTTTAACATGCCTCAGTTT-ATCTTTTTAAC----------------------AACCT ---CTAGGAGTTATGAACC-TTGCTCTCAAACTCAAGTGTGCAAGAAATGTCTT >Felis_catus ATAAGGGGTTTAAGATGCTTTTCCAGTTTGTGGGAATTGCTTCAACATTT---GACCT---T-GTTAAATTAATTAAACA ACAAA-----------------------------------CCTACATAACCAAAGCAAA----ATCTAAGGCTGTAAATG CCTCAAGG---------------------TTATAAAATTGAAACCTAAGTATAACAACCAATCCCAAACAGCAAACTAGG CT--------------------TTAAGCTGCAGCCAATC-AGTAGTTTCCTTAGTTTGCTTCTGCCTTTTCTCTATAAAA ATCTCT-CTTCTGCTGCTCTCCATGCAGTGCTCCAAAAACCACTTCC-AGTTTGGTGCTGTCCGATTCCAATTAGTTATT ATTCAGATAAACTCCTAAAA-TTTTTCACATGCCTCAGTTTTATC-TTTTAAC----------------------AGCTC ---CTAGGAGTTATGAACC-TTGCTCTCAAGCTCAAATGTGCAAGAAATGTTTT >Manis_javanica ACATTGGGTCTAAGATCATTCTCTAGTTTGTGATAATGTCTTCCATAGTT---GACCT---T-GTTAAATTAATTA---- ACAAAGCCATGAGACTGAGATGGCTCTAAGACCATGGCAGTCTACATAAGCAACTCAAA----ATCTAAGCCTGAAAATG CCTCAAGG---------------------TTCTCAAATTGAAACCCAAG---GAC-ACCAATCACCAACGGCCAACTAAG TT--------------------TTAAGCTACAGCCAATC-AATAATTTCCTTACTTTGCTTCAAATTTTTCTCT--AAAA GTCTCT-GCCTAGCATGTGTGGGTGGAGCACTCC--AATCCATTTCC-AGTTTGGCGTTGCCTGGTTCAAATAGATTTTT GCTCAAAT-------------TTTTTATTATGCCTCAATTT-GTC-CTTCAAC----------------------AGCTC ---CTAGGAGTTATGAACC-TTGCACACAAACTCAAGTATGCAAGAAATATCTT >Sus_scrofa ACCTATGGTCCAAGATGCTTCTCCAGTTTGTGGCAATGACTTCAATATT----GACCT---T-GTTAGATTAATTAAACA AGGAGGCCATTAGACTGAGGTGACTCTAATGCTGTAGCAGCCTACATAAGCAAACCAAA----ATCTAAGACTGTACATG CCCCAAGGTTATAGAGCCTCAACATTCAATTATAAAATTGAAACCTAAG---GACAACCAATC----ACAGCCAACTAGA CT--------------------GTAAGCTTTAACCAATC-AATAATTTCCTTACTCTGCTCCCATCTTTTCTTT------ -------CCCCAGCTCCTATTGGTAGAGTGCTCC--AAGCCACTTCC-ACTTTGGAGCCACCTGATTCAAACTGATTTTT GCTCAGA-AAACTCCTAGAA-TGTTTCACATGCCTCAG---------TTTAAC----------------------AACCT ---CTAGGAGTTCTGAACC-TTGCTTCCAAACTCAGGTCTGCAAGAAATGTCTT >Bos_taurus ACTTGTGGTCTAAGATGCTTCTCCAGTTTGTGGCAATGATTTCAATAGTT---GACCT---T-GTTAAGCTAATTAAACA AGGAGGCCATTAGACTGAGGTGATTCTAATGCTACAGCAGCCTGCACAAGCAAGCCAAA----ATCTAAGCCTG-ACTTG CCTCTAGG---------------------TCATGTAATTGAAATCTAAG---GACATCCAATCACAAACAACCAATTAAG CT--------------------TCAGGCTATAACCAATC-AATAATTTCCTTACTTTGCTTCCACCTTTTCTCT------ -------CCCCAGTTCCTGTTGGTGGAGTGTTCC--AAGCTATTTCC-ACTTTAG----------TTCAAATTGTTATTT GTTCAAATAAACCCCTAAAA-TGTTTAATATGCCTCAGGTT-ATC-TCTTAAC----------------------AACTT ---CCAGGAGTTATGAAAC-TTGCTCCCAAACTCAAGTATGGAAGAAATGTTTT >Myotis_myotis ACCTGGGGTCTCAAATGC-TCTCCAGTTTGTGGCAATGACTTCAATATTC---AATCT---T-GTTAAATTAATTAAACA AGGAGGCCACCAGACTGAGGTGGCTCTAATGCCG-GACAGCCTACACAAGCAAACCAAA----ACCCAAGCCTGTATATG CCTCAAGG---------------------TTATGAAACTGAAACCTAAG---GAC-ATCAATCACAAGCAGCCAACTAGG CT--------------------TTAAGCTATAGCCAATC-AATAATTTCCTTACTTTGCTTCCACTTTTTCTCTTT--AA GTCTC--TTCTATGTCCTGTTTGTGGAGTGCTCC--TAACCGCTTCC-AGTTTGGTGCTGCCTCATTTGAATTGATTTTT GCTCAAATAAACTCCTAAAATTTTTTAACATGCTTCAATTT-ATC-TTTTAAC----------------------AGACT ---TTAGGAGTTATGAACC-TTGTCCTCAAACTTAAGTAAGCAAGAAATGTCTT >Rousettus_aegyptiacus GCATGAGGTCTAAGATGCTTCTCCAGTTTGTGGCAACAACTTTAATATTC---AACCT---T-GTTAAATTAATTAGACA AGGAGGT--TTAGACTGAGGTGGCTCTAATGTCATGGCAGCCTGCATAAGTAAACCAAA----ACCTAAGCCTGTAAATG CCTCAAGG---------------------TTATGAAATTGAAACCTGAG---GACAACCAAGCACAAACAGCCAACTAGG CT--------------------TTAAGCCATAGTCAATC-ACTAACTTCATTGTTTTGCTTCCACCTTCTCTCTATAAAA GTCTC--TCCCAGTTCCTGTCAGTAGAGAACTCC--TAACCACTTCC-AGTTTGACGTTGCCTGATTTGAATTGATTTTT GCTCAAA----CTCCCAAAA-TTTTTAATATGCCTCAATTT-ATCTTTTTAAC----------------------AGACT ---CTAGAAGTTATAAATC-TTGCCCCCAAACTCAAGTAGACAAGAAATGTCTT >Condylura_cristata ACATGTGGTTTAATATACTTC---AGTTTATGGCAG-GACAGCAATACCT---GACCC---TCGTTAAATTAATTAAACA AGGAGGC--------TGAAGTAGTTTT--CTCATAGGTAGCCTAATTAAACAAACTAAAATCTATCTAATCCTGTAAATA CCTGAAAT---------------------TTATGAAAATAAAACCTAAG---GGCAACTCATCACAAACAGCTAGCCTCG TT--------------------TT----CATAACTAATC----AATTTCTTTCTTTT-----TGCCTTTTCTTCATAAAA GTCTCT-TTCCAGCTCCTGTCTAGGGAGCGCTCT--TACTGAAGTTC-ATTTTGGTGC------ATTCAAAATGGTTTTT GCTCAAATAAACACTTAATG-TTTTTAATATGCACCAGTTT-ATCTTTTCCTCTAGGAGTTAATCTTCAGTT---AACTT ---GTAAGAGTTATGAACA-CTGACCCCAAACTAAAGTATGTAAGAAGGCCTCT >Solenodon_paradoxus ACACGTGTTCTAAGATGCTTCTCCAGTTTGTGGCAATGACTTCAATATCT---GACCT---T-GTTATATTAATTAAATA ATGAGACCATTAGACTGAGGTGATTCTAATACCATGGCAGCCTGTGTAAACAAATAGAA----ATCTAAGCCTATAAATG ACTGAAGG---------------------TTATGAAATTAAAACTTAAG---GACAATCAGTCACAAACAGTCAACAATG CT--------------------TTAAGAGATAGTGAATT-AATAATTACCTTACTTTACTTCTGTCTTTTCTCTGTAAAA GTGT---CCCCTGCTCCTATCAATAGAGTACTTC--CAATCACTTAT-GGTTTGGTGCTATCTAATTC-AATAGATTTTT GCCCAAATAAACTTCTACATTTTTTTCATATACCTTGGTTG-ATCTTTTGAC-----------------------AACCT ---CTAGGAGTAATGAATC-TGGCCTTCAAACTCAAGTATGCAGGAAACATCTG >Equus_caballus ACATATGGTCTAAGATGCCTCTCCAGTTTGTGGCAGTGACTTCAATATTT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------GACCT ---CTAGGAGTTATGAACC-TTGCCCCCAAACTCCTGTGTGCAAGAAAAGCCTT >Ceratotherium_simum ACATGTGGTCTAAGATGCTTCTCCAA-TTG-GGCAATGACTTCAGT-TTT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------GACCT ---CCAGGAGTTATAAATC-TCGCCCCCAAAGTCAAGTATGCAAGAAAAGTCTT >Homo_sapiens ACATAGAGTCCAAT-TGCTTCTCCAGCCTGTGGCAATGACTTCTGTACTT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------GACCT ---CTAGGAGATATGACTCATAGCCTTCAAACTCAAACATGCATGATAGATCCT Bat35_LTR >MER21C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------TGTGTAGGAAAAAACAAAC-----------TGT TTTTCTC---TACTCTCACA------------------ACACTTCT-GNCACCAA----ATGTGT----------GGGGT TTTTCCCACACACCAAGCAATTCTCCAGCGGACACCAGCTGGGTGTCCTA--------------------------CAAT TCAATTCAATTCTGACACTATCTACCTGGAGNTAGCGTCAGATCCCACAGGTTAAGGGCTCAGTCCCACAAGACTGCCCC --------------------CACTTCAGACGCCAATCGCAAGT--------CCCAGGTTGTGACCTGTACTTCTGACCGA CC-GGCTATAAATCGGGGGTTCCCA-CGACCCCC---TCCTCGGGTTCGATAATTTGCTAGAGCGGCTCACAGAACTCAG GGAAACACTTTACT-TACGTTTACCGGTTTATTATAAAGGATA----TTACAAAGGATACAGATGAACAGCCAGATGGAA GAGATGCATAGGGC--AAGGTATGTGGGAA---GGGGCGC-GGAG---CTTCCATGCCCTC----TCCGGGCGCGCCACC CTCCCGGCACC-TCCACGTGTTCAGCAACCCGGAAGCTCTCCGAACCCCGTCCTTTNGGGTTTTTATGGAGGCTTCATTA CGTAGGCATGATTGATTANATCATTGGCCATTGGTGATCAACTCAACCTTCAGCCCCTCTCCCCTCCCCGGAG--GTCGG GG-----GTGGGGCTGAAAGTTCCAACCCTCTAATCACATGGTTGGTTCCCCTGGCGACCAGCCCCCATCCTGAGGCTAT CCAGGAGCCCCCAGCCAAGAGTCACCTCATTAGAACAAAAGACGCTCC---------TATCACCCA--GGAAATTCCAAG GGTCTTAGGAGCT-CTGTGTCAGGAACCGGGGTCAAAGACCAAA-----------TATTAGAA--CAAAAGATTCTCCTA GCGCCCCTAT---------------------------------------------------------------------- --------------------------- >Canis_familiaris CCTTAGTAAAATCCTTTGCTTAGTGTACATAC----TAAATATT------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------CAATGGCTTGGATGTTAATA---ACTG---TAT-TAGGAAAGCCTGTGT---TTCTCTTGTAT CTTTCTC-----CTTTCACACAGAACATTTTACTTCTAACACTTCTGGTCACCAAGTGGGTGTGTGTGTGAGGGGGGGGT GGGGTTGA-ACACCAAGCAGTTTTGT----GACACCAGCTACGTATCCTA--------------------------CAGT TT--CTCAGTTCTGACTCTATCCACCTGGAGATAGTGTCA----CCCAAAGTTAAAAGCTCAGCCCCACAAAACTGCCTC --------------------TCCTCCAAATACTAATCACAAGTAGTAGATCCCCAGGTTAC--CCACAATTTTTATCCAA CTTGGCTACAAATCGGAGGTTCCCA-TGAGCTCTTTCCCCTTAGATTCGGTTATTTGCTAA-----TTTACAGAACTTAA GGAAAAAATG-----TAAGTTTGCCAGTTTAT--TAAAGGA-------------------------ATAACCAGAT-GAA GAGATACATAGGAT--GAGGTCTGGGAGGGTTCCAAATGCAGGAG---CTTCT-TCCTGGTAGATTTGGGGTA-GTCATC CTCCTGGTAGG-TAGATGTGTTCACCAGCTGGAAAGCTTTCC--ACTCCATATTACTGGAATTTTAT-GAGGCTTCCTCA CATAAGCATGATCAACA----------------------AACTCCATTTCTAGCCCTTCTCCCGTCTCTAAAGAAGTGGG AA-----GTTGGGCTGAAAATTCCAAGCTTATAATCATG-GCTTGATCTTTCTGGGGACCAGCCCCC-----------AT CCAGGAGCCC---ACCAAGAGTCACCTCATTAGAACAGGAAATGCCCCTAGTGCTCTTATCACTAAGGGGAATTTACAAG GGTTCTAGGAGCC-CTGTGCCAGGCACTTGGGAGGAAGACCAAATAT-------TTATTATAAAGCACAGGATCACAGTC -------------ACTT---AATG--TTAC--TTTTTTCAGGATCATTTGTGT--------TTCTTTCCTGATATTTTTG TTATTA------CTGTGGGGAAAAGAT >Felis_catus CCTTAGTAAAAGCCTTTGTTCAACATAAAGCC----TAAGTATT------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------AAATGGCCCAAGTGTTGATA---ACTG---TAT-TAGGAAAACCTATAG---TTCTCTTGTGT CTTTCTC-----CTTTCACTCAGGACGCCTCACTTCTAACACTTCTGGTCACCAGATGTATGTGTGTGG------GGCGG GTGGTCCA-ACACCAA-----TCTTT----GGCACCAGCCGGGTGTA-----------------------------CAGT TTAACTCAATTCTGACTTTGCCTACCTGGAGGTAATGTCAGATCCCACAGGTTAAGAGCTCAGCCCCACAGAACTGCCCC C-------------------CACTCTAGATACTAATCACAAGTAGTAGATCCCCAGGTTAC--CCACAACGTTTGTCCAA CTTGGCTACAAATCACACGTCCCCA-TGACCGCTTTCCCCTTAGATTTAGTGATTTGCTAGAACAGTTCACGGAACTCAG GGAAACACT------TAAGTTTGCCAGTTTAT--TAAAGGTTA---TGAAAAAAGGATACAGATGAA----------GGG GAGATACATAGGGT--GAGGTCTGGGAGGGTCCCAAATGCAGGAG---CTTCT-TCCTGGTGGATTTGGGGTGTG-CACC CCCCTG-------------------------GAAAGCT-TTCAAACCCCATACTACTAGGATTTTGTGGAGGCTTCCTC- CGTTGGCATGATCAATA----------------------AACTCCATTTCCAGCCCCTTTCCCCTCTCTAAAGAAGTGAG TG-----GTGGGGCTGAAAATTCCAAACTTAGAAGCATG-GCTTGGTCTTTTTGGGGACCAGCCCCC-----------AT CCAGGAGCCC---ACCTAGAATCACCTCATTAGAACAAAAGATGCTTGTAGGGCTCTTATCACTTA--GGAATTTACAGG GGTTTCGGGAGCC-CTGTGCCAGGGACTGGGGAAGAAGACCAAATAGATAT---TTATTATAAATCACAAGATCACAATC -------------ACTT---AATA--TTACTTTTTTTCCAAGACCATTTGTGT--------TTCTTTGCTGATATTTTTG TTTTTAACTCTGCTGTGGGGAAGAAAT >Manis_pentadactyla CCTTAGTAAAGTTCTTTGCTCACCTTACATGCTCAGTAAATTGA------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------TAACTGCT------------------------T-TGGAAAAACCTACAGATCTCTTCCTGTGT CTTTCTCCTTTACTTTTACACAGAATGCTTAACCTTTGATGCTTCTGGTCACCAA----ATGTCT----------GGGGA GATTTCAA-ATACCAAGCAATTCTGA----GACACCAGCTTGTTATCCTATAATTTAGATTTTAACACAATTAAGTCAAT TTAATGCAATTCTGGCTCTATCTACTGGGAGACAGCATCAGTTCTCACTGGTTAAGGACTCAACCCAA--AGACTGCCCC C---------------------ATTCAGATGCCAATCACAAGTACTAGGTCCTGAGCTTAC--CCACAGCTTCTGTCCAA CTTGGCTGCCAATCAGAGGTTTCAG-TGACCTTCAACCCCTTGGATTCAATTATTTGCTAGAACAGCTCACAAAGTTCAA GGAAACACTTAACT-TATATTTGCCAGTTTAT--TAAAGGATA----TTATAAAGGATACAGATGAACAGTCAGAT-GAG GAGATACATAGGGC--AAGGTTTGCGAGTGTCTTGGGTTCAGAAG----CTCTGTCCCTCCTGAATGGAGATG-----TC CTCCTG---------AAGTGTTCACCAGGCTGCAAGTG-TTCGAACCCCATACTGTTGGGATTCTGTGGGGACTTCCTAA TGTAGGCACAATTAGCT-------------------ATTAACT-CATTCCCAGCCCCTCTCCCCTCCCGAGAGAAGTGGG GGATGGGGTGGGGTTGACAGTTACAAAATTCTAATTATG-GCTTGGGTTTTCTAGGGACCAGCCCCCCT----------- -----AGCCT---ACCCATAGTCACCTCATTAGAGCAAAAGGTGTTCCTAGTG---------CTTA--GGGATTTACAAG GGTTTCAGAAGCC-CTATGTCAGGGACTGGGGAAAAAGACCAATTATAAATAT-TTATTATAAATCACAGTAACACAATA -------------AC-----AATA--TTAC--TTTTCCCAAGCACATTTGTAT---------TCTTTACTGATGTTT--G TTTTTCCTATAATAGTAGGACAA-GAG >Sus_scrofa CCTTAGTAAA---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------TAACTCAAATGTTGATA---ACTA---TAG-AGGGGAAACCTGCATTTCTCCTCCTGTAT ATCTCTT--TTACTTTCATGCATAATGCTTCACTTCTGACACTTCTAGTCATTAA----ATGTGG----------GAGGG TTTTTCCA-ATACCAAGCAACTCTGC----GACACCAGCTGGATG----------------------------------- -----ACAGTTCTGACTCTATCTGCCTG--GGTAGCATCAGATCCCACAAGTGAAGGGCACAGTCCCACGGGACAGCCGC CACCCTCACCCCATCCTC--CACTGCACCTGCCAATTGTATGTAGTA-------------------CAACGTCTATCTGA CTGCGCTGTAAATCGGAGGTTTCCA-TAACCTCCTCTCCCTTGAATTTGATTATTTGCTA-AACATCTCACAGAACTCAG GGAAATACTT-ACT-TCCAATTGCCAGTTTAT--CAAAGGATA----TAATATAGGGTGAAGATATACAGCCAGCT-GAA GAGACAAATAAGGT--GAGGTCTGGG-GGGTTCAGGGTGCAAGAGCCACCTCTGTCCCTGTCCATTTGGGATACGTCACC CTCCTGGTATG-TGAATGTGGTCACTAACCTGGAAGTG-TTCAAAGCTCATGCTATTGGGATTTTAAGGAGGCTTCTTCA CATGGACAAGACCAATT-------------------CTTAGCTCCATTTTCAGCCCCTATC---TCTCCAGAGGAGTAGA GG-------GAAGCTGATAATTCCAAGCTTCTAATGATG-GCTTGGGCTTTCTGGGGGCAAGCTTCC-----------AT CCAGGAGCCC---ACCCAGAGTCACCTCATTAGAGCAAAAGATGCTCTTAGT-TTCTTAGCACTTA--GGAATTCACA-G GGTTTCAGGAACC-CCATGTCAGGGACTAGGGATGAAAA-------TACATTTCTTGTTAAAAATCACAATATCACAGTC -------------ACTT---AATA--TTAG--TTTTTCCAGGACCGTTTGTAT--------TTTTTTGCTGATATTTTTG TTTTTTACTATAATTTGGGGAGAAGAT >Tursiops_truncatus CCTTCG-AAAGCCCTGTGCTCCCCGTTCGTGCTCAGCAAATATT------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------AAACGGCTCAAATGTTGATA---ACTG---TAT-TGGAAAAACCTGCATTCCTCCTCTTGTGT CTCTCTT--TTACTTTCACACAGAACACTTCACTTCCGACACTTCTTGTCACCAA----ATGTGT----------GGGAT TTTTCCCA-ATGCCAAGCAATTCCAT----GACACCAGCTGGGTGTCCCA--------------------------CAAT TTAACTCCTTTCTGACTCTGTCTACCTGGAGATAACATCAGATCCCACAGATCAAAGGCTCAGACCCTCAAGACTGTTCC CTCCCAGCCCACAACCATAACACTTCAGCTGCCAAATGCAAGTTGTAGGGCCCCAGGTCAC--CCACCACTTCTCTCTGG CTGGGCTACAAATCACAGATTCCCA-TGACCTCT---CTCTTATATTCAGTTATTTGCTAAAG-AGCTCACAGAACTCAG GGAAACACTTAACTTAACGTTTGCCAGTTTAT--TAGAGGATA----TGATAAAGGAAACAGATGCACAGCCAGAT-GAA GGGATACGTAGGGT--GAGGTCTGGGAGGGCCCAGAGCGCAGGAG---CTTCTGTCCCTGTCTAGTTGGAATGCATCGCC CTCCCCGTGTG-TGAATGTGTTCACCAACCTGAAAGCT-TTCAAACCCCATACTATTGGGATTTTAAGGAGCCTTCCTCA CATGGATAAGACCAATT-------------------TTTAACTCCATTTTCAGCCCCTCTCGTCTCTTCAGAGAGGTGGG GGA----GTGTTGCTGATAATTCCAAGCTTCTAATGATG---------------GGAACCAGATCCC-----------AT TCAGGAG-CC---ACCCAGAGTCACCTGATTAGAACAAAAGATGCTCCTACTGTTCTTAGCACTTA--GGAATTTATACG -GTTTCAGGAGGC-CTCTGTCAGGGACTGGGCATGAAAACCAAAGATATATTTCTTATTATAAATCACAGTGTCACAGTA -------------ACTT--------------------------------------------------------------- --------------------------- >Equus_caballus CCTTAGTAAAGTCCATTGCTCACGGTCCATGCCCAGTAAA---------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------TAGCTCAAGTGTTGATA---ACTC---TAT-TGGAAAAACCTACAGATCTCCTCCTGTGT CTTTCTTCTTTACTTTCACACAGAA-----CACTCCTGACACTTCTGGTCATCAA----ATGTGT----------GGGGG TTTTTTTA-ACACCAAGCAATTCTGC----ACCACCAGCTGGGTGTCCTA--------------------------CAAT TTAATTCAATTCTGA--CTGTCTACCTGGAGACAGCGTCAGATCCCACAGGTTAAGGGCTCAGTCCCACAAGA-TGCCCC C-------------------CACTTCAGATGCCAGTTGCAAGTAGTAGGTCCTCAGGTTAC--CCATAACTTCTGTCTGA CTTGGCTAC---TCGGAGGTTCCCA-TGATCTCCTCCTTCTTGGATTCAGTTATTTGCTAGAACAGCTCACAGAACTCAG GGAAACAC--------ACGTTTGCCAGTTTAT--TAAAGGATA----TGATAAAGGACACAGATGAACAGCCAGAT-GAA GAGATACATGGGGC--GAGGTCTGGGAGGGTCCAAAGTGCAGGAG---CTTCTGTCCTTGTGGATTTGGGGTCTGTCACC CTCCTGGTG---TGGATGTGTTCACCCACAGGAAGGCT-TTTGAACACCATACTATTGGGATTTTCTGGAGGCTTCCTCA CGTAGGCATGATCGATT-------------------GTTAACTCCTTTTCCAGTCGCTTTC--CCCTCTAGAGAAGCGAG GG-----GCAGGGCTGAAAATTCTAAGTGTAAAGTGAGGCTCTTGGGCTTTCTGGGGACCAGCCCCC-----------AT CCAGGAGCTC---ACCCAGATTCACCTCATTAGAACAAAAGATGCTCCTAAGGCTCTTATCACTTA--GGAATTTACAAG AGTTTTAGGAGCC-CTGTGTCAGGAACTGGGGATGAAGACCAAATATATGTTTCTTATTATAAATCACAATATCATAATA -------------ACTT---A--G--TTAC--TTTTTCCAGGACCATTTGTA---------TATTTTGCTGATATTTTTG TTTTTA-CTATACTGTGGGGAGAAGAT >Ceratotherium_simum CCTTAGTAAAGTCCGTTGCTCACCGTACATGCTCAGTAAATATT------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------AAATGGCTCAAGTGTTGATA---ATTG---TAT-TGAAAAAACCTACAGATCTCCTCCTCTGT CTTTCTCTTTTACTTTCACACACAACACTTCACTTCTCACACTTCTGGTCACCAA----ATATGT----------GAGGA GGGCTTCA-ACGCTAAGCAATTCTGC----AACATTAGCAGGGTATCCTA--------------------------CAGT TTAACTCAATTCTGAGTCTATCTGCCTGGAGATAGCGTCAGATCCCGCAGGTTAAGGGCTCAGTCCCACAAGACTGCCGC C-------------------CACCTCAGATGTCGATTGCAAGTTGTAGATCCCCTGGTTAC--CCACAACTTCTGTCT-- -TTGGCTACAAATCGAAGGTTCCCA-TGACTTCCTCCCCCTTGGGTTCGATTATTTGCTAGAACAGCTCACAGAACTCAG GGAAATACT------TACATTTGCCAGTTTAT--TAAAGGATA----TGATGAAGGATACAGATGAACAGCCAGAT-AAA GAGATACATAGGGC--AAGGTCTTGGATGGCCTGGAGCGCAGGGG---CTTCTGTCCTCATGGATTTGGGGTGCGTCACC CTCTTGGTA---TGGATGTGTTCACCCACCTGAAAGCT-TTTGAACCCCATACTATTGGGATTTTATGGAGGCTTCCTCA CATAGGCATGATCAATT-------------------ATTAACTCCTTCTCCAGCTCCTCACCGCTCTCTAGAGAAGTGGG GA-----GTGGGGCTGAAAATTCTAAGCCTCCAATTATG-GCTTGGGCTTTGTGGGCACCAGCCCCC-----------AT CCAGGAG------------------CTCATTAGAATAAAAGATGCTCCTAAGGCTCTTATCACTTA--GGAATTTACAAG GGTTTTAGGAGCC-CTGTGTCAGGAACTGGGGACAAAGACCAAATATATAT---TTATTATAAATCACAATATCGTAATA -------------ACTT---A--G--TTAC--TTTTGCCAGGACCATTTATAT--------TTTTTTGCTGATATTTTTG TTTTTA-CTATACTATAGGGCAAAGAT >Myotis_myotis CCCTACTAAAGTCCTTTGCTCACCATACGTACTCAGTAAATATG------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------AAATGGCTCAAGTATTGATA---ACTG---CAT-TGAAAAGATCTACAG---TTCTCTTGTGT CTTTCTCCTTTACTTTCACACAGAACACTTCATTTCTGAC---TCTAGTCACCAA----ATGTGTGTGTGTGGCAGGGG- --------------AAACAATTCTGC----AGCACCAGCTGGGTGTCCTA--------------------------CAAT TTAACTCAATTCTGACTCT----ACCCAGAGATAGCATCAGATCTCTCTGGTTAAGGGTTCAGTCCCATGAAACTGCCTC CC------------------CATTTCAAATGCCAATCAAAAGTAGTAGGTCCCCAGGGTAT--TCACAACTTTTGTCCTA CTTGGTTACAAGTCAGAGCTTCCCA-TGACATCTCCCCCCTTGAATTTGATTGTTTGCTAGAACAGCTCACAGGACTGAG GGAAACGTT------AACATTTGCCAGTTTAT--TAAAGGATA----GGCTAAAGAATGCAGATGAAGAGCCGGGT-GAA GAGACACACAGGGTGAGAGGTCTAGGAAGATCTCAAGTGCCTG-----CTTCTGCCCCTGTGGAATTGGGATAGGT---- ---------------------------------------TTGGAACTCTGCACTGTTGAGATTTTATGGGAGCTTCCTCA TGCAAGCATGATCAATT--------------------ATACATTCATTTCCAGCTTC-----CCTGTCTAGCGAAGTGAG GG-----GCAGGGGTGAAAATTATAA---CCTAAATA----------------------CAGCCCCATCCCAGGAAACAT TTAGGAGCTC---ACCCAGATTTGAGTCATTCTAGCAAAAGGTGCTCCTTGTGTTCTTATCACGTA--GGAATTTACAAG AGTTTCAGGAGCCCTTTCGTCAGGGACTGGGGACGAAAACCAAATACATATTTCTTACTATAAATCGTAAGTTCAGAATA -------------ACCT---GCTG--TTAC--TTTTTCCAGAACCATTTGTAT--------TTCCTTGCTGATATTTTTG TTTTTA-CTGTGCTATGGGGAGAAGAT >Rousettus_aegyptiacus CCTTAGTAAAGTCCTTTGCTCACCATACATACTTAGTAAATATT------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------AAATGGCTCAGGTGTTGATA---ATTG---TGT-TG-AAAAACCTACAG---TTCATCTATGT CTGTCTT-----CTTTCA-ACAAAACAATAGACTTCTTATACTT-TGGTCACCAA----ATATGT----------CAGAG CTTTTCTA-ACACTAAGCAGTTCTGC----CATACCCACTGGATGTCTTG--------------------------CAAT TTAACTCAGTTCTGACTCTGT----CTGGAGATAGCGTCTCATCTCACAGGTTAGGGGCTCAGTCCCACAAGACTGCACT CCCGGCCCCACCTACCCA--CACTTCAAATGTCAGTCGAAAGTAATAAGTCCCCAGGTTAC-----TCAATTTTGTCTGA CTTCGCTATAAATCAAAGCTTTCCATTGACATCTTCCCCCTTGAATTCAATTGTTTGTTAAAACAGCTCAT-GAGCTCAG GGAAACACATAACT-------TGCCAGTTTTT---AAAGGATGTGATTGATAAAGGGTGCAGATAAACAGCCAGAT-GAA GAGGTACATACACC--TATGTCTGGTTAGGTCCCAAGTGAAGGAG---CGTCTGTCCTCATGGAGTTA-----------C TTCTCAGTACGTTGGTTGTGCTCACCAACCTGAAAGTT-TTCAAACCCTGTCCTATTGAGGTTTTGTGGAGGCTTCCTC- -----------------------------------------TTGCTTTACCAGCCTT-----GCTCTCTAGAGAATTGGG AA-----GAAGGGTCGAAAATTCAAAGCTGCTAATTTTG-GCTTCAGCTTTCTGGGGACCAGCCCCCATCCAGGAACCAT TCAAGAACTC---ACCTAGAGTTGCCTCATTAAAACAAAAGATGCTCCTAGTGCTCTTATCACTTA--GGTATTTACAAG GGTTTAAGGAGCCTTTTTGTCAGGGGCTGGAGACGGAGACCAAATATGTAT---TTCTTATAAATCAC--------AGTA -------------ACTT---AATA--TGAC--TTTTTCCAGGACCATCTGTAG--------TTCTTTGCTGATGTTTTTG TTTTTA-CTATACTGAGGAGAGACGAT >Condylura_cristata CCTCAGTAAAGTCCTTCATTCACCATATGTACTCAGTAAATGTT------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------AAATGGCTCAAGTGGTGATA---ACTT------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------AATA--GTA---CTTTTATATGAACACATGTGT--------ATCTTTGCTGATATTTTTG TTTTTA-CTATGCTGTGTGGAAAAGAT >Uropsilus_gracilis CCTCAGTAAAGTA---CATACACTGTATGTACTCAGTAAATATT------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------AAGTGGCTCAAGTGATGATA---ACTT------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------AGTA--TCA---CTTTTATAGAATGACATGAAT--------GTCTTTGCTGATATTTTTA TTTTTTACTATACTGTGTAGAGAAGAT >Homo_sapiens CATTAGTAAAGTCTTTTGCTCACCATAAATGCTCAATAAATTTTATTTTATTTTATTTTTATTATTTATATTATTTGTTT TTATTTTATATTACTTTATTTATTTTTGGGTCTCACTCTGTCACCCAGGCTGGAGTGCCGTGGCATGATCATAGCTTATT GCAGCCTCAAACTCCTGGCCTCAAGAGATCCTCCTGTTTCAGTCTGTCAAGTAGCCTGGTCTCCCTATATTGAGTAGGCT GTTCTTGAACTCATGGGCTAGGCGATGCACCCACCTCTGCCTTCCAAAGTGCTGGGATTACAGGCATGAACCACCACACC CAGCCTCAGTAAAATTAAAATGGCTGAAGTGTTGATG---ACTT------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------AATGTGTTAC--CTTTTCTAGGGCTATTTGTCTTTTTTTTTTTTTTTGCTGATATTTTTG T-----------------GGAGAAAGT Bat37_LINE >L1MA9_3END -------------------------------------------------------------------------------- ----------------------------GTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATT TCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAAT AAAGCTGGAAAAA------------------------------------------------------------------- ------------ >Equus_caballus TGGC----TGTTAGAATAC----AGTATGAAGCGGAGGGGGAAAACAA-----------------------GGTCAGGG- --ATATTT---AAAGAGTTTTTTAT---------------GATGATGGATA--TTAACTAGACCGATTGTGGTGATCACT TCACAATAGATACAAATATTCAATCATTATGTTGTACACCTGAAACTAAT-----CGTTACGTGCCAATTATATCTCAGA AAAAAAAGAAATG---AAAAAAGTTTTT---TGT------AGAACATCAAGGACAAGGGGATGCACGGCTGCACTAGAAG CTGAAGCATCTG >Ceratotherium_simum TTGC----TGTTAGTATAC----AGTATGAAGTGGAAGTGGAAAATGA----------------------GGGGCAGGGA GGATATTT---AAAGAG-TTTTTAT---------------GGTGATAGATG--TTAACTAGACTGATTGTGGTGATCATT TCACAATACATACAAATATTGAATCATTATGTTGTACACCTGAAGCTAATAA---TGTTACATGCCAATTATATCTC--A AAAAAAAGAAAGA---AAAAACGTTTTT---TGT------AGAACTCCAAGGACGAGGTGATGCACGTCTGGACTAGGA- ---CGGCGTCTG >Myotis_myotis TGGC----TCTTAGTTTAC----AGTATGGTTTGGAAGGGGAAAATGA----------------------AGGGCAGAGA GGATATTT---AGAGTG--TTTTAT---------------GGTGATGGATG--TTGATTAGACATACTGTGGTGATCATT CTGCAATATACACAAATACCAAGTC---ACGTTATACACCTGAAACTAATGTAA-TGTTATAAGTCAATTACATCTC--- ---AAAAAA-------GAAAAACTGTTT---TGC------AGAACTTCAGGGACAAGGCGATGCACAGCTGGACTAGGG- ---AGGTGTGAG >Rousettus_aegyptiacus TGGC----TGTTAGTACAC----AGTACGGACGAGAAGGGTAAACTGA----------------------GGCACAGGGA GGCTATTT---AGAGTG--TTTTAT---------------GGTGATGGATGT-TTAAATAGACTTGTCATGGTGATCGCT TCGAAATATACACAAATATCAAATCACTATGCTGCATACCCAAAGCTAA------TATAATACGTCGATTATATTTCA-- ----------------AGAGAAGTTTTT---TGC------AGAACTTCTGGGACAAGGTGATGCACAGGTGGACCAGGA- ---TGGTGTGAC >Canis_familiaris TGGCCACATGCTA--ATAC----AGCAGGAACTCGAGTGGGAAATGCA-----------------------GGGGAGGGA GGATATTT------------------------------------------------------------------------ -------------------------------------------------------------------------------- ----------------AGAGAT----TT---TCC------AGACCAGCAAGGACAAAGTGATGCCCAGCTGGATTAGGA- ---TGCTGTCAC >Felis_catus TGGTCACATCTTA--ATAC----AGCATGCACTCGAGGGGGAAACGCA-----------------------GGGCGGGAA GGATATTT------------------------------------------------------------------------ -------------------------------------------------------------------------------- ----------------ACAGAG-GTTTT---TGC------AGAGCGTCAAGGACGAGGTGATGCCCAGCTGGATCAGGA- ---GGGCGTCAG >Manis_pentadactyla TGGC----TGTTGGTATAT----GGTATGAACTAGAATGGAAAAATGA----------------------GGGGCAGGGT GGATATTT------------------------------------------------------------------------ -------------------------------------------------------------------------------- ----------------AAAGAG-----------------------TTCAAGGACAAGGTGATGCACAGCTGCACTGGGA- ---TGGTGTCAG >Sus_scrofa TGGC----TGTCAGTATAT----AGTAAGACCCAGAAGAAGAAAGGAG-----------------------GGGCAGGGA GGAGGTTC------------------------------------------------------------------------ -------------------------------------------------------------------------------- ----------------AAAGAGTTTTTC---TGC------AGGACTTTCCTGG-------------AGCTGGACCCGGA- ---TAGGGTCAG >Bos_taurus TGGC----TGTTAGTATACCGTTAGTACAATGTAGATGAAGAAGTGAG-----------------------GGGTAGGAA GTATATTT------------------------------------------------------------------------ -------------------------------------------------------------------------------- ----------------AAAAAGTGTTTC---TGC------AGAACTTCAGGGTCAAAGTGATAGACAGCTGGACTAGGA- ---TGGTGTCAG >Condylura_cristata TGGC-------------AC----AGGAAGTCAGAGATGGGGAAACCAGTGCAGGTTTGGGCACCATCCTGCTGGAGGGGC GGAGACTA------------------------------------------------------------------------ -------------------------------------------------------------------------------- ----------------GATGAT-TTGTC---TAC------AAAG-----AGGAGAGAG--------AACTGGGCTAGGG- ---CAGTGTCGG >Erinaceus_europaeus TGGC----AGTTAGTATAC----AGGATGAACTAGAAGGTGAAAAAAA---------------------ATGGGCTGAGT GGGTATTT------------------------------------------------------------------------ -------------------------------------------------------------------------------- ----------------AAAGAGTTTTTT---TTCCCCCCCAGAAGTTCAAGGACAGCATGACATACAGTAGGACTGGGA- ---TGGCATCAA >Homo_sapiens AGGC----TGTTAGGATAC----ATTAGGAACTGGAAGGAGAAAGGAG-----------------------GGTTAGGCA GGACATTT------------------------------------------------------------------------ -------------------------------------------------------------------------------- ----------------CAAGAGTGTTTT---TGC------AGAATTTCAAGGACAGAGTGATGCACAGCTGGACCAGGA- ---TGGTGTCAA Bat37_LTR >ERV54-EC_LTR -------------------------------------------------------------------TGTT-----AAAA ACAAGACAACAGGCCCAAAATGGAGTCACTTATGCTAAGCCCCACGTCACCAA-ACCGAGACTTAACTTAATTACAGTTT CGGCTCTCCCAGAAATGGAATCTTAAACCAGTCAATCAGGAATCACCTGATCAGCACTAGTTAGGTAATCTGCCTGATAG ACC------------CCTGCCATCC----CCTAAAGGAAAGTAACCTTGCAATAACCAATCCACTTTTTTGCCTAGTATA ACTTCCTTGTTCCTGCTCCCTTCTGCCTATAAAAGTCTTTCATTTTGTACAGCTCCTCGGAGCTCCTTTCTATCTGCTAG ATTGGATGCTGCCCAATTCATGAATCATTGAATAAAGCCAATAAGATCTTTAAAATTTACTCAGTTGAATTTTGT-TTTT T--AACA------------------------------------------------------------------------- ----------- >Canis_familiaris TATAGCTTTACAGATAGTTGTAGTACGATAAGCAGTGTTCAGTGTAATAATGGTGCG---GTGG---TGCT-----GAAA ACAAAACAACAGGCCCAAATGGTAGTCCCTTGTGCTAAACCCCACGTCACCAA-GTCAAGACTTAACTTAATTACCGTGT GGGCTTTCCCAGAAATGAAGCCATAGG-TGGTCAATCAGGAATCCCAAAATAAGCATCAGTTAGGTAACCTGCCTGACAG ACG------------CTTACCATGC----CCTAAAGGAAAGTGGCCTGGTGTTAACCCGTCCCCGTGCGTGTCTAGGAAA ACCCCCTTGTTCC-ATCCCCTTCTCCCTATAAAAGTCTTTCATT----------CCCCAGAGCTCCTTCCTATCAGCT-G GTTGGAGGCCGCCTGATGCATGAATGTTTGAGTAAAGCCAATAGGATCTTCAAAATGTACTGGGTTGAATTTTGT-TGTT ---AACA---GGTG---TTT-GTTGG----------------------TTGTCTTTAT-CCCTCTAAGGAAGAGACATAC TTTGTTCCACA >Felis_catus AATAGCTTTACAGAGAGTTGTAGAAAAGTAAGCAGTACTCAGA-------------A---GTAA---TGCT-----AAAA A--------CAGGCCTAAATTGGAGTCAATTATGTTAAGCCCCATGTCGCCAA-ATCAAG---------ACTTACAGTTT CAGCTCTTCCAGAAATGGAATTATAAGGCAGTTAATCAGGAATCGTGCAATAAGCATTACTTAGGTAATCTGCCTG---- ACC------------CCTGCCATGT----CCTAAAGG-AAGTAACCTTGCAATAACCAACCCATGTTTTGGGCTAGTGTA ACTTTCTTGTTCC-AGGCCCTTCTGCCTATAAAAGTCTTTCATTTTGTGTAATCACTTGGAGCTCGTTTCTGTCTGCTGG TGTGGATGCTGCCTGATGCATGAGTAATCGAAGAAAGCCAATATGATCCTCAAAATGTACTCAATTGA-TTTTGT-TTTT T--AACA---GTTG---TTT-ATTTATTGTCTTA--------------TTGTCTTTAC-CCCTCTAAAGAAGAAATATAT TTTATCTCACA >Manis_javanica TACAG------AGATTTTTGCAGGGCAATAAGCAGCATGCAG-GAGGGAAAGGTGTA---CTAG---TGTT-----AAAA ACACAGCAACAGGCCCAAGATGGAGTCATTTATGCTAAG-CCCATGTCACCAA-ACAGAA-------TTAGTT------T CAGCTGTCCCAGAAATGGAATCTTCAACTCATCAATCAGGAATTGCCTGATCAGCTCTGGTTAGATAACCTGCCTGATAA ACCTCCATACCTCCACCCACCAGTC----CCTAAAGGAAAGTCACTTTGCAAGAGCCAACTTACTTC-TCGTTTAGTGAA ---TCCTTGCTCCTACTTCTTTCTGCCT-TAAATGTCTTTCATTGTGTACAGCTCCTCGGAGCGCCTTTCTGTCTGCTAG ATTGGATGCCACCTGATTTATGAATCACTGGATAAAGCCAATAAGATCTTCAAAATTTACTCAGTTGAATTTTTCGTTTT ---AACT---ATTG---TTT-ATTTA----------------------TGGTCCTTAT-CCCTCTAAAGACAAAATATAA TTTACTCCATA >Sus_scrofa AATAACATTACAGAGGGATGCAGTGCAATAAGCAGTACTCAGCAGAA-AAAGGTGTA---GTAG---TGTT-----AAAA ATAATACAGCAGTCCCCAAGTGGAATCTTTTATGCTAAGCCTCCTACCACCAA-ACCAAG-----ATTCAATCACAGTAT TGGCTCCCCCAGAAATGAATGCTTACACTAATTACTCAGGGGTTCTGTGATCTGTCCTAGGGAGGTAATGTACCTAACAG ACT------------CCTGTCACCC----CCTAAAGGAAAGTAGGCTTGCAATAACTAACCCACTTT-TTGTCTAGAATA ACTTCCCTGTC---ACTCCTTTCTGCCTGTAA--GTCTTTCACCTTGTAC----------AGCTCCTGTCTCTCTGCTAG GTTGTATGCTGCCCAATTCATGGATCATTGATTAAAGCTAATAAGATCTTCAAAATTTACTCAGTTGAATTTTGT-TTTT T--AATA---GAGG---TGG-TTTTTTC--------------------TTACCTTTATCCCCATTTACAAAGAAATGTAT TTTATTTGATA >Bos_taurus AATAATTTTACAGAGAGATTCAGTCCAATAAGCAGTGCTCAGCAGGA-AAAGGGGTA---GCAG---TGTTAGAAAAAAA ACAATACAATTGTTCCC-AATGAAGTCACTTATGCTAAGCTCCACATCACTAAGACTGAGATTTAACTTAATTATGGTTT TGGTTCCCCCAGAAATGAAATCTTACATCAATCAATCAGGAATTTTATGATCAGCTCTAGAGAGGTCATTTGCCTGATAG ACT------------CCTGCCACCT----TTTAAGAGAAAGTAACCTCACAATGACCAACCTACTTT-TTGCCTAGAATA ACCTCCTTGATCTCATTCCT--------------GTCTTTCATTTTGTATAGCTCCTCAAATC----TTCTGTCTATTGG GTTACATGCTGCCCTATTCATGTATCATGGGACAAAGC---TAAGATCATTAAAATTGACTCAATTGAATTTTGT-TTTT A--AATA---TATT---TTT-G--------------------------TTGCCTTTAA-CTTGTTTAAGAAGAAATATAT TTCACTTGATA >Equus_caballus AATAACTTTGCAGAGAGATCCAGCACAAT-AGCAGTACCCAGCAGAC-AAAGGGGTA---TTAC---TATT-----AAAA ACAAGACAGCAGGCCCGCAGAGGAGTCGCTTATGCTAAGTGCCACATCACCAA-ACCAAG-----ATTTAGTTACACTGT TGCCTCTCCCGGAAATGGAATGTTAAACCAGTCAATCAAGAATCCCCTGATCAGCGCTAATCAGGTCATCTGCCTGATAG ACC------------CCTGCCAGCC----CCTAAAGGAAAGTAACCTTGCAATAACCAACACACTTTTTTGTCTAGAGTA ACGTCCTTGTTCCCGCTACCTCCTGCCTATAAAAGTCTTTCATCTTGTACAGCCCCTCGGAGCTCTTTTCTATCTGCTAG AGTGGATGCTGTCCGATTCATGAATCGTGGAATAAAGGCAATAAGATCTTCAAAATTTACTCAGTTGAATTTTGT-TTTT TT-AACA---GTTT---ATTTA--------------------------TTGCCTTTAT-CCTGCTAAAGGGGAAATACAA TTTATTGCATA >Ceratotherium_simum AATAACTTTACAGAGAGTTGCAGTACAATAAGCATCACTCAAGAGAA-AAAGATGTA---GTAC---CATT-----AAAA ACAGGACAACAGGCCCAAAATGGAGTCGCATATGCTAAGCCCCACATCGCCAA-ACCGAG-----ATTTAATTAGAATGT TGCCTCTCCCAGAAATGGAATCTTAAACCAGTCAATCAGAAATCACCTGATCAGCACTAGTTAGGTCATCCACCTGACGG ACC------------CCTG-CATCC----CCTAAAGGAAAGT-ACCCTGCAATAACCAACCTGCTTTTTTGTCTAGTGTA ACTTCCTTTTTCCTACTCCCTCCTGCCTATAAAAGCCTTTCATTTTGTACAGCTCCTCAGAGCTCTTTTCTATCTGCTAG AGTGGATGCTGCCTGATTTATGAATTGTTGAAT-AAGCCAATAAGATCTTCAAAATTTACTCAGTTGAATTTTGT-TTTT TT-AACA---GTTG---TTT-ATTTA----------------------TTGCCTTTAT-CTCGCTAAGGAAGAAATATGT TTTATTCCATA >Myotis_myotis AATAACCTTAAAAAGATTTGCTATACAATAAGCAATACTCAACAGAA-AAGGGTATA---GTGG---TGTT-----AACA ATAAGACACCAGACCCAAAATGGATTTGCTTATGCTAAGCCCCACATTACCAA-ACCAAGACCTAATTTAATTATGGTTT TGGCTCTCCCAGAAATGGAATCTTAAACCAGTCCATCAGGAATCAGCTGATCAGCACTAGTTAGGTCCTCTACCTGACAG ATT------------CCAGCCATCCCCTGCCTACAGGAAAGTGACCTTGCAATAAACAACCTGCTTTTTTGTCTAGTATA AATTCCTTGTTCCCATTCGCTTCTGCATATAAAAGTCTTTCATTTT-TACTGCTCCTCAGAGCTCCTTTCTATCTATTAG GTTGGATGTTGCCTGATTCATGAATCATTGAATAAAGCCTATAAGATCTTCAAAATTTACTCAGTTGAATTTTGT-TGCT TTTAAAA---ATAA---GTGTCTTTA----------------------TTGTCCTTTT-CCCATGAAAAAATAAATATAT TTTATTCTATA >Rousettus_aegyptiacus GGTAACTTTACAGATAATTGTAGTGTGATAAACAGTACTCAACAGAA-AAGGGTGTT---GTGG---TATT-----AAAA ACAAGATAACAAGCCTCAAATAGAATCGCTTATGCGAAGTCCCACGTCATCAA-CCCAAG-----ACTAAATT------- -------------AATGGAATCTTACACCAGTCAAACAGGAATCGCCTCATCAACAATGATTAGACAATCTGCC-GATAG ACC------------CCTGCCATCC----CCTAAAAGAAAGTGACCTTGTAGTAACCACACTGCTTCTTTGTCTAGTATA ACTTCCTTGTTCCCATTCCCTTCTGCCGATCAA-TTCTTTCGTTTGGTACAGCTCCTCACAGCTCCTTCTTATCTGCTCA GCTGGAAGCTGCCTGACTCATGAATCATTGAATAAAGTCAATA-GATCTTCAAAATTTACTCAGCTGAATTTTGT-TTTT T--AACA---GGCT---TTTTTTTTTTTTTTTTA--------------TTGCCTTTAT-CCTGCTAAAGAAGAAATATAT TTTATTCCATA >Condylura_cristata AATCACCTTACACAGTTATTTAGTTCAATAAGCAGTACTCAGCAGAA-AAAGATACA----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------GTAG---TTT-ATTTATTGCCTTTTCTCCTAATAATATTTAATGTTAT-TCTGTTAAAGAAGAAATAGAT TTTGTCCCGCA >Uropsilus_gracilis AATCACTTTACAGAGTTA--CAGTTCAATAAGCAGTACT-AGAAGAAAAAGAATACA----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------GTAT---TTT-ATTTATTCC---TTCTTCCAATAATATTTACTGTTAT-CCTGTTAAAGAAGAAATGGAT TTTATTCCATA >Homo_sapiens AATGACTTCATGGATAGTTGCAGTACAATACATAGTACTCATCAGAA-ATGGGTGTG----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------GCCA---TTT-ACTTTTTAC--TTTCTTCTAATAATGTCAAATGCTAT-CTTGTCAAAGAAGAAATATAT TTTATTCCATA Bat40_LTR >ERV54-EC_LTR -----------------------------------------------------------------TGTTAAAAACAAGAC AACAGGCCCAAAATGGAGTCACTTATGCT-AAGCCCCACGTCACCAAACCGAGACTTAACTTAATTACAGTTTCGGCTCT CCCAGAAATGGAA---TCTTAAACCAGTCAATCAGGAATCACCTGATCAGCACTAGTTAGGTAATCTGCCTGATAGACCC CTGCCATCCCCTAAAGGAAAG----TAACCTTGCAATAACCAATCC----ACTTTTTTGCCTAGTATAACTTCCTTGTTC CTGCTCCCTTCTGCCTATAAAAGTCTTTCATTTTGTACAGCTCCTCGGAGCTCCTTTCTATCTGCTAGATTGGATGCTGC CCAATTC--ATGAATCATTGAATAAAGCCAATAAGATCTTTAAAA-TTTACTCAGTTGAATTTTGTTTTTTAACA----- ------------------------------------------------------------- >Canis_familiaris TTGATAAAGA---TCAATAGTAAGGACATGGTATCCAACACTGT--AGCCATGT---G-CTC---TGCTGAAAACAAGAC AAGAGGCCC--ACTGCAATC-CTTATATGAAAACCCCACGTCCCCGAAGCGAA-----ACTCATTTATGGTTTTGGCTCT TACAGAAATGGAA---TCTTAGACCAGTCAATCATGAACTGCCTGAT-GGGACTAGTTAGGTAACCTGCCTGATAGGCCC CTGCCATCCCCTAAAGGAAAGAAAGTAACTTCACAGTAACTCACCTG---ACTTTTTTCCCTGCTGTAACTTCTTTG--- --GTTCCCTTCTGCCTGTAAG----TCTCGTTTTGTACAACTCCTCGGAGCTTCTTTCTATCTGCTAGATTGGCTGCTGC CTGATTCAAATCAATTTTTGCTCA-----AATAAA--CTTAGAAATTTTAATATGCCT--GTTTATTTCATAGCA---GT TC---TTAGCACTTGAAATATTTACAGTCTAAATTGAGGTG-----TAAGTCTAAATACAC >Ailuropoda_melanoleuca TGGGTAAAGA---TCAATACTAAGGATATGCTGTCCAACACTGT--AGCCATGT---G-CTC---TGCTGAGAACAAGAC AACAGGCCCAAATGGAAATCGCTTATATGAAAGACCCACGTCACCAAACCGAA-----ACTCAATTATGGTTTTGACTCT TACAGAAATGGAA---TCTTACAGCAGTCATTCACG----GCCCGATCAGCACTAGTCT----ATCTGCCTGATAGACCC CTGCCATCCCCTAAAGGAAAGAAAGTAACCTTGCAGGAAACAGCCTC---GTTTTTTTCCCTCCTGTAACTTCCT----- -------------------------------------CAGTTGCT-GGAGCTTCT----ATCTGCTAGGTTGGCTGCTGC CTGATTCAAATCACTTTGTACTCA-----AATAAA--CTTAAAAATCTGAATGTGCCTCAGTTTATCTCATAGCA---AT TC---TTAGCACTTAAAATATTTACAGTCTAAGTTGAGATG-----TAAGTCCAAATACAC >Manis_pentadactyla TTTATAAAGGTCATCAATTCTAAGGCTGTGCTATCCAGTACTGT--AGCCATGT---G-CTC---TCTTAAAAGCAAGAC AAAAGGCCTAAAATGGAGTTGCCTATTTG-AAGTGCCATGTCATCAAGCCAAGATTTAACTGAGCT-CAGTTTCGGCTCT CCCAGAAATGGAC---TCGTACACCAGTCAGTCAGGAACCACCTGATCAACACTA---AGGGAATCTGCCCAATAGACCC CTGCTATTCCCTAAAGGAAAGGAAATAACCTTGCAATAACCAGCCTG---A--TTTTTGCCTAGTATAACTTCCTTATTC CCACTCCCTTTTGCTTATAAAAGTCTTTCCTTTTGTACAGCTCCTTGAAGTTTCT----ATCTGCTATATTGGATGTTAC TTGATTCAAATCAATTT--------------TAAACTCTTAAAGTTTTAAGTATGCTTCAGTTTATCTTGTAACA---AT TC---TTAGCATTTGAAATATGACCAGTCTAAATTGAGATAAGCTATAAGTCCAAATACAC >Sus_scrofa TTGATAA------TCAATTATAAGGATATG-TGTCCTAT-------AGCAGTAT---G-CTG---TGTTAAGAACAAGAC AGCAGGCCCAAAATGGAGTCACTTATGCT-AAGCCCCACATTACCAAACCCAG-----ACAAACTTAAAGTTTTGACTTG CCCAGAAGTGTAA---ACTTAAACCAATCAGTCAAGAATCACCACATCAGCACTAGTTCAATAATCTGCCTGACAGAGCC TTTCCAGTTCCTAGAGGGAAG----TAACCTTGAAATAACCAAACTGTTTTTTTTTTTTTCTAGTATAACTTCCTTGTTT CTGCTCCCTTCTGTCTTTAAAAGTCTTTAGTTTTGCATAACTTCTCTGAGGTCCT----TTGTGCTGTACTTGAAGCTGC CTGATTCAAATTGTTTTTTGCTCA-----AATAAATTCTTAAAAAATTTAACATGTCTTAGTTTATCTTTTA------AT TC---TTAGCACTTGGAATAGGA-----CTAAATTGAGATGTTT--TAAGTCTAAATACAC >Tursiops_truncatus TTGGTAAAGATCATAAATTCTGAGCATGTGCTATCCAATATGAT--AGCCATAT---G-CTC---TGTTAAAATTGAGAC AACAGGCCCAAAATGGAGTCACTTATGCT-AAGCCCCATATAACCAAACCCAGACA--ACGTAATTACAATTTCAGCTTT CCCAGAAATGGAA---TCTTAAACCAGTCAATCAGGAATAGCCTGATCAGCACTAATTAGGTAATCTGCCTCATAGACAC CTGCCATCCCCTAAAGGAAAG----TAACCTTGCAATAACTGACCTG---CTTTTTTTTCCTAGTGTAGCTTCCCTATTT TTGCTCCCTTCTGTCTATAAAAGTTTTTCATTTTGTATAGCTCCTCTGAGCTCCT----TTCTGCTGTACTAGCTGCTGC CCAATTTGGATTGATTTTTGCTCA-----AATAAA--------ATTTTTAATATGCCTCAGTTTATCTTTTA------AT TC---TTAGCATTTGAAACATGA-----CAAAATTGAGATGTATCATAAGTCCAAATACAC >Equus_caballus TTGGTAAATATCACCAATTCTAAAGATGTGCTGTCTAATACTGT--AGTCATGT---G-CTC---TGTTAAAAATAAGAT GACAGGCCCCAAACGGAGCTGTTTATGTT-AAGCCCCACATCACCAAACCAAGACTTAACTTAATTACAGTTTCCACTCT CCCAGAAATAGAA---TCTTAAACCAGTCAAGCAGGAATCACCTGATCAGCACTCGTTAGGTAATTTGTCTGATAGACTC CTGCCATCCCTTAAAGGAAAG----TAACTGTGAAATAACCACCC-----GCTTTCTTGCTTAGCATAACTTCCTTGTTC CTGCTCCCTTCTGCCTATAAAAGTTTCTCATTTTGTACAGCTCCTCAGAGCTCC-----ATCTGCTAGATCGGATGCTAC CTGATTTGAATAGATTTTTGGTCA-----AATAAATTCTTAAAATATTTACTATGCCTCAGTTTACCTTTTAACA----- -C---TTAGCACTTGAAATATGA-----CTAAATTGAGATGTGCTGTAAGTCCAAATACAC >Ceratotherium_simum TTGGTAAATATCATCAATTCTAAGGATGTGCTGTCCAATACTGT--AGCCATGT---G-CTC---CGTTAAAAATAAGAC ---AGGCCCAAATTGGAGCTGCTTATGCT-AAGCCCCACATCACCACACCAAG-----ACTTGGTTACAGTTTCCACTCT CCCAGAAATAGAA---TCTTAAAC----CAATCAGGAATCACCTGATCAGCACTAGTTAGGTAATCTGCCTGATAGACTC CTGCCATCCCCTAAAGGAAAG----TGACCTTGCAATAACCGCCC-----ATTTTTTTGCCTAGTAGAACTTCCTTGTTC C-ACTCCCTTCTGCCTATAAAAGTCTTTCATTTTGTACAGCTCCTCAGAGCTCCTTTCTATCTGCTAGATTGGATGCTGC CCAATTTGAATAGATTTTTGCTCG-----AATAAACTCTTAAAATATTTACTATGCCTCAGTTTATTTTTTAACA---GT TC---TTAGCTCTTGAAATATGA-----CTAAATTGAGATGAGC--TAAGTCCAAATACAC >Myotis_myotis TTGATAAAGATCAT-ACCATTAAGGATATGCTGTCTAATACTGT--AGTTGTGT---G-CTT---TGTT-AAAAC-AGAC AACAGACCCCAAAAGGAGTCACTTATACT-AAGTCCCACATTACCAGACTGAG---------AATTACAGTTTCTGTCCT TCCAGAAATGGAA---TCTTATACCAGTCAACCGGGAATCAACTGATCAGCACTGGTTAAGTAGTCTGCCTGATAGACAC CTGCTACCCCT--AAAGAAAG----TAACCTTACAATAACCAACCC----AATTTTTTGCCTAGTGTAACTTTTTTGATC CCACGCTCTTCTGCCTATAAAAATCTTTCACTTTATACAGCTCCTCAGAGCTCCT----GTTGGCTAGATTGGATGTTGC CTAATTCAAATTTGTTTTTGCTTA-----AATAAACTCTTAAAGTTTTTAATATGCCTCAG-TTATCTTGTAACA---GT TC---TCAGCACTTGAAATATGGCCAGTCTAAATTGAGATGTGCTGTACATCCAAGTGCAC >Rousettus_aegyptiacus CTGATAAAGATCATCAATACCAAAGAAGTACTATCTAATACTGA--AGT-GTGT---G-CTC---TGTT-AAAACAAGAG AACGGGCTTCAAATGGAGTCGCTTATGCT-AAACTTTACATCAGCAAACTGAG-----ACTTAGTTACAGTTTCTGTTCT CCCAGCAATGGAATCTTCTTCCATCAGTCAATCAGGAATCAAATGATCAGCACTAGTTAAGTAATCCCCCTGATAGACCT TTGCCTTCCCTCAAAGGAAAG----AAACTTTGCAATAACCAATCTG---A-TTTTTGGCCTAATATAACTTCCTTGTTC CCACTATCTTCTGCCTATAAAAGTCTTTCACATTGTACAGCTCCTCAGGGGCCCT----ATCTACTAAACTGGATGCTGC TTGATTCAAGTGGATTTCTGCTAG-----AATAAACTTTTAAAAGTTGTAATATGCCTCAATTTACCTTGTAATA---GT TC---TTATCACTTTAAATATGACCAGTCTAAATTGAAATATGCTGTAAATCCAAATACAG >Condylura_cristata CTGATAAACATCATCATTTCTAATGATA-------CAAAACGGT--AGCCATAT---GGCTC------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----TTAGCACTTGAAATATGAGTG--CTAAATTGAGATGTTCTGAGTATCCAAAGGCAC >Sorex_araneus CTAATAAGAATAATCAGTTTTAAGGCTATGCTATCCCAAACTATGAAACTGCAG---G-ATT------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------CAGCACTTGAAATAGGAATCCTCTAAATTGAGCTGTACCAGAAGTCTAAATGCAG >Homo_sapiens CTCATAAAGATTGTTTGTTCTAAGAGTGTGCCATTCAATACTGT--AGCCATGT---GCCTC------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----TTAGCACTTTACATATGA-----CTAAATTGAGATGGGCTGTAAATCCAAATACAC Bat48_LINE >L1MA9_3END -------------------------------------------------------------------------------- --TTTTTCCAGCTTTATTGAGGTAT----AATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTG ATATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTAC---CATTTT TTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAA---ATTTCAAGTATACAATACAGTATTATTAACTATAG TCACCATGCTGTACATTAGATCTCCAGAACTTATTCATCCTGCATAACTGAAACTTTGTACCCTTTGACCAACATCTCCC CATTTCCC------------------------------------------------------------------------ ------------ >Equus_caballus AGATGATATATTGCC-AAAGTTTTTAACTTTAGTTGCAACATTGTATGAT----T---ATAACATTC----TTTTT--T- --------------TATTGAGATATTGAGAATTGACATAT-AACCTTATATTAGTTTCAGGGGTACTACGTAATAATTTG ATATTTGTATACACTATGCAATGATCACCACAATAAGTCTAGTTACC--ATCTATCACTGTACATAGTTACAAAAGCTTT TTTTCTTGTATTGAGACCTTTTAAGATTTACTCTCATAGCAC---CTTTCAAATATGCCATACAGTATTAATAACTATAG TCATCATGCTGTACTTTACATCCTCATGACCTATTTATTTT--ATGACTGGGAGTTCGTACCTTTTGACCACCTTAACCC -----------ATGACATTC--TTTTTT---ATGGAGGATGA-----------TTTTTGTAATTGAAATGGGTTTTATAT GTAAAATCTAGA >Ceratotherium_simum AAATGGTATATTGCC-AAAGTTT-----TTTAGTTGCAACTTTGTATAAT----T---ATAACATTC----TTTTT--T- -------------GAATTGAGATAT----AATTGACATAT-AACTTTATATTAGTTTCAGGTATACTGCATAATAATTTG ATATTTGTATACGCTAGGAAGTGATCACCACAATAAGTCTAGTTACC--ATCTGTCACCATATGTAGTTACAAAAACTTT TTTTCTTGTAATGAGACCTTTTAAGATTTACTCTCTTAGCAA---CTTTCAAATATGCCATACAGTATTATTAGCTGTAA TCACCATGCGGTACATTACATCCTCATGACTTACTTATTTT--ATAACTGGGAGTTTATACCTTTTGACCCCCATGACCT -----------ATAACATTC--TTTTTT---ATGGAGGATGA----------TGTTTTGTAATTGAAATGGGTTTTATTT TAAAAATCTAGA >Myotis_myotis AGATGATATATTGCCAAAAGTTTTTAACTTTAATTGCAACCTTGTATGAT----T---CTAACATTCTTTAAGTTT--T- ----------GTTAAATTGAGGTAT----AATTGACAAGT-AACTTTATATTAGTTTCAGGCATACAACGTAATGATTCA ATATTTGTATATACTACAAAATGATCACCACAGTAAGTCTAGTTAAC--ATCTGTCACCATACATAGTAACAAACATTTT TTT-CTTACGAGGAGA--TTTTAACATTTACTCTCTTAGAAT---TTTTCAAATATGCTACATAGTGTTATTAACCATAG TCA-----CTGTATATAATATCTTCATGACTTATTTACTTT--AAAACTTGGAGTTTGTATCTTTTGACTCCCTTCACCC -----------ATAACATTCTTTTTTTT---ATGGAGGATGA--------TTTTTTTCATAATTGAAACA----TTATTT TTAAAATCTAGA >Rousettus_aegyptiacus AAATGATACATTGCTGAAAGGTTTTAATTTTAGTTATAACATTGTATAAT----T---ATAACATT-------------- ---------------------------------GACAAAT-AACTTTATGTTAGTTTAAGGTGTACAATATAATGATTTG ATAATTGTATACACTATGAAATGCTCACCATAATAAGTCTAGTTACC--ATCTGTCACCATATGTAGTTACAAAAATTTT TTTTCTCATGATGAGACCTTTTAAGATTTACTCTCTTAGCAACAGCTTGCAAATATGTCAAATGGTATTATTAACTATAG TCACCACGCTGTACATTACATCCCCATGACTTATTTATTAT--ATAAGTAGAAGTTTGTGCCTTTTGACC-CCTTCACCC -----------ATAATATT---TTTCTT---ATGACGGATGA--------TTTTTTTAGTAATTTAAGTGGGTTTTATTT TTAAAATCTAGA >Canis_familiaris AAATGATACATTGCCAGAAGTTTTTAATTTTAGTTGCAACATTATATAGT----T---ACAACA-------TTTTT--A- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------ATGGATGATGA-----------GTTTTATAATTGAAAGAGGTTTTACTA TTAAAATCTAGA >Felis_catus AAATGATACATTGCCATAAACTTCTAATTTTCATTGCAACATTATATGAT----T---ATAACATTC----TTTCT--T- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------ATGGAGGTTGA-----------ATTTTATAAGTGAATGGGGTTTTACTA TTAAAATCTAGT >Manis_javanica AAATAATATTTTACTAAAAGTTGTTAATTTTAGTTGCAACATTGTATGAG----T---ATAACA-------TTCTTTAA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------ATGGAGGATGAT----------TTTTTGTAATTGAAATGGGTTTAATTT TTTGAATCTAGA >Sus_scrofa AAATGATATACTGTC-AAGATTTTTAATTTTAATTGCAACATTGCAGGAT----T---GTAACATTCTT--TTTTA--T- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------ATATAAGATGA---------TTATTTTGTAATTGAAATAGATTG---TT TAAAATTATAGA >Bos_taurus AAGTGATATTTTGCC-AAAGTTTTTAATTTTAATTGCAACATTGCATGAT----T---ATAACATTCT---TTTTT--T- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------ATGGAGGATGA---------TTTTTTTGT-ATTGAAATGGGTTTGATTT TTAAATTATACA >Condylura_cristata AAATGACATATTACTGAGAGTTTTTAATATTAGTTGCAAAATTGTACTAT----T---ATAATT-------TTTTC--C- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------ATGGAGGATGA---------GTTAAATGTTGTTAAAAGGGGTTTTATTT TTAAAATCTAGA >Erinaceus_europaeus AAATGCTGTATTG--------------------TTGCAACATTGTATGAT----T---ACAACA--------TTTT--T- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------ATGGAGGATTCTTTTTTTTTTTTTTTAATAATTGACA--------GTTT TAAAAATCTAGA >Homo_sapiens AGATAATATATTGCC-AAAATTCTTGATTTTAGTTGCAACGTTATATGACTGTAT---GTAGCATCG----TTTGT--T- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------ATGGAAGATGA----------TTTTATGTAATTGA-----GTTTTATTT TTAAAATCTGGA Bat52_LINE >L1MA9_3END -------------------------------------------------------------------------------T TTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATATACG TATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTAC---------------- --CATTTTTTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAAATTTCAAGTATACAATACA-GTATTATTAA CTATAGTCACCATGCTGTACATTAGATCTCCAGAACTTATTCATCCTGCATAACTGAAACTTTGTACCCTTTGACCAACA TCTCCCCATTTCCCCCAC------CCCCCAGCCCCTGGCAACCACCATTCTACTCTCTGCTTCTATGAGTTTG------- ---------------ACTTTTTTAGATTCCACATATAAGTGAGATCATGCAGTATTTGTCTTTCTGTGCCTGGCTTATTT CACTTAGCATAATGTCCTCCAGGTTCATCCATGTTGTCACAAATGGCAGGATTTCCT-TCTTTTTTAAGGCTGAATAATA TTCCATT--------------GTGTATAT------------------------------------ATACCACATTTTCTT TATCCATTCATCCGTCGATGGACACTTAGGTTGNTTCCATATCTTGGCTATTGTGAATAATGCTGCAATGAACATGGGAG TGCAGATATCTCTTCGAGATACTGATTTCATTTCCTTTGGATATATACCCAGAAGTGGGATTGCTGGATCATATGGTAGT TCTATTTTTAATTTTTTGAGGAACCTCCATACTGTTTTCCATAATGGCTGTACCAATT-TACATTCCCACCAACAGTGTA CAAGGGTTCCCTTTTCTCCACATCCTCGCCAACACTTGTTATCTTCTGTCTTTTTGAT-AATAGCCATT----------- -------------------------------------------------------------------------------- ------- >Equus_caballus CATACCTACTGCTGGTCATTT-GCGTCTAT---CAACTTTCAAAGTATGT--CCCA---TCTCTTTATTTAGTTT----- TTTTCCAGTTTTATTGAGGAATAATTGACATA-CAACACCGTATAAGTTTAACGTGGGCAGCATGATGGTTTGATTTA-- CATATGTGGTGAAATGATTGCCACAATAGGTTTAGTTAAC--ATCCATCATCTCATATAGATACAGTAAAAAGAAAAG-A AAAAAAATTTTCCTTGTGATGAGAACTCTTAGGATCTACTCTCTTAACAATTTTCCTGTATATCATACAGGGAACGTTAG CTACAGTCCTCATGTTGTACATTACATCCCTAGTACTTATTTATCTT--ATAACTGGTAGTTTGTACCTTGGGACCACCT TC-CTTCAATT-CTCCTTACCTCACCCCCTGTCTCTGGTAACCACAATCCTGATCTCTTTTTCTATGAGTTTGGTGTTTT TTTGTTTTGTTTA------TTTTAGATTCCACATATAAGTGAGATCATACAGTATTTGTCTTTCTCTGTCTGACTTATTT CACTTAGCATAATGCCTTCAAGGTCCATCCATGTCGTCACAAGTGGTAGGATCTCCTAA-TTTTTTATAGCTAAATCATA TTCCATT-TATATAC--------------------------------------------------TTACCACAACTGCTG AATGCATTCATTCATTGACGTACGTGTAGCTTGTTGCCATGTCTTGGCTAGTGTAAACAATGCTGCTATGTGCATACGGG TGCAGATA-------------------TTGTTTTCTTTGGACATATTTCCAGATGTGAAATTGCTGGATCATA-GGTATT TCCTTTTTTAATTTTTTGAGGAAGCTCCATACTGTTTTCCAGAGTGGCTGCACCAATT-TACAGTCCCAATAACTGTGCA CAAAGGTTCCCCGTTTTCCAGACCCACACCAGCATTTGTTATCTCTTGTCTTTTTGATCTA-----------TCACTCTA TCTGAACA---AACTACACAGGTCTTAGCCACCA-------TCA-------TCTTT--TTCTTG---------GAGTAAC AG-AAAT >Ceratotherium_simum CGTCCCTACTGCTTGTCTTTTTCAGTCTAT---CAATTTTCAAAGTAAAT--CCCA---TCTCTTTATTTAATTT----- TTTTCCAGTTTTATTGAGAAATAGTTGACATA-CATCACTGTATAAGTTGACGGTGTATAGCATGATGGTTTGATTTA-- CATATATTGTGAAATGATTGCCACAATAGGTTTAGTTAAC--ATCTGTCACCTCATATAGATACAGTAAAAAGAAAAGAA AAAAAAATTCTCCGTGTGATCAGAACTCTTAGGATCTACTCTCTTAACAGCTTTCCTGTACATCATACA-GCCATGTTAG TTACAGCCATCATGTTGTACATTACATCCCTAGTACTTATTTGTCTT--ATAACTGATAGTTTGTACCTTGAGACCACCT TA-TTTCAATTCCCCCTTCCCTCACCCCGAGCCTCTGGTAACCACAAATCTGATCTC-TTTTCTATGAGTTTGGTGTTTT TTTATTTTGTTTT------TTTTAGATTCCACATATAAGTGAGATCATACAGTAATTTTCTTTCTTTTTCTGACTTATTT CACTTAGCATAATGCCTTCAAGATCCATCCATGTTGTTGCAAATGGTAGGATTTCCCCA-TTTTTTATGGCTGAATAATA TTCCATA-TATATAT----------------------------------------------ACACATACCACAAATTCTC AATGCATTCATTCATCAATGTATATTTAGGTTGTTTCCATTTCCTGGCTAGTGTAAATAATGCTGCTATGAGCATGGAGG TGCAGATATCTTTTCGAGTTAG-TGTTTTGTTTTCTCTGGATATATTCCCAGAAGTGAAATTTCTGGATCATATGGTAGT TCTATTTTTAATTTTTTGAGGAACCTCCACACTGTTTTCCATAGTGGCTGCACCAATT-TACAATCCCACTAATAGTGCA CAAAGTTTCCCTTTTCTCCACATCCACACCTGTATTTGTTATCTCTTGTCTTTTTGATCCA-----------TTGCTTTA TCTAAACT---AAATACTCTAGTCCTAACCACTA-------TCA-------TCTTT--TTCTTG---------GACTGAC AA-AACA >Myotis_myotis CATCCCTACTGCTGTTCATTTTAAATCCAC---CAACTTTTAAAGTATAT--TTCA---CCTATTT-CTCCCCCC----- ACCCCCAGTTTTATTGTGAAATAATTGACATA-CATCAATGTATAAGTTTATGGTATACAACATGATGGTTTGATT---- ----TATTGTGAAATGATTACCATAGTAATTTTAGTTAAT--ATCAGTCATCTCATGTAGATACAGTAAAAAGAAAAG-- --TGAATTTCTTCTTCTAATGGGAACTTTTAGGATCTACTCCCTTAACAAGTTTTCTGTATATTATTCA-GCAGTGTTAA GTATAGTCGGCATGCGGTATGTTACATCCCTAGTATTTATTTATCTT--ATAACTGGAAGTTTGTAACTCCTAACCATTC TC-CTCCAATTCCCTTTCCCTCTACCTCTTGCCTCTGGTAATCAAAAGTCTAATCTCTTTTTCTGTGCAATTGGTGGGGT GTTTTTATGGTGTGTGTTTTTTGTGATTTCTCTTTTAGAT-------TACAGTATTTGTATTTCTCTGTCTGACTTATTT TACTTAGTATAATGTCTTTAAGGTCCATC-ATGATGTTGTAAATGGCAGGATTTCCTCA-TATTCTGTGACTGAATAATA CTTAATAGCATGTG------------------------------------------------CATATA-CACAACCTCTG TATCTATTCATCCACGAATGAACACTTAGGTTGTTTTTACGTCTTGGGTATTACAAATAATGCTGTGATAAACATGGGGG TTCAGATATCTTTTCAAGTTAGTGTTTTTGTTTCCTTTAAATATATTCCCAGAAATAGAATTGCTGGCTCACATATTAGT TCTATTTTTAATTTTTTGAGTAACTTTCATACTATTTTCCCTAGTGGCTGCACCGGTT-TAAATTCCTACCAACAGTGCA CAAGGGCTCCCTTTTCTCCACATCCTAGCCAGAATTTGCTAACTCTTGTC-TTTGGAGCCA-----------TCTTTCCG TCTTAACT---GGATTCTCTAGTTCTAACTACCA-------TCA-------TCTTT--TTCTTT---------GACTGTC AAAAACA >Rousettus_aegyptiacus CATCCCTACTGCTGCTCATTTTCAGTCCAT---CGACTTTCAAAGTGTAT--TCTA---TCTCCTCCCCTGCCCC---CA CCACCCAGTATTGTTGTGGAATAATTGACATA-CATCATTGTATAAGTTGAAGGTATGCAGTATGATGATTTGATTTA-- TATGTATTATGAAATGATTACCACAATAGGTTTAGTTAAC--ATCCATCATCTCATATAGATACAATAAAAACAAAG--A AAAAAATTTCTCCTTTTGATGAGA---CTTAGGATCTACTTCCTTAACAAGTTTCCTATATGTTATAGA-GTGATGTCAA CCATAGTCATCCCAATGTACATCACGTCCCTAGTACTTATTCATAAC---------GAAGCTTGTACGTTGAGACCACCT TC-CTCCAATCCCCCCTCCCTCCACCTCTCACCCCTGGTAACCACAAATCTGATCTCTTTTCCTGTGAGTTTGATGGGAT GTTTCTTTGTCGT--------------------TTTAGGT-------TATAGTATTTATCTTTCTCTGTCTGATTTACTT CACTTAGCATAATGCCTTCAAGGGCCATC---ATTGTTGTAAATGGCAGGATTTCCTCATTTTTTTATGGCTGAATAGTA TTCTGTTGTGTGTATGTGTGCGTGTATATACACACACACACACACACACACACACACACACACACACACCACAACTCCTG TATCCATTTA-----------GCACTTAGTTTGTTTTCATGTCTTGGCTTCTATAAATAA---TTTAATAAGTACAGAGG TGGAGATATCTTTTCAAGTTAGTATTTTTGTTTCCTTTGAATAAATTTCCAGAAGTGGAATTTCTGTGTCATAAAGTAAT TCTGTTTT---CTTTTTAATTAAGTT---TATTGGGTT-AACATTGGTTAATACAATTATATAATTTT------------ CAGGTGTACCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----------NNNNNNNN NNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNN-------NNN-------NNNNNNNNNNNNN---------NNNNNNN NNNNNNN >Canis_familiaris CATGCCTATGTGGAGTCATTT-CAATCCAT---TGACTTTCAAAGTACAC--CCCA------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------TCTCTTTG TCTTAGCT---GAATACCCTTCTCCTGATCACTA-------TCA-------TCTTTTATTCTTG---------GACCACC AA-AAAT >Ailuropoda_melanoleuca CATCCCTACTGGTAGCCATTT-CAATCCAC---TGACTTTCAAAGTATAG--CCCA------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------TCTCTTTA TTTTAACT---AAATACCCTTCTCCTGACCACCA-------TCA-------TCTTT--TTTTTGCGGGGGGGTGGCTACC AA-AAAT >Manis_pentadactyla TGTCCCTGCCCATGGCCATTTGGCATC------CGGCTTTCAAAGTGCCT--CCCA------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------TCTCTTCG TTGTCCCT---GGACACCCTGGCGCTAACCACCA-------TCA-------CCTTT--TTCTT----------GATCAAC AA-AAAT >Sus_scrofa TGTCTCTAGCACTTGTCATTTTCAATCCAT----AACATTAAAAGTGCAT--CCCA------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------TTTCTTTA T-----CT---TAATACCCTAGTCCTGACCACCATCTGCCTTCAAATTTTCTCTTT--TTCTTA---------GACTATC AA-AAAG >Tursiops_truncatus CGTCTGCACCACTGGTCCTTTTCAGTCCTT---CAACTTTCAAAGTATAT--CCCA------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------TCTGTTTA TCTTAACT---GAATACCCTAGTCCTAACCACCAACTCCTTTCACCTTAT-TTTCT--TTCTTG---------GACCACC GA-ATCC >Condylura_cristata CAGCCCTGTTGCTGGACATTTTCTGTTTAT---CAACTTTCATTGGATGT--TCTA------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------TCCCCTTT TCTTAACT---GAACACCCTCATCCTAACACCCA-------CC--------TCTTT--TATTTACCCCT----GAGTGCC AA-GAAA >Sorex_araneus CATGCAGACCACTGGCCATTTTCAACCCCTGCCTAAACTTCAAAGTATAAAGTCCA------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------ACTCTTTA TCTACACT---GAATATCCTCGTCCTTACCACCA-------TTA-------TCTTC---CCTACTA-------GATTGC- ---TAAT >Homo_sapiens CACCTCTACTGCTACTTATTTTGCATCCAT---CAACTTTCAAGCTATAT--CCTG------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------TCTA---- TCTTAATG---GAATACTCTTGTCCTAACCACCA-------TCA-------TGTTT--TCCTTG---------GACTGCC AA-AAAT Bat53_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---TTTTT-----CCAGCTTT---ATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATG TTTTGATATACGTATACATTGTGAAATGATTACCA------------------CAA-----TCAAGCTAATTAAC---AT ATCCATCACCTCACATAGTTACCATTTTTTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAG--------CAAAT TTCAAGTATACAA-TACAGTATTATTAACTATAGTCACCATGCTGTACATTAGATCTCCAGAACTT----ATTCATCCTG CATAACTGAAACTTTGTACCCTTTGACCAACATCTCCCCATTT-----CCCCCACCCCCCAGCCCCTGGCAACCACCATT CTACTCTCTGCTTCTATGAGTTTGAC-------------------TTTTTTAGATTCCACATATAAGTGAGATCATGCAG TATTTGTCTTTCTGTGCCTGGCTTATTTCACTTAGCATAATGTCCTCCAGGTTCATCCATGTTGTCACAAATGGCAGG-- --ATTTCCTTCTTTTTTAAGGCTGAATAATATTCCATTGTGTATATA--------------------------------- -TACCACATTTTCTTTATCCATTCATCCGTCGATGGACACT------TAGGTTGNTTCCATATCTTGGCTATTGTGAATA ATGCTGCAATGAACATGGGAGTGCAGATATCTCTTCGAGATACTGATTTCATTTCCTTTGGATATATACCCAGAAGTGGG ATTGCTGGATCATATGGTAGTTCTATTTTTAATTTTTTGAGGAA--CCTCCATACTGTTTTCCATAATGGCTGTACCAAT TTACATTCCCACCAACA--------------------------------------------------------------- -------- >Myotis_myotis TTTCTG----------GCTCA-TTTAAAACATGTTCA------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------AAGGGTTGTTGTTTTTTTACATAT--TTAT---CTTCATTTTATTC---------------- -----TTTAAAAACTCTTTTT---ATTAAGATATGTTTGAGCTAT-AGCACTGGGTAAGTGTAAGGTGTGCAGCATGTTG ATTTGGTACA--TTTGTGTGGCAGTCTGATCGCTA------------------TTG-----TCATGTTAGCTCAC----A CTTCTCCGTGTCACAGAACTG----TTTCCTTTTTGTGGTGGGAATAATGCAGGTCTGGTCTCTCAG--------CAAGT TT-ATGATTAAGA-CCTAGTCTTGTTGTCTAACATCATTAGACTGGGCACTAGATCTCCAGGACTT--ACTTATCTACTC CTTTGTTACACGTGTGCACCC-TTAAAAACAATCTCTGCTATT---------CCTACTCCTGCCCCTGGGAACCACCATT TTACTCTACGTCT--ACCCGCTTGAC-------------------TTTTTTAGATTCCACATATAAGCGATATCGTACAG TATTTGTCTTT-TCTCTCTGAGTTATCTCACTTAGCGTAATGCCCTCAAAGTTCATCCATGTTGTTGCGAATGGCAGG-- --GTTTCCTTCTTTCTCGTGGGTAAATGATACTC----GTGTATAAA--------------------------------- -----ATGCCATCTTTCTCTGTTCACCTGCTGATGG-CACTTACTAGTAGGTTGTTTTCATGTCTTGGCTATTGTGAATG AAGCTACAGTGAACATG-GAGTGCAGGTATCTCCCCCATATTCTGTTTTCATTTCCTTTGGGT-TATACCCAGAAACAGA ATTGCTGGACCATATGGTAGTTCTATGTTTAATTATTTGAGGAA--TCTCCTCACTGTTTTCCATAGCGAGTGAACCACT TGCCATTC------------CCTCATTTTAGTT---CTATAACATCTCTGTGGAATCAGTATTAGTAATGCAGATGATAA CAGCTGAT >Rousettus_aegyptiacus CTCCTGTCAGACGTGGGTTCG-TTTAAAATATGCTCG------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AAGCTCTCG-------GGCGTCA--TTAT---CCTCACTTTACTT---CCCTCCCCCACCC CCCCCCCCAAAAAAAAAATTT---ATCGAAATACACTTGACGTGT-AACACCGTGTACGTTTGCA------CGCGCGGGG ATCCA--ACAGGTTTCTACTGCAGTACGATCGCCA------------------CCC-----CAGCAGCAGCTCCCGGGGG GTCTACCACCTCCCATAATCATCTTCCCTTTTTTCATGGCGAGAATAATGAAGGTCCAGCC----AG--------TAAGT TTGATGACGGCGG-TACGGTATCGTTGTCTGCAGTCACCGTGCTGTACGCTAGCTCTCCGGGACTTGAACTGACCTACTT ----GTTGCCAGTCGGAATCC-TTG---AATGTCTCTCCTATCCCCCGCCCCGCCACCCTGGCCGCTGGCAACCACCATT TTACTCTCCATTTTCACCAGTTTGGC-----------------TTTTTTTCAGAGTCCTCGCAGAAGCACTATCGTAGGG TGTTTGTCTCTTCCTGTCTG-TCCCCGTTGCTTAGCATAACGCCCTCTAA----ATCCGAAATGT----GATTGCACGAG ATGTTCCCTTCCTCCTCCTGGCTGGATAACACGCACATCTGCATACGTC----------------------TGTATGCAC ATTTCACACCTTCCTTATCCACTCACCTGCTGATGGGCACT------TAGATCGGTTCC-TACCTCGGCTGCTGTGAATG GTGCGGCAGTGAGTATGGGGTTTCTGCTATCTCGTCAATATCCTGTTTTTATTCGCC-------TATACCCGGAGGTGGA ACTGCTAGATCATATGTTAGTTCTACTTTTAACTTTTTTAAGAC--GCCCCATGCTGTCTTCCATTGAGGCCGAACCGCT TCACATTC------------CCTCATTTGATTC---TTATACCATCTCCATGGAAGTGATTTTAGTAATGCGATCGACAA TAGTCAAT >Condylura_cristata TTTCAGTACAGCCTAGCTTCC-TTTGAAAAATGTTCA------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AAGTTTTGT-------GAC-TTT--GAA-------CATCTTATTC---------------- -----ACTGAGGTACAATTTTTTCATTGAGCTCTAATTGCCCTGT-AACATTATGTAAGTTCAAAGTATACAAAGTGCCA ATTTGATCCATTTTTATATTGAAACGTGATTGTCA------------------TTGTAGGATAGCATTAGCTAGC----- -------------------------TGATTATTGTATGAT---AGTAAAGAAAATCTGGCCTCTTAGGATGTGCAGATGT GCAAAGTTTATAA-ATCAGTGTTGTTGTCTGTGATACCCAGACTGTACATTAGCACTTCAGGACTT----GTGTTTACTG ----ATTACAAGTGTGTGTTC-TTA---AACATCTCCTTAATT-----CTCCCACACTCCAACCCCTGCTAACCATCATT CTACTCCCTGCTTTAACAACTTTAGTT----------------TTTTTTTTAGATGTTACAGATAAGTGAGATCACACAG AAGTTGTCTGT----ATCTGATTTACCTCACTTAGCACCATGTCCTCAAGGTCCATTCGTGTTGTTAATAATGGCATG-- --GCTTC--TCTTTTTCGGGGCTGAATAATATTCCACTGTGTGTACAACATGGTATTGTACATACTTATGGAACATCAAT ATGC-GTCTCATCTTTACCCACTCACTCATTGACAAATATT------TAGGTTGTTTTCAGATCTAGGCTGTTTTGAATC ATGTGACAACGGACTTGGGAGTGCCACTATATCTTCCATTTTCTA-TTTCATTTCTGTTGGGAAAACACCCAGAAGTGGG ATGTTTGGGTCCAATGGTGGTTTTATGTTTAATTTTTTGAGGAAACTCTCTATGGTTTTTTCCATAGTGTCTTAACCAAT TTATATTC------------CCTCA-TTTATTT---TTATAATATCCCTCTGGGATGGGTATTAGCAAAGTGGAGAACAA ---CCAAC >Uropsilus_gracilis TTTCTGTCCAGTCTAGGTTCC-TTTGAAACATGTTCA------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AAGTTCTTT-------GACATATATTTAT---CCTCATCTTATTC---------------- -----AATATAATTAATCTGTAACATT-ATGTATAATTAATCTGT-AACATTATGTAAGCTCAAAACTTATGACATGTCG ATTCCATCCATGTATATATTGCAGTGGGATTGTTGACCGCCATGGGATTGTCCTTG-----TAGCACTAGCTAGC---AC CTCCATTACAGCACTTGACACTCATTTCTTTTTTTATTATGGGAATAAAGAAGACTTAGCCTCTTAG--------CATGT CTGGAGTATGTGATTACAACAGTGTAGTCTGTAATCCCCATGCCATGCATCAATACTTCAGGACCT----CTGTTTACTG ----ATTAAAAATGTGTACC--TTA---AACATCTCCTCAATC-----GCCCCACACCCCAACCCCTGGTAACCACCACT CCACTCTCTGTTTTAAGAACTTTAGCTTTTTAACAACTTTAGCTTTTTTTTTTATTCCACATGGGAG----ATCACACAA CCATTGTTTTT----GTCTGATTTATCTCACTGAGC------------------ACCCACATTGTTGATGATGGCAGG-- ---ATTCCTTCTTTTTCATGGCTGAATAATATTCCGTGGTGTGTATACTATAGAACTAAACATACTATTGGAACATTCAG GTATTATCACATCTTTATCAACTCATCCAGTGGCTGATGCT------TGGCTTGGCTTCAGATCTAGGCTATTTTGAAGA AGGCTACCACAAACATGAGAGTACAGCTAGCTCTTCTATTTTCTAAT----TTTTGAGGGGCAACACACCCAAAAGTAGG GCAGTTGGGTCAGCTGGTGGTCCTATTTTTAATTTTCTGAAG-------------TGTCTTCCA-AGTGTCTCAACCAAT TTACATTC------------CCTCA-TTTACTT---TTATCATATTCCTGTGGGATGGGT-TTCGTAATGTGAATGATAA CAGCTCAC >Canis_familiaris TCTCCATCAAACATAGGCTCA-TTTCAA-CACGTTT-------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------GAAG-TCCTT-------GATGTAT--TTAT-------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------CCTCATCTTACTC---TTATAATATCCATACGGAATTGTTATTAGTCATGTGGATGGTAA TAGCTAAT >Felis_catus TTTGCATCAGACATAGGCTCA-TTTCAA-CACGTTTT------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------AAAG-CCCTT-------GGTGTAT--TTAT-------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------CCTCATTTTAT-----TCATAATACCCCTAGGGAATTGTTCTGAGTCATGTAAATGCCAA GAGCTAAT >Phataginus_tricuspis TTTCTGTTGGACATAGGCTCA-TTTAAAGCATGTTT-------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------AAAGTTCCTT-------GGCATAT--TTAT-------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------CCTCATTTTATTC---TGATAATATCCCTCTGGGATCGGCATTAATAATGTGGATAATTA TAACTAAT >Sus_scrofa TCTCTGTCAAACATAGGCTCA-TTTAAAGCATGTTTA------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AAATTCTTT-------GACATAT--TTAT-------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------CCTCATTTGATTC---TTATAATATCCCTGTGGGATTGGTATTAGGAATGTGGATGATAA AAGCTAAT >Bos_taurus TTTCTGTCAAACATAGGCCCATTTTAAAACATGTTTA------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------CAATTCTTT-------GGCATAT--TTAT-------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------CCTCATTTTATTC---TGATAATATCCCTGTGGAATTGGTATTAAGAATGCAGACGATAA TGGCTAAT >Equus_caballus TTTCTGCGAGACGTAAGTTCA-TCTAAAACACATTCA------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AATTTCCTT-------GACATAT--GTAA-------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------CTTCATTTTATTT---TTATGATATCCCCATAGAATGAGTGTTAGTGATGTGGATGATAA TAGCTCAT >Ceratotherium_simum TTTCTGTCAGATATAAGTTCG-TTTAAAACAAGTTCA------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AAGTTCCTT-------GACATAT--GCAT-------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------CCTCAATTTATTC---TTATGATATCCCCATGGAATGGGTATTAGTGAAGTGGATGATAA TAGCTAAT >Homo_sapiens TCTTTGTCAGGCATAGGTTCA-TTTAAAACATGTTCAGCCGGGCGCGGTGGCTTATGCCTGTAATCCCAGCACTTTGGGA GGCCGAGGCGGGCAGATCACAAGGTCAATAGATCGAGACCATCCTGGCTAACATGGTGAAACCCCACCTCTACTAAAAAT ACAAAAAATTAGCCAGGTGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAAC CTGGGAGGCGGAGCTTGCAGTGAGCTGAGATCCACCCCACTGCACTTCAGCCTGGGTGAGAGTGCGAGACTCCATCTCAA AAAAAAAAAAAATATTCCAAAGTTTGTT-------GACATAT--TCAT-------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------CCTTATTTTATTC---TTAT---ATTTCTATGGAGTTGGTATTAGTCATGTGGATAAGAA TAGCTAAT Bat54_LINE >L1MA9_3END ------------------------------------------------------------------------------TT AATATCCAAAATATATAAGGAACTCAAACAACTCAATAGCAAAAAAACAAAT------------AACCCGATTAAAAAAT GGGCAAAGGACC-TGAATAGACATTTCTCA----AAAGAAGACATACAAATGGCCAACAGGTATATGAAAAGATGCTCAA CATCA-CTAATCATCAGGGAAATGCAAATCAAAACCACAATGAGATATCACCTCACACCTGTTAGAATGGCTATTATCAA AAAGACAGAAGATAACAAGTGTTGGCGAGGATGTGGAGAAAAGGGAACCCTTGTACACTGTTGGTGGGAATGTAAA-TTG GTACAGCCATTATGGAAAACAGTATGGAGGTTCCTCAAAAAATTAAAAATAGAACTACCATATGATCCAG-CAATCCCAC TTCTGGGTATATATCCAAAGGAAATGAAATCAGTATCTCGAAGAGATATCTGCACTCCCATGTTCATTGCAGCATTATTC ACAATAGCCAAGATATGGAANCAACCTAAGTGTCCATCGACGGATGAATGGA-----TAAAGA------------AAATG TG-GTATATATACACAATGGAATATTATTCAGCC-TTAAAAAAGAAGGAAATCCTGCCATTTGTGACAACATGGATGAAC CTGGAGGACATTATGCTAAGTGAAATAAGCCAGGCACAGAAAGACAAATACTGCATGATCTCACTTATATGTGGAATCT- -------------------------------AAAAAAGTCAAACTCATAGAAGCAGAGAGTAGAATGGTGGTTGCCAGGG GC-------TGGGGGGTGGGGGAAATGGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAG-- -----------------TTCTGGAGATCTAATG-------TACAGCATGG---TGACTATAGTTAATAATAC--TGTATT GTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCACCACACACAAAA----AAATGGTAACTATGTGAGGT GATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTA AATATATACAATTTTTATTTGTCAATTATA-------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------CCTCAATAAAGCTGGAAAAA-------------------- -------------------------------------------------------------------------------- ---------- >Canis_familiaris CATTTATATACAATGCACAAGGCATACAAAAATCAATCATTAAT----TAA-----TTCATGC---AAAAGAGTC---TT AGTATACTTAATATATAAAGAACCCATATTACTAATTAGCAAAAAATCAAAC------------AATCTGATTTAAAAAT GGGCAGAAGGTCTTCAATAGATATTTTTTTTA--AAAGAAAACATTCACATGACCAACAGGTACCTGAGAAGATGTTCAA CATCA-CTCATCATCAGGGAAATGCAAATCAAAAGGTCAATGAGGTATCACCTCATGCCTATTAGAATGGCCAAAATCAA CAACACAAGAAACTACAGGTGAGGTTCAGGATATTGAGAAATGGGAACTCTTCTGTGC--ATGGTGGGAATATAAA-TTG CTACAGTCACTATACAAAATAGGATGGAAG-TCCTCAAAACACTACAAGTAAGACCAC---ATGATACAC-TATTTCAAC TTCTGGGTACTTATTTGAAGAAAATGAAAA-ACTAACTCTAAAACAGATATGCGCCTACATGTTCATTACAGTATTATTT ACAATAGCCAAGATGTGGAAACAACCTAAATGTCCACCGACAAAAGAATGAA-----TATGCA------------ATAGA CACACAGACACACGCA---AAATATTATTCTCCCATAAAAAAAGAATGAAATCTTGCCATTT---ACAATGTGTATGAGC CTTGAAGGCACTATGTTAAATA---------AGCCAGAAAAAGGCAAACAGCATATGATCTCACTTATATGTGGGATCT- --------------------------AAAAAACAAAAACTAAACTCATAGATACACAGGATAGACTAGTCTTTGCCAGAG GC------------GAGGAGTAGGGTGGGTAAAGG-AAGTCAAAAGATACAAACTTCCAGTTAT--AGAGTAAGTAAG-- -----------------TCATAAGGATACAGTA-------GACAGTATTG---CAACCATACTTAATAATATTGTGTATC ACACATTTGACAGTTGCTAAGA--GTAAACCTTAAAAGTTCTCATTATACATAAAAT-TAATTCTGTAATTTTGTA--GT GATGG--TTGTTAACTAGACTTATTGTGGTGATCACTTCACAGTATGTATAAATTTGGAATCATTATGTTGTATGCCTGA AACTAGCATGATGTTG-TATGTCAATTATA-------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------CCTCAATTA--------------ACAA---------AAT- AAAATAAAAAATACTTAT---TT----TAG------ATTTACC-CTTCTCAGTTAAT----------CACTATTCAATTT GGGGTTACTC >Felis_catus TCTTCATATACAAAACACAAGGCACACAAAAATCAATCATTAATCCAATAA-----TTCATCC---AAAAGATAC---TT AGTA----AAATATATAAAAAACTCATACCACTTAATAGTCAAAT----------------------------------- ---TAGGTGACC-TGAGTAGATATTTTTTT----AAAGAAGACATTCATATGGCCAACAGGTACATGAAAATGTGTTCAA TATCA-CTAATCCTCAGGGAAATGCAAATCAAAATGACAATGAGGTATCACCCCCTGCATGTTAGAATAGCTAGTATCAA AAGGGCAAGAGACAACAAATGCTGGTGAGGATGTTGAGAACAG-GAATTCTTATGCAC--ATGGTGGGAATGTAAA-TTG GAGCAGTCATTATGGAAAACAGTATGGAAG-TCCTCAAAAAATTGCAAATAGGACAAC---ATGATCCAC-CAATTCTAC TTCTAGGTATTTATTTGAAGAAAATGAAAAAACTAACTCCAAAAGACATATGCACCTCCATGTTCATTATAGCATTATTT ACAATAGCTAAGACATGGATACCACCTGAGTGTCCATCAACAAATAAATGAATATGTTATACACACACACACACAACACA CACACACACACACACACAAGAATATTATTCACCTAT-AAGAAATAATGAAATCTTGCCATTTGCAACAACATGGATGAAT CTTGAGGGAATTATGTTAAATGACATAAGTCAACCAGAAAAAGACAAATACCATATGATCTTATTTATATGTGGGATCTA AAACCAAAGCAAAACAAACAACAACAACAAAAAAAAAACCGAACTC--AGATACAGAAAACAGATTGGTTGTTACTAGAA GCTGGGAATGGTTGTCGGGGTGAAA-----GAAGA-GAGTCAAAGGGTATAAACTTCCAGTTAT--AAAGTGAATAAG-- -----------------TCATGGGGATATAATA-------TACAGCATGG---CAACTATACTTAGTAATAC--TGTATC ACACATTTGAAAATTGCTGAGA--GTAAATCTTAAAAGTTCTCTTCATACACAAAATGTAATTATACAATTTTGTATGGT GATGG--TAGTTACCTAGGCTCACTGTGGTAATCATTTCACAACATTTATAAGTATGAAATCATTATATTGTACACCTGA AACTAATATAACGTTG-TATGTCAAATATA-------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------CCTCAATAA--------------AACA---------GAC- AAAAG---------TTAC---TT----TAG------ATTTACC-CTGTTCAATGAATGACTTCAT--CACAATTTAGTTC TAGGTTACTC >Manis_javanica TTTTC--ACATAAAACACAAGGCATAT-AAAATCCATCATTCA-------------TTCATTT---AAAAGCTAC---TT ATTT-----AAAATGTAA-GCACTCATGCCATTCAATAGCAAAATAAACA--------------AATATGATTAAACAAT GA-CAGAAGATC-TGAATAGACATTTTTCT----AAAGAAAATATACAGATGTCCAACAGACACATGAA---------AA TGTCACCTAATCATCAGGGAACTATAAGTCAAAACCTCAATGAGATATCTCCTCAGAGCTGTCAGGAGGGCTAATATAAA AAAGAGAAGAG---ACAAATGCT--TGAGGATGTGGAAAACAGAGAACCC-TGTGCACTGTTGGTGGGAATGTAAA-TTG GTGCAGCCTCTGTGCAAAGCAGTATGGAGGTTCTTCAAAATACTAAAAATGGAACTACCATATGATCTAGTCAATTCTAT TTCTGGATATTTATTCAAAGAAAGCAAAAATATCAGCTTGAAAAGATACATGCACTCCCACATTCAATGCAGTGCTGTTT ATGATAACCAAGATATGGGAA-AACCTAAGTGTCCATCAACAGATGAACAGG-----TAAAGC------------AAAT- ----TACACTCACACAC-----TATGATTCAACC-TTAAGAAAGAATGAAACCCTGCTATTTGCAACAATGTGGATGGAC CTTGAGGGCATTATGCTAAGTAAAATA----AGATAGAGAAAGACAAATACCTTATAAGCTCACTTACATGCAGAACCT- ------------------------TAAAAAAGAAACAAACAGGCTCTTAGAT--AGAGAACATATTCGTGGTTACCAGGG GCAGGGGGTTGCAGGGTGGGTGAAATGGATGAACA-TAGTCAATAGGTTCAAACTTCCAGTTAT--AATATAAATAAG-- -----------------TCATGGGAATGTAACATACATCATATAGTATGTTATAGTCTATAGTTAATAC-----TGTACT GCATATTT-AAAGTTGCTAAAAGAGTAAGTTTTAAAAGTTCTCATCACAAAGAAAA-----TTCTGTAACTATGTATGGT AATGG--ATGTTAATTAAACATATTAAGCTGATCATTTCATCATAC-TGCACATATTGAATTGT--TATTGTACACCTGA AACTAATATAATGTTG-TATGTCAATTATA-------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------CCTCAATTG--------------AAAAAAAGGAAAAGACA AAAACACAAGTTACTTAT---TT----TAG------ATTTACT-CTGTTCAATAAATGAG-TTATT-CACTAATTAGGTC TGGGATATTC >Myotis_myotis TCTCCATATAAAAAGCATAAGGTATGT-AAAATAATTTATTAATGAATTAA-----TTAGTTC---AAAAGATAC---AT ATCA-----AAAATATAAAGAAGTCTTACCACTCAATAGCAAAAATATCAAAATATTTAATCCAAATATTGTTTAAAAAT GGGCAAAGAATC-TCAGTAGACATTTTTTTTTCCAAAAAAGACATTAAGATGGCCAACAAGTACGTGAAAAGATTCTCAA AATCA-CTCATCATCA--GAAATGCAAACCAAAACCACAATAAGGTACTACCTCACACCTGTTAGAATGGCTATGATTAA -AAGACAAGAAATAATAAATTATAGCAAGGATGTGGAGAAAAGGGAACCTTTGTGCACTGTTGGTGGGATTGTAAATTTA GTGCAGCCACTATGGAAAACAG-------GTTCTTCAAAAAATTAAAAATATAACTACCATGTGATTCAG-CAATTCCAC TTTTTGAAATGTAACCAAAGGAAACAAAGCCACTAACTAAAAATGATATATGCACCTTCATGTTATTTGCAGCATTATTT ACAGTAGGCAAGCTATGGAAACAACCTAAGTGTCCATTGATGGATGAATGGA-----TACACACACACACACAC-ACACA CACACACACACACACACTGGAATAATATTAGGTTATTAAAA---AATGAACTCTTGACATTTAAGAC-ACATTAGTGGAA GACAAAAGCATTGTG-TAAGTGAAATAAGTCAGACAGAGAAAGACAAATACTGTAAGACCTCATTTATATGTGGGATCTA AATAAAACAA------------AACAAACAAACAAAAAACAAGCTCAGAGATACA-AAAAGAGATTGGTCGCTGTAAGAG GT--GATGGTGGGGAATGGGTGAAATGGGCGAAGG-AATTCAACAGGTATAAACTTCTATTTAT--AAGATAAATAGAAG AAATTTATAAGATAAACTTCTATTTATAAGATAAATATATTATAGCAGAGCAACAACTACAGTTAATAATAC--TGTATT GCATATTTGAAAGTTGGTAAGAGAGTAAATATTAAAAATTCTCATCAGAAGAAAAA--AAAATCTATAATTATGTAATGT GACAG--ATGTTAACCAGACTTATGGGGATGATCATTTTGCAAAATATAAAAATACTGAATCAT---GTTGTGCACCTGA AACTAATATAATTTTATTATGTCAACTAGAGGCCTGGTGCACGACATTCGTGTACTTGGGGGCGGGGGTGTCCCTCAGCC CGGCCTGCGCCCTTTCGCAGTCGGGGAGCCCTTGGGGGAGTGGGCCTGCGGGGAGTGGGCCTAAGCCTCAGTCGGACATC CTTAGCTCTGCCATGGAGGCAGGCCACTGTGCTCGCCAGCCATCAGCCTGGCTTTTGCCTGAGCAGTGCTCCCGCTGTGG GAGCACACTGACCACCTGTGTGTTGAGCATCTGCCCCCTGGTAGTCAGTGGTGTCATAGTGACTGGTCATTTTGCTGTTC CATTAACTTGCATATTACCCTTTTATTATATAGGATTACACCTCAGTAA--------------AAAA---------GA-- ---------------TAC---TT----TAG------ATTTACC-CTGTTCAATAAATGAG-TTATT-CATTGTTAAGATC TGGGCTACTC >Rousettus_aegyptiacus TCTCCATGTACAAAGCATAAGGCATAA-AAATTCAATCATTGAT----TAA-----TTAGTTC---AAAAGATGC---CT ATCA----AAATATATGTAAAAGTCATACCACTCAGCAAAAAAAAAAAAA--------------AAAATGATTAAAAAAT GGGCAGAGGATT-TCAATAGACATTTTTTC----AAAGAAGACATTAAGATGGCCGA---GTACATGAAAAGATGTTCAA CATCA-CTAATCATCA-GGAAATGCCAAT--------CAATAAGAGATCATATCACACTTGTTAGAACGGCTATTATCAA AAAGACAAGAGATAACAAATGCTGGCAAACACGTGGAGAAAGGAAAACTCTTGCACA---TTGTTGGAAATGTAAA-TTG GTGCAGGCACTACAGAAAACAGTATGAAGATTCTTCAAAATATTAAAATTGGAACTACCATATAATCCAG-CAATTCCGC TTCTGGGTATTTAGCCAAAGGAAG-AAAAATACTACTGAGAAATGATGCATGCATCCCCATGTTCATTGCAGCATTATTT ATAATAGGTAAGCTATGGAAACAACCTA--TGTCCATCAACAGATGAATGGA-----TAAAGA------------AAATG TA-GTATATACGCACACAGGAATATTATTCAGCCATTTAAAA--ACTGAAATGTTGGCATTTGTGACAACATGGATGAAC CCTGAGGACATTATGCTAAGTGAAATA----CAACAAACAAAGACAAATACTCCATGATCTCACTTACATGTGTAATCTA CAATAAAATAAAAACAA-----AACAAACAAATAAACAA-AAGCTCATAGATACAGAGAAGAGATTGGTGATTGCCAGAG GTGAGAAG----GAGATGAGTGAAATGGGTGAAAG-AATTCAA-AGGTACAAACCTTCAGTTAT--AAAATAAATTAA-- -----------------GTTTGATGGTATAACG-------CACAGCATGG---CAACTATAGCTAATAATAT--TGTGTT GAATATTTGAAAGTTGCTAAGAAGGTAAATCTTAAAAATTCTCATCACAAGAAAAA----TTTCTGTAACTTTGTATGGT GAC----ATGTTTACTAGACTTATTG---TGATCATTTTGCAATATATTCAAATATTTAAT-----TGTTATACACCTGA AATTAATATAATTGTG-TATGTCAATAATA-------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------CGCCAATAA--------------AAAA---------GA-- ---------------TAC---TT-------------ATTTACT-CTGTTTAATATATAANNNNNNNNNNNNNNNNNNNNN NNNNNNNNNN >Sus_scrofa TGTTTACATACTAAGTACAAAGCATAC-AAAATCATTCATTCATCT--TCA-----TTCATTC---AAAAGACAC----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------TTGTTTTAG------ATTTATC-CTGTTCAATAAATG---TTATT-CACTATTTAGATT AAGCCTACTC >Bos_taurus TCTTTGTATACAAAGTACAAAGTATGC-AAACTCAATTGTTACTAC--TAAATCCATTCACTC---AAAATATAC----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------TTGTTTTATCGGTACACTAATC-CTGTTCAATAACTATG-TTATTCCACCATTTAGGTT GAGGCTACTC >Equus_caballus TCTTCACACATAAAGCACAAGGCACAC-AAAATCGATCAATTAT----CCA-----TTCACTC---AAAAGATAC----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------TTATTTTAA------ATTTACC-CTGCTCAATAAATGAG-TTATT-CATTATTTAGGTC TAGGCTACTC >Ceratotherium_simum TCTTCACATACAAAGCACAAGGCATGC-AACATCAATCATTCAT----TCA-----TTTATTC---AAAAGATAC----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------T-ATTTTAG------ATTTACCTCTATTCAGTAAATGAG-TTATT-CACTATTTAGGTC TAGGCTACTC >Condylura_cristata TGTTTACACACAAAGTGCAAAGCATGC-AAGATCAAGCAGTAAT----TGATA---ATTTTTC---AAAGTTTGC----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------TTATTTTAG------ATTACCC-CTGTCTGACAAA--AATTTATT-CATTATTTAAGTC TAAGCTGCCT >Erinaceus_europaeus TTTTAATATATAAAACACAAGACACAT-AAAATCAAT-GTTGA-------------CTAATTC---AAAGATTAT----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------TTAATTTAG------CTCTACC-CTATTTAAGAAATGAG-TTATA-TTCAATTTAGGTC CAGGATATTC >Homo_sapiens CTTTCATATACAAAGCACAAGGCTGAA------CAACTATTAA-------------TTAATTC---AAAAGATAC----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------TTATTTTAG------ATTCTTC-CAGTTTAATAAATGAA-TTATC-CACTTTTTAGGTC TAGGGTATTC Bat72_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTT TTG-------------ATATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACA TAGTTACCAT---------------------------------TTTTTTGTGTGTGGTGAGAACACTTAAGATCTACTCT CTTAGCAAATTTCAAGTATACAATACAGTATTATTAACTATAGTCACCATGCTGTACATTAGATCTCCAGAACTTATTCA TCCTGCATAACTGAAACTTTGTACCCTTTGACCAACATCTCCCCATTTCCCCCACCCCCCA------GCCCCTGGCAACC ACCATTCTACTCTCTGCTTCTATGAGTTTGACTTTTTTAGATTC------------------------------------ ------------------------------------------------- >Equus_caballus AATCAAAAGACTCTAAGATATT---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------GTG-GA-T-TTTTCCAA-TTACCAAAT-------AGAAGTG---TA TTTCCC-------CCCAGCTTTATTGAAAAATAATTGCTATGC-ATCCCTGTATAAGTTTAAGGTGTACAGGATGATGGT TTG---------------GTTTACATATAGTGTGAAATGATTACCACAATAGGTTCAGCTAAC--ATTCATCATCACGTA TAGATACAATAAAAAGCAAAGAAAAAAGGGA------AAAAAATTTTCTCCTTGTGATGATAACCCTTAGGATTTACTCT CGTGGCAACTTTCCTGTACATTGTACAGCAGGGTTAGCCACAGTCATCATGGTAAACGTTACATCCCTAGCACTTATTTA TCTC--ATAACCGGAAGTTTGTCTCTTCTGACCACCTTC-CTCCAATTCCCCCTCCCTGCACCTTCCGCCTCTGGTAATC ACAAGCCTGATTTCTTTTTCTGAGTTTGTTTTCGTT-----------TTTGT------TTT---AAA--------GAGGG CAAATATT---ACAGAAT-TCTCTTGGGAAGAAAATATGTTCTCCTTCA >Ceratotherium_simum AATCAAAAGACTCTAAGATATT---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------GTG-GA-T-TTTTCCAA-TTACCAAAT-------AGAAGTG---TA TTTTTC-------CCCAGTTTCATCGAAAAATAATTGCTGTGC-ATCACTGTATAAGTTTAAGGTGTACAGCATGATAGT TTG---------------ACTTATGTACATTTTGAAATGATTACCACAATAGCTTCAGCTAAC--ATCCATTATCGAGTG TAGATACAATAAAAAGAAAAGAAAAAAGGA-------AAAAAAAATTCTCCTTGTGATGACAGCTCCTAGGATTTAGTTT CTTAGCAACTGTCTTGTATATTGTATGGCACTGGTAGCCACAGTCATCACGTTGTACGTTACGACTCTCGTACTTATTTA TCTT--ATAACTGAAAGTTTGTATCTTCTGACCACCTTC-CTCCAATTCCCCCTCCCCCTCTCCTACACCTCTGGTAATC CCAAGTCTAATTTCTTTTTATGAG-----------G-----------TTTTT------TTT---TAA--------GAGGA AAAATATT---ATAGGAT-TCTGTTAGGAAGAAAATATGTTCTCCTTCA >Myotis_myotis CATCAAAAGATTCTAAGGTATT---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------GTG-GA-TTTTTTTCAATTTATCAAAT-------AGAAGTG---TA TATTTT--------TCAGTTTTATTGACA-ATAATCGGCATAC-ATCACTGTATATATTTAAGGTGTACAACATGATTGT TCA---------------AATCACATATATGGTGAAATGATTACCACAACATGTTCAGCTAAC--ATCCATCTTCTCACA CAGATACAATAGAAGAA--------------------TAAAAAACTTCTCCTTGTGATGAAAATGCTTAGGATTTACTCT CTTAACCACTTTCCTATATATCACACTTCAGTGTTACCTATA---ATCATGTTGTACGTTATATCCCCTGTGCTTATTTA TCTT--ATAACTGGAATTTTGTACCTTTTGACCATCTTC-CTCTATTCCCCTTTCCCCCCACCCTTTGTC---------- -----TATAATTTCTTTTTCTATG------ATTTTT-----------TTTCT------CCT---GAA--------GAAGA CAGATT-----ATAGGAT-TCTCTTTGGAAGAAAATATGCTCTCTTTTA >Rousettus_aegyptiacus CGTCAAAAGACTCTAAAATATT---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------ATG-GA-T-TTTTCCAATTTATCAAAT-------AGAAGTG---TA TTTCTG--------AGAGTTTTATGAAAAAATAATTGACATAC-ATCATTGTATAAGTTTAAGGCACACAACATGATAGT TTATGTTTGTACATGATGAATTATAAATCTTGTGAAATGATTACCACAATAGGTTCAGTTAAC--ATCTATCTTCTCATA TAAATACAATAAAAAGAAAAGAAGAAAAGAAAAACTGAAAAGAAATTCTCCTTCTGATGATAACTCTTAGGATTTACTCT TTTAGCAATTTTCCCATACATCAAAC-AAATTGTTAGCCATAGTCATCACGTTGTACGTTATATTTCTAGTACTTATTTA TTTT--GTAACTGGAAGTTTGTACCTTTGGATCATCTTC-CTCTACTTCCCCCTCTTCTCACCCTCTGCCTCTGCTAACC GCAAGTCTGACCTCTTTTTCTATGANNNNNNNNNNN-----------NNNNN------NNN---NNN--------NNNNN NNNNNN-----NNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Canis_familiaris AATC-AAAGACTCTAAGATATT---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------GTACTTTTTTTTTTCAATTTGCCAAAC-------AGAAGCA----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------TTTTT------TTT---AAA----------GGG CAAATACT---ATAGGAT-TTTCTTTAGAAGGAAATATGTTCTCCTTCA >Felis_catus AATC-GAAGACTCTGAGATATT---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------GTG-TA-T-TTTTCCAGTTTACCAAAC-------AGAAGTA----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------CATTT-----TTTT---AAA--------AAGGG CAAATATT---ATCAGATGTTTCTTTT--GAAAAATACGTTCTCCTTCA >Manis_javanica AACC-ACAGACTCTAAGGTATT---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------GTG-GA-T-TTTTCCAATTTACCAAAT-------AAAAGTG----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------TACCT-----TTTT---AAA-------AGAGGA CAAAC------ATAGGAT-TCACTTTGGAAGAGGATATGTTCTCCTTCA >Sus_scrofa AATCAAAAGATTGCAAATCATT---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------GTG-CA-T-TTCCCCAATTTACCAAAT-------TGAGGAA----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------TATTT-------TT---AAA-----AAAGAGGA TAAGTAGT---ATAAGAT-TCTCTCTGGAAGAATGTATGTTCTCCTGCA >Tursiops_truncatus AATTAAAAGACTGTAAGATACT---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------TTG-CA-T-TTTTCCAAGTTACCA-AT-------TGAAATG----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------TATTT------TTT---AAA-----AAAGAGGA TAAATAGT---ATAAAAT-TCTCTTTAGAAGAAAACACGTTCTCCTTCA >Condylura_cristata AATCCAAAGATTCT--GATATT---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------GTG-GA---TTTCCCAATTTA----AT----------AGAA----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------TACTT---TTTATT---AAA-------CAAGAA CAGATATT---ACAGAAT-TTTCTTTAGGAGAAAGTGTGTT-----TCA >Solenodon_paradoxus AATAAAAATACTCT--AAGAAG---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------CTG-TAGTGTTTTCCAGTTAACCA-----------GAAGTG----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------TATTT--TCCTTTT---GAA--------GAGGA CAAGTATT---ACAGAAT-ACACTGTGAGAAAATATAT--TCTCCTTCA >Homo_sapiens AACCAAAAGACTCTAAGATAATTATTTTATTTTATTAGGGTATAATTGACAAAAAATTTGTACATATTTAGTTTCATAAT ATGATGTTTTGATATGTGTACACATTGTGAAATGCTTAAATGAAGCTAATTAACATGCATCACCTCTCATACTTATTTTT TGTTGTGAGAACATTTAAGATCTCTCTCAGCAATTTTCAAGTATATAATACATGATTATTAACTATAGTCACCATATTGT ACAATAGATCTCTTGAACTTATTTCTCCTGTCTAACTGAAATTTTTATCCTTTGATCGAAGCTTGTCTTTCCCCCACTTC CTCCTCCCTCAGCCCTTGGTAACTACCATTCTACTCTCTGCATCTATAAGTTTGACTTTTTTAGATTTTAGGTATATGTG AGATCGTGAAATACTTTAAAGACTCTAAGACAGTGTA-GA-T-TATTCTAATTTACCATATATATATGGTAAATA----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------TATATATATATTTT---ACAATCAGGATAAGAG TAAGTTTTTTCACAATGT-ACTCTTTGGGAGAAAATATGTTCTCTTTCA Bat78_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------AAAAAATGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATAC GTA----------------------------TATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGT CAATTATACCTCAATAAAGCTGGAAAAA---------------------------------------------------- -------------------------------- >Canis_familiaris TCTAAGTGCAGTGGAGAACCCTTAATGAG--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------TTGTAAGCAG------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------GAGAATGG--------TCTTATGTGC-TGTTTT---AAGGAT TATA--------------ACTATGCAAGGTGATGG--ATGTTAACTGAACATACTTTGCTAATCATTTCACAATATATAC AC-----------------------------CACCACGTCAGTATGTTGTGCACCTAGAACAAACACAA-CACTACATGT CAAGCATAGCTCAACATAC--AGA-------AAACAACCCG---TCCAAGGCTGGAGTGGGAAGAGAAATGAAAACGGGG GG-CGGAGGCAGGACCAGCTGGGGAGCGGGGC >Felis_catus TCCAAGTGCAGTGGAGAACCACTAACGGG-----TTTTTTTTTTTTAATTTTTTTTTTTTAACGTTTATTTATTTTTGGA CAGAGAGAGACAGAGCATGAACGGGGGAGGGGCAGAGAGAGAGGGAGACACAGAATCGGAAACAGGCTCCAGGCTCCGAG CCATCAGCCCAGAGCCCGACGCGGGGCTCGAACTCACGGACCGCGAGATCGTGACCTGGCTGAAGTCGGACGCCCAACCG ACTGCGCCACCCAGGCGCCCCAACCACTAACGGGTTTTAAGCAG------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------GAGAATGGTGCGG---TCTTATTTGC-TGTTTT---AAAGAT TATA--------------ACTATGCCAGGTGATGG--ATGTTAACTAAACATATTTTGC---TCATCTCACAATATGTAT GCAT--------------------------CTATCTCATCAGTACGTTGTGTACCTGGAACGGATACTG------TATGT CAATTACAGCTCGACG-----AGA-------AAACAATCCA---CCTGAGGCCAGAGTGGGAAGAGAGATG--------- ---------TAA-------TGCAGCAGGGGGC >Manis_javanica TCTAAGAGCAATGGAGA--------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------GTGG---TCTTATTTGC-TGTTTA---AAAGAT TGTA--------------ACTATGTGTGGTGAAGG--ATGTTAACTAAACTTATTCTACT-------------------- -------------------------------------------------------------------------------- -------------------------------------TCCA---TCTGAGGCCGGAGTAGGAGGGCTGA----GTTGGGA AG-CTGCTGAAA-------TGAGGCAAGGGAT >Myotis_myotis TCTAAGTGCAAGGGAGAGCCATGAACAAG--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------TTTTAAGCAG------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------ATGAATGGTGTGG---ACTTATTTCG-TGTTTA---AAAGAT TGTA--------------ACTCTGTGTGGCGATGG--ATG-AAACTAAGCTTATTCTGCTAATCATTTTGCCATCTATAC ATAT---------------------------TAGCAAATCATTATGTTGGGCACCTAAAACTAATATAA-TGC--CATGT CAGTTATAGCTCAACAAAG--AAAA------CAAAGTTCCA---TTTGAGGCCAGAGTGGGAGGAGAGATG-AGTTGGGG AG-CTGCTGAAATGAGAAGTGAGGTAGGGGCT >Rousettus_aegyptiacus TCTAAGTACAGTGGAGAACTAATAATGGG--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------TTTTAAGCAG------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------GAAAATGGTGTGG---TCTCATTTGC-TGTTTA---AAAGAT TGTA--------------AGTATATGTGGTGAGGG--ATGTTAACTAAACTTATT---CTAATCATTTTGCCATATATAT ATATATATATATATATATATATATATATATATGCCAAATCATTATGTTATGCATTGAAAATGAATACAA-TGCTACATGT CAATTATAACTCAATAAAG--AAAAA-----ACAAACACTG---TCTGAGGCCAGAGTGGGAAGAGAGATG-AGTTAGGG GG-TTGCCAAAA-------TGAGGTAGGGGCA >Sus_scrofa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------TTTGGCAC------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------CAGGGCGGCAGGG---ACCTAGCTGCTTGTGTG---AAAG-C TGCA---------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TCTGAGGC---AGAGGGAGGAGAGG----------- ---CTTCAGGAA-------CGAGGAAGGGTAC >Tursiops_truncatus -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------TGTCAAGCAC------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------AGTGATGGCAGG----TCTGATCTGCTTGTGTG---AAAG-C TCCA---------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TCCGAGGCC------GCGAGGGAGGCG---TCTGGA GG-CTGCGGGAA-------CGAGGAGGGGGCC >Equus_caballus TCTAAGTGCGGTGGAGAACCA-TAAGGGG--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------TTTTAAGTGG------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------GAGAATGGCATGC---TCTTATCTG-TTGTTTA---AAAG-C TCCG---------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TCTGAGGCCAGAGTGGGAGGGGAGGGG-AGCTGGGA GC-CTGCTGAAA-------TGAGATAGGGGCT >Ceratotherium_simum TCCAAGTGCAACGGAGAACCA-TAAAGAG--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------TTTTAAGCAA------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------GAGAATGGCATGGTCTTCTTATTTG-TTGTTTA---AAAG-C TCCG---------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TCTGAGGCCAGCGTGGGAGGGGAGATG-AGTTGGGA GC-CTGCTGAAA-------TGAGGTGGGG-CT >Condylura_cristata CCTAAGTTCAGTGGAGAGCCATTAATGAG--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------TTTTAAGCAG------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------GAGAATGATAAAA---TCTTACTTGCTTGTTTA---AA-G-C TCCA---------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TCTGATGCCAGGGT--GAAGGGAGGGGCAATTGGGA GG-CAGCTGAAA-------AGAGGAAGGGACT >Erinaceus_europaeus TGTAAATACAATCGAGGACTAATCAGGAA--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------AGTGACATTGGCTTTTAAAAATGTCCTCTATTAATTAATTA ATTAGTATATTGAACAAAGACAGAAATTGAGAGGGAAGTAAGAAATAAAAGAGGGAGAAAGAGAGACACATACAGGCCTG CTTCCCTGCTTCTGAAGCCTCCTTCTCCCTGCAGGTAAAATGAGGACTGGAGACTTGAATCTGGGCCCTTGCACATGGGG ACATGTTTGCTCAGTTGGGTGTACCAGCTTCAGATCCTGAGAATGACAAGG---TCTTATTTTCTTGTGTA---AAAC-C TC-A---------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TCTGAGATGAAACCAGAAAGAGAAGTG--AGTGGGA AG-CTGCTAACA-------TGAGGAGGGGACT >Homo_sapiens TCTAAGTAGAGTGGAGAACCATTAAGAGA--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------CTTTAAGTAG------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------GAGAATAGAATGG---CCTAATTTGCTTGTTTG---AAAG-A TCCA---------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TCTGA-GCCTGAGTAGCAGGAGGGAGCCGCCTAAGG GGTCTGCAGAAG-------TG-GGTTGGAGCT Bat84_LINE >L1MA9_3END -------------------------------------------------------------------------------- ---------TCAAAGGGTACA---------------AAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGT --ACAGCATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTT----------------------------- -----------GCTAAGAGAGTAGA------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------TCTTAA GTGTTCTCACCACACACA-AAAAAATGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTT CACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATA AAGCTGGAAAAA-------------------------------------------------------------------- ----------------------- >Myotis_myotis AGACTTAA-A----TGATAATAAACATA-TTTTTATAATGCTGGAAAGTTGTCAA-AATGTTTATT---AACAAAATCAT CCAAGG-----------TACA---------------ATCTTCAAGTCAT--A----TGATAAGTCTTGGGGATATAATAC --ACAGCATGGTAACTGCAGTTAATAATATTGTATTGTATAC-TGAAATTT----------------------------- -----------TCTAAGATAGTTGA------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------TCTTAA AATTTCTCATCACAAGGAGGAAAATTTGTGACTATGTATGGTGATGG--ATGTTAACTAGACTAATTATGGTAATCATAC CCTAATGTGAACAAATATCAAATCATTATGCTGTATACCCAAAACTAATGTCATGT---TATGTCAGTTATATCTCAATT TTTTAAAA-------------AAAATAATCATCC-------AATG--------------ACTCTCCTTTGACAACAAAG- --AACTTGAATCTCAGCAAATTG >Rousettus_aegyptiacus AACCATTG-AT-GCTAATAGTAAACACATTTTTTAGAATGCTGGGAAGTTTACAA-AATGTTTATT---GACAAAATTAT CTAAGG-----------TACA---------------ATCTTCTAGTTAT--AAAAGGAATAAGTCATGGGGATATAATAT AAAAAGCATGGTGACTGTAAGTAATAATACTGTATAT------TGAAATTT----------------------------- -----------GCTAAGA--GCAAG------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------GCCTTA AATTTCTTATCATAAGAA--AAAAATCATGACTATGT--GGTAATGG--ATGTTACTTAGACTTATC-TGAGGATAATTT CTCAATATATACAAATATCAAGTCATTGTGTTGTACACCTGAAACCAATGTTATAT-------GTCGTTATACCTCAATT TAAAAAATTA-----------AAAATAATCATCT-------GATG---CAAGAAGTATGACTCCCCTTTGATTGCAAAG- --AACTTGAGTCTCAGCTAATTG >Condylura_cristata AACACATG-GT-GGTAAAAATAAACA---TGTGTACAAGGCTGGGAATTTCACCA-AATGGTTTTT---GAAAGAATTAT CTAATT-----------TACAGTTTGATGTTAAGCAAACTTCCAGTTGC--AAAATCATTAAGTC---GGCATGTCATAT --GCAACAAAATGCCTGCCTGCAAAAATACAGCACAGTGTATGTGAATTTTTAAAGATTAATTTATTTATGCTTACAGAA CTGGGGTACAGGCCAGAGGTGCAGGGGCGGTGAGAGAATTCACCAGAGTCAGAGTGGGGAGCAAAACAGGCCGACTGACG AAGTACACTGCTGAGGGGAGCAGCAGGCAGGTCAGGAGAGGTCTGCCGCACCATGTGGGTCACCTCAGGGCGGGAATCGA ACTCATGCTGAAGTGACTTTAGCTTCTTAGTGCTGCGTTTACCCGATGTGGCATCAGGGAGGGCCCTGAGTCCCTCTTTA ATATTTCCATCGTAAGAA---AAAAATGTAAGTATGCATGTTGAG----CTGTTAACTAAATTTATAGCGATGATCATTG CACAATATATGCAAATGTAGAATCA--GTGTTTTACACCTGCAACTAATACAATAT-TATGTGAGAAGCGTATCTCAATT AAAAAATAATAAAAACAA---AAAAGAATGATTT-------GATG---CAAGAAGTATGA-----CTTTGAGA--AAAG- --AAC-TAAATCTCAGAAAATTG >Sorex_araneus AGCCATTG-GT-GATAATAATAAAAAATATTTGTAGGAAGCTGTGAATTTTACAA-AATATTTAGT---AAAATAATCAC CAAA----------------------------------CTTCCATTTAT--AAAATAAGTAAGTTG-GGAGAGATAAT-- ------TATAGT------------TAACACAGCAATGT-----TGAAATTT----------------------------- -----------GCCAAGACTGTAGA------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------TGTTGA G--TTCTCATTGTGAGGA--AAATTCTGTAACTATTTATGGTTATGG--ATATTCACTAGAGTTATA-TAATAATTATTT CACA-----TACAAATGTGAAATCATTGTATTTCACACCTGAAACCAATATAATGTTCAATTGTCCATATTATCTCAATT AAAATAATTAAAAC-------AAAAAAATCATTT-------GATG---CATGAAGTGTGA-CACCATTTGA----AAAG- --AATTTAAATCTGAGAAAAATG >Canis_familiaris CACCTTGA-CT------------ACACA-TTT-TGAAATGCTGGGCAGCTCACAA-AATGTTTCTT-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------AAAAGAATCATCT-------GATG---CAAGAAGTATGATCCCTCTTTGATAACAAAG- --AAC-TGAGTCTCAGAAAATTG >Felis_catus AGCCTTCA-CT------------ACACA-TTTGTGAAGTGCTGGGCAGCTCCCCAAAATATCTATT-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------ACAAGAATCATCT-------AATG---CAAGAAGTGTGACCCCTCTTTGCTAACAAAAA T-AAC-TGAGTTTCAGAAAATTG >Manis_pentadactyla AGCTTTTT--T------------ACACA-TTTGTAGAATGCCAGGCAGTTCACAA-AATGTTTATT-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------CAAAGAATCAGCCGATGCAAGATG---CAAGAAGTACAACTCCCCTTTAATAGCAAAG- --AAC-CAAATCTCAGAAAATTG >Sus_scrofa AGCCTTTGAGT------------ACACA-TTTGTAGACTGCTGGGAAGTTCACAG-AATGTCTATT-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------AAGAGAATCATCT-------GACA---CAAAAAGTATGACTCCCTTTTGATACCAAAAA TAAACTTGAGTCTCAGAAAATTG >Bos_taurus AGCCTT---GT------------ACACA-TTTGTAGAATGCTGGGCAGTTTACAA-AATATTTATT-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------AAAGGAGTCATCT-------GATC---CAAAAAGTGTGACTCCCCTTGGGTAACAAAAA --ACCTTGAGTTTCAGAAAACTG >Equus_caballus GGCATTTGACT------------ATGCA-TTTGTAGAATGCTGGGTAGTTCACAA-AATTTTTATT-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------GGAAAAATCATCT-------GATG---CAAGAAGTATGACACCTCTTTGACAAGAAAG- --AAT-TGAGTCTGAGAAAATTG >Ceratotherium_simum AGCTTTGC-CT------------ACACA-TTCGTACAATGCTTGGCAGTTCACAA-AATATTTATT-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------GAAAGAATCATCT-------GATG---CAAGAAGTATGAGTCCCCTTTGAAAACAAAG- --AAC--AAGTCTTAGAAAATTG >Homo_sapiens AGCCCTTAACGATATTTAAAAAAACACA-TTTGGAGAATGCTGGAAACTAAACAA-AATGTTTACT-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------AAAGGAATCATCT-------GAGG---CAAGGAGCATGATTTGTCTTTGA----AAAT- --AACTTGAGTCTCAGAAAACTG Bat85_LINE >L1MA9_3END -------------------------------------------------------------------------------- ------------TTTTTCCAGCT----------------TTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTA AGGTGTACAACGTGATGTTTTGATATA----------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------CGTATACATTGT-------------- -------GAAATGATTACCACAATCA-AGCTAATTAACATATCCATCACCTCACATAG---------------------- ----------------------------------------------------------------------- >Equus_caballus GTGGGTAAGCG-----AGGCTTAATCCCATTGGAGATTC--TGAGAAATGGTGTAGA---CTATGCCTCTTTTTTGTGT- --CTGTAGACTTTTCTTTT--------------------TAATTGACATATAACTGACATAT-AAAATTATGTTAGTTTT AGAGGTACAACATAGTGATTCGATATT----------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------TGTGTATACTGT-------------- -------GAAATGATCACCACAATAA-GTCTAGTTAACA--TCCATCAC------TAG---ACTATGCTTCA-----TTT TTTT---------ACCC-AAGAATAAAAG--AGAGGAATATTTATCTAATATCTCCCATCTCCTAAGTGGT >Ceratotherium_simum GTGGGTAAGTA-----AGGCTCAATCCCATCGGTGACTCTTTGAGAAATGA-GTAGA---CTATGCCTCTTTTTTGTGT- --CTGTAGATGTTTCTTTT--------------------CAATTGAGATATAACTGACATAT-AACATTATATTAGTTTT AGATGTACAACATAGTGATTTGATATT----------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------TGTGTGTACTGT-------------- -------GAAATGATCACCACAATTATGTCTAGTTAACA--TCCATCTC------TGG---ACTATGCCTCA-----TTT TTTT---------ACCC-AAGAATAAAAG--AGAAGAATATTTATCTAATATCTCCTGTCTCCTAAGTGGT >Myotis_myotis ATGAGTAAGTA-----AGGCTCAATTCTGTTGGGGACTCTTTGAGAAATGGTGTAGA---CTATGCCTCA--TTTATTT- ------------TTCTTTTCTTATGGTGGACTTTTTAAAATATTGAGGTATAATTGACATAT-ACCATTATATTAGTTTC AGCTGTACAGCGTAATTATTTGATATA----------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------TGTATATATTGT-------------- -------GAAATGATCACCACAATAA-GTCTAGCTAAACT-TCCATCAC------TGG---ACTATGCCTCA---TTTTT TTTT---------ACCCAAAAAATAAAAG--AGAGGAATATTTA---------------------AATGGT >Rhinolophus_ferrumequinum GTGGGTAAGTA-----AGGCTCAATCCTGTCAGGG-CTCTTTGAGGAATGGTGTAGA---CTATGACTCT----TCTTT- ------------TTTGTTT--------------------AACTTGAGATATAATTGACATTT------TATATTAGTTTC AGGTGTATACCATAATGATTTGATATACAGAGGGTGCCAAAAAGATGTCTACACATTTTAAGAAAGGAAAAAACTCTATT AAAATTCTAATTATATATACCGATAACAAAAGATGATGCATACAAGACACATTTGATTTCTGCCGTTACAAGAGATGCTC AAAGTGATTACCATCAGCATAATTTGAAAACAGGTTTTTTCCTTTCTTAAAATGTGTATACATTTTTTTCGGCACCTTCT GTATATCAAAATGATCACCACAATAA-GTCTAGGTAAAA--TCCATCAG------TGG---ACTATGCCTCATTTTTTTT TTTT---------ATCC-CAAAATAAAAG--ATAGGACTATTTATCTGATGGCTCCCATCCCCTATCTGGT >Uropsilus_gracilis GTGGGTAAATA-----AGGTTCATTCTCTTTAGGAACTCTTTGAAGAATGGCATAGT---ATATGCCTCA--TTTTTGT- ------------TTATTTTGGCATGAACACTTT------TAATTGAGATATAATTGACATAT-AACAATACAT------- --------GACACAATGATTCCATGTG----------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------GGTACA-AATGC-------------- -------AAAATAATCATTACTGTGA-GTCTAGTAAGCA--TTCTTTGC------TGA---ACTATGC---------TTT TTTT---AAAAAAACT--ATAAAT--AAG--ACAGGAATATTTTTATACTGATTCCTGCTCCCTAAGTGGT >Solenodon_paradoxus GTGGCTGAGTCTCGTTGGGCTCCACCCTACTAGGGAATCCTTGAGGAATGGTATAGA---CTATGTCTTA--TTTTGGG- ------------------GGGAATGGACTTTTTA-----AAATTGAGATATAATTAACATAG-AACATTCTATTA-TTTC ATACATACAATGTAATGATTTGGCATT----------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------TGTATGTATTGC-------------- -------AAAACGATGACCATAATTC-ATCTAGGTTGCA--TTCATTGC------TGG---ATTTTTCT----------- -------------ACTC-AAGAATAAAAG--AGAGAAATATTAATCTAGTGTCTCCCATCCACTAAGTGGT >Canis_familiaris GTG--TGAGTA-----AAGCTAAGTCTTACTGGGGATTCATTGAGGAATGATATAGA---ACATAACTCA--TTTGTTA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------ACCC-AAGAATTAAAA--AGAGCAATATTTATCTGATGGATCCCTTCCCTTAAGTGGT >Felis_catus GTG----AGTA-----AGCCTCAGTCCCACCAAGAACTCATTGAGGAATGGTGTAGA---ATATAA-TTA----TGTTT- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------ACCC-AAGAATAAAAG--ACAGCAATATTTATCTAATAGGTCCCATCCCTTAAGTGGT >Manis_pentadactyla GTAGGTAAGTG-----AGACTCATTCCTACTGGGGACTC--TGAGGAATGATTTAGA---CTATGCCTCA--TTTGTTT- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------AGCA-AAGAATAAAAG--AGAGGAATATTTATCTGATGGCTCCTGTCCCCTAAGTGGT >Sus_scrofa ATGGGCAAGTA-----AGGTTCCGTCCCACTGGGGACTC--TGAGGAATGGTGTAGA---CTCTGCCTCA--TTTTTTT- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------ACCC-AAGAAGAAAAGAGAGAGCAATATTTATCTAATGGCTCCCATCCCTTCAGAGGT >Tursiops_truncatus GTA-----ACC-----AGCTGTAATCCCATGGGGGATTC--TGAGGAATGGTCTAGA---CTATGCCTTA-TTTTTTTT- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------ACCC-AAGAATAAAAGAAAAAGGAATATTTATCTAATGACTCCCATCCCTTTAGAAGT >Homo_sapiens GTGGGTAAGTA-----AACCTCAGTGCCACTAGGGATTGTCTGAGAAAAGGTATCAA---TTACACCTCA--TTTTTTA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------ACCC-AAGAATAGAAG--AAAGGAGCATGTATATAATGCTTCCCATCCC----GTAGT Bat99_LINE >L1MA9_3END -------------------------------------------------------------------------------- ---GCCTTAAAAAAGAAGGAAATCCTGCCATTTGTGAC-AACATGGATGAACCTGGAGGACATTATGCTAAGTGAAATAA GCCAGGCACAGAAAGACAAATACTGCATGATCTCACTTATATGTGGAATCT-------------------------AAAA AAGTCAAACTCATAGAAGCAGAGAGTAG-AATGGTGGTTGCCAGGGGCTGGGGG-------------------------- ----------GTGGGGGAAATGGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGA GATCTAATGTACAGCATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAG TGTTCTCACCACACACAAAAAAATGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCA CAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCT-CAA--- TAAAGCTGGAAAAA------------------------------------------------------------------ --------------------------- >Sus_scrofa TTAACTCAGACATTTTCTATTTTTTGAGAA-AGCTTGG---CTAGAGATGATC---AAAA---GTCTAGGAAAAAAGGGA ---------------------ACCCTATCATTTGC----AACATTAACGGACCTTAAGGGCATTATGCTAAGTGAGGTAA GTCAAAGAAAAA-------GTACCATATGTTCTCACTTATATG-ACAATTTAAAG-CAAAACAAAAACCAAAGAACAAAA TAAGCCAACTCATATATACAGAGAACAGAATTGGTGGTTGCCAGAGGTAGGGGG-------------------------- ------------------------TGGGGGTGGGTCAAAAGGTACAAACTTCCAGTTAGGAA------ATAAGTCCTTGG GATGTAA-GTATAGCATGGTGACTAAAGTTAAAAATACTGTATTGTATATGGGAAAGTTGCTAAGAGAGTATATCTTCAA AGTTCTTATTACAAGAAGAAAAAGTGTAACTATGTAAGGTGATGG--ATGTTAACTACACTTATTGTGGTGAGCATTTCA CAATACACATAAACATCAAATCATTATGTTGTACACCTGAAACTAATAGAATGT-TATATGTCAATTTTATCT-CAA--- TAAAT------------AAGGTG----------------AT---GGTTCTA-----GCTCTTGACCTTTTTG----TATC AAGTGTTAGAAAACAGGCATAGTCAAT >Tursiops_truncatus TAGACTCAAACATTTTCTATCTTTTGAGACTAGTTTGG---TTGGAGATGATC---AAAA---GGCTATGAAAAAAGAAG -------------------AAGTCCTACCATTTGCAAC-AATATGAATGGACCTTAAGGGCATTATGCTGAATGAAGTAA GTCAGACAAGAAA----AAGTACCATATGTTCTCACTTTTATGTGCAATCTAAAAGGAAAACAGAAACAACA----AAAC TAACCAAAGTCATATATACAGAGAACAG-ATTGGTGGTTGCCAGGGG--GAGGG-------------------------- ----------GTGGGTGAAATAGGTGGAGG-GGGTCAAAAGGTACAAACTTCCAGTTATGAA--ATACATAAGTCTTGGG GATGT-ATGTATGGCATGGTGACTATAGTT-AATATACTATATTGTATATGTG-AAGTTGCTGAAAGAGTAGATCTTAAA AGTTCTCATCACAAGAA-AAAAATCGTAACTATGTAAGGTGACGG--ATGTAAACTAGACTTTCTGTGGTGATCATTTCA CAATACACACAAATATCGAATCATTATGTTGTACACCTGAAAC--ATATAATGT-TATATGTCAATTATTTATGCAG--- TAAA-------------AAAAGACAATGG---ACGTAGAAA---TGTTCTA-----CCTCTTGATCTTTAAG----TATC AATTGTTAGAAAACAGTCATAGTCAAC >Myotis_myotis TTGACTTAAACATTTTCTATTTTTTGAGACTAGCTTGG---CTAGAAATTATC---AACA---GGCAATGGAAAAAGAAG ------------------GAAGTCCTGCCATTTGTGAC-AACATAGATGAACCTTGAGGGCATTATGTTAAGTGAACTAA GTTAGATAGAGAAAGACGAATGCTGTATGATCT----TATATGTGGAATCTAACA-CAAAACAAAAC---------AAAA GAACTAACTTCATAGATACAGAGAACAT-ACTGGTGGTTGTTAGAGGTAGGGTGTGTGTGTGTGTTGTGTGCTGTGTGTG TTTGCTGTGTGTGTGAGAAATGGGTGAAGG-GGGTCAAAAGGTACAAACTTCCAATTATAAA--ATAAATAAGTTCTGGA GATGTAATGTACAGCATGGTGGTTACAGTT---AATATTTTATTGTATGTTTGCAAATTGCTAAGAGAG---ATCTTAAA AGTTGTCATCACATGAA-AAAAATTGTAAATTTGT--GGTGATAG--ATGTTAACTAGACTTATTGTGGTGATCATTTTA CAATATACA--ACTATCAAATCATTATGTTGCACTTCTGAAATTAAT---------ATATGTTCATTGTATTT-GAA--- TAAAA------------AGAAAACAATGG---AAATAGAAA---CTTTCTA-----TCACTTTACCTTTATG----TATA ACATGTTGGAAAATAAATATGGTCAAT >Rousettus_aegyptiacus TTGACTCAAATATTTTCTATTTTTTGAGACTAGCTTGG---CTAGAAATGATC---AAAA---GGCAATGAAAAAAGAAG ------------------AAAGTCGTGCCATTTGTGAC-AACATGGATGGGCCTTGAGGGCATTATGCTAAGTGAAATAA GTTAGGTAGAAAAAGACAAAAACTGTATGATCTCACTTATATGTGGAATCTATAACAAAAACAAAAACGGA-----AAAA CAACCCAACTCATAGATACAGAAAACAG-GTTGAGGGTTGCTAGAGGAAGGGTAT-------------------TAGGGG TAGGGCATGTGTGTGGCAAAGTGGTTGAAAATGGTCAAAAGGTGCAAACTTCCAGTGATAAA--ATAAATAAGTTATAGG GATGTAATCTACAGCATGGTGTCTATAGTTATTAATACCATATTGTACATTTGAAATTTGCTAAGAGAGTCAATCTTAAA AGTTGTCATTACATAAAGAAAATTTATATCTATGCATGGTGATGA--ATGTTAACTTGACTTATTGTG-TGATCATTTTG CAATATATACAAATATTGAATCATTGTGTTGTACTCCTGAAACTAATGT--------TATGTCGATTCTATCT-CAG--- TAAAA------------AGAAGGCAATGT---AAATAGAAA---CTTTCTA-----CCTCTTTACCTTTATA----TATA ACGTGTTAGAAAACAAATGTAGTCAGT >Condylura_cristata ATGACTCAAATATTTT-TGTTTTGTAAGACAAACAAGGTGACTAAGAATGATG---AGAGAGA-GAGAGAGAGAGAGAAG ------------------GAAATACTGTCATTTGAGGCAAAAAGGAATGGAACTTGAGGGTACCATGCTAAGTGAAAT-A GTAATTCAAAAA-------------CATGATTTCAGATA----------------------------------------- -----------------ACAGAGAATAG---------------------AAGGA-------------------------- -------------GAAGAAATGGGTGAGAG-GGATCAAAATGTACAAAATTCCAGTTACATA---TAAATTAGCGTTGGG GATGTGATACACAACATGGTGACTCTAGTCTCAAATAC-----TGTATATTTGAAAGTTGCTAAGGAATAAAATCTTAAC TATTCTTTCTAT--------------------TGT---GTGTTGG--ATGGTAG-----CTTATTATAATTATCATTTCA CAATATATATTTTTATTAAGTCA-TATGTTGTACACATAAAATTAATATAATGTATATATACCCATTATATCA-CAAAAC TAAAGA-----------AAAGGGTAATGGAAAAGGTAGAAA---TGCTCTA-----GCTCTTCACCTTTATG----GATA AAGTGTTAGAAAATAG--GCAATCAAT >Uropsilus_gracilis GTGACTCAAAC-----CTGATTTGTATGACTAGGTGA----CCAGGAATGATT---AAAAAAATGCAATGAAAAAAGAAG ------------------GGAAATTTGTCATTTGAGAC-AAAATGAATGGA--TTTGAGGTAGTATGCTAAGTGAAATAA GTCAGATATAGAAAGACAACTACTACATGATTTCACTTATATGTAATATCTGACA---ATACAAAAATCAAA----AATG ------AACTCACAGATA-ACAGAACAG---------------------AAGGA-------------------------- ----------ATATACAAACT-------------TCAAAACCCACAAACTTCCAGTTAGAAA---TAAATATGCCTTGGG GATATGATGCACAACATGGAGACTGTATTTTAAAATA-----TTGTGTATC--AAATTAACTAAGAAAGAAAATCTTTAA TGTTCATGTTATGTTT----------------------GTGATGG--ATGCTAA-----CTTATTGTGATGATCATTTGA TAATACTTACCTTTATCAAGTC--TATATTGTATAGCCAAAACTAGTAATA-----ATGTATTCATTATATCT-TAATAC TAGA-------------AAAAGATCATGCAA---GTAGAAA---TTTTCTA-----CCTCGTCACCTTTAAG----GATA GAGTGTTAGAAAATAA--GCAATCAAT >Canis_familiaris TCAACTCAAACATTTTCTATTTTT-GAGACTAGTTGGG---CTAAAGATGGTC---A-AA---GGCAATGCAAGTGGAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TGTGGTAGAATGTTTCGTAATCTTTCTG----TATA AAGTGTTAGAAAA------TAGTCAAT >Felis_catus TTGACTCAAACATTTTCTATTTTT--AGATTGGTTGGG---CTAACGATGACC---AAAA---GGCAATGGAAGTAGAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TATTCTA-----CCTCTTTATCTTTGTG----TATA AAGTG-------AGAGGCATGGTGCAT >Manis_pentadactyla TTGACTCAAACATTTTCTATTTTTCGACATTAGTTGGG---CTAGAGATAATC---AGAA---GACAGTGGAAGTAGAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TATTCAGT----TTTTTTTACTTTTATGTATATATA AAGTATTAGAAGATAGGCACAGTTAGT >Equus_caballus TCAACTCAAATATTTTCTATTTCTTGAGCCTAGCTGGG---CTAGACTTGATC---ATAA---GGCAATGGACGTAAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------CTTTCCA-----TCTCTTTAACTTTATG----GATA AAGTGTTAAAAAATAGGTATAATCAAC >Ceratotherium_simum TCGACTGAAACATTTTTTATTTTTTGAGACTAGGTGGG---CTAGACATGATC---ATAA---GGCAACAAAAGTAACAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------CTTTCTA-----CCTCTTTACCTTTATG----GATG AAGTGTTAGGAAATAGGCATAGTCAAT >Homo_sapiens TTGACTTAAATATTTTCTATTTTTTGGAACTTGCCGGG---CTAGAGATGATC---AAAT---GGCAATGGAAGTAGAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------CTTTCTA-----CCTCTTTATCTTTATG----GGTA GAGTGTTAGAAAATGGGTGTAGTCAAT Bat102_LINE >L1MA9_3END -------------------------------------------------------------------------------- ------------ACACAAAAAAATGGTAACTATGTG-AGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTC ---ACAATGTATACGTATATCAAAACATCACGTTGTACACC-TTAAATATATACAATTTTTATTTGTCAATTATACCTCA ATAAAGCTGGAAAAA----------------------------------------------------------------- ---------------------------------- >Canis_familiaris GTCCGGTTCATCTCTGCCTCAGTGGCAGCATTAAATTCAGCACCTAGTCATGGCCCAGAACTCATCTGG---ATAAACAA CGAA--TGA---------TTTAAT--TATCTCTATG-AGGTGGTGG--GTGTCAATTACACTTATCGTGGTCATCATTTC ---ACAA--TATACAGAAGTCAGACCTTTACGCCATATCCT-TGGAACTCATACAG-TGA--TGTGCTGATTATATCCCA GTAAAAGCGGGGAAACAAAACCCCCAAAACAAAATAT----AACAAAAAG------GA---ATGAACACAAGTGGGGTA- --AAGACTAGCTCTTCTTCAGCGCTTGGCTCCCA >Felis_catus GTCCAGTTCG-----------------------------GCACCTAGTAACGACCCAGAACTCATGTGG---ATAAACAA CGAG--TGA---------CTTCAT-GTATCTATATG-AGATGACAG--ATGTCAACTAAACTTACTGTAGTGATCATTTC ---ACAA--TATACCCAAGTCAGACCTTTATGCTGGATGCT-TGAAACTCATACAG-TGAGGTATGTCAATTATAGCTCA ATAAAACTGGGAAAAC---ACCCCCAAAACAAAACAC----AATAAAAAT-GAA-TTA---ATGAGCACAAGTAGGGTG- --AAGACTAGCTCTTCTTTAGCTCTTGGCTCCCA >Manis_javanica GTCTGATTTATCTCCGCCTCTGCTGCAGTGTTAAATTCAGCACCTAGTAATCACCCAGAAAGCATTTGG---ATAAACAG TGAA--TGA---------TTTATT-GTATCTGTATGAAAATGATGG--ATGGTAACTAAATTTATCATGGCAATCATTTC ---ACAA--TATGTGTAAGTCTAGCCCTTATGCTGGTTTTTAAAAAACTCATACAG-GAATGCATGTCAACTATATCTCA ATAAAACTAGGAAAAGAAACCCCCAAAAAACGAAAAG----AAAAAAACACAGATTGA---AGGGACACAAGTGGGATG- --AAGAGCAGCCCTTCTTTAGCTCTTGGCTCTCG >Sus_scrofa GTCCAGTTTCTCTTTGCCACAGCTGCTGCATTAAATTCAGCACTTAGTAATCACCCAGAAGACATCTGG---ATAAATAA AAAAAGTGA---------ATTGTT-GTATCTATATG-AGATGATGG--------------------GTGGTAACCATTTC AATACAA-ATATATGCAAGTCATACCTTT-------ACACT-TGAAACTCCTGCAG-GGAGGCATGTCAGTTTTATCTTG TTAAAACTAGAATACAAAACAAACACCAACACCCCTCC---CCCAACAAT-GAA-TGA---ATGCACAC-AGTGG-AT-- --AAGACCAGCTGTCCTTTAGCTCCTGGCTCCAG >Bos_taurus GTCCGGTTCATCTTTGCCTCTGCTGCAGTATTGAATCCAGCCCCTAGTAATTGC------------TGG---ATAAACAA TGAA--TGA---------TTTATT-GTATCTATAGG-AGATGATGA--GTGTTAACTAAAC------------TCATTTC ---ACAA----TATTTTTGTCAAACCTTTATGCTGGACTCT-TGAAACTTACACAG-TGAGATACGTCGATTACATCTCA ATTTAACTGGAAAA---------CAAAGATAAAGCCCC---TCAAAGGAT-GGA-TGC---ATGAACACAAGTGGGATA- --A--ACTAGCTCTTCTTTGGTTCTCGGCTCCCA >Myotis_myotis GTCCCATTCACCTTTGCCTCCGCGGCAGCAT--------------------CACCACGCAAACATTTGG---GCAAACAA TAAA--TGA---------CTTACT-GTTTCTCTGTG-AGATAATGA--ATAGTCACTGAACTTGTGGTGGTGATCCTTTC ---ACAG--TATATGTAAGTCAAAGCTTTATGCTGGACACT-TGAAACTCAAACAG-TTATGAATGTCAATTATACCTTA ATAAAACTGGAAAAAA---CTCCCCCAAACAG---------AAACAGAAC-AGC-T-A---ATGAAGAT-AGTGGGAGA- --AAGATGAACTCTTCCTTCACTCTCAGCTCCCA >Rousettus_aegyptiacus GTCTGATTCTTCTTTGCCTCAGTGGCAGCATTAGATTCAGCACATAGTAGTCACCTAGAAAACATCTGG---AT--ACAC TGGA--TGG---------TTTACT-GTATCTGTATA-AGATGATGG--GTATTAACTAAACTTATGGTGGTAATCACTTC ---ACAA--TGCACGTAAGTCGAATCTTTATGCTATATACT-TAAAACTCATACGA-TGATGTATGTCAGTTGCATTTTG ATAAAACTGGGAAAA----ATCCCTAACCCCAAA-------CCCAAAAAC-AAA-ACT---ATGAACACAAGTGGGATA- --AAGACCGGCTCTTCTTCAGCTCTTGGGTCCCA >Equus_caballus GTCTGATTCATCTTTACCTCAGCTGCAGCATTG-----------TGGTAATCACCCAGAAAACATCTGG----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------ATAAACAAT-GAA-TGA---GGGAACAC-AGTCAGATA- --AAGACCAGCTCTTCTTCAGCTCTTGGCTCCCC >Ceratotherium_simum GTCTGATTCATCTTTGCCTCAGCTGCAGCATTGAATTCAGCACCTAGTAATCACCCAGAAAACATCTGG----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------ATAAATAAT-GAA-TGA---GTGAACAC-AGTGGGATA- --AAGACCAGCTCCTCTTCAGCTCTTGGCTCCCC >Condylura_cristata GTTCATTGCATCTTTGCCTCAGCTGTGGCATTAAATCC-GCACTTTGTAACCACCCAGAAAGCCTGTGG----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------ATAAACAAT-GGG-TGA---GTG-ACCT-GGTAGGACA- --GAAACTAACTCTTC---AGCTCCTGGCTGCAG >Uropsilus_gracilis GTTCGATGCATCTTTACCTCAGCTGCAACATTAAATCCTACACCTAGTAGTCACCCA-AAAGCCTCTGG----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------ATAAACAGT-GAA-TGA---ATG-----ACATGGGATA- --CACACTAGCTCTTCCTCACCTCTTGGCTCCAG >Homo_sapiens GTTCAATTTATCTTTGCCTCAGCTGCAGCACTA-ATTCAGTAC----TAAGCGTCCAGAGAATGTTTGG----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------ATAAACAAT-TAG-CGA---A-GAACTCAACCAAGATAA AGAAGAATAGTTCTTCTT-AGCTATTGGCTCCAG Bat109_LINE >L1MA9_3END -------------------------------------------------------------------------------- -TTTTTCCAGCTTTATTGAGGTATAAT------TGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTT GATATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCAC---------------- ----------------------------------------------------------------------------- >Sus_scrofa AAAGAATTGGAAAGTATAGAT--TGTCTCACCA-TCTCC----TATATACTTAATACTT----TTTACTGATTTATTT-- ----------------AGAG--ACAGT------TGACA----GACATTATATTAGTTTCAGGTGTATAATATAATGATTA AGTATTTGTATATATTGTAAAATGATC---ACAATAAGACTAGTTAACAT--CCAGA----------ATTAC--TTATTT ATTT---AATA-AAGATTTT----TATAGCTC-TGGTTTGTGCCAGGCACTGTTCT---ACCTTTACAAATACAAAC >Bos_taurus AAAGAACTAGAAAGCATGGATCATGTATCACCA-TCTGT----TATACACTTAACATGTA---TCAAT----TTATTT-- ----------------AGAGGTAACATATGATATGATAT---GATATGATATTAGTTTCAGGTATACAACATAATGATTT GATGTTTGTGTATTTTGCAAAATGATCACCACAATAAGTCTAGTTAACAT---CA---------------ACAATTACTT ATTT---AACA-AAGACTTT----TACATCCCCT-----GTGCCAGGCTCTATTCT---ACCTTTACAAATAAGAAC >Equus_caballus AAAGAACTAGAAAGCATAGATCATGTATCATAT-TCTATT--ATATATACTTAATACTTA---TTTATTCATTTATAT-- ----------------CAAGGTATAAT------TGACATAT-AACGTGATTTTAGTTTCAGGTATACAACATAATAATTG GATATTTGCATATATGGCAAAAAGATCACCACAATAAGTCTAATTAACAT--CCAGA-----------TTACC-TTATTT ATTT---AGCA-GAGACTTT----CATAGCC-TTGGTATGTACTGGGCACTGTTCC---GCCTATACAATTATGAAG >Ceratotherium_simum AAAGAACGAGAAAGCATAGATCATGTATCACCA-TCTAAT--ATATATACATAATATTTA---TTTATCCATTTATAT-- ----------------TGAGGTATAAT------TGACATAT-AACATGATATTAGTTTCAGGTGTTCAACATAATAATTG GATATTTGTATAGATTGCAAAATTATCACCACAATAAGTCTAATTAACAA--CCAGA----------TTCAC--TTATTT ATTT---AACA-AAGACTTT----CATAGCCCTTGGTATGTACCAGGCACTGTTCC---ACCCTTACAAATATGAAC >Myotis_myotis AAAGAACTAGAAAGCATTAATCATGTATCATCTATTTAT----TATATACTTAATATTTA---TTTATTTACTTATTT-- ----------------AGGAGTATAAT------TGACATAT-AACATTATATTAGTTTCAGATGTACAACCTAGTGATTC AAAACTTGTACATACCGAGAAATGATCACCACAATAAGTCTAGTTAACAT---TGTA----------TTTAC--TTATTT ATTT---AACA-AAGACATT----TATAGCTCGTGTTATGTGCCAGACACAGTTTTAAGAATTTTACATATATGAAC >Rousettus_aegyptiacus AAAGAATTAGAAAGAGTGGATCATGTATCACCA-CCTATGTAGTATATATTTAATATTTA---TTTAT----TTATTT-- ----------------AGAAGTATAAT------TGACATAT-AACATTATATTAGTTTCAGGTGTACAACATAGTGATTC AGTATTGGTATATATTGTGATATGATCACCACGATGAATCTAGTTGGCAT---CAAA----------TTTAC--TTAGTT ACTT---AACAAACCACATT----TATAGCT-TTGTTATCCACCAGGTA-----CTAAAAACTTTACAAACATGAAC >Canis_familiaris AAAGTACTAGAAAGCATAGGACACGGATCACA--TCTAT----TATATATTTAATATTTA---CTTATTTATTTA-AC-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------GATA-AGGATCCTACGATAGGGTCCAAGGATATAGCCAGGCACTGTTCTAAGAACTTTACAAATATGAAC >Felis_catus AAAGTACCAGAACGCATAGATCATGCATCGCTC-TCTCT----TATATACTTAATATTTC---TTTACTTATTTATTT-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------AACA-AAGACTTT----TATAGCCCTTAGTGTGTGCCAGGCACTGTTCTAAGAACTTTATAAATATGAAC >Manis_pentadactyla AAAGACCTACAAAGGACAGATCATGTATTACAA-TCTAT----AATGTATTTACTACTGA---TTTATTTATTTATTT-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------AACA-AAGACTTT----TATAGCCCTTGCTACGTGCCAGGCAGAGTTCTAAGAATTTTCCAAATACGAAC >Condylura_cristata AAAGAACTAGAAAGTATAGATTATGTATCACCG-TAGAC----TATATACTTACTG--TA---TTTATTTATTTACTT-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------CACA-AAGAAATG----TATATCCCTT-----------GGTACTATTCTAAGAACTTTATAAATATGAGC >Solenodon_paradoxus AAAGAATTAGAAAATATTGATCATGTACTACCA-TCTAT----TATACACTTAAAGTTTA---TTGACATATTTACTT-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------AACC-AAGACTTT------GAGTCATTCACATGTACCAGGCACTGTTCTAAGAACTTTACAAATAAGAAC >Cavia_porcellus GAAGAATGAGAAAGCAT-----ATATATTACTA-TCTGT----TATATACTTACAATCTA---TTCA--------CTT-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------AACA-AA-ACTATA---CACAGTCCAAGTTGTATGCCAGGCACTGTCCTAAGAGTTTTATGAATAAAAAT Bat113_LINE >L1MA9_3END ---------------------------------------------------------------------------GTGAT GGATATGTTAATTAGCTTGATTGTGGTAA---TCATTTCACA--ATGTATACGTATATCA-------------------- ----AAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA---- -------------------------------------------------------------------------------- ------------------------------------------------- >Canis_familiaris TAAGGAG-TTGCTCAAACTGGAAGACAGAGTTGGAAAAAAGAACAAAAGAGC---AAGAGAAGTGAGCGCGG-------- -----GGCCTACTG---------TGGTGA---ACGTCT-GCA------------ATAGTG-------------------- ----AATCATTACATTGTACCCCTGAAACTGGCGTGATGT---CATGTCAACTATACTTGAAGAAGAAAAAA-------A GGAAGAGGAGGAGGAAGGGGGGGGGGAAGGAG---AAGAAGAGTTAGTG-CGG---TGCCGAATGGGGCAGGGCTC-GCA CTCACTGTCAGGCATTTGGAATC-CTCCGG-CAGGAAGGGTGACGTCAA >Felis_catus TAAGAAACTT-------TGAGAATACAGAGTTGGAATAAAGAACAACAGAGT---AAGAAGAGCTAGCATGG-------- -----GATTTATTG---------TGGTGA---ACATTTTATAAGATATACACAAAGGCTG-------------------- ----AATCATTACATTGTACACCTGAAACTGGTGTAATGT---TATATCAGCTACGCCTGAAGAAGGCAGAGCTCTGACT GGAGGGGGAGGAGGAGGAGGAGAGAAAG-------AGGATGANNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Phataginus_tricuspis TGAGAAGTTTACCCAAACTGGGATAATGAGTTGGAATAAAG----AAAGAAT---AAGATAAGTTAGCATGA-------- -----GATTTATTA---------TGGTGATATACATTT-GTA------------TAAATGTTTGTATAATATATATAAAC ATCAAATCATTACATTGTACACCTAAAACTAATATAATGT---TATGTCACTTACACCTCAATTAAAAAAAC-------C T---------------------------------------CAGTTATTG-TGG---TGCCAGACAGGGCAAGGCCCTGCA TGCAGTGCCAGGGGTTTGGAATTGATCCTG-TAGGCATGGGGGAGTCAA >Sus_scrofa TAAGAGGTTTACTCAAACCAAAACAAAGAGTTGGAATAAAG----ACTGAAT---AACAAGAGCTACCATGG-------- -----GATTTATAG---------AGGTGA---TCATTTTGCA--ATATATACAAATAGCA-------------------- ----AATCGTTAAGTTGTACACCTGAAACTAAGATAA------TATATCAATTATACCTCAATAAAAAGGAA------AA GGAGAAAAAAAAAAAAAA-----------------AGGCAGAGTTAG-G-TGG---TGCCAAAAAGGGCAGGGCCCTGTG TTCAGGGCCAGGGGTTTGGAAGT-ATCCAA-------TGGTGTAGGCCA >Bos_taurus TGAACAGTTTCCTCAGACTGGGACAAAGAGGTGGAATAAAGGAAGACAGATT---AAGAAGAGTTATCGTGG-------- -----GATTTATTTGTTTGTTGTTGGTGA---TCATTTTGCA--ATGTATACAAATACCA-------------------- ----AATCATTAAGTTGTACACCTGAATCTAAGGTAATGT---TGTATCAATTATACCTCAATTAAAACACACACACACA CACACACACACACACACACA---------------CACACAAAGCAATG-CGG---TGTCAAACAGGGCAGGACCCTGCA TTCAAGGTTAGGGATTTGAAACACATCTAG-GAGGGACAGTGCGGTTGA >Myotis_myotis TGGGAATTTTACTCAAACTGAGTCAAAGAGTTGGAATAAAG----AAAAAAT---AAGA---GTCAGTGTAA-------- -----TACTTCTTA---------TGGTGA---TCATTTTGCA--ATATATACAGATACCG-------------------- ----AATCCTTACATTGTACACCTGAAACTAATATAATGT---TGTGTTAATTACACCTCAATTAAAAAAA--------- -----------------------------------AAAAAAGGTTAGTG-TGC---TGCCAAATGGGGCAGGGACCTGTA TTAGGTGTCAGGGGTTTGGAATTAACCCA--TAAGGATAGTGAAGTCAA >Rousettus_aegyptiacus TGAAAAGTTTACTCAAACTGGATCAAGAACTTGGAATTAAG----AAGGGAT---AAGAAGTGCCAGTGTGG-------- -----GACTTCTT------------GTGA---TCATTTTGCA--GTATATACAAATATTG-------------------- ----AAACATTATACTGTATACCTGAAACTAAAA-----------TGTCTATTACACCTCAATTAAAAAAAAAA------ -----------------------------------AAAAAGAATTATTATCAT---GGTCAAATGTGGCAGGGCCCAGCA TTCGGTGCCAGGGATTTGGAATTTATCCCATTAAGTATGGTAAAATCAG >Equus_caballus TGAGAAGTTTACTCAAACTAGAACAAAGAGTTGGAATAAAGAAAGATAGAAT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------AAGAAGAGTTAGCC-CAG---TGCCAAACTGGGGGGCACCCTGCA TGCAGTGTCAGGGGTCTGGAATTTATCTCA-CAGGAATAGAGAAGTCAA >Ceratotherium_simum TGAGAAGTTTACCCAAACTAGAACAAAGAGTTGCAATAAAG----ATAGAAT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------AAGAAGAGTTAGCA-TGG---TGCCAAATGGGGTAGGGCCCTGCA TTCAGTGTCAGGGGTTTGGAATTTATCCCA-CAGGAGTAGCAAAGTCAA >Condylura_cristata TGAGACGTTTATGCAAGCTGGGTCA-AGAGTTAAAATGAAGACAGATAAAAT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------AAGAAGACTCAGTA-CAG---GACCAGTTG--------------- -------------------------------TAGAAATAGCGAAGTGAC >Erinaceus_europaeus TGAGACAGGTACTCAAACTAGGACCAAAATCGGGAATGTGGAAC---GGTAA---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------AAGAAGAGTCAGTG-TGG---TGGGG------------------- --CAGGGCCAGAGCTTTGGGATTTCTCCTT--AGCAATAGTCAAGCCAA >Homo_sapiens TGTGAAGTTTACTCGAACTGGGACAAAGAGTTGGAATGAAGAA----AGAAT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------AAGAGGAGTTAGTG-CAG---TGCCAAATGGTGCTGGGCCCTGCA TTCAATATCAGGGGTTTGGAATTTATACTG-AAGGAATAGGGAAGTCAA Bat117_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------TTTTTCCAGCTTTATTGAGGTATAATTGACA AATAAAAATTGTATAT---------------------------------------ATTTAAGGTGTACAACGTGATGTTT TGATATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTACCATTTTT TTGTGTGTGGT--------------------------------------------------------------------- ------------- >Canis_familiaris NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNNNN NNNNN----------------------NNN-------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------TTATTTTTAAATGTTTTT----------------ATTGAGATGTAATTGGCA AATAATATGTCA-------------------------------------------GTTTCAG--GTACAGCATG---ATT CAATAAATGTATATATTGTGAAATGATCA---CAATAAGTCTAGATAAC--ATCCATCACCACACAAAGTTACAA----- --------------TT---CTTTTAATTTTT---AAAATTTGTGCAGAATGATA---TAATAGCAATCTTCC---CACCC ---TGGAAAGATA >Felis_catus TCTGTGATAAA-TACTTCCGCGGTCTC-TTGGTTGAGATGTTCCTCAATGCATTACTTT----TTCTCCTTAAAGTGTTT AAAAT----------------------TTT---AAACAATTTTGGGGCGCCAGGGAGCCTCAGTCTAAGGTTCAGCATCT GACTCTTGATTTCGGCTCAGGTCACGATCTCACGGTTTGTGGGTTCGAGCCCCACACTGGGTTCTGTGCTGACAGGGCAG AGGCTGCTTGGGATTCTGTCTCCCTCTCTCTCTCCCCATTACAAAAGTAAATAAATCAATACATTCTAAAGTAAATAAAT AAATAAATATATAATTTTTAAATGGCTTAAAAACTTAAAACTTTTT----------------GTCGAGACATAATTGACA TATAATATTATATTA----------------------------------------GTTTCAGGTGTACAGCATG---ATT CAATAAATATATATATTGTGAAATGATCACTGCAATGGGTCTAGGTAAC--ATCTATTACCACAGACAGTTATAAC---- --------------TTTTTTTTTTTACTTTT---TAAATTTGTGCAGAATGATA---CGATAGCAATCCTCCTGGCCCCC ---CAGAACAAAA >Manis_pentadactyla NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTTGAAAGGTGCC---------------------CTCCTT--------- ---------------------------TAT-------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------GAAAAAAATTTTTTTTTTC----------------ATTGAGATATAATTGATG --TAATATTATATTA----------------------------------------GTTTCAGGAATACAGCATAATGATT TAATGCAAGTATACATTGTAAAGTGATCACCACAATAAATCTAGTTAAC--ATTCATCACCACGCATAGTGACAGT---- --------------TT--TTTTTTAATTTTT---GAAATTTGTGCAGAATGATA---CAATTGCTATCTTCCT-GCCCCC ---CGGAATGAAA >Equus_caballus TCTGTGATAAA-CACTTTGGCACACAT----ATTGGGATGTGCCTCACTATTGTTTT------TCCCCCTTAAAGTGTTC CCTCC----------------------TTT-------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------AAAAAAAAAAATT----------------ATTGAGATATAACTGACA TATGAAATCATATTA----------------------------------------GTTTCAAGTGTACAGCATA---ATT TGACATCTGTCTATGTTGCAAAATGATCACCACAATAAGTCTAGTTAAC--ATCCATCACCACAC--GGTTACAAA---- --------------TT--TTTCTTA--TGTT---AAAATTTGTGCAGAATGATA---TAATAGCCATCTTCCT-GTTTCT ---TGGAATGAAA >Ceratotherium_simum TCTGCGATAAA-CCCTTGGGCAGTCTCTTTGGTTGGGATGTG-TTCACTACTTTTTTTT----TTTCCCTTAAAGTGTTC CTT------------------------TTT-------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------AAAAAGAAATTTTT----------------ATCGAGATATAACTGACA TATAACATTATATTGTTATATGTCATTATATTGTTTCATTGTACAGCATTATATTGTTTCAAGTGTACGGCACAAGGATT TGATATATGTATATAGTGTGAAATGACCACCACAAT--GTCTAGTTAAC--ATCCATCACCACAC--AGTTACAAA---- --------------TT---TTTTTTATTTTT---AAAATTTGTGCAGAGTGATA---TAATAGCCATCTTCCT-GCCCCT ---TGGAATGAAA >Myotis_myotis NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTTGCGATGTGCCTCACTGCTTCTC-------TTTTCCTTTAAGTTACC CTCC-----------------------TCT-------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------AAAAATTAAAAATTT----------------ATTGAAATATAACTGACA --TAATGTAATCTTA----------------------------------------GTTTCAGGTGTACAGCATG------ ------ATGTATATAAGATGAAATGATCACCACACAGAGTACAAATTAT--TT--------------------------- --------------TT--TATTTTTATTTTA---AAAATTTGTGCAGAATGAAG---TAACAGCTATCTTCCT-GCACCC ---TGGAATGAAA >Rousettus_aegyptiacus TCTATGATAAG-TACTTTGGCAGCCTCTTTGGTTGGGATGTGCTTCACTACATTTTTTTCCCCCTCCCCTTAAATTCTTC CTTAC----------------------TTT-------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------AAATTATTTTTTAAAAATTTT----------------ATTGAGCTATAATTAACA CAT---ATTATATTA----------------------------------------GTGTCAT-TATACAATACAATGATT TATTA--TGTATATATTGTGAAATAACCA---CAATATGTCTAGTTAAC--ATCCATCACCACAC--AGCTACAAA---- --------------TT------ACTATTTTT---TA--TTTGTAGAGAATGATA---TAATAGCCATCTCCCT-GCAACC ---TAAAATGAAA >Sus_scrofa TCCATGATAAA-CACTTTGGCAGTCTC--TGGTTG-GATGTAACTCATTACTTTTT-------TTTACCTTAAAGTGTTT CCCAC-----------------------TT-------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------TTTTGTTTTCAATTTTT---------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------AAAATTTGTGTAGAATGATATACTAATGGCCATTTTCCA-ATTCCC ----AGAATGAAA >Tursiops_truncatus TCTATGATAAAGCATTTTGGTAGTCTCTTAGGTTGCGAT-TGACTCATTACTTTAT-------TTTACCTTAAAGTGATC GCTCC----------------------TTT-------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------TT-TGTTTTCAATTTTT---------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------AAAATTTGGCAAGAATGATATACTAATAACCATCTTCCA-GCACCC ----AGAGTGAAA >Condylura_cristata TCTATGACTGACAACT--GGCAATATCTTCAGAGGGGATAGGTTTCATTACTATTT-------TCCCCCTTAAAGTTGCT T--------------------------GCT-------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------TC--TTTTTTAATGTTT---------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------AAAATGTGTGCTGAATGATA---TAATTATCATCAGCTTGTCTCAT ---TTTAATGAAG >Sorex_araneus TCCTTGTCAACCTTTT-----AGTGTCTTTAGTCAAGATGTACATCACTCCTT----------CCCCCCTTACTCTGTTC CCTCCCCTTCAAAATTAATTAATTAATTAA-------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------TTAATTAATTAAATTTA---------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------ATGCTTCTGGCAGAATACTT---TTATAATCATATCCCTGTCCCTT GAATAAAATAACA >Homo_sapiens TTTCTGATGAA-------------CACCTTGGTTGAGATGCGCCTCATTACTTTTA-------TTTCCCTGAAAGTATTC CTTA-----------------------CCT-------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------TT--TTTGTTAACTTTT---------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------AAAATTTGTGGTAAATGATA---GAATAGTCATTGTTCT-GTCTCC ---CAGAATGAAA Bat120_LINE >L1MA9_3END -------------------------------------------------------------------------------- ---------------TTTTTCCAGCTTTATT--------------------GAGGTATAATTGACAAATAAAAATTGTAT ATATTTAAGGTGTACAACGTGATGTTTTGATATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATAT CCATCACC-----------TCACATAGTTAC-----CATTTTTTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTA GCAAATTTCAAGTATA--CAATACAG---TATTATTAACTATAGTCACCATGCTGTACATTAGATCT------------- ------------------------------------------------------------------ >Canis_familiaris TGGTCCCCTCGAGAACCTTCCT------------------------CTTCA-GAGAAT-GTTTTAGTTACACTTCCA--- GGAACAACTGTA-----------TTATTACT-----------------------ATGTAATTGGCATAG-AACATAACAT TAGTTTCAGGTATACAACATAATGATTTGATATTTGTATATATTGCAAGAGGATTGCCACAATAAGTCTAGTTA--ATAT CCATTACCA----------ATACATAGTTACAAAAAAATTCTTTTTCTTGTGATGAGAAGTTCTAAGATCTATTCTCTTA GCGACTTTCAAATGTA--CCATACAGTGTTATTACTAACTCTAGTCACCATGCTGTACA-----------TGAACAGCTA TT---GAT-TTACCATTTAA--TTTCTTAGGATCCAGTT-GGACTTTACCTT-------TTTTAAG >Felis_catus AGGTGCCCTCATGAACCCTCCC------------------------CATCA-GGGGAT-GTTTTAGTTCCACTTCCC--- ACAACAACTGTT-----------TTTTTGTTTTTTTTTGTTTTTTTAAGTTGAGGTGCAGTTGACATAC----ATTACAT CAGTTTCAGGTGTACAACATAATGATTTTATATTTATACATATTGCAGGATTATGGCCACTATAAGTCTAGTTA--ATAT CTATTACCATACATAGTTCATACATAGTTAC--AAAAATTTTTTTTCTTGTGTTGAGGAGGTCTAAGATCTATTCTCTTA GGAACTTTCAGATATAACAAATACAG---TGTTACGAACTCTAGTCACCATGCTGTACA-----------GGA--AACTA TT---GAT-TTTCCATTTAG--TTCCTTAGGCT-CAATT-GGATTTCACCATT------TTTAAAG >Manis_pentadactyla TAGTCACTTCCAAAGCCCTCCA------------------------CCTCA-GGGAAT-GTTTCTGTTGCACTTGAC--- TGAGCA-TTGTT-----------TTTGTATT--------------------GAGGTACACTTTACATAC-AACATTAC-- -----------GTACAACATAATGATTTGGTATTTGTATGTATTGCAAAATGATCACCACAATAAGTCTAGTTA--ACAC ACATCACC-----------ATACACAGTTACCCCAAAA--TATTTTCATGTGATGGAGACTTTGAAGACCTATTCTCGTA GCGACTTTCAAATATA--CAATATAG---TCTTATTAACTGTCATCACCATGCTGTACA-----------TAAACAACTC TT---GAC-TTTCCATTTAA--TGTCTTTGGCTCCAATT-AGATTTCATATTTG-----TTTTTAA >Equus_caballus TGGTCCCCTCCAGAGTCCTCCT------------------------CATCA-GAGGAT-GTTTTGGTTATACTTCGT--- TGAACAACTACT---TTATTTTTTTTTTACT--------------------GAGATATAATTGACATAC-AACATTACAT TAGTTTCAGGTGTATAACATAATGATTTGATATTT-TATATATTGCAAAATGATCACCACAAGAAGTCTAGTTA--ACAT CGGTCACC-----------ATACATAGTTAC---AAAAATTTTTTTCTTGTTATGAGAACTTTTAAGATCTGTTCTTTTA GAAACTTTCAAATATG--CAATACAG---TATTATTAGCTATGGTCACTATACCGTACA-----------TGAACAACTA TT---GAT-TTTCCATTTAA--TTTCTTTGGCTCCAATT-GAATTTTACATTTG-----TTTTTAG >Tapirus_indicus TGGTCCCCTCAAGAGCCCTCCT------------------------CATCA-GAAGAT-GGTTTGGTTGTACTTCAC--- TGAACAACTATT---------TTTTTTTACT--------------------GAAGTATAATTGACATAC-AACATTACAT TAATTTCAGGTGTA---CATAATGATTCAAGATTTGTATATATCACAAAATGATTACCACAAAAAGTCTAGTTA--ACAT CTGTCACC-----------ATATATAGTTAC-AAAAACTTTTTTTTCTTGTTAAGAGAACTTTTAAGATCTATTCTTTTA GCAACTTTCAAATATG--CAATACAG---TATTATTAACTATAGTCACCATGCTGTACA-----------TGAACTACTA TT---GAT-TTTCCGTTTAA--TTTCTTTGGCTCCAATT-GGATTTCACATTTG-----TTTTTAG >Myotis_myotis TGTC-----------CCATCCT------------------------CATCAGGGGGGT-GTTTTGGTTACACTTCAT--- TGAACAACTATA-----------TTTTTATT--------------------GAGGTATAACTGACATAC-AACCTTACAT TCGTTTCAAGTGTACAGCATCATGATTCAATATCTGTATACATTGCAAAATGATCACTTCAATAAGTGTAGTTA--GTAT GCATTACC-----------ATACATAGTTAC--AGAACATTTTTTTCTTATTTGGAGAACTTTTAGGATCTATTCTCTTA GCAACTTTTAAATATG--CATTACAG---TATTATTCACTCCCATCACCATGCTGTACA-----------TGAGCAACTA TT---GAT-TGCCCATTGAA--TTTCTTCGGCCCCAACT-GGATTTCACATTTG-----TGTTTAT >Rousettus_aegyptiacus TGGTCCCTTCAAGAGCCCTCTT------------------------CATCG-GGGGAT-GTAT-GGTCACACTTAAT--- TGAACAACTGCT-------------TTTATT--------------------GACATATAATTGGCATAC-AGTATTACAT TAGCTTCAGGTGTATGACATAACGATTCAATATTTGTATATATTACAATGCGATCACCACAGTAAGTCTAGGTA--ATAT CCATCACC-----------GTACA--------------ATTTTTTTCTTATTTTCAGAACTTTTAAGATCTATTCTCTTG GTAACTTCTACATATG--CAGTACGG---TAATACTGA-----GCCACCATGCCGAACA-----------CCAATAACTG TC---CAT-TTTTCATTGGC--TTTCTTTGGCTCCAGTT-GGATTTCACATTTG-----TTTTTAG >Sus_scrofa TGGTTCCCTCCAGAATCCTTTT------------------------CATCA-AGGCCT-GTTTTGGTGACATTCTAT--- TGAACAACTGTT-------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----GAA-TTTCCATTTAA--TTTCCTTGGCTCCAGTT-GGATTTCACATTTG-----TCTCTAG >Tursiops_truncatus AGGTCCCCTCCAGAGTCCTGCT------------------------CATCA-AGGCCT-GTTTGGGTGACACCTTAT--- TGAGCAACTCTT-------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----GG--TTTCCATTTAA--TTTCCTTGTCTCCGTCT-GGATTTCACGTTTG-----TCTTTAG >Condylura_cristata TGGACCCCTTAAGAGCCCTCCT------------------------TATCC-GGGA--------GGTTA-ACTTCAT--- GGAAGGATTAAT-------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----GATGTTTCCATTAAATTTTTCTTTGAGTCCAGTT-AGATTTCACATTTATTTATTTTTTGG >Sorex_araneus TGGGCCC--TACAAGCCCTCCTAGACCCCCCCGCCACCCCCACAAAAATCC-AGGGTTGGTTTTGGTTACATTTCAG--- CAAACAACTATT-------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----GAT-TTTCCATTGAG--TTTCTTTGGCCCCAGTTGATTTTTCACGTTTA-----TTTTTAG >Homo_sapiens TGAGCCCCTCGAGAGCCCTCCT------------------------CACCT-AGGACT-GTTTGGGTTATACTTTAC--- TGAACAACTGTT-------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----GAT-TTTCTACTGAA--TTTCTTTGGCTCCAATC-AGACTTCATATTTA-----TTTTTCA Bat121_LINE >L1MA9_3END -------------------------------------------------------------------------TGGATGA ACCTGGAGGACATTATGCTAAGTGAAATAAGCCAGGCACAGAAAGACAAATACTGCATGATCTCACTTATATGTGGAATC TAAAAAAGTCAAACTCA-TAGAAGCAGAGAGTAGAATG----GTGGTTGCCAGGGGCTGGGGGGT--GGGGGA------- -AATGGGGAGATGTTGGT--------------------------------------CAAAGG-GTACAAAGTTTCAGTTA TGCAGGATG----------------------------------------------------------------------- -----------------------------------------------------------------------AATAAGTTC TGGAGATCTAATGTACAGCATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTA--AG-AGAGTAGA TCTTAAGTGTTCTCAC-CA------------------------------CACACAAAAAAAT-------GGTA-ACTATG TGAGGTGAT-GGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTA CACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA----------------------- --------------------------------------------------------------------- >Canis_familiaris TGGCATATAGTATATGCCAAAAAGCTGTGGCTCATATGGTCTCCACG-CATT---AAAATGGAACC-TTA---------- ---------ACATTTTGCTAAGTGA--TAAATCTGACAGGGAGAGGCAAATACTGTGTAATCTCACTTATACATGGAATC TAATAAAGCCAACCTCA-TAGAAATAGAGAGTACGCTG----GTGGGTGCCAGGGCCCAAGGGATAGGAGGGA------- -AAT-AGAAGATGTTGGTTAAAGGGCAAAAACTTAAAAAAAAAAAAAAAAAAAAAACAAAGG-ACACAAACCTCCAGCTA T--AAGCTG----------------------------------------------------------------------- -----------------------------------------------------------------------AATAAATTC TGAGGATCTGATGGGCAGCACAGTGACTATAGTAAACAATACTGTCTTATGTACTTGCAAGTTGTTA--AA-AGAGTAGA TCTGAAATGTTATCAC-CATGCA----------------CACACACACACACACACACACAC-------GATG-ATTATG TGAGAGGACAAGAAGTGTTAATTAACTTTATAGTGGTAATCATTTTGCAACATGTACGTG------------------TA CACCTTAAACTTACATA--TGTTATA--TCAATAATATCGCAATAAAGCTAGG------------GGGAAGGACCC-TTA ---AA---AAAACAAAAC--CAAAGCAAGACATGTTATCATTCTA--------------CAGCCACCTG >Felis_catus TGGG-------------CAAAAAGCTGTGGCTCAAATGGACTCCAAGATATT---AAAAAGGAGCC-TGA---------- ---------ACATTTTGTTAAGTGAAATAAATCATACACAGAAAGGCAAATACTGTACGATCTCACTTATATGTGGAATC CAATAAAGCAAACCTGA-TAGAAATAGAGAATACGTTG----GTGGTTGCCAGGGCCCGAGGGGT---GGGGA------- -AAT-GGGAGATGTTGGT--------------------------------------CAAAGG-GCACAAACTTCCAACTA T--AAGATG----------------------------------------------------------------------- -----------------------------------------------------------------------AGTAAGTTC TGGGGATCTGATGTGCAGTATAATGACCACAGTTAACAACACTGCCTTACGTACTTGAAAGTTGTTA--AAGAGAGGAGA CCTTAAGTGTTATCAC-CATGCATGAACTTGTGCACATGCACACACACGCACACACACACACATACAATGATA-ATTATG TGAGGGGAT-GGAATGGTTAACTAA--------GGGTTAACATTTTGCAATATATATGTGTATAAAGTCATCACGTTCTA CACCTTAAACTTACATA--TGTTATATGTCAATAATATCTCAATAAAACTGGGGGGAGGGGT---GAAAAGGACCC-TTA ---AA-AAATGTCAAAAC--A--------------------------------------CAGCCACCTG >Manis_pentadactyla TGGCGTATAGCATTTGCAGAAAAGGTGTTGCTGCAATGGACCCCAAG-TATT--GAAAAAGGACCC-TTA---------- ---------ACACTATGCTAAGTGACTTAGGTCAGACAGAGAAAGATAAATAGTGCATGGTCTCACTTTTATGTGAAATC AACAAAAACTGAACT---TAGTAATAGACTAGAT-TTG----GTGGCGGCCAGGGGCTGGGGAGC--AGGGAA------- -AATAGGGAGATGTTAGT--------------------------------------CAAAGG-GT-TAAACTTCCAGTTA T--AAGATGAATTCTTTCTGAGAGTGAGCACTTAATATTGTAGACAACTGTCAAAATATTTATGTTGTACACCTGAAACT AATATAATATTGTCTATCAACTATATGTCAATAAAAAAATGAACAAATAAAAATAAAAATAAAATAAAATAAATAAGTTC TGGGGATATAACATACAACATGGTGACTATAGTTACCCATACTGTATCATATATTTGAAACTTTGTA-----AGAGTAGA TCTTAAATGTTATCAG-CA--------------------CACGTGCGCACACACACACACA--------GACA------- --AGAG----AGAGGTGTTAACTAACCTAATTGTGGTGATCATGTCACAGTACATATATA-----AATCATTACATTGTA CAGCTTAA-CTTACATG--TGTTACCTATCAATAATATCTCCATAAAGCTGGGGG----------GGAAAGGACCC-TTA ---AA--AACCATAAAAT--CACAGAAGGACATCTCATCAGTCCA------------------------ >Myotis_myotis TGGTGTATAATAAACGCCAAAAAGCTGTCGCTGAAATGAACCCCAAC-TATT---TAAAAAGGCCTCTTA---------- ---------ATATTATGCTAAGTGA----AGTCAGACAGAAAAGGACAGATACTGTATGATTTCACTTACATGTGGAATA TAGAAGACCCAAACTCA-CAGA--CAGAGAGTAGATGA----GTCGTTGCCAGGAGCTTGTGGGGATGGGGGGCCGAGCA TAATGGGGGGATGTTGGT--------------------------------------CAAAGG-GTACAAACTTTCAGCTA T--AAGATG----------------------------------------------------------------------- -----------------------------------------------------------------------AATAAGTTC CTGGGATCTAATATACAGCATGGTGAGTATAGTTAACAACACTGTATTAGATACTGGAAAGTT-TTA--AG-AGAGTAGA TCTTAAATGTTATCACACA---------------------------ACACACATACAAATTAGAAAAGTGATACGTTATG TGAGGGGAT-GGAGGTATTAACTAACCTTATTGTGATCATCATTTTGCCACATACATACATATCAAATCATCACCTTGTA CACCTTAAGCTCACATA-------------AGTTATATGCAAATAAAGATAGG------------GGAAAGGACCC-TTA ---AA-AAGCCATAAAAC--CATAGCAGGACATCTTCT---TCCA--------------CATGCACCTG >Rousettus_aegyptiacus TGGTGTGTGCTAAATGCCAAAATGCTGTTGCTGAAACGGACCTCGAA-TATT---TAAAAGGACCT-TTA---------- ---------ACATTACGCCAAGTGAAGTAAGTCAGACAAAGAAAGACAAATGCTGTATGATTTCACTTACACGTGGAATC CAAAAAAGCTGAACTCA-CAAGAACAGAGAATAAGTAGCCCAGTGGTTGTCAGGGGCTGAGGGGG-TGGGGGA------- -AATGGGGAGATGTTGGT--------------------------------------CAAAGG-GTAAAAACTTTCTGTTA T--AAGATG----------------------------------------------------------------------- -----------------------------------------------------------------------AATAAGTTC AAGGGATCTAACGTACGGCATGGTGAGTACGGTGAACGAAGTTGTACTATGTACTTGAAAGCT-TTA--AG-GGAGTAGA TCTTCAATGCCATCGC-CA------------------------------CACACAAAAAAAT-------GACA-GTTACG TGAGGGGAT-GGAGGTATTAACTAACCTTGCTGCGATGATCATTTCACATTATATATGTGTGCTGAATTATCACCTCGTA CACCTTAAACTTACATA--TGTTATATGACAACACTAGGTCGATAAAGTTGGGTG----------GAAAAGGGCCC-TTA ---AC-AAAACGTAAAAC--CATAGCAGGACATCATATCATCCCA--------------CAGCCACCTG >Condylura_cristata CAGAGGGCCAAACACACCAAAAG------CCACAGACAGCGCCCAAG-CCTT---CAAAAGGACCC--TA---------- --------------------ATTGA-ACAGGTCAGACAAGGAAGGATGTCCACGCCGTGGTGTCACCAACATGGGGCACA GGGAGGACTCTAACGCACCCAAAGCAGAA-------------GCTGCTGGCAGGGC----AGGGCCTGGGGGC------- --ATGGGGAGACGGCGGT--------------------------------------CAAGGT-ATAAACTCTTCCAG--- TGCAAGTCC----------------------------------------------------------------------- -----------------------------------------------------------------------AGTAAGTTC T-GAGATCAAATG----ACATGTGGGCTGAGGTTAACAGCATTATCATTTGTATCGGCATTTGAATATTTGCAGAGTAGA GCT-AAATGTTATATC-TA------------------------------TCCGCACACAGT--------GATA-ATCATG TGAACAGA--GGGGCTGCTAACTGACCCTACTGTGGACATCATTTTGCAATGCACGCATGT-CCTAATCATCACGCTGTG CCCCAAAAGCTGGCATC--TATCATCTATCAACAGGATCTCAATAAGGTTGGGGA----------GAAAAGGGCCC--TA ---AG---AACATGCAGCTACTTAGCAGGTCATCTCATCCCTCTG--------------CAACCACCCG >Scalopus_aquaticus CAGGGTGCCATGGAGACCAAAAGGC--------------TGACCAAG-CGTT---AAAAAGGACCC--TA---------- --------------------ACTGA-ATAAGTCAGACAAAGACAGACATCTACCACGTGATGTCACTGACACGTGGCATC AAAAGAAACCCAAGTCA-CAGAAATAGAGAGCTGAATG----CTCTTGACCAGGGC---AGGGGCAAGGGGGA------- ----TGGGAGATGCTGGT--------------------------------------CACAGGTACAAAGTCTTCTAGGTA T--AAGACC----------------------------------------------------------------------- -----------------------------------------------------------------------AGCAAGTTC T-GGGATCTAATG----ACATGTGGACTGTACCTAATAACATCATTATTTTTATTAGTA-TTTGATATCTGAAGAGAGGA TCTTAAATGTTATACA-TA------------------------------TACACACACAAT--------GATA-ATCATG TGAACGGAGAGGAGGTGCTAACTGACCCTATTGTGGGCATCATTTTGCAATGCATGCATGTATCAAATCATCATGCT-TA CCCCTTTAACTGACATA--TATTAAATATCAATAATATCACAATAAAGTTAGGGA----------GAAAAGGACCC-AAA ---AG---AACATAAAACTATATAGCAAGACATCGCATCACTCAA--------------CAGTCACCCG >Sus_scrofa TAGTGTTTTGTCTACACCAAAGAGCTGCTGCTGAAATGGACCCCAGG-TATT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------AAAAAGGACCTTTTG ---TAGAAACCCTAAAGC--AATAATTGGGCTGCTTGTTCCGCCCAACCCCCCCCGCCCCCCACCCCCG >Bos_taurus TGGTGTTTTGTAAATGCCAAAAAGCTGTGTCTGAAATGACCCTCCCGCATAT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------CAAAAAGACCT-TTA ---TA-AAACCCTAAAAC--AATAACAGGGCATCTTAT---TCCACCCAACCTAGCCCCCAGCTTCCTG >Equus_caballus TGGTCTATAATATATGCCAAAAAGCTGTTGCCAAAACAGACCCCAAG-GATT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------AAAAAGGACCC-TTA ---TA-AAACTATAAAAC--CATAATAGGACATCTTATTATTCCACCCAACCTAACCCCGGGCCACCTG >Ceratotherium_simum TGGTCTGTAATATACACCAAAAAGCTGTTACTAAGACAGACTCCAAG-TATT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------AAAAAGGACCC-TTA ---TA-AAACAATAAAAT--CATAGTAGGACATCTTATCATCCCACCTTACCTAACACCCAGCCACCTG >Homo_sapiens TAATGTACAGTATATACAAAAAAGCTGTTGCTAAAATGGAGCCCAAG-TATT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------AAGAAGGACCC-TTG ---AC--AAACAGAAAAC--CATAGTGGGACATCTGATCATTCCAGCCAACCTAAACCCCAGCCATCTG Bat125_LINE >L1MA9_3END -------------------------------------------------------------------------------- --------GTGTTCTCACCACACACAAAAAAATGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTA ATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATAC CTCAATAAAGCTGGAAAAA------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- - >Canis_familiaris GATTTGAACCCTGA----CTAGGGGT------------------------------TAAACTAGGCT---AAAA------ AGGGG----------------AATTTTTTAAATTGTATCTATAGGAGATGATGG--ATGCCAGCTAAATGCATTGTGGCA CTCATTTCAGAG--TATATGTAAACCAAACTATTATGCTGTATACCTT--ACTTATACAG-TAATATATGTCAACT-TTT CTCAACAAAACTGGAA----------------AAAATCTTTTTGCCCAGAAAAAAA---AAGTAATAAAGAAAGAA---- -----TGCA-TCCTAGTAGGAGAAACAGAAATATAAAAAAATA-------ATTAAAATGCAGGGCACATGGATGGCTCAG TTGGTTGAACTGCTGACTTGATTTTAGCTCAGGTCATCACCTCGGGATCAGGCTTTGCACTCTGTTTGGGATTCTCTTTC ATGCTCTCCCTCTGGCCCTCCCCCACCCCATTCATGCATGCACTCCCTCTCTCTCTCTCTCTCTGTGCCAAATAAACAAA TCTTCTAAAAAATAATTAGAATGTA------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------ATGCTTTGGGAGCA T >Felis_catus GATTTGAACCCAGGTGATCTTGTGATCTGGCCATAGACTCCTGTTCTTCACT-CTATAAACTAAGCT---TAAC-AAATA AGGGA----------------TTTTTTTTTTATTGTATCTAAATGGGATGATAG--ATGCTAGCTAAATTTATTGTGGTA CT-ATTTCATAG--TATATGTAAACCAAACTATCATGCTCTACACCTTAAACCTATGCAG-TGATAGATATCAATTATTT CTTAATAAAACTGGAA------TTTTTATTTTTTATTTTTTTTGCCCAG----------AGAAAATAAATAAAAGA---- -----TGCA-TTCTAGTAGGGGAAACA--AATGT-AAAAACGA-------ATTACAATGCA------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------ATGTA------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------ATGCTTTGGGAGCA T >Manis_pentadactyla GATTTGAACCCCG--------GTGGTCTGGCTTCCAAGCCCTGCTCTTCCCT-CTACAAACTGCGCT---AAAA-AAATG AAGGG-------------GTATTTCTTTT-TATTATATTTATGTGAGATGATGG--ATGCTAAGTAAACTTATTGTGGTC ATCATTTCACAA--TATATTTTAATTAAACCATCATGCTGTATGCCTTAAATGTACACAG-TCATATATGTCAATTATTT CTCAATAAAACTATAA--AA-----TGAATAAACAGTTTTTT--CCCAG----------AAA----AAATAAAGGG---C TGTTTCCCA-TTCAAGTGGGGGAAACAGAAATGT-AAAAAATA-------ATTAAAATGGA------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------ATGTA------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------ATGCTTTGGAAGCA T >Equus_caballus AATTTGAATCCAG--------GTGGTCTGGCTTCAGAGCCCTGCTCTTTACT-CTACAAACTAGGCT---AAAAAAAATA AAGGA----------------TTTCTCTT-TATTGTCTCTATATGAGATGATAG--ATATTAACTAAATCTATTGTGGTA ATCATTTCAGCA--TATATGTAAATCAAACCATCATGCTATATACCTTAAACTTATATAG-TGATATGTATCA----TTT CTCAATAAAACTGGGA--AAAAAATTAAAAATAAAGCTTTTT--CCCAGAAAATA----AATAAATAAATAAAGGA---- -----CGCT-ATCTAGTGGGGGAAACAGAAATGT-GAAAAATA-------ATTAAGATGCA------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------ACGTAGGGGCCAGCCCCGTGGCCGAGTGCTTAAGTTCGCCTGCTCCACTTTGGCGACCCA GTGTTCACCAGTTAAGATCCTGGGTGCGGACCTACACACTGCTCATCAAGCCTCACTGTGGTGGTGTCCAACATAGAAGA ACTAGAATGATCTACAACTAGGATATACAACTATGTATTGGGGCTTTGGAGAGAAAAACAAAAAAAGGGGGGGGAAGATT GGCAACAGATATTAGCTCTGGGCCAAACTTCCTCACCAAACAAACAAACAAACAAAATGCAATGTAATGCTTTGGGAGCA T >Ceratotherium_simum GATTTGAACCCAG--------GTGGTCTTGCTTCAGAGCCCTACTCTTCACT-CTACAAACTAGGCT---AAAA-AAATA TAGGA----------------TTTCTTTT-TATTTTACCTATATAAGATGATAG--ATGTTAACTAAACCTGCTGTGGTA ATCGTTTCACAA--TATGTGTAAATCAAACCATCGTGCTGTACACCTTAAACTTATACAG-TGATGTATATCAATTATTT CTCAATAAAACTGGAA--AAAAA--TAAATAAACAGTTTTTG--CCCAGAA--------AATAAATAAATAACGGA---- -----CACA-TTCTAGTGAGGGAAACAGAAATGT-GAAAAATA-------ATTAAAATACA------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------ATGCA------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------ATGTTTTGGGAGCA T >Myotis_myotis GTTTGGGACCCAG--------GTGATCTGGCTTCCAAGCCCCACTCTCGACT-CTAAAAACTAGGCT---ACAAAAACCA CAGG-------------------------------------------ATGATGG--AGGTTAACTAAACCTATTGTGGTA ATCACTTCACAA--CACATGTGAATCAAGCCATCATGCTGCACTCCTTATACTTATACAG-TGATGTATGTCAATTATTT CTCAATAAAACTAAAAGTAAACTAAAAAATAAACAGGCTTTT--CCAAA----------AAAATAAAAATAAAGAA---- -----TACA-CTCTAGTGAGGGAAACAGAAATGT-AAAAAATA-------ATTAAAATACA------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------ATGTA------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------ATGCTTTGGCAGCA T >Rousettus_aegyptiacus GATTGGAACCCAG--------GTGATCTGGCTTTAGAGCCTTGCTCTCCACT-CTATAACATAGGCT---ATGA-AAACA AAGGA-------------TTCTTTCTTTTCTATCTGCATGAGATGAGATGATAA--ATGTTAACTAAGCCTATTGTGGTA ATTATTTCACAG--TGGACGTGAATCAAACCATCACGCTGTACACCTTAAACTTACACAG-TGATATATGTCAATTCTTT CTCAATAGAACTGAAA--GA-----CAAAATAACAGGTTTTTTCCCCAATA--------AATAAATAAATAAAAGA---- -----TACATTTTTAGTGGGGAAAACAG---TGT-AAAA-----------GTTAAAATGCA------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------ATGTA------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------ATGCTTTGGGAACA T >Sus_scrofa GATCTGAACATAG--------GTAGTCTGGCTTCGGAGCCCTGCTCGTCACC-CTACAAACAAGGCT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------AAAAAAAAAATAAAGGA---- -----CACA-TTCTGGTGGGGAAAACAGAAGTGGAAAAAAAAAAAAAAAGATTAAAATGCA------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------AGGCA------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------ATGCTAAGGGGGCA T >Bos_taurus GATTTGAACCCAC--------ATAGTCTGGCTCCAGAGCCCTCCTCTTCACT-CTGCAAACTGGGCT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------AATAAATAAATAAAGAA---- -----CATA-TACTAGTGGGGGAAATAAAAATGT--AAAAATA-------GGTAAACTGTA------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------CTGTA------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------ATGTTATGGGAACA T >Condylura_cristata GACCTGAAGCCAG--------GTGGCATGGC-ACTGAGCCCGCCTCTTCACT-TTATAAACCAGGAG------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------AAAA---AGCTAAAAGG---- -----CACA-TTCTAAT--GAGAAGCAGAGGC---AAAAGAAA-------ATTAAAATGCA------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------ATGTA------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------ATGATACGGCACCA A >Sorex_araneus AGCCTG---------------GTGGATAGGC--AGGAGTATTGCTATTTTTTCCTGCAGACTAGACT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------CAAA---CAGTAAAGGA---- -----CACA-TTCTAATGGGGGAAGCAGGAGTGT-AAAAAACA-------GTGCAAGTGCA------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------TGTG------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------GTGAT-------CA T >Cavia_porcellus AATTTGCACTCAG--------GTGACCTGGCTTCAAAGCCCTGCTTTCAACT-CTATAAGCTAAGCT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------ATAA----GAAAAAGGA---- -----CACG-TTCTAATGCGAGACA-AAAAATGTAAAAAAAAA-------ATAATAATTCAA------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------ATGCA------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------GTG-----GGAGTA T Bat129_LINE >L1MA9_3END --------------------------------------------------------------------------TTTTTC CAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATATACGTATAC ATTGTGAAATGATTACCACAATCAAG------------------------------------------------------ --------------------- >Canis_familiaris TGTATTCAGAG--TTGTTTATGATCTTTGGCTGTCTGCTCTAAAGGAAACTT---GAAAAA--CT-------CCTTTTCT AAGTTTTATGGAGATGTAATAGACACTT-AACACCACATAAGTTTAAGATGTACGGCTCAATGACTCGACTTTC--ATAT ATGGCG-AATGGTTG--------------AGAAAACT----CAGTCTTGACTC--GAGCACAAAAGTGTGACATTGTAAA ATTAAG----TATTTGGGGGG >Felis_catus TGTATGCAGAG--TTGTTTATGATCTTCGACTGTCTGCTGTAATAGAAACCT---AGAAAA--AC------TTCTTTTCT CAGTTTTACTGAGATATAATTGACAC---AGCACTGCACAAGTTGAAGGTGTGGGGCACAGTGACTTGACCTTC--AACT GTTGTG-AATGATTG--------------AGAAACCT----CAATCTTTACCCACGAACACAAAAGTGTCACATTTTAAA ATTAAGTAATTTGGGGCGGGG >Manis_javanica TATGTAGAGAG--CTCTTTATGATCTCAGGCTG-----TCTAAAAGAAGTGT---AGAAAATGCT------TTTTTTTCC CAGTTTTATTGGAATACAGTGGACATAC-AGCACTATATAAGCTTAAGGGGTGTAGCATAGTGACTCAACATAC--ATAG ACTGCAAAATGATTA--------------AGAAAACT----CAATCCTGACCCAGGAACTCAAATGTGTGAAGGTTTACA GTTAA--------CTGTGGGA >Sus_scrofa TGTATGCAGGGAATTGCTTCTGATTTTAGGCTGTCTACTTCAAAAGAAACTT---AGAAAA--CT---CTTTTTTCCCCT CAGTTATATTAAATTATAATGATCATAT-GGCACTGCA-GAGTTTAAGGTGTTAAGCATCATATATTGATATCC--ATAT ACTGGGAAATGATTG--------------AGAAAACT----CAATCCCCAAAAAAGAATGCAAATGTGTGAAGGCTTAAA ATTCAG----TAAGCATGAGG >Bos_taurus TGTATGCAA------GTTTCTGATCCTAGGCTGTCTACATCAAAAGAATCTA----------------------TTTTTT CAGCTGTATTGAATTATAATTGACATAG-AGCACTGTGTGAGTTTAAGATGTACAGCATAATGTATTGATGTAC--AAAT ATTGGGAAATGGTCA--------------AGAAAACT----CAGTCCCAAAGAAAGAACACAAATGTGTGAAGGATTAAA ATTAAA----TAACTGTGGGG >Myotis_myotis TGTATGCAGAGAGCTGTTAATGATCTTAGGCTGTCCACTCTAAAAGAAACTT---AGAAAA--CT--------TTTTTTT CCATTTTATTGAGATATAATTGACATAC-AGCACTACAGAAGTTTAAG--------CCTAATGACTTGACATAC--ATAT ATTGTGAAATGATTG--------------AGAA-ACT----CAATCTTAACCCAAGAACACAACTGTGTGAAGGTTTAAA ATTAAG----CAACTGTGGTG >Rousettus_aegyptiacus TATATGTAGAGAGATGTTTAC-CTCTTAGACTGTCTACTCTAAAAGAAACAT---AGAAAA--CT-----TATTTTTTTC CAGTTTTATTGAAATATAATTGACATAC-AGCACTATAGTAGTT-AAGGTAGACAGCACAATGACCTGACATAC--ATGT ATTGTGAAATGATTA--------------AAAA-ACT----CAATCTTGACCCAGGAATACAAATGTATGACAGTTTAAA ATTAAGTAACTAACTGTGACA >Condylura_cristata TTTATGCAGAGAGTTGTTTATGATCTTCCACTGTCTACTCCAAAAAAAACAT---AGAAAA--CT---------TCCCCC CAGTTTTATTGAGCTATAATTGGCATGCAGTCTCTATAAA-------------CCACATAATGA--TGGCATCA------ -------TATGATTG--------------AAAAAAATG---CAAACTTGGCCCAAGAACACAAATGTGTGAAGGTTTAAA ATAAAG----TAGCTGAAGAG >Solenodon_paradoxus CATATGCAGAGAGCTGTGTATGACATCAAACTGTCTACTCCAGATGAAACTT---AGAAAATGCT--------TTTCTTG CAGTTGTATTGAGATACAATTGACATGA-AACCCTGTATAAGTATAAGGTATATGGTGTAATGCCCTGATATAC------ --TGTGAAATGATTG--------------AGAAAACA----TCATCTCTGTCCAAGAACACAAATGTGTAAAGGTTTAAA ATGAAA----TAACTAAGGGG >Equus_caballus TGTATGCAGAGGATTGCTCATGATCTTAGACTGTCCACCCCAAAAGAGACTC---AGAAAA--CT--------------- -------------------------------------------------------------------------------- -----------------------------------------CAGTCTTGACCCAAGAACACAAATGTGTGAAGGTGTAGA ATTAAG----TGACCGTGGGG >Ceratotherium_simum TGTATGCAGAGGGTTGTTCATGATCTTAAACTGTCTACCCCAAAAGAAACTT---AGAAAA--CT--------------- -------------------------------------------------------------------------------- -----------------------------------------CAGTCTTGACCCAAGAACACAAATGTGTGAAGGTTTAAA ATTAAG----TAACTATGGGG >Homo_sapiens TACATGCAGAGAGATGTTTAT-----------------CTCAAAAGAAGCTC---AGAAAA--CT--------------- -------------------------------------------------------------------------------- -----------------------------------------CGATCTTAACTGAAGAATACAAATGTGTGAAG------- ----------TCACCGAAGGA Bat130_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------TTTTTCCAGCTT TATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTG---TACAACGTGATGTTTTGATATACGTATACATT GTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTACCAT------TTTTTTGTGTGTGGT GAGAACACTTAA-GATCTACTCTCTTAGCAAATTTCAAGTATAC-AATACAGTATTATTAACTATAGTCACCATGCTGT- -ACATTAGATCTCCAGAACTTATTCA------------------------------------------------------ -------------------------------------------------------------------------------- ---------------------------------------------------------TCCTGCATAACTGAAACTTTGTA CCCTTTGACCAAC--ATCTCCCCATT-----TCCCCCAC------CCCCCAGCCCCTGGC-------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------ >Canis_familiaris AAAGCAC--TAAATAAATGTTTTTTTACCATTATTATTGAGGA-TACCTAGAAAGCCAAGCA------------------ -------------------------------------------------------------------------------- -----------------------------------------------------TTCTTATTGTTT--------------- -ATTGAAGTATAACTGATAT---AAAATTGTATTAGTTTTAGTTG---TACAAC---ATGAATCAACTTTTGTATACATT ATGAAATGATCACCATT----GTCTAATTAAC--CTCCATCACTATACATAGTCACAGTAATC--TTTTTTTCTTATTAT AAGACCTTTTAA-GATCTATTTTCTTAGCA-CTTTCAAAGATGC-AATGCAGTATTATTAACTCTAGTCACCATGCTGT- -ACATTACATCGCCATAACTTACTTA------------------------------------------------------ -------------------------------------------------------------------------------- ---------------------------------------------------------TTTT--ATAGCTGGAAGTTTGTA CC-TTTGGCCTC---CTTCACACATT-----TCACCCACTCC---CACCCCACCTCTGGCAACCACCAGTCTGTTC-TCT ATATCTAAGAGCTTGGTTTTGTTTTATGTTGTTTTGTGTTTTGTTCCTTGTTTTTTTTTTTTTTTA---TTTTTTATTTT TATTTTTTTTT---AACCATTAAGTATTTGCC-ATGAAGTTCATCAAAGTA-TTTAAAACTCTGGC >Felis_catus AAAGCACATAAAATAGAT-ACTTGTTACCATTATTATTGAGGA-TGCTTAGAAAACCGAGTG------------------ -------------------------------------------------------------------------------- -----------------------------------------------------TTATTGTTGTTT--------------- -ATAGAGAT----CTGATAT---AAAATTTTATTAGTTTTGGGTGT--CATGACACAATGATTCAATATTTGTGTACATT GAGAAATGATCATCACCA-AAGCCTAATTAAC--CCCCATCACTGTACATAGTTGTACAAATT--GTTTTTTCTTATTAT GAGAACTTTTAA-GATTTGTTCTCTTAGCAACGTTCAGATATGC-AGTGCAGTATTACTAAGTATAGTCACCATTCTAT- -GCATTAAATCCCAGTGACTTATTCA------------------------------------------------------ -------------------------------------------------------------------------------- ---------------------------------------------------------TTTT--ATAACTGTAAGTTTGCA CC-TTTGACCCC---CTTTACCTATT-----TCATCCACTT-----------------------ACCAGTCTGTTC-TCT GTATCTAAGAGCTTGGTTTGGTTTGGTTTTGTTT-----------------------------------TTGTTCTTTGA TGTTTTTTTTT---AACTATTAAGTATTTGCC-ATGAAA-TCAT-AAAGTA-TTTAGAACTCTGGC >Manis_pentadactyla NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCCTAGAAAACCAAACT------------------ -------------------------------------------------------------------------------- ---------------------------------------------------TTTTTTTTTTCTTC--------------- -TTTGAGGTACAATTGGCATAT-----------TGGTTTCAGATG---TACAACATAATGGTTTGATATTTGTATACATT GCAAATTGATCATCACAATACTTGTAGTTACT--GTCTGTCACCTTGCATAATAACAAAAAATATTTTTTTTCTTGTAAT GAGGACTTTTAA-GATCTACTTTCTTAGCAATTTTCAAATATGC-CATACAATATTATTAACTATAG--ACCCTTCTGT- -GCATTATATCCCCATGACTTATTTA------------------------------------------------------ -------------------------------------------------------------------------------- ---------------------------------------------------------TTTT--GTAACTGGAGTATCTTA CCATTTGGTCCT---CTTCACCCATT-----TCTCCTGTTTCCTACCCACTGCCTCTGGCACCTATCAGTATATTC-TCT GTGCCTACGAGCTTGGGGCGGGGGAGTTGTTTAGGTT--------------------------------TTTTTTTCTTT TTTTTTTTTTA---AACCATTAAGTATTTACC-ATGAAGTTTATCAAAGTA-TTTAAAACTCTGGC >Sus_scrofa AAAACAC--TAAATGAGT-ATTTGTTAACATTA---TTGAAGAATGCTCAGAAAACCAAGTG---CATTGTTGCTGTTGT TGTTGTTTTGGGGGTATACCCAACCGCATGGGAAAGTTCCCAGGTCAGGGATCAAACCTGTGCCACAGCTGTAACCAGAG CCACAGCGGTGACAACACTTAACCCTTGGAGCCATGAGCGAAGTCCTTTTTTTTTTTTTTTTTAA--------------- -ATTGAGGTGTAGTTAATATAT-AACATTGTGTTTGTTTCAGATG---TACAACATAATGATCCAATAT-TGCAAACATT GCAAAAGGATCATCCCAGTAAGTCTACTTAAC--ATCCATCCCCCTACATAGTTACAAAACAG--TTTTTTTCTTGTGAT GAGAACTCTTAA-GACCTACTCT-TTATCAATTTTCAAATAGGC-AGTACAGTATTATTAACTACAGTCACTCTGCTATT -ACATTACATCCTCAGAACTTATCTG------------------------------------------------------ -------------------------------------------------------------------------------- ---------------------------------------------------------TCTT--ATAATTGAAAACATGTA CCCTTTCACCTCC--CTTCATCCATTTC---TCTCCCACCCTCA-CCCCCTGCTTGTGGCAAC-AAAAATCTTTTC-TAT ATTCCTTGGAGCTTGTTTT--------------------------------------------------TTTGTTTTGTT TTTTGTTTTTA---AACTAT-AAAGATTTACCTGTGAAGTTCGTCAGAGTA-TTTAAAACTCTGGT >Tursiops_truncatus AAAACAC--TAAATAAAT----ATTTAACATTATTATTGAAGAATGCCTAGAAAACCAAATA------------------ -------------------------------------------------------------------------------- -------------------------------------------------TTGCTTTTTTTTTTAA--------------- -ATTGAGGTATAGTTGATATAT----AGCATATTAGTTTCAGGTG---TAAAACATAATGGTCCAATAT-TGTACACATT GCAAAATGATCACCACAATAAGTCTACTTAAC--ATCCATCCCCTTACATGGTTACAAAACA---GTTTCTTCTTGTGAT GAGAACTTTTAA-GATCTACTCTTTTAGCAACTTCCAAATATAC-AATACAGTATTATTAACTATAGTCACCCTGCTGTT AACATTACATCTCCAGAACGTATCTA------------------------------------------------------ -------------------------------------------------------------------------------- ---------------------------------------------------------CCTT--ATAATTGGAAGTTGGTA CCTTTTGACCCCCTTCTTCATCCATT-----TCTCCCACCCTCA-CCCACTGCTTGCGGCAACGACTAACCTGTTC-TCT GTATCTATGAGCTTG----------------------------------------------------------TTGTTGT TGTTTTTTTTA---AACCATCAAGTATTTACC-ATGAAGTTCATCAAAGTA-TTTAAAACTCTGGT >Equus_caballus AAATCAA--TCAGTAAAT-ATTTATTAACATTGTTATTGAAGAATACCCGGAAAATCAAGTG------------------ -------------------------------------------------------------------------------- -----------------------------------------------------TTTTT---------------------- --------TATAATTGACATAT-AACGTTATATTAGTTTCAGGTG---CAAAACATAATGATTCCATGTTTGTATACATT GTGAAATGATCA---CAATAGGTCTAGTTAAC--ATCCGTCACCTTACATAGTTACAAAACTTTCTTTTTTTCTTGTGAT GAGAACTTCTAA-GATCTACTCTCTTAGAAACTTTCAAGTAGGC-AATACAGTAT---TAACTGTAGTCACCAGGCTGT- -ACGTTGCATCCCCGTGACTTACTTA------------------------------------------------------ -------------------------------------------------------------------------------- ---------------------------------------------------------TTTT--ATAACTGG--GTTTGTA CCTTTTGACCCC---CTTTACCCATT-----TCTCCCA-------CCGCCTGCCTCTGGAAACCACCAATCTGTTT-TCT GTATCTATGAGCTTTA---------------------------------------------------------------T TTTTTTGTTTT---AACCATTAAGTATTTACC-ATGAAGTTCATCAAAGTA-TTTAAAACTCTGGT >Ceratotherium_simum AAATCAA--TCGATAAAT-ATTTGTTAATATTACTATTGAAGAATGCCCAAAAAACCAGGTT------------------ -------------------------------------------------------------------------------- ---------------------------------------------------------TTTTTTTT--------------- -ATTGAGGTATAATTGACATAT-AACGTTATATTAGTTTTGGGTG---CAAAACATAATGATTCCATATTTGGATACATG GTGAAATGATCAC------AAGTCTAGTTAAC--ATCTGTTGCCTTACATAGTTACAAAAATTTCTGTTTTTCTTGGGAT GAGAACT-TTAA-GATCTACTCTCTTAGCAGCTTTCAAATATGC-AATACAGTAT---TAACTATAGTCATCATGCTGT- -ACATTACATCCCCATGACTTATTTA------------------------------------------------------ -------------------------------------------------------------------------------- ---------------------------------------------------------TTTT--ATAACTGGAAGTTTGTA CCTTTTGACCCC---CTTCACCCATT-----TCTCCCA-------CCCCCTGCCTCTAGAAACCAACAATCTGTTC-TGT GTATCTATGAGCTTTG---------------------------------------------------------TTTTTCT TGTTTTATTTT---AACCATTAAGTATTTACC-ATGAAGTTCATCAAAGTA-TTTAAAACTCTGGT >Myotis_myotis AAAGCAC--TAAACA--------TTTAACATTATTATTGAAGAATGCCTAGAAAAGCAAGTG------------------ -------------------------------------------------------------------------------- -------------------------------------------------------GTATTTTTAA--------------- -ATTGAGCTATAATTGACATAT-AACATTATATTAATTGCAAGTG---TACAAC---ATGATTCGATATCTGTATACATT ATGAAATGATCATCACAATAAGTCTAGTTAAC--ATC-ATCACATTACA-------AAAAGTT--TTTTTTTCTTGTGAT GGGAACTTTTAA-GGTGTACTCTC--AGCAACATTCAAATATGTAAATACAGTATTATTAAGTATAGTCACCATACTGT- -ACATTGCATCACCATGACTTTTTGTTTAATTGAATTTTAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGATTGATTTGTTGTTCTACTTATTTATGCATTCTGACTAGGGATGGAACCTGCAACCTTGGCAT ATCTGGACTATGCTTTAACCAGCTGAGCTACCCAGCCAGGGCATGACTTGTGTGTTTTTTTAAATAATTAGAAGTTTGTA CCTTGTGACCCTC--CCCCACACACTCCCATTTTACCACTTCC--CATCCCATCTCTGGCAGCTACCAATCCGTTCTTTT GTATCTCTGAGTTTG---------------------------------------------------------------TT GGGTTTTTTTA---AGTCATTAAGTATTTACC-ATAAAGTTCATCAAAGTA-TTAAAAACTCTGGT >Rhinolophus_ferrumequinum AAAGCAC--TAAGTAAAT-ATTTGATAACATTATTATTGGAGAATGCCTAGGAAAGCAATTT------------------ -------------------------------------------------------------------------------- ------------------------------------------------------TATTTTTTTAA--------------- -ATTGAGGTATAATTGACATAT-AACATTATATTAGTTTCAAGTGTACTACAACGTAACGATTCAATATTTGTGTACATT GTGAAATGATCA---CAATAAATCTAGTTCAC--ATCTGTCACATTACAGG------TAAAAAAATTTCTTACTCGTGAT GAGAACGTTTAAAGATCTACTCT---AGCAACTTTCAAATATGC-AATACAGTGTTGTTAATGACAGTCACCATGCTGT- -ACATTATATTTCCAGGACTTNNNNN------------------------------------------------------ -------------------------------------------------------------------------------- ---------------------------------------------------------NNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNN---------------------------------------------------------------NN NNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Condylura_cristata AAAGCAC--TAAATAATT-ACTTGTTAACGTTATTTTTGAAGAATGCTTTGAA-----CTTA------------------ -------------------------------------------------------------------------------- ---------------------------------------------------------------TT--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------TACC----ATTATTTACC-ATGAAGTTCATCAAAGTA-TTTAAGACTCTGGT >Sorex_araneus AAAGCAC--TTAATTATT-TTTTGTTAACATTATT-TTGAAGAATGCCTAGAAA----TTTA------------------ -------------------------------------------------------------------------------- -----------------------------------------------TTTGTTTTGTTTGTTTGT--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------TTCCCTGAAGTATCTGCC-ATGAAGTTCATCTAAGTATTTTAAAACTGCACT >Homo_sapiens AAAGCAC---TAATAAAT-ATTTCTTAACATTATAATTGAAGAATGACTGGAAAGCCAAGTG------------------ -------------------------------------------------------------------------------- -------------------------------------GGCTTTGTTTTTTGTTTTCTGTTGTTTT--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------TAACATTAAGTATATACC-ATGGAGTTCATCAAACTATTTAAAAGCTCTGGT Bat133_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------TAAGTTCTGGAGATCTAATGTACAGC-ATGGTGACTATAGTTAATAAT---ACTGTATTGT A-TACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTC-TCACCACACACA---AAAAAATGGTAACTATGTGAGGTG ATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAA ATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA------------------------------- -------------------------------------------------------- >Canis_familiaris ATTTTATTTTTC----------------TTGTACATAAATTTTGAACATT---AA------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------AAGTTCTTTA-----------------GTAAAGTGCAGC-ACAGTGACTATAGTTAATAAC---ACTGTATTGC A-TGCTTAAAAGCTGCTAAGAGAGTAGATCTTTAAAGATTGTTATGAGGAGAA---AAAAAGT--TAACTATGT--GGTG ATAA--ATGTTAATTAGACTTATTGTGATGATCATTTTGCAGTATATACAAATATTGAATCATTATGTTGGACACCTGAA GCTAATGTAATGTTATTATGTCAGCTCTATCTCA------------------AAGAATTCTCTG---CTTTTTATAAATA CATAATAATTTAGGGGAA--------------------TAAGCCAAGATCAAGAAA >Felis_catus ATTTCATTTTTCTTAAAGTTATAGAGATTTGTCxCATAAACTTA------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----CAAGTTCTTGC------------------TGATGTACAGC-ATGGTGACTACAGTTAATAAT---ACTGTATTGC A-TATTTGAAAGTTGCTAAGAGCATAGAT----AGAGTTTGTTATCAGGATAA---AAAAATTTATAACTATGT--TGTG ATAA--ATGTTAACCAGACTTATTGTGGTTATCATTTCATAATATATATAAATATTGAATTATTATATTGTACCCCTGAA GCTAACATAATGTTTATAAGTCAGCTATATCTCAGAA---------------TAAAGTTCTTTG---CTTTGTATAAATA CA---TAATTTAGGAGAA--------------------TAAGCCAAGATCAAGAAA >Manis_pentadactyla ATTTGATATTTCTTAAGGTTATAGAGAATTATCCATAAACTCTGTACATT---AA------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------AAGGGCTTTT-----------------ATAATGCACTGC-ATGGTAACTGCA-TTAATAAT---ACTGTATTGC A-TATCTGAATGTTGCTAAGAGAATAGATCCTAAAAGTTT-TCATCGGAAGAAA--AATGTTTTCTAACTATATATGGTG ATGG--ATGTTAACTAGACTTATTGTGGTGATCATTTTGCAACATATATAAATATCAAATAATTATGTTGTACAACTGAA ACTAATGT----TTTATGT-CCAGTTATATATTTTT----------------TAAAGTTCTTTG---CTTCGCATAAATA CATAATAATTTAGAAGAA--------------------TAAGCCAAGATTGAGATA >Sus_scrofa ATTTTATTTTTCTTTAGATTATAGATAATTGCCCATAAACTTTGTACATT---AAAAGTTCTTTAGGAGTTCCTGTCGTG GCTCAGTGGTTAACAAATCCAACTAGGAACCATGAGGTTGCAGGTTTGAACCCTGGCCTTGCTCAGTGGGTTAAGGATCC AGTTTTGCCGTGACCTGTGGTGTAGTTTGCAGACACAGCTCAGATCCTGCATTGCTGTGGCTCTGGCATAGGCTGGTGGC AACAGCTCCGATTAGACCCCTAGCCTGGGAACCTCAATATGCCACAGGAGGGGCCCTATAAAAGGAAAAAAGACCAAAAA AAAAAAAAGTTATTTG-----------------GCAATGTATAGC-ATAGTGACTAGATTTAATAAT---ATTGTATTGC ATTATTTGAAAATTGCTGAGAGAGTATATTTTAAAAGTTC-TCACCACAAGAA---AAA-------AAATGCGTGTGGTG ATGG--ACATTAACTAGATTTACTGAGGTGTTCGTTTCATTATGTAAACAAATACTGAATCATTATGTTGTACACCTGAA CCTAATATATTGTT-ATATGCTAATTATACCTCAATTTTTTAAAA-------AAAAGTTCCTTG---CTTTGGGTAAATA CATAATAATTCAGGAGAA--------------------AAAGCCAAGACTGAGAAA >Bos_taurus ATTTCATTTTT---AAGATTATAGAGGATTATCCATAAACTTTGTACATT---AA------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------AAGTTCTTGG-----------------GTGATATGCATC-ATGGTGACTATAGTTAATAGT---ATTATATTAC A-TATATGAAAATTGCTAAGA--TTATATTTTAAAAGTTC-TCATCACAAGAA---AAAAATGTATAACTATGTATGCAG ATAG--TCATTAGTTAGATTTATTGTGATGCTCATTTTACTATATAAACAAATATTGAATTAGTATATTGTACACCTGAA -CTATCATATTGCT-ATATGCTAATTATACCTCATTTTT-------------TAAAGTCCTTTG---ATTTGTGTAAATA CATAACATTTCAGGAGAC--------------------TAATCCAAGACTAAGAAA >Equus_caballus ATTTCATTTTTGTTAAGCTTATAGAGAATTGTCCATAAACTTTGTACATT---AA------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----GAAGTTCTTTG-----------------GTAATCTAGGGC-ATGGTGACTACAAGTAATAAT---CCTGTAATGC A-TATTTAAAAGTTGCTAAGAAAGTAGATCTTAAAAGCTC-TCATCACAAGAAAAGAAAATTTTGTAACTATGTATGTT- -TGG--ATGTTAACTAGACTTACTTTGGTGCTCATTTCACAGTATATACAAATATCAAATCATTAGGTTGTACACCTGAA ACTAATATAATGTT-AAATGTCAATAGTACCTCAATAAAAA-----------GAAAATCCTTTG---CTTTGGGTAGACA CATATTAATTTAGGAGGA--------------------TAAGCCAAGATTGAGAAA >Tapirus_indicus ATTTCTTTTTTGTTAAGGTTGTAGAGACTTGCCTATAAACTTTGTACGTT---AA------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AAAGTTCTTTG-----------------CTAATATACAGCAATGGTGACTACAAGTAATAAT---ACTGTAATGC A-TACTCAAAAGTTGTTAAGAAAGTGGATTGTAAAAGCTT-TCATCACAAGCAAA-AAGTGTTTGTAACTATGTATGTT- -TGG--ATGTTAACTAGACTTACTGTGGTGATCATGTCACAATATATACAAATATCAAATCATTTTGTCATATACCTGAA ACTAATATAATGCT-ATATGCCAACTATACCTCAATAAA-------------AAAAGTCCTTTG---CTTTGGATAAATA CATATTAATTTAGGAGAA--------------------TAAGCCAAGACTGAGAAA >Myotis_myotis ATTTTATTTTTCTTAAGGTAATAGAGAATTGACCATAAGCTTTATACATT---AAACGTTATTT---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------GGTAAGAAAAGAATAA AGAAAAAAGTGATTTG-----------------GTAATGTACAGC-ATGGTGACTACAGTTGATAAT---ACTGTAGTGT C-TATTTGAAAGTTGCTAA----CTAGATCTTAAAATTT-------ATAAGAA---AAAGTTATAAAAC----TATGGTG ATGG--ATGTTAAC-----GTATTGTGGTGATCATTTCACAATATATACAAATATCAAAATATTAGGCTGTGCACCTGAA ACTAATATAATGTT-ATATGTCAATTACACCTAAATTTTTA-----------AAAAGTTATTTG---CTTTGGGTAAATA CATAGTAATTTAGGAGAA--------------------TAAGCCAAAATTGAGAAA >Rousettus_aegyptiacus ATTTCATTTTTCTTAAAATTATAGAGCGTTGTCCATAAACTTTGTACATT---AA------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------ACGTTCTTTG-----------------GTAAAGTACAGC-ATGGCGACTACAGTTAATAATAACACGGTGTGAC A-TATTTGAAATTTGCTAAGAAAGTAAATCTTAAAAGTTC-TCATTACAAGAA---AAA---TTATATCTATGTATAGTG ATGG--------------------------ATCATTTCACAATATATAAAAATATTGA---ATTATGTCATACG-CGGAA ACTAATATAATGTT---ATGTCAGTTATACCTCAATCTTTAA----------AAAAGTTCTTCG---CTTCG-GTAAATA CATAAAAATTTAGGAGAA--------------------TGAGTCAAAATTGAGAAA >Condylura_cristata ATTCCACTTTTCTTAAGGTAGTAGAGGATTGCCTGCAAATTTTGTGTATA------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------AATCATTCTCGG---TGGTGCGTGAATA AATGATATCTTTTAAGAA--------------------TAAGACAAAACTGAAAAA >Sorex_araneus ATTTCATTTTTCTTACTGTTATAGAGAATTGTCTATAAACTTTGTTCGTT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------AAAAGTGCTTTA---CTTTGAACAGTTA TGTAAGAATTTAGGATGC--------------------CAACACAAGATTGAGAAA >Homo_sapiens ATTTCATTTTCCTTAAAGTTATAGAGAATAGCCCATAAACTCTGTGCATT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------AAAAGTTCTTTG---CTTGGGGCAAATA CATAATAATTTAGAAGAATAAGCTTGGAATGCATCAGCTAAGCCAAGAATGAGAAA Bat137_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------TTTTTCCAGCTTTATT GAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATA-TACGTATA---------- -------------------------------------------CATTGTGAAATGATTACCACAATCAAGCTAATTAACA TATCCATCACCTCACATAGTTACCAT------------------------------------------------------ ------------------TTTTT--TGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAAATTTCAAGTATACAA TACAGTATTATTAACTATAGTCACCATGCTGTACATTAGATCTCCAGAACTTATTCATCCTGCATAACTGAAACTTTGTA CCCTTTGACCAACATCTCCCCATTTCCCCCACCCCCC------------------------------------------- -------------------------------- >Canis_familiaris TGGTTACCATATG-TG---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --AAGGAATTTCGG------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------TTTTCTATTTATAAATATATGTCTC-AAAA---TTTCTT---TTTTTCC----------AGTTTCATT GAGATA----------------------------TAAAGTATACAGAACAATGATTTGACTAAACATAAA---------- ---------------------------------------------TTGAGAAATGATTGCCATGATA-----AGTTAAC- -ATCTATCATCTCATAGAGATACAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGGAAA AAAGAAAAAAAAATGTGGTTATT--CCCTTGTGATAAGAACTCGTAGGCTCTACTCTCTCAACGACTTTCAAATGTGCCA CTCAGCAGAGTTCATTATAGTCACCATGCTGTACATCACATCCCCAGGACTCACTGA-----TCTCACTGGAACTCTGTA CCTTTTAACTACTTTCATCTAA-----------------TTCTCTTTTTATTCC---TTTCTCTAATTTTC-CAACAATC TTAGACGGTGAACCAACCACAGCCTTTGAGGA >Felis_catus TTGTTGCCATGTGCCT---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --GAAGAAGTCTGATTTTCCAATTATTTTAAATGTTTTTTTTTTTTCAACGTTTATTTATTTTTGGGACAGAGAGAGACA GAGCATGAACGGGGGAGAGGCAGAGAGAGAGGGAGACACAGAATCGGAAACAGGCTCCAGGCTCTGAGCCATCAGCCCAG AGCCTGACGCGGGGCTCGAACTCCCGGACCGCGAGATCGTGACCTGGCTGAAGTCGGACGCTCAACCGACTGCGCCACCC AGGCGCCCCTGATTTTCCAATTATAAGTAAACACTTG-AAAA---CTTCTTTCTTTTTTGC----------AGTTTCATT GAGATACAATTGGCAAAC-AGCACTGT-TAAGTTTAAGATACACAGGACAATGATTTGACT-GACACAGA---------- ---------------------------------------------TTGTGAAATGATTACCAT-ATAAGTTTAGTTAAC- -ATCTGTCCTCTCATACAGATGCAGG-------------------------------------AAAAAAAGGAAAGGAAA AAGCAAAAAATA----TGTTTTT--TCCTTGCGCTAAGAACCCTTGAGATCTACTCTCTTTGCAACGTTCAGATACGCCA CACAGCAGAGCTAATTATAGTCATCATG-TGCACATCACATCCCTGGGACTTACCT------TCTAACTGGAAGTTTGTA CCTTTTAACCACTTGTGTCCAA-----------------TTCTCCTTTGATTCC---TTTCTTTAATTTTT-CAACAGTC ATAAACGGGG----AGCCACACCCACTCAGGA >Manis_pentadactyla TTGTTACCATGTCCCT---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --GAGGAATTTTGA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------TTTTCTACTTATGAATAAATATCTC--AAA---TCTCTA---TTTTTGC----------AGATTTATT GAGATAAAATTGACAGAG-AGCACTGTGTAAGTTTAAGGTCTCCAACATAATGATTTGGCT-TATGTATA---------- ---------------------------------------------TTGTAAAAAGATTACCAAAGTAAATTTAGTTAAT- -ATCCATCATATTGTATAGGTATAAA-----------------------------------------------AAAGGAA AGAGAAAAAATG----TGTTTTCTTTCTTTGTGATGAGAACCCTTAAAATCTATT--------AACTTTC--ATATACCA CACAGCAATGCTAACTATAA-CATCATCTTGCACATTACCTCCCTTGAACTTACGTATCT--TATAACCAGAAGCTTGTA ACTTTTGGCCTCCTTTGTCTAA-----------------TTTTTTTTCTATTCC---CTTCTTTAATTTTC-TAAAAGTC TTAAACTTTG----AACCACAACTATTCATGA >Sus_scrofa TTGTTACTGTTTGCCTAAAGAATTTTGATTTTCCTGTGGTTGCCAAGGAGGAGGGGAAGGGAGTGGGATTCATTGGGAGC TTGGGGTTAATAGAAAACTATTGCCTTTGGAAAGGATAAGCAATGAGATCCTGCTGTATAGCACTGGGAACTATACCTAG TCACTTACCATGGAGCATGATAATGTGAGAAAAAGAATGTATATGTGTATGTGTGACTGGGTCACCTTGCTGTACAACAG AAAATTGACAGAACATTGTAAACCAGCTATGATGGAAAAAATAGAAATCACTAAAAAGATAAATAAAAAACACTGAAAAA AAAAAGAATTTTGA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------TTTTCCATTTGTGAGTAAATACCTT-AAAT---CTCTTTT--TTTCCCC----------AGGGTTATT GAGATATAGTTGACATAT-AGCATTGTGTAAGTTT--------------AATGAATTGACT-TACAAATA---------- ---------------------------------------------TTGAGAAACGACTACCACAATAAGTTTAGTTAAC- -AGCCATCATCTCGAATAGATACCAAC--------------------------CACTCCCCCC----------------- -----AAAAAAG----CGTTTAT--TCATTGTGATGAGAACCCTTAGAATTTACTCTC-----AACTTTCAAATATACTG TACAGCAGTGC-AACAATAGTCTTCATGTTGTA-ATTACATGTCTAGTCCTTATTTATAT--TATAACTGCAAGTTTGTA CCTTTTGACTACCTTCATCAAA-----------------TTC---------------TTCCTTCAATTTTC-TAAACATC TTAAACTGTG----AACCAGAACCATTCACAA >Bos_taurus TTGTTATCACATGGCT---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --GAAGAACTTTGA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------TTTTCCATGTATGAATAAATAACTT-AAAA---TTTTCTT--TTCCCCC----------AGTTTTATT CAGATATAGTTAACATAC-AGCAC----TAAGTTT---------TTTAAAAAAAATTTACT-TACAAATA---------- ---------------------------------------------TTGTGAAATGATTAACACAATAAGTTTAGTTAAC- -ATCCATTATCTCATGTAGATATCCC------------------------------------------------------ ---TCAAAGAAG----CTTTTTT--CCCTTGTGATGAGAACTCCTAGGATTTACTTTCTGGACAACTTTCAAATATAACA TACGGCAGTGC-AACTACAGTCTTCATGTTGTA-ACTATATTTCTAGTACTTATT-------TATAACT----------- --TTTTGACTACCTTTATCCAA-----------------TTCTCTTTTTATTCC---TTTCTTTAATTTTC-TAAATGTC TAAAACTGTG----AATCACAACTATTTATGA >Equus_caballus TTGCTACCACGTGCCT---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --GAAGAA------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TTTCCGTTTATGAATAAATACCTT-AAAA---TCTCTT---TTTTCCC----------AGTTTTATG GAGATATAATTGACACAC-ACTGCTG--CAAGTTTAAGGCGTGCGGCATAATGACTTGCCT-TACACACA---------- ---------------------------------------------CTGTAAAATGGTTACCACGAAAGGTTTAGCTGAC- -ATCCGTCATCTCACATAGATACGAA-----------------------------------------------AAGAGAA AAGGAGAAAAAG----GTTTTTC--TCTTTGTGAGGAGAGCTGTTAGGATCTGCTCTCTCAACAACTTTCCCATTTACTA TAGCTCAGTGTTAAC--TAGTCATCATGCTGGGCATCACATCCCCAGTACTAATTTATCC--CGTAACTGGAAGTTTGTA CCTTTCAGCAACCTTCATCCAT-----------------TTCTCTTTGTATTCC---TTTTTTAAATTTTC-TGAAAGTC TTAAACTGTG----GGCCACTACCATGCATGG >Ceratotherium_simum TTGCTACCAAGTGCCT---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --GAAGAA------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TTTCCATTTATGAATAAATACCTC-AAAA---TCTCT----TTTTTCA----------AGTTTTATG AAGATGTAATTGGCATAC-AGCACTG--TAAGTTTAAGGTGTACGGTGTAACGACTTGACT-TACAGATA---------- ---------------------------------------------CTGTGAAATGATTACCACAATAGATTTAGTTGCC- -ATCCATCATCTCATATAGATACAAA-----------------------------------------------AAAAGAC AAAGAAAAAAAA----AATTTTC--TCCTTGTGATGAGAACTCTTAGGATCTGCTGTCTTAACAACTTTCCTGTGGATCA TACAGTAGTGTTAA-TGTAGTCCTCATGCTGTACATCACATCCCCAGTACTAACTCATCT--CATAACTGGAAGTTTGTA CCTTTTGACCTCTTTCATCCAC-----------------TTCTCTTTTTATTCC---TTTTTTTAATTTTG-TAAAAGTC TTAAACTGTG----AACTACAACTATGCATGG >Myotis_myotis TTGTTACCATGTGCCT---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --GAAGAGTTTTGA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------TTTTCCATTTATGAATAAATACCTGAAAAA---TCTCTTTTTTTTTTCT----------GGGTTTCTT AAGCTATAATGGACATAT-AGCACTGTGTAAGTTTAAGGTGTAAGGCATAATAATTTGACT-TACATATA---------- ---------------------------------------------CTGTGAAATGATTACCAAAATAAATTTAGTTAAC- -ATTTATCACATCCTATAGATACAAA---------------------------------------------------GAA AAGAAAAAGAAT----TTGTTTTCCTCCTTGTAATGAGTACTCTTA-GATTTACT--CTTAACAACTTTCAAATATGTCA CACAGCAGTGTTAAATATAGCCATCATGTTGTACATTACATCCCCATGACT-----------TATAACCAGAAATTTGTA TCTTTTGACCACCTTCATCGTA-----------------TTCTCTTTGTGTTCC---CTCCTTTACCTTTC-TGACACTC ATAAACTGTG----AACCACAGCTATTCATGA >Rousettus_aegyptiacus TTGTTACCATGTGCCT---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --GAAGAATTTTGA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------TTTTCCATGTGTAAATAAATACCTT-TAAA---TCTCTT---TTTT-CC----------AGTTTTCCT GAACTGTAATGGACATAC-AGCACTGTTTAAGTTTAAGATACACAGCATAATGATTTGACT-TACATATATTAAGGCAAA AGATTTATACAATCCAAAGAAAAACCAGAGCATGACTTACATATTTTGTGAAGTGATTACCAAAATAAATTTAGTTAAC- -ATTTATCATGTCATATAGATATAAA----------------------------------------------AAAAAGAA AAAGAAAAAAAA----TATTTTT--TCCTTGAAATGAGAACTTTTAAGATCTGCCCTCTTAATGTCTTTCAAATATAGCT CACGGCAGTGTTAACGACAGCCACCACATTATACATTACATCCCT-GCACTTATTTGTCT--TATAACCGGATGTTTGTG CCTTTTGACCATCTTCATCTAA-----------------TTCTCTTTGTATTCC---CTCCTTTAATTCTC-TAAAAATC TTAAACTGTG----AACCACATCGAGTCATGA >Condylura_cristata CTGTTACATTGTACCT---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --GAAGAATGTGAA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------TATTTCATTTATGAACAGTTATCTT-AAAA---TTGCCT---TTATGTC------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------TGTCTTCAATTTTC-TAAAACTC TTCAAATGGG----AATCAAGG---TTCCTGG >Erinaceus_europaeus TTGTTAC-ATGTGCTT---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --AAATAATTTGAAT----------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------TTTTCCATTTATAAAAAAATACTTT-AAAA---CACCTTT--TTGTACC------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------TATCTTTAATTTTCTTAAAACTC TTAAAATGT-----AACCACAACTATTCATAA >Homo_sapiens CTGTTGGCACGTGCCT---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --GAAGAATTTTGA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------TTTTGCATTTTTGAATAAATGGCTT-AACA---TCCCTTT--TTATTCC------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------TATCTTTAACTTTC-TAACAATC TTAAACTGTG--------ACCACTATTCATGA Bat141_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------AAAATGGTA ACTATGTGAGGTGATGGATATGTTAAT---TAGCTTGATTGTGGTAATCATTTCACAATGTATAC--------------- -GTATATCAAAACA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA -------------------------------------------------------------------------------- --------- >Canis_familiaris TGT------CTTTTTTAATGATAATAACTTTC------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------TTAAAATCTTGGAAAGCATGGCTT----TAA---AAAA-----ACAAGTT------------ ------GGCAGTGACAGATGT--TACC---TAGACTTTCTG-GGTGATCCTTTCATAATATATAC--------------- -AAATACTGAATCA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TTATGTTGTACATCTGAAACTAATACAA-TACTATAAGTC---TGTATCTCA-ATTTTTTTAAAAGG ---GGGGAGGTT---AG----GTAAATCCTCAAGCAAATGTCCCTGTGCTTCTGGCGCAGCT--GAGTCTCATCCCC--T AGAACCATC >Felis_catus CGTAT-----TTTTCTAATTAGAATAACTTGCCTGTTTTTAATGTATATTTTGAGAGAGAGAGAAAGAGAGAGAGAGAGA GACAGTGCAAGTTGGGGAGGGGCAGAGAGGGAAAGAGAGAATCCCAAGCAGGCTCCACATTTTCAGTGCAGAGCCTGATG TGGGGCTCGATCCCACGAACCCTGAGATCATGACCTGAACTGAGATCAAGAGTCAGACGCTTAACCGACTGAGCCACCCA GGGGCCCTGAGAATAACTTTAATATCTTAGAAAGCTTGGCTT----AAA---AAAA----AAAATGTT------------ ------AGCAGTGA------------C---TAGACTTTGTG-AGTCATCGCTTTGCAATATATAC--------------- -AAATATCCAATCATGGGGCGCCTGGGTGGCTCAGTCGGTTGGGCGTCCGACTTCGGCTCAGGTCATGATCTCGCGGTCC GTGAGTTCGAGCCCCGCATCGGGCTCTGTGCTGCCAGCTCAGAGCCCGGAGCCTGCTTCGGATTCTGTGTCTCCCTCTCT TTCTGCCCCTCCCCTGCTCATGTTCTGTCTCTCTCTGTCTCAAAAATAAATAAAAACATTAAAAAAATTAAAAACAAAAC AAATATCCAATCGTTACGTTGTACACCTGAAACTAAGACGA-TGTGATATGTC---TGTATCTCA-ATTAAAAACAAGAG ---AAAAAAGTT---GG----GTAAATCCTCCAGCAAATGTCCACGTACTTCCAGCACAGCT----GTCTCATCCCC-TT AGAACCATC >Manis_pentadactyla TGTACTTA-CTTTTCTCACGGGAATAGCATTC------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------TTAAAATCCTGGAA-GCATGACTT----TAA---AAAA-----------A------------ ------GTTGGTGTTAGATGT--TAAC---TAGACTTGGGGTGGTGAATATATACATATATATACTCGAATATATATTCG AATATATCGAATCA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------CTATGTTTTATAACTGAAAGTAATGTAA-TGTTATGTATCAATAATACCCCA-AT------------ ---AAAAAAAAT---GG----ATAAATCTTCAAGTAACTGGCCATTTACC-CTGGCTCAGCT--------CATCTCCATT AGAACCATC >Sus_scrofa TGTCTTCGGCTT------------TAACTTTC------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------TTAAAATCTTGGAAAGCGTGGCTT----GAA---AAAA---------CTT------------ ------GGCAGGGACAGGTGG--TAACAGGTAGAATTACGGTGGTAATCATTTTTCAATAGAGGC--------------- -GGATACTGAATCA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TTCTGCCGAACACCTGAAACATACGCAA-TGTTATATGTCAATCACATCTCACGTTTTGTTTTGTTT ---GGTTAAGTT---GG----GTAAATCCTCAAGCAAATGCCCACTCACCTCTGGCCCAGGTCTGAGTCTCATTCCTTTT AGAATCATC >Tursiops_truncatus TGTATTTGACTTTCCCAATGGGAATAACTTTC------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------TTAAAATCTTGGAAAGCGTGGCTT----AAA---AATG----------GT------------ ------GGCTCTGATGGGTAT--TAAC---TAGACTTATTGTGGTGATCTTTTTGCAGTATATGC--------------- -AAATATCGAATCT------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TTATGTCGTACACCTAAAACTAATGCAA-TATTATATGTCAATTATATCTCA-ATTTTATTTTT--- ---AAG----TT---GG----GTAAACCCTCAAGCAAATGTCCATTCACAACTGGCTCAGCTCTGAGTCTCATTCCCTTT AGAACAATC >Equus_caballus TGTATCTGGCTATTCTAATGGAAATAACTTTC------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------TTAAAATCTTGGAAACCAAAGTTT----AAA---AAAA-------AAGTT------------ ------GTTGGTGAAGGATGT--TATC---TAGACTT---GTTGAGATCATTTCACAACATACAC--------------- -AAATATC-AATCA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TTATGTTGCACACCTAAAACTAATATAA-CGTTA---------TATATCTCA-AAAGA--------- ---AGAAAAGTT---GA----GTAAATCCCCAAGTGAATGTCCATTTACCTCTGGCTCAGCCCTGAGTCTGATCAGCTTT AGAACCCTC >Ceratotherium_simum TGTATCTGGCTTTTCCAATGGAAATAGCTTTC------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------TTAAAATCTTGGAAAGCATAGGTT----AAA---AAAA--------AGTT------------ ------GGTGGTGAAGGATGT--TAAC---TAAAGTT------GTGATTATTTCACAATATATAC--------------- -GAATATCAAATCA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TTATGTTGTACACCTAAAACTAATATAA--------TGTCAATTATATCTCA-ATTAAAA------- ---AAAAATGTT---GA----ATAAATCCCCAAGTAAATGTCCATTTACATCCGGCTCAGCTCTGAGTTTCGTCCCCTTT ACAGCCATC >Myotis_myotis TGTATTTGGCTCTTCTAATGAAAATAACTTTC------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------TTAAAATCTTGGAAGGCACGGCTT----AAA---AACA---------CTT------------ ------GGCAGTAATGGATGTGACCAC---TGTGTATATTGTGGTAATAATTTCACAGTATACAC--------------- -AGTTATCAGATCA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TTATGTTGTACACCTGAAACTAATATAA------TATGTCAATTACTTATCT-TTTT---------- ---AAG----TT---GG----GTAAGTACTCAAGTAAATGTCTATTTACCTCTGGCTCAGCTGTGAGCCTCATCCCCTTT AAAACCATC >Rousettus_aegyptiacus TATATTTGGCTCTTCTAATGGGAATAACTTCC------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------TTAAAATCTTGGAA-GCGTGACTT----AAG---AAAA---------GTT------------ ------GGCAGCAGGGAATGT--TGAC---TAGACTTCTTGTGGTGGTCATTTCACAACATGTAC--------------- -AAACATCAAGTCA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TTATGTCATAGACCTACAACCAACATAA-TGTTATACGTCGATTATATCTCA-ATTTTTTTT----- ---TAAAGAATT---GG----GTAGGTCCTCAAGGAAATATCTGTTTACCTCTGACTCG--------------------- ----CCATC >Condylura_cristata CATACTTGGATTTT----------TAACT--C------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------TTAAAATTTTAGAAAGTGTGGTATACAAAAA---AATCACTGAAA---TT------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------ACCACTACAGTTCTTCAAGTTCACGTCCATTTACCTCTGGTTCAGCTCTAAATCTCATC------ ----CCATT >Uropsilus_gracilis TGTACTTGGATTTTTAAAAGG-AATAACTTTC------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------TTAAAATTTTGGAAATCATGATATACCAAAA---AGT-GTTGAAC---TT------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------ACCAACACAATTCTTCAAGTAAATGTTTATTCATCTCTGGTTTAGCTCTGAATCTCATC------ ----CAGTC >Homo_sapiens TATATTTGGCTTTTCTAATGGGAATGACTTTC------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------TTAAAGTCTTGGAAAGCATGGTTTCAAAAAA---AAAAAAAGTCAGACTT------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------ACTGCCACTGTTCTTCAAGTAAACCTCCATTCACC-CCAGCTCAGCTGTGAGTC---TCTCCTTT AGGACTGTC Bat143_LINE >L1MA9_3END ------------------------------------------------------------------------TTTTTCCA GCTTTATTGAGGTATAATTGACAAATAAA----AATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATATACGTAT ACATTGTGAAATGATTA-CCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTACCA------TTTTTTTGTG TGT--GGTGAGAACACTTAAGATCTACTCTCTTAGCAAATTTCAAGTATACAATACAGTATTATTAACTATAGTCACCAT GCTGTACATTAGATCTCCAGAACTT-ATTCATCCTGCATAACTGAAACTTTGTACCCTTTGACCAA-------------- ------------------------------------------------------------ >Canis_familiaris CACCCTGAATTAGTCAGACATTCTCTCTCAGCACATGACTTCTACCATAT---ATGCATCCATTGATAT-------ATTT TTTTAATTGAGATAGAATTGACATATAAC-----ACTGTATTCATTTCAGGTGTACAATTTAATGTTTCAATGTTTGTAT ATATTGTGAAATGATCA---------TGTCTCATTAAC--TTCTATCACTATACATGGTTACGATT--TTTTTCTCTTTT TGT--GTTGAGAACTTAGAAGAT-TAGCGTCGTAGCAATTTTCAAATATACGTTACAATATTCTTAACTGCAGTCACTAT GCTATACATTACATCCCTGGGACTT-GTTTATTTT--ATATCTGGAAGTTTG-----------------ATGCATCCATC TATTT---ATTGGATTCATATTCACTGGGTCCTAACTATCTTTT--GCTTAGGCTCATCA >Felis_catus CACCCTGAAGTAGTCA-ACATTCTCTCTCAGTGCAGGACTTCTCCCGTGT---ATGCACCCATTGATGT-------ATTT -TTTAATTGGCTTATAATTGACATAGAAC-----TCTGTATCAGTGTCAGGTGTACAACATCATGATTTAGTATTTGTCT ATATTGTGAAATGATAA---------TGTCTCATTAAT--ATCTATCACAATACATGGTTACAATT--TTCTTTCTCTTT TGT--GTTGAGAACTTATAAGATCTAGTCTCTTGGCAA-TTTCAAATATACATTACAGTTTTATTAACTATAGTCATTAT GCTGTACATTACACTCCCAGGACTT-ATTTATTTT--ATAACTGGAAGTTTG------------------TGCATCAATA TATTT---ATTGGTTTCATATTCATTTGGTTGTAACTATCTTTG--GCTTACGCTTCTCC >Manis_pentadactyla CACCCTGAAGCAGTCA-ACATTCTCTCTCAAAACATGACTTCCTCCATGC---ATCAATCCACTTATTT-------ACTC CTTTAAATGAGATGTAATTGACATATAAC-----ATTATGTTAATTTCACATGTGTAATATAATGATTTGATATTTGTGT AT-CTGCAAGACAATCA-CCACAATAAGCATAGTTAAC--ATTTGTCACCATAC--GGTTACTATT--TTTTTCTCTTTT TGT-----GAGAACTCATCCCATCTACTCTTTTAGCAACTTTCAAATAGAAAGTACAGTATAATTAACTATAGTCACCAT GCTGTGCATTACATCCCCAAGACTT-ATTAATTTT--ATAACTGGAAGTTTG-----------------GGGCATCCATT AATTT---AATGGTTTCATATTCACCTGG----GCCTGTCTTTT--GCCTTGGCTTGTCA >Sus_scrofa TACTCCAAATTAGTTA-GCCTTCTCTCTCAAAGCCTGGTTTCCTCCATGG---ATGCACTCAATTATTT-------GTTT GTTTTATTGAGATACCACTGAGCAATAAC-----AGTATATTAGTTTCAGGGATATGACATGATGACTCA-TGTTTCTAG ATGTTGCAAAGTGATCA----CAGTAAGTCTAGTTAAC--ATCCCTCATCATACATAGTTACAAAATGTTTTTTTCTCTT TCTTTGATGAGAGCTTCAAATATCTACTCTC--AGAAACTTTCCCATATACAATATCGTATTATTAACTGTAGTCATCAT GCTGCACATTAGGTCCCCAGGATTT-ATTTATTTT--ATAACTGGAAGTTTG-----------------CTGCACCCATT TGTTT---ATGGGCTTCCTGTTCATTAGG----GCCTATCCTTT--GCTTCACCTTGGCA >Tursiops_truncatus ----------TAGTCA-ACATTCTCTCTCAAAGCACGGTTTCCTCCATGG---ATGCATTCACTTATTT-------ATTT ATTTTATTGAGATATAATTGACCTATAAC-----ATTATATTAGTTTCAGGTACACAACATAATGATTCA-TATTTCTAT ATATTGCAAAATGATCA-CAACTATAAGTCTAGTTAAC--GTCCATCATCGTACATAGTTACAATT--GTTTTCTCTTTT TGT--GATGA--ACCTTAAAGATCTACTCTCTTAGCGACTTTCAGTTATACAATACAGTGTTATTAACTATAGTCATCAT GCTGTACCTTATGTCCCCAGGACTTAATTTATTTT--ATAACTGGAAGTTGG-----------------GTGTATCCATT TGTTT---ATTGGCTTCATATTCCTTTGGGTCTGACTATCTCTT--GCTTTGCCTTGGTG >Equus_caballus CACCCTGAATTAGTCA-ACATTCTCTCTCAAAGCATGACTTCTTCCATGT---ATGCATCCATTTATTT-------ATTT -TTTTACTGAGATATAATTGACATATAACATACAATTATGTTAGTTTCAGGTATGCAATATAATGATTCAGTATTTGTAT ATATTGTGAAATGGCCT-CCACAATGGGTCTAGTTAAC--ATCTGTCACCATACGTACTTAAAAAA---TTGTGTGTGTG TGT--GATGAGAACTTTTGAGATCTACTCTCTTAACAACTTTCCAATATACAATATAGTATTATTAACTATAGTCACCAT AATGTACCTTACATCCCCAGGACTT-ATTTATTTT--GTAACTAGGAGTTCG-----------------ATGCATCCATT TATCT---ATTGGTTTCATAGTCAT-------TGACTAGCTTTT--GCTCTGTCTTGTCA >Ceratotherium_simum CACCCTGAATTAGTCA-ACATTCTCTCTCAAAGCATGACTTCTTCCATGT---ATGCATCTATTTGTTT----------- --TTTATTGAGATATAATTGACATGTAACATATAATTATGTTAGTTTCAGGTATACAACATAATGATTCAATATTTGTGT ATATGGCAAAACGATCA----CAATAAGTCTAGTTAAC--ATCCATCACCACACATAGTTACAAAA---TTGTGTGTGTG TGT--GATGAGAACTTTTAAGATCTACTCTTTTAGCCACTTTCCAATATACAATACAGTATTATTAACTATAGTCACCAT GCTATACGTTACATCCCCAGGACTT-ATTTATTTT--GTAACTGGAAGTTTG-----------------ATGCATCCATT TATTT---ATTGGTTTCATATTCATT-------GACTAGCTTGT--GCTTTGTCTTGTCA >Myotis_myotis CACCCTGACTTAGTCA-ACATTTCCTCTCCAAGTATGACTCCCTCTATTC---ATTCAT-------TTT----------- -TTAAATTGAGATATAATTGACATATAAC-----ATTATATTAGTTTCAGGTGTACAACATAATGTTTCAATATTTGTAT ATATTACAAAATGATCACCCATAATGAGTCTAATTAAC--CTCCATCACCACATATAGTGACGAAA---TTCTGTGTGTG TGTAAGATGAGGACTTTTAAGATCTAATCTCTTAGCAACTTTCAAATGTACAATACAGTAAAGTTAACTACAGTTACTAC GCTTTACATTTATCCTCCAGGAC---ATGTATTTA--ATGACTGGAAGTTCA-----------------ATTCATCCATT TATTT---GTTGGTTTTGTATTCACTTGG----GCCTGTCTTTT--GCTTTGGCTTGTCC >Rousettus_aegyptiacus CACCCTGACTTAGTCA-ACATTTTCTCTCAGAGTGTGATTTCCTCCATGT---ATGCATTCATTCACTT----------- -TTTTATTAAGATATAATTGACATATAAC-----TTTATATTAGTTTCAGATGGACAACATAATGATTCAATATTTGTAT ATATTGCTAAATAATCA-CCATAATGAGTCTAATTAAC--ATTCATCGCCGCACATAGTTAACGAA--ATTT----TGCA TGT--GATGAGAACTTTTAAGATCTACTCTCTTAGCAACTTTCCAATATATGATACA---TTATTAACTGTAGTCACAAT GATGTACATTTGATTGCCAGG-------------------ACTGGAAGTTTG-----------------ATATATCCATT TACTT---ATTGGCTTCCTATTTTTTG-----TGTCTATCTTTT--GATTTGGCTTGCCA >Condylura_cristata CACCCAGAATTCATCA--AATTTTCTCTCAAAGCATAAATGTC-CTATAG------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------AATCACCCATT TATTT---ACTGTTTTCATATTCATTTGGAGCTAAATGTCATTT--GCTTTGGCTTGTCA >Erinaceus_europaeus CAA--TATATTTGTCA-CTGTTTTCTCTCAGAGCACAACTTCCTCTATGT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------TTATATCTACT CACTT---ATTGATTTTGTATTCTTCTGGTCCTAGAGATCCAAGAAGCTCTGGCTTCATG >Homo_sapiens CACCCTGAATTCCTCA-ATCTTCCCTCTCAAAGTATGACTCCTTCCACGT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------ATCCATCCATT TATTG---ATTGGTTTTCTATTCATTTGGCC--------CTTTT--GTTGTGTCTTGACA Bat146_LINE >L1MA9_3END ---------------------------------------------------------------------------TTTTT CCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGAT-ATACGTAT ACATTGTGAAATGATTACCACAATCAAGCTAA------------TTAACATATCCATCACCTCACATAGTTACCATTTTT TTGTGTGTGGTGAGAACAC-TTAAGATCTACTCTCTTAGCAAATTTCAAGTATACAATACAGTATTATTAACTATAGTCA CCA----------------------------------------------------------------------------- ---------- >Canis_familiaris TCTTTCCAGCCATACAAGATTATT-GTAATGATTGAAAGAGGTCATGTATG---TAGAAGCACTTTTT------------ -ATTTTTTATTGGGATATGTTCAACATATA-GTGTTGTATAAATTTAAGGTGTACCACATGTTGATTTGAT-TCATTGAA AT-TTGGAACATGATGGCTCTTGTAGCAATAG------------T----ACTTCTATCACATCATATGAG---CATTTCT TTTTA---GGTAGAAATAA-TTAAGATAGTGTCTCTTAGCACATTTGAGGGTTCTCATGCAACATTGC------------ ------TAGAAGCACTTTTTTTT---AAACAGCAAAGAGATTTTAAAGGTGTATGGTAAT----------ACTCTTAT-- AAATCGA-TG >Felis_catus TCTTGACAGCCACGTGAGATTATT-GTAACGATTAAATGAGGTCATGTGTA---TAGAAACACTTTGC--------ATTT TATTTTTTATTGGGATATGTTTGACACACA-GCAGTGTATAAATTTAAGGTGTACAACACGTTGATTTGGT-ACGCGGAT AT-TTGGAACACGATTGCCATTGTAGCAGCAG------------TCAGCACCTCTGTCACGCCGTATGAGCGACATTCCT TTGCA-GTGGTTGGATTAA-TTGAGATCTTGTCTCCTAGCACGTTTGATGATTCTAATGCAACGTCGT------------ ------TAGAAGTAC---TTTTT---AAACAACAAGAGGATTTTAAAGGCGTGTGGTAAT----------ACTCTTAT-- AAATCGA-TG >Manis_javanica CCTTTCCAGCCACACAAGTTAATT-GTAATGA-TAAATGAGGTCATCTATG---TAGAAGCACT---T--------ATTT TATTTTTTATTGAAATACGTTTGGCATAAA-ACATTGTGGAAATTCCTGG--TACAACATGTTGGTTTGAT-ACATTTAT ATT----------ATTGCCATTGTAGTGGTAA------------TTAGCACCTCTGTCATGTCACATCAGTATCATTTCT TTTCA-GTGGTTGGAATAA-TTAAGACCTAGTCTCTCAGCAAAGTGGATGATTATAATACAACTCTGT------------ ------TG-------------TT---AG------AAGGGATTTTAAAGATGTATGGTTCTTACAGATGTAAATATTAT-A AAATTAT-TG >Sus_scrofa ACTCTCCCGCCCTGCAAGGTTATT-GCAGTGATTAAATGAGATCATGCATG---GAGAGGCACTTTTT--------ATTT TCTTTTTTATTGAAGTATGTTTGACCTAAA-GTATTGCATAAATTTAAGGCATATGACTTATTGATTTGAT-TCAACTGT ATACTGCAATGTGATTGCCATTGTAGGAGTAA------------TTA--ACTCCTATCACGCCACATAATTAACATTTCT TTTTA-GTGGTCGGAATAA-TTAAGGTCTAGTCTCTTAGCCTGTTTGATGATTGTAATGTAACGT--------------- ------T---AACAC---ATTTT---AAGCAGCAGAGGGATTTTAAAGATGTGTGGTAAG----------AGTCTTAT-A AAATTAA-CA >Bos_taurus TCTTTCCAGCCATGCAAGGCTATT-GTAATGATTAAACTAGGTCATGTATG---TTGAAGCACTTTTT------------ -ATTTTTTATTAAAATATATTTGACATGTG-GCATTGTATAAATTTAAGGTGTGTGACTT----ATTTGACACAGATTGT ATCTTATA-----ATTGTCATCATGGCAATAA------------TTAACTCCTCTGTCATGTCACATAATT-TCATTTCT TTTTG-GTGATTGGAATAATTTAAGATCTAGTCTCTTAGCAACTTTGATGATTGTAATAC--TGTTGT------------ ------TAGAAGCTC---TCGTT---AAGCAGCAGAGGGATTTTGAAGATGTATGGTAAT----------ATTCTTAT-A AAATTAAATG >Equus_caballus ACTTTCTGGCCACACAAGATTATT-GTAATGATTAAATGAGGTTATGTATG---TAGAAGCACTATTT---ATTTTCTTT TATTTTCTATTAAAATACATTTGACATATA-AC---ATGTAAATTTAAGGTGTACAATACGTTGATTTGAT-ACATTTAT ATATTGTAAT---ATTGCTGTTGTTGCAATAA------------TTAGCACCTCTGTCACATCACATAATTATCGTTTCT TTTTA-GTGGTTGGAATAC-TTCATATCTAGTCTCTTACCAAGTTTCATGATTATAGCACAATATTGTT---T------- ------TAGAAGCAG---CTTTT---AAACAGCAAAAGGATTTTAAAGGT-----GTAAT----------ATTCTTAT-A AAATTGG-TG >Ceratotherium_simum TTTTTCCAGCCACACAAGATTATT-ATAATGATTAAAGGAGGTCATATATG---AAGAAGCACTTCTA---------TTT TATTTTTTATTAAAATATATTTGACATAAA-ACGTTATGTAAATTTAAGGTGTACAACATGTTGATTTGAT-ACATTTAT AAATTGTAATATGATTGTTATTGTTGCGATAA------------TTAGCACCTTTGTCATGTCAGGTAATTGTCATTTCT TTTTA-GTGATTGGAATAC-TTAAGATCTAGTCTCTTAGCAAGTTTGATGATTATAATACAATATTGTT---T------- ------TAGAAGCAC---TTTTT---AAACAGCAAAAGGACTTTAAACATGTATGGTAAT----------ATTCTTTT-A AAATTGA-CA >Myotis_myotis TCTTTCCAGCCACCCAAGGTCATT-GTAATGGTTAACTGAGGTCATGTATG---TAGAAGCACTTTTA------------ -TTTTTTCATTGAAATATATTTGACATATA-GCATTGTGCAAGTTTAAGGTGTATAACCTGTTGTTCTGATAACATTTAC ATATTGTAAT---ATTGCTGTTGTAACA----------------TAAGCACCTCTATCATGTCACGTAATTGC---TTTG TTTTA-GTGGTTGGAATAA-TTAATATCTAGTCTCTTAGCAACTTTGATGATTATAATATGATATTATTAAAA------- ------GAGAAGCAC---TTTCT---AAACAACA----GATTTTAAAGATCTATGGTAAT----------AGAATTAT-A AAATTGA-CA >Rousettus_aegyptiacus TCTTTCCAGCCACCCAAGATTGTT-TTAATGATTAAATGAGTCCATGTGTG---TAGAAGCACTTTAT------------ ------------------ATTTGACATATA-ACATTGTGTAAATTTAAGGTGTACAGCCTGTCGATTTGAT-ATATTTAT ATATTATAATGTGATTGCCGTTGTAACAATAACTAGCACCTCAGCTAGCACCTCTGTCATATCACGTAATTGTCATTTCT TTTCA-GTGGTTGGAATAA-TTAATATCTAGTCTC--AGCAAGTTTAGTGATTATAAAAC--TATTGTT--GT------- ------TAGAAGCAC---TTTTT---AAACAGCTAAAGGATTTCAAAGATATATGATTAT----------ATTCTTAT-A AAATTGA-CA >Condylura_cristata TCTTT--AGCCACACAAGATTATTGGTGACGGTTAAATGAAGTCGTGTATT----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------TAGAAGCAC---TTTTT---AAACAGCAAAGGGGTTTTAAAGATGTGTGGAAAT----------A--CTTAC-A AAATTAC-TG >Sorex_araneus TC-TTCCCGACAC-----GTCGTA-TCAATGGTTAAATGATGTCTGGTATG----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------TAGATATGC---T-CA----ACATTGAAGGGGGTTTT---AGAAGCATGGTAAT--------------TGATGA AAACTGT-TG >Homo_sapiens TCTTTCCAGCCACATGAGATTATT-GCAATGATTAAATGAGGTCATAAATG----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------TAGAAGCAC---TTTTT---ACACAGCGAAGTTATTTTAAAGAT-----GTAGT----------ATTCTTAT-G AAAATGA-CG Bat147_LINE >L1MA9_3END -------------------------------------------------------------------------------- ----------TATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACAC CTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------- >Canis_familiaris CCATC--TGTCTGATGCT-----CCGAACCTTCC--TGTATCATCTCCCATAGCACTATT-AGTATCT------------ -------------------------------------------------------------------TTAAGTGGTGCAC CTGAAACTAATAC---------ATGTCCATTATACCTCAACTTAAAAAAAAAAAAAAAACTTTTTAAGAAATGCATTTGA GGGGCAGCCCGGGTGGCTCAGTGGTTTTGTGCCTGCCTTCAGCCCAGGGCCTGATCCTAGAGCCCCAGGATCGAGTCCTA CATCCTACGTTGGGCTCCCTGTATGGAGCCTGCTTCTCCCTCTGCCTGTGTCTCTGCCTCTCTCTCTCTGTTTCTCATGA ATAAATAAATAAAATATTTTTAA---AAA------TG---CATTTGAG-TATTATGTAT-CAACACTGTAATACGTACAG GAACATGT-ACTGA >Felis_catus CCATCTCTGTCCGATGCC-----CCTAACCTTCCTATATATAATCTCTGACAGCACTATACGGTACCT------------ -------------------------------------------------------------------TTATGTTATACAC CGGAAACTGATAC---------ATGTCAATTATATCTCAATTT--------TAAGAAACTTTTTC--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------AAAA---AGTG---TATTTGAG-TATTATTGATCCAACACTGTAGTACGTACAG GAACAC---AAGGA >Manis_javanica TCATCT----CTGATGCT-----ACTAACCTTCA--TTTATAATCTCCCACAGCATTAT--AGTCTCT---GGC-----A TGAAAT------------------------AAGTG---ATTTCATAATATATACAAATACAGAATCATTAAGTTGTATAC CTAAAACTATTT-----------TATAGATTACACCTCAAATT--------AAAAAAATTTT------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------AAG------TG---TATTTGAG-TATTATGTATCCAACACTACAATACGTATAG GAATATGT-AATGA >Sus_scrofa CCATTT----CTGATGCT--------AACCTTCC--TTTAAAAGCCCCCACAGCACTATACAGTCTCT---AAT-----A CA----------------------------AAGTGATCATTTTACAATGTATACAAATGTCAAATTGTT--GTTGTACAC CTGAAACTAATGTTC------CATGTCAAATATAACTAAATTT------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------AAAGA--AGTG------------TATTATGTATCCAACATTGTATTATGTCTAA GAACATGT-AATAA >Tursiops_truncatus CCATCT----CTGATGCT-----ACTAACCTTCC--TTTAAAATCTCCCACAGCACTGTACAGTCTCT---AAT-----A CCAAATA-----------------------AAGGGATCATTTCACAATATATACAAATATCACATTATTATGTTGTACAT CTGAAACTGTTAC---------ATGTCAATTATACCTCAATTT------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------AAAAAANNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNN >Equus_caballus CCATCT----CTGATGCT-----ACTAACCTTCC--TTTATAATTTCCCACAGTACTTTACAGTCTCT---AGA-----A CAAAATC-----------------------AAGTGATCATTTCACAATATATACAAATATCAAATCATTATGTTGTATAC CTGAAACTAATA-----------TGTCAATTATACCTCAATTTTTTTTTT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------AA-----AGTC---CATTTGAG-TATTATGTAGCCATCACCATAATATGTATAG AAACAAGT-AATGG >Ceratotherium_simum CCACCT----CTGA----------------TTTC--TTTATAATTTCCCATAGCAGCATACAGTCTCT---AGT-----A CAAAATA-----------------------AAGTGATCATTTCACAATATATATAAATATCCAATCATTACACTGTACGC CTGAAACTAATACGT------TGTGTCAGTTATACCTGAATTTTTTTT-------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------A------AGT----TATATGAG-TGTTATGTATCCAACACTGTAAAATGTATGG AAACATGT-AATGA >Myotis_myotis CCATCT----CTAATGCT-----AGTAAGCTTCC--TTGAT-ATCCCCCACAGCACTATATAGTCTGT---AGT-----A CAAAATA-----------------------AAATGATCATTTCACAATATGTACAAATAATGAATCATTATGTTGGACAC CTGAAGCAAATATAA-TGTTACATTTCAATTATAGCTCAATAAAAATATAA----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------AAAATAAAGTA---TATTTGAG-TATTATGTATGCAGCACTATAATATGCATAG GAACATGT-GATGA >Rousettus_aegyptiacus CCATCT----CTGATGCT-----ATTAAGCTTCC--TTTATAATCTCCCACAGCGCTACACAGTCTGT---AGT-----A CAAATTA-----------------------AAGTGATCACTTTGTAATACCTACAAATACTGAATCATTAT-TTGTATAC ATGAAACTAATATAA-TGTTACCTGTCAATTATACCTCAATAAA------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------AAAATTAAAAG---GATTTGAG-TATTAC--ATGCAGCATTGTAACATGCATAG GAACGTGT-AATGA >Condylura_cristata CCATCT----CTGATCATCTCTGACTACCCTCCT--CTTATAATCTCC--CAGCACTATACAGTCTCT---AGGACAAAG CAAAGTA------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------TATTTGAA-AACCATGTCTTCAATACTGTAACACATATAG GAACATGT--GTGA >Erinaceus_europaeus CCATCT----CTGAAGCT-----ACTAACCTTCC--TTTAC-ATTTCCCATCGTACTACATAGTCTCC---AGT-----A CAA--CA------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------C-TTTGCA-TATGATGTATACAACACTGCAATATATAG-- ---------AATGG >Homo_sapiens CCATCT----CTGAGGCT-----ACTAACC------TTTGTAAGCTCCCACAGCATTATGCAATTGCT---AGC-----T CAAAGTG------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------TACTTGAACTAGCAACACTCCAACACTGTTCTACGTATAG GAAGATACAAATGA Bat149_LINE >L1MA9_3END -------------------------------------------------------------------------------- -----GTGGTTGCCAGGGGCTGGGGGGTG-----GGGGAAATGGGGAGATGTTGGTCAAAGGGTACAAAGT--------- ---TTCAGTTATGCAGGAT-GAATAAGTTCTGGAGATCTAATGTACAGC----ATGGTGACTATAGTTAATAATACTGTA TTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCACCACACACAAAAAAA-----TGGTAACTATGTG- AGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGT----------ATACGTATATCAAAACAT-C ACGTTG-----------------------------TACACCTTAAATATATACA-----------ATTTTTATTTGTCAA TTATACCTCAATAAAGCTGGAAAAA------------------------------------------------------- ------------------------------------------------- >Canis_familiaris TTT-CTTATGTTATTGCATTAGCCAAAATTTACCCCAA-AAT-------AAATGTTTAT---AAAAATGATCAT-ACAGA GA-----------CAGGAGGTGAG--GTG-----GGAGAAGTGGGTGAA-GGATGTCAAAAGTTATAAACTAAATAACTA ATCTCTAGTTAT--AAAAT-AAATAACTTATGGGGATGCAATGTTCAAC----ATGGTGGAAATAGTTAATAATACTGTA TTGTGTATTT-------ACTAACAGAGTAAATCTGAAAAGTTCTCATCAGGAGGGGAAAAAA---TTTGTAACTGTAAAC AGATGATGG--------------------ATGGTGATCATTTTGAAATGT----------ATACAAATATTGAATCATGT TTGATG-------------------------------------CAACTAATATA-----------A-TGTTATATGTCAA TTATACCTCAGTAAAA-ATAAATTAAAA-------------ATAAATGGTCAT-AACTGAGA---GCTCTGTTTT----- ---------ACTCGTGATTGCTCATGAGAACCTTGAGTGATATTAGCTG >Felis_catus TTTCCTTCTGTTATTGCATTGGCCAGAATTTACCCCAA-TAT-------AAATGTTTAT---AAAAATGGCCAC-ACAGA GG-----------CAGGGGGTGGG-GATG-----GGAGAAATGGGTGAA-GGAGGTCAAAAGGTACAAACT--------- ---TCCAGCTAT--AAAAT-AAATAACTCACAGAGATGTGATGTTCAGC----ATGGTGACTCTAGTTAATAACACTGTA CTGTACATTTCAAAGTGGCCAAGAGAGTAAAGCTGAAAAGTTCTCATCGCAAGAAAATAATC-TTTTTGTAACTACGTA- AGGTGACGG--ATGTCAGCTGGACTTCCTGTG---ATCATTTTTAAATGT----------ATACAAATATCGAGTCAT-- --GTTA-----------------------------TACACCCGCAACTCATATA-----------A-TGTCATAGGTCAA TTATAGCTCAATAAAA-ACAAACTAAAA-------------ATAAATGGTCGT-AACCGAGA---CCTCTGTTTT----- ---------ACTCCTGATTGCCCATGAGAATCTTGAGTGATATTAGCTG >Manis_pentadactyla TTT-CTTGTGTTATGGTATTATCCAGAATCTACACCAA-----------AAATGTATAT---AAAAAAGGTCAT-AC--A GA----------------------------------------GGGTAAA-GTGGATCAAAAGTGAAAAATT--------- ----CCTGTTAT--AAAAT-AAGTAAGTCATGG-GATGTAATGTATAGC----ATGGTGAC----ATTACTAATACTATA TGGCAGATTTGAAAACTGCTAAGAGAATAAATCTTAAATGTTCTTATCACAGCAAAAAAA---TTTTTGTAACTGTATA- --GTGACAG--ATGTTAACTAGACTTACAGT--TGATCATTTTGCAGTAT----------ATACAAATTTCAAACCAT-T CCATTGTTTTGAAACCAATATTATATGTGTGATAATACATTATAAACTAATGTATAGTGTTATATGTTATAATATGTCAA TTATACCTTAATAAAAGAAATAACAAATAGA----------ATAAATGGTCAT-AACTGAGA---GCCCTGTTTT----- ---------TCTCTGTATAGCCCATGAGAATCTTGAGTGATATCGGCTG >Sus_scrofa TTT-CTTGTGTTATTGCATTAGCCAGAATTTAATCCCA-AAT-------AAATGCTTAT---GAAAATGGTCAT-ACATA GG-----------CAGGAGTGGCA--TTG-----GGAAAAGTGGGAAAA-GG-GGTCAAAATCT-CAAACT--------- ---TCCAATTAT--------AAGTAAATCCTGGATATGTGATG-GTGGCTGTAATGGTGATTATAGTTAGCAATGCTTTA TTGCATATTTGAAAATA----------------------------------------------TTTTTGCAACAA----- AGGCAGTGA--ATGTTAACTAGACTTATTGTGGTGCTCATTTTCCAGTGT----------ATACAAGTATTGAATCAT-T ATGCTA-----------------------------TA-ATCTGAAATTTA-----------------TGTTTTGTGTCAA TTATACATCAACAAAATTAAAATTAAAA-------------TTAAAAAGTTAT-----GAGA---GCCCCGTTTT----- ---------ACTTGTGACTGCCCA-GAAAATCTTGAGTGATATTAGTTG >Balaenoptera_acutorostrata TTT-CTTGTGTTAATGCATTAGCCAGAATTTACCCCAA-AAT-------AAATGCTTGT---GAAAACGGTCAT-ACGTA GG-----------TGGGGGGGGGGCGGTGATGTTGGGGAAATGGGTGAA-GGTGGCCGAAAGGTACAGACT--------- ---TCCAATTAA--AAAAT-AAATGTGTGCTGGGGATGTGATGTACAGC----CTGGTGACTATAGTTAATAATGCTGTA TTGCCGATTTGACATT-----------------------------------------------TTTTTGCATCTATGTA- AGGTGATGG--ATGTTCACTAGACTTATCGTGGTGATCATTTTGCAATAT----------ATACAAGTGTTGAATCAT-T ATGTTG-----------------------------TACACCTGAAACTAATACA-----------A-CGTTTTATGTCAA TTATGCTTCAATAAAATAATAAATAAGTAAAAATGAAA---GTAAATGGTTAT-AACTGAGA---GCCCCATTTT----- ---------GCTC--GATTGCCCA-GAAAATCTCGAGTGCTATTAGTTG >Equus_caballus CTT-CTTGTGTTATTGCATTAGCCAGAATTTACCCTAA-AAT-------AAATGTTTAT---AAAAATGACCAT-ACAGA GG-----------TGGGAGGTGGG--GTG-----GGAGAAATGAGTGAA-GG-GGTCGAAAGGTATCAAGT--------- ---GTCAGTTGT--AAAAT-TAGTAAATCCTAAGGATGTAATGTACAGT----GTGGTGACCATTGTTAGTAGTACTGTA GCATATATTTGAAAGTTGCTAAGAGAGTAGATCTTTGAAGTTCTCATTGCCAGAAAAAAAATTTTTTTGTAACTATGTG- TAATGATGG--ATGCTAACCAGACTTATTGTGGTTATCATTTCACAATGTACATTTTCACACACAAGTATCAAAATGT-T ACATTG-----------------------------CACAACTGAAACTAATATA-----------A-TGTTGTCTGTCAA TTATATCTCAATTAAAAAATAAGTAAAA-------------ATAA-----------ATGAGA---GC-CTGTTTT----- ---------ACTCCTGATTGCCTAGGAGAATCTTGAGTAATATTAGCTG >Ceratotherium_simum TTT-CTTGTGTTATTGCATTAGCCAGAATTTACCCCAA-AAT-------AAATGTTTAT---AAAAATGGTCAT-ACAGA GG-----------CAGGGGTGTGG-GGTG-----AGAGAAATGAGTGAA-GGGGGTC-AAAGGTAGAAAAT--------- ---TCTGGTTAT--AAAAT-AAATAAGTCCTAAGGAGGTAATGTACAGC----ATGGTGACCATAGTTAGTAATACTGTA TTGTATATTTGAAAGTTGCTAAGAGAGTAGATCTTAAAAGTTCTCATCACAAGAAAAAAAATTTTTTTATAACTATCTA- TAGTGATGG--ATATTAACCAGAGTTATTGTGGTTATCATTTCACAATGT----------ATACAAATATCAAATTGT-T ATGTTG-----------------------------CACACCTGAAACTAATATA-----------A-TGTTGTATGTCAA TTATATCTCAATTGAAAA-----------------------ATAAGCAGTTGT-AAATGAGA---GC-CTATTT------ ---------ACTCCTGATTGCCTATGAGAATCTTGAGTAATATTAGCTG >Myotis_myotis TTT-CTTGTGCTATTGCATTAGATAGAATTTACCCCAA-AAT-------AAATGTTGAT----AAAATGCTTAT-CCAGA AG-----------CAGGAATGGGA--GTG-----GGA-ATATGGGTGAA-GAGACTCAAAAGTTACAAACT--------- ---TCCAGTTAT--AAAATAAAATAAGTCATGGGGAGATAATGTATAGC----ATAGTGGCTACTATTAATAATACTGCA TTGTATATTTGAAAGTTGTTAAAAGAGTAAATCTTAAAAGATCTCAT----GTATGAAAAAATTTTTTGTCAGTGTGAT- AGGTGACAG--ATGGTAACTAGACTTATTGTGGTGATCATTCTACAATGT----------ATACAAATATTGAATCAT-T ATGTCA-------------------------------------AAATGAATATA-----------A----TATATGTCAA TTATACCTCAATAAAA-AGTAAATAAATAAA----------ATAAATGGTCATAAACCGAGA---GCCCTGTTTT----- ---------ATTTTTGATTGCCCACGAGAATCTT-AATGATATTAGCTG >Rousettus_aegyptiacus TTA-CTTGTGTTATTGCATTAGTCAGAATTTACCCAAA-AAT-------AAATGTTTAT---AAAAATAGTCAC-ACAAA GA-------------TGGGGTGGG--ATG-----GGAGAAATGGATAAA-GGGAGTCAAAAATTACAAACT--------- ---TTCAGTTAT--AAAAT-AAATAAATCATGAGGATCTAATGTACAGC----ATGGTGACTATTGCTAATAATACTTTA TTGCATATTTGAAAGTCGCTA--AGGGTAAATCTTAAAAGGTCTCATTGCAAGAAAAAAAT--GTTTTGTGACTGTGTA- AGTTGACAG--ATGGTAACTATACTTATTGTGATGATCAATACACAATAT----------ATACAAATATCGAATTAT-T ATGTCA-------------------------------------AAATTAATATA-----------A-TGTTATATGTCAA TTATACCGTAGTAAAAATAAAAATAAAAATA----------AAAAATGGTCAT-AACTGAGA---GCCTTCTTTA----- ---------ACTCTTGATTACCCATGAGAATCTTGAGTGATATTAACTG >Condylura_cristata TTT-CTCCTGTTACTGCATTAGCCACAATTTACCCCCAGAAT-------AAATACTCAT---AAAATCGGTCATTA-TGG GA------------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------GTCCTGCTTTTTTTT TTTTATGAGAGTCTTGATTGTCCATGGGAATCTTGAGTGATATTAGCTG >Solenodon_paradoxus TTT-CTTGTGTTATTGCATTAGCCACAATTTACCCAAA-AAT-------AAATGTTCAG---AAAATCAGTCATTATTAA GA------------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------CTCCTGTTTC----- ---------ACTCTTGATTTCCCATGTGAATCTTGAGTGAGATTAG-TG >Homo_sapiens TTT-CCTGTGTTATTGCATTTGCCAGAATTTACCAACA-AATGTTAAAAAAATATTCAT---AAAAACAGTCATAACTGA GA------------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------GTGCTGTTCT----- ---------GTTCTTGATTGCCCGTAAGAATCTCGAGTGAGGTCAGCTG Bat151_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGT-ATATA TTTAAGGTGTACAACGTGATGTT--------TTGAT--ATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATT AACATATCCATCACCTCACATAGTTACCATTTTTTTGTGTGT-----GGTGAGAACACTTAAGATCTACTCTCTTAGCAA ATTTCAAGTATACAATACAGTATTATTAACTATAGTCACCATGCTGTACATTA--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------- >Canis_familiaris CTTTTGTCTGTAGGGGGAAAAGAGGTATCTAAGGG---AAAAAGTCAGAAACTGAAGGAATCTGC---TATCTTGATCTA A--TTT---CTCTCT-----T--------AAAAATTTCAACTTGATCAAGGTATAATTGACAAAC-AAAGTTGTAAGATA TTTAAAGTGTACATCGTGGTAAT--------TTAAT--ATACATAAAAGTTGTGAAAGGATTTCTCCCATCCAGTTACTT AACACATCCATTACTTTACATATTCATCATTTTTTTCTTCT------GGTGAGAACACTTAAGTTCTACTTTCTTAGCAG ATTTCAATTATATGATACGGTGTTACTAATTACAGTTACCA---------------CATCTTGATCTAATTTCT---GAG AGACTGTTCTAAAATGTAAATCATATTATGCC------------------------------------------------ -------------------------------------------------------------------------------- -----------------------------------------------------ATGATTGAAA >Felis_catus CTTTTGTCTGT-GGGG-------------------------------GAAACTGAGAGGGTCGGC---TGCCTTGATCAA A--TTT---CTCTCT-----TTTTT----AAAAATTTCAGCTTGATTAAGGTGTAATTGACAAATAAAAATTGTAAGTTA TTTAAAGTGTACATCGTGGTAAT--------TTAT---ATACATA-ATATTGTAAAAGGATTTCTCCCATCCAGGTTATT AACACATCCATCACCTCACATATTTATCATTTTTTTTCTTTT-----AGTAAGAATACGTAATTTCTATTTTCTTAGCA- ----CAATTATACCATACTGTGTTATCAAGTATAATTACCA---------------TGTCTTGATCTAATTTCT---GAG AGATCTTTCTAAAATGTAAATCAGATTATGCCATTTCC------------------------------------------ -------------------------------------------------------------------------------- -----------------------------------------------------ATGATTGAAA >Manis_pentadactyla CTTTTGTCCTG-GGAGG---------------------GAAGAATCAGAAACTGAGGGAATCTGC---TGTCTTAATCTA A--ATT---CTCTCT-----TTTTT----AAAAAAATCAACTTCATTGAGGTACAATTGACAACT-------GTAAAATA TTCAAAGTGTACATCATGGTGAT--------TTTG---ATATCTAAATGTTATGAA------------ATATAGTTAATT AATACACCCATCGCCTCATGTACTTATCTTTTCTGTTTTTAATTT-TGGTGAGAACATTTAAGTTCTACTCTTTTAACAG ATTTCAGTTATACAATACAGTGTCATCAACTCTAGTCACCA---------------TGTATTTATCTAATTTCT---GAG GG----TTCTAAAATGTAAATCAAATTATGACATTTCC------------------------------------------ -------------------------------------------------------------------------------- -----------------------------------------------------ATGATTGAAA >Sus_scrofa CCCCTCCCCCC-GGGGGAAAAGAGGTATC--AGAG--AAAAAGATCAGGAAGTGCAGGA----CC---TGTCTTGACCTC A--TTT---CTCTCT-----TTTTT--CTTAATATTGCAGTTTGATTGAGGTATAATTGACAAAC-AACATTGTAAGATA TTTAAAATGTGCGTCAAGAAGAT--------TTAATCGATACCTAAACATTGTAAAAGGATTTCCCTCATCTAGTTAATG AACACATCCATCACCTCATACATCAATCTCTTTTTTTTTCTTTTT--GGTGAGAACATTTAAGTTTTACTCTTTTATCAG ATTTCGATCATACAATACCATGTTATCAACTACAGTCACTG---------------TGTCTTGATCTAATTTCT---GAG AGAAGTTCCTAAAATGTAAATCACATTGTGCTACTTTCTTTTAACTATTATTGAAGTGTAGTTGATTTACTAGGTTGTGA TAATTTCTACTGTACAACAAAGTGATTCAGTGATACATGTACACACATCTATTCTCTTTTAGATTGCTTTTCCACATAGA TTATCACAGAATAACGGGGACCTACTGTATAGCACAGGAATTGAGCCGCTTTGGTGACTAAAA >Tursiops_truncatus CTTTTGTCCTA-GGAGGAAAAGAGGTATC--AGAG--AAAAGAGTCAAGAAATGTGAGAGTTTGC---TGTCTTAATCTA A--TTT---CTCTCT-----TTTTTTCCTTAAAATTTCAGTTTGATTTAGGTATAATTGACAAAC-AACATTGCAAGATA TTTAAAGTGTGCATTGTGGAGAT--------TTAATCAATATCTAAACATTGTGAAGGGATTTCCCTCATCTAGTTAATT AACACATCTATCACCTCACATATTCGTCTTTTTTTTTTTTTTT----GGTGAGAACCTTTCAATTTTACTCTCTTAGCAG ATTTTAATTATAGAATACAGTGTTATAATCTATAGTCACTA---------------TGTCTTNNNNNNNNNNNN---NNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------------------------------------ -------------------------------------------------------------------------------- -----------------------------------------------------NNNNNNNNNN >Equus_caballus CTTTTGTCTTG-GGGGGCAGAGGGGCA--TGTGAG--GGAAGAGTTAGGAACTGAGGGTGTCTGC---TATCTTGATCCA A--CCT---CTCTCT-----TCTTT----AAAAAATTCAGCTTTATTGAGATACAATTGACAAAT-AAAATTGTAAGACA TTTAAAGCGTACATCGTGGTGAT--------TTGAT--ATACATATATATTGTGAAAGGATT-GCCCTGTTTAGTTAATT AATGCAACCATCACCTCACATATTTACCATATTTACCTTTTTTT---TATGAGAACATTTAAGTTCTACTCTCTTAGCAA ATTTCATATATACAATACAGTTTTATCGACTATAGTCACCA---------------TGTCCTGATCTAATTTCT---GAG AGATCTTCCTAAAATGTAAATCAAAGTATGCCACTTCC------------------------------------------ -------------------------------------------------------------------------------- -----------------------------------------------------AAGACTGAAA >Tapirus_indicus TTTTTGTCCCG-GGGAGAAGAGGAGCA--TGTGGG--GGGAGAGTCAGGAACTGAGAAAGTCTGC---TATCTTGATCTG A--TCT---CTCTTT-----TTTTT------AAATTTCAGGTTTATTGAGGTATAATTGACAAAT-AAAGTTGTAAGATA TTTAAAGTGTACATCGTGGTGAT--------TTG----ATACATATCTATTGTGAAAAGATT-CCCCCATTTAGTTAATT AACATATCCATCACCTCA--TAGTTATCTTTTTTTTTTTTTCT----GGTGAGAACATTTAAGTTCTGCTC--TTAGCAA ATTTCAATGATACAATACAGTGTTATCGACTGTAGTCACCA---------------TGTCTTGATCTA-TTTCT---GAG AGATTTTTCTAAAATGTAAATCAAATTATGCCACTTCC------------------------------------------ -------------------------------------------------------------------------------- -----------------------------------------------------GTGATTGAAA >Myotis_myotis CTTTTGTCCTG-AGGAAAAATGAAGTATCTGGGGGAAAAAAGAGTCAGGAAATGAAGGAGTCTGC---TGTTTTGATCAA A--GTT---CTCTCTCTCTCTCTCTCTTTTAAAAAATTAGCTTAATTGAGATATTAATGACAAAT-AAAATTATAAGACA TTTAAAGTGTACATTGTTGTGATTTGCTATATTGAT--ATATGTAAACATTGTGAAAGGATT--CCCCATCTAATTAATT AACACATCCCTCACCTCACATATTTATCTTTTTTGGGGGCGGGGGAAGGTGAGAACATTTAAGTTCTACTCTTTTAGCAG ATTTCAAATATATACCACAGTGTTATCAACTATGGTCACCA---------------TGTCTTGATCTAATTTCT---TAG AGATC-TTCTAAAATGTAAA-CAAATTATGCCACTTGC------------------------------------------ -------------------------------------------------------------------------------- -----------------------------------------------------AGGATTGAAA >Rousettus_aegyptiacus TTATTTTCCTA-GGAGGAAATGAGGTAAGTGGAGG--AAAAGAGTCAGGAA-------------C---TGTCTTG-TCTA A--TTT---TTCTTT-----TTAA-----AAAATTTTCAACTCGATTGAGAAATAATTGACAAAG-AAGATTGTAAGACG GTTAAAGTATACATTGTGGTGAT--------TTGAT--ATATGTAAACATTTTGAAAGGATT-CTCCCATCTAGTTAATT AACACATCCATCACCTCATATATCTACATATTTT---------------TGAGAACATTTAAGTTCTACTCTCTTAGCAG ATTTCAGTTATCTAATA--ATATTATCAACTATAGTTACCA---------------TGTCTTGGTCTAATTTCT---TAA AGATCTTTCTAAAATGTAAATCAAATTATGCCACCTCC------------------------------------------ -------------------------------------------------------------------------------- -----------------------------------------------------ATGATCGAAA >Condylura_cristata CTTTTGCCTGT-GAG----------------------AAAAGAGTCAGGAACTTA--GAGTCTTC---TGTCTT------ ---TCC-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------CAG AGAACTTTTAAAA---TAAGCCAAATTGTGGCACTCTC------------------------------------------ -------------------------------------------------------------------------------- -----------------------------------------------------GTGATCCAAA >Sorex_araneus CTTTTGTATCT-GAGTG--------------------AAAAGAGTCATGAACTGAGGAACTCTGC---TGTCTTGATTGA ATTTTT-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------GAG AGATCTTTC-AAAACATGAATCAAATCATATGACATCT------------------------------------------ -------------------------------------------------------------------------------- -----------------------------------------------------CTGAATGAGA >Homo_sapiens CTTT-GTCCCT-GGGGGAAAAGAGGTATTTG------GTAAGAGTCAGGAATTGACGGAGTCTGC---TGTCTTGATCGA A--TCT-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------GAG AGATCTTTAAAAAATGTGAATTAAACAATGCTGCTTCC------------------------------------------ -------------------------------------------------------------------------------- -----------------------------------------------------ATGACTGAAA Bat152_LINE >L1MA9_3END -------------------------------------------------------------------------------- -TTTTTCCAGCTTTATTGAGGTATAATTGACAA-ATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATAT ACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTACCATT-TTTTTGTG TGTGGTG-AGAACACTTAAGATCTACTCTCTTAGCAAATTTCAAGTATACAATAC------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------- >Canis_familiaris AGTGTTGTGCTGTGTTGTCTCTAATC----GACATTAGATTTTTTTCAGAATATCC---TTCAC--TTTATTTAT----- TTATTTA----TCCATTGAGATATAATCGACTT-------GTTATATTAGTTTTAGGTGTACAAC---ACGATTTGATAT ATGTCTATGTTGTGAAATGATCACCACAATAAGTCTAGTTAAT--ATCCATCACTATGCATAGTTAGAATT-TCTTTTCT TGTGATG-AGAACCTTTAAGATCTATTCTCTTAGCAATTTGCAA------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------TTTAC--ATT-GTTTTT---AAAATGTC-----------AACTAGAG-C TGTTTAATCTGTTCCCAGTCTTCCCATTTCTGAG >Felis_catus TGTGTTTTGGTATATTGTCTGTAACG----AACCTTAGA--TTTTTTAGAATATTC---TTCACTA--TATTTAT----- TGGTTTATTCATCAATTGAGATATAATTGACTT----------ATATTAGTTTTAGGTGTGCAACATGAGGATCTGATAT ATGTATATGTTGTGAAATGATCACCACAATAAGTCTGGTTACT--ATCCATCACTATGCATAGTTACATTT-TTTTTTCT TGTGATG-AGAACCTTT-AGGTCTGTTCTCTTAGCAACTTGCAACTCACGTTTGTTTTTTTCTTTTTAATGTTTATTTAT TTTTGAGGGGGGAAGGGGCAGAGAGAGAGGGAGACAGAATCTGAAGCAGGCTCCAGGCTCCCAGCTGTTAGCACAGAGCC CAATGCAGGGCTCCAACTCACTAACTGTGAGATCATGAGCTGAGCCAAAGTCTGACGCTTAACCAACTGAGCCACCCGGG CATCCAACACATTTTTTTAAATGTCTACTTATTTATTTTTGAAAGGGGCATAGAGGGGGTGGGGGAGACAGAGAATCACA AGCAGGCTCCATGCTGTTGATGCGGGGCTCGAACTCACGAACTATGAGCTCATGACCTGAGCTGAAATCAAGAGTCTAAG AGCTAACTGACTGAGCCATCCAGGCACC---CCTAC--ATTTGTTTTT---AAAATGTC-----------AACTACAG-C TGCTTAATCTGCTCCCAGTCTTCCCATTTCTGAG >Manis_pentadactyla TGTGCTGTGGTATGTTGTCTCTAAAA----AAC-TTACA--CCTCTCAGAATCTTC---TTCATAATTTATTTAC----- TTATGTGGTTGTAAATTGAGAAGTAGATGACTTACATAACATTGCACTAGTTTCAGGTGTACAACATAATGATTGGATAT ATATGTATATTGTGAAATGATCACTGCAGTAA-----GTTAAC--ATTCATCAC-----------AAACTT-TTTCTTCT TGTGATG-AGAACATTTAAGATCTACTTTCTTGGAGGCTTCCAA------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------TTCAC-AATTTATTTTT---AAAATGTC-----------AACTAGAG-C TGCTTAGGCTGCTCCCACTCTTCCCATTTCTGGA >Sus_scrofa TGTGCTGTGGTTTATTGTCTATGATT-------TTTAGA--TTTTACAGAATATTC---TTAACAA-----ATAA----- --TTACA-------ATTAGTATATATTTTACTT-----ACATTATATTAGTTTCAAGTGTACACCATAATCACTCAATAC ACATATGTACTGCAAACTCATTGCCGCAGTAAATCTAGTTAGC--ATCCATGGTGACACATAGTCACAAATACTTTTTCT CATGATG-CAAACTTTTAAGACCTACTCTC-AAGCAGTTTTCAA------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------TTCAC-AGTTTATCTTT---AACATGTCTTTAATGGACATGTTAAAGAT TGCTGAACCTGCTCCCAATCTTCCCATTTCTGAG >Bos_taurus TGTGTCATGGTTTATTGTCTCTGATCTAATGGCTTTTGA--TTTTGTGGAATATTC---TTCAT---------GA----- CTACTTA-------ATTTAGACATAATTTATTT--ACAACATTATGTTAGTTTCAGGTGTGCAAACTAATGATTCAATAG ACACATATATTGCAAACTGATCGCCATAGTAAGTCTACTTAAC--ATCCATCAC------------AAAGT-TTTACCCT CGTGATGTAGAACTTTTAAGACCTACTCTC--AGCAATTTTAAA------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------TTCAT-AACTTATTATT---TAAATGTC-----------AACTTGAA-C GGCTGAAACTTCCCCCTGTCTTCCCAATTCTGAG >Equus_caballus TGTGCTGTTGTATATTGTCTCTAATA----GTCTTTAGA--TTTTTCAGAACATTC---TCCACAATTTACTTAT----- --TTTTA-------ATTGAGATAGAATTGACTT----------ATATTAGTTTCATGTGTACAACA-AATGATATTATAT ATG---ACATTATGAAATGATCACCACAATAATTCTAGTTAAC--ATCCATCAT----CACAGTTACAGAT-TTTTCCCT TGTGATG-AGAACTTTAAAGATCTACTCCCTTAGCAACTTTCAA------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------TTCAC-AATTTATGTTT---AAAATGTC-----------AATGAGCG-C TGCTTAATCTGCTCTCGATCTTCCCATTTCTGAG >Ceratotherium_simum TGTGGTGTGGTATATTGTCTCTAATA----GACTTTAGA--TTTTTCAGAATATTC---TTCACAATTTACTTTT----- -----TA-------ACTGAGATATAATTGACTT--ATAACATTGTATTAGTTTCACGTGGACAACAAAATGATGCGATAT ATGTATATATTGTGACATCATCACCACAATAAGTCTGGTTAAC--ACCGATCAC--CACACAGTTACAAAT-TTTTTTCT TGTGATG-AGAACTTTTAAGATCTACTCCTTTAGCAACTTTCAA------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------CTCAC-AATCTATTTTT---AAAATGTC-----------AACTAGAG-C TGCTTAATCTGCTCCTGG-CTTCCCATTTCTGAG >Myotis_myotis TGTATCGTGCTACATTGTCCCTAATA----GATTTTAGA--TTTTTCAGAATATTC---TTCACAATGTCTTTAT----- --TTTTA-------ATTGTTATATAATTGACTT--ATAATGTTATATTAGTTTCAAGTATACAACATAATGATTCGACAA ATGTACTTATGGTGAAATTATTACCACGGTAAGTCTAGTTAAC--ATCCATTTCCACAC---GATGACAGT-TTTTTTCT TGTGATG-AAAATTTTTAAGATCTACTCTCTTAGCAACTTCCAA------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------TTCATCAATC-ATTTTT---CAAATGTC-----------AACTAGAG-C TGCTCAATCTGC-CCCAATCTTCCCATTTCTGAG >Rousettus_aegyptiacus TGTGTTGTGCTATACTGTCTCCAATA----GACTTCAGA--TTTCTCATAATATTC---TTCACAATTTATGGAT---TT ATTTTTA-------ATTGTGATATAATTGACTT--ATAACATTATATTAGTTTCAGGTATACAACG-------------- -------TATCGTGAAATGATTACTACACTAAGTCTAGTTAAC--AGCCATCATGACACATGGATATCAAT-ATTTTTCT TGTGATG-ACAACTTTTGAGATCTACTCTCTTAGCAACTTTCAA------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------TTCACCAATC-ATTTTT---CAAATGTC-----------AACTAGAG-C TGCTTAATCTGCTTCTGGTCTTTCCATTTCCTAG >Condylura_cristata CGAGCTGTGCTGTATCTTCACCAGCA----GACCTTCGG--TTTTCCAAATTATTC---CTTACAATGTATTTTT----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------CAAATGTC-----------AACTAGAG-T GACCTGATTTGCTCCCGGTTTTCCTATTTCTGAG >Erinaceus_europaeus AGTCTTGTGGTATGTGGTCTCCG-----------TTAGA--CTTTCCAGAATGGTC---TCCATGAATCAATTTG----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------AAAATATC-----------A--------- -GCTTGATCTGCTCTTAGCCTTCCTATTTCAGGC >Homo_sapiens ------------------------------GATTTTAGA--TTTTTCATAATATCC---CTCACAGTTTATTGTA----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------AAAATGTT-----------AATTAGAG-C TGCTTAGTCTGCTACCAGTCTCCCCACTTCTGAG Bat156_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGT---GATGTTTT GATA-TACGT---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------ATACATTGTGAAATGATTACCACAATCAAGC----T AATTAACATATCCATCACCTCACATAGTTACCA----TTTTTTTGTGTGTGGTGAG------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------AACACTT-AAGATCTACTCTCTTAGCAAATTTC-AAGTATACAATACAGTATTATTA---ACTATAGTCA CCATGCTGTACATTAGATCTCCA-GAACTTATTC---------------------------------------------- --------------------------------- >Canis_familiaris GTAAAA----------CTATATTC-------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------TTAATAAGCA--TTCAGTAAACTTTTCTGGATATT----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------CTTTATT---GATAAAGTTTT T--------TTGTTTCTATTGAAGTATAATGGACCTA-----ACTATATTAATTTCAGGTGTATGGTGTAACAGTGATTT GATA-TGTGC---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------ATATATTGCTAAATGTCCACCA----AAATC----- ---TAAC--ATCTATCACCATATGTAGTTATACA---TTTTTTTTCTTGCTATGAGAA---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------AACTTTT-AAGATCTACTCTCATAGCAATTTTC-AAATACACAGTACATTATTATTATTAACTATAATCA CCATGCTATATATTACATTCCCATGA-----------GGCA---ATT---TC---ATATAGAAACTTTT-ATATTTGACA TC-ATAGTGTAGGGGAA---GAAACA-TTTTCC >Felis_catus GTAAAACACAC-----CTTCATAT-------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------AAACATAGATTA---TTAATAAGCA--TTCAGTAAACTTTTCTGGATATT----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------TCTTTGTT---GACAAAGTTTT T-----------TTTGTATTGAAGTATAATTGACATGT-AACATTATATTCATTTCAGGTGTACAACAT------GATTC ATTA-TATGT---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------ATATATTGCTAAATGTCCACCACAATAAATCTAATT AATTAAC--ATTCATTACCATATGTAGTTAACAA---ATTTTTTTCTTACAATGAGAAATTTTTTTTAGAATTTTTTTTA AGTTTATTCATTTATTATTTCTGAGAGAGAGAGAGAGAGAGGGAAGGAGAGGGAGAAAGAGAGAGAGAGAGAGAGAGTGT GCACAAGCAGGATGGGGCAGAAAGAGAGGGAGACACAGAATCCAAAGCAGGCTCCAGGCTCTGAGCTATCAGCATAGAGC CCAAACAGGGCTCCAACCCACAGACTGTGAGTTCATAACCTAAGCCGAAGTTGGATGCCTGATTGTGCTACCCAGGCACC CCTCCATGAGAACTTTTTAAGATC---TCTCTCAGCAGTTTTC-AAATATGCAGTACAGTATTATTATTAATTACAGTCA CCATGCTGTATGTTATATTCCCATGA-----------GACAAAGATACTATG---TAGTAGAAACTTTT---GTTTAACA CC-ATAGTGTAGGGGAG---GAAAAATTTTTCT >Manis_javanica ATATAATACCT-----TCATATAT-------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------ATATATATATAGAGAGAGAGAGGTTA---TTAATAAGCA--TTCAATAAACTTTTATGGTTATT----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------TGTT---GACAGATTTTC A-------TGTAGCTTTATTGAAGTATAATTAACAT---AACTTTATATTAGTTTCAGGTGTGCA--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------ATAGATTGCAAAATGATCACTACACTATGTC----T AGTTAAC--ATCTATCACCA---ATAGTTACAG----TGTTTTCTCTTGTGATGAA------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------AATTTTT-AATATATATTCTCTTAGCAACTTGG-AAATGTGCAATATATTATTCTTG---ACTGTAGTCA CCATGCTGTACTTTATATCCTCAGGA-----------GACAAAGATT---TT---AGATAGAAACATTGGATTTTTGACA CC-ATAGTATAAGGGAG---GAAAAACTTTGCC >Sus_scrofa GTAAAATACAC-----CTTCATAT-------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------AAATATGGATTA---------AGTATTTTTCATAAACTT---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------TATC---AACAAAAGTTT T--------------TTATTGAGGTGTAATTGACATA-----------TTAGTGTCAAATATACAAAAT---AATGATTT AGTA-TTTGT---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------ATATATTGCAAAATGATCCTTACCATATGTC----- ---TAAT--ATCCGTCACCATACATAGTAACGAAAGGTTTTTTTTCTTGTGATGAG------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------AACTTTTAAAGATCTACTCTCTTGGCAACTTTC-AAATAGGCAATACAGTATTGTTA---GCTACAGTCA CCAGGTTGTACATTACATCCCTATGA-----------GACAGAAATT---TT---AGATAGAAACATTTGGTGTTTGACA ----TAGTTTAAGGGA----GGGACAATTTTCC >Bos_taurus GTAAAATGCAC-----CTTCATAAAACTGTGGTGTGGGAGAAAACTCTTGAGAGTCCCTTGGACTGCAAGATCAGCCCTG GATGTTCTTTGGAAGGAATGATGCTAAAGCTGAAACTCCAGTACTTTGGCCACCTCATGCGAAGAGTTGACTTATTGGAA AAGACTGATGCTGGGAGGGATTGGGGGCAGGAGGAGAAGGGGACGACAGAGGATGAGATGGCTGGATGGCATCACCGACT CGATGGACATGAGTCTGAGTGAACTCCGGGAGTTTGTGATGGACAGGGAGGCCTGGCGTGGTGTGATTCATGGGGTCGCA AAGAGTTGGACAGGACTGAGTGACTGAACTGAACTGAA--CTGAAGGATA--TTCAGTAAACTT---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------TATT---GACAAA-GTAA C-------TTTTTTTTTATTGAGGTATAGTTTATATAT-AACATTACATTAGTTTGAAGTATATGACAT---AATGATT- AGTA-TTTGTATATGTTGGACAAAGAAGGCAATGGCACCCCACTCCACTACTCTTACCTGGAAAATTCCATGGATGGAGG AGCCTGATAGGCTGCAGTCCATGGGGTCGCTGAGGGTCTGACGCTATTGAGCGACTTCACTTTGGCTTTTCACTTTCATG CACTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTGCCG TCTATGGGGTCGCACAGAGTCGGCCACAACTGAAGCGACTTAGCATATGTTGGAAAATGATCCTTATAATATGTC----T AGCAACC--ATCCATCACCATACATAGAAGCAAT--TTGTGTGTGTGTGTGATGAG------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------AGCTTTC---AATCTACTGTCTTAGCAACTTGC-AGATATGCAGTACAGTATTATTA---GCTGTAGTCA CCATGCTGTACATTACATCCCCATGA-----------CACAGAAATT---TT---AGATAGAAACATTTGATGTTTGACA TTATTAGTGTAAGGAAG---GAAAAATTTTCCC >Equus_caballus GTAAAACACAC-----CTTCATGT-------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------AAGCGTAGATTAAT-CTGTTAAGCA--TTGAGTAAACTTT-CTGGATATTGACAG AGTTTTTC------------------------------------------------------------------------ -------------------------------------------------------------------------------- ----------------------------------------------------------TGGATGTT---GACAAA-GTTT T------AAAAATTTTTATTGAGGTATAATTGACATAT-AACATTATGTTAGTTTCAGGT-TATAACAT---AATGATTT GATA-TTTGT---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------ATATATTGCGAAATGATC---ACAGTAAGTC----T ACTTAAC--ATTTGTCACCATGCATAGTGACAAA---TTTTTTTGCTTGTGATAAG------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------AACTTTT-AAGATCTACTCTCTTAGCAACGTTC-AAATGTGCAGTACAGTATTATTA---ACTATAGTCA CCATGCTGTAGATTACATTCTCGTGA-----------GACAAAGA---------------------TTTGATGTTTGATA TC-ATAGTATATGGGAG---TAAGAATTTTTCC >Ceratotherium_simum GTAAAACACAC-----CTTAATAT-------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------AAACAAGGATTAAT-CTGTTAAGCA--TTCAGTAAACTTTTCTGGATATTTATTT ATTTTTTTTTGTTATTTTATTTATTTATTTTTTCCCCAAAGCCCCAGTAGATAGTTGTATGTCATAGCTGCACATCCTTC TAGTTGCTGTATGTGGGACGCGGCCTCAGCATGGCCGGAGAAGCGGTGCGTTGCTGCGCCCCTGGGATCCGAACCTGGGC CGCCAGTAGCGGAGCGCGCGCACTTAACCACTAAGCCACGGGGCTGGCCCTGGATACTTATTTGTT---GACAAA-GTAT T---TTTTGTTGTTTTTATTGAGGTATTATTGACATAT-AACATTATATTAGTTTCAGGTGTATAAGAT---AATGATTC GATA-TTTGT---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------ATATATTGCAAAATGATCACCACTGTAAGTC----T ACTTAAC--ATGCATCACCATACGTAGTTATAAA----TTTTTTTCTTGTGATGAG------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------AACTTTT-AAGATCTGCTCTCTTAGCAACGGTC-AAATATGCAATATGGTATTATTA---ACTATAGTCA CTGTGTTGTACATTACATTCCCGCGA-----------GACAAAGATT---TT---AAATAGAAACATTTGATGTTTGATA ----TAGTGTAGGGGAG---AAAAAATTTTTCC >Myotis_myotis GTAA---CCCT-----CTTCATAT-------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------AAACATGTATTG---TTAATAAGCA--TTCAGTAAACTTTACTGAATATT----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------TGTT---GACAAGA-TTT T---TATTACTGTTTTTATTCA-GTATAATTGACAT--------TATATTAATTTCAGGTGTACAACGTG--AATGATTT GATATTTTGT---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------ATATATTGCCAAATGATCACCACAATAAAGT----- ---TAAC--ATCCATCATCACACATAGTTACAAA---TTCTTTTTCTTGCAGTGAG------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------AACTTTT-AAGATCTATTCTCTTAGCAACTTTT-AAATATACAGTACAGTATTATTA---ATTATTGTCA T--------------GATCCCCATGA-----------GACAAAGATT--------TTATAGAAACATTTGATGTTTGATA TC-ATAGTAGAAGGGAA---GAAAAAATTTTCC >Rousettus_aegyptiacus ATAAAACACAT-----CTTTATAT-------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------AAAAATAGATTATTATTATTAAGTC--TTCTGTGTGTGTATATATATATA----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------TA--TGTT---GACAAAGGTTT C---TGTTATTGTTTTTATTAAGGGATAATTGA-----------TATATTAGTTTCAACTGTACAACAT---AATGATTT GATA-TTTGA---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------ATATGTTGCAAAATGATCACCACAATAAGTC----T AGTTAAC--AT------CTACACATATTTCAAAA---------TTCTCGTGATGAG------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------AACTTTT-CAGATTTGTTATCTTAGTAACTTTCAAAATGTGCAGTACAGTTTTTTTA---ACTGTAGTCA CCATCCTGTACATTACATCCCC-TGA-----------GACAAAGA---------------------TTTAATGTTTGACG TC-GTAGTGTAAGGGAA---GGAAAAATTGTAC >Condylura_cristata GTAAAATACAT-----CCTCATAT-------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------AAAATAAGCA--TTCAGTAAACTTTTT--GATAAA----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------TAG-T-TT---GACA-GAGCTC T------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------TTATGGAAACATTTGACATTTGATG TCAGTAGTGCAGGGGAGAAAAAAAAAATCTTTC >Erinaceus_europaeus GTAAGATACATTTTTCATATAAAC-------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------ATAGGTTG---CTGAAAAGTCATTTCTGTAAACTTTTCTGGATATT----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------TATTT-TT---GATAAGAATTT T------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------GTTAAAAAGTGTTTATTAT-CGATG TCATGAGTGTAGAGGAC-----AAAAGCTTTCC >Homo_sapiens ATAAAATATGC-----CTTAATAT-------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------AAACAAAGATTG---TTACTAAGTA------GTAAACTTTTCTGGATATT----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------TATTTGTT---GACAGAGATTT T------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------AGATGGAAACATTTAATGTTTGACA TCTG-AGTNNNNNNNNNNNNNNNNNNNNNNNNN Bat158_LINE >L1MA9_3END ----------------------------------------------------------------------------TAAA AAAGTCAAACTCATAGAAGCAGAGAGTAGAATGGTGGTTGCCAGGGGCT-GGGGGGTGGGGG--AAATGG-GGAGATGTT GGTCAAAGGGT-ACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGT-ACAGCATGGTGACTA-TAGT TAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCAC-------------------- ---------CACACAC---------------AAAAAAATGGTAACTATGT----------GAGGTG--ATGGATATGT-- -----TAATTAGCTTGATTGT-GGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATAT ATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA----------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------ >Canis_familiaris TTAAAACAGTACATCTCAAGGTCATT-TGCTGAAAATAGGAACA-GAAAAGT---AAAA--------ATTATT------- -------AACTCATAGAAA-------TAGAAAAGTTGTTGCCATTGACT--GAGAATGGGGTG-AAATAG-GGAGAGGTT TGTAAAATAAT-ACAAATTTTTAGCTAT--AAAATGAATAAGATCCGAGGACCTAATGT-ATAATGTGGTGAGTA-TATT TGATAACACTATACTGTATAGTTGAAATTTGC-AAGATTGTACAACTTAAATGCTCTCTCTCTCATACACACACACACAC ACACACACACACACACACACACACAAACCACCAAAAACATACACACACATACACAGAGAGGAGGTG--ATGGATGTGTGG ATGTATAATCAACCAAATGGGAGAAAAT-----------------GTAAATCAAATCACTATGATGAACA--CTCAAGAT CTTATAATTTTATATTTCACTTGTACCTCAGCAAAACTGACTTTTTTT-----AAAAGATTTTATTTATTTATTCATGAC AGAGAGAGAGAGGCAGAGACACAGGCAGAGGGAGAGAGGGAGAGAAGTAGGCTCCTTGTAGGAGCCTGACGTGGGACTCG ATCCGTGGTCTCCAGGATCACACCCCGGGCTGCAGGCGGCGCTAAACTGCTAGGCCACCAGTGCGGCCCAAAATTGACTT TTTTAAAATTACATTTTTA---GTTCATTTCCTCATTTATTCAGT----ATATGTTAAATATTGACATGGGTCAGGTACA ATTTGG >Felis_catus TTACTATAGTGCATATCAAGATCATTCTGCTGAAAATAGAAACA-GAAGGGT---AAAA--------ATTACT------- -------AACTCATACAAACAGAGAGTAGAAAGATGTTTGCTAGGAGCT--GAGAGTGGGTG--ATGTAG---------- --TAAAAGGGT-ACAAATTTTTAGCTAT--AAGATGAATAAGATCTGAGGACCTAATGTAAAAACATGGTGAGTA-CAGT TGATTACGCTATGTCGTATAGTTGAAATTTGC-AAGAGCATAGTATTTTAATGTTCT----------------------- ---------TACCGAAAAAGAATATGCACATACATACACCGCACACACAT----------GAGATGATATGGCTGTGTGA ATGTGTAATTAACTAGATGGGAGAAAGTCCTTTCACAGTGTGTATGTATGTCGAATCACTATGATGAACA--ATGAATAT CTTATAATTTTATATGTCAAGTATACCTCAGTGAAGTTGGGATTTTTTTT---AA---TCATACT--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TTTTTA---ATGCATTTTCTCACTTATTCACTGAG-GTTTTTTAAATATTTACATGGGTCAGGCACA GTTTGG >Manis_pentadactyla TTATTGCAGTGTATGTCAAGGTCATTCTGCTGAAAAGAGAAACA-GAAAAAC---AGAAAATTAAACACCATT------- -------AATTCATAAAAAGAGAGAGTAGGAAAGTGCTTGCCAGAGTAT--GAGAGTTGGAG--AAATAG-GGAGAAGTT GGGAAAAGGG---CAAACACTCATCTGT--AAGATGAATAAGGTCTGAGGATCTAATGT-ATAACATGGTGACTA-TAAT TGATAACACTGTATTGTATAGTTAAAATTTTCC--GAGAGTACAATTTAAATTTCCT----------------------- ---------TAC--------------------AAAAAA---AAAATGTGT----------GAGATG--AT--ATGTGG-A TGTCTTAATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNN--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------NNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNN >Sus_scrofa TTATTGAAGTGCATATCAAGGTCAATCTGCTAAAAATAGAAACA-GAAGAGT---AAAA--------ATTACT------- -------AACTTATAGAAACAGAAAGTAGAAAAGGGCTTTCCAGGGGCT--GAAGGTAAGGG--AAATAACAGAGAGGTG GGTAAAAGGGT-ACAGACTTTCAACTGT--AAGGTGAATATAGTCTGAGGATCTAATGT-AAAATGAAGTGGCTATTAGT TGATAAAATTGTATTATTTAGTTGAAATTTGCTAAGAAAGTAGATCTTAAGTATTCT----------------------- ---------CACACACGC--------------AAAATC---TAAGTATGT----------GAAATG--ATGGAGATGT-- -----CAATTAACCAGATGGGAGGAAATCCTTTCACAAAGTAAACGTATATTAAATCACTAGGATGAACACTCTAAATAT CTTACAATTT--TGCATTAGTTGCATGCCAATGAAGCTGAAATTTTTG-----AAAAATTACAT---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------GCTTTT---ATTCTTTTCCACATTTTTTCAAT----ATTTATTAA-TATTTTCATGAGTCAGGCATA GTACAG >Bos_taurus GCATTGCACTGCATATCAAGGTCATTATGCTTAAAATAGAAACA-GAAGAGT---AAAA--------ATTACT------- -------CAATTTTAAAAGCAGAAAGGGCAAAAGCGGTTGCCAGGAGCT--GAAGGTAGGAG--AAATAC-AGAGTGGCT GGTTAAAGTCTCGGAAATTTTCAGCTGT--AAGATGAATTAACTCTGAGGAGCTCATGC--AAAGATGGTGGGTATCAAT TGATCCCATTATATTGTATAG-TGAAATGTAC-AAGAGAA-AAGTCTTAAATATTAT----------------------- ---------CACACAC----------------AAAAGA---CAATTATAT----------GAAGTG--ACAGATATGT-- -----TAATTAACTAGACAGTAGGCAATTGTTTCACAATGTGCGGATAGATC-----ACTAGGACAAACA--CTAAATAT CTTACAATTT--TGCATCAGTTACATATCAGTAAAACTGAAATTTTA------AAAAATCACCA---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TCTTTC---ATTCTTTTCCACATTTTTTTAGTGACTATTTAT----TGTTTTAATGGGTCAGGCGTG GCTCAG >Equus_caballus TTATTGTAGGGTGTATCGAGGTCATTCTGCTGAAAATAGACACA-AAAAAGA---AAAA--------ATTATT------- -------GACTCATAGAAAC--AAAGTAGAAAATTGGTTGCCAAGGGTT--GAAGGTGGGGG--AAATAA-GGAGAGGTT GGTAAAAGGAT-CCAAACTTTCCGCTGT--AAGATGAATAAGATCTGAGAATCTAATGT-CAAACATGGTGACTA-TAGT TCATAACACTGTTTCGTATAAGTGAAATTTTCTAGGAGAGTAAAACTTAAATGTTCT----------------------- ---------CACCCCC----TACTTCCCCCCAAAATGA---TATTTATGT----------GAGATG--ATGGATGTGT-- -----TAATGAAATAGATGGG-GAAAATCCTTTCACAATGTATATGTATATCAAATCACCACAATCAGCACACTAAATAT CCTACAATTT--TCTGTCAACTATACCTCAATAAAGCTGAAATTTTTAA----AAAAATCATGC---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TCTTTC---ATTTACTTCCTCATTTATTCAGTGAATATTTAATAAATACTTACATGAGTCAGGTGTA GTTCAG >Ceratotherium_simum TTATTGCAGAGCATATCCAAGTCATTCTGCTGAAAATAGAAACACGAAAAGT---AAAA--------ATTATT------- -------AACTCA-AAAAACAGAGAGTAGAAAAGGGGTTGCCAGGAGCTGGGGGGGTGAGGG--CAATAG-GGAGAGGTT GGTAAAAGGGT-ACAAACTTTCAGCTAT--AAGATGGATAAGGTCTGAGGATCTGATGT-AAATCATGGTGACTA-TAGT TGATAACACTGTATTGTATAAGTGAAATTTGCT--GAGAGTAGAACTTAAATGTTCT----------------------- ---------CATTCCC-----------CCCAAAAAAGA---TAAATATGT----------GTGATG--ATTGATGTGC-- -----CAGTTAACTAGATGGGGGGAATCCTTTTCACAATGTATGCATATATCAAATCACTATGATGAACACTCCAAATAT CTTACAATTTTATATATCAATTATACATCAATAAAGCTGAAATTTAAA-----AAAAACCATAT---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TCTTTC---ATTCATTTCTTCATTTATTCAGTCAGTATTTATTAAGTATTTTCATGAGTCAGGCATA GGTCAG >Myotis_myotis TTATTGCAGTTCATAGTAAGGTAATTCTGCTGAAAATAGAAACC-AAAGAAT---AAAA--------ATTA--------- --------ACATGTAGAAACTGAGAGTAGAAA----GTGGCCAGGGGCT--GCAGGTGGGG---AAATAG-GAAGAGGTT AGTAAATGGGT-GCAAAGTTTCAGGTAT-----------AAGGTCTGATGATCTAAGGT-GAAGCATGATGACTA-TAAT TGATAATG--GTATTGGATAAGTGAAATTTTCTAAGGGGGTAGACCTTAATTGTTCT----------------------- ---------CACACAC-------------ACAAAAAGC---TAATTACAT----------GAGGTT--ATGGAAGTGT-- -----TAATT------ATGGGAGGAAATCTTTTCAAAATATGGACATGTATCAAAACCCTAC----------------AT CTTACCATTTTACATGTCAATTTTATCTTAAT-AAGCTGACATTTTA------AAAAGTTAC------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TCTTCC---ATTAATTTTCTCATTGATTCATAGAGTATTATTTTANNNNNNNNNNNNNNNNNNNNNN NNNNNN >Rousettus_aegyptiacus GT-TTACCGTGTATATCAAGGTCATTCTCTTGAAAATAGAAACT-GAAGAAT---AAAA--------ATTATT------- -------GATACAAAAAAACAGAGAACAGAAAAATGGTTGCCAGGGGCTGGGGAATTGGGAAGTAGGGAG-GGAGAGGTT GGTAAAAGGGT-ACAAACTTTTAGTTAT--AA-ATAAATAAGGTCTGA-AATATGAC-------TACAGTTGATA-AAAT TAATAACACTGTATTGAATAATTAAAATTTCCTAAGAGAGTAGAACTT--ATATTCT----------------------- ---------GACCAATAAAT-----------AAATAAA---TAAATACAT----------GAGGTG--ATGGATGTGT-- -----TAATTAACTCAATGGGAGGAAATCTTTCCACAATGTATACATGTATCAAAACACTATGATGAACA--TTAAATAG CTTACCATTTTATGTGTCGATTTTGCCTCGAT-AAGCTGAAATTAA-------AAAAACAAAGTCAC------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------GCTTCC---ATTCATTTTCTGATTTATTCAGTGAGTATTTGT----TGTCTACATGTGTCAGGCATA GTTCAG >Condylura_cristata TTATTATAGTACATATCAAAGTCACTCTGT--------GAAAAC-AAATATT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------AGAAA---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TTATTC---ATT------------TATTCAAC----AAATATTAAGTACTTATATGCATCAGGCATC TTTTTT >Uropsilus_gracilis TTATTACAGTGCATATCAAGGTCATTCTGCTGAAAATAGAAATA-TAATATT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------AGA------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TTATTC---ATTCATTTTCTCATTTATTCACTAAATATTTATTAGGTG----GATAAGAAAGGCATA GTTGGT >Homo_sapiens TAATTGCAGTGCATATCAAGCTCATTCTGCTGAAAATAGAAACA-AAACATC---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------AACAATGATTATAC------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TCTTTT---GTTCATTTCCTCATTTATTAAATAAGTGTTTATTGAGTATTTACATG----------- GTCCAG Bat159_LINE >L1MA9_3END -------------------------------------------------------------------------------- -----------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATG TTT-------------------------------------------------TGATATACGTATACATTGTGAAATG--- ---ATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTACCATTTTTTTGTG--------TGTGGTGAG AACACTTAAGATCTACTCT------------------------------------------------------------- --------------------------------------------------- >Canis_familiaris AGTCAAAAAT-GAAACTGGTTAATGTCCT-ATAGGGCAATAAAACAGTAAGTTT---TCAGTTATTTC------TTTT-- -TCTGCTAGTTATATGTCAATTGTATAAATGTATGCTT-ATGCAT-AATGTTGCATAAGTTTAAAATGTAAAACATAGTG ACTTGAGGTATATATATATATATATATATATATATATATATATATAGCGAAATGATATATGTTTATATTGTGAAATG--- ---ATCACCATAATAAGTTTGGTTAAT--ATCCATCACCTCACATA------ATTTTTTTTCT--------TATGATGAA AATTTTTAA-------------TGAGTTATTATTTCT---ATCAGGCCATAAAACAAAACAAAACAAAACAAAACCCTCT ATTTCTACAGGATGAAAA-TGTAC------------------TTCAAGTCT >Felis_catus AGTTAGAAAT-AAAACTGGTTAATGTCCT-ATAGGGCAATAAAACAGTAAACTT---TCAGTTATTGT------CTCT-- -CTCTCTCTTTTTTTGCTAGTTTTATTGATATACAGTTGACATAT-AGCATTGTATAAGTTTAAAGTATATAACATAATC ATT-------------------------------------------------TGATGGATGGATATATTATGAAATG--- ---ATCACCACAGT--GTTTGGTTAAT--AGCCATCACCTCACAGAGTTATGATTTTTTTTCT--------TATGATGAC AATTTTTAA-------------AGAGTTAATA-TTCT---ACCAGGCCAAAAA-----------------ACAAATT-GG ATTTCTACAAGATCAAAA-TGTACAAGTTACTGTGT---AACTTTTAGTCT >Phataginus_tricuspis AGTTGGAAGC-AAAACTAGTTAATGTCCT-ATAGGGCAATGAAACAGTCTGCTT---GGAGTTACTTTTTCAAATTCT-- -TTTTCTAGTT---------TTATTGAGATGTA-ATTG-ACATAT-AACATTGCATAAGTTGAAAATATACAATATAAAG ATT-------------------------------------------------CGACATATGTATATATTGCAAAATG--- ---ATCTCCACAATAA-----GTTAAC--AT-CATCATCTCACATAGTTACAATTCTTCTTCTT-------TGTGATGAG AACTTTTAA-------------TGACTTACTGCTTCT---ACCAGAC---AAA-----------------AACACTT-AT ATTTCTGGAGGATTAAAA-TGTACAAGTTCGCGTGC---AACTTTTCATCT >Sus_scrofa AGTTCGAAAC-AGAACTGATTAATGTCCT-ATAAGGCAATAAAATAGTAGGCTT---TGAGTTATTAT------TTTT-- --------------TTCCAGTTTAGTTGAAATATAATTGACATGT-AACATTATATAAGTTCAATGTGTACAACATAATG ATT-------------------------------------------------TTATATATG-ATATAATGTGATATATGA TATAATGTGATAGTAAATTTAGTTAAC--ATCCATCACCTCATATACTTACAATT-TTTTCCT--------TTTGATGAC AACTTTTAA-------------TGAGTTATTGTTTCT---ACTAG-----AAA-----------------AAAATTCAGT TTTTCTAGAGGGTGAAAA-TCTACAAG---------------TTTTAGCCT >Tursiops_truncatus AGTTAGAAGC-AAAACTGGTTAATGTCCT-ATAGGGCAATAAAACAGTAAGCTT---TGAGTTATTGT------TTCT-- ---------TTTTCTCCCAGTTTTATTGAAATATAATTGATATAT-AACATTGCATAAGTTCCAGGTGTACAACATAATG ATT-------------------------------------------------TGATATATG-ATATATTTTGA-ATG--- ---ATTAGCACAGTACGTTTAGTTAAC--ATCCATCACCTCACATACTTTCAATTTTTTTCCCT-------TGTGATGAG AACTTTTAA-------------TGAGTTATTTTTTCT---ACCAGACCAAAAA-----------------AAAATTTTAT ATTTCTACAGGGTGAAAA-TCACCAAGTTAGCATGT---AACTTTTACCCT >Equus_caballus AGTTAGAGGC--AAACTTGTTAATGTCCT-ATAGGGCAATAAGACAGTAAGCTT---TGAGTTATTAT------TTCT-- --------CTTTTTTTCTAGTTTTATTGAGATATAGTTGACATAT----GTCATATAAGTTTAAGGTGTACTACGTAATG ACT-------------------------------------------------TGATATATGTAGATACTGTGAAATG--- ---ATTACCACGATAAGTTTAATTAAC--TTCCATCACTTTGCATAGTTACAATTTTTTCCCCT-------TGTGATAAG AACTTTTAA-------------TGAGTTACTGTTTCT---ACCAGGC--AAAA-----------------AACATTT-GT ATTTCTACAGGATGAAAA-TCTACAAGTGAACACGT---AACTTTTAGTCT >Ceratotherium_simum AGTTAGAAAC-AAAACTGGTTAATGTCCT-ATAGGGCAATAAGACAGTAAGCTT---TAAGTTATTAT------TTCT-- --------CTTTTTTTCTAGTTTTATTGGGATATAATTGACATAT-AACATCATATAAGTTTAAGGTGTATTATGTAATG ACT-------------------------------------------------TGATATATGTAGATACTGTGAAATG--- ---ATTACCACAATAAGTTTAGTTAAC--ATCCATCACCTCACGTAGTTACAATTTTTTTTCCT-------TATAATGAG AACTTTTAA-------------TGAGTTATTGTTTCT---ACCGGAC--AAAA-----------------AACATTT-GT ATTTCTACAGGATGAAAA-TCTACAAGTGCGCATGT---AACTCTTAGTCT >Myotis_myotis AGCGGGAAAC-AAAACTGGTTAATGTCCTAATAGGGCTATAAGACAGTAAGCTT---TGAGTTATTGC------TTCC-- ---------TTTCTTTCTAGTTTTA------TATAATTGACATAT-AACATCACATAAGTTTAAGGTGCACAACATAATG ATT-------------------------------------------------TAATATATGTATGTATTAGGAAGTG--- ---ATCACTGCAATAGATTTAGTTAGC--ATCCAGCATCTCACATAGTTACAATTTTTTTCCT--------TTTGACAAG AACTTTTAA-------------TGAATTGTTGTTTCA---ACTGGAC---AAA-----------------AGCATTT-GT ATTTCTATAGGATTAAAACTCTATAAGTGAGCATGT---AACTTTTAGTCT >Rousettus_aegyptiacus AGTTAGAAAC-AAAACCGGTTAATGTCCT-ATAGGGCAATAAGACAGTAAGTTT---TGAGTTACTGT------TTCT-- ------TTTTTTTTTTCTGGTTTCATTGAGTTATAATTGACATAT-AACATCG-ATAAGTTTAAGCTGTAAAAGATAATG ATT------------------------------------------------------TATGTATATATTGGGAAATG--- ---ATTACCACAATAAGTTTAGCTAAT--ATTCATCACCCTACATGGTTACATTTTTTTTAAATAAGAGTCTTTAATAAG AGTCTTTAA-------------TTATTTATTGTTTCT---ACTAAAC--AAAA-----------------AACATTT-GT ACTTCTACAGGATGAAAA-TCTACAAGTGTTCATGT---AACTTTTAGTCT >Condylura_cristata AGTTATAAATAAAAACTAGTAAATGTCCA-TTAGGACAATAAAACAG--AG--T-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------AAAATTGATGTTTCT---ATTAGACAAAAAA-----------------AAAAT---GT ATTTCTTCGAGATGAACA-TCTACAAGTTAGCTTCT---GGTATTTAGTTT >Uropsilus_gracilis AACTACGAAC-AAAACTGGTTCATGTCCT-ATAGGGAAGTAGAATAGTAAGCTT-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------TGAGTTGATGCTTCT---ATTGGACAAAAGA-----------------AAAATC---- ATTTTTACAGGATGAAAA-TATACAAGTTATCTTGTATAAGTTTTTGGCCT >Homo_sapiens AAC-ATAAAT-AAGACTGATTAATGTCCT-GTAGAGCCATAAAACAGTTAGCAC-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------TGAGTTATTGTTTCT---ACTAGAC---AAA-----------------AACATTT-CT ATATCTACAGAATGAAAA-TCTATAAGTTAACATGT---AACTTTTAGTCT Bat165_LINE >L1MA9_3END -------------------------------------------------------------------------------- ------ATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCAC CACACACAAAAAAA----TGGTAACTATGTGAGGTGA--TGGATATGTTAA-TTA---GCTTGA-TTGTGGTAATCATTT CACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAAT--TTTTATTTGTCAATTATACCTCAA TAAAGCTGGAAAAA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------ >Canis_familiaris CCTAGTACATCTAC----AAAAGAATATAGTAAATTACTT----AGTAAT-AAT-----------------CTGGGACTA TAG----------------CCAATAATAATGTATCATATACTTGAAAGTTGCTGAGA--CTAAATCTTAAAAGTTTTTAT TACAATAGAAAAAA---CTTGTAACTATGTGTGATAA--TAG--ATGTTAA-CTATTAACTAGACTTGTAGCGATCATTT CATGGT----ACAAATAGTCAATCATTATGTTGTACATCTCAAC----TAATGT-----TATTTATCAATTATATCTCAA ------AAAGGATTCTTTTTA---AAGATTTTATTTATTTATTCATAGATACATAGAGAGAGAGGCAGAGACACAGGTAG AGGGAGAAGCAGGCTCCATGCAGGAAGCCCGATGTGGGACTCGATCCCGGGTCTCCATGATCACACCCCAGGCTGCAGGC GGCGCCAAACCACTGCACCACCAGGGCTGCCCTCAAAAAGGAAATTTTTTAGGGACTCCGGAGTGGCTCAGTGGTTGAGC GTCTGCCTTTGGCTCAGAGCGTGATCCTGGAGTCCCGGAATCAAGTTCTGCATCAGGCTCCCCGCACGGAGCCTGCTTCT CCATCTGCCTGTGTCTCTCATAAATAAATAAATAAAATCTTTAAAAATATTTTTTGAAGATTAAA----CTG---ATAAT TATTATAT--TGA-GGTCATTCTCTGAACTTATTCTTATATTTT--AGTATAAACCCTAAAGTGTAAGT----------- ---------------CTCAAGCAT >Felis_catus CCTAGTACATCTACATTCAAAAGAATA-----AATTACTTAGTAAGTGAT-AATT---AAGATTAACCTATCTGTGATTA TAG----------------CTAATAATAATGTATCATACATCTGAAAGCCGCCGAGA--GCACATCTTAAAGGTTTTCAT CACAAAAGGGAAAACAATTTGTAACTATGTGTGATAA--TGA--AAGTTAA-CTA--GACTTG--TTGTAGTGATCATTT AGCAATATATATAAATATGGA------ATGTTGTATACTTGAAC----TAATGT-----TATATGTCAATTATATCTCAA ---------AAACATTTTTTA---AAGAT--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------TAAA----CTG---ATAGC TATGATATTCTGA-GGCCATTCTCTGAACTTAATCTTTTTACTT-GAGTATAAATCCTAAAGTGTAAGT----------- ---------------CTGACGCAT >Manis_pentadactyla CCTAGTATACCTACAATAAAAAGAATAC--TAAATTTCTCAGTAAGTGATAAATT---AAGGTTAAACTATCTGTGACTA CAG----------------TTAATAATAATGTGT-----ATTTGAAAGCTGTTGAGAAAGTAGATTTCAAAAGTTCACAT CACAAGGGAAAAAA--------AAC--TATGTGATGA--CAG--TAGTTAACCTA--AACTTG--------TAATCATTT TGCCATGTATACAAATACTGAATCATTATGTTGTATACAGGAGAAC--TAGTAT---GTTATGTGTCAGTTACATCTCAG ----TAAAAAA--CTTTTTAA---AAGGT--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------TAAACTACCTG---GTAAC TACAATATCCTAA-ATTCAATCACAGAACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------- ---------------NNNNNNNNN >Sus_scrofa CCTAGTACATCTACAATCAAAAGAATGCAGTAAATTATTT----TGTGAT-AATT---AAGACTAAACTATCTGTGACTG TAG----------------CTGAGAATACTGTATTGTATATTTGAAAGTTACTGAGAGAGTAGATCTTAAAAGTTCTCAC CACAAGGAAAAAAA----CAGTAAC--TGTGAGACGG--TGG--ATGTTAA-CTA--AACTTG--TTATGAGGACCATTT CACAACAGACACATAGAACAAATC---ATGCTGGACACCCGAAAC---TAATGT------------CAATTACTTCTCAA TTTTAAAACAA------TTTA---AAGAT--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------TAAACTATCCA---ATAAC T--------CTGA-GCTTATTCTCCAAA---------------------------------------------------- --------------------GCAA >Tursiops_truncatus CCTGGTACATCTACAATCAAAAGAATATAGTAAATTACTC----TGTGAT-AATT---AAGATTAAACTATCTGTGACTA CAG-------------------TTAATACTGTATTGTATATTTGAAAGTTGCTAAGAGAGTAGATCTTAAAAGTTCTCAT CACAAGAAAAAAA-----TTATAGC--TGTATGATGA--TGG--ATGTTAA-CTA--GAC-----TTGTTATGATCATTT TGCAATATACACAAATACCGAATCGCTATGTTGCACACCTGAAAC-----ATGT-----TATATGTCAATTATAGCTCAA CTTTTAAAAAA-----TTTTT---AAAAT--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------TAAACTATCTT---ATAAC TACAATATTCTAA-GGTCATTCTCTCAA----------------------TAAATCCTAAAGTATAAGT----------- ---------------CTGANNNNN >Equus_caballus CCTACTACATCTACAATCAAAAGAACATAGCCAATTACTTAGTAAGTGAT-AATT---AAGATTAAACTACCTGTGAC-- -----------------------------TGTATTGCATATTTGAAGGTTGCTAAGACAGTAGATGTTAAAAGTTCTCAT CACAAGGGGAAAAA-AGTTTGTAAC--TGTGTGATAA--TGC--ATGTTAA-CTA--GACTTC--TTGTGGTGATCATTT CACAATATATACAAATATCGAATC---ATATTGTTTACCTGAAGC---TAATAT----------GTCAATTATATCCCAA ----TAAAAAA---TTCTTTT---AAGAT--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------TAAACTATCTG---CTAAC TACAATTTACTGA-AGTCATTCTCCAAATTTAACCTTTTAAGTT-TAGTATTAATCCTAAAGTGTAAGT----------- ---------------TTGAAGCAT >Ceratotherium_simum CCTAGTATATCTACAATCAAAAGAACATAGTCAATTACTTAGCAAGTGAT-AATT---AAGATTAAACTATCTGTAACTA TAG----------------GTAATAACACTGTATTGCATATTTGCAAGTTGTTAACACCATAGATCTTAAAAGTTCTCAT CACAAGGGAAAAAA-AATTTGTAAC--TGTGTGATGA--TGG--ATGTTAA-CTA--GACTTG--TTGTGGTGATCATTT CACAATATATACAAATATCAAATC---ATGCTGTATACCTGAAAC---TAATATAAGGTTATAAGTCAATTATATCCCAA ----TAAAAAAAATTTTTATT---AAGAT--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------AAAAACTATCTG---ATAAC TACAATTTATTGA-AGTTGTTCTCCAAACTTAATCTATTACTTG--AGTGTGAATACTAACGTGTAAGT----------- ---------------CTGAAGCAT >Myotis_myotis TCTACTACATCTGC-ATCAAAGGAGTA-----AATTACTT----CATGAA-AATA---AAGATTAAAGTATCTGTGACTA TAC----------------TTAATAATACTGTATTGTATATTTGAAGGTTGCTAAGA--GTACATCTTAA--GTTCTAAT AACAAGGGGAAAAA----------CTAAGAAAAACAA-------ATGTCAA-TTA--GAC-----TAACGGTGATCATTT CACAATATATACAAATATCGAATTATCATG-TATACACCTGAAAC---TAATATAGTGTCATATGTCAGTTACATTTCAA ---TTAAAAAAAAATTT---------AAT--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------TAAACTTTCTG---TTAAC ------ATTTTGA-GGTCATTCTCCAAACTTAATATTTTATTTT--AGTATAA-TCCTAAAGTATAAAT----------- ---------------ATGAAGCAT >Rousettus_aegyptiacus CCTAGTATATTCAT-ATCAGAAGAATACAGTAAATTACTA----AGTGAT-AATT---AAGATTAAACCATCTGTGGCTA CAG-------------------TCAATACTATACCGTTTATCTGAAAGTTACTAAGAGAATAAATCTTAAATGGTTTTGC AATAAGTGGGAAAA-------------AATGAACTGAATTGG--ATGGTAA-CTA--GAC-----TTACGGTGATCATTT CAGAATATGTACAAACACTGAATC---ATATTGTACACCTGAAACTAATACAGGGTTGTTATATGTTAATTATGGCTCAT ----TAAAAAAAAAATTTTTT---AAGAT--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------TAAA--GTCT-----TAAT ------AT-CTAA-GGTCATTCTCTAAACTTGATATTTTATTTA-GTATATAAATCCTAAAGTGTAAAG----------- ---------------ATGAAACAT >Condylura_cristata CTTAGTACATTTACAATCAAAAAAATAT----------------AGTGAT-TATT------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------AACAT--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------TAAACTATCTG---ATGAC TATAAAACTGTAAATATTATTCTTTGAATTTAACCTT-TACTTT--AGTATAAATCCTAAAATATAAGTGA--------- ---------------GTGAAGCAC >Scalopus_aquaticus CCTAGTACCTTTACAATCAAAAGACT-T----------------ATTGAT-TATT------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------AAGAT--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------TAAACTATCTG---TTAAC TACAAAGCTGTAAAGATCATTCTTTGAATTTAACATTTTACTTT--AGTATAAATCCTAAAGTGTAAATGTAATGTGTAA TCCGAAAATCTAAGTCTGAAGCAT >Homo_sapiens CCTA--ACATCTATAATCAAAAGAATATAGTAAGTTACTT----AGTGAT-GTTT------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------AAGAT--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------TAAACTATCTG---ATAAC TACAATATTCTGA-GATTATTCTCTAAACTTAATCTTTTACTTTAGTATATAAATCCTAAAGTATAAGT----------- ---------------CTGAAGCAT Bat166_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------GGGAAATGGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAG ATCTAATGTACAGCATGGT-------GACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGAT CTTAAGTGTTCTCACCACACA----CAAAAAAATG-------GTAAC--TA--------------------------TGT GAGG-TGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTT-GTA CACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGG------AAAAA----------------- -------------------------------------------------------------------------------- --- >Canis_familiaris TAAAGCTTTATTCA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------TCATTCTTC---CAAATGGC-TAATGG--CAAACTGG-AAAGAGTT---AAAAAT GTGATTGAAT---------------AAAGATGATCAAAAGGTGCAAACTTCCAGCTGT--AAGAT----AATCACAGGGG GTGTAATGCACAACGGGAT-------GACTAGAGGTAACACTACTGCATGCTATGTTTGAAAGTTACTAAGAGAATAAGT CCTAAAAGTTTTCATCATTAG----AAAAAAATATTTTGGGGGTAACTATGAGTTGCCTCATATGAGTTCAATCCCCTAT GAAA-TGATGG--ATGTTGACTAAACTTA-TGTGGTAACCATTTTACAA-ATAT--ATATGCCACGTGTTTATGCC-ATA CAC-TTAAATTTA-TGTAGTACTGTATGTCAATTTTATCATAATAAAACTGA------AAAAAAATTCCAAAGTAAAAAA --------------GAAAATATGATTGAAT---TAAAAGCTCTAATAAATGTCAGCTTATTGCTCCAATAATTGCTATTG CTT >Felis_catus TAAGTCTTTCTCCA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------TCATTCTCT---CAAATGGC-TAATGG--CAGACTGG-AAAGAGTT---AAAAAT GTGATTGAAT---------------AAAGATGGTCAGAAGGTCCAAACTTCCAGTTGT--AAGATAAATAATCACAGGGG ATGTAATGCACAGCATGAT-------GACTATAGTTAACACTTCTGTATACAATATTTGAAAGTTGCT------------ -------------------------------------------------------------------------------- -----------------------------------------------------------------------------GTA CCACTTAATCTTA-TACAGTGCTGTATGTCAATTATATCTCAATAAAACTA-------AAAACAATTTTAAATTAAAAAG AAAATGAAAGA---CAACATATGATTGAAT---CCGAAGCTTCGATCAATGTCGCCTTAGTGCTCCAACAATTGCTATTG CTA >Manis_pentadactyla TAAA----TATTCA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------CCATTCTTT---CAAATGGC-TAATGA--CAGACTGC-AAAGAGTT---AAAAAT GTGATTGAAT---------------AAAGGTGGTCAAAAAGTACAA-TTTATAGTTAT--AAGATAAAAAATTACTGGGG GTATAATACACAACATGATGACTGCAGACTACAGTTAACACTTC-ATATGGTATATTTGAAAGTTGCTAAAAGAGTAAAT CTTAAAAGTTTTCACAAGGAA----AACAAAAAAATTTTT--GTAAC--TA--------------------------TGT GAGATTAATCA--ATGTGAACTAAATT------GGTGATCATTTTGCATTATCT--GTATATCAAGTCA---TGCT-GTA TACTTTAAATTTATTATAACACTGTATGTCAATTATACCTCATTAAACTTGA------AAATTAAAAAAGGAA------- --------------AATAATATAATTGAAT---CAGAAGCTCTAATAAATGTCAGCTTATTGTCTCAACAATTGCTATTG CTG >Sus_scrofa TGAAGTTTTAATCACTGTGGCTTTTTTTTTTTTTTTTTTTCTTTTTAGGGTCAGACTTGCAGCATATGGAGGTTCCCAGG CTAGGGGTCAAATCGGAACTACAGCTGCCAGCCTACACCACAAGCCACAGCAACGCCAGATCTGAGCCAAGTCTGTGACC TACACCACATCTTCTTAACCCACTGAGAGAGGCCAGGGATCGAACCCACAACTTCATGGTTCCTAGTCGGATTCTTTTCC ACTGCGCCATGGTGGGAACTCCGAGTCATTGCTTTTTCAAATGGC-TAAAAG--CAGATTGG-AAAGAGTT---TAAAAT GGGATTGAAT---------------GAAAATGGTCAAAATACACAAACTTCCAGTTAT--AAGATAAATAATTATTGGGG AT-TAATGCACAACCTGAT-------GACTGTAGTTAAC--TGCTATATGGTACATTTGAAAGTTGCGAAGGGAATAAAT TCAAAAGTTTCTCATCACAAG----AAAAAAAGTTTTT----ATAAC------------------------------TAT GAGG-TAATAG--ATGTTAACTGAGCTTATTGTGTTAATCATTTTGCAATATAT--GTAGGTCAA-TCATTATGTTGGTA CACCTTAAATTTA-TACAGTGCTGTATGTTAATTATA--ACAATGAAACTGA------AAAATAAAAATAATAAAAAGAT ATAAAAAATTT---AAAAACATGATCAATT---TGGAAGCTCTAATAATTGTCAGCTTAGGGCTCCAATAATTGCTATTG CTA >Bos_taurus TGAATCTTTAATCA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------TCATTTTTT---CAGATGGC-TAATAG-----ACTGGAAAAGAGTT---TAAAAT GTGAGTGAAT---------------GAAGGTGGTCAATAGATACAACCTTTCAGTTAT--AAGATAAATAATTACTGGAG ATGTAAGGAACAACATAAT-------GACTACAGTTAACACTGCTGTATAATATATTTGAAAGTTGCTAAAGGAATAAAT CCTAAAATTTCTCATCACAAG----GAAAAAAAATTTT----ATAAC--TA--------------------------TAG -----------------TCATTGAACTTACTGT--TAATAATTTTTCAGTGTAT--GTAGGTCAAGTTATTATGCT-GTG CACCTTAAATTTA-TAGAGTGCTGTATGTCAGTTATATCTCAATAAAACTGA------AAAAGAAAACTAGTAAAAAGAA ATAAAAATTTT---AAAAATATGATGGATT---CAGAAGTTCTAATGAATGTCAGCTTACAGCTCAAACAATTGCTATTG CTA >Equus_caballus TAAATCTTGATTCA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------TCATTTCTT---CAAATGGC-TAATGG--CGGACTGG-AAAGAGTT---AAAAAT GTGATGGAAT---------------GAGGGTGTTTAAAACGTACAAACTTCCAGTTAT--AAGATAAATAAATACCGG-G TTATAATGCACAACACGAT-------GCCCATAGTTGACATTGCTGTATG-TATATTTGAAAGTTGGTAACAAAGTAAAT CCTAAAAGTTCCCATTACAAG---GGAAAAAAAATTTTTT--GTAAC--TA--------------------------TAT GAGG-TGATGG--ATGTTCACTAGATTTATTGTGGTGATCATTTTGCAATATAT--GTA-GTCAAATAA----------- ----------------------------------------------------------AAAAGAAAAAAGAAAAATAAAT AAAAGGA-------AAAAACATGATTGAAT---CAGGAGCTCTAATAAATGTTAGCTTATTGCTGCAACAATTACTATTG CCA >Ceratotherium_simum TAAAGCTTTATTCA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------TCATTCCCT---CAAATGGC-TAATTT--CAGACTGG-AAAGAGTT---AAAAAT GTGATTGCAT---------------GAGGGGGGTCAAAAGATACAAAATTCCAGTTAT--AAGATAAATAATTAATGG-G TCGTAATGCATAACATGAC-------GACTACACTTCACATTGCTGTAAGGTATGT------------AAGAGATTAAAT CTTGAAAGATCCCATCACAAGAGGAAAAAAAAAATTTTTTTTGTAAC--TA--------------------------TAT GAGG-TGATGG--ATATTAACTAAGCTTATTGTGGTAATCATTTTGCAATATAC--GTAAGTCAAGTGA----------- ----------------------------------------------------------AAAATAAAAAAAAGAAAAAAGA AAAAAAAA------GAAAATATGATTGAAT---CAGAAGCTCTAATAAATGTTAGCTTATTGCTCCAACAATTACTATTG CTA >Myotis_myotis TA-TGCTTTCTTCC------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------TTATTCTTT---CCAATGGCTAAATGG--CAGACTGG-AAAGAGTT---AAAAAT ATGGT----C---------------TAAGGTGGGCAGAAGGTACAAATTTCCAGTTAT--AAGATAAATAATTACTGGGG ATGGAATGTGTAATATGAT-------GACTACAGTTAACATTGCTGTACGGTATGTTTGATAGTTGCT--CAGAGTAAAT TCTAGAAGTACTCATCACAAG----GAAAAACATTTTATTTTATAAG--CA--------------------------CAT AAGG-TAATGG--ATGTTAACTAAACCTACTGTGGTGATCA-TTTGTAATATAT--GTACATCAAGTCATCACGCT-GTA CACCCTCACTTACATATGGTACTGTGTGTCAATTATATCTCGATAAAACTGG------AAAATAAACCAAAAAAAGGAGA AA------------AAATACATGATTGAAT---CAGAAACTCGAATAAGCGTCAACTTATTGTTCCAACCATTGCTATTG CTG >Rousettus_aegyptiacus TAAAACTTTATTCA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------TCATTCTTT---CAAATGGCTTAATGG--CAGACCAG-AAAGAGTT---AAAAAT GTGATTGAAT---------------GAAGGTGGTCAAAAGGTACAAACTTCCAATTAT--AAGATAAATAATTATTAGGG ATGTGATGTGAAAAATGGT-------GCCTATAGCTACCACTGCTGTA-GGTATGTTTGAAAGTTGCTGATAGAGTAAAT CCTAGAAGTTCTCATAAGAAG----AAAAAAAAAGTTTTTTTGTAACTATA--------------------------TAT GAGG-TTATGG--ATGTTAACTAAACTTAATGAGGTAATCATTTTGTGATATAT--GTATGTCAAGTTATCATGCT-GTA CACCTTCAACTTA-TACAGTGCTATATGGCAATTATATCTCAATAAAACTAACCAAATAAACAAAAATAAACAAACAAAC AAAAGAAACAG---AAAAACATGATTAAAT---CAGAAGCTCTAATTTATGT--------TGCTCCAACATTTGCTGTCG CTA >Condylura_cristata TAAG------TTTA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------ACCTTTTTTAAAAAAATGGC-TAATGG--CAGACATT-AAAGAGTT--------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------AAAAAAATAACTGAGT---CAGAAACTCTGCCAAATGTTATCTTATGGCTCCAACATTTACTACTG CTG >Sorex_araneus CATAGTTTTACTTG------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------CCATATTTT-TCCAGTTGG--TTACAGTGCAGACAGC-AAGGAGTT--------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------AAAAATTAGAATTCTT---TAGAAGCT-----------------GTGGCACCAATAATTGCTGTTG TTA >Homo_sapiens TAATGCTTTGCTTA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------TCATTCTTT---CAAATGGC-TAATGG--CTAACTAG-AAAGAGTT--------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------AAAAATATGATTGAAT---CAGAAGCTCTAATAAATGTTAGCTGATTTCTCCAACAGTTACTAAAG CTA Bat171_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------TTTTTC------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------CAGCTTTATTGAGGTATAAT--------------------------- TGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGAT-ATACGTATACATTGTG-AAATGATTACCA CAATCAAGCTAATTAACATATCCATCACC--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------- >Canis_familiaris TAAG-AAATTTTCCAATCCATGTAAAAGTTGCAAGATGCTATATGATTT---CA-----------TTAATTTTA---TTG AGAGTTAAGTAGTTTTATTTTTTTGAAATCTCACTTCTTTATTTCCAGACTGCGTGTCAGTTTTATTTGCATTGAATACC ACATAATAATCATGTCAATGTAAAATATTAAAGAGGGACTAGAGTGTCATTGTAAGGAAATATCTTCATCAACTAAATTA CCTTTTTTTTTTTTTCTTTTTTACTTTTTTAGTCAGGTTTATTGAGGAATAATTTAGAGAATTAAGGAATTTTATTGAGG TGACATAG-ATTATTATGTCAGTTTTAGGTATATAACATGA---TTTGATAATACTTATATACTGTA-AAATGATTACCA CAGT----TTAGTGA--ATATC----------TAATAATTCA-T---GTTTGAAA----TCACC-TTGG-------AAAG T-------AGA--CT----------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------TTTCTT---TTGGTTGTTAAA >Felis_catus TAAG-AAATTTCCCAATCCGTGTGGAAGTGGCAAGATGCTATCTGATTT---CA-----------ATAATTTAA---TTG AGATTGAAG----------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------TAATTTTATTGAGAGAG--C--------------------------- TGACATAT-AATATTGCATCAGTTTTAGGTATGTAATATGATGATTTGAC-ATATGTATATACTATA-AAATAATTACTG CAGT----TTAGTGA--CTATC----------CAAACATTCA-G---GTTTGAAG----TCACCCTTGG-------AAGG T-------AGAC-------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------TTTTTT---GTTGTTGTTAAA >Manis_pentadactyla NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT---CA-----------GTAATTCAG------ ---------------GGGTTT------CCCCCTGCCC------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------TGGTTTTACTGAGATACAAC--------------------------- TGACATAT-AATATTAAATTTGTTTTAGTTATTTAACATGACGATTTGAT-ATATGTATATATTGTG-AAATGA-CAGCA CAGTAAATTTAGTTA--ATATG----------CAATAATTCA-G---GTTTAAAG----TCACC-TTGG-------AAGG A-------GGAATTTTTT-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------TTTTTT---TTGGTTATTAAA >Sus_scrofa TAAA-AAGTTTCCCAATTCATGTGGAAGTGGAAACATGTTTTCTGATTT---CA-----------ATAATTCAG------ ---------------GGGTTC-----------CCCTC------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------CCATTTTATTCAAATATAAT--------------------------- CGATATA--AACATTATTTTAGTTTTAGGTGCATACTGTGATGATTTAAT-A----------------AAGTAATTACTA CAACAGGTTTAGTTA--ACATC----------CAAGAGTTCA-G---GTTTAAAG----TCACC-TCGGAAAATAAAAAA A-------AAAGTCTTTTTGCCTTTTCTAGGGCCGCTTCCCATGGCATATGGAGGTTCTCAGGCTAGGGGTCAAATCAGA GCTGTAGCCACCAGCCTACGCCAGAGCCACAGCAACGCGGGATCTGAGCCTCGTCTGCGACCCACACCACAGCTCATGGC AACGCCAGATCCTTTACCCACTGAGAAAGGCCAGGGATCGAACCCGCAACCTCATGGTTCCTAGTCGGATTCATTAACCA CTGCGCCATGACGGGAACTCCTAAAAAAAATTTTTT---TTGGTTGTTAAA >Bos_taurus TAAAAAAATTTCCCAACTCATGCGGAAGTGGCAAGATGTTTTCACAATT---CACAATTGCTTTCACAATTCAC------ ---------------AATTGCTTTCACAATTTCCTTC------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------TCATTTCACTGAAATATAACT-------------------------- TGAGATAT-AACACTGCATTAGTTTTAGGTAAATAACATGATGATTTAAT-ACATGTATGTATTGTG-AAATGATTACCA CAGTAAATTTAGTTA--ATACC----------CAATAATTCA-G---GTTTAAAG----TCACC-TTGG-------CAGG T-------AAAATTTTTT-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------TTTTTT---TAGGTTGTTAAA >Equus_caballus TAAGAAAATTTCCCAATCCATGTGAAAGTTGCAAGATGTAATCTGATTT---CA-----------ATAATTTAG------ ---------------AATTTC---------CCCCCTC------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------CAGTTTTATTGAGATATAAT--------------------------- CGACATAT-AACATTGTATTGCTTTTAGGTGTATAACATAATGATTTGAT-GTATGTATATACTGTGAAAATGATTACCA CAATAAGTTCAGTTA--GTATC----------CAATAATTCA-A---GTTTAAAG----TCACC-TTGG------AAAGG T-------GGAATCT----------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------TTTTGT---TTGGTTGTCAAA >Ceratotherium_simum TAAGAAAATTTCCCAATCCATGTGGAAATGGCAAGATGTTATCTGATTT---CA-----------AAAATTTCG------ ---------------AGTTTT-----------TCCCC------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------CAGTTTTATTGAGATATAAT--------------------------- TGACATAT-AACATTGTGTTAGTTTTAGGTGTATAACATGATGATTTGAT-ATATGTACATATTGTGAAAATGATTACCA CAATAAGTTTAGTTA--ATATC----------CAATAATTCA-G---GTTTAAAG----TCACT-TTGG-------AAGG T-------GTAATC------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------TTTTTT---TTGGTTGTTAAA >Myotis_myotis TAAAAAAAATTTCCCAATCCTATGGAAGTGGCAAGGTGCTATCTGATTT---CA-----------TTAATTCAG------ ---------------GGGCTC---------CCACCCC------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------CAGTTTTATTAAAATATAAT--------------------------- TGACATAT-AACATTGTACTAGTTGTAGGTGTATAACATGATAATTTGAT-AGAAGTAT-TATTGTG-AAATGATTACTA TAATAAGCTTAGTTA--ACAGC----------CAGTAATTCA-G---ATTTAAAG----TCACT-TTGG-------AAGG A-------ATAATCTTTTTGTTTGTATATTTG------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------TTTTACTGGTTGGTTGTTAAA >Rhinolophus_ferrumequinum TAAGAAAATTTCCCAATCCACATGGAAGTGGCAAAATGTCATCTGATTT---CA-----------ATAATTCAG------ ---------------GGTTTC--------CCCACCCC------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------AGATTTACTGAGATATAAC--------------------------- TGACATGT-AACATTGTTTTAG------GCATATAACATGATAATTTGAT-ATATGTATATAATGTG-GAAGGATTACCA CAGTAAGTTTAGTTA--ATATT----------CAATAATTCA-G---GTTTAAAGTAACTCATC-TTGG-------AAGA A-------ACAATCTTTT-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------TTCTTTTTTTTGGTTGTTAAA >Condylura_cristata TGAGAAAATTTCCCAATCCATGTGGAACTGGCAAGATGTTATCTGATTT------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------CAATAATTCA-G---GTTTAGCG----TCACC-TCAGTGATAAGGAGG TAGAAGGCAGAATCTTTTTTTTT--------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------TTTTTT---GTGGTTGTTAAA >Solenodon_paradoxus TAAGAAAATTTTCCAACCCTTGTGGAAATGACAAGATGTTATCTGATTT------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------AAATAACTCAGG---GTTTTTAG----TCACC-TTAGTAATAAGGAAG T-------GGAATTTTT--------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------ATTTTT---TTGGTTGTTAAA >Homo_sapiens GAAGAAAATTTCCCAATCCATGTGGAAGTGGCAACATGTCATCTGACGT------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------CAATAATTCA-G---GTTTAAGG----TCACC-TTAGTGTTAAGGAGG T-------GGAATCTCTC-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------TT-------TTGGTTGTTAGA Bat172_LINE >L1MA9_3END -------------------------------------------------------------------------------- --TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATAT ACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTACCA----------- ---------------------------TTTTTTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAAATTTCAA GTATAC----AATACAGTATTATTAAC---------TATAGTCACCATG---------------------CTGTA-CATT AGATCTCCAGAACTTATTCATCCTGCATAACTGAA-ACTTTGTACC---------------------------------- -------------------------------------------------------------------------------- ----- >Canis_familiaris TTGTTGCTATTAT------TATTTTTACCTTTC--AGTTT-ATGCTTTTGTGGCATAAT---CAATT----------TT- -------CCAGTTTTGTTAAGATATGATTAATATAC-AGAACTGCATATGTTTAAGATGTATAGCAT-ATAATTTGATTT ACATAT--ATCATGAAATTACTACCAC----AATTTAATTAAC--ATTCATTGTCTCCTGTAGTCACAAAA--------- ---------------ACATTA------TTTCCCT---TGTGATAAGAACTCTTAAGATTTATTCTTTT---AACTTTCAT TCATACCCAAAATATAGAACATGTCACAAATTTGTGTGTCATCCTTGTA-AGGGGTCATACTGA---TCTCTGTATCATT CCAATTTTAGTATATG----TGCTGCCAAAGTGAGCA------------CTACGTATGTATATA---------------- ---------------------------TGATGCTTATTTCAGTAGACCTTCCATC-------TTTGTCAGACAAAAAAT- TTCTT >Felis_catus TTGTTGCTATGATTTT---TTTTTTTACCTTTC--AGTTT-GTGCCTTTGTGGCATAAT---CAGTC---------TTT- -------CCAGTTTCACTGAGATATAATTGACATAC-AGCACTGCATTCATTTAAGAGACACAGCATAATGATTTGATTT ACATAT--ATCATGAAGTAATTACA------AGTTTACTTAAC--AT-AAGTATCTCATACAGTTACAAAA--------- ---------------AAAATA------TTTTTCT---TGTGATAAAAA--CTTAGGAT-TACTATCTT---AACTTTCAT TTATAGCAAAAATATGGAACAGTTCACAAATTTGTGTGTCATCCTTATG-GGGGGCCATGCTAATCTTCTCTGTATCATT TCAGTTCTATTATGTG----TGCAGCCAAAGTGGGCA------------ATCTATATCTATATC---TGTATCTATCTAT ATCAATATCTATATGCACACACACACATAATGCTTATTTCGGTAGACCTTCCATCTTCCATTTTTGTCAGACAAAGCAA- TTCTT >Manis_pentadactyla -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------TACTGCCTAAGTGACCT------------CATTCTATTTTTT------------------ ---------------------------TAATGCCCATT-CAATGGACCCTCCATC-------TTTGTCAGAAAAAGCAA- TTCTT >Sus_scrofa TTGTTGCTATTAT------TATTAT------------------------------TAAT---CAATT---------TTT- -------CCAG-----------TACAACTGACAAAC-ATTACTGTGTAAGTTTAACGTGCATAACACAATGGTTCAACTT AGGTAT--ATCATGAAATGATTACTAC---------ATTTCAC--AT-CATCATTTCATATAGATACATCATCTAATAAG ATACAAAAAAAAGAAAAAATA------TTTTCTT---TGTTATGAGA------AGGATCAATGCTCTTAACAACTTTCAT ATATACCAAAGATATGGAATGCTCCACAAATTTGCATGTGATCC-TGTGCAGAGGTCATGTTTATCCTCTCTCTATCACG GCAATTTTAACATACA----TGCTGCCAAAGCTAACA------------CGATCTATTTT-------------------- ---------------------------TAATACCTATTTCA-TAGACCTTCCATC-------TTTACCAGACAAAACAA- TTCTT >Bos_taurus TTGTTGCTATTCT------TATTATTATCTTTC--AATTTCATGCTTTAATGGCATAAT---CTATT-------TTTTT- -------CCAGTTTCATTGAGATGCACTGGATGTAC-AGCACTGTATAAGTTTAAGATGTATAGCATAATGATTTGACTT ACATAT--ATCATGATATGATTACTACA---AGTTTAA----------CATCGTCTTATACAGATCCATAATCTCATCA- TTACAAAAAAAGAAAAAAATA-------TTTTAT---TGTGATGAGA------AAGATCAATTCTCTTAACAACCTACAA ATATACCAAAAATATGGAATCCTTCACAAATGTACATGTCATCC-TGTA-CAGGGCCATGTTAATCTTCTCTGCATCATT CCAATTTTAGCATATG----TGCTGCCAAAGCTAGCA------------CAATCTATTTTT------------------- ---------------------------TAATGCCTATTTCAGTAGACCATCCATC-------TTTACCAGAC-AAGCAA- TTCTT >Equus_caballus TTGTTGCCATTGTTATTATTATTATGACCATTC--AATGTGATGCCTTTATGGCATAAT---GAATCTA----TTTTTT- -------CCAGTTTTATTGAGCTATAATTGACATAC-AACACCATATAAATTTAAAATATACAGCATAATGGTTTGACTT ACAAAT--ATTATGAAATGATTGCACCA---AGTTTAGTTAAC--ATCCATCATCTCAGATAGTTATAAAA-------AA AGAAAAAGAAAAAGAAAAATATACGTTTTTTTCT---TGTGATGAGAACTC--AAGATTTACTCGCTTAAGAGCTTTCAC ATATACCAAAAATATGTAACGCTTCATGAATTTACATGTCATCCTTGTG-AAGGGCCATACTAA---TCTCTGTATCATT CCAATT-TAGTAGATG----TGCTGCTGAAGTGAGCA------------CCAACTATTTTTTT----------------- ---------------------------TAATACTTATTTCGATAGACCTTTGGTC-------TTTGTCCGACAAAGAAA- TTCTT >Ceratotherium_simum TTGTTGTTGTTATTATTA-TATTATTACCATTC--AATTTGATGTTTGTATGGCATAAT---TAATCTA----TTTTTT- -------CCAGTTTTATTGAGATATAATTGACACAC-AGCACTATATAAATTTAAGGTGTACAGCATAATAATTCGACTT ACATAT--ATTGTGAAATGATTACTACA---AGTGTAGTTAAC--ATCCACCATCCCATATAGTTACAAAA--------- -CAAAAAGAAAAAGAAAAAAA------CTTTTCT---TGTGATGAGAACTCTTAGGATTTATTCTCTTAGCAACTTTCAC ATATACCAAAAATATGGAGCACTACATGAATTTGCATGTCATCCTTGTG-GGGGGACATAGTCA---TCTCTGGATCATT CTAATTTTAGTGTATG----TGCTGTT-AAGTGAGCA------------CAATCTATTTTTTC----------------- ---------------------------TAATGCCTATTTTGGTAGACCTGCGACC-------TTTGTCAGACAAAGCAA- TTCTT >Myotis_myotis TTGTTGCTAATATTAT---AATTATTACTGTTCAAAATTTGATGCTTTGA-GATATGAT---CAATCTA-----TTTTT- -------CCAATTTTATTGAGATATAATTGATATAT-AGCACTGTAT--GTTTAAGGTATACAGCATAATGATTTGACCT ACATTT--ATCATGAAACATTTACCACA--------AGTTAAT--ATCGGTCATCTCATGTCAACACAA----------- ------------------ATATATATTTTTTTCT---TAAGAAGAGAGCCCTTAGGACCTACTCTCTTGACAACTTTTAT ATATAACTGAAATATGGAATGCTTCACAAATTTGTGAGTCATCCTTGTGCAGGGGCCATGCCAGTCTTCTCTGTGTTGTT GCCATTTTAATACCCGTAGGTGCTGCTGAAGTGAGCA------------CAATCTGCTTTTC------------------ ---------------------------ACATGCCTGTTTTGATAGATCTTCCAT--------TTTGTCAAACAAAGCCA- TTTTT >Rousettus_aegyptiacus TTGTTGCTATTATTAT---CATTATTAGTGTTC--AATTTGATGCGTCTATGATGTAAC---CAACCTC----TTTTTT- -------CCAGTTATATTTAGAT--------------AAAACACTATCAGCTTAAGGTGTATA-CATAATGATGTGATTT ACATAT--ATCATGAAACTTTTACCACA---GGTATAATTAAC--ATCCATCATCTCATATAGAGACGAAA--------- -----AGAAAAAGAAAAAAAA------TTTTCCT---TGTGATTAGAACTCTTCGGAACTATCGTCTTGACAACTTTCAT AAACTCCCCAAATATGAAACACTCCACAAATGTGAGCATCATCCTTGTGCAGGGGCCGTGCTAATCTCTTCTGTATCATT CCAATTTTAGTGTATG----TGCTGTCAAAGCGAGCA------------CAGTCTATTCTTTTT---------------- ---------------------------AAATGCCTATTTCAGTAGAGCTTCCAT--------TTTGTCAGACAAAGCAG- TTCTT >Condylura_cristata TAGTTGCAAT---------CATTATCACCTTT---AAGTTGACATTTTTATAGCATAAT---CAATATATTTTTTTCTA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------AAGTGCCTATTAAAATAGATGTCT-----------ATTGTCAGACAAAGCTAC TTTTT >Solenodon_paradoxus TTGTTGCTATTAT------TACAT------TTC--AATTTGATGTTTTTATCATGTAAT---CAATCCA--TATTCCTA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------AAATGCCTATTTTTGTAGACTTCCCATC-------TTTGTCTGACAAAGCAA- TTCTC >Homo_sapiens GTATTACGATTTTGATCATGACTATTACCTTTC--AATTTGATGCTTTTATGGCATAAT---CAATCTA----TTGTTA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------AAGTGCCTATTTTGGTACACCTTCCATC-------TTTGTCTGAGAAAGCA-- TTCTT Bat174_LINE >L1MA9_3END -------------------------------------------------------------------------------- ----------------------------------------TTTTTCCAGCTTT--------ATTGAGGTATAATTGACAA ATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATATACGTATA----CATTGTGAAATGATTACCACAAT CAAGCTAATTAACATATCCATCACCTCA---------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------CATAGT TACCAT---TTTT-------TTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAAATTTCAAGTATACAA-TAC AGTATTATTAACTATAGTCACCATGCTGTACATTAGATCTC--CAGAACTTATTCATCCTGCATAACTGAAACTTTGTAC CCTTT--------------------------------------------------------------------------- ------- >Canis_familiaris CAAATCTTTCTAGGATAAATTCATCTTTATCTGCCACGGGTCTTGAGGAC---TACTTGTATTTTTT------------- ---TTTAAGCAAAAGAATTTACTAGTAT----------TATTTTTAAAGGTTTTT--AAAAATTGAGATATAATTGATAC AC-AACATTATATTAGTTTCAAGTGTACAACTTCATGATTTCATATTTATAGA----TATTACAAAATAATCACC--AAT AGGTCTAGTTAA--GATCCATCAGCATA---------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------TGCAGT TACACTTTGTTTTGTTTTGGTTTTTTGCAATGAGAACTTTTAAGATCTACTCTCTTGGCAATATTCAAGTATGCAA-TAC AGCAAGATTCACTATAGTCA-----------------TGCC--CAGGACTTATTTATTTT--AGAATTGGAA-------- --------TACTT---GTATCTTTT---GTCTCTTACTTCATATCTAAAATTA--------CTATCAAATC-AGGAGTAG CTCCTCT >Felis_catus GAAATCTTTCTAGGATAAATTCGTCTTTACCTTCCATGGGTCTTGAGGGC---TACCTGTATTTTTT-----------TT TCCTTAAAGCAAAAGTATTTATTACTAT----------TATTTTCAAAGATTTTT--TTTAATTGCGGTATTATTGATAT AT-AACACTATATTAGTTTCAGG--TTCAAATTCACGATTCCATATTTGTGTG----TATTGCAAAATGATCACCGCATT GGATCCAGTTAA--GATCCATCAGCACACAGGGGCGCCAGATGGCTCAGTCAGTGAAGCGACCAACTCTTGATTTCCGCT CAGGTCACGATCTCATGGTTCGTGGGTTGGAGCCCCATGTGGGACTCGGGGCTGACAGCATGGAGCCTGCTTGGCATTCT CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCCCTCTCTCCCCTCCCCT GCTTGTGCTCTGTCTCTCTCTCTCAAAATACATAGATAAACATAAACATGAAAATAAAAAGATACATCAGCATACGTGGT TACGC----TTTT-------TTCTTTTCGGCGAGAACTTTTCAGACCTACTCTC--AGCAATATGCAAATACGCAGTTAC CGCAAGATT----ATAGTCACCGTGCAGCCCTTCACGTCC---CAAGACTTATTT-------ATAGCTGGAT-------- --------TACTTCTTGCACCTTTT---GTCTCTTACTTCATATCTAGAATTA--------TTATCAAATC-AGGAGGGG CTTCTCT >Manis_pentadactyla GAAATATTCCCAAGATGAGT-GGTCTTTGCTTTCCATGGGTCTAGAGAGC---TGCCTGTACCTTTC------------- -TTTTAACATAAAAATATTTAT----------------TTATTTACTAGGTTTTTAAAAAAACAGAGTCATAATTGACAC AA-AACATTTTATTAGTTTCAGGTATACAACTTAATGATTCAATATCTGTATA----TTTTGCAAAATGATCACCAC--- AAGTCTGGTTAA--CATCCATCACTGTA---------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------CTTATT TACAACA--TTTT-------TTTCTTGTGATAAGACCTTTTAATACCTACTCTATTAGCAACTTTAAAATATGCAA-TAC AGTATCATTAACTATAGTCACCATGCTGTACATTATACCCCCTCAGGACATACTTATTTT--ATAACAAATA-------- --------TACCT---GTATTTTTT---GTCTCTTTCTTCATATCTGGTATTA--------TAATCAAATC-AGGAGTAG CACCTCT >Sus_scrofa GAAATCTTTCTGGGATAAATTTATCTTTATCTTTCATAGGTCTTGGGGGC---TACCTGAATCTTTG------------- AAAAACCCACAAAAATATCTATTTCTGTATTTATT---ATTTTTAAAAGATTCAT--AAAAATTCAAGTATAGTTGACAT ---AACAGTATGTTAGTTTCAGGTATACGACTT---GATTCAACATTTGTACA----TATTGCAAAATAATCAC---AGT AAGTCTAGGTAA--CATCCGTCACCATC---------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------TATAGG GACACATATTTTT-------TTTTCTGTGTTCAAAG-TTTTAAGATCTATTCTTTCAGCAACTTTTGAATATGCAA-TAT GGTGTTATTAACGAGAG-CATCATGC-ATATATTACATTCT--CAGGACTTT----------ATCACTGGAA-------- --------TACCT---GTACCTTTT---GT--CTCATTTTATAGCTAGGATTA--------TAATCAAATC-AAGGGATT CTCCTCT >Bos_taurus GAAATCTGTCTAGGATAAATTTGTCTTTATCTTCCATAGATCTTGGGGGC---TATCTGTATTTTTT------------- ----TAATCTAAAAATATTTATATATTTATAA------TTTCTAAAAAGATTTTT---TAAATGTGGGTATAACTGACAT AT-AACAGTATATTAATTTCATGTATACAACTTAATGCTTCAGTGTGTGTATATTTTTACTACTAAATGATCACCACAAT AAGACTAGG-----CACTTGTCACCATACAGG------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------CATAGT TAAAA----TCTT-------TTTTTTGAGTTAAGAGCTTTTAAGGTCTCCTCCCTTAGCAACTTTCAAATACGCGA-TAC AGTCTTATTAACTACAGTCACCATGATATATATTATATTCC--CAGGACTTAATTATTTT--GTAACCTAAA-------- --------TGCCT---GTACTTTTT---GCCTCTTACTTTGTATCTATAATAA--------TAATCAAATG-AGGAGTAG TTCCACT >Equus_caballus GAAATCTTTTAGAGATAAATTTGTCTTTATCTTCCATGAGTCTTGAAGGT---TACCTGTATCTTTT-----------TT GTTTTTACACAAAAATATTTA--------------------TTTTTTAGATTTTT--TATGATTGCGGTATAATTGACGT AT-AACATTATATTAGTTTCAGAGGTACAATTTAATGATTCAATATTTGTATA----CATTGCAAAATGATCACCATAAT AAGTCTAGTTAA--CATGCATCTCCATA---------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------CACAGT TACAAAACTTCTT-------TTTCTTGTGATGAGAACTTTTGAGATCTATCCTCTTAGCAACTTTCAAATATTCAA-TTC AGTATCATTAACCATAGTCACCATGCTCGACATT---------------------------------------------- ---------ACCT---GTACCTTTT---GT--CTTACTTCATTTCTAGTGTTA--------CAGTCAAATC-AGAAGTAG CTCCTCT >Tapirus_indicus GAAATCTTTTTGAGATAAATTTGTCTTTATCTTCCGTGGGTCTTGAAGGT---TACCTGTATCTTTT---TTTTGTTTGT TTTTTTACACAAAAGTATTTA--------------------TTTTTTAG-TTTTT--AAAAATTGAGATATAATTGACGT AT-AACATTATATTAGTTTCAGGTGTACAATTTAAGGATTCAATGTTTGTATA----TATTGCAAAAGGATCATCACGGT AAGTCTAGTTAA--CATCCATCACTATA---------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------CACAGT TACAAAA--TTTT-------TTTCTTGTGATGAGAACTTTTAAGATCTACTCTCTTAGCAACTTTCAAATATGCAA-TAG AGTATTATTAACTGTAGTCACCACGTTGTACATTATATCCC--CAGGACTCATTTATTTT--ATAATTGGAA-------- --------TACCT---GTACCTTTT---GT--CTTACTCCATGTCTAGTATTA--------TAATCAAATC-AGGAGTAG CTCCTCT >Myotis_myotis GAAATCTTTCTAGGATGTATTGGCCTTTCTCATCCATGGGTCTTGAGATC---TATATGCACCCTTT------------- -CTTTAACATGAAAATACTTACTTACTTATTTATATTATTATTTTTTAGATTTTA-AAAAAATGAAGCTATAATTGTCAT AT-AACA--GTATTAATTTCAGGTGTACAACTTAATGATTTGATATTTGCATA----TATTGCAAAATGATCACCACAAT AAGTCTAGTTAACCCATTTGTTACCACA---------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------CGAAGG TACAAAA--TGTT-------TTTCTTGTGATGAGAACTTTTAAGATCTACTTTCTTAGCAACTTTCAAATAT-------- AGTATTATTAACTATAATCACCAAATTGTACATTAAATCCC--CGGGGCTTATCTATTTT--ATAACTAGAA-------- --------T-CCT---GTACCCTTT---ATCTCTTACTTCATATCTGGTATTA--------TAATCAAATC-AGGAGTAG CTTCTCT >Rousettus_aegyptiacus GAAATCTTTCTAGGATATATTTTCCTTTCCCTTTCACAGTTCTTGAGGGC---TATCTGCACTTTTA----------AAA AAAAAAACACAAAAATATTGATTTATTTTTT-------TTATTTTTTAGCTTTTT--AAAAATTGAGTTGTAATTGA--- ---AATATAATATCAGCTTCAGGTGTACAACTGAATCATTTGATATTTGTATG----TATTA-AAAATGATTACCACAGT AAATTTAGTTAT--CATCTGTTACTGTA---------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------CATAGT TACACAATTTATT-------TTTCTTGTGATGAGAACTTTTAAGATCTACTCTCTTAGTAACTTTTAAATATTCAA-TAC AATATTGTTAACTATAGTTAACGTACTGTGCATTACATCCC--CAGGAACTATTTATTTT--ACAACTGGGATA------ --------TACCT---GTACATTTT---GTCTCTTACTTCATGTCT---CTCA--------TAATCAAATC-AGGAGCAA CTCCTCT >Condylura_cristata GACATCTTTCTAGGATAAATTTGTCCTTAT------AGCATCTTGAGGGT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------TACTT---GTACCTTTT---ATCTATTATTTAATGTCTAGCATTAGGTTGTAATATATAATTC-AGTTGTGG TGCCTCT >Sorex_araneus GAAATCTTTTCAGGGCAAATACGTCTTTATCATTTACTCATCTTGAAGTC------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------TCTCT---------TTT---GTCACTTACTTCGCATCTAATATTA------------GAAAACTAGGAACAA CACTACC >Homo_sapiens GAAATCTTTGTAGGATAGAATTGTC--TATCTTCCATGGGTCTGGAGGGC------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------TACCT---------TTT---GT---GTATTTAATATTTAGTATTA--------TAATCATATC-GTAAGTGT TT---TT Bat180_LINE >L1MA9_3END -------------------------------------------------------------------------GTAATCA TTTCACA-------------------------------------------ATGTATACGTATATCAAAACATCACGTTGT ACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAA-----GCTGGAAAAA----------------- -------------------------------------------------------------------------------- ------------ >Canis_familiaris TACTAA-GCCTCAGCTCTCCGCAA-ACCAGATCTGATGACAAACTGCCAAGTTC---AACAAAATGAAAT---------- --TTGCA-------------------------------------------ATATATACATATATCAAATCATTATGTTGT ATACATTGGTCTCATA----TGTAATATATCAATTTTAGCTCAAGAAACT---GGGGGAGA-----------AATCATCT GGCAT---C--T-GTACCTACATGT---------------------------------TACAAAAGATTATTTGCATACA GTTCCAAGGGTA >Felis_catus TGCTAACGTCTCAGCTCTCTACAA-ACCATTTCTGATGACAAGCTGTCAAGTTC---AACAATATGAAAT---------- --TTGCA-------------------------------------------ATACATGCATATATCAAATCATCATGTTGC ACACATTGGACTGATATGT-TCTTATA--TCAACTATCT--------------GGGGAAAA-----------AGCAATCT GGCAT---CTGT-ACTCCCACAT-----------------------------------TAGGAAGGATCGTTTGCCTGTA GTTTCAAGGTCA >Manis_pentadactyla CGCTAA-GCCTCACCTCTGTGCAA-ACCAGATCTGATGACAAATTGTCAAGTTC---AGCAACATGGCTT---------- --TTACA-------------------------------------------ATATAGACAGACATCAAACCAT---GTGGT CCACCTTGGACCA-------CGTTACATGTCAAGTATATCTCAATAAACCCGAGCAAAAAA-----------CCAACATT GACAT---CCCT-GTTCTCACACATACTGTAAAACATTTACAAAAAGAAACATAGAACAAAAAAGGATTGTCTGCCTGCA GTTTGAGGGGCA >Sus_scrofa TGCTAA-GCCTCAGTCCTCCACAATGTGAGATTTCATGACAAGTTGTCAAGTTC---AACAATATGGTAT---------- --TTGCA-------------------------------------------------ATATATATCAAATCAT--TGTTGT ACACCCTGGACTAATACAA-AATTATATGTCAGTTATATCTCAATAAAACTAAGGGGGAAAAA---------AACAGTAT GACAT---CCAT-GTTACCACACTT---------------------------------TAAGAAAGACTGTTTGCCTTCA GTTTCAAGGGCA >Tursiops_truncatus TGCTAA-GCCTCAGCTCTCCACAA-ATGAGATACGATGACAAATTGTCAAGCTC---AACAATGTGGCAT---------- --TTGCA-------------------------------------------------GTATATATCAAATCATTATGCTGT ACACGTCAGACTAATATAA-TGTTATGTGTCAATTATATCTCAATAAAGCTGGGGGGGAAA-----------AACAGTGT GACAT---CCAT-GTTCCCAAACAT---------------------------------TAAGAAAGGTTGTTTGTCTGCA GTTTCAAGGGCA >Equus_caballus TGCTAA-GCCTCAACTCTCCACAA-ACCAGATCTGATGACAAACTGTCAAATTC---AACAACATGACAT---------- --TTGCA-------------------------------------------ATATATACATATATCAAATCATTATGTTGT ATACCGTGGACTAATATAA-TGTTATGTGTCAATTCTACCTCAATAAACT---GGAAAAAAAA---------ACCAATAT GACAT---ACTT-CTTCTCACACAT---------------------------------TCAGAAAGATTATTTGCCTGCA GTTTCAAGTGCA >Ceratotherium_simum TGCTAA-GCCTCAGCTCTCTATAA-ACCAGATCTGATGACAAATTGTCAAGTTC---AACAATATGATAT---------- --TTGCATATCATATATATACATATATCAAATATATGTATATATACATATATATATACATATATCAAATCATTATGTTGT ACATCTTGGGCTAACACAA-TGTTATATGTCAATTATATCTCAATGACCT---GGGAAA-------------AAATATAT GACAT---CCAT-GTTCTCATACAT---------------------------------TAAGAAAGATTATTTGCCTGCA ATTTC-GGGGCA >Myotis_myotis TGCTAA-GCCTCAGCTCTCCACAA-ACCAAACCTAATAATAAATTGTCAAGTTG---AACAAAATGACCG---------- --TTGCA-------------------------------------------ATATGCACATATATCTTATCATTATGTTGT ACAACTTTGAC-GAGATAA-TCTTATCTGTCAATTACATCTCAATAAACT---GGAGAAAA-----------AGCAATAA AACAT---CCAT-GTTCCCACACAT---------------------------------CAAGAGAGATTGTTTGCCTGCA GTTTCAAGGGCA >Rousettus_aegyptiacus TATTAA-GCCTTAGCCCTCCACCA-ACCAGATCTGATGAAAAATTTTCAAGTTC---AACAATTTGACAT---------- --TTGCA-------------------------------------------ATACCTATGTGTATCATATCATTATGTCAT GCACTTTTAACTAATATAA-TGCTATATGTCAATTATATCTCAACAAACTGAAGAAAAAAAAAAAAAAA---GCCAATAC AACAT---TCAT-GCTCCCACACAT---------------------------------GAAGAGAGGGTGCTTGTCTGTG ATTTCAAAGGCA >Condylura_cristata TA-TAT-GCCTCAGCACTCCAGAG-ACTAGCT---ATGACAAACTGTCTAGTGC-------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------AATGACAA GACAT---CTACAATTCTTATACAT---------------------------------TTAGAAAGATCA----CCCACA GTTTCAAGGACA >Uropsilus_gracilis TGCTAA-GCCTAAGCACTCCAGAG-ACCAGACATGAC----AACTGTCTAGTGC-------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------AATGA--- --CAT---CTT--GCTTTTACATAT---------------------------------TTAGAAAGATTG----TCCACA ATTCCAAGGGCA >Cavia_porcellus TCCAGA----TCTGTCACCCACAA-GTCAGATCTGATGAGAAA--GTCAATATT-------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------AACAATCC TACAT---CCAT-ATTTTTACATAT---------------------------------TAAGAAAGACTATTTGCTTTTA ATGCCAAGAGCA Bat189_LINE >L1MA9_3END -------------------------------------------------------------------------------- ------------------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATA-TATTTAAGGTGTACA ACGTGATGTTTTGATATA-----------------CGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATA TCCATCACCTCACATAGTTACCA-----TTTTTTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAAATTTCA AG------------------------------------------------------------------------- >Canis_familiaris TCTTTAGAATTTATCT-----TCTATTATTCTAAATTT---GAAGATATATATAT----------------TGAA---TT CCAATACTATT-TTT----------------ATTGATGTATAATTGAC-TAT-AAGATTATATTGACTTTTAGATATACA ACAT---GATATAGTATTTGTACTGAGAAATATATTGTATGTATTGAGAAATGAT-ATCACTATAAG--TAGTT--GACA TCCATCCCCATACACAGTTACAAAGATTTTTTTTTTCTTGTGACAAGGACTTCTGAGATCTACTCTCT------------ -----TACCAGTACTAC-TTT---AATATATTA-TAGGGTTTAAGGAATAAACCAAAGAAAACAGCGCATGTGAA >Felis_catus TCTTTAGAATTTGATTATTT-TCTG---TTCTGGATTT---AAAAATATGTAAAT----------------TGAA---TT CTAC--------TTT-------------TTTATTGAGGTATAATTGACATAT-AAGATTATATT-ACTTCTAAGTGTACA ACAT---GATTCAATATTTTTATATATTGAGAAA-TATATGTATTGAGAAATGAT-ACCACAATAAG--TAGTT--AACA TCCATCCCCATACATATTTCCAAATA--TTTTTTTTCTTATGATGAGAACTTT-AAGATCTACTACCT------------ -----TACCAATCCTACTTTT---AATATATTA-TAGGGTTTAAGGAATAAACCAAAGAAAACCGCGCATGTGAA >Manis_pentadactyla TCTTTAGAATTTTATTATTT-GCTG---TTTGGGGCTTTA-AAATATATATATATATGTATATA-------TATA---TT CCAATACTATT-TTT-------------TAAATTGAGATGTAATTGACATAT-AACATTATATT-AGTTTCAGGTGTACA ACAT---GATTCGATATT-----------------TGTATACATTACAAAATGATCACCACAAT--GTCTGGTT--AATA TCCATCCCCATACATAGTTACAA----TTTTTTTTTCTTGTGAAAAGGACTTTTAAGGTCTACTCTCT------------ -----TACCAATAC-ACTTTA---AATATATTA-TAGGGTTTAAAGAATAAACCAAAGAAAACAGCGCATGTAAA >Sus_scrofa TCCT-----TTTTGTTCTTT-TCTGCTGTTCTAGATTTTTAAAATATATACATATAT--------------TGAA---TT CCAGTACTCCT-TTA--------------TTGTTGAGTTATAATTGACATAT-AACATTGTATT-AGTTTCAGGTGTG-A ACATAATGTTTTGATATT-----------------TGTATGTATTGAGAAATGATCACCACAGTAAGTCTAGTTTAAACA TTCATCCCCATACATAGTTATAAGAAATATTTTTTTCTTGTAATGAGGACTTTAAAGATATAATCTCT------------ -----TAACAATATCGCTT---------TATTA-TAGGGGTTAAGGAATAAACCAAAGAAAACAGCACATGTGAA >Bos_taurus TCTGTAGGCATTGA--------------TTTTGGGTATTAAAAATGTACATGTGT----------------TGAA---TT TCAATACTACT-TTT--------------TTGCTGAGTTAAAATCGACATAT-AAC---ATATT-AGTTTCAGGTGTAAA ACATAGTAATTCGATATT-----------------TTTATATATTGAGAAATGATCCCATACTTAAGTCTAGTTTAAATA ATTATCCCCATACATACTTACATA----TTTTTTTTCTTGTGATAAGAACTTTAAAGATCTACTCTCT------------ -----TATCAATACTACTTTT---AATATGTTA-TAGGGGTTAAGGAATAAACCAAAGAAAACAGCCCATGTGAA >Equus_caballus TCTTTAGAAGTTGATTCTTC-TCTGCTATTCTGGATTA---AAATATATACATAG----------------AGAA---TT TCAATACTTCTCTTT-------------TTTATTGAGATACAATTGAC-----------ATGTT-AGTTTCAGATATACA ACATTATGATTCAGTATT-----------------TGTGTACATTGAGAAATGATCACCGCTCTAAGTCCAGTT--AGCG TCTGTCCCCATACATTGTTACAAA---TGTTTTTTTCTCGCGATGAGGACTTTTAAGATCTGGTCTCT------------ -----TATCAGTACTACTTTT---AATATATTATTAGGGTTTACGGAACAAACCGAAGAAAACAGCACATGTGAA >Ceratotherium_simum TGTTTTGAAGTTGATTCTTT-TCTGATATTCTGGATTT---AAATATATATATATAGAGAGAGAGAGAGAGAGAA---TT CCAATACTTCT-TTT-------------TTTATTGAGATATAATTGACATAT-AACATTATATT-AGTTTCAGTTGTACA ACATAATGGTTCAATGTT-----------------TCTGTATATTAAGAAATGATCACCACTATAAGTCTAGTT--AACA TCTGTCCCCATACATCATTACAAA---TTTTTTTTTCTTGTGATGAGGACTTTTAAAATCTACTCTCT------------ -----TACCAATACTACTATT---AATATATTA-TAGGGTTTACGGAACAAACCAAAGAAAACAGCACACGTGAA >Myotis_myotis TCATGGAAAGATGAATTTTT-TCTGCTCTTCTGGATTT---AAATACACATAT------------------AGAA---TT CTAATACTATT-TTT----------------ATTAGAACATAA-TGAC--AT-AATGTTATTTT-AGTTTTAGGTGTACA ACATAGTGATTTGAT--------------------------------GAAATGATCACCACAATAAGTCTAGTT--AACA TTTGTCCCCATACATAGTTACAAA----ACTTTTTTCTTGTGATGAGGACTTTTAGGATCTACAGTCT------------ -----CACCAATACTACTTTT---AATATATTA-TAGGGACTAAGGAATAAACCAAAGAAAACAGCGCATGTGAA >Rousettus_aegyptiacus NNNNNNNNNNNTACATATATAAATATGTATATGTATGT---ACATATACACACACATACATACACACACATAAAA---TT CCAATACTACT-TTT--------------TTATTAAGGTTTAATAGAC--------ATTATATT-AGTTTAATGTGTACA ACATAACATTTTGATATT-----------------TGAATATATTGAGAAATGATCACCACAATGAGTCTAGTT--AACA TTTGTCTCCATACATAGTTATAAAAAATGTTTTTTTCTTGCTATGAGGACTTTCAAGATCTACTCTTT------------ -----TACCAATACTACTTTT---AATATATTA-TAGGGTTTAAGGAATAAACCAAAGAAAACAGCGCATGTGAA >Condylura_cristata CTTTCAGAAGTTGATTTTTTCCCTGCTATCTTGGATTTTA-AAATATATATGTAC----------------TGAA----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----TTCCAGTATTACATTT---AATGTATTA-CAGGGGTTAAGGAATAAACCAAAGAAAACAGCACATGTGAA >Erinaceus_europaeus TCTCCAGAAGCTGATTTAAT-G-TGCTATTACTGATTAGCTAAATAT------------------------TGAA----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----TTTCAACACTATTTTT---CATATATTG-TAGGGGTTAAGGAATAAACCAAAGAAAACAGCTTATGTGAA >Homo_sapiens GCTTTAGAAATTGATTTTCT-CCTG---TTCTAGATTT---AAGTATATAT--------------------ACAA----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----TTCCAATGCTTCTTTT---GATATATTA-TAGGGGCTAAGGAATAAACCAAAGAAAACAGCACATGTGAA Bat216_LINE >L1MA9_3END -------------------------------------------------------------------------------- ---------------------------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAA G--GTGTACAACGTGATGTTTTGAT-ATACGTATAC-ATTGTGAAATGATTACCACAATCAA-GCTAATTAA--CATATC CATCACCTCACATAGTTACCATTTTTTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTT-AGCAAATTTCAAGTATA -CAATACAGTATTATTAACTATAGTCACCATGCTGTACA-TTAGATCTCCAGAACT-TATTCATCCTGCATAACTGAAAC TTTGTACCCTTTGACCAACATCTCCCCATTT------------------------------------------------- ----------------------------------------------------?? >Canis_familiaris AAAACAA--AATGAGTAATACCTCCACAAAGCACATTCACGCCACCAAAATACTTTCACTGAGAGAAACATCATTACAGA AATAGAAA---------TTTG--------TGTCCTTTTTTATTGAAATATATTTCACGTAC-ACCATGATGTAAATTTAA G--GTGGAAAACATGTTGATTCGAT-ACATCTGTAT-A---------AATTGTCAT-GTAGT-GATAG------AATTTC TA--ACATCACATAATTATCATGTCTTT-TCTGTGGTTGGAATAATTAAGATCTAGACTCTT-AGCAAGTTCGACCATTA -TAATATAACATTGTTGTCTATATTCAGAATATGGTGCT-GAAGATCTCTAGGACCTTAGGTATCT--ACTAACTGCAAG TTCACACCCTC-GAACAACAT-------------CC--AGGACACAGATTCTCCTC--------CGCACTCTACCTTTCT CA--T-------TCTGTCTCTCAAGCAGACACATTCTCCAATGTTTTTATTCCA >Felis_catus AAAACAA--AAAGAGTAATACCTCCACAAGGGAAATGCATTCCAGCAACATAATTTCACCAAAAGAAACTTCGTTGCAGA AATAAAAG------TTTGCTG--------TGTGTGTTTTTATTGAAATGTATTTCACATAT-AACATGATGTATATTTAA G--GTGTAAAACATGTTGATTTGATAACATTTATAT-ACTACAATGTGAT-------------GATAG------AACCTC TATCACATCACATAATTACCATTTCTCT-TTAGTGGTTGAAA-AATTAAGATCCAGATTCTT-AGGAAGCTTGATGATTA -TAATACAATACTGTTGTCTATATTCGCTATATTGTGCA-TAAGATCTCCAGGATC-TATATATCA--ACTAGTCGCAAG TTTACGCGCTT-GAACAGCAT-------------CC--AGAACACAGATACCCTT------------------------C TG--TTCTCTCTTCTGTCTTCCAAGAAGACACATTCTCCAATGCTTTTATTCCA >Manis_pentadactyla AAAACAA--AATGAGTAATAACTCCATAAAAGAAATACATTCCAGCAACATACTTT-ACCAAAAGAGACTTCACTGCAGA AATAGGAATAGAGATTCATTG--------TGT---TTTTTATTGAAATATATTGGACATAT-AACATGATATACATTTAA GATGTATACAACATGTTGATTTGAT-ACATTTTTAT-ATTATAATATGATTGCCATTGTAGT-GATGGTTGG--CACCTC TACTGAGTCACATAATTATCGTTTCTTT-TTTGTGGTGGTAATAATTCAGATCTAGACACTT-AACAAGTT----GATCA -GAACACAATATTGCTATCTCTTTTCGCTCTG-TGTGCA-TTACACTTCCAGGACC-TGTATGTCT--ACCAGTTACAAG TTTGCACCCTT-ACACAACAT-------------CC--AGGACAGAGATCCCCTTC--------TGCAGTTTGCCTTTCT CT--CTCTCTCTTCTGGATTTCAAGGGGACACATTCTCCAACATTTTCACCCCA >Equus_caballus AAAACAA--AACGAGTAATATCTCTACAAAGGAA--ACATTCCAGCAACATACTTTCACCAATAGAAACTTCATTGCAGA AACAGAAATAGAGATTTGTTT---CATTTTGT---TTTTTATTGAAATATATTTGACATAT------TGTGTAA---TAA G--GTATAAGACATGTTGATTTGAT-ACATTTATAT-ACTGTAATATGGTTGTCATTGTTGC-GATAG------CACCTC TATCATGTC--ATAATTCTCATTTCTTT-TTTGTACTTGGAATAATTAAGATCCAGACTCTT-AGCAAGTTTGATGATTA -TAATACAATATTGTTGCCTGTATTCACTACACTGTGCA-TTGTATTTCCAGGAGC-TATTTGTCT--ACTAGTTGCAAG TTTGTAC-CTT-AAACAACAT-------------AC--AGGATACAGAGTCCCTTC--------TCCAGTTTGCCTTTCT CG--TTCTCTCTTCTGTCCCTCAAGCAGATACATTCTCCAAGGTTTTTGTTCCA >Ceratotherium_simum AAACCCA--AATGAGTAATATCTCTACAAAGGCA--ACATTCCAGCAGCATACTTGCACCAAAAGAAACTTCGTTTCAGA AATAGAAACAGAGATTTGTTT--------TGT---TTTTCATTGAAATATATTTGACATGT----ATGATGTAAACTTAA G--GTGTAAAACATATTGATTTGAT-ACATTTATAT-GTTGTAATATGACTGCCATTGTAGT-GATAGTTAG--CATCTC TATCATGTCACATGACTATCATTTCTTT-TTTGTGGTTGGAATAATTAAGATCTAGACTCTT-AGCAAGTTTGATGATTA -TAATACAATAG----GTCTATATTCACTATACTGTGCA-TTGCATCTCCAGGAAC-TATTTGTCT--ACTAGTTGCAAG TTTGTAC-CTT-AAACAACAT-------------CTTTAAGA---AGATTCCCTTC--------TCCAGTTTGCCTTTCT CA--TTCTCTCTTCTGTCTTTCAGGCAGATACATTCTCCAGTGTTTTTGTTCCA >Myotis_myotis AAACCAA--AACAAATAATAGCTCTACAAAGGGAGTACCTCCCAGCAGCATCCTTTCACCAAAAGAAACTTCACTGCAGA AATAGAAATA-----TTGTCT---------GT---GTTTCATTTAA------------TGT-AACGTTGTGTAA-TTTAA C--AAGAAAAACATGTTGATTTGAT-ATGTTTATGT-ATTGTAATAAAATCGCTGTTGGAGC-TATAGTTGG--CACCCC TA-----TCACACAATTATCAGTTCTT--TTTGGGGTTGGACTACTTAAGATCTAGACTCTC-TGTGAGTTT---GACTA -CAGTGCAATATTTTTGTCTATGTTCACTAGACTGTGCA-CTAGCTCTCCAGGACC-TGTTTGTCT--CCTAGTTGTGAG TCTGTACACT---AAC--CAT-------------CC--AGGACACAGAGTCCCTT-----------------------CT CATTTTCCCTCCTTTTTTTTTTTGACAGACACATTCTCCAACATTTTTGTTCTG >Rousettus_aegyptiacus AAACCAA--AGCAAGCAATATCTCTACAAAGAGAACACATTCCAGTAACATACTTTCAACAAAAGAAATTTCATCGCAGA AACAGAAGTAGACGATTGTTC--------TGT---TTTCTA-TTAAATATATTTGACATAT-AACATTATGTAA-TTTAA G--GCATAAAACATGTTGATTTGAT-GCATTTATAT-GATATAAGAAGATTGCTGTAGCAGT-TGTAGTTAGCACACCTC TAGCATGACACAAAATTAATATTTTTTTGTGTGTGGTTGGAATAATTAAGATCCAGAGTCTT-AGTAAGTTTGATGACTA -CAATACAGTACCGTTGTCTATATTCACAATACTATGCA-TTAGATCTCTAGGACC-TATTTGTCT--ACTAGTTGCAGG TCTGTACCCT--AAACAACAT-------------TC--AGAACATGGATTCCCTTCTGAGTCCATGTGGTTTGCTTTTCT CACTTTTTCTCTTTCGTTTTTCAGACAGATACATTC-CTAACA-TTTTGTTCCA >Condylura_cristata TAGCCAA--CAGAAG----GTCTTTACAGAGGGAGTACATTTCAGTAACAC----TCACCAAAAGGAACTTCAGTGCA-- ----------------------------TTGT----TTTTATTG--GTTTTTTGGCCTCAT-AACACTATGTGCATTTAA ---GTGTAAAACATGGAGATTTGAT-ACACTTACAG-ATCACAATGTGATTAGCACTGA---------------CACACC TGTCATGCC-----ATTATCATTTCTTT-TTTGCTCTTGGAATAATTAAGATCTAGACTCTTGAGAAAGCTGGATGATTA -TCATTTGACAGTGTTGCCCATGTTCGCTCTACTATTCATTTAGGTTTCTAGGGCC-TACTTGTCC--ACTAAGTACAAG TTTGTACCCTT-AAACAATAT-------------CT--GGGAGACAGATTTCCTTCC-------TGCAGTTTGCCTTTCT CA------TTCTTCTGTCTCTCTAACCAATACATTCTCCAATGATTTTTTT-CA >Uropsilus_gracilis GAACCAAGCAAGGAC----ATCTCCACAGAGGGATCACATT-CAGCATCATACTTTCACCAAAAGGACCTTCCTTGTG-- ----------------------------TTGCTC--CTTTA--AAAATATATTTGTCCTCT-AACAATATGTAA--CTAA ---GTGTGAAACACGTAGATTTGAC-ACATTTAGATGATCACATTGTGATTGTCGTTGTAACAAATAGCTAG--CACTTG TAGCACATCGTGCCATTTTCATTTCTTT-TCTGCTCTTGGAA----TAAGATCTAGATTCTT-AGCAAGTTGGAAAAGTA TTAACATGTCAGTTTGGTCCATAGTCACTCTATGGTGCATTTAGATTTCTAGGACC-AATTTGTCC--ACTAGGTACAAG TATGGATCCTT--AACAATAT-------------CC--GGGAAACAGATTTCCTTCT-------TGCTGCTCGCCTTGCT CA------TCCTTCCATCTTTCAAGCAAGCACATTCTCCAG-GTTTCTGTTCCA >Sus_scrofa AAACCAA--AATAAGTCATATCACTACAAGGGGG-TACCTTCCAGAAATATACTTGCACCAAAAGAAACTTCTTTTCAGA AACAGAAATAGGGA--TGTTC----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------CC--AGGACTCAGGATGCCCT----------------------TCT CA--CTTTCTCTTC----TTTCAGGCAGACACACCCTCCCACATTTTTATTTCA >Bos_taurus AAACCAA--AATAAGGGATATCATGACAAGGGAGATAGATTCCTGAAACACAGTTTCACCAAAAAAAACTCTACTGCAGG AATGGAAATAGCGT--TGTTC----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------CC--AGAACGTGGATTCCCTTC--------TCCAGTTTACCTTTCT TG--CTTTCTCTTTTGTCTTTCAGGCAGACACATTCTCCAACATTTTTGTTTCA >Homo_sapiens AAACCAA--AATGAGTAATATCTCTGCAAAGAGTATACATTCCAGCACCACACTTTCACCAAAAGAAACTTTATTGCAGA AATAGGTCTAAAGA--TGTTT----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------CC--AGGACACAGATTCCCTTC--------TCTACACTGCCTTTCT CA--TTCTGTCTTCTGTCTTTGAAGGAGACATATTCTCCAAC-CTTTTGTTCCA Bat219_LINE >L1MA9_3END ----------------------------------------------------------------------------TAGA TCTTAAGTGTTCTCACCACACACAAAAAAATGGTAACTAT--GTGAGGTGATGGATATGTT------------------- ------------------------AATTAGC-TTGATT------------------------------------------ -------------------------------------------------------------------------------- ------------------------------GTGGTAATCATT---------TCACAATG-----TATACGTATATCAAAA CATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATA----AAGCTGG-----AAAAA-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------- >Canis_familiaris ACATTTTTTTCAGGATCTTCAATATATC--TTTTGATAGCAAAATT-ACAA--GTT---AAAAACTATTT---------- ----AAGAGATCTTATCACAGGAAAAAAAATTATAACTAT--GTATGGTGATAGATGT---------------------- ------------------------AACTAGA-CCTATT------------------------------------------ -------------------------------------------------------------------------------- ------------------------------ATGGTAATCATTT--------TTGCAATA-----TATACAAATACCAAAT CATTGTGTTGTAAACCTGAAACTAATGTAA-TGTTATAAGTCAATTATGCCTCAA------ATTCTTT-----AAAAAAT A------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -TTTCCC---TGCATCTTACATTATTGATAGTGTATACAT----TTTTTGCTTATTGCTCCAAT >Felis_catus ACA-TTTTTTCTGTATCTTCAATATATC--TTTCAGCAGCAAAATT-ACAA--GTT---AAATGTGAGTTCTT------- ----AAAAGATCTCATCACAAG-AAAAAAATTATAACTAT--GCATGGTGACAGATGCT--------------------- ------------------------AACTAGA-CCTATT------------------------------------------ -------------------------------------------------------------------------------- ------------------------------GTGGCAATTACTTTGCATGTATTGCA--A-----TATGCAAACATCAGAT CATTATGTCATACACCTGAAGCTAATATAA-TGTTATATTTCAATTATACCTCAATATTTTACTTTTTTT---AAATTTT CTTAATGTTCACTTATTTTTGAGAGAGAGACAGACAGACAGACTGCGAGTGAGGAGGAGCAGACAGAGAGAGGGAGACAC AGAGTCCGAAGCAGGATCCAGCTCTGAACTGTCAGCACAGAGCCCATTGCGGGACTTAAATTCACTAACCACAAGATCAT AACCTGAGCTGAAGTTGGACACCTAACCGACTGAGCCACTCAAGGTGCCCCATTTATAGCTCAATTTCTTTTAAAAAATG ATTTCCT---TGAATCTTATATTATTAGTAGTATTTAAAA----TTTTTGCTTGTTCCTCCAAT >Manis_pentadactyla ACA-TTCTTTAATTATCTTCA-TATATC--TTTCAATAGTAAAACT-GAAA--ATT---AAACATGATTTCTT------- ----CAAAGTTTTCATCAGAAGAAAAAAATTTGTAACTGC-GTTATGCTGGTGAATTTT--------------------- ------------------------AACTAGG-CTTATT------------------------------------------ -------------------------------------------------------------------------------- ------------------------------GTAATGATCATT---------TTGCAATA-----TACACAAAT------- -ATTATGTTGTACACCTGAAACTAATATAA-TGTTCTCTGTCAAGTGTACTT---------ATTTTTTT----AAATTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -TTTCTC---TGCATTTTATATTATCAATAGTATTTTGAT----TTTTTGCTTGGTACCCCAAT >Sus_scrofa ACA-TTCTTTCCTTGTCCTCCTGTCCTCAGTTTCAACAG-AAACTT-TCAA--GTT---GA---TGATGTCTT------- ----CAAATTTCTCATCGCAAGAAAAAAAAAT-TAACTGT--GTATGGTGATG----CT--------------------- ------------------------ACCTAGATTTTATG------------------------------------------ -------------------------------------------------------------------------------- ------------------------------GTGATAATCATT---------TTTC--TA-----TGCATAAATATTGAAT CATTATGTTATTAACCTGAAACTAACATAA-TGTTTTATGTCAATTGTACATCAATA----------------AAA---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---TCTC---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Bos_taurus ACA-TTCTT-CATTATCCTGA---------ATTCAACAG-GAAACT-ACAAATTTT---AAATATGATGTCTT------- ----AAAATTTCTCATCATAAG-AAAAACGTTATAACTGT--GTATGGTGACGGAGGCTTCCCTCGTGGCTCAGATGGTA CAGCTTCTGCCTGCAGTTCGAGAGACCTGGATTCAATCCCCGAGTCGAGAAGATCCCCTGGAGAAGGAAACGGCAACCCA CTCCAGTATTCTTGCCTGGAGAATAACCTGGTCGGAGGAGCCTGGTGGGCTACTGTCCATGGGGTTGCAAAGAATTGAAT GCGACTGAGTGACGTCATTCACTTTTCAGGGTGATAGATATTAAGC-----TTATAGTAATGATCGTATAAATACTGAAT CATTATGTTATATACCTAAAATGAATATAA-TGTTATATGTCAATGGTACCTCAATTAAA-------------AAAATGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -ATCCTC---TGAGTTTTAAATTACTAACA-TTTATATATATA-TTTTTGCTTTTGACTGCAAT >Myotis_myotis AGA-TCCTTTCCCCAGCTTCAATACACC--ACTCAACAAGAAAAAT-GCAC--TTT---AAACATGAGCTATT------- ----AAAAGTTCTCATCACA---ACAAAAATAATAACCATGGGTATGGTGATGGATAGT--------------------- ------------------------AACTAGA-TTTATT------------------------------------------ -------------------------------------------------------------------------------- ------------------------------GTGGTGATCTTT---------TTGCAATA-----TATACAAATATTAAAT CATTATGGTGTACACCTGAAATGAATATAG-TGTTATAGATCTGTTATATTTCAATT----------------ATTTT-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -TTTCTC---TGCATTTTATATTATTAGTAGTGTTTTAATAC--TTTTTGCTTGTTAAACCAGT >Rhinolophus_ferrumequinum GCA-GTCCTTCCTTAGCTTCAACGTATC--TTTCAACAGGAAAACT-GCAA--GTT---AAATA--CTT-CTT------- ----AAAAGTTCTTATCACAAGAAAAAA-----CAATTAT--GTGGAGTGATGGATTTTA-------------------- ------------------------AACTAGA-CTTATC------------------------------------------ -------------------------------------------------------------------------------- ------------------------------ATGGTGATCATT---------GTACAATA-----CATAGGAATATTGAAT CATTGTGTTGTACACCTGAAACTAGTATAA-TGTTAAATGTCAATTATACCTCAACT----------------AAAAAAA TGA----------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --TTTTC---TGCATTTTATAGTATGAATAATATTTAAAAAT--TTTTTGCTTGCTACCCCGAT >Equus_caballus ACA-TTCTTTCATTATCCTCAGTATATT--TTTCAACATTAAAACT-GCAA---AT------CATGATTTCTC------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------TGCATTTTACATTATTAACAGTATA---------TTTTTTCTTGTTA---CAAT >Ceratotherium_simum ACA-TTCTTTCATTATCTTCAATATATC--TTTCAACATTAAAACT-GCAA--GTT---GATCCTGATTTCTC------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------TGCCTTTTATATTATTAATAGAATTTTAATATT-TTTTCGCTTGTTACCCCAAA >Condylura_cristata ATG-TTGTTTCATCACCTCCAATATATC--ATACAATAGGATAATAAAAAA--GTT---AAACA--ATTTCTA------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------TTCATTTTATATTAATAGTA--------------TTTTACTTTGTTACCCCAAT >Solenodon_paradoxus ATA-TTCTTTCATTATCTTCAATATGTC--TTTCAGCAGGAAAAC-AGCAA--GCA---AAACATAATTCCTC------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------TGTGTTTTATACTAATAATATTCTTGTA------TTTTTGCTTATTACCACCAT >Cavia_porcellus ATA-TTCATTTATAATATTCAATATAGC--TTTCAAGATGAGTACTAGAAA---TT---AAACATGCTTTCTC------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------TGTATTTGATACAGTTAAAATTACTTTAATTTTCTTTTTGCTTCTTTCAACAAT Bat235_LINE >L1MA9_3END --------------------------------------------------------------------------TTTTTC CAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTAT-ATATTTAAGGTGTACA-ACGTGATGTTTTGATATACGTAT ACATTGTGAAATGATTACCACAA-TCAAGCTAATTAACATATCC-ATCACC----------------------------- ---------------TCACATAGTTACCATTTTTTT------GTGTGTGGTGAGAACA---------------------- --------------------------------------------------------------- >Canis_familiaris GGAATACTCTCCATGCTTATGATGGAATATAAGAAGGAAAT--ACCAAAACA-----TTATTTTCCTTTCT--------T TTTTTTAATTAAAATATAACAGACATAG-AACACTGTGGAAAGTTTAAGATATACA-ATGTGTTGATTTGGTACACTTAT ATATTACAAAATGATTACTATAG-TAGTGTTAGCTAAAACCTTT-ATCATG--------GGGCTGGGGAATTAGGGAGAT GTTT------------------------ACTA--GTAG----ATAAATTCTGGAG------TTCTTTTTTCCTGTCT--- AATCCTTCCAAGG------AGTTCCTGATAC--AATGTGCCTTGGATAATTTAAAACTGTAAC >Felis_catus AGAATAGTCTCCATGCTTACGGTGGAATATAAGGAAGAAAC---ACAAAACA-----TTCTCTTCCCTTCT--------- -----AAATTAAGATAT------------AACACTGTGG-AAGTGTAAGGTGTACA-ATGTGTTGATTTGATACAC--AT ATATTACAAAATGATTACTACAG-TAGTGTTAGCTAACACCTTTAATCATG--------GGGCAGGGGAATTGGGGAGAT GTTG------------------------TTTACTTTAG----ATAAATTCTGGAG------TTC---TTTCCTGTCT--- AATCCTTCCAAGG------AATGCCTGATAC--AGTGTATCCTGGATAATTTAAAACTGCAAC >Manis_pentadactyla GGACTAGTATCTGTGCTTATGGTTGTAT-TAAGGCACAAAT--AACAAA-AA-----TTCTTCTTCTT-TT--------- -----AAATCAAGATATAACTGACATGT-AACTTTGTGT-AAGTTTAAGATGTACATATGTGTTGGTCTGATGTATTTAT ATATCCCAAGATGATTACTACCGTTACTGTTAGCTACCACCTTT-ATCAGG--------AACTGGGGAAATTGGGAAGAT GTTAAGG--------GTACAAACTTAAAACTA--GTAGGAA-AAAAGTTGTGGAG------CTCTCCTTACCTTTCT--- AATCATTCCAGCAG-----AGCACCTGATAT--AGTACGCCTTGGATAAGAAAATACTGCAAC >Sus_scrofa GGAATAGGTTCTGTGCTTACAGTTGAACACAAGGCAGAAAT--GCCGAAAGA-----CTCTTTTCCTTTTC--------- --TTTAAATTGAGATGGAACTGCCACAC-GAGACTGT---AAGTGTAAGGTGGACG-GCGTGTTGATG------ATTTAT ATACGGCCGGCTGATGGCTACAG-CAGGGCTAGTTAACACCTCT-ACTGCAGGCGGGCCGGGGGGGGGAGTTAGGGAGAT GCTGTTAAAAG----GTACAAACTCGCATCTG--GCGGAAAAATAGGTTGTGAAG------TTCTCTTTTCCTTTCT--- AATCCTTCCAAAG------AGTCCCTGGTACTGAGCACGCCTTAGAGAACTGAAAGCTGCAAC >Vicugna_pacos GGAATAGTCTCCATACTTATGGTTGAATATAAATATTCTCTATACCAAAACA-----TTCTTTTCCTTTCT--------T TTTTTTAATTGTGATGTAATTGACATAT-AGCATCATGT-AAGTTTAAGGCAGACA-GCGTGTTGATCTGATACATTTAG ATATTGCAGTGTGATCACTACAG-TAAGGCTAGCTAGTACCTCT-ATCCTG--------GGGTGGGAGAACCAGAAAGAT ATTAAACA-------GTACAAAGTTGCAACTA--CGAGATA-GTAAGTTCTGAAG------TTCT--TTCCCTTTCT--- GATCCTTCCAAAG------AGTACCTGATATAGAGTATGCCTTGGATAATTAAAAACTGCATC >Myotis_myotis GAA--AGTCTCCATGCTTATGGTTGAATATAAGGCAGAAAT--ACCAAAACA-----TCCTTTTCCTTTTT--------- ---TGAAATCGAAATTT----GACATAT-AACAT-------AGTTGAAGGTGTACA-ATGTGCTGGTTTGATACACTCAT ATGTTGCAATATGATTGCTAAGG-TAGAGCTAACTA----CTCT-ATCAGG--------AG--TGGGAAATTGGAAATTC GTTGTGTATGGGTCCATACAAACTTACAGCCA--GTAGGTAAATAAGTTCTGGAG------TTCTCTTT--CATTCT--- AATCCTTCCAAAG------ACTACCTGATATAGAGT---------ATAATTAACAACTGCAAC >Rousettus_aegyptiacus AGAATAGCCTCCATGGTTATGACTGACTGTAA--CGGAAAT--ACCAAAACA---TTATTTTTTTCCTTTT--------- ----TTAATTGAAATATAATTGACATAC-GACATTAGGT-AAATTTAAGGAGTACA-ATGTGTTGGTCAGACACACTTAC ACACTGTAATGTAACTGCTACAG-TAGAGCTGGC----ACCTTT-ACCATA--------GGGTGGAGGAATTGGGGAGAT GCTATTTAAGG----GTACCAACTTGCCACTA--GTAGATAAACAAGGGCTGGAG------TTCTCTTTTCCT-TCT--- AGTCCTTCCAAAG------ACTACCTGATATAAAGTATACCTTA-ATAATTAAAAACTACAAC >Equus_caballus GGAATAGTCTTTGTGCTTATGGTTGAAT-CAAGGCAGAAAT--ACCAAAACA---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------TC---TTTGCCTTCCT--- ATTCCTTCCCAAA--------------AGGTACAGTA---CTTGGCTAATTAAAAACTGCAAC >Ceratotherium_simum GGAATAGTCTCTGTGTTTATGGTTGAATATAAGGCAGAAAT--ACCAAAACA---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------TCTTCTTTTTCTTTCT--- AATCCTTCCCAAAAGGTACAGTACTTGATATACAGCACGCCTTGGATAATTAAAAACCGCAAC >Condylura_cristata GGA--AGTCTCCCTGTTTACAGTGGAATATAAGGCAGCAAT--TCC---ACA---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------CTTTCTTTCCCTTTCT--- CATCCTTCCAGAT------AGTGTTTGATACAGAGTTGGCCTTGGAT------------CATC >Scalopus_aquaticus GAA--AG----AGTGTTTACAGCTAAATAGAAGGCAGCAAT--GGCACAATC---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------TTTTCTTTTCCTTTCT--- CATCCCTCCA----------------GATATAGAGTAGGCCTCGGAT------------AATT >Homo_sapiens GGA-TAGTCCCTGTGCTTATGGCTGAATATCGGATAAAAATA-ACCAAGATA---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------TTCTCTTTTCCTTTCT--- AATCCTTCCACAA------AGTACCTGATTTACAGTATGCCTTGGGTAACTGAAAACTGCAAC Bat240_LINE >L1MA9_3END ----------------------------------------------------------------------GATCTTAAGT GTTCTCACCACA-------CACAAAAAAA---TGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTA ATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATAC CTCAATAAAGCTGGAAAAA------------------------------------------------------------- ---------------- >Sus_scrofa ATAATTTTAAGCACCAATTATATGCA-AGAGTAAGGTTACCTCTGTT---AAAAGTAACATTGACAG------------- ---CTCATCACATCATACACACATAAAAGATTGTGTAATTATGTTTGATGATGG--ATGTTAACTATACTTACTGTGATG GTCATTTTGCAATATATATAAATATTGTATCATTATGCTATATACCTGAAACTAATATAA-GATTATATGTCAATTATAT GTCAGTA----TGAAAAAAAA---AGAGGTAACCTTGGCAG---AGTGC-AAAATGCTGCATAGAGGCCCTCAGACCACT CCTGAGGAC-TTTGGA >Bos_taurus ATAATTTTAAGCACATACTATGGGCCAAAGGTAAAATTATGTCTGTT---AAGTATAACGTTGACAA------------- ---TTCATCACA---TGGCAAGGAAAAAATTTTTGTAGCTAT------TAAT----ATGTT--------------TGGTG GTCATTTTGTAATATATGCAAATAGTGAATCAT--------------------GTTATAA-CGTTCTTTGTCAATTTTAT CTCAATA---CAACAACAACA---AAA-GTA-TCT-GAGAG---AGTGA-AAAATACTACAAAGAAGCCCTTGGATCACT CCTGAGTTC-TTTGGA >Equus_caballus CTAATTTTAAGCACCGACTAAGTGCC-AGGGTAGGGTTACATCCATT---AGAAGTAATCTTGGCAG------------- ---CTCATCACA------AGAAAAAAATAAATTTGTAACTAAGTGTGGTGAGGG--ATGTTAACTACACTTACTGTGGTG ATCATTTTGCAGTATATACAAATACTGAGTCATTATGTTTTAC-CCTGAAAC---TATAA-TGTTATATGTTAATTATAT CTCAAT-----TTAAAAAAAA---AGAAGTAATCTTGGCAG---AGTGA-AAAACGCTGCACAGAGGCCCTTGGACCCCA CCTAAGGACCTTTGGA >Ceratotherium_simum CTAATTTTAAGCACCTACTATGTGCC-AGGATAGGGTTACATCCGTT---AGAAGTAACCTTGGCAG------------- ---CTTATCACA----AGAAAAAAAAGAAATTTGTTAACTATGTATGGTGATGG--ATGTTAGCTACACTTATTGTGGTG ATCATTTCCCAATATATACAAATACTACATCGTTATGTTTTATGCCTGAAACTAATATAG-TGTTATATGTTAATTATAT CTCAAT-----TAAAAAAAAA---AGG---AACCTTGGCAG---AGTGA-AAAATGCTGCACAGAGGCCCTTGGACCACT CCTAAGGACCTTTGGA >Myotis_myotis ATAATATTAAACAGCTCCCATATGTC-AGGGTAGGGTTACATCCATT---AGAAGTAAACTTGGCAG------------- ---CCTATCATA----AGAAAAAAAAAAAATC---TAACCATGTATGGTGATGG--ATGCTAACTACACTTATTTTGGTG GTCATTTTTCAGTATGTACAAATATTGGATCATTATGTT-TATACCTGAAATTAATATAA-TGTTATATGCCAATTATGT ATCAAT-----TATA---------AAAGGCAACCTTGACAG---AG--A-AAATTGCTGCACAGAAGCCCTTGGATCTCT CCTAAGGACCTTTGGG >Rousettus_aegyptiacus ATAATTTTAAGCAGCTACAATATGCC-AGGGTAGGGTTACATCCATT---AGAAGTAACCTCGACAG------------- ---CTCATTACA----AGAAAGAAAAAAA------CAAC-ATATATGGTGATGG--ATGTTAACCACCTTTATTGTGGAG ATCATTTTGCAATATATACAAATATTGAATCATTATGTTGTACACCTATAGCTAACATAA-TTTTATATGTCAATTGTAC CTTAAT-----TGGAAAAAA----AGAAGTAACTTTGGCAG---AGTGA-AAAATGCTGCACAGAAGCCCTCAGACAACG CCTAAGGAC-TT-GAA >Canis_familiaris ACAATTTTAAGCACCAGCTGTGTGAC-AGGTTGGGGTTATATCTGTT---GGAAATAACCATGGCTA------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------AGTGA-AAAATACTGCACAGAGG------------- -------ACTTTCAGA >Felis_catus AT--TTTTAGGCACCTACTATGTGAC-AGGGTAGGGTTATATCTGTT---AGAAATAACCTTGGCAC------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------AGTGA-AAAATACTGGACAGAGGCCCTTGGACCACT CCTCAGGACCTTTGGA >Manis_pentadactyla ATAATTTT-AGCACCTATTATGTGCC-AGGGTAGGGTTACATCTCTT---ACATGGAACCTTGATAG------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------AGTGAAAAAATTCTGCACAGAGG-CCTTGGACCACT CCTGAGGACCTTC--A >Condylura_cristata ATGA-GTTGAGCACCTACTATGTGCC-AGTGTAGGGTTACAT-TGTT---AAAAATAATCCT-ACTA------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------AGTGG-AAAATGCTGCATAGAGATCCTGGGACCA-G CCTAACGGTCTTTGGA >Sorex_araneus ATGATTG--------------------AGGGTAGGATGACATTTATT---AGAGAAGATCTTGGCTG------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------AGAGG-AA---GCTGTATAGAGACCATTAGATCACT CCTAAGGACCTTGAGA >Homo_sapiens ATGATTGTAAGCATCTATTATGTGCC-AGGGTAGGGTTATATCCATT---GTAAGTAACCTTGGCAG------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------AGTAA-AAAATGCTGCACAGAGGCCTGTGGACCACT CCTAAGGACCTTTGGA Bat241_LINE >L1MA9_3END -------------------------------------------------------------------------------- ---------------------------------------TTTTTCCAGCTTT----------ATTGAGGTATAATTGACA AATAAAAATTGTATATATTTAA----GGTGTACAACGTGATGTTTTGATATACGTATACATTGTGAAATGATTACCACA- ----------ATCAAGCTAATTAACATATCCATCACCTCACATAGTTACCATTTTTTTGTG------------------- -------------------------------------------- >Canis_familiaris CTTGGGACATGG-----CTTCCC-ACAGAGCAAGTGGTT--TGAGGG----CCAGAAGCCAC---ACTC----------T TC---ATTTTTTGC----------------CTTTAAAAAAAAATTTATTTTTTTA-------ATAGAAATATATTTGACA T---AAAATTGTGTAAATTTAA----GGTATA---CGTGTTGATTTGGTTCATCGATATATTGTA--ATGATTACCATT- ----------GTAGACACGATTTGCACCTTTATCAGGTC-CATACTG-CCTTCT----------ATCCCCT---CATCTC AGAAGTGACATACCACCGCTTTTGCCATATACTGTTGGTTACAC >Felis_catus CTCGTGACATGG-----CTTTCCCCCAGAACAAGTGGTC--TGAGAGG----CAGAAGCCAC---ACTC----------T TT---TTTG---------------------TTTTTAAATTTTATCTATTTTTT---------ATTGAAATATATTTGACA TAT-AACATTGCGTAAAGTTAAGTAAGGTATACACCATGTTGATTTGACTCATT-------------------------- --------------------------------------------------------------------------TGTATC AGAAGTGACATACCATCACTTCTGCCATATTCTGTTGGCTACAC >Manis_pentadactyla CTCATGACATGGCTTCCCTTCCC-CTAGAGCAAGTGATC--TG-GAAAGAGCCAGAAGGCAC---ACTG----------C CG---TTTTTTTTTGTGTGTGTGTGTGCCTTTTAAAAATCTTAGTTGTTTTT----------ATTG--ATCTGTTTGTTT TAT-AACATTGTGTAAATTTAA----GATATATGACATGTTGTTTTGATACATT---ATGTTGTA--ACAGTTCTCATTA CTGTAATACAGTAGTGTTTATTAGCACCTCTATCACATC-CATGCTG-CCTTTT----------AAAACCT---CATCTC AGAAGTGACATACCAACAGTTTTGCCATATTTTGTTGGTTACAC >Sus_scrofa TGTATGACATGG-----CTGGTCCCTGAAGTAGGTGATC--CAAGAGAAA--CAAAGGCCAT---ACTG----------C CT----------------------------TTGTTTGCCTTAAGCGATTTTCATT-------ATAGAACTACATTTGACA TAT-AATGTTGTGTAACTTTAG----GGTATATAATATGTTGATTTGATAGATTTATAAATTGTAGTATGATTCCCATT- ----------GTAGCAATGATTAGCTCTTCTATTGTGTC-CACACTT-CTTTTT----------ATAAC-----TACCTC AGAAGCAACAGTATGTCATTTTGGTTGTATTCTGTTTGTTACAC >Bos_taurus CTCATAACATGG-----CTTCTCGCCAAAGCAAGTGATC--TGGAAGAAAGCCAGAAGTCAA---ACTC----------C CT---TTTTTTTCCC---------------TTTAAAAAATTTATGTATT-------------ATTGAAATATATTTGACA TAA-AACATTGTGTAACTTTAA----GGTATATAACAC--TGATTTGATACATC----AGGTGTAATAAGATTGCCATT- ----------GTAGTGATAATTAGCACTTCTGTCACGTC-CACC----CTTTTT----------ATAACCT---AAACTC A-----GATTTACTGTTACTTTTACTGTGTTCTCT--GTTACAC >Equus_caballus CTCATGACATGG-----CTTCCC-CCAGAGCAAGTGATC--TGAGGGAG--CCAGAAGCCAG---ACTG----------C CT----------------------------TTTGAAAAATTTATCTATTTGTTTT-----TTATTGAAATGTATTTGACA TAT-AACCTTGTGTAAGTTTAAG---GTTATACAACATGTCAACTTGATATATTTATATATAGTAATATGATTGCCATT- ----------GTAGTGATAATTAGCACCTCTATCACGCC-CACA-TG-CCTTTT----------GTAATCT---AATCTC AGAAGTGCCATACCGTCACTTTTGCCGCATTCTGTTGATTACAC >Ceratotherium_simum CCCATGCCATGG-----CTTCCC-CCAGAGCAAGTGATC--TGAGAGACAGCCAGAAGCCAC---ACTG----------C CT----------------------------TTTTAAAAATTTATCTATTTATTTT-----TTATTGAAATATATTTGACA TAT-AATATTGTGTAAATTTAAT---TGTGTAAATTTATACAACTTGATACATTTATGTATTGTAATATGATTGCCATT- ----------GTAGTGATAATTAGCACCTCTGTCACGTC-CACATTG-CCTTTT----------ATAATCT---AATCTC AGAAGTGACATACCATCGCTTTTGCCATATTCTGTTGGTTTCAC >Myotis_myotis CTCATGACATGG-----TTTCCC-CCAGAGCGAGTGATC--TGAGAGA----CAGAAGCCAC---ACTG----------C CT----------------------------TTTAAAAAATTTATCTACTTATTTAATTTTTGATTGTAATATGCTTGACA TA------TTGTATAAATTTAA----AGTGTACAACATATTGATTTGATACATCTATACATTGTAATATGATTGCCATT- ----------GCAGTGATAA-TAGCACCTCTATC---TC-CACA-----CTTTT----------ATAACCT---AACCGC AGAAGTGACATACCGTCACTATTTCCATATTCTGTTGGTTACAT >Rousettus_aegyptiacus CTCATGGCATGA-----CTTTTC-CCAGAGCGAGTGATC--TGAGAGAGATCCAGAAGCTGC---ACTG----------C CT----------------------------TTTAAAATATATATTTTATTTTTAA-------ATTGTAATATATTTGACA T---AATGTTGTACTTATTTAA----GGTATACTACATGTTGAATTGATATATCTATGTATT-----ATGATTGCCACT- ----------GTAGTGATAATTAGCACCTCTATCAAGTC-CACACTG-CCTTTT----------ATAACCT---AATCTC AGAAGTGACATTTTGTCACCTTTCCCATATTCTGTTGGTCACAC >Condylura_cristata CACATGATACAG-----CTTCCC-CCAGAG---GTGGGA--ACAGAGAGAGTCAGAAGCTG----ATAA----------C TT------------------------------------------------------------------------------ -------------------------------------------------------------------------------- --------------------------------------------------------------------------CATCTC AGAAGTTTCTTACTA----TTTTGCCACATTCTGTTGGTCACAC >Solenodon_paradoxus CTCATGACATGG-----CTTTCC-CCAGAGGAAATGATC--AGAGAG----CCAGAAGC-AC---ACTGCCTTTTATAAC CT------------------------------------------------------------------------------ -------------------------------------------------------------------------------- --------------------------------------------------------------------------AATCTC AGACGTGACATACCATCACTTCTGCTATATCCTGTTGATGACAC >Homo_sapiens CTCATGGCATGG-----CTTCCC-CCAAAGCAATTGGTTAGAGAGAGAGAGCCCGAAGCCAC---AGTG----------C CT------------------------------------------------------------------------------ -------------------------------------------------------------------------------- --------------------------------------------------------------------------AATCTC AGAAGTGACAAATCATC-----------------------ACAC Bat250_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------TGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTC ACAATGTATACGTATATCAAAACATC--ACGTTGTACACCTTAAAT-ATATACAATTTTTATTTG--TCAATTATACCTC AATAAAGCTGGAAAAA---------------------------------------------------------------- ---------------------------- >Canis_familiaris TCAGGAGGGATATCTCAGATATGACACCTAATCTGAG-TTCGAGAGACAATC---AGAAGCTACCTGA---TGGGG-TGT AATGTACAGCACAATGAATACAGTTAACGAGACCATGTATTGTATATTTGAAAGTTGCTAAGGGAGTAGGTCTTAAAAAT TC---TCGCAAG-AAAATAAAT--TGGTAACTAGTTGAAGTGATATA--TTTTAACTAAATGAATTATGATGATCATTTC CCAATCTACACATACATCAAATCATTGCGTGTTGTATACCCTAAAAGTTGTGCAAT-GTTGTATGACTCACTTATATCTC AATAAAACTGGAAAAAAAGGA-ATATAGGGGGG------AAAA-GATACCTGA---GGAAAAAAGCT-TCACTGAAGGAA AAGAAAGAGCAAGTGAGAGAAAGCTTGA >Felis_catus TCA-GAGAGATTTCTCAGATATGAGACCTAAGTTGGCACTCGAGAGACAACG---AGACCTTACTTGA---TGGGGCTTT GACATACAGCGTGATGACTGCAGTTAACAACACAGTATACTGTAGACTTGAAACTTGCTTTGTGAGTAGATCTTAACA-T TCTCCTCACAGG-AAAAGAAAT--TGGCAACTATTTGAGGTGGTATC--TTTTAACTAAATGTATTATGGCGATCATTTT ACCATCTGTATATATCTGAGACCATT--ATATTGTACACCTTAAAG-TTATGCAGT-GTTATAGGGGCCAATTATACCTC AATAAAACCGGGGGAAAAAAGAATATGGGGGG-------AAAA-GTTATCTGA---AGGAAAAGGGTGTCAATG--GCAG AAGAAGGAGCAGGTGCAGGAAGGCCAGA >Manis_pentadactyla TCAGGAGGGATTTCTCAGATAGGAGACCTAATCAGAGACTTGAGAGACCATT---AGG-TGTGTCTGA---TGGGGATAC AGTGTATGTCGTGATGATCATAGTTAGCAACAC--CATATTGTATATTTCAAAGTTGCTAAGGGAATAAATCTTAAAAGT TCGTATGGTAAG-AAAAAATAT--TTGTAGCTATGCGAGGTGATGGA--TGTTAACTAAGTGTATTATGATAATTATTTT ATAATATACACTTATAGCAAGTCATT--ATGTTGTACACTTTAAAC-TTATATAAT-GTTATGAG--TCAA-TATATCTC AATAAAACTGGAAAAAAAGAAGACAGAAAAAAGAA----AGAA-GTTATCTGA---AGGAAGAGG----TATTA--ACAG AAGAAAGAGCAAGTGAGGAAAGGCTTGC >Sus_scrofa TCAGGAGGGATTTCTCAGCTATGAAACCCAAGCTGAGACTCGAGAGACAATT---GGAGGTTTTCTGA---TGGGGATGG AACATACAGCAGGATAACCACAGTCATCAGCAC--TGTGTTGTGTGTTTGAAAGTTGCTAGGGGACTAGGTCTTAAAC-T TCTCATCACAAGAAAGAAAAATGCGTGTAACTCTGTGAGGTGATGGA--TGGTAACTAAAC--ATTGTGGCAATCATTTC ACAATATATA--TTTACCAAATCCCT--ATGTTGTACAACTCAAGC--------AT-GCCTTATG--TTGATTATGTCTC CATAAAACTGGGGGAAATGC---CACAGGAAA-------AAAC-GTTTTCTGA---AGGAGAAGGTTATCACCG--GCAG AAGAGAAAGCGCGTGAGAGACGGCTGGG >Tursiops_truncatus TCAGGAAGGATTTCTCAGAT--GAGACCCAAGCTGGGACTTGAGAGACAATT---AGAAGTTATCTGA---TGGGGATGG AATATGCAACATGATAACTGTAGTCATCAACAC--TGTATTGTGTATTTGAAAGTTGCTAAGAGAATAGATTTTAAAAGT TCTCTTCGCAAG-AAAAAAAAT--GTGTAACTATGTGAGGTAATGGA--TGATAACTAAACATATTGTGGCAATCATTTC -CAATATATACGTTTATCAAATCATT--ATGTTGTATACCTTAAAC-GTATGCA------AAATG--TCAATTATATCTC AATAAAACTGGAAAAAAATA---AAGGGAAAGAAA----AGAA-GCTATCCGA---AGGAAAAGGGTGTCACAG--GCAG AAGAGAGAACAAGTGAGAGACGGCTTGG >Equus_caballus T-AGGAAGGATTTCTTAGATGTGAGACCTAAGCTAACACTTGAGAGACAATC---AAAAGTTATCTGA---TGGGGATGT AATGTACAGCATGGTGACTATAGTGCACAACAC--TGTATTGGATA--------TTGCTAAGGGCATCGATCTAAAAAGT CCACCTCAAAAG-AAAACAAAC--TTGTAACTATGTGAGGTGATAGA--TGTTAACTAAAGGTATTATGGTAATCATTTC ACAACATATACAAAAATGACATCATT--ATGTTGTACACTTTAAAC-TTACACAAT-GTTATAGG--TTGTTTATATCTC ATTAAAACTGGAAAATGAA----TACAGAGAAAAA----AGAA-CTCATCTGA---AGGAAAGGGATGTCATTG--GCGG AAGAGAGAGCAAGTGAGAGGAGACTTGG >Ceratotherium_simum TCAGGAGGGATTTCTTAGATATGAGACCTAAGCTGGGACTGGAAAGACAATC---ACAAGTTATCTGA---TGGGTGTGT AATGTACAGTGTGATGACTATAGTTCACAAAAC--AGTGTTGGATA--------TTGCTAAGGGAGTTGATCTTAAAAGT TCTCATCACAAGAAAAAAAAAA--TTGTAACTATGTGAGATGGTAAA--TGTTAACTAAATGTATTATGGTAATCATTTC ACAATATATACATATATTACATCATT--ATTTTGTACACTTTAAAC-TTACAC-------ATATG--TTGATTATATCCC AATAAAACTGGAA----------TACAGAAAAAGAA---AGAA-ATTATCTGA---AGGAAAGGGGTGTCATTG--GCAG AAAAGAGAGCAAGTAAGATAAGACTTGG >Myotis_myotis TT-GGGGGGATTTCACAGATAGGAGATCTAAGTGGGGACTTGAGAGATAATT---AGAAGTTTTCTGA---TAAGGATAT AATACAC----TTATGACTATAGTTAATAC-----TGGCTTACATATTTGAACATGGCAAGGAGAATAGATCTTAAAA-T TCTCATCACAAG-AAGAGAAATATATGTAACTATGTGAGTTGAT------------------------------------ ----------------------------------------------------------TTATATG--TCAATTATATTTC AATAAAACTGGAAAAATAAGA-ATACAG--AAAAA----ATAA-GTTATCTGA---AGGAAAAGGGTGTCACTG--GCCA AAGAGAGAGCAAGTGCGAGAAGGCTTGG >Rhinolophus_ferrumequinum GCAGGAGGGATTTCTCAGATA-GAGACCTAAACTGGGACTTGAGAGACAATT---AGAGGTTATCTGA---CGAGGATGT AATATACAGCATGAGGACTATAGTTAATGGCAC--TGTACTGGATGCTTGATAGTTGCTAAG-GAGTAGATCTTAAAAGT TCTCATCACAAG-AAACAATGG--TTGTCGCTACATGGGGTGATGGA--TCTTAACTGATCATACTGTGTTAATCATTTT GCAGTATATACACTTATGAAATC-----ATGTTATAGACTTTAAAC-TTGTACGAT-GTTATATG--TTAGCTATATCTC AATAAAACTAGAAAAAGTAAGCATACGGGAAA-------AGAA-GTTACTTAA---AGGAAAAGGGTATCACTG--GCGG AAGAGAGAGCAGGTGAGAGAAGGCTTAA >Condylura_cristata TCGGGACAGATTTGTCAGCTATGAGACCTAAGCTTGGACTTGAGAGACAATT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------AGAA--TTTGTTGA---AGTAAGTGAGTGTCACTG--GCAA AAAGAATA----ATGAGAGCAAGCTTGG >Uropsilus_gracilis TCAAGACAGGTTTCTCAGATATGAGATCTAAACTTAGACTTGAGAAACAATT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------AGAA--ATTATTAA---AGGAATTGGGTGTTGCCA--GCAG AAGGAGAA----AAGAGAGAAATTTTGG >Homo_sapiens TCAGGACAGATTTCTTGGATTTGAGATATGAGCTAGGACTTGAGAGACAATT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------AGAAAGTTATCTGG---AGGAAAAGGCTGTTACTG--GCGG AAGAAAGGGCAAATGAGA--AGGCTTGC Dog1_LINE >L1MA9_3END -------------------------------------------------------------------------------- --AAATGGGGAGATGTTGGTCAAAGGGTACAAAGTTT---CAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGTAC AGCATGGTGACTATAGTTAATAATACTGTATTG----------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------TATACTTGAAATTTGC TAAGAGAGTAGATCTTAAGT-GTTCTCACCACACACAAAAAAATG-GTAACTATGTGAGGTGATGGATATGTTAATTAGC TTGATTGTGGTAATCATTTCACAATGTA---TACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTT ATTTGTCAATTATA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------CCTCAATAAAGCTGGAAAAA---------------------------------------------------- -------------------------------------------------------------------------------- ---------------------- >Canis_familiaris TTACTTAAGAATGGAAACTACCTCCTCTAATTTAATGTAAACATATACTT----ATAG-------ATG-TTTATTACTG- -----------GAGGTTTATACCTTTTGACCACATTTACCCAGTTAT--AAAATAGAT--GTCTTAGGGATGTAATGTAT AGCATGGTGACTATCATTAATAATACTGTGTTG----------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------TGTATTTCAAAGTTCC TGAG--AGTAGATCTTAAAA-GTTCTCATCACA---AAGAACATTTGCAACTGTGT--GATGATGG--ATGCTAACTAGA CTTATTGTGATGATGA-TTCACAGCGTA---CACAAATACCAAATCCTTATGTCGTACACCTGTAACTAATATTATGCTC -TATGCCGATAATA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------TCTCAAAATTTTTAAA-------GAAGGTATTTATTACTG---TTATAGT-TA---ATTTTTGTGTGTGTGT G----------------------------------TGTGTGTGTATAAATGTGATGTA---------------------- -------------TGTTTTCCA >Felis_catus TTACTTAAGAATGGTAACCACCTCCTCTAATTTAATGTAAACACTTACTT----ATAG-------ATA-TTTATTACCG- -----------GAGGTTTGTACCTTTTGACTGTCTTCACCCAGTTAT--AAAATAAAT--GTCATGGGGTTGTAATGTAC AGCATGGTGACTGTAGTTAATGATACCGTATTGTAGGGGCTCTTGGGTGGTTCAGTTGGTTAAGCGTCTGACTCTTGATT TTGGCTCAGGTCATGATTTCATGGTTCAGTTCATGAGTTGGAGACCTGCATCGGGGATTCTCTCTTTCCCTCTCTCACTA CCCCTCCTCCCCTCTCTAAATAAACTTAAAACAAAACAAAACAAAACAAAAAAACCCACTGCATTGTATTTCAAAGTTCC TGAG--AGTAGGTCTTAAAA-CTTCTCATCACAAGAAAGAACATTTGTAACTGTG-GGGGTGGTGA--ATGCTAACTAGA CCTATGGTGGTGAT-------CAGTATA---CACAAATATGCAATCATTATGTGCTATACCTGTAGCTAATATAATGTTC -AATGTCAATAATA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------TCTCAATTTTTTTAAA-------GAAGCTGTTTATTACTG---TTTTAGT-TATATATATATATATGTATAT ACAGATATATATACCTGTATTATATGTAATATATTTTTTATATTATATATATAATATAATACACATATTATATATATATA AAATAAATGTGACTTTTTTTTA >Manis_pentadactyla TTCTTTAAGAAGGGAAATCACCTGCACTAAGGTAATGTAAATAATTCAAT---TATAA-------ATGTTTTATTACTG- -----------AAAGTTTGTACCATTTGACCACCTTCATCCAGGTGT--AAAATAAATAAGTCATGGGATTGTAGCATAC AGCATGGCGACTGTAGTCAATAATACTGTATTG----------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------TTTATTTGAAAGTTGC TACAAAAATAGATCTTAGAC-ATTCTCATCACAAGAAAAAAAAT--GTAACT-------GTGGTGA--ATGCTAACAAGA CCTGTTGTGGGGACCATTTTGCAATAGACACCACAAATATTGGATCATTATGTTGTAC------AACTAATATAGTGTTA -CATGTCAATTATA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------TCTCAT--TTTTT----------AGAGGTATTTATTAGCA---TTTTAGT--ACAAATAATAATAA------ -----------------------------------TTATTTTTTGTAAATATGGTATA---------------------- -------------TGGATTTTG >Sus_scrofa TTACTTAAGAATGAAACTCACCACCACTAGTTTAATGTAAACATTTGCTT----ATGG-------TTG-CTTACTACTG- -----------CAAGTTTGAATCTTTTGACCAGTTTTACACAGTTGT--AAAATAAATAAATCATGG-AACATAATGTAC AGCATGGTGTTTATAGTTAATATT----TATTG----------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------TATATGACAGTTAC TTAGAAAGTAGATCTTAAAA-GTTCTCATCAAAAGAAAAAAAATGTATAACTACATATGGTGGTAG--AAATTAACTAGC CTTATTGTGGTGATCATTTCACAATTTA---TACAAATACGGAATCA------GGTACACTTGAAACTAATATAATG--- -TATGTCAATTGTA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------TCTCAA-----TTTAA-------AAAGATGCTGATTACTA---TTTTAGTCTAAAAATAT------------ -----------------------------------ACACTTTTTATAATTATAGTATG---------------------- -------------TAGTTTTTG >Bos_taurus TTACTTAAGAATGAAAATCACCCCCACTAATTTAATGTAAACATTTGCTT----ATAGCTGATAGCTG-TTTACTACTG- -----------AAAGTTTGTACCTTTTGACCACTTTCATCCAGTTAT--AAAATAA------------GATAAAAT-TAC AGCATGGTGATTATAGCTAATAATACTACATT------------------------------------------------ -------------------------------------------------------------------------------- ----------------------------------------------------------------TATATTTGAAAATTAC TTAG------TATCTTAAAATGTAATCATCACAAG-AAAAAAATATGTAACTATATAAGGTGGTAG--AAATTAACTAGA CTTATC-TGGTGATCATTTTACAGTATA---TACAAATAT-------------TGTATACTTGAAACTAATATAATGTTC -TATGTCAATTATGTGTGTGTGTGTGTGCCCCAGTCGTGTCTGACTCTGTGACCCCATGGACTATATCCTGCCAGGCTCC TCTGTCCATGGAATTTTCCAGGCAAAAATCCTGGAGTGGTTTGTCATTTCCTTCTCCAGTGGATCTTCCCAACCCAGGGA TCAAACCTGTATCTCTTGCATGTCCTGCATTGGCAGGCAGATTCTTTACTACTGAGTCACCTGGGAAGCATATAATATGT CAGTTATATCTCAA------TTAA-------AAAGATGTTTACTAATG---TTTTAAT-TTCAAAAATGTA--------- -----------------------------------CATTATTTTGAAAATGTGATATA---------------------- -------------TAATTTTTG >Equus_caballus ------------GGAA-ACACCTCTACTTATTTAATGCAAACATTTGCTC----ATAG-------ATG-TTTATTACTG- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------TTTTAGT-TACAGATAATCTG-------- -----------------------------------TTTTTTTTTGTAAACGTGGTATA---------------------- -------------TGGTTTCTG >Ceratotherium_simum ------------GGAA-CCACCTCCACTAATTTAATAGAAACATTTGCTT----ATAG-------ACG-TTTATTACTA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------TTTCAGT-TACAAATAATCT--------- -----------------------------------TTTTTTTTTGGAAATGTGGTATA---------------------- -------------TGGTTTTTG >Myotis_myotis ------------GGAA-CCACCTCTTCTAATTCAATGCAAACATATATGT----ATAG-------ATG-TTTAGTATGG- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------CTTTAGT-TACAAATA------------- -----------------------------------ACTTTTTTTGTAAGTGTGGTGTA---------------------- -------------AGGTTTTTG >Rousettus_aegyptiacus ------------GAAA-CCACCTCCACTAATTTAACAAAAAC-ACTTGCT---AATAG-------TTG-TTTAGTACTG- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------TTCTAGT-TACAAATA------------- -----------------------------------ATTTTTTTTCTTTAAGTGTGATAA--------------------- -------------CTTGTTTTA >Condylura_cristata TTCCTTACAAATGGAAACTCCCTCCTTTAGCTTATTACAAATATTTGCTT----ATAG-------ATG-TCTATTATGC- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------TTTCAAC-TACAGATAACC---------- -----------------------------------CCTTTTTTGGTAAAAATAGTA------------------------ -------------TGTTTTTTG >Sorex_araneus TGACTCAAGAATGGAA-CGTCCTGCATTAAGCTAATGTGAACACTCATTT----ACAG-------ATA-TTTATTGCTA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------TTTTAGA-TACAAAGA------------- -----------------------------------ATTTCTGTTGGTAACGTGGCCTA---------------------- -------------TTCCTTTTG >Homo_sapiens TTACTTACAAAAGGAAACCACCTCCACTAATTTAATGCAAACATTTGCTT----ATAG-------ATG-TTTGTTACTG- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------TTTTAGT-TGAAAATATTT---------- -----------------------------------TTTCTTTTTGTAAATGTGGCATA---------------------- -------------TAATTTTTG Dog1_LTR >LTR109B -------------------------------------------------------------TGTTAAAATCAAANACAAA TGGAGACCAGCCTTGAAAATTCCCTGAGC-AGAC-AAAACCAGTTTAGTCATACAAGCAAAGCTTAATTTAGCTTATTTT GC--AAGACTAACTTGAC----------CTGGGTCATTTCTTGCTT-ATGCCTCTGGAAATCATAAGCGAAACTTAAACT GTTTCCCAAA---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------ATTGATATGAGGTAACCACTAACCAATTCCCTATCATTTAAGAAA ATTCTAATATTATAACCAATCAC-------TGTGAAGAATAAACAGTCACTGCCTCCTCACTATATAAGCTGCTTTATAA CAATATA---CCCCTGAGCCTCATTCCATGTTTTGGTTTGAGTGCTCCCGGTTCGCGAACTGTCTTT-TTGGTGTGTGCA CAATAAACTTT--------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------TACTAATTACTACT---TCGGTGAT TCATTGG-TTTTACTTCTGCTATT-------------TCTGAACTTTTGACA---------------------------- -------------------------------- >Canis_familiaris TGAGCAAGCACAAGCTTCTCAAATTAGGCCTCTCCGTGAATGTGCTCCTAA---GCAC---TGTTAAAATCAAACACACA CGGAGACCAGACTTGAAAATTTCCTGAGCCAGACAAAAACCAGTTTTGTCATACAAGCAAAGCTTAATTTAGCTTATTTT AC--ATGACAAACGAAGC---TAACGACCTGGGTCACATCTTGCTT-ATGCCTCTGAAAATCAGAACCAAAACTTAAATT CTTCCCCCAA---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------AATTGATAGGAGGTAACCATTAACCAGTTCTCTTTCATTTAAGAAA ATTCTGATGTTGTTACCAATCAC-------TGTGAAAAATAAACAGTCACTGCCTCCACGCAATATAAGGTGCTTTATGA CAGTATT----CTCAGAGCCTTGTGCTGTGTTTTGGTTTGAGTGCTCCTGACTTGCAAAAGGTCTTTCTTGGTGTGTGTT CAATAAACCTT--------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------CACTAACT---------TCAGCAAT TCCTTGGTTTTTACTTGCGTTTTTGTTCTTATTTTTTC--AAACCTTTGACA---GTAC---TAAGCTGCCAAATGGCCA ATTGGGGCTAAATAAGAGATCTGGTGCACCTG >Felis_catus TGAGCAAGCACAAACCACTCAAATGAAGCCCCTCAGTGAAGGAGCTCCTAA---GCAC---TGTTAAAACCAAACACAAA TGGTGACCAGACTTGAAAATTTCCTGAGC-AGAC---AATCAGTTTAGTCCTACAAGCAGAGCTTAATTTAGCTTATTTT GC--ATGACAAGTGAGGC---TAACAACTCGGGTCACATCTTGCTT-CTGCCTCTGAAAATCATAACAGAAACTTAAATT GTTCCCCCAA---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------ATTGATATGAGGTAACCACTAGGCAATGCTCTTTCATTTCAGAGA ATTCTAATGCTGTTCCCAGTCAC-------TGTGAAGAATCAACAGTCACTGCTGCCACACTATATAAACTGCT-TGTAA CAATATAC---TCGGGAGTCTCATACCCTGTTTTGGTTTGAGCGCTCTGGGTTTGCAAAGTCTCTTT-TTGGTGTGTGCA CAATAAACTT---------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------CCACTAATTACTACTACCTCAGTGAT TCCTTGG-TTTTACTTTTATTTTTGTTTTTGTTTTTTCCTAAACCTTTGATA---GTAC---TAAACTGCCAAATGGCAA ATTGGGGCTAAGTAAGAGATCTGGTGCACCTG >Manis_javanica CAAGCAAGCACAAGCTACTCCAACTGGGTCCCACAGCAAATGAGCTCATAA---GCAC---TGTTAGAACCA----CAGT CGTAGACCAGACTTGAAAATTCCCTGAGC-AGAC-AAAACCAGTTTCGTCATACAAGCAAAGCTTAATTTAGCTTATTCT GC--AAGACAAACGAGGC---TAATGATCTGGTTCATTTTTTGCTT-GTGCCTCTGAAAATTATGAGTGAAATTT-AATT GTTCCCCCAC---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------ATGGATATTAGGTAACCATGAATCAATCCCCTTTGGCTTAAGAAA ATTCTAATATTGTAATCAATCACTAGATTGATTCATGAATAAACTCTCACTGCTTCCACACTGTATACATGGCTTTATAA CAATATAC---CT--GAGACTTATTTCCTGTTTTGG--CAAGGGCTCCTGGTTTGCATCCTGCCTTT-TTGGTATGAGCA CAATAAACTCT--------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------TATTAATTACTACT---ACAGCGGT TCAGTGG-TTTTAGTTTGACTTCTGTTTTTTTTTCCCCCTGAACTTTTGACA---GCAC---AAAACTACCAAATGGTAA ATTGGGGATAAATAAGAGATCTGGTGCACCTT >Sus_scrofa TGAGCCAGCACATGCTACCCAAACAAGTCCCCCCAGTGAATTGGCGCCTAA---GTGC---TGTTAAAAGTCAA------ ------------------ATTTCTTGAGC-AGAC-AAAACCAGTGCAGTCAGACAAGCAAAGCTTAATTTAGCTGATTGT GCAAAAGACAAGTGAGGCTTCACTTGACCTGGGTCACTTCCCACTT-AAGCCTCTGAAAATCATAAGTGAGACTTAAATT GTTGCCCCCA---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------GTTGATATGAGGGAACCACTAACCAATTCTGTTTCATTTATGAAA ATTCTAACATTGTAACCAATCACT------TGTGAAGAGTCAACAGTTACTGCCTCCACATTACATAAACTGCTGTGTAA CAATCTGTAAACTCTGAGCCTCCTTCCATATTTTGGTTGGAGC-TGCCTGGTTTGCAAACTGTCTTT-TTGGTGTCTGTA CCATAAGCTTT--------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------TACTAATCATGACT---TCAGTGAT TCATTGG-TTTTGTTTCTGTTTTT-TGTTTGTTTTCCCCTGTACTTTTGACA---GC--------------TACGGGCAC CTTGGGGATAAGGAAGAGATCTGGTGGACCTG >Bos_taurus TGGGCAAGCACACACACCCCAAATTAGGCCCCTCAGTGAATGAGCTTGTAA---GCAC---TGTTAAAACCCAACACAAA CAGAGA-----CTTGAAAATTCCCTGAGC-AGAC-AAAACCAGGGTAGTCAGACAAGCAAAGCTCAATTTATCGGATTTT GC--AAGACAAGTGAGGC-TCACTTGAC--GGGTCTCTTTTCAAGG-ATGCCTCTGAAAATC----ATGAGACTTAAATC ATTCTCCCCATTTATAGGGGCTTCCCTGGTAGCTCAGCTGGTAAAGAATCTGCCTGCAATGCAGGAGACCCCAATTCGGT TCCTGGGTCAGGAAAGCCACTGGAGAAGGGAACGGCTACCCACTCCACTATTCTTTGGGCTTCCCTGGTGGCTCAGATGG TGAAGAATCCACAGGCAGTGTGAGAGACCTGGGTTTGATCCTGGATTGGAAAGATCCCCTGGAGAAGAGAAAGGCTACCC ACTCCAGTATTCTGGCCTGGAGAATTCAATAGACAGAGGAGCCTGGCAGGCTACAGCCCCTGGGGTCGCAAAGAGTCGGA CATGACTGAGTGACTTTCACTTCTCACTTTCCCCCATTTATAGGTGGGAACCGTGAACCAACTCCCTTTCACTTCAGAAA ATTTTAATGTTGTAACCAAGCGC-------TGTGAGGAATCAACCGTCAGTGCCTCCACATTATATAAGCTGCTCTGTAA CAA----------------------CCATCTCTGAGCCTCGTTGCTCGTGCTTTGCAAGGTGTCTTA-TTGGTGTGTGTA CAATAAACTTCTGGGTTTCCCAAGTGACTCACTGGTGAAGAACTGCTTGCCAGTGCAGAAAATGCGGGTTCTACCCCTGG GTTGGGAAGATCCCCTGGAGAAGGAAAGGGCAATCCACCCCAGCATTCTTGCCTGGGAAATCCCATGGACGAGGAAGCCT GGTGGACTACAATCCATGGGGTCACAAAGAGTCCGACACGACTTAGTAGTAGCACCATAAACATATACCA--TCAGTGAT TCACTGG-TTTC----TGGGTT----TTTTTTCCTCTCCTGAAC-TTGGACA---GCAC---TAAACAGCTAAATGGCAC ACTGAGGATAAATAAGAGATCTGATGCACC-G >Equus_caballus TGAGCAAGCACAAGCTACTCAAATTAGGCCCCTCAGTGAACAAGCTCGTAA----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------GCAC---TAAACTGCCAAATGGCAA ATTGGGGATAAGTAAGAGATCTGGCGCACCTG >Ceratotherium_simum TGAGCAAGCACAACCTACTCAGATTAGGCCCCCCAGTGAATGAGCTCGTAA----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------GCAC---TAAACTGCCAAATGGCAA ATTGGGGATAAGTAAGAGATCTGGCGCACCTG >Myotis_myotis TGAGCAAGCACAAGC--CTCAAATTAGGCCCCTCAGTGAATGAGCTTGTAA----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------GCAC---TAAACTGCCAAGTGGCAA ATTGGGGATAAGTGAGAGATCTGGTGCACCTG >Rousettus_aegyptiacus TGAGCAAGCACGAGCTACTCAGATTGGGCCCCTCGGTGAATGAGCTCGTAA----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------GCAT---TAAACTGCCAAAAGGCAA ATTGGGGATAAGTAAGAGATCTGGTGCACCTG >Condylura_cristata TGAGCAAGCACAATCTACCCAAATTAAGCGCCTCAGAGAAGGAGCT--TAA----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------GCAC---TAAACTGCCAAATGGCAA ATTGGGGCTCAATAAGAGGTCTGGTGCACCTG >Sorex_araneus TGAGCATGCACAAACTACTCAAATTAGGCTTTTCGGTGAATGAGCTCTTAA----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------GCAT---TAAATTGCCAAATGGCAA ATTGGGGATAAGTAAGGGATTTGGTGCACCTG >Homo_sapiens TAAGTACATGCAAGCCACTCAAATTACACCCCTCTGTGAATGAGCTCTTAA----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------GCAC---TAAACTGCAAAAAGGCGA ACTGGGGATAAGTAAGAGATCTGGTGCACCTG Dog2_LTR >LTR9A_EC ----------------------------------------------------------------------TGTGTAGTGT AAGCCCTGACAGTTGTTTT---TTTTTTCTTTTTTGTAATGCAAGTGCCTGAC-TTAAGCTTTGATTGCTGAGGCATCCA CTTCAAA-GAGGCATCC--------------------------------------------------------------- ------------------------------------------------------------------------ACTTCAAA GATGGCTATCTCGAATAAACACATTGCC-AGCCAC--ACGACTAGATAAAGAGCCAGGCCGCCTCCCCCCACTGAGGCTC CTTTGTTTTAGAGATCTTGGTTGATTTCAATAA-CTGACCATT--------------TGGGCCACTTGTTTTTTTTTCCT CTTCCTGTGCTTTAAATTCCNACTCTT-ATGTTTTAAATTCACCAATAAAGAGTGAGCCCACGAAACCCTA-GGCCCCCA CCCTCAACCCCAATAAAAGCAGAACCCCAG------GCCCGT-------------------------------------- GTACTCTC---TCTCTCTCTCTCTACCCGTGACCTCGCTGTGTGG-CCCCAGGTGTGCTGTGTAATTTCCAGG------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------TCCTGTAAGTAATAAAC CTTTATTTTTTCA--AAGTTTCCTGATGGTTATTGCTGAAGGGCATCTTGCAATCATA---------A-TAAGAACCACA AGGGCTGGTCCAGCCACAACATTG-GTTATTGATAGGCTGAGACNGGCACAAAACA------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------ >Canis_familiaris TAATAAGTATAAGAAAATTAATAAATGAGTA-AATTACTGTCTGAG--------TGAT-G---AGTT------ATAG-AT CAACCCTAACAACTGGTTTTCTATTTTTCTTTTGTGTAATGCAAGTGCCCCAC-TTAAGCCTTGATTG------------ --TCAAA-GTG---TTC--------------------------------------------------------------- ------------------------------------------------------------------------ACTTCAAA GATGGCTA-ATCTGATAAACACATTATC-ACCCACAGTAGACTAGATAAAGGTCCAAGCCACCTCCTCTGGCTGAAGCTC TTTTATTTTAGAGATCTTGGTTGATTTCAATTA-----CTATT--------------TGGGCCACTTGTTCTTT---TCT CTCTCCGTGCTTTTAATTCCCATTCTT-ATTTTTTAAATTGACCAATAAAGAGTGAGCCCAGAAAACCCTA-GGCTTCCA CCCTGAACCCCAATAAAAGCAGAACCTCAT-------------------------------------------------- AAGTTCTCTGTTCTCTCTCTCTCTACCTGTGATGTCACTGTATGGCCCCCAGGTGTGCTGTGTAATTCACAGG------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------TCTTATAAGCAATAAAT TTGTAATTTTTCA--AAGTTTCCTGATGGTTATTGCTGAAGGGACTCTTGTAATTACA-------------AGAACCACA -------------------CATTG-GTTATTGAGAGGATGAG----GCACAAAATATT---GATG---TGCACTCATATG AATTTTTATTTTTTAAATTATTTTTATTTGGGATCCCTGGGTGGTGCAGCGGTTTGGCGCCTGCCTTTGGCCCAGGGCGC GATCCTGGAGACCCGGGATCGAATCCCACGTCGGGCTCCTGGTGCATGGAGCCTGCTTCTCCCTCTGCCTATGTCTCTGC CTCTCTCTCTCTTTCTGTGTGTGTGACTATCATAAATAAATAAAAATAAAAATAAATTTTTTAAAATTATTTTTATT--- TATTTTTATGTGAATTTTTA--AAACAAAACTAAGATCATAGAGTAGGCAT-GC >Felis_catus TAATAAATATAAGAAAATGAATAAATGAGTAGGATTAGTGTATGAA--------TGAT-G---ATTT------ATAGTAT AAACTCTGACAATTGGTTT--TATTTTTCCTTTTTGTAATGCAAATGCTGTAC-TTAAACCTTGATTG------------ --TCAAA-GTG---TCC--------------------------------------------------------------- ------------------------------------------------------------------------ACTTCAAA GATGGCTGTCTCCAGTAAACACGTTGTCTAGTCACAGTAGACTAGATACAGAGCCAGGCCACCTCCCCTGACTGAAGCTC TTTGGTGTTAGAGATCTTGGTTGATTTCAAGTA-CTGACCATT--------------TGGGCCTCTTGTTTTTT----CT CTCCTTGTGCTTTAAATTCCCATTCTT-CTGTTTTAAATTCACCAATATAGAATGAGCCCACAAAACCCTA-GGCTTCCA CCCTCAACCCCAATAAAAACGGAACCCCAACATTCTGCTTGC-------------------------------------- TAGCTCTC---TCTCTCT-TGTCAACCTGCGACCTCA--GTGTGG-CCCCAGGTGTGCTGCGTAATTTGCAGG------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------CCTTATAAACAATAAAC TTTTAATTTTTCT--GAGCTTCCTGATGGTTATTGATGAAGGGCATCTTGCAATCATA---------A-TAAGAACCACA ------------------ACATTG-GTTATTGATAGGCTGAGATCAGCACAAAACATT---GATA--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- TACACCCATATGAATTTTTA--AAACAAAACTAAAATCATAGAGTAGGCACTGC >Manis_javanica AAATAAATGTAAGAAAATGAGTAAATGAATG-GATTGGTGTATGAA--------TGATAT---GATA-------TAGTAT AAACCCCAACGA--GTTTT----TTTTTCCTTGCTGTAATGCAAGTGTCTGAC-TTGAGCTCTGATTG------------ --CCAAG-GCA---TCC--------------------------------------------------------------- ------------------------------------------------------------------------GCTTCAGC TGTGGCTGTCTTGAATAAACA-GCTGCC-AGCCCC--TTGCCTAGGTATAGCACCAGGCCACCTCTCCTGACTGAGGCTC TTTTGTTTTAGAGATCTTGGTTGATTTCAATGA-C--ATTACT--------------GTGGGCCCTTGTTTTTT----TC CTCTCTCTACTTTAAATTCCTGCTCTTAATGTTTTAAATTTACCATTAAAGAATGAGCCTGTAAAAACCTA-GGTCCCCT CCCTCGACCTAATAAAAAATAAAACCCTT-------GACTGT-------------------------------------- GAGCC------ACTTTTTCTCTCTACCCACAACCTCACTGTGTGG-CCCCAGGTGTGCTGGGTAGTTTCTAGT------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------TCCTATAAATAGTAAAC CTTTACTTTTTC----AGTTTCCTCATGGTCATTGCTG-AGGGTATCTTGTAATCATA---------ATTAAGAACCACA AGGGTTGGTCCAACTTAAACAATGAGATATTGATAGGCTGAGACCAGCACAAAATAT----GATA--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- TACACTCATAGGAATTTTTA--AAACAAAAATGAGATCATACAATAGGTGTTGC >Sus_scrofa TAATAAATATAAAAGAATGAATAAATGAAGG-GGTTAGTCTATGAA----GGATTAAT-G---GATG------ATGGTAT AAACTCCTACAGTTTTTGT--TTGTTTTTGTTTTTCTAATGCCAGTGCCTGAC-TTCATCTTTGCTGG------------ --CTGAG-GCA---TCC--------------------------------------------------------------- ------------------------------------------------------------------------ACTTCAAA GGTGTCGGTCTCGAAGAAACACATTGC--------------------AGAGAGCCAGGTCACCTCCCCACACTGA-GCTC CTTAGTTCTAGAGGTCTTAGTTGATTTTAATAA-CTGATGATGTA--TTTCTTTCAGTTGGCCACTTATTTTTG------ -ACTTCATGCTTTACATATCCACTCTT-ATGTTTTAAATTCACCAATAAAGAGTAAGACCAAGACAGCCTT-AGCCCCCA CCTTAGACCCAGTAGAAACAGGAACCCTGCTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCACAGGCAC ATGCGCTCATGTTCTACTCTGCCTACCCG-GACCTCACTGTCTGG-CCTCAGGTGTCCTGTGTAATTTCTGGG------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------TTCTATAAATAGCAAAC CTTTATTTTTTTTTCAAGTTTCCTGGTGGTTATTACTGAAGGGTGTCTTGCATTCATATGCATTCATATTGGGAAGCACA TGGGCCAATCCAATAACAATATC--ATTGTCAGTAGGCTGAGACT----------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- TGCACCCATATGAATTTTTA--AAACAAAAATTAGATCATACAATAAGGATGGC >Bos_taurus TAATAAATATGAAAGAATGGATAAATGAAGG-AGTTAGTCTATGAATGATGCATTGAT-G---GTTT------ATAGTAG AAACCCTGAGAG--GTTTT---GATTGTCGTTTTTTTATTGAAAGTGCCTGACTTTAAGCTTTGATTGCTGAGGCATCTA CCTCAAAGGTGGTGTCCATGGAGTTTCCCAGGCAAGAATACTGTGGTTGGTTGTCATTTCTTTCTCCAAGGGATCCTCTC AACCGAGGGATTAAACCCAGGTCTCCTGAATTGCAGGCAGATTCTTTACTGACTGAGCTGCCAAGGATGCTTACTTCATT GGTAGCTATCACTAATAAACATATTTC--------------------AGAGATCCAGGTCCCACCCCCAACTTGTAGCTC CTTTGTTTTAGAGGTGTTAGTTGATTTTAATAATCTGATGATTCATTTTTTTTTCAATTGGCCACTTAGTTTTT------ CTCTTCCCACTTTACATTTCTACTCTC--TCTTTTAAATTTGCCAGGGAAGAATGAGCCCATAAAAACCCATAGCCCCCA CCTTTAACCCCAGTAAAAGCAGAAACTCAGGCCCATGCTTGG-------------------------------------- -----------TCTCTTTCACTCTTCCT---------CTGTGTGG-TCCCAGATGTACTGTGTAATTCAAGATGCTGTAA GTCATCAGTTCAGTTCAGTCGCTCAGTCGTGTCCTACTCTTTGTGATCCCATGGACTGCAGCATGCCAGGCTTCCGTGTC CATCACAAACTCTTGGAACTTGCTCAAACTCATGTCTGTCGAGTCTGTGATGCCACCCAACCATCTCATCCTCTGTCGTC CCCTTCTCCTCCTGCCTTCAGTCTTTCCCAGCACTGGAGTCTTTTCCAGTGAGTCAGTTCTTTGCATCAGCTGGCCAAAG TATTGTAGCTTCTGCTTCAGCATCAATCCTGCCAATGAATATTCAGGACTGACTTCCTTTAGGATGGACTGGTTGGATCT CCTTGCAATCTAGGGGATTCTCAAAGAGTCTTCTCCAACACCGCAGTTCAAAAGCATCAATTCTTTGGTGCTCAGCTTTC TTTATAGTCCAACTCTCACATCCATACATGACCACTGGAAAAACCATAGCTTTGACTAGACAGACATTTGTCGGCAAAGT AATGTCTCTGCTTTTTAATATGCTGTCTAGGTTCGTCATAGCTTTTCTCCCAAGGAGCAAGTGTCTTTTAATTTCATGGC TGCAGTCACCATCTGCAGGGATTTTGGAGCCGCCAAAAATAAAGTCTGTCACTGTTTCCATTGTTTCCTCATCTATTTGC CATGAAGTAATGGGACCAGGTGACATGGAATGTTGAGTTTAAGCCACTTTTTTTTTCACGCTCCTCTTTCACTTTCATCA AGAAGCTCTCTAGTTCTTCTTCACTTTCTGCCATAAGGGTGGTGTCCTCTGCATATCTGAGGTTGTTGACATTTCTCCCA GCAATCTTGATTCCAGCTTGTGCTTCATCCAGCCCAGCATTTCACATAATGTACTCTGCATATAAAAGTTTAATAAGCAG TGTGACAATGTACAGCCTGTTCGTACTCCTTTCACAGTTGGAACCATCTATTGTTCCATGTCTGGTTCTAACTATTGTTT CTTGACCTGCATACAGATTTCTCAGGAGGCAGGTAAGATGATCTGGTATTCCATCTCTTGAAGAATTTCCTACAGTTTGT TGTGTTCTACACAGTCAAAGGCTTTGGCGTAGTCAATAAAACACAAGTAGATGTTATTCCGGAACTCTCTTTCTTTTTCT ATGATGCAATGGATGTTGGCAATTTGATCTCTGGTTCTTCTGCCTTTTCTAAATCCAGCTTGAACATCTGGAAGTTCATG GTTCACATACTGTAGAAGCCTGGCTTGGAGAATTTTGAGCATTCCTTTGCTAGCGTGTGAGATGAATGCAATCAGTCGTG TGGTAGTTTGAATGTTCTTTGGCATTGGCCTTCTTTGGGATTGGAATGAAAACTGACCTTTTCCAGTCCTGTGGCCACTG CTGGGTTTTCCAGATTTGCTGGCATATTGAGTGCAGCACTTTCACAGCATCATTTTTTTAGGATTTGAAATAGCTCCACT GGAATTCCATCACCTCCACTAGCTTTGTTATTAGTGATGCTTCCTAAAGCCACACAAAGATGCTTCTGTAAATTATAAAC CTTTATTTTTTC---AAGTTGCCTGGTGATTATTGCTGAAGAGTGTCTTGCACTT----------------AGAACCACA AGGGCTGGTTCAATAACAGTGTTA-GTTATTGGTAGGCTGAAACTGGCACATGA--------AGA--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- TATACCCATATGAATTTTTT--AAACAAAAATTAGATCTTACAATAGGTATTGC >Equus_caballus TAGTAAATATAAGAGAATGAATAAACGAATT-GATTAATGTATGAA--------TGAT-G---GATA------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- TACGCCCATATGAATTTT----AAACAAAAATTAGGTTATATAACAGATATGGC >Ceratotherium_simum TAATAAATAGAGGAGAATGAATACATGAATG-GATTAATACATGAT--------TGAT-A---GATA------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- TACACCCATGTGTATTTTT---AAACAAAAATTAGATCATACAACAGGTATGGC >Desmodus_rotundus TAATAAATATAAGACAAGGAATAAATTAATA-GATTAATGTACGAA--------TGAT-G---GATA------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- TCCATCCATATGAATTTTT---AAACAAAA-TTAGATCATAAAATAGGTATTAT >Rousettus_aegyptiacus TAATAAATACAAGACAATGAATAAATGAACA-GATTAGTGTATGAA--------TGAT-G---GGTA------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- TATATCCATATGAATTGTT---AAATAAAAATTAGATTGTACAATAGGTATTGT >Condylura_cristata TAATAAGTACA--ATGAGTAATAAATAAATG-GATTAGTGAATGAG--------TGAT-G---GAGA------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- TACACCAATATTAAATTTG---TAACAATAATTAGGTCATGCAATAGATAATGC >Sorex_araneus TAATACGT-----GAAATGAATAAATATAAATAATTAGT----AAA--------TGAT-G---AATG------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- AGCATATATATGCATGTTTATTAAATAAAAATTCTATTATGCAATAGATATCAC >Homo_sapiens TAATAAATATTAGAGAGTGAAGAAATGAATG-AATTAGTGAACAAG--------AAAC-G---GATA------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- TACACTGATATGAATTTTTT--AAACAAAATCTAGATTAT-----AAGTATTGC Dog3_LTR >CARERVR1_LTR --------------------------------------------------------------------------TGTTGG GGAAGGTCATCG-AGAAGACGTGACCGCCGGTTGACCCGTGAGCTGGAC-----CCGGGCAATCAGAGGCTCCTCACCCC CTCCCCTGTCCTTGGAATGTGGGTTCCGCTTGCCTTCCCCGCTCCCAGAGGCTGCTCCAAGGACACAGCCTTGAGATA-- GTGA-----TGTGGTGTTGAGAACACCTGNACGGTATACGTGACTGAACCCAGTTAAGGCCTCTATATAAACTTTTAAGA TT-TGGCGGG--CGGGTGCGGAGATCTACTCGTCTTG------CTGCCGCCCAAGACAAGCCTCGTATGTAAGTTCCCTT TGCTTATTAAANCTGCCACCTACCAACCTGGAGTGGCCTGCCTCTTTCTTCGGTCTCTCCCTG-CCCTCTGCGTACGGGG GCCGGTTTCAGATTACACCCGGGAAGCTCCCGAGGGGGTTGCGAACCAACA----------------------------- ---------------------------------------- >Canis_familiaris ATAT-----GATTGCATCAGTTACAACTACATTGTTATTAA--AGAACCTTAGGTAGGACATT---ATGGT---TGTTGG AAGAGGTTATC-TAGGGGATGTGACCTCCTGTTGACCTGGGGTTTGTAC------CAGGCACTCAGACACTGTT---CAT CTTTCC-ATCTTTGGAATGTATG--------------CTCACAATGGGAATCCTTTTTAAAGGAACAACCTTGAGAGAAC AAGACCATCTGTACCATTCACACCATCTGGACCAAATACATGACCGAACCCAGTTACCACTGCTATAGAAACCT-TAAGA TTTTGGCAGGCAGGTGTGGGGATCTACTCCTCTTGTG--------GCCACCCAGGGCAAATCT----GATGAGTTGCCTC -GCTTATAGAACCTGCAATCTACCAGTGTGGAGTGTCCCGCTTCTTTTTCTGGTCTCTCCTTA-CCCTCCTTCTTTGGGT -CCGATTTCAGATTTCACCTAGGAAGCTGCTGAGG---TTGCAGACCAGTA---GTGGC---ACAGGA-AT-------GC GCTGCCTACTTAAAAGTCCTCTCTCATCCCCATTTCATCC >Felis_catus ATAT-AAAAAATTACATCAATTACAGCTACATTGTTTTTAA--ACAACCTTAGGTAGGACATT---GTGGT---TGTTGG AGGAGATCATT-TAGAAAGTGTAACCTCCTGTTGACTTGTGATCTGGAC-----CCAGGCAATCAGAGACTTTTCATCTC CTTTCC-ATCTTTGGAATGTATGGTCTGCCCACCATTATCACTATGAGAATCATTTTCAAGGACACAACCTTGAGAGAAC AAG-------ATGTGGTTCAGAC-ATCTGGACTGAATACATGACAGAACCCAGTTACCATCTCTCTATAAACTT-AAAGA TTGTGGCAGGCAGGTGTGGAATTCT-CTCCTCTTGTGCCCCCCCCCCCCCCCATGTCAAGTCT----GGGAAGT------ -GCATATTCAACTTGCCACTGACCAATCAGGAGTAACCTGCTTCTTTCTTTGGTCTCTCCTTG-CCCTCTGTGTTTGGGT -CTCATTTCACATTTCACCTGAGAAG-TGCTGAGG---TTGCAGACCAGCA---GTGGC---TCAGAA-AT-------GT GTTGCCTACTTAAAGATCCTTTCTCATCTTCATTCCACCC >Manis_pentadactyla AGATATTA--------------------ACACTGTTACTAG--GTAACCT----GAGGAC-CA---GTGGC---TGTAGG AGGAGGTCATG-GAGAGGATGGGACTCCTGGTTGACCCTCGAGCTGGAC-----TGGAGCAATGGGAGGCTCCT--GTAC CCTTCCTGCCCTTTGAA---------------CTGTTCCTAAAATGAGAGCCCTTTTCAAGGACGCAGCCTTG------- ---------------------ACTATCTGGA-----TATGTGGCTGCACCCAGTTAAGGTTTCTACATAAATTTGTAAGA TTATGGT-GGCAGGTGTGGAGATCTACTCATCTTTCT--------GCCCTGCAGGACAAGCCTTGTATAGAAGTTCTTTT -GCTTGTTGAACCGGCCGCCGGCCCACCTAGAGTGGCCTGCCTCTTCCTTTGGCCTCTCCTTGCCCCCCCGTGTATGGGG -------CCAGATTCCACCTGCGAGGCTCCCAAGA---TCTCAAATCAA-----GGGGC---ATGGGATAT-------GG GCTGCGTACTTAGAGGTCCTCCCTCATCTCCATTCCACCC >Sus_scrofa ATATATTGCAATGATATCAATTACAAATGTATTCTTGTTAA--A-AACCT----TCGAACACT---GTGGC---TGCTGA AAGAGGTCATCAAAGAGGAGATGACAACCAGTTGACCTAGGAGCTGGACCTGGGCAGGGCAACTGGAAGCTCCTTGCCTC CTCCCCTGGCCTTGGAATGTATGTTCTGTCCACCATTCCCCCT-TGGGAGCTGTTTTCAAGGACTCGGCCTCGAGAGAAC AGT-------GTGTTTTTGAGATCATCTGGACTGCGTATGTGACTGAATCCAGTTAAGATCTCTATAGAAACTTTTAAAA TTCTGGCAGGTAGGGGTGGAGATTTATTCATCTTGTG--------ACGTCCTAAGACAAGCCTCATATGTAAGTTCTCTT -GCTTCTTAAACTTGCCACCTGTCCATCTGGAGTGCTCTGCCTCTTTCTTGGGTCTCTCCTTG-CCCTCCACGTATGAGA GCCAGTTTCAGATTTTACCCAAGAAGAACCAAAGA---TTTTGAACCTACA---ATGGC---ATAGAA-AT-------GT ATTGCCTACTTAGAGGTTGTNNNNNNNNNNNNNNNNNNNN >Tursiops_truncatus ATAT---------------ATTACAATTACTTTCTTATTAA--A-AACCT----TAGAAAACT---GTGGC---TGCAGA AGGAGGTCCTC-AAGAGGACATGACTACCAGTTGACCCAAGAGCTGGACCTGGGCAGGGCAATCGGGA--TCCTCACCAC CTCCCTTGGTGTTGGAATGTACATTCTGTCCACCATTCCCACAGTGGGAGCTGCTTTCAAGGGCGCAGCCCTGAAAGAGT AAG-------GTGTTGTTGAAACCATCTGGATGGTATATGTGACTGAACCCAATTAAGACCTCTATATAAACTTTTAAAA TTCTGGCAGGTGAGGGTGGAGAGCTACTCATCTTGTG--------GCTGCCCAGGACAAGTCTTGTATGTAAATTCCCTT -GATTATTAAACTTGCCACCTACCAATCTGGAAAGGTCTGCCTTTTTCTTGGGACTCCCCTTG-CCTGCCATATATGGGG ACCAGTTTCAGATTTTATCCGGGAAGGACCAAAGG---TCTT-GACTTG----------------AGA-AT-------GT GTTGCCTAATTAAAGGTTGTTNNNNNNNNNNNNNNNNNNN >Equus_caballus ATATATTACAGTTA-ATCAACTACAATTACTTAGTTATTAA--ATAACCT----TGGAATGTT----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------GTGGC---AGGGGA-ATTGTGGCAGT GTTGACTACTTAGAGGTCTTCCCTCATCCGCATTTCACCC >Ceratotherium_simum ATATAATACAGTTA-ATCAATTACAATTACTTTGTTATTAG--ATAACCT----TGGGATATC----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------ATGGC---AGGGCA-AT-------GT GTT-CCTACTCAGAGGTCTTCCCTCACCCCCATTCCACCC >Myotis_myotis ATACATTACAATCACATCAATTACAATTATATTATTACTAA--A----------TAGGATAT------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------CTGGC---ATGGGA-AT-------AT CTTGCCTTCTTATAGGTCCTCA-TAACCTCCTTTCCACCC >Rousettus_aegyptiacus ATAT---------------ATTACAATTACACTTTTATTAA--ATAACTT----TAGGACAT------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------GTGGC---ATGGGG-AT-------GT GCCACTCTCTTGGAGGTCCTCCCTCATCC-CATTTCACTC >Condylura_cristata ATATATTTC------AGCAGTTACAATTGCAGTACAATTAA--CTAATCT----------ATT----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------GTTGC---ATGGGA-AT-------GT GTTGCCAACTTAGAGGTCTTAACTCATCCCTCTTCTACCC >Sorex_araneus ATACATTCCAATGACGTCAATTTCAATTATGGTCTAATTAAATTTTGTTC----------ATC----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------GTGAC---ATGGGT-AT-------TT GTTAGCTAATTGGAAGTCCTACCTTATTCCTGTTTT-CCC >Homo_sapiens ATATATTATACTGACATCAATTACAATTACATTACAATTAA--ATAACCT----TGCTATATT----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------GGAGC---ATGGGA-AT-------AT GTTGCCAACTTAT---TCCTGCCTCATCCCTATCCTACCC Dog4_LTR >MER34C_CF -----------------------------------------------------------------TGAAGGGGAGCAGAA TTTGCCACCCCA-AAATATGCCTCTTTGGCATAAGGATTA-----TTTTAGGCTGATTATTTTTAAGAAACTGCAGACAC AGGAGAAGCTCTGAAAACCGAGTAGAAGTTACCCTTTTGTAAGAGACATTTACATTTATAA---GGGAAATCTCCATTTG TAAGGGTGTCTCCCTCTCTGTACCAGGAAGAGGAGGATGACTCTAAATCTCTAGAAACTCTTATCAATGGAGAAG---GC AAGGACTTAAATCTGCATAACAACCTTACCCTTGTTTACTGTGCTTTTCCTGGTAACCTCCCATAACTGACT-CCCCACC CCCAACA----TCTTTTTTGTCTTTAGCTGGAGATGGTATTTAAGGTGATGGCTTGGGCCATTTCGGGG-AGTTACTCAG TTTTCCTGGGTCTCTCCCATGTATACAGGAGGTATACATATGTTATTAAACTTTTGTTTGTTTTTCTCCTGTTAATCTGT CTTATGTCAATTTGATTCTTAGACCAGCCAG--AAGAACCTAGAAGGGTAGAGGAAAATTTTTTTCTCCT---CAACA-- ---------------------------------------------------------------------------- >Canis_familiaris GATAGGCTACCCACTTTGCTAAAGCTT-----CTTGAGTTTAAGGATATTGCTTA---TTAG---TGAAGGGGAGCAAAA TATACCACCCCA-AAATATGCCT-TTTGGCATAAGAATTA-----TTTTAGGCTGATTATATTTAAGAAACACCTGACAT AGGACAAGCTCTGAAAGC--AGTAGATGTTACTCTTTTGTAAAAGACATTGACATTGGTAA---GACAAATCCTTATTTG TGAGG-TGTTTCCCTCTCTGTACCAGGAAGAGAAGGTTGACTTTGAATCTCCTGAAACTCTTATCAATGGAGAAA---GT AAGGAATTAAATTTGAATAACAAACATACCCTTGTTTACTGTGCTTTACCTGATAACCTCCCTTAACTGGCTGCCTCACC CCCAATG----TCTTCTTTGTCTTTAGCTGGCGATGATATTTAAGGTGACAGCTTGGGACATTTTGGGG-AGACACTCAC TTTTCCTGGGTGTTTCCCATGTATACGGGAGGTAT--ATATGTTGTTAAACTT----TTGGTTTTTTCCTGTTAATTTGT CTT-------TTTATTACAGAGATGTCTCAGCCAAGAACCCAGAAGGGTGAAGGGAAAATTATTTTTCCTTCCCCACA-- -TTAG---CCAAAAAAGAAAAAAATAAAA------------------TTCTTAAACGTTGGCTAGATTCCCAGCAA >Felis_catus GCTCAGCTACCCAC-TTGCTAAAGCTT--CCTCTCAAGTTTAAGGATATTGCTTA---TTAG---TGAAGGGAAGCAAAA CATACCGCCCCA-AAATATACCT-TTTGGCATAAGGATTATTTTGTTTTAGGCTGATTATTTTTAAGACACAGCTGACAT GGGAGAAACTCTGAAAGC--AGTAGATACTACTCTTTTGTAAAAGACTTTGACATTC-TAA---GGCAAATCTTCAATTG TAAGGGTGTCTCCCTCTGTA---CAGGAAGAGAAGGATGCCTTTAAATCTCCGGAAACTCATATCATTGGAGAAG---GC AATGACTTAAATCTGTATAACAGCCATACCCTTGTTTACTGTGCTTTCCCTGATTACCTCCCTTAACTGGTTGCCTCACC CCCAACA-------TCTTTGTTTTTAGCTGGAAATGATATTTAAGATGGCAACTTGAGACACTTTGGGG-----AGTTAG TTTTCCTGAGTGTTTCCCATGTATACAGGAAGTAT--ATATGCTATTAAACTT----TTGCTTTTCTCCTGTTAATCTGT CTT-------TTTATTTCAAAGATGTCTCAGCCAAGAACCTAGAA---GAGGAGGAAAATTATTTTTCCTACCCCACA-- -TTAG---CAGCCGCACCCCACAAAA--------------------TTTCTTAAACATTGGCTAGATTCCCAGATA >Manis_pentadactyla GCTGGGCTACCCACTTTCCTAAAACCT--CCTCTCAAGTTTAA---TAGTGGTTA---TTAA---TGAAGGGGAGAAAAA CATACCATACCA-AAATACATCTCTTTGGCATATTGATTA-----TT-----CTGATTATTTTTAAGAAACAGCAGATGC AGAAGAAGCTCTGAAAACCAAGTAGACGTTTCCC-TTTGTAAGAGATATTTACATGTATAA---AGAAAATTTCAATTTG GAAGGGCGTCTCCCTTT--AGACCAGGAAGAGGAGGATGACTCTAAATCTCATGAAACT--TATCAATGGAAAAAAATGT GGCAACTTAAATCTGCATAACAACCTGACCCTTATTTACTGTGCTTTGCCTGATAACCTGCCATAACTGACC------TC CCCAGCAACATCTCCTTTTGTCTTTAGCTG---ATGGTATTTAAGGAGGCAGGTTGAGCCTTTGTGGGGAAGTTACTCAC TTTTCCTGGATCTCTCTGTCGTATACAGGAGGCAT--ACATTTTATTAAAC------TTATTTTCCTTCTGTTAATCT-- --T-------TTTATTATAGGGG-GTCTCAGTCAAGAACCTAGAAGGGTGGAGGGAAAATTA-TTGTCCTCCCCTACG-- -CTAG---AAAAAGAAACAGATAAAAA-------------------TTTCTTAAGCATTGGCTAGAATCCCAA-AA >Sus_scrofa ACTGGGCCACCCAGTCTCCTAAAGCTT--CCTCTCAAGTTTGAGTATATTGCTCA---TTAG---TGAAGGGGAACAAAA CACACCACCCCCAAAATATGCCC-ATTGACA-AAGGATTA-----GCTTAAACTGGTCATTGTTAAGAAAGAGCAGACAC AAGAGAAGCTCTGAAAACGGAGTAGAACTTAACACTTCGTAAGAGGCAAGTGCTATTATAAAATGGGAAATCTCCATTTG TAAGGGTGTCTCCCTCTCTGCACCAGGAAGAGAAAGATAACTCCAAATCTCTAGGCCCT----------AAGAAG---GC AAGGACTTAAATCTGCATAACAACCCGACCCTTGTTTGCTGTGCTTTTCCTGGT-ACCCTCTTCAACTGGTCTCCTGGTG TCCCCCAACAAATTCTTTTGTCTGTAATTGGAGATGTTGCTCCGGGTGGCAGCTTGGGCCATTTCCAGG-AGTTACTCAG TTTTCCTGGATCTC-CGCACGTACACAGGGGGTAT--AGGTGTTATTAAACTTCCGTTTGTTTTTCTCCTTTTATTCTGT TGT-------TTTATCACGGGGACATCTCAGCCAAGAACCTAGAAGGGTGGAGGGAAAATTATTTTTCCCCCACCACA-- -TAAG---CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTAAAATTCTTTAAACATTGGCTAGATTCCCAGCAA >Tursiops_truncatus ACTGGGCCACTCAGTTTCCTAAAGCTT--CCTCTCAAGTTTAAGGATATTGCTTA---TTAG---TGAAGGGGAGCAAAA CATACCACCCCA-AAATACGGCCCTTTGACATATGG-TTA-----TTTTAAGCTGGTCATTTTTGAGAAACAGCAGACAC AGGAAAAGCTCTGAAACCTGAGTAGAAGTTCCCCTTTTGTAAGAGACAAGTCCATTTATAA---GGGAAATCTCCATTTG TAAGGATGTCTCCCTCTTAGTACCGGGAAGAGAAAGATGATTCTAAATCTCTAGAAACTGTTAACCACAGAGAAG---AC AAGGACTTAAATCTGCATAACAACCTTATCCTTGTTTACTGTGCTTTTCCTGGTCACCTCCCACAGCTGGCCTCCCCGCC CCCCAAC-------ATCTTCTTTTTAATTGGAGATGTTACTTAAGGTGGCAGCTTTGTACATTTCCGGG-----AGTTAG TTTCCCTGGGTCTCTCCCCTGTATACAGTAGGTAT--ACATGTTGTTAAACTT--GTTTGTTTTTCTCTTGTTATTCTGT CTT-------TTTATCACAGGAAGGTCTCAGCCAAGAACCTAGAAGGGTGGAGGGAAAATTATTTTTCCTCCACCACA-- -TTAG---CAAAAAAAAAAAAAAAAAAAAAAGATTAAAA-------TTTCTTAAACATTGGCTAGATTCCCAGCAA >Equus_caballus GATGGGCCACCCACTTTCCTAAGGCTT--CCTCTCAAGTTTAAGGATATTGATTA---TTAG------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------CAAAAAACAAAAATAAAAATAAAAAA------------TTTCTTCAATCTTGGCTAGATTCCCAGCAA >Tapirus_indicus GCTGGGCCACCGACTTTCCTAAAGCTT--CCTCTCAAGTTTAAGGATGTTACTTA---TTAG------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------CAAAAAAAAAAAAAAGATAAAAAA--------------TTTCTTCAACATTGGCTAGATTCCCAGCAA >Myotis_myotis GCTG--------ACTTTCCTAAGGCTC--CCTCTCAAGTTTAAGATTATTGCTTA---CTAG------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------CCAAAAAATAAGATAAAAAT------------------TTTATTCAACATTGGATAGATTCCCAGCAA >Rousettus_aegyptiacus ACTGGGCCACCCACTTTCCTAAAACTT--CCTCTCCAGTTTAAAGATATTGCTTA---TCAG------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------CAAAAAAAAA--------------------------------TTAAACATTGGCTAGATTCCCAGCAA >Condylura_cristata GTTAGACCACCCAG-TTCCTAAAGCTT----CCTCAAGTTTAAGGATATTGCTGA---AAAA------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------CAACAACAAAGTATAAATAAAAATAAAAA---------GTTCTTAACCATTGGCTCCATTCCCAGCAA >Erinaceus_europaeus GCTGGGCAAGCCAGTTTCCTAAAGTTTTGTCTTTCAAGCTGAAGGGTAGTTCTCA---TTAA------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------CACTCAACAACAAAAAGAGTTCAATTTTTTTT------TTTCTGAAACATTGGCTAGATTCCCAGCAA >Homo_sapiens ------CCACCCACTTTCC---AGCTT--CCTCTGAAGTTTAAGGATATTGCTCA---TTAA------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------GAAAAAATAAAATAATATAAAAA---------------TTTCTTGAATGTTGGCTAGATTCTCAGCAA Dog5_LTR >MER34C_CF ------------------------------------------------------------------TGTTGAGGAG---A AAAAAATTTTCCTCTACCCTTCTAGGTTCTTCTGGCTG-----GT--CTAAGAATCAAATTGACATAAGACAGATTAACA GGAGAAAAACAAACAA-AAGTTTAATAACATATGTATACCTCCTGTATACATGGGAGAGACCCAGGAAAACTGAGTAACT CCCCGAAATGGCCCAAGCCATCACCTT----------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------AAATACCATCTCCAGCTAAAGACAAAA--AAGATG TTGGGGGT------GGGGAGTCAGTTATGGGAGGTTACCAGGAAAAGCACAGTAAACAAGGGTAAGGTTGTTATGCAGAT TTAAGTCCTTGCCTTCTCCATTGATAAGAGTTTCTAGAGATTTAGAGTCATCCTCCTCTTCCTGGTACAGAGAGGGAGAC ACCCTTACAAATGGAGATTTCCCTTATAAATGTAAATGTCTCTTACAAAAGGGTAACTTCTACTCGGTTTTCAGAG---- CTTCTCCTGTGTCTGCAGTTTCTTAAAAATAATCAGCCTAAAATAATCCTTATGCCAAAGAGGCATATTTT-GGGGTGGC AAATTCTGCTCCCCTTCA------------------------------------------------------------ >Canis_familiaris GTAGTGTGAAAAAA-CTTTAGTGAAATTGGAAACTTGACAAAAA-----TATTTTT---GCCT---TGTAAGGGAGG-AA AATAATTTTCCCTCTACCCATCTTAGTTCT--TGGCTAAGATACTCCCTGTAAT----------AAAAGACAGATTAAGA AGAGAAAAATAAATGG-AAGTTTAATAGC--ATGTATACCTCCCATATACATAACAGATACCCAGGAAAAC----TAACT CCTTGAAAT-GCTCAAGCCACCACTCT----------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------GAATACCATTTCCAGCTAAAGACAAAAGAAATGTT CTAGAAGA----GGAGGAGGCCAGTTAAAGAAGGTCACCAGGAAAA---------------------------------- ---------------------------TAGTTTCTAGAGATTTAGAGGCATCCTTTTCTTCCTGATACAGAGAGGGAGAC ACCCTTACAAATAGAGAGTTCCTTTATAAATGTACATTTCCTTTACAAAA-GGTAACTTCCACTTGGTTTT-GGAA---- CTTTTCCTGTGTCTGCTGTTTCTTAAAAATAATCAGCCGAGAATAATTCTTATGCCAAAGAGGCATATTTTGGGGGTGAC AA-TTCTGCT-CCTTGAA---GCCT---CCTACACCTATGCTGAATTCTAAACCT------ATTTTATAAATTATTTT >Felis_catus GTGATGTGAAATAA-CCTTAATAAAATTGGAAAGTTGACAAAAA-----TATTTTA---GCTT---TGTAAGAGAGGAAA AATAATTTTTCCTGTACCCTTCTTGGTTCT--TGGCTGAGACACTCCCTGTAATT-----AAAAAAAAAACAGATTAACA GGAGAAAAACAAACAG-ACGTTTAATA----ACGTATATCTCCCATATACATAGGAGATACCCAGGAAAACCGAGTAACT CCT--GAATGACTCAAATCACTATTTT----------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------AAATACCATTTCCAGCTAAAGACAACAG-AAAATG TTATGGGA--GAGGAGTAGGCCAGTTATGGGAGGTCACTAGGACAAGCACAGTAAACAAGG------TTGTTATGCAGAT TTAA-----TGACTTCTCCTTTGACAACAGTT-ATAGAGATTTAGAGGCATCCTTTTCTTCCAGGTGCAGAGAGGGAGTC ACCCTT-CGAATAGAGATTTCCCTTATAAATGTACATTTCCTTTACCAAAGGGTAACTTCCACTCAGTTTT-GGAA---- CTTTTCCTATGTCTGCTGTTTCTTAAAAATAATCAGCCTAAAATAAACTTTATGCCAAAGAGGCATATTTT-GGGGTGAC AG-TTTTGCT-CCCTTCA---GCCT---CCTACACTGATGCTGAATTTTAAACCTAAGACTATTTTATAAATTATTTT >Manis_pentadactyla GTTGTGTGGAATCATTTTTAATAAAATCGTAAACTTGACAAAAA-----TATTTTA---GCAT---TGCAGGGGAGGAAA AATAATTTTCCCTCTACCCTTTTAGGTTCC--TAGCTGAGACACCCCTCCAACT----------AGAAGATAGATTAACA GGAGAAAAGCAG-----AAGTTTAATAAC--ATGTAAACCTCCTGTATCCTTGGGAGAGACCCAGGAAAACTGAGTGACT CCCTGAAGTGGCCCATGCCATCCCCTT----------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------AAATTCCATCTCTAGCTAAAGGCAAAAGAAAGATA CTGGGGCCAGTTGGAGGTGGCCAGTTAGGGAAGGCGACCAGGAAAAGCACAGTAAATGAGGATATGCTTGTTACACAGAT CTAAGTCCCTGCCTTGGCCATTAAT--GAGTTCCTAGAGT--TTCAGTCATCTTCCTCCTC------TACAGAGTGAGAC GCCCTTATCCATGCAGATTTCCCTTATCAATGTAAATTTATCTTCCAAGAGGGTAACTTCTCCTTGGTTTGCAGAG---- CTTTTCCCA--TCTGCTGTTTCTTAAAAATAATCAGCCTAAAATAATCCTTATACCAAAGAGCCATATTTT-GAGGTGAC ATATTCCACTTTCCTTCA---GCCT---CCTACACTGCTGCTGAATTCTAAACCTAAGTCCATTTTATAAATTATTTT >Myotis_myotis GTGATGTGAAATCA-CCT---CAGAATTGGAAACATGACAAAAA-----TATTTTA---ATTT---TCTAGGGGAGG-AA AATAATTTTCACTCTACCCTTCTTGGTTTT--TAACTGAGATACCCCCTGTAAT----------AAAAGACAAATAAAGA GGAGAAAAATAAAAGGGAAGTTTAATA-------------CCATGTGTACCTGGAAGATACCCAGGAAAATTGAATAAAT CCCCTAAATAGCCCAAGCCGTCACCTT----------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------AAATACTATTTCCAGGTAAAGACAA----AAGATG TTGGAGGT--GGAAGGGAGGTCAGTTATGGGAGACTACCAGGAAGAGCATGATAAACAAGGGCGTGTTTGTTATGCAAAT TTAAGTTCTTGTTTTCTCCATTGATGAGAGTTTCTAGAGA--TTTAGTAATTCTTCTCTTTCTGGTACAGTGAGAGAG-- ------ACAAATGGAGATTTTCCTTGCAAATGTAAATGTCTGTTATAAAAGGGAAACTTCTACTTGGTTTTCAGAGTTAC ATATTCCTATGTCTGAT-TTCCTTAAAACTAATTAGCTTAAAATAATCCTTATCCCAAACAGGCCTATTTT-AGGGTAAC AAATTCTGCCCCTCTTTA---GCCC---CCTAAACCATTGGTGAACTTTAAACATAAGTCCACTTTATAAATTATTTT >Rousettus_aegyptiacus GTGGCATGAAATCAACTT----AAAATTGGAAACTTGCTGAAAA-----TATTTTA---GTCA---CGTAGGGGAGG-AA AATAGTTTTCCCTCTACCCTTCTAGACTCT--TGACTGAGATGCCCTCTGAAAT--------------AAAAGATTAACA GGAGAAAAACAAACAG-AAGTTTAATAAC--ATGTGTACCTCTTATATACATGGGAGAGACCCAGGAAAACTGAATACTT CCCC-AAATAGCCCAAACCATCACCTTTAAAACTATCTCCAAAAAGCAACCCTCATACACTGCAGGTGGGACTGCAAATT GGTACAGCCACTATGGAAAACAGTATGGAGGTTCCTCAAAAATCTATTAATCTACCATATCATCCAGCAATCCTTCTATT GGGTATTTACCCCAAACACTTGAAAACCCATATCCAAAAAGATATTTGCACACCAATGTTTATAGCAGCATTATTCACAG TGGCCAGGACATGGAAACAACCAAAGTACCCTATGACAGATGATTGGCTAAAGAAGCTGTAGTACATATATACAATGGAA TATTACTCGGCCACAAGAAGAGATGAAATACTGCCATTTGTGACAACACGGATGGACCTCAAGAGAATCATGCTAAGTAA AGTAAGCCAGACAGAAAAAGTTGAAAATCATATGATATCATTTCTATGTGGGATATAAACTTAAAAGCAACAAATGAACA GGACAAACAAACAGAGACTCATGGACATGGACAATAGAATAGTGATTACCAGAAGGCAGGGGGTGGGGGAAGAGAGAGTA AGTAGATAGTTAAAGGAGGTCAAATATAAGCAGGTTGAGGGAGGGTGAAGTGGATAAAGGGGATCAAATATATGGCAGCT GAAGGAAACTGGACTTTGGGTGGTAAACACAAAATAGAATATACAGATGTCAAATGATAATGTACACCTGAAAATTATGT AATTGTATTAACCAATGTTACCCCCAATAAACTTAATTAAAAAAAAAAAACTATCTCCATCTAAAAACAAAAG-AATATG TTGAGGGTTTGGTGGGGAGGCTAATTAGGGGAGGTTACCAGGAAAAGCACAGTAAACAAGATCATGGTTATTATGCAAAT TTAAGTTCTTGCTTTCTCCATTGATAAGAGTTCTAACAGA--TATAGTCATCCTTCTCTTCCTGATACAGAGAGGAAG-- ------ACAAACGGAGATTTCCCTTATAAATGTAAATGTTTCTTATAAAAAGGTAACTTCTGCTCAGTTTTCAGAA---C TTTTTCTTATGTCTGATGTTCCCTAAAAATAATTAGCCTAAA-TAATCCTTATGCCAAACAGACATATTTT--GGGTGAC AAATTCCACTCTCCTTCA---GCCT---CCTACACCAATGTCAATTTCTAAACCT--GTCTATTTTATAAATTATTTT >Sus_scrofa GTGATGCGAATTCC-CCTAAATAAAATTGGAAATTTGACAAAATTCTGTTATAATA------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------GCCA---CTTACAGCAATGCTGAGTTCTAAACCTAAGTCCATTTTGTAAATTACTTT >Bos_taurus GTGATGTGAAATCC-TCTAAATAAAGTTGGAAATTTGACAAAAA-----CATATTG------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------GCCT---CTTACAGCAATGCTGAGTTCTAAACCTAAGTCCATTTTGTAAATTATTTA >Equus_caballus GTGGTGTGAAATCA-CCTTAATAAAATTTGCAGCTTGACACAAA-----TAGCTTA------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------GTCT---CTCACACCAGTGCTGAAATCTAAACGTAGGTCCGTTTTGTACGTTATCTT >Ceratotherium_simum GTGGTGTGAAATCA-CCTTAACAAAATTGGAAGCTTGACAAAAA-----AGCCTTA------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------GTCT---CCTACACCAATGGTGAATTCTAAACCTGAGTCCATTGTGTAAGCTTTTTT >Condylura_cristata GTGGTTTAAAATCA-CTCTACTAAAATAGAAAATACAGCAAAAA-----TATGCT------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------GCCG---TCTATACCAATGCTGACTTATACCCATAAGTCTATTTTGTAAATTGTTTT >Erinaceus_europaeus GTGGCATGAAATCG-CTTTAATATTGTAAAATACATAATAGGAA-----TATTTTA------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------GTCT---T--GCA---ATGCTGACTTCTCAACTGAGTCCCATTTCTGAAACTGCTTT >Homo_sapiens GTGGTGTAAAATTA-CCTTATTAAAATCAGAAACTCTATA-AAA-----TATTTTA------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------GCCT---TTTACACCAATGCTAAATTCTAAACCTAATTTCATGTTGTAAATTATTTT Dog6_LTR >MER57LA ------------------------------------------------------------------TGTGTTAAAAGA-T AAACTGAGGCATATTAAAAATTTTAAGAGTTTATTTGAGCAAAAAT-CGATTCAAAT-CAGGCAGCACCAAACCAGGAAG TGGTTAGGAGCGCTCCACCGACAGGAGCTAGGGGAAAGACTTTTATAGAGAAGAGGCAGA-AGCAAAGCAAGGAAATTAT TTGATTGGCTATAGCTTAAGCAGTTGCCTTATTTGGGAAAGCCTAGTTGGCTGTTTGTGATTGGTTGTCCTTAG-GTTTT GA-TTTCTTAACCTTGAGGCATTTACAGGCTTAGGTTTTGGTTTGCTTACGTAGGCTGCTAAGGCATTAGAACCACCTCA GTCTAATGGCCTCCTTGTTTAATTAATTTAACA----------------------------------------------- ------------------ >Canis_familiaris CTTAT--TAATATCAAATTCTTTGCCAAGAGTGGGGCT----TTGGTTAGTGATTT---AGGG-----TGTTAAGAGA-T AAACTGAGGAGTATTAAAAATTTTAAGAGTTTATTTGAGCAAAAATACAATTCTGAT-GGGGCAGCACCAAACT-GGAAG TGGTTATGAGCACTTGGCGGACAGGAACCAGAGGAGAGCCTTACATAGGGAATGTGCAGA-AGCAAAGAAAGGAAATTAT TTG-TTGGCTATAGTTC---------------------AAAGCCTATTGGCTATATAAGATTGGTTGTTCTTAGTGTTTT GATTTTTGTAATCTTGAAGCATTTACCAGCTTAGACTTTGGTTTGTTTATGTAGGCCTTCAAAGCACTAGAGCCACCTCA GACTAATGACCTCTTTATTTAATTAAATA------AAGG---GCATATAGAATTTTAATAGAGGCCACAATGGATGGGAA AGAAAACGAGGAAAATAA >Felis_catus CATAT--TGATATCAAGTTCTTTGCCAAGAGTACGGCT----CTTGTTGGTGAGTT---AAGG-----TGTTAAGAGA-T AAACTGAGGCGTGTTAAAAATTTTAAGAGTTTATTTGAGCAAAAAA-CAATTCTAATCGGGGCACTGCCAAACT-GGAAG TGGTTAGGAGCAGTTGGCCAAC----------------------ACAGGGAATGTGCAGA-AGCAAAGAGAGGAGAGTAT TTAATTAGCTATAGCCA-----------------------------------------------TTGTTCTCCGTGTTTT GA-TTTTGTAATCTTGAAGCATTTACCGGCTTAGATTTCAGTTTGTTTACATAGACCTTCAAAGCGTTAGAGCCACCATA GACTAATGGTCTCCTTGCTTAATTAAATA------AAGG---GCATATAGAATTTTGATACAGGCCACAATGGATGGGAA AGGAAACAAGGAGGAAAA >Manis_pentadactyla TATATACTAATATTGAATTCTTTGTTAAGAGTTGGGCT----TTGGCTGGTTAGTT---AAGG-----TGTTAAAAGA-T AAATGGAGGCATATTAAAAATTTT--GAGTTTATTCGAACAAAAAG-CAATTTTACT-CACTCAGGGCTAAACC-GGAAG TGGTAAGAAATGCTCTGCCTGCAGGAACCAGGGGAGAGA--TATATAGCAAAAGTACAGA-AGCAAAGAAAGG--ATTAT TTGATTGGCTATAGCTT---------------------AAACCCTGTTGGC--TCTGTCTTTGGATGTCTTTAGTATTCT GA-TTTTGTAAATTTGAGGCATTTACCAGATTAGATTTTGGCTTGTTTACATAGGCCTCCATGGCTTTACAGCCACCTCA GTCTAATGGCTTCCTTGCTTAATTAAGCA------AAAG---GCATACAGAATTTTAATAGAGGTCATGATGAATGGGGA AGAAAACAAGGAAGAAAA >Condylura_cristata GATAT--TTATAGCTAACTCTTGGCCAAGAGTAAGGCT----TTGGTGGGTGATGT---ATGG-----TGCTAAGAGACT AAATTGAGGCATAGGAACTATTTT--GAGTTTATTTGAGCAAAAAT-TGATTCTCAT-GGGGGAGCGCCCAACT-GAAAG CAATTAGGAGC------------------CAAGGAAAGGGGTATATGGAGGCGACACAGATAGTTAAGAAAGGAAATA-- TTGATTGGCTATAGCTT---------------------AAACC-------CTGTTTGTGATTGGTTGTCTTTAATGCTTT GA-TTTTGCACCCTGGAGATATTTCCAGACTTAGATTTTGGTTTGCCTG-ATAGGCCCCT-TGGCATTAGAGACACCTCA GCCTAATGGCCTCCTCATTTAAATAATTCAAC---AAAG---GCATATAGAATTTTAATAGAGGTCACAATGGATGGGGA AGAGAACCAGAAGGAAAG >Solenodon_paradoxus GCTAT--TAATATCAAATTCTTTGCAAATTGTAAGACT----TTCGTTGGTGATTT---AGGG-----TGTTAAAAGC-T AAACAAAGGCTTACAAAATTTTTT--AAGTTTATTTGAGCCAAAAT-CTGTTCTAATAG----------------GGCAG TGGTTTGTAGCCTCCTGGAGGTCAGGAGTCCAGGGAAGACTTATAGGGAGAAAATGCACA-AACAAAGAAGGGAAATGAC TCAATTGGCTATAGCTG--------------------GAAGTC----TGGTTGTCTGTGATGGGTT-CTCTCAGCATTTA GATTTCCCTGGAC--GAGGCTTGCAGAGG-TTAGAGTTTGGCTTGCTT--GTAGCCTCCTGTGGCATGAGGGCCATTTGG CTCTCAGGGCCTCCTTGTTTCATCACTTTAAC---AAAG---GCATGTAG-ATTTCAACAGAGGCCACAATGAATGGGGA AGAAACCTAG-----AAG >Sus_scrofa CGTAC--TGATATTCAATTCTTTGCCAACAGTAGGGCT----TTGATTGTTGATTT------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------CAGG---GGATATAGAATTTTAATAGGGGCCACAATTGATGGAGA AGAAAATGAGGAGGAAAG >Tursiops_truncatus CATAT--TGATATCAAATTCTTTGCCAAGAGAAGGGCTTTGGTTGGTTGGTGATTT------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------AAGG---GTATACAGAATTTTAGTGGGGGCCACAAAGGATAG--- AGAACGCAAGGAGGAAAG >Equus_caballus CATAT--TGATATCCACTTCTTTGCCAAGAGTAGGGCT----ATGGTTGGTGATTT------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------CGGG---GCGTATAGAATTTTAGTGGAGGACGCGATGGATGGGGA AGAAAACAAGGAGGAAAG >Tapirus_indicus CCTGT--TGGTATCAAATTCTTTGCCAAGTGTATG-CT----TTGGTTGGTGGCTT------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------AAAG---GCATGTAGAATTGTAGTGCGGGCCACAATGGATGGGGA AGAAAATAAGGAGGAAAG >Myotis_myotis TATAC--------CAACTTCTTTGCTAAGAATAGGGCT----TTGGCTGGTGATCG------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------AAGG---GCACACAGAACTTTAGCGGGGGTTGCAATGGCTGGGAA AA-----CAGGAGGAGAA >Rousettus_aegyptiacus TATGT--TGATAACAAATTCCTTGCCAAGAGCAGGGCA----CTGGTGGATGATTT------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------AAGG---GCAGATGGAATTTTAGTGGGGACCGCAATGGATAGGGG GTAGAATCGGAAGGGAAG >Homo_sapiens AATAT--TGATATGACGTTTTTTGCCAAGAGCAGAACT----TTGGTTGGTGATTT------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------GAGC---GCAGGCAGAATTTAAATTCAGGCTACAATGGATGGGGA GGAAAATGAGGAAGAAAG Dog7_LTR >MER57LA ---------------------------------------------------------------------------TGTTA AATTAATTAAACAAGGAGGCCATTAGACTGAGGTGGTTCTAATGCCTTAGCAGCCTACGTAAGCAAACCAAAACCTAAGC CTGTAAATGCCTCAAGGTTAAGAAATCAAAA-CCT-AAGGACAACCAATCACAAACAGCCAACTAGGCTTTCCCAAATAA GGCAACTGCTTAAGCTATAGCCAATCAAATAA-TTTCCTTGCTTTGCTTCTGCCTCTTCTCTATAAAAGTCTTTCCCCTA GCTCCTGTCGGTGGAGCGCTCCTAACCACTTCCTGGTTTGGTGCTGCCTGATTTGAATCGATTTTTGCTCAAATAAACTC TTAA-AATTTTTAA-TAT-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------GCCTCAGTTTATCTTTTAACACA--------------------------------------------- -------------------------- >Canis_familiaris GCTCTGTGCAGAGTTGCTAATAAAACTGCAGCACTGATTG------GGGTGGT-------C--TT---CATC---TGTTA GATGAATTAAACAAGGAGGCCATCACACTGAGGTGGCTCGAAGGCCAT-GGGGCCCATGTAAGCAAACCCAAACCTAAGC CTGTAAGTGCCTCAAGGTCATACCATCAACA-CGTGAAGGACAACCATCCACAAACAGCCAACTAGGCT----------- ---------TTCAGCGAGAACCGGAC-AATAACTTTCCTTACTCTGCTTCCACCTTTTTTCTAGAAAAGTCTCGGCCTGA GCTTGGGTCGGTGGAATGCGCCTCACCGC-TTCTGGTGTGGTGTGGTCTGATGTGAGTAGAGTTTTTCTCAAAGAAACCC TTAAGAAATGTTAA-TAT-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------GCCTCAGTTTATCTTTCAAGGCA----TTT-----AAAAAACAAGGCCTCTTCTAGAAGGTGGCACGA GGCCCA------CGGCCCTTTCCCTG >Felis_catus GCTCTGTGCACAGTTGCTAAGAAAACGGCACCGCAGACTG------GGGTGGT-------C-TTT---CGTT---T-TTA AATTAATTCAGCAAGAAGGCCGTCACACTGAGGTGGTTCTAATGCCACGGACACCTTTGTAAGCAAACCCAAACCTAAGC CTGCAAGTGCCTCAAGGTTACAACATCAACG-CATCAAGGACAACCACTCACAAACAGCCAGCTAGGCT----------- ---------CTAAGCTATAGCCGGCC-AATAA-TTTCCTTACTTTGCTTCCACCTTTTCTCTAGAAAAGTC-TCAGCCGA GTGCCTGCCCGTGGAACGCTCCTAAACAC-TCCCAGTTTGGCACGGTCTGATAGGAATAGAATTTTGCTCAAATAAA--C TTAC-AGTTTTTAAATATGCCTCAGTTTATCTTTAAATTTTTTTTAATGTTTATTTTATCTTTGAGAGAGAGAGAGACAC GGAGTGCAAGTGGGGGAGAGGCAGAGAGAGAGGGAAACACAGAATCCGAAGCAGGCCCCAGGCGCTGAGCTGTCAGCACA GAACCTGACTCGGGGCTCGAACTCATGAACCACGAGATCATGTCCTGGGCCAAAGTCAGACGCTTAACTGGCTGAGCCAC CCAGGCGCCCCAACCTCAGTTTATCTTTTAA--TG---GGTT---CAAAGCAACAGGGCCTCTCCTGGGAGATGGCATGA GGCACA-----GAACCCTTTGCCCTG >Manis_pentadactyla GCTCCACAGGCAGCTGCTCAGAAAAC-----CGCCGATTG------GAGTGGC-------C-TTT---TGTT---TGTTA AATTAATTAAGCAAAGGGTCCATTAGACT--GACGGCTCTAATGCC-CAATAGCCTCCCTCAGCAAACCCAAATCTAAGC CTATGAATACCTCAAGGTTCTGAAATCAAAGCCCCTAAGTACGGCCNNNNNNNNNNNNNNNNNNNNNNN----------- ---------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNN-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------NNNNNNNNNNNNNNNNNNNNNNN---NNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNN >Myotis_myotis CTTCCAAAGGAAGTTGCTAAGAAAATGGCAGTGCTGATTG------GTATTGT-------CTTTT---TATT---TGTTA AACTAATTAAACAAGAAGGCCATTAGAGTGAGATGGCTGCAATGCTTTGAGGGCCTACATAGGCAAACCAAAATCTAAGC CTGTAA------CAAGATTACAAAATCAAAA-CCCCAAGGATAACCCATCACAAATAGCCAACCAGGCT----------- ---------TTAAGCTATAGCAAGTT-AATAA-TTTTCTTACTTTGCTTCTGCCTTTTCTCTGTAGAAGTC-TCTTCCAA GCTCTGGTTGGTGAAGCACTTCTATCCAC-TTCCAGTTTGGTGCTGCCTGATCTAACTTTATTTTTTCTTACATGAACTC TTAA-CATTTTTAA-TAT-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------GCCTTGGTTTATCTTTTAA--CA---TGTT---C-AAACCACAAGGCCTCTCCTAGGAAGTGGCATGA GGCAAG-----TTGCCCTTTTCCCTG >Rousettus_aegyptiacus GCTCTAAGGAAAGCTGCTAAGAAAACTGCAGTGCTGATTG------GGATGG--------CTTTT---TATT---TGTTA AACTAATCAAACGAGGAGCCCACTAGAAT-AGGTAGCTCTAATGCTGTCAGGGTGTACGTGAGCAAGCCAAAATCCAAGC CTGCAAATGCCTCAAGGTTATGAAATTAAAA-CCCTAAAGGCTACCAATAGCAAATAGCCTACTAGGCT----------- ---------TTAAGCTACAACCAGTC-AATCA-TTTCCTTACTTTGCTTCTGCTTTTTCTCTGTAAAAGTC-TCTCCCCA GCTCCTGTTGGTAGAGCACTCCTAACCAG-TTCTGATTCGGTGCTGCCAGGTTCAAACTTATTTTTGCTAAAATGCTTTC TTAA-AATTTTCAG-TAT-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------GCCTTAGTTTATCTTTTAA--AA---TGTT---C-AAATGACAAGGCCTCTCCTAGGAGGTGGCATGA GGCACA-----CTGCTCTTTTCCCTG >Sus_scrofa GCTCCGTGGAAGGGTGCTGGGAAAACGGCAGTGCTGATGG------GGGCGGC-------C-TCT--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------GGTT---C-AGATAATAAGGCCTCTCTTAGG-GGTGGCACGA GGCACA------CCTGCCATCGCCTG >Bos_taurus GCTCCGTGGAGTGTTGCTGAGAAAATGGTGGGGCAGCTTGGTGGCAGGGTGGTGGGGGAGC-TTT--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------TGTT---C-AAATAACAAGGCCTGTCTTAGAAGGTGGCTCAA GGCCCA------CTGGCCTTTCTCCG >Equus_caballus GCTCCGTGGAAAGTTGCTAAGAAAACTGCAGTGCTGGTTG------GGGTGGC-------C-TTT--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------CGTG---C-AGATAAAAAGGCCTCTCCCAGGATGTGTCATGA GGCCCACCTCCTGGCCCCTTTCCCTC >Ceratotherium_simum GCTCCGTGGAAAGTTGCTAAGAAAACTGCAGTGCTGG-TG------GGGTGGC-------C-TTT--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------CCTT---G-AAATAACAAGGCCTCTCCTAGTAGGTGGCATGA AGCACA---CCTGGCCCCTTTCCCTG >Condylura_cristata GGCCGGTGGAAAGCTGCTAAGGACTCTGCAGAGTC-CTTG------GGGTGGG-------C-TTT--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------GTT---C-ACCTAGCAAGGCCTCT-GTAGGAGGTGGCAAGA GGCACA-----TTGTCCCTTTCCTTG >Erinaceus_europaeus GCTCAATGGAAAGTGAATAAGAAAACTGCAGTAATGATTG------AGGTGGG-------C-TTT--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------GCTT---C-AAAGAGCA------CTCCTAGGAGCTGGCTTGA GGCATG------------CTCCCCTA >Homo_sapiens GCTCTGTGGAAGGCCACTAAGAAAACTGCCATGCAGTTCG------GGGTGGC-------C-TTA--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------AATT---C-AAATAACAAAGCCTATCTCGGGAGGTGGCGTGA GGCATG----------------CCTG Dog8_LTR >MER34C_CF ----------------------------------------------------------------------TGTTG---AG GAGAAAAAAATTTTCCTCTACCCTT-CTAGGTTCTTCTGGCTGGT--CTAAGAATCAAATTGA----CATAAGACAGATT AACAGGAGAAAAACAAACAAAAGTTTAATAACATATGTATACCTCCTGTATACATGGGAGAG------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------ACCCAGGAAAAC-TGAGTAACTCCCCG-AAATGGCCCAAGCCATCACCTTAAATA CC--ATCTCCAGCTAAAG--ACAAAAAAGATG-TT---------GGGGGTGGGGAGTCAGT-----TATGGGAGG----- TTACCAGG-AAAAGCACAGTAAACAAGGGTAAGGTTGTTATGCAGATTTAAGTC-CTTGCCTTCTCCATTGATAAGAGTT TCTAGAGATTTAGAGTCATCCTCCTCTTCCTGGTACAGAGAGGGAGACACCCTTACAAATGGAGATTTCCCTTATAAATG TAAATGTCTCTTACAAAAGGGTAACTTCTACT-CGGTTTTCAGAGCTTCTCCTGTGTCTGCAGTTTCT---TAAAAATAA TCAGCCTAAAATAATCCTTATGCCAAAGAGGCATATTTTGGGGTGGCAAATTCTGCTCCCCTTCA--------------- -------------------------------------------------------------- >Canis_familiaris TTATCTTACCCGTCCAAAACCTAGCCATCTTTGAAATCAGCCTGG---------CTCG--------T---TGCAGGGGAG GAAAAAGAATTTTCCCTCTGCCCTT-CTTGGTTCT--TGACTGA-------GAGCTCCTGTAA----TAAGAGATAGATG AGCAGGAGAA----AAACAGAAGTTGAGTAAC--AGGTACACCTGCT---TCCGTGAGAGCG------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------ATCCAGGAGAACTTGAGGAACTCCCTGAAAATGGCCCAAGCCGTCACCTTAAATA TG--TTCTCCAGCTACTGACACAAGAAAGATGATT---------GGGGCTGGGAG------------------------- ---------AGAAGACCTGGAAAC-AGGATAAGATTGTTATGCAGATTTAAGTTGGGCTTTGTCTCC--CGATAAGAGTT TCTTGTGATTTAGTGTCACCCTCCTCTTCCTGGTGCTGAGAG-GAGACACCCTTTCAAGTGGAGACTTACCTTGTAAATG TAAATTTCCCTTC------AGTAACTTCTACG-TGGTTTTCAGAGCTTTTCCCCTGCTTGCTGTTTTTTTTTAAAAATAA TGAGATCAAGATAATCCTTATGCCAGAGAGGCAGATTTGGGGGTTGCAGATCCTGCTCCCC-------TCCT---CAT-- --TAGCCAGGTCTCACAAATTAGGGAGTGAGTTCCAGCCCTGGACAG----GGTTG-CAGTT >Felis_catus TTATTTTACCCTTTCAAAACCCATCCATCCTTGAGATCAGCCTGG---------CTGA--------T---TGTAGGGGAG GAAAAATAATTTTCCCCCTGCCCTT-CATGGTTCT--TGGCTGA-------GACCTCCTGTAA----TAAAAGACAGATT AACAGGAGAAAAACAAAC--AAGTTTAGTAAC--ATGTCCACCTCCTGCATGCATGAGAG-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------ATCCAGGAAAACTTGAGGAACTTCACG-AAATGGCCCATGCCATCACC------- ----TTTTTCAGCTTAAGACACAAGAAAGATGGTT---------GGGGCTGGGGTGTGTGTGTGTGTGGGGGGGGGGGGT TAGGTGGG-GAAAGACCTGGAAAC-AGGGTAAGGTTGTTATGCAGGTTTAAGTT----TGTGTCTCCTTTGATAAGAATA TCTTGTGATTTAGTGTCACCTTTATCTTCCTGGTGCTGAGAG-CAAACACCCTTCCAAATGGAGATTTCCCTCGTAAATG TAAATTTCCCTTC------GGTAACTTCTATTCCGGTTTTCAGCTCTTCTCCTGTGCCTGCTGTTTTA-AAAAAAAATAA TGAGATCAAGATAATCCTTATGCCGAAGAGGCAAGTTTCGGGGTGGCAGATTCTGCTCGGT-------CCCT---CAT-- --TAGCCAAGTCTCACAACTTAGGAGGTGAGTTCCAGCCCTGGACAG----GGTTG-CACTT >Manis_pentadactyla TTATTTTACCCTTCCAAAACCCATCCATC-TTGAGATCAGTGTGGCTGTCTTATCTGA-----TCCT---TGTAGGGGAT GAAAAATGATTTTCCCTCTGCCCTT-TTAGGTTCT--TGGCTGATACCCCCACCCCCTTGTAA----TATA----AGATT AACAAGAGAA----AAATGGAAGTTTAATAAC--ATGTATACCTGCCATATACATGGGAGAG------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------ACCCAGGAAAAC-TGCATAACCCTCTG-AAATGGCCCAAGCCATTACCTTAAGTA CC--TTCTTCAGCTAAAGACACAAGAAAGAT--TT---------GGGGGTGGGGGTGGCGA-----TGTGGGGGTATCAC TTGCCAGGAAAAAGCCTGGTAAGCAAGGGTAAGGCTGTTAAGCAGATTTAAGTTGGGTCCCTTCTCCACTGATAAGAATA TCTTGTGATTTAGAGTCACCCTTCTCTTTCTGCTGCTGAGAG----ACATACTTACAAATGGAGATTTCCCTTATAA--- ----------------TAGGGTAACTTCT----CAGTGTTCAGAGCTCCTCCTGTGACTGCTCTTTTT---AAAAAGTAA CTAGCTCACAATAATCCTTCTGCC--AGAGACATATTTTGGGGTGGCATGTTCTGCTCCCTGTCA---CTCT---CAT-- --CAGTCAAGACTGACCAATGAGGAATCAAGCTCTAACCCTGGACAG----GGCTG-CACCT >Condylura_cristata TTTTCTTACTCTCTCAAAGCTCATCCTTC----AGATCAGCTT-----TCTTATCTGA-----CTTT---CGTAGGAGTG GAAAAATAACTTTCTCTTTACCTTT-TTAGGTTAA--TGGTTTAC------ATACCCATGCAA----TGAAAGACAGATA AACAGGAGAAAAACAAACCAAAGTTCAATAATGTGTGTACTGCTGGTACGT----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------ACCCTGGAAAAC-TGAGTAACTCCCCG-CAGTGGGCCAATACTTCACCTTAAATA CCTTTTTTCCATCTAGAGATCTACCAAAGATG-TT---------GAGGCTGGGGAGGGT-------TACGGG-------- ---------GAAAGCACCGCAAAGGAGGGCTTGGTGGTTCTGCCGGCTTGAGTC-CCCATCTTCTCCATCGATAAGAGTT TC--ATGATGTA--GTCTTCCTTCTCTT-CTGTTACAGAGAA---CACACCCTTACAATGGGAGATTTCTCTTATAA--- ---ATATCTTTTATCAAAGTATGAGCTTAACT-CCATTTTCAGAGGTTTTCCTGTGCCTGCTCTTATT---TAAAAACAA CCAGCTTAAGAGACTCCTTATGCCAAAGAGGCATATTTTGAAGTCATGTGTAGCGCCCCCTCT-A---CTCT---CATTA GCTAGCTAATTCTTACAAATTAGGAAACAAGTCCCAGCCTCAGGTATGTACGGTTG-CACCT >Solenodon_paradoxus TTATCTTACCCTTTCAAAACTCATCCACTTTTGAGTTT----TGGTTGTCTTATCTGA-----CTCT---TGTTGGGGAG GAAAAATAAATTTTCCCTCATTTCTACTTGATTCT--TGGCTTAG------ACCCCGCTCCAGTTTCTTACAGGTAGGTT AATAGGAGAAAAACAAACAGAAATTTAATAACACATATACCTTTTGTATACATGGTGATAACTGGAATGCAGTAAGCCCA GTCATTATGAATTTAAGTTTATCAGCTTGAGGATTTTAATCTGGACATCAGTAGACTGCCCACCACTGCAATGAGAGTTG AACTTTTATGCATTTTCTCTGGGTTGAGATACAGGCAAAGAAAGACAGTCACTCTCAGTGTGAATAAAGGCCCTTAAGTA ATCCTAAGCAGTCTGGTTTCTGTCTTTGTCACGTTAGATGTTAGGTCCCTCCAACTCAGTGGCTCTGGGATATTATCTGG TGATCAGCAGAGGCAAGCACAGGATGATTAAAATTTATCTAAACTCAGAGGAATGTCATGGGAATCTTAGGGAGTACTCA AAAGCTTCTCTCTGATAGTTCCTATCTGGCAGATGGGGTGAGATGCGCCTGCTTAATCAAGCCAATGCATTCTTCCATGG TTTTTCCATAGAACTAGGCCAGCTTGTTCTGACTTCATCCTCTGCAAGTTCTTCTGGACCAGGCAGAGGGGGTCCCAGGA GTAAATTTCGTTTGCAGTAGGAAATGCAAAGAAAAACATGAGTAACTCCTCG-AAAAGGGCCAAGTCCTCATCTTAAATA CCTTCTTT--AGTGAAAGGCATG--GAGGGTG-TTGGATAATGGGAGGTTATGGGAGGC------TACCTGG-------- ---------AAAAGCACAGTAA----------GGTCGGCCTGCAGAAGTAAGT--CCTGTCTTCACCATTGAGTTGAGTT TCTTGTGATTTTGAATCTTCCTTCTCTTCCTGTGCTTAAAGAGAG-ATAGCCTCACCAAAGGAGTTTTCCTTTGTGA--- ATGTAAATGTCTTGCAAAATGGTAAATTCTCC-TCGGTTTCAGAGCTT---CTGTGTCTGCTACCACT---TAAAAATAA CAAGCTCGAGATCATCCTC-TGACAGAGAGGCATAATTTGGGCTGGCATATTCCAGT-CCTCTGA---CTCT---TAT-- --TAGCCTAGTCTTAGAAACTAGGAAGCACGTCCCAGAGCTGGATAG----CATTG-CACTT >Sus_scrofa TTATTTTATCCTTTCAGAACCCATCCATC-TTGAGATCAGCCT------------TGA-----CCTT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------TAG-- --CAGCCAACCCTTTCAAATTCGGAAGCCAGTCTCAGCCCTGGACAA----GGTTG-CCTCT >Bos_taurus TTA-----TCTTTCCAAAACCCATCCATC-TTGAGATCAGCCTGGCTGTCTTATCTGA-----CTCT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------TAT-- --CAGCCA-GCCTCCTAAATTAGGAAGCAGGTCCCAGGCCTGGACAG----GGTTGCCCCCT >Equus_caballus TTCTTTCACCCTTTAAAACTCCGTCCGTC---------------------TTA-CTGA-----CTC-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------------AT-- --CAGCCGAGTC--ACTGATGAGGAGGCCAGT-----CCCCTGACAG----GGCCG-CCCGT >Tapirus_indicus TTATCTTACCCTTTAAAAACCCATCCATC---------------------TTACTTGC-----CTCT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------CTT-- --CCGCCAAGTCTCACAAATTAGGAAGCAAGTCCCAGCCCCGGACAG----GGTTG-CCCCT >Myotis_myotis TTATTTCACCCTTTCAGAACCCATTCATC-CTGAGATCAGCCTGGCGGTCTTATCTGA-----CTC-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------------AT-- --CAGCCAAGTCTCACAAATGAGGA-----------------------------TGACCCTT >Rousettus_aegyptiacus TTATTCTGCCCTTTCAAAACCCATGCATC-ATGAGATCAGCCTGGCTGTCTTATCAGA-----CTCT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------CAT-- --TAGCCAAGTCTCACAAATTAGGAAGCAAGTCCCAGCCCTGTACAG----GGTGG-CCCCG >Homo_sapiens ATAGCTTACCCTTTCAAAACCCATCC----------------TGGCTGTCTTATTTGA---TTCTCT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------TAT-- --CAGCCAAGTCTTACAAATCAAGAAGCAAGCCTCAGCCCCAGATAG----GGTTG-CACCT Dog9_LTR >MER34A_CF ------------------------------------------------------------------------TGTAGGGG AGGCAAAATTTTACCTCTACCCTCTTAGGGTTTTTCAGCTGGGCCTGAGAATTAAATTGACATAAGACAGATTAACAGGA GAAAAGCATACAAATTTATATAAGTTTTACGTGACATGGGAGCCCTCATAAGGAAATGAAGACCCAAAGAAGTGGCAAAA CCTAAATGCTTTTATACTAGGTTGAACAAAGAGAGGCAA-----TTGTGGAAAAGTAACTAAAATATATGGGG---AGGC TAAAGGAAGATAAGAGTTATT------TTAACAAGGTCTGTTTGTACAGAATTCTCTCGGCCTCGACTCCCC----GTCT CTGGTGATAAGAATG-TTTCTTTCCTCCTGGTATAGGGAGGACATCTTTCACATGGGAGTTTTATCTCCTGCTTTCAGGA AGAAAAGGGAAGGTCAGAGC---GNCCTTCTTGCACCTGCTGTTTTTCAAGTGCCTTTAGCTCAAAATAATCCTTATGCC AAAGTGGCATATTTTGGGGTGGCATATTCTGCCACCCTTCA--------------------------------------- ---------------------------------------------------------- >Canis_familiaris TGTAGATCTGGTAATATTTATTTATATTCTTGCTTAGTTT------CTTTTCTTG------A---GGTT---TGTAGGGG TAGAAAAATT-----TCTTCCCTTCTA-AGTTCTTTGGCT-CGTCTAATAATTAAATTGGCATAAGACA--TTAACAGGA AAAAA----ACAAGTTTA---ATTTCATATAT---AT-GGAGCTC-CATAAAAATACACAACT-CAAAGAAGTGACTGTA GCAAGCAACTAT-----------------------ACAATACATTTGTGAAAAATTAAC-AAGACAAAGAGGT-TTAGGC TTGAGGTAG---TAAATTAGTGAAGAAGTAACAAGGCTTGTCTATACAGCCTTCTCA-GCCCTAAATTCCCTAACCAACT CTGGTGATAAGGATGACTTCTTCCCTCCTGATACAGGAGAGG----------------GATTTATTTCCAGCTTTCAGGG GGACAAAAGAAGGTCGGAGTCGGAGTGTTCTTATACCAACTGTTTCTTAGGTAACTTTAGTTCAAAATAATCAGTATCCT GAAGTGGCATATTTTGGGGTGACATATTCTGCTCCCCTGCA---GGTT---TGGCATATTTTGGGGTGACATATTCTGCT CCCCTGCAGGTTTGTCATCTCTGTCCCTGAAG---AACTACCATTTTGAACTTAGTCT >Felis_catus TATAGATCTGGTGATAGTTATTTATATTCTTGTTCAGAATCTTCAACTTTTCTTG------A---GGTT---TGTAGGAG CAGAACAATT-----TCTTCCCTTCTA-GTTTCTTTGCCT-TGTCTAATAATTAAATTGACATAAGACAGATTAACAGGA GTAAA----ACAAGTTTA---AATTCATACAT---ATGGGAGCTT-CCTAAAAATATGAGACTCCAAAGAAGTGACCAAA GCAGGCAACTTTTATACC---TTTTAGACAGGAAGGCAATCCATTTATGAAGAATTGAC-AAGACAAGGGGGT-TTGGGC TTAGAGTAG---TAAATTAGTGAAGAAGTAACAAGGTTTGTTTATACAGCCTTCTCAGGCCTTATATTCCCT----ATCT CTGGTGATAAGGATGCCTTCTTCCCTCCTGGTAGAGGAGGGGGAC------------------ATTTCCTACTTTCAGGG GGACAAAGGAGCATCAGAGT------GTTTTTATACCAGCTGTTTCTCGGGTAACTTTAATTCAAAATAATCCAGATGCC AAAGTAGCACATTTTGGCGAGCCA-ATTCTGCCCCCTGTCA---GGTT---TATCATCTATTC----------------- ------------------CTCTGTCCCTG------AACTACCA-TTTGCACTTGGTCT >Manis_pentadactyla TGTAGGTCTGGTAATGTTTACTTATATTCTTTTTCAGTTACTTTTGTTTTTCTTG------A---GGTT---TGTAGAAG CAGAAAATTT-----TCTTCCCTTCTG-AGTTCTTTGGCT-GGCCT---AATTAAATTGACATATGACAGATTAACAGGA GAAAA----ACAAGTTTA---ATTTTGTACAT---ACAGGAGCCC-CATAAAAATATGAGAGTCAACAGAAGTGACTAAA GCAACCAGCTTTTATACC---TTTTTGACAAGGAACCAATAAATTTGTAAAGAATTGAC-AAGACAAAAGGAT------T TTGGGGTAG---TACGTTAGTGAA---ATTGCAGGGTTTGCTTATACAGCTTTCTCA-GCCCTAAATTCCCT----ATCT GTGGTGATAAAGATGCCTTCTGCCCTCCTGGAACAAAAAGGT--ACTTTCAC----GGGATTTATTTCCTGCTTTCGGGG GGTCAGAGGAGTGTCAGAGT------GTCCTTGCAAGTGCTGTTTCTCCAGTAACTTTATTTCAAAATAATCAACATGCC AAAGTGGCATATTTTGGGGTAGTCTATTCAGCTCCCTTCCA---GGTT---TACCATCTGCTA----------------- ------------------TTCTATCCCCAGAG---AACAACCATTTTGGACTTGGCCT >Myotis_myotis TGTAGGCCTGGTAATGTTTATTTCTATTCTTATTCAGTTATTTTTGGTTTTCTTT------A---GCTT---TATAGGCG TGGAACATT------TATTTCCTTCTA-GGCCCTTTGGCT-GATCTAATAATTAAACTGGCGTAAGACAGATTTACAGGA TAAAA-CCCCCAAATTTA---ATTATTTATGT---ATGGGAGCCC-CATAAAGACATGAGGCT-CATAGAAGTGAACAAA GCAGGCAGCTTTCATAGC---TTTTAGACGAGAGAACAATCAATTTGTGAAAAATTGAC-AAGACAAAGGGGG-TTGCGC TT----CAC---TAAATTGGTGAAGAAGTAACAAGACTTGTTTATATCGTTTTCTCG-GCCCTAAATTTCTT-----ATT CCGGTGGTAAGAATG-CCTCTGCCCTTCTGATACAGGGAGGGTATCTTTCACATGGGAGATTTGTTTCCTGCTTTGGGGG GAACCAAAGAGGGTCAGAGT---GTCCTTCTTGTACTGGCTGTTTCTCAAGTAACTTTAATTC-AAATAATCAGTATGCC AACGAGGCATATTTGGGGCAGATCTGTTCTGCTCCCCTTAA---GGTT---TATCATCTATTA----------------- ------------------CTGGATCCCTGGAGCAGAAATAGCATTTTGGACTTGGACT >Rousettus_aegyptiacus TATAGGTCTGGTAATATTTATTTCTATTCTTATTCAGTTACTTTTGGTTTTCTTA------A---GGTT---TATAGGGG TGGAAAAATT-----TTTTTCCTTCTA-GGTTCTTTGGCT-GGTCTAATAATT----TGACATAAGACAGCTTAACAGGA GAAAA----ATAAATTTA---ATTTTGTACAT---ATGGGAGCCC-CATAAAAATATGAAACT-CAAAGAAGTGAGCAAA GCAGGCAGCTTTTATACA---TTTGAGACAAGGAAACAATACA-TTGTGAAAAATTGAT-AAGAGAAAAAAGGTTTAAGC TT----CAC---TGAAGTATTGAAGCAATAACAAAATTTGTTGATACACACTTTTCA-ACCCTAAATTCCCT----ATTT CTAAGGATAAGGATGTCTTCAATCCTCCTGATACAGGGAGGGTACCTTTCACATGGAAGGTTTATTTCCTGCTTTTAGGG GGACAAAGGAGTATCAGAAT---GTCATTCTTGCGCTGCCTGTTTCTCAAGTAACTTTAACTC-AAATAATTATTATGCC AAAGTGGCATATTTTGGGGTGATACATTTTGCTCCCCATCA---GGTT---TTTCATCTATTA----------------- ------------------CTCTAGCCCCAGAGGAAGACTGCCATTTTGGACTTGGTCT >Sus_scrofa TGTAGGTCTTGTAATATTTACTTTTCTTCGTACTCAGTTAACTTTGTTTTTCTGG------A---GGTT----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------TATGATCTATTA----------------- ------------------CTCTCTCCCTGGAGGAGAACTACCATTCTACACTTGGTCT >Bos_taurus TGTAGGTCTGATAATATTTACTTTTATTTGTATTTAGTTAATTTTGTTTTTCTGG------A---GTTT----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------TATGCTCTATTA----------------- ------------------CTTCCTCCTTGGAG---AACTACCATTTTGCACTTGGCCT >Equus_caballus TGTAGGTCTGGTAATATTTCTTTCTATTCTTATTTAGTTAATTTTGTTTTTCTTG------A---GGTT----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------TATCATCTATTA----------------- ------------------TTCTATCCCTGGAGGAGAACTGCCATTTTGGACTTGGTCT >Ceratotherium_simum TGTAGGTCTGGTAGTATCTCTGTCTCTTCTTATTTAGTTAATTTTTTTTTTCTTG------A---GGTT----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------TATTGTCTGTTA----------------- ------------------TTCTATCCCTGGAGGAGAACTGCCATTTTGGACTTGGTTT >Condylura_cristata TGTAGGTCTGGTGATTTTTATTTCTGTTCTTCCTCAGGTAATCTGGCTTTTGTTGTTATTTT---AGTT----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------TATCACCTGTTG----------------- ------------------CTTTATCCCCA-AGGTGAACTATTGCTTTGAACTTGGTCT >Uropsilus_gracilis TGTAGGTCTGGTGATTTTTATTTCTATTCTTATTCAATTAATTTCTGTTATTTTTTTT---A---ACTT----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------TATCAT----------------------- --------------------CTATCCCTG--GCATGACTATGGTTTTGGACTTGGTCT >Homo_sapiens TGTAGGTCTGGTAGCATTTATTTTTATTCTTACTCAGTTACTTTTGTTTTTCTTG------A---GGTT----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------TA-CTTCTATTA----------------- ------------------CTCTGTGCCCAGAGGAGAACTATCATTTTGGACTTGGGCT Dog10_LTR >MER34A ------------------------------------------------------------------------TGTAGGGG AGG-AAAAACTTTTCCTCTACCCTCTTAGGTTCAGTGSCTGGGGGCCTGCGAATTAAACTGACAAAAGACAGATTAACAG GAGAAAAGGCATACAAATTTTATTTAATATTT-TACGTGCACGGGAG-CTTCACA----GAAAAGAAGTGAAAACCCAAA GAAGCGGTTAGACCTGGGGGCTTATATACCATTTTAACAAAGG-GC----GATAAATT-GTGGAGAAGTGACAAGACAAA GGAAAAGGGGTTTGGGCTTCTAGGGGCGG------------TAAATTGTGGGAAG-----GTGACTAGGAAATATAT--- --------GGGGGAACTAATGGAAGATAAGGGTTATTTTAGTAAGGTTTGTTTATGCAGACTCATCTTGGTGTCGACTCT CCGTCTCCGG--TGATAAGAGTCGCTCTCCTCTTCCTGGTACAGGGAGGGCACCTTCACAAAGGGAAATTTATGCCCTGC TTTTAGGCAGAWAGGGGGAGGGCAGAGAGCTCTTCCTGCATCTGCTGTTTCTCAATTGCCTTCAGCTCAAAATAAT-CCT TATGCCAAAGTGGCATATTTTGGGGTGGCATATTCTGATCCCCTTCA--------------------------------- -------------------------------- >Canis_familiaris GATTTCTTCTTTAAATGAG------------TCCTAGTGCCATACTGATAACTACTACGTGA---GAGA---TGTAGGGG AGG-AAAAAGTTCTCTTTGAAGTTTTTAGGGTCC-TGGCT--GGGTCTAAAAATAAATCTGAC-AAAAACAGATTAACAA GAGAAAA-GCACACAAATTTTATTGAATTTTTACACAAACATGGGAGCCTTTATA----------AAATGAAGACTTA-- -AAGTGGCCAGAGCTGGAAACTTTCCTATCTTTTAGACAAAGAAAA----AATTAATCTGTGAATAATTGACAAGAC--- ---AAAGAAGTTTGGG---CTAGAGGTAGCCCAGCTAGAACTAAGTAGTCCTTATTTTCCTTAACTAAGACAAGAATTTC CTTAATTAAGATAAGAACAAGGAAGATAAGGGTTATTTTCAGTAGGTTTATA--TGAAGATTCCTCT--------AGTAC CTTTTTCTGGGCCTATAAGAGTATGTCTCCAAG-------------------------AAAAGGAAAATTTACTTCCCGC CTTTAGGCAGAAAAGG--------GAGAACTTT-TCTATGTTTACCACTTCTCAAGTGCCTTCAGTTCAAAATAAG-TTT TATATCAAAGAGGCATATTTTGGGGTGACATATTCTGGTCTCCTTCA---GGAA---TTATTTCCCTCTCACAGAATGTA AGCATCATCACTGGTGTCTTCCTCACATCTGC >Felis_catus GATTTCTGGTCTAAATGAG------------TTCTAGCACCATACAGATAACTACTCTGTGA---GAGA---TGTAAGGA AGG-AAAAAGTTCTCCTCGACACTTTTAGGGTCC-TGGCT--GGGTCTGAAAATGAAACTGAC-CAAGACAGATTAACAG GAGAAAA-GCACACAGA-TTTATTGACTCTTTACATGAACATAGGGGTCTTTATGTGGGAACATGGGATAAAGACCCA-- -AAGTGGCCAAAGCAGGAAGCTTTCATACCTTTTAGACAAAGAAAT----AATAAATC--AGAATAATTGACCAGAC--- ---AAAGGAGTTTGGG---CTAGTGGTAGCCCAACTAAAACTAATTAGTCCTAAACCTCTTTAACTAAGACATGAACTTC CTTATCTAGGACAAGAACAAGGAAGATAAGGGTTAGTTTAAGTAGGTGTGTT--TG--------TCT--------ATTGC C-TTCTCTGGTCCTGTAAGAGCATGTCTCCAAT-------------------------AAAAGGAGAATTCATTTCCTGA CTGTAGGCAGAAAAGG--------GAGAACTTTTTCTGTGTTTACTACTGCTCAATTGCCTTCAGCTCAACATATT-TTT TATAACAAAGAGGCACATTTTAGGGTGGCACATTCTGGTTTCCTTCA---GGAA---CTATCTCCCTCTCACAGAATGTG AACAGCATCACTGTTGTAGTCTTCACATCTGA >Manis_pentadactyla NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNN---NNNNNNNN NNNNNNNNNNNNNNNNNNNNNNCCCTTTGGCTCA-TGGCT--GGGTCTGAAAATTAAACTGAT-AAAGACAGATTAACAG GAGAAAA-GCACACAAATTATAATGACTTTTTACACAGAGGTGGGAGTCTTTGTA----------AGAGAATGATCTGAA AAAATGGTCAGAGCAGGAAGCTTTCATACCGTTTTGACAAAGAAGC----AATACATTTTTGAATAATTGATAAGAC--- -----AAAGTTCTGGG---CTAGGGCTAGTCCCTCTGGAAATAAGTAGTCCTTATCTGCCTTAACTA------------- --------------------GGAATATAAGGGTGAGTTTAACAAGATTGGTC--CTCAGAGTCTTCT--------AGCAC C-TTCTCTGGGCTGATGAGAATCTGTCTCCAAT-------------------------GAAAG---AGTTTAATTCCTGC CTTTAGGCAAAA-----------------------------------------AATTGCCTTCAGCTGTAAATAAT-TTT TATGTCAAGGAGGCATATTCTG---------------GTTTCCTTCA---GAGA---CTATTTCATTCTCCCAGAATGTA AGCATCAGCATTAGTGTCTTCTTCATGCCTGA >Equus_caballus GATTTCTAGTCTGGGCCAGGGCT-----GTCACCCAGCACCATGCTGATAATTATCCTGTGA---GGGA---TGTAGGGG AGG-AAAAAGTTTTCCTTGACCCTCTTAGGGTCC-TGGTT--GGGTCTGAAAATTAAACTGAC-AAAGACAGATTAACAG GAGAAAA-GCACACAAATTTGATAGAATTTTTACATATACATGGGAGCCTTCACA--------AGAAATGAAGACCTGAA GAAGTGGGCAGAGCAGGAAGTTTTCATACCTTTTAGACACACACACACAAAATA------TGAAGGATTGACAAGAC--- ----AGAGGGTTTGGG---CTAGGGGCAG------------TAAACGTTGAAGAA-----GTAACTA------------- --------------------GGAAGATTAGGGTGAGTTTAACAAGGTTTATT--TTCAGATTTCTCC--------AGTGG C-TTCTCTGGGCTGATGAGAGTCTGTCTCCAAT-------------------------AAAAGGAGAATTTATTTCCTGC CTGTGGGCGGAAAAGG--------GGGAGTTTTGTCCGTGCCTACTGCTTCTTAATTGCCTTTAGCTGAAAATAATCTTT TATATCAAAGAGGCATATTTTGGTGTGACATATTCTGGCTTCCATCA---GGGA---CAGTTTCACTCTCACAGAATGTG AGCATCGTCATCAGTGTCTTCTTCACATCTGA >Ceratotherium_simum GATTTCTAA-CTAGGCGAGGGCC-----GTCCCCAAGAACCATACTGGTAAGTATCCTGTGA---GGGA---TGTAGGGG AGGAAAAAAATTTTCCTTGACCCTCTTAGGGTCT-TGGCT--GGGTGTGAAAATTAAACTGAC-AAAGACAGATTAACAG GAGAGAA-GCACACAAATTTGATAGAATGTTTACACGTATATGGGAGCCTTCACA-------AGAGAATGAAGACATGAA GAAGTGGCCAGAGCAGGAAGTTTTCATACCTTTTAGACAAAAAATCCCCCAACATATTTGTGAAGAACTGACAAGAC--- ---AGAAAGATTTGGG---CTAGTGATAG------------TAAATGGTGAAGAA-----GTAACTA------------- --------------------AAAAGATTAGGGTTAGTTTAACAAGGTTTATT--TGCAGATTCCTCT--------AGTTC C-TACTCTGGGCTGATAAGAGTCTGTCTCCAAT-------------------------AAAAGGAGAATTTATTTCCTGC CTTTAGGCAGAAGAAG--------AGGAGTTTTTTCTGGGCTTACTGCTTCTTAATTGCCTTCAGCTCGAAATAAT-TTT TATATCAATGTGTCATATTTTGGGGTGACATATTCTGGTTTCCTTCA---GGGA---CCATTTCACTCTCACAGAATGTG AGCATTGTCATCAGCGTCTTCTTCACATCTGA >Sus_scrofa GACTTCTTGTCTAAATAAAGGCT-----GCGCCTTAGCACTCCACTGACAGCT-TCACGTGA------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------GGGG---CCATTTCACTCTTACAGAGGGTG AGCACTGCCGT--GGGGTTTCTTCCCATACGA >Bos_taurus GATTTCTCGTCTAAGCCAAGGCC-----ACCCTTTAGCACCACACTGACACCTATCACGTGA------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------GGGA---CCATTTCACTCTCGCAGAAGGTG AGCATCATCA---GTGT-TTCTTCACATCTGA >Myotis_myotis GCTTTCTCATCTAAGCGAGGGCCCCTCCAGCACCCAGCCCCACAATGATAAGTATTATGTGA------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------GGGA---CCATTTTGCTTTCAAC------- ----TTCTCATCATTGTCATCTTCACATCTGA >Rousettus_aegyptiacus AACTTCTTTTCTAAGTGAGGGCCCCTCAACCCCCCAGGCCCACCACCATAACT--CATGTGA------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------GGAC---CTATTTCACTCTCACGGAATGTA AGCATTGTCATTAGTATCTTCTTCACATCTGA >Condylura_cristata TATTTCTCTTGAAAACGAGACCT------CTACCCAGCACTACACTGATCGCTTTCCTGTCA------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------AG-A---TT-GTTTGTTCTCACATAGTGTG AGCATCGGTGTCTGTG--------ACATCTGA >Uropsilus_gracilis GGTTTCTCCTCTAAATGAGGGCC-----ACTATTGAACACCACACTGACACCTACCATGTGA------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------GGGA---CATGCT-------------TGTG ACCATCGGTACTGGCATCTTTGTGTCATCTAA >Homo_sapiens GATTTCTAATCTAGGCAAGGGCC------GTGCCAAGCACCACACTGACAGCTATCATTTGA------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------GGCA---ATATTTCACTCTTATAG--TGTG GTCACCGTC-CCAGTGTGTTTTTCACATCTAA Dog11_LTR >MER34C_CF ----------------------------------------------------------------------TGTTGAGG-A GAAAAAAATTTTCCTC----TACCCTTCTAGGTTCTTCTGGCTGGTCTAAGAATCAAATTGACATAAGACAGATTAACAG GAGAAAA-ACAAACAAAAGTTTAATAACATATGTATACCTCCTGTATACATGGGAGAGACCCAGGAAAACTGAGTAACTC CCCGAAATGGCCCAAGCCATCAC-CTTAAATACCATCTCCAGCTAAAGACAAAA-AAGATGTTGGGGGTGGGG--AGTCA GTTATGGGAGGTTACCAGGAAAA-GCACAGTAAACAAGGGTAAGGTTGTTATGCAGATTTAAGTCCTTGCCTTCTCCATT GATAAGAGTTTCTAGAGATTTAGAGTCATCCTCCTCTTCCTGGTACAGAGAGGG-----AGACACCCTTACAAATGGAGA TTTCCCTTATAAATGTAAATGTCT--CTTACAAAAGGGTAACTTCTACTCGGTTTTCAGAGCTTCTCCTGTGTCTGCAGT TTCTTAAAAATAATCAGCCTAAAATAATCCTTATGCCAAAGAGGCATATTTTGGGGTGGCAAATTCTGCTCCCCTTCA-- ----------------------------------------------------------------- >Canis_familiaris CAGCTGAAGTGGAT----------GGAAGGAGATTCAAAACCAAAGCATCTGTCTTAGGC---CTGT---TGTGGGGT-A G-AAAAAATTATTTTCCTTCTCCTCTTCTAGGCTCTT--GACTGA-ACATGCTTGTAATT--CA---GAGAGATTAACAG GAGAAAA---AGGAATAAGTTTAATAACATGTGTA--CCCCCTGTATACATGGGAGATACCTGGGAAAACTGAGTAACTC CCCCAAATGGCCCAAGCCATCGCTTTTAAGTATCATCTCTAGCTAAATAA--AG-TGGATGTTAGAGGTTGGG-TAGCCA GTTTTGAGAGGTTACCAGGAAAACATATAGTAAATA-AGGTAACGTTGCTATGCAAATTTAGAC-----CCTTCTCTGCC CATA--AATTTCTAGA----CA--GTCACTCTCCTCTTCCTGTTACAGAGAGGA-----------------------TGA TTTCTCTTAAAACTGTAAATGTCC--CTTACAAAGAGGTAACTTCTGCACGGTTTTCAGAGCTTCTCCTGTGTCTGCTGT TTCTTAAAAATAATTA--------------TTATGCCAAAGAGGCATATTTTGGTATGGCAAAATGTGCTCCTCATCA-- -GCGG---ACA------TGTATAATGCACTATTGCAATGGATACATTACAGAATGCTATCAATAA >Felis_catus CAGCTAGTATGGAT----------GGAAGGAGATTCAAAACCAAATAATCTGCCTCATGC---ATGG---CATGGGGTCA G--AAAAATGACTTGCCCTTTCCTCTTCTAGGTTCTT--GGCTGAGACATGCCTGTAATT--CA---GACAGATTACCAG GAGAAAA-GTAAACATGTGTTTAATAACATGTGTA--CCTTCTGTGTACATGAAAGATACCCAAGAAAACTGAGTAACTC CCCCAAATGGCCAAAGCCATCAC-TTTAAATATCATCTCTAGCTAAAGACAAAG---GATGGTGGGGGTGGGG-TAGCCA GTTGTGAGAGGTTACCAAGAAAATATACAGTAAACACGGGTAACGTTGTTATGCAGATTTAGATTTTTGCCTTCTCTATT GATA--AATTTCTAGAGATTTA--GTCACTCTTCTCTTCCTGTTACAGAGGGTG-------------------------A TTTCTCTTACAATTGAAAATATCC--CTTACAAAGAGGTAACTTCTACTTTGTTTTCAAAGCTTCTTCTG------CTGT TTCTTAAAACGAATTA--------------TTGTGCCAGAGAGGCATATTTTGGTGTGACAAAATGTGATCCCCTTAA-- -GTAG---GCA------TATTTAATGCATTATTGCAATGGGCACATTATAGAATACTATCAATAT >Manis_pentadactyla CAGTTAAAGCAGAC----------TGGAGAAGATTCAAAACCAAAGCATCTGCCTCCTGC---CTGG---TGTGGAGG-A G-GAAAAATAATTTTCCTTCTACTTTTGTAGGTTCTT--GGCTAAGATACTCTT-TAAT---GAAAAGGCAGATTAACAA GAGAAAGATTAAACAAAAGTTTGGTAATATGT-----TATCTCCCATATCGCAAAGATACCTAAGAAAACTGAGTAACTC TCCAAAATGTCCCAAGACACAAC-CTTAAATTCCGTCTTCAGCTAAAGACAAAAGAAGATGTTGGGGGTAGGG--AGACA GTTGTGGGAGGTGTCCAGGAAAA-ACATAGTAACTAAGGGTAAGATTGTTGTGTAGGTCAAGAT------CTTCTCCAGT GATGAGAATTTCTAGAGATTTA--GTCATTCTCCTCTTCCTGGTGAAGGGGAGGGCGACAGACACCCTTACAAATGGAGA TCTCCCTTGTAAATGTAAAGGTTC--CTTATAAAGGAG-AACTCCTACTCAGTTTTTAGAGCTTCTCCTGTGCCTGCTGT TTATTATGAACAATCAGCCTAAAA------TAATGACAAAGAGGCATATTTTGGGGTGACAAATTCTGCTTCCCTTCA-- -GCAG---GCA------TATA-CATGAGCTAGTGCAACAAATACCTTACAAAATACTAGCAATAA >Myotis_myotis GAGCTAAAGCAACT------ACATGGGAGGAGATC------------------CTCATAT---GTGG---TGTTGGGG-A G-GAAAAATAATTTTGCCTATACCCTTCTAGGTTCTT--GGCTGAGACATCCT-GTAACA--AAAAAGGCAGACAAACAG AAGAAAA--TAAACTGGTGTTTACTAGC--ATTTATACCTCCTGTATACATGGAAGATATTCAGGAAAACTGAGTAACTC TCTGAACTAGCCCAAGCCATCAC-CTGAAATACCATCACCAGCTAAAGACAAAACAAGCTGGTGGGGGTGGAAGAAAGCA ATTATGGGTG-------GGAAAG-TCCCAGTAAAGAAAGGTGAGATTGTTATGCTGATTTAGGT-CTTGCTTTCTCCACT GATAAA----TTTAAAGATTTA--GTCATTTTCCT-------TGATAGAGAGTCACACACACAAATCAGACAAATGGATA TTCCCCTTATACATGTAAATGTCCAGTTTTAAAAAGTGTAATATCTACTCTGTTTTTAGAGCCTCTT-TATATCTGCTGC TTCTTAAAAATAATAA------------------GCCTAAAATAGCTATATTTAAGTGACAAATTCTGCTCCCCTTCT-- -GTGG---GCA------TATTTAATATGCTATTACAATGAATACATCTCAAAATACTATCAATAA >Rousettus_aegyptiacus CAGTTAAAGCAAAT----------GAGAAAAATTCTAAAACCAAACCATCTGACTCATGT---CA-----TGTGGGAG-A G-TAAAAATTTTTTTTTCTCTACCCTTCTAGGCTCTT--AGCTGAGACACCCTTGTAAT---GAAAAGATAAATTAACAG AAAAAA----ATATAGAAGTTTAATAACCTGTATA---CCTCTGTACACATGGAAGATTCCCAGGAAAACAGAAAAACTC CCTAAAATGGTCCAAGCTATCAC-TTAAAATAGCATTTCCAGC-AAAAACAAAAGAAGATGTTGGCAGTGGGAGTAGCCA GTTACAGGAGGCTGTTGGAAAAA-GGATAGTAAAGAAAAGTTAGGTTGCTAGGCAGACATAGAT-CTTGGCTTCTCCATT GATA--GATTTCTGGAGAGTTA--GTCATTTTCCT-----TGATACAGAGAGGG-----ACACACACTTACAAG-AAAGA TTTTCATTATACATGTGATTGTTT--CTTACAACAGTGTAATGTCTACTCTGTTTTTAAAGTTTCTCCTGTGACTGTTGT TTCTTAAAAATAGTCTAAAATAATTT----TTATGACCAAAAGGTATATTTTGGGGTGACAAGTTTT-CTTCCCTTCA-- -GTGA---ACA------TATTTAATGT-TTATTGCAATAAATACATTACCAAATA----CAATAA >Sus_scrofa CCACTCAAGTAGAT----------GGGAGGAGATCTCAAACCAAAGTATCTAAATCGTGT---GTGG------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------GCA-----TTATTTAATGTGCTGCTACAATGAAAACATGATAAAATACTATCAGTAA >Bos_taurus CAGCTCAAACAAAT----------GGGATGAAATATGAAAA-AAAAAATCTACCT--TGT---GTGA------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------GCA------TATT-AATGTGCTATTGGAATGAATACA-GACAAAATATTGTCAATAA >Equus_caballus CAGCTAAAGCAGGCGGGGGGGGGGGGGGGGGGATCCAGGAGCA-AGCATCTGTCTCCTGC---GTGG------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------GCA------TATTTAATGTGCTACTGCAATGAACACATTACAAAATACTATCAATAA >Ceratotherium_simum CAGTTAGAGCAGAT----------GGGAGGAGATTCAGAACCAAAGCATCTGTCTCCTGC---TTGG------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------GCA------TACTAAATGTGCTATCGCAATGAATACATTACAAAATACTATCAATAA >Condylura_cristata CAGCTAAGTCATAT-------------AGCTGTTCAAAGCCAAAAGCATCTGCCTCAAGC---ATGG------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------GGA------TATTA--------ATTGTAATCGACACATTACAAAATACTACTGA-AA >Sorex_araneus TAG-TGAAGCAAAT----------GGGAAGTGGTCCAATAACAGAGCAGAAGCATCTGAC---TTGT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------GCACAGACATATTTAGTGTGGTATTGTAATGGATAC-TTACAAAATACTATCTATAA >Cavia_porcellus CAGTCAAGGCAGGT----------GGGAAGCAATCTTAAAACAAAACACTGGTGTTCTGC---TTGG------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------GCA------TAGTTCATGTGCAATTACAATGTATACATTACAAAATAGGGCCAAAAA Dog12_LTR >MER34C_CF --------------------------------------------------------------------TGTTGAGGAGA- --AAAAAATTTTCCTCTACCCTTCTAGGTTCTTCTGGCTGG--------TCTAAGAATCAAATTGACATAAGACAGATTA ACAGGAGAAAAACAAACAAAA--------GTTTAATAACATATGTATACCTCCTGTATACATGGGAGAGACCCAGGAAAA CTGAGTAACTCCCCGAAATGGCCCAAGCCATCACCTTAAATACCATCTCCAGCTAAAGACAAAA-AA-GATGTTGGGGGT GGGG----AGTCAGTTATGGGAGGTTACCAGGAAAAGCACAGTAAACAAGGGTAAGGTTGTT-ATGCAGATTTAAGTCCT TGCCTTCTCCATTGATAAGAGTTTCTAGAGATTTAGAGTCATCCTCCTCTTCCTGGTACAGAGAGGGAGACACCCTTACA AATGGAGAT------TTCCCTTATAAATGTAAATGTCTCTTACAAAAGGGTAACTTCTACTCGGTTTTCAGAGCTTCTCC TGTGTCTGCAGTTTCTTAAAAATAATCAGCCTAAAATAATCCTTATGCCAAAGAGGCATATTTTGGGGTGG-CAAATTCT GCTCCC----CTTCA----------------------------------------------------------------- ---------------------------- >Canis_familiaris AGAAATAATTTCTTTATCTTGCTGATTGCTAACTTCTCAGTGCCTTTAGTGTGCTAAC---ATGC---TGTTGGAGAGAT AACATAATTTTCCCTCTACCCTTCTAGGTTCT--TCGCTGAGATACATCTGTAATAATAATA-------AAAAAAGATTA ATAGGAG----ACAAACAGAA--------GTTTAATAGC--ATGTGTACCACCTGTAT--ATGAGAGATGGTTAGGAAAA CCGAATAACTGCCCAAAACATTCCAAGCTGTCAGCTTAAATAACATCTTCAGCTAAAAACAAAAGAA-AATATTGGAGGT GAGG----AGTCAGTTATGA-AGGTTAGTAGGAAAAGCACAGTAAATAAAGGCAAGGTTGTT-GTGCAGATTTAGGTCAT TGCCCTCTCCACCAGTAAGAGTTT-TAGAAATTTAGAGTCATTTTTCTCTTCCTGCTACAGAGAAGGAGACAGTCTAACA GATGGAGATTGTACATTTCCCTATACATGTAAATGTCTCTTACAAAAGGGTAACTTCT---CAGTTTTTAGATCATTTCC TATGCCAGATGTTTCTTTAA---AATCAGCCTAAAATAATGCTTATGCCAAAGAGACATAGCTTGGG-TGGTTATACCCT GCTCCC----CTTCA---GTGC-----CTAGCTCTTTTGGAGAAGCTATGGAA--------------------------- -TATATA-----TGCACAGACTTCCTAC >Felis_catus AGAAATAATTTCTTTATTTTGCTGATTGCTAAATTCTCAGTACCTTTA-TGTGCTAAT---GTGC---TGTTGGGAAGAT AAAATAATTTTCCCTCTACCCTTCTATGTTCT--TGCCTGGGATGCACCTGTAATAATAAAAAT-----AATAAAGATTA GTAGGAGAAAAATAAACAGAA--------TTTTAATAAC--ATATATACCACCTATAT--ATGGGACATGCCTAGGAAAC CTGAATAACT-CTCAAAAGATTTCAAGCTGCCATCTTAAATTACATCTCCAGCTAAAGACAAAAGAA-GATACTGCAGGT GAGG----AGTCAGTTATGAGAGGTTACCAGGAAAAGCACAGTAAACAAAGGTATGGTTGTC-AGGCAAATTTAAGTCAT TGCCTTCTCTACTGATAAGAATGT-TAGAAATTTAGAGTC---TTTCTCTTCCTGGTACAGAGAAGGAGACACCCTAACA GATGGAGATTGTACATTTCCTCATACATGTAAATGTCTCTTACAAAAGGATAACTTGT---CAGTTTTTAGAGCTTTTCC TGTGTCAGCTGTTTCTTTTAAA-AATCAGCTCAAAATA------ATGCCAAAGAGGCATAGTTTGGGGTGGTTGTATTCT GCTCCC----CTTCA---GTGC---CAATAGACCTCCTGGAAAAGCTATGCAA--------------------------- -TATATG-----TGCACAGATTTCCTAC >Myotis_myotis AGAAATGATTTCTTCATTTTGCTGATTGTCAAATTCGCAGTGCTTTTAGTATGCTAAT---GTGC---TGCTGAGGAGAA TAAATAAGTTTTGCTTTATCCTTCTAGATTCT--TCGCTGAGACTGCACTGTAATAAA-----------AAGACAGATTA ACAGGAAAAAAAAAAACAAAACACCAGATGTTTAATAAC--ATTTATAACTCCTGCATACATGGGAGATGTCCAGAAAAA C----TAACTCTTTGAAATGTCTTAAGTCACCACATTAAATAATA----------------------------------T GAGA----AGGCCAATTTGGGCGATGACTGGGAA---------AAACAAGGGTAAGGTTGTTAATGAGGATTTTAGTCAT TGACTTCTCCATTCATA--TATTTCTAGAGATTTAGAATTATCTTTCTTTTCCTAGTCTAGACAGGGAGACACCCTTACA CATGGAGATT-------------------------TCTCTTATAAAAGGGTAACTTCTGCTCTGTTTGCAGAACTTTCCC AAT----GCTCTTTCTTAAAAATAATCAGCCTAAAATAA-CCTTATGCCAGAGGGGCCTATTATGGGGTGG-TATATGGT GTCCCCCCCACCTCA---GTTC---CTATTGATCTTCCAGACAAAATACAGTT--------------------------- -TATTTA------CCACAGATTTCCTAC >Rousettus_aegyptiacus AGAAATAATTT----ATTTTGCTGATTGCTAAATGTACAGTGCTTTTAGTGAGTTAAT---GTGC---TGTTGAGGAGAA AAAATAATTTTT-TTCTACACTTATAGGTTCT--TGGTTAAGACTCTCCTGTAATA-------------AAAAGACATTA ACAGGAGAAAAACAAAAAGAT--------ATTTAATAAC--ATGTACATCTCCTGTATATAT-AGAGATACCCAGAAAAA CTGAGTAACTCCCTGAAATGTCTTAAGACACTGTCTTAAATAATATCTTTAGCAAAAGACAAAAAAATGATGTTAGGGGT GGAGGGAAGGCCAGTGATGAGAAGTTGGCAGGAAAAGCACAGTAAACAAGAGTAAGATTATAAATGAGGATTTAAACCAT TTCCTTTCCCACTGATAAGAGTTTCTAGAGATTTAGAGTCATTCTCTTCTTCCTGCTACAGAGAAGAAGGCACTCTTACA CATGAAGAT------TACTCTTATA-GTATAAATATCTTCTATAAAAGAGTAACTTCTACACAGTTTTCAGAGCTTTCCC TACATCTGCTGTTTCTTAAAAATAATTAGCCTAAAATAATCCTTATGCCAAAGAGGCATATTTTGGGTTCA-TATATTCT TTTTCC----CTTCA---GTTC---TTA---------CAGACAAACTATGGTATATAT---------------------- -TATATA-----TGCATGAATTTCCTAC >Sus_scrofa AG-AATAATTTCTTTATTTTGATGATTGCTAACTTCTCAGTGTATTTAACATTCTAAT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------ATGC---CTGTAGATATTCCAGAGAAACTGTA------------------------------ -CATAGAGTTCTTACACAGATTTCCTAC >Tursiops_truncatus AGAAATAATTTCTTTATTTTGCTGGTTGCCAGAACCTCAGTGCCTTTAGTGTGTTAAT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------GTAC---TTATAGATATTCCAGAGAAACTATGATATATATATATATATATATATATATATAT ATATATA-----TATGCAGGTTTCCTAC >Equus_caballus AGAAAGAATTCCTTTATTTTGCTAGTTGTCAAATTCTCAGTGTCATTAGTGTGTTTTT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------GTGC---CTATGGATCTTCCAGAGAAACTATAGTA--------------------------- -TATACA-----CGCACAGATTTCTTAC >Ceratotherium_simum AGAAAGAATTTCTTTATTTTGCTGGTTGCCAAATTCTCAGTGCCATTAGTATGCTAAC---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------GTGC---CCATGGATCTTCCAGAGAAACTATGGTA--------------------------- -TATATA-----TGCACAAAT-TCCTAC >Condylura_cristata AAAAATG-----TGTGTTTTTC---TTGTCAAATTCTCAGTGCCTTTAGTGTGATGAT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------GCAC---TTATAAATCTTTTAGAGAAA----------------------------------- -CACATG-----CACAGAGATACTGTAC >Uropsilus_gracilis NNNNNNNNNNNNTCTATTTCAC---TTGTCAAATTCTCAGTGCCTTTAGTGTGATAAT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------GCAC---TTATAAATCTTTTAGAGAAACT--------------------------------- -CATGCA-----CAAAGAGATACTATAC >Homo_sapiens AAAAATAATTTCTTTATTTTGCTGGTTGCTAAATTCTCAGTGTC-TTATTGTACTGAT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------GTGC---TTGCAGATGTTCCAGAGAAGCTGTGGTA--------------------------- -TA---------TGCACAGATTTCCTAC Dog13_LTR >ERV54-EC_LTR -------------------------------------------------------------------------------- -------------TGTTAAAAACAA----GACAACAGGCCCAAAATGGAGTCACTTATGCTAAGCCCCACGTCACCAAAC CGAGACTTAACTTAATTACAGTTTCGGCTCTCC-CAGAAATGGAATCTTAAACCAGTCAATCAGGAATCACCTGATCAGC ACTAGTTAGGTAATCTGCCTGATAGACCCC-TGCCATCCCCTAAAGGAAAGTAACCTTGCAATAACCAATCCACTTTTTT GCCTAGTATAACTTCCTTGTTC-----CTGCTCCCTTCTGCCTATAAAAGTCTTTCATTTT------------------- --------GTACAGCTCCTCGGAGCTCCTTTCTATCTGCTAGATTGGATGCTGCCCAATTC--ATGAA----TCATTGAA TAAAGCCAATAAGATCTTTAAAATTTACTCAGTTGAATTTTGTTTTTTAACA---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------- >Canis_familiaris AAGATCAG-TT-TTGGCCAGGAATG------TTTACCTAAAAATTTGCAGTTTAGCTCAATAACATGGATGGTGCTTTGG CAT---CTAT---TGTTGAACACAG----GGCAACAGGCCCAAAATGGAGTCACTTATGCTAAACCCAGGGTCACCAAAC CGAGACTTAGCTTAATTACAGTTTTAGTTTTCC-CAGAAAAGGAATCATAAACCAGTCAATTAAGAATCAGTTGATCAAC ACTAGTTAGGCCATCTGCCTAAAGGTCATC-TGCCATCCCCTAAAGGAAAGTAACCTTGCAATAACCAACCCGCTTTTTT ACCTAGTATAACTTCGTTGTTCGCATTCTTTTCTTTTCTGCCCTTAAAAGTCTTTCATTTT------------------- --------GTACAATTCCTCAGAGCTCCTTTCTTCCTGCTAGATTGAATGCTGCCCCATTCGAATTGA-TTTTTGCTCAA GTAAACTCATAAAATTTTTAATATGC-CTCAG-----TTT-ATCTTTTAACA---TGAT---GGAAGTGGAGCCTTTCC- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------GT TAAAATC------------------------------------------------------------------------- ------------------------------------------------AAGGTATATGTTGCTCTCAACTG >Felis_catus AAGATCAG-TT-TTGGCCAGGAGTG------TTTACCTAGAAATTTGCAGTTTGGCTCAAAAATACGGACAGTG-TTTGG CAT---CTGT---TGTTGAAAACCG----GACAACAGGCCCAAAATGAAGTCACTCATGCTAAGCCCAGCATCACCAAAC CGAGACTTAACTTAATTACAGTTTCAGCCGAAAGCTGAAATGGATTCGTAAACCAGTCAATCAGGAATCGGTTGATCAAC ACTAGTTAGGTCATCTGCCTGATAGACCCCTTGTCATTCCTTAAAGGAAAGTAACCTTGTGATAACCAACTCTCTCTTTC ACTAAGTATAACTCTGCTGTTC-----CCATTCTTTTCTACCTATAAATGTCTTTCTCTTTTTTTTTAATTTTTTTTTTA CGTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNN---NNNNNNNNNNNNNNNNN- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------NN NNNNNNN------------------------------------------------------------------------- ------------------------------------------------NNNNNNNNNNNNNNNNNNNNNNN >Manis_pentadactyla NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNCAGTTTGGCTTAAGAGTATGGCTAGTGCTTTGG GAA---CTAT------TAAAAACAA----AACAGCAGGCCCAAAATGGAGGTACTTATGCTAAGCCCTGGGTCACCAAAC TGAGACTTAACTTA--TTAAGTTTTGGTGCTCC-CAGAAATGGAATCTTAACTCAGTCA----GGAATCACCC-ACCAGT ACTAGTCAGGTAACCTGCCTGTTAGATCCT-TACTATCCCCTAAAGGAAAGTGACTTTGCAATATTCAACCTGTATTTTA CCTTAGTACCTCTTCCTGCGTC-----CTGCTCCTTT-TGTCTATACAAGTCTTTTATTTT------------------- --------GTACAGCTTCTTGGAGCTCCTTTCTATCTGCTACATTGGATACTGCCTGATTCAAATAAATTTTTTGATCAA ATAAACTCGTAAAATTTTTAATAT-------------TTT-ATCTTTGAACA---CTAT---GGAAGTGGAGTTTTGCC- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AG TAAAATC------------------------------------------------------------------------- ------------------------------------------------AAGGTATATCTTTCTCTCAACTG >Sus_scrofa AAGCTCAA-TT-TTGACCAGGACTA------TTGACTGAGAAATTTGCAGTTTAGCCCAATAACATGGACAGTGCTTTGG AAT---CTAC---TGTTAAAAAGAA----GACAACAGGCTGAAAATGGAGTGACTTATGCTAAGCCCTACATCACCAAAT TGAGATTTAACTTAATTATAGATTCTGCTCTCC-CAGAAATGGAACCTTAAATCACTCAGTCAGGAATCTCCTGGTCAGC ACTAGCTAGATAATCTGCCTGAGAGACCTC-TGCCATCCCCTAACAGAACAAAAC--CATAATAAGCAGCCCACTTTTTT GCCTAAGATAACATCCTTGTTC-----C---TCCCTTCTGCCTATAAAAGTCTT--GTTTT------------------- --------GTATAGCTCCTTGAAGCTCTTTTCTATCTACTAGACTGGATGCTGCCCAA-TTGAATCAA-TTGTTGCTCAA ----ACTTGTAAAATTTTTTAAATGC-CTTGG-----TCT-ATCTTTTAATA---CCAC---AGAAGTAGAATATTATC- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AG TACAATC------------------------------------------------------------------------- ------------------------------------------------AAGGTATATTTTGCTCCCAACTG >Bos_taurus AAGATCAA-TTTTTGACCAAGACTAGAACTATTTACCTAGCAATGTGCAGTTTAGCTCAATAACATGGATAGTGCTTC-- TAT---CTGT---ATAGTAAATGGATAGTGAATCTAGGCCCCAAATGGAGTCACTTATGCTAAGCCCTGTATCATCAAAC TGAGATTTAACTTAATTACAGTTTCTGCTTTCC-TAGAAATGGAATCTTAAATCAGTCAATCAGGAATCACCTGATCAGC ACTAGTTAGGTCATCCGTCTGATAAACCCC-TGTGATCCCCTAAAGGAAAGAAAC--CACAATAGCCAACCCACTTTTTT ACCTAGTATAATTTTCTCATTT-----CTGCTCCTTTCTGCCTATAAAAATCTTTCATTTT------------------- --------GTACAGCTCTCTAGAGCTCCTTTCTGTCTGCTAGATTGCATACTGTCCAATTCAAATCAG-TTGTTTCTCCA ----ACTTGTAAAAACTTTAACATGC-CTCAG-----TTT-ATCTTTTAACA---CTGT---GGAAGTTGAGT-TTGCC- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AG TATAGTC------------------------------------------------------------------------- ------------------------------------------------AAGGTATATTTTGCTCTCAAATG >Equus_caballus AAGACCAA-TTTTCAAGCAGAAGTA------TTTACCTAGAACTTTGCAGTTTGGCTCAATAATATAATCAGTGCTTTGG AAT---CTAT---TGTCAAAAACAA----GAGAACAGGTGCAAAATGGAGTCGCTGATGCTAAGCCCCACACCACCAAAC CAAGACTTAACTTAGTTACACTTTTGAC--TCC-CAGAAATGAAATCTTAAATCAGCCAATCTGGAATCATCTAATCAGG ACTGGTGAGGTCATCCGCCTGATAGAACCC-TGCTCTCCCCTAAAGGAAACTGACCTTGCAATAACCAACCGGCTTTTTC TTCTAGTATAACTTCA----TC-----CCACCCCCTTCTGCCTATAAAAGTCTTTCAGTTT------------------- --------GTACGGCTCCTCGGAGCTCTTTTCTATCTGCTAGATTCGCTGCTGCCTGATCTGAATTGA-TTTTTGCTCAA ATAAACTCTTAAAATTTTTAATAAGC-CCCAG-----TTT-ATCTTTTAACA---TTAT---GGAAATGGAGTTTTGCC- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AG TAAAATC------------------------------------------------------------------------- ------------------------------------------------AAGGTATATTGTGCTCTCAAATG >Ceratotherium_simum AAGATCAG-TTTTTGACCAGGAGTA------TTTACCTAGAACTTTGCAGTTTGGCTCAATAATATGGACAGTGCTTTGG AAC---CTGT---TTTTAAAAACAA----AACTACAGGTGTAAAATGGAGTTGCTTATGCTAAGCCCCGAATCACCAGAT CAAGACTTAACGTAATTAGCGTTTT--CACTCC-CAGAAACACAATCTTAAATCAGTCAATTGGGAATCACCTGATCAAC CC--GTTAGATAATCTGCCTGATGGACCCC-TGCCATCCCCTAAAGGAAAGTGAC--TGTAATAATCAAGCAGCTTTTTT GTCTAGTGTAACTTCCTTG-TC-----CAGCTCGCTTCTGCCTGTAAAAGTCTTTCACTTT------------------- --------GTATAGCTCCTCAGAGCTCTGTTCTGTCTGCTAGATTGGATGCTGCCTGATTTGAATTGA-TTTTCCCTCAA ATAAACTC--AAAATTTTTAATACGC-CCCAG-----TTT-ATCTTTTAACA---CTCT---GGAGGTGGAGTTTTGCC- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AG TAAAATC------------------------------------------------------------------------- ------------------------------------------------AAGGTATATTTTGCTCTCAACTG >Myotis_myotis AAAGTCAATTTTTTGACCCAGAGTA------TTTACCTAGAAATTTACAGTTTGGCTCACTCATATGGATAGTGCTCTGC AAC---ATAT---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------AGAGGTGGTGTTTTGCC- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AG TAGAATC------------------------------------------------------------------------- ------------------------------------------------AGGGTATATTTTGCTCTGAACTG >Rousettus_aegyptiacus AAGGTCAA-TT----------------------------------TGCAGTTTGGCTCAAGCATATAGACAGCGATTTGC AAC---CTAT---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------AGAGGCGGCATTTTGCC- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AG TAAAATC------------------------------------------------------------------------- ------------------------------------------------AAGGTATATTTTGCTCACAACTG >Condylura_cristata ATGGTTATTTT--------GAGAGA------TTTACCCAGAAATTTGC--TGTGACTCAATAATCTGAACAGTATTTTGG AAT---CTCT---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------GAAGATAGAA--TTGTC- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AG TAAA---------------------------------------------------------------------------- ---------------------------------------------------------------CTCAACAG >Sorex_araneus NNNNNNNNNNNNNNNNNNNNNNNNA------TTTACCCAGAAATTAAAAG-TTAACTCAATAATATGAACAATGCTTTGA AGT---CTAT---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------GGAAATGGGATTTTGCCA AATGACATCAAGAAATGTTTTCCTCTCATGCCCTGCCACAGTGGCAGGGTGGGTTGGGGGGGAGATGGGATTGGGGAGGG TGGGAGGGACACTGGGTTTACGGGTGGTGGAGAATGGGCACTGGTGAAGGGATGGGTTCCCGAACTTTGTATGAGGGAAG TATAAGCACAAAAGTGTTATAAATCTGTAACTGTACCCTCACGGTGATTCTCTAATTAAAAATAAATAAATTATAAAAAT AAAAAATAAAAAAAAATCAACTATCAAAAATTTAAAAAAAAAAAAAAAAAGAAATGTTTTCCTCTCAACTG >Homo_sapiens AAGGTCAA-ATTTTGACCAGCAGTA------TTTACCTAGAAACTTGCATTTTGACTCAATAATATGGACAGTGCTTTGG AAT---CTAT---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------GGAGGTGATGGTTCACC- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AG TAAAATC------------------------------------------------------------------------- ------------------------------------------------AAGGTATATTTTGCATCTAACTG Dog14_LTR >CARERVR1_LTR --------------------------------------------------------------TGTTGGGGAAGGTCATCG AGAAGACGTGACCGCCGGTTGACCC--GTGAGCTGGACCCGGG-CAATCAGAGGCTCCTCACCCCCTCCCCTGTCCTTGG AATGTGGGTTCCGCTTGCCTTCCCCGCTCCCAGAGGCTGCTCCAAGGACACAGCCTTG----AGATAGTGATGTGGTGTT GAGAACACCTGNACGGTATACGTGACTGAACCCAGTTAAGGCCTCTATATAAACTTTTAAGATT-TGGCGGGC---GGGT GCGGAGATCTACTCGTCTTGCTGCCGCCCAAGACAAGCCTCGTATGTAAGTTCCCTTTGCTTATTAAANCTGCCACCT-- --------ACCAACCTGGAGTGGCCTGCCTC-----------------------TTTCTTCGGTCTCTCCCTGCCCTCTG CGTA-CGGGGGCCGGTTTCAGATTACACCCGGGAAGCTCCCGAGGGGGTTGCGAACCAACA------------------- ------------------------------------------------ >Canis_familiaris ATATTCCTAGAAGATGTTAAAACAGCAGAAAGCAGGATATCTAGTTTATT---AGCATC---TGTTGGAGAAGGTCAGTG ACAAGA-----CCACTGGTTTACCT--GTGAGCTGGAGCTGG--CGATCAGAGCCTCCTTA---TCCCACCTGTCCCTGG AATGGATG-TCTGCCC-CCATTCCT-CCACTAGGAGCTGTTTCAGGTTCACAGTCTT------GAGAGCGAGGTGGTGTT GAGACCATCTGGACCAAATATGTGACTGAACCCAGTTAAGTCCTCTGTATAAAT--TTAGGATTCTGGG----------- --AGAGATCCATCAGTCTAGTTGCCGCCCAAAACAAGCCTCATATGTAAGTTCCT-TTGCTTATTAAACCTGCCACCT-- --------ACCAATTTGAAGCAGCTCACTCC------------------------TTTTTCAATCTCTCCTTGCCCTCCA TGGA-TGGAGGCCAGTTTCAGGTTTTACCTGGAAAGTTCCCGA---TTTTTCGAACCAACA---GCAATC---CTTTGTA AAACTGCTTCTCCTGAGTAGTTGTTCTGAATTGGGCACTG-GTATGAT >Felis_catus ATGTTGCTAGAAGAAGTTAAAACAGCAGAAAGCAGGCTGTCTAGTTCATT---AGCGTC---TTTTGGAGGA-ATCACTG AGAAGACAGGACTGCTGGTTGACCT--GTGAGCTGGATCTGG--TGATCAAAGGCTTCTCA---CCCCACCCATCCTTGG AATGTACG-TCTGCCCACCACTCCA-CCACTAGGAGCTATTTCAAAGACAGAGCCTT------GAGAGTAAGGTGTTGTT GAGACCATCTGAACTGAAAATGTGACTGAACCTAGTGAAGGTATCTATATAAAC--TTAGGATTCTGGCAGGC---CAGT GCAGAGATCTATTAGTCCTGTGACCACCCACAATAAGCCTCATAGGTTAGTTCCC-TTGCTTGTTAAACCTGCCACCTAC CAATCTGAACCAATCTGAAGTGGCTTACCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTCTCTCCTTGTCCTTCA TGTA-TGTGGGCTAGTTTCAGACTTCACCTGGGAAGCTTCCAA---TTTTGTGAACCAAGA---GCAACC---CTTTGCA AAACTGCCTCTCCTGAGTTG---TTCTGAATTGGGCACTG-TTATGAT >Manis_pentadactyla ATA-TCCCAGAAGAAGCTCAAACAGCAGAAACAAGG---TCTAGTTCATT---AGTATC---TGTTGGAGGAGGTCATCA AGAAGACATGACCACTAGGTGACCTAAGAGAGCTGGCCTCAGG-CAATGGGAAGCTTCTCACCCTCTCCCCTGTCCTTGG AGCATACATTTTGCCCCCATTTCCCACAGCTGGAGCCATTTTCAAGGATGCAGACCTG----AGAGAGCAACGTGTTGTT GAACCCATCTGAACAGTATGCGTTCT----CTCAGGTAAGGCTGCTGTACAAAC--TTAAGATTCTGGAGAGT---GGGT GTGGAGTTCTACTCGCCTTGCAGCTGCCCAAGACAAGTCTCATGGGTAGGTACCC-TTGCTTATTAAAACTGCCACCT-- --------ACCAATTGGGAGTGGCCTGCCTC-----------------------TTTCTTCAGTCTCT-ATTGCCCTCTG TGTA-TAGGGACCAGTTTCTGATTTCACCCAGGGAGCTTCCAA---GTTCA--------CA---G---TC---CTTTGCA AAATTGCTTCTCCTACATTG---TTCTGAATTAGGCCCAG--TATGAC >Sus_scrofa GTATTTCTTGAAGAAGCTGAAGAAACAGAAAGAAGGTCATCTAGTTCACT---AACATC---TGTCAAAGGAGATCACTG AGAGGATGTGTCCATTGAATGACCC--TCAAGCTGTACCCAAG-CAGTAGGAGGCCCTTCACTCCCTCCCCAGTCCTTGG AATGTATGTTCTACCCATCATTTGC-CCACAAGGAACGGTTTCAAGGATGTA-CCTTG----AGAGAGTAAGATGCTATT GAGACCATCTGAACTGAATACATGCCTGAACCCAGGAAAGG---CTATAAAAACTTTTAAGATTCTGGCAGGC---AGAT GCAGAGATCAACTTGTCTTACAGCTGACCAAGACAAGCCTTGGATA-----TCCC-TCACTTATTAAAATAGCCAC---- ---------------------AGCCTGTTTC-----------------------TTTCTTAGGTCTCTTCCTGCACTCTT TGTA--CAAGGCCAGTTTCAGATTTCACCTGGAAATCCCTTCA---TTTTGCAAATCAACA---GCATCC---CTTTGCA AAGTCTCTTCTCTTGAATTGCTGTTCTAAATTGGGCCCTG-GTATGAT >Tursiops_truncatus GTATTCTTTGAAGAAGCTAAAGCAACTGAAAGCAGGTCATTTAGTTCATT---AATATC---TGTTGGAGGAGGTCATGG AGAGGATGTGCCCGCTGGTTAACCC--TCAAGCTGTACTCAGG-CATTGGGAGGCTCCTCACTCCCTCCCGGGTCCCTGG AATGTACCTTCTGCCCACCATTTGC-CCACTAGGAGCTGTTTCAAGGATG-AATCTTG----AGAGAGTAA-ATGCTGTT GAGACCATCTGAACTGTATAAGTGTCTGAACCCAGGTAAGGCT------------TTTAAAATTCTGGCGGGC---AGGT GCAGAGATCTACTGGTCTTGCAACTCACCAAGACAAGCCTGGTGTG-----TCCC-TTGCTTATGAAAATCGCTACCT-- --------ACCAATCTGGAGTGGCCTGCTTC-----------------------TTTCTTAGGTCTCTCCCTGC-CTCTT TGTA--TGGGGCCAATTTCATATTTCACCTCAAAAGCTACTCA---TTTTGTGAAGGAACA---GCACCC---CTTTGCA AAGTCTCTTCTCCTGAGTTGCTGTTCTGAATTGGGCTCTG-GTATGAT >Equus_caballus ATATTCCTGGAAGAAGCTAAAATAGCAGAAAGCAGGTCACCCAGCTCCTG---AGCATC---TGTTGGAAGAGGTCATTG AGAGGACG-------TGGTTGACCT--GTGAGCTTGTCCTGT--CAATCGGAGGCTCCTCAGCTCCCCCTCTGTCCTTGG AATGTGCATTCCACTCACCATTCCC-TCACTAGGAGCTGTTTCAAGGATGCACCTTTGATCAAGAGAGCAATATGTTATT GAGGCCATCTGAATGGTATATGTGACTGAGCCCAGGTAAGGCCTCTAGACAAAC-TTTAAGATTCTGGAGAGC---GGGT CCAGAGATCTACTCATTTTGTGGC-AACTAGGGCAAGCCTCCTAAGTCAAGTTCCTTTGCTTATTAAACCTGCCATCT-- --------ACCAATCTGGAGTGGC-TGTCTC-----------------------TTTCTTCAGTCTCTCCTCACCCTCCG TGTA-AAGGGGCCAGTTTCAGATTAGACCTGGGAAGCACCCAA---ATTTGTGAACCAG-----------------TGCA AAATTGCTTCTCCCGAATTGCCAAGCTGAATTGGGCTCTG-GTATGAA >Ceratotherium_simum ATATTCCTAGAAGAAGCTAAAATAGTGGAAAGCAGGCCATCTAGTTCTTG---AGCATC---TGTTGGAGAAGGTCATAG A---GATGTGACCTCTGGTTGACCT--GTGAGCTGGTCCTGG--CAATCAGAGGCTCCTCAACTCCTCCCCTGTCCTTGG AATGTGCATTCTGCCCACCATTCCC-CCAATAGAAGCTGTTTCAAGGATGCAGCCTTGATCAAGAGAGCAATATGTTGTT GAGGCCATCTGAACAGTATACATGACTGAGCCCAGGTAAGGCCTCTATATAAAC-TTTAAGTTTCTGGAGGGC---GGGT GTGGAGATCTACTCATCCTGTGGC-ACCCAAGACAAGCCTCCTAAGAAAGTTCTC-TTGCTTATTAAACCTGCCACCC-- --------ACCAATCTGGAGTGGTACGTC-------------------------TTTCTTAGGTCTCTCCCTGCCCTCTA TATA-TGGGGGCCAGTTTCAGATTTCACCAGGGAAGCTCCGAA---GTTTGTGAACCAG-----------------TGCA AAATTGCTTCTCCAGAATTGCCATTCTGAATTGGGCTCTG-GTATAAA >Myotis_myotis NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNN---NNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NATGTATATTTCCCCCACCTGTCCC-CAAATAGGAGCTGTTTTAAGAACATAGCTATG----A---GGTAGTACCATGAT TAGACAATTAGGTCTGCAAATATGACTGAACCCAATTAAGACCTCTATAAAAAC--TTAAGATTTTGGCTGGCAGGGAGT GCAGAGAGCT--------CGCTTTCACTCAAGACAAGCCTGGTATGTAAGTTCCC-TTGCTTATTAAATCTCCCACCT-- --------ACCAATCTGGAGTGGCCTGCCTT----------------------TTTCCTTTGGTCTTTCCTTGCCATCTG TTTATGGGAGGACAATTTCAGATT-CACCTAGGAAGCTCTTGA---GTTTGCAATCTAACA---GGACAC---TTTTGCA AAATTGCTTCTCATGAATTGCCCTTCTGAATTGGTCTCTG-GTATGAT >Rousettus_aegyptiacus NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNN---NNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGGATCTGTGCCAATTAGAGTCTCCTCACCACCTCCCCTGTCCTTAG AATGTATATTCTGCCGACCCTTTCT-CCTTTAGGAGCTGTTTCA-GGCTATAACCGTG----AGATAGTATGGTCTTGTT GAGACC-TCTGGATTGAACATATGGCTGAACCCAGTTAAAGCTTCTATATAAACATGTAAGATTTTGGTAGGC---GGGT ATTCAGATCTA-TGCTTTTGCAGCTGCTCCAAACGAGCCTTGTATATAAATTCCC-TCACTTATTAAATCTACCACCT-- --------ACGAATCTAAAGTGGCCTGTCTT-----------------------TTTCTTTGGTCTCTCCTTGTCCTCTG TTTATAGGAGGCAAGTTTCAGATTTCACTTGGGAAGCTTGTGA---GCTCACAAACTAACA---AGAGCC---CTTTGCA AAATTGCTTTTC-------------CTGAATTGGGTTCTA-GTACTAT >Condylura_cristata GTATTCCTCGAAGAAGCTAAAACAACAGGAACCAGGTTAACTAATTCGTT---AGCACA--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------CCTTGCC A-TTGTTTTCCCCAGAATTGTCTTTCTGA----GGTACTGCCTACAAT >Erinaceus_europaeus ATATTCCTAGGAAAAGCTAAAATATAAAAAATCAAGTTA--------ATT------GTA--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------CTTTGAA AAATGGCTTCTCTTGAATGGTTGTTTTGAGCTGGACACTA-TTTTTAT >Homo_sapiens ATGTTCCTAGAAGAAGCCAAAGCAGCAGAAATCAGGTCATCTAGATCATT---AGCACC--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------CTTTGCA AAATTGCTTCTTCTGAATTGCTTTTCTGAATTGGGTTCTG-GTATGAT Dog15_LTR >MER57LA -------------------------------------------------------------TGTGTTAAAAGATAAACTG ----------AGGCATATTAAAAA-TTTTAAGAGTTTATTTGAGC-AAAAATCGATTCAAATCAGGCAGCACCAAACCAG GAAG----TGGTTAGGAGCGCTCCACCGACAGGAGCTAGGGGAAAGACTTTTATAGAGAAGAGGCAGAAGCAAAGCAAGG AAATTATTTGATTGGCT--------------ATAGCTTAAGCAGTTGCCTTATTTGGGAAAGCCTAGTTGGCTGTTTGTG -ATTGGTTGTCCTTAG-GTTTTGA--TTTCTTAACCTTGAGGCATTTACA-GGCTTAGGTTTTGGTTTGCTTAC-GTAGG CTG-CTAAGGCATTAGAACCAC------CTCAGTCTAATGGCCTCCTTGTTTAATTAATTTAACA--------------- ----------------------------------------------- >Canis_familiaris TGTATTAATTATATGTACCTCTGCAAAAAGATACAACTAAGAGACCTTTG---AA-GC-----TGCTAAAAGATAAACTG ----------AGGCATATTGAAAA-TGTTGAG-----TATTGAA--AAATGGTAATTGGAATCGGGCAGAGCCAACCCA- TAAG----TGGTTAGGAGCGCTCCACAGAGAGGAGCTCAGGGAAAAACTTTTATAGGGAAAAG-----------TTATGA AGATTAT-TGATTAGCT--------------ATAGCTCCA--------------------AGTATACTTGGCTGCTTGTG -ATGGATTGTCCTTGAGGTTTTGAT-TTTGTGA-TCTTGAGGCATT-ACA-GGCTTAGGTTTGGATTTGATTAC-TTAGG CCA-GGAGGGCATGAGAGCCAC------TTCAGTCTAATGGCCTCCTCGCTTAAATAATTTAACA---CAAC---TAAGC TCAACTT-AGTGGTGACTGTCAAAAGCCTTCCTGGAAAAT-ACTTTG >Felis_catus TTGTTAAATTATGCACACCTCCACAA--AAATACAACTCAGCGATCTTTG---AA-GC-----TGTTAAAAGATAAACTG ----------AGGCATATTAAAAA-TGTTGAG-----TTTTAAGC-AAAAGTGGATTGAAATGCACCAGTGCCAAGCCGT TAAG----TGGTTGGGAGCTCTCCACAGACAGGGGCTCG--GAAAGATTTTTATAGAGAGAAAGCAA------AGTAAGA AAATTGT-TGATTAGCTTATTAATATTATTGATAACTTAA--------------------AGTCTAGTTGGTCGTTTGTG -ATTGGTTGTCCGTAGGGTTTTGTTATTTGTGA-CCTTGG-----------GGCTTCGGTTTTGGCTTCATTAC-TTAAG CTC-CCAGGGCATGAGAGCCAC------TTCAGTCGAATGGCCTCCTTGTTTGATTAATTTAACG---CGGC---TAAAC TCAACTC-AGTCACGCCTGTCAAGAGCCTTCCTGGAAAAT-ACTTTG >Manis_pentadactyla TGGTTAAATCCTGCACACATCTGCAAAGAGATACAACTGAGAAGTCTTAA---AT-GC-----TGTTAAAACATAAAGG- ----------AGGCATGTTAAAAA-TTTTATGAGCTTAGTTGAGC-AAAAATCTATTGGAATCAGGCAGTGCCAAATGG- AAAG----TGGTTAGGAGCGCTCCACCAATAGGAGCC----GAGAGACTTTTACGGAGGAAAGGCAGAAGCACAGTGAGG ACATTAT-TTATTGGCT--------------GTAGTTTAA--------------------AGCCTAGTT----GCCTGGG -ACTGGTTGTCCTTAGCATTTTGAT-TTCACAA-CATTGAGGCATTTACA-------GGCTCTGGTTTACCTAC-GCAGG CTGCCCAGGGCATTACGGCCAC------CTCACTTTAAGGACATCCTAGCTTAATTAGTTTAACA---CAGC---AAAGC TCAACTC-AGCCATGCCTGCTAAGGGCCTTTCTGGAAAGT-ACTTTG >Sus_scrofa TGGTTAAATCATACACACCTCTGCCACAAGATACAACAAAGAGATCTCTG---CA-GC-----TATGAAAAAAAAGAAAG AAAAAAAAACAGGCCTATTAAAAT-TTTTAGGAGCTTATTTGAGC-AAAAATATATTGGAATCTGGCCATGCCAAACCA- GAAG----TGGTTACAATCACTCTACCCACAGAAGCTTG-GAAGAGAATTTTACAACGAAAAGGAAG------AGTAAAG AAATTAT-TGATTGGCT--------------ATGTCTTAA--------------------AGCCTAGTCAGCAGTTTGTG -ATTTGTTAACCTTAG--TTTTGAT-TTCATAA-CCCAGAGGTATTCACA-GGCTTAGGTTTGGGTTTGATGACATTAGG CTG-CCTGGGCATTAGAGACACCGCGGTCGCGGTCTCGTGGCCTCTGAACTTAATTCGCTTAACA---CAAT---TAAGC TGAACTC-AGTCATGCCTTTAAAGCCCCTTTCTTGCAAAT-ATTTTG >Tursiops_truncatus TGGTTAAATTATGCACACGTCTGCAAAAGGATACAACCAAGAGATCACTG---AA-GC-----TGTTAAAAGATAAAC-- ----------AGGTCTATTAAAAAATTTTAGGAGTTTATTTGAGC-AAAAATCGATTGGTATCTGGCAGTGCCAAACCA- GAAGGGGTTAGTTAGGAGCACTCCACCTACAGGAGCTCG-GGAGAGACTTTTATAGAGAAAAGGCAGAAGCAAAGTAAAG AAATTAT-TGACTGGCT--------------ATGGCTTAA--------------------AGCCTAGTTGGCAGTTTGTG AATGGGTTGTCCTTAGCATTTTGAT-TTCATAACCCTAGAGGCATTTATAGGGCTTAAGTTTTAGTTTGATGAC-CTCCG CTG-CCTGGGCACTAGAGCCAC------CTCAGTCCCATGGC--TCTTGCTTAATAATTT--ACA---CAAC---TAAGC TCGACTCAAGTTGTGCCTATCAGACCCTTTTCTTGANNNNNNNNNNN >Equus_caballus TGGTTAAATTATGCACATTTCTGCAAAGAGATACAACTAAGAGATCTTTG---AA-GC-----TGTTTAAAGATAAACTG ----------AGGCATATTGAAAA-TGTTAAGAGTTTATTTGAGC-AAAAATCAATTGGAAT-GGACAGCACCAAACGA- GAAG----TGGTTGGGAGTGCTCCACTGATAGGAGCTCGCAGAGAGACTTTTGTAGAGAAAAGGCAGAAGCAAAGTAAGG GAATTAT-TGATTGGCT--------------ATCGTTGAA--------------------AGCCTAGTTGGCTGTTTGTG -ATTGGTTGTCTTTAGCATTTTGGT-TTTTTTACCCTTGAGGCATTTACA-GGCTTAGATTTTAGTTTGATCCC-TTAGG CTG-CCAAGGCATTAGAACCAC------TTGAGTCTAATGGTCTCCCTGCTTAATTAGTTAAATA---CAAC---TAAGC TCAACAC-AGCCATACCTGTCAAGGGCTTTTCTGGAAAAT-ATTTTG >Ceratotherium_simum TGGTTAAATAATGCACATTTCTGCAAAGATATACAACTAAGAGATCTTTG---AA-GC-----TGTTTAAAGATAAATTG ----------AGGCAAATCAAAAA-TTTTAGGAATGTATTTGAACAAAAAATCAGTTGGAAT-GGGCAGCTCCAAACCG- GAAA----TGGTTAGGAGTGCTCCATAGACAGGAGCTTGGGGAGACATTTTGGTAGAGAAAAGGCAGAAGCAAAGTAAGG AAATGAT-CGATTGGCT--------------ACAGCTTAA--------------------GGCCTAGTTGGCTGCTTGTG -ATTGGTTGTCCTTAGCATTTTGGT-TTTGTGA-CCTTGAGACATTTACA-GGCTTAGGTTTTGGTATGACTAC-TTAGA CTG-CCAAGGCATTAGAGCCAC------CTCAGTCCAACGGCCTCCTTGTTTAATTAATTTA------------------ --AGCTC-CGTCATGCCTGTCAAGGGCTTTTCTGGAAAAT-ACTTTG >Myotis_myotis AGGTTAAATCATGCACACCTCTGCAAAGAGATACAACTAAGGGATCTTTG---CA-GC---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------TAATC TCAACTC-AGTCATGCCTGTCAAGGGCCTTTCTGGAAAAT-ACTTTG >Rousettus_aegyptiacus GGTATCAATTATGCACATCTCTGCAAAGAGCTACAACTAAGGGATCTTTG---TA-GC---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------TAATC TCAAGGC-AATCATGCCCGTCAAAAGCCTTTCTGGAAAAT-TCTTTG >Condylura_cristata AGGTTAAGTGATGCACACCTCTTCCAAGACAGAAAGCTAAGAGATCAATT---TA-AC---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------TAAGC TCAAATC-AGCCATGCCTATCAAGGGTCTTTCTGGAAAAT-GCTTTA >Sorex_araneus TGGTTAAATAATGAGCATCTCCACACTGATACACAACTAGAAGATCTTTG---CAGGA---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------TATGC TCAATTG-AGTCAAGCCTCTTAAGAAACTTTCTAGAAAATAATTTTG >Homo_sapiens TGGATAAATTATCCAAACCTCTGCAAAGGGGTACAATCAAGACGTCTTCA---TA-GC---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------TAAGC TCAACTC-GATGATGCCTGGTAATGGAGTATCTGGGAAAT-ACTTTA Dog16_LTR >ERV54-EC_LTR ----------------------------------------------------------------------TGTTAAAAAC AAG-ACAACAGGCCCAAAATGGAGTCACTTATGCTAAGC----------------------------------------- -----------------------------------------------------------CCCACGTCACCAAACCGAGAC -------------TTAACTTAATTACAGTTTCGGC----------TCTCCCAGAAATGGAATCTTAAACCAGTCAATCAG GAATCACCTGATCAGCACTAGTTAGGTAATCTGCCTGATAGACCCCTGCCATCCCCTAAAGGAAAGTAACCTTGCAATAA CCAATCCACTTTTTTGCCTAGTATAACTTCCTTGTTCCTGCTCCCTTCTGCCTATAAAAGTCTTTCATTT-----TGTAC AGCTCCTCGGAGCTCCTTTCT----ATCTGCTAGATTGGATGCTGCCCAATTCATGAATCATTGAATAAAGCCAATAAGA TCTTTA-------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AA ATTTACTCAGTTGAATTTTG---TTTTTTAACA----------------------------------------------- ---------------------- >Canis_familiaris TTTAAGGAAAAAAAACACAACTGTACTCTATCATAAGGCCGAAATGGCTTTTTGCTAAAT---CAGT---TGTTAAAAAC AAG-ACAACAGGCTCAAAATGGAGTCACTTATGCTAAGC----------------------------------------- -----------------------------------------------------------TCCACATCACCAAATACAG-- ----------------CCTTAATTACACTTTTGGCC---------TCACCCAGAAATGGAATCTTGGAAC-GTCCGTCAA GAACTACCTTATTAGCACTAGTGAGGTCATCTGCCTGACAGACCACCCCCATCCCCTAAATGAAAGTGATCTTGCCACAA CCCATCCACTTTTTG--------------CCTTTTTCCCACTCCCTTCTGCCCATGGAAGGCTTTCATTT-----GGTAC AGCTTTTTGAAACTCCTTTCT----ATCTGCTAGATGGGATGCTGCTAGAATCACGAATCATTAAATAAAGCCAGTAAGA TCTTTA-------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AC ATTTACCCCATGGCATTTTG---CGTTTTAATA---TTTT---GAATTTCT----------------------------- -------------------TCA >Felis_catus GTATAGAAAAAAAA----AATTATATTCTACCA-AAGGCAGAAACAGCTTTTAGCTAAAT---CAAT---TGTTAAAAAC AAG-ACCACAGGCTCAAAATGGAGTCACTTAAGCTCAGC----------------------------------------- -----------------------------------------------------------TCCATATCACCAAACTGAG-- ----------------ACTTAATTACACTTTTGACC---------TCTTCCAGAAATGGAATCTTAA---AGTGAATCAG GAACTACCTGATCAGCATGAGTGAGGTCATCTGCCTGATAGACCCCTGCCATCCCATAAAGGAAAGTGGTCTTCCCACAA CCATTCCACTTTTTG--GCAGTATAATTTCCTTGTTCCCACTCCCTTCCGCCTATAGAAGTCTTTCATTT-----TGTAC AGCTTTTGGAAGCTCCCTTCT----GTCTGCTAGGTAGGATGCTGCTCGAGTCATGAATCATTAAATAAAGCCAGTAAGG TCTTCAATTTTTTTAACCTTTATTTATTTTTGAGAGAGAGAGAAAGTATGAGCAGGGAGGGGCGGAGAAAGAGAGGGAGA CACAGAATCTGAAGCAGGATCCAGGCTCCCCACTGTCAGCACAGAGCCTCATTCAGGGCTCAAACTGGAACTCTCCAACG GTGAGATCATGACCTGAGCCTAAGTCCGATGCTTAACTGACTGAGCCACCCAGGCGCCCCAAGCCAATAAAATCTTTCAA ATTTACTCAGTTGAATTTCG-------TTAATA---CATT---GAATTTCTTCGGTTATTAA--GTTATCT-------GG AATGAAACTTC--TTTTTCTCA >Manis_pentadactyla TTAAGAAAAAAACA--------CTATTTTACCATAAAGCAGAAGGGGCTTTTTGCTAACT---CAAT---TGTTAAAAAC AAG-ACAATTGGCCCAAAATGGAGTCACTTATGCTAAGC----------------------------------------- -----------------------------------------------------------CCCACGTCACAAAAGGGAGCT -------------TTACCTTAATTTCACTTTTGTCC---------TCTCCCAGAAATGGAATCTTAAGTCAGTAGATCAG GAACTACC------------GTGAGGTA---TTGCTGATAAACCCCTGCTATCCCTTAAAGGAAAGTGACCTAGCCACTA CCAATCCACACTGTG--CTAGTACAACTTCTTCA-TCCTGCTCCCTTCCACCTAGAAAAGTCTTTCATTT-----TGTAC AGCTCCTTGGAGCTCCTTTCTAGTAAACAGCTGGATAGGATGCTGCCAGGTTCATGGATCGTTGAATAAAGCCAATATGA TCTTTA-------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AA ATTTACTCAGTTGAATTTTGTTTTTTTTTAACA---CTTT---GAATTTCTTTGGTTATTAAAAGCTTTCT-------GG GATGAAACTTC--TTTTTCTCA >Sus_scrofa TTAAGAAATA---------------------------GCAGAAAGAGCTTTTTGCTAAAT---AACT---TGTTAAAAAT AAGAAAAATAGGCCCAAAATGGAATCACTTATGCT--------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------TCTCTCAGAAACAGAATCTTAACCTAATCAATTGG GAATCA-CTGATCAGCACTAGTGAGGTAATCTGCCTGAAAGACCTCTGCCATCCCCTAAAGAAAAGTGACCTTGCCACAA CCAATCCACTTTCTG--CTTGTATAACTTCCTTG-TCCCACTCCCTTCTGCATGTAT--GTCTTTAATTT-----TGCAT AGCTCCTTGGAACTCCTTTCT----AACTGCTAGATGGACTGCTACCTGATTCACAAATCCTTGTATAAAGCAAATAAGG TCTTTA-------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AA ATTTACTCAATTAAATTTTGTT-TTTTTTAACA---CTTT---GAATTTCCTTGGTTGTTAATAGATTTCTTAAAAAAGA AAAAAAAAGAAAATTCTTTTTC >Bos_taurus TTAAGAAAAAA-------------GTTCTACAATAA-GTGAAAAGAGCGTCTGGCTAAGT---CAAT---TGTTAAGAGC AAG-ACAACAAGCCCGAATTGGAATCACTTATGCAGACCTGGGTTCAACCCCTGGGTCAGGAAGATCCCCTGGAGAAGGA AATGGCAACCCACTCTTACCTGGAAAATCCCATGGTCAGAGGAGCCTGGTAGGTTACAGTCCATGGGGTCAAAAAGAGTC GGACACGGCTGAGTGACTTCACTTTCACCTTTCACCTTTCATGCTTCTCCCAGAAATGAAATGTTAACCTAATCAATCAG GAATCTCCTGATCAGCACTAGTGAGACAACCTGCCTGATAGAGACCTGCCATCCTTTAAAGAAAAGTGACCTTGCCACAA TCAATCCACTTTTTG--CTAGTATAATTTCCCTG-TCCCACTGCCTTTTGCCTATATCAGTCTTTAAACTTTGTATGGAT AGCTCTCTGGAGTTCCTTTCT----ATATGCTAGATGGGAGGCTGCCTGATTCATGAATCAATAAATGAAGCCAATAAGA CTTTAA-------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AA ATTTACTCAGTTGAATTTTA--------TAACA---CATT---GAATTTCTTTGATTGTTAAAAGTTTTCT-------GG AATAAAACTTC--ATTTTCTTA >Myotis_myotis TTAAGAAGAAAAGT---------GACTCTGCTACAAGGCAGAAAGAACTTCTTGCTAAAC---CAGT---TGTTAAAAGC AAG-ACAACAGGCCCCACATGGAGCAACTTATGGGAAGT----------------------------------------- -----------------------------------------------------------CCCATGTCACCAAAAGGAG-- ------------------ACAATCACACCTGCAGCC---------TCTCCCGGAAATGGGAGGGTAAACCAGTCAGTGAG GAGCAGCCTGGCCAGCACT-GTGAGGGCATCTGTC---------------ATCCCC--GAGGAAAGTGTCCTGGGCACTG -CAGTCCAAGCTCTG---CTATAGGACTTCCTTGTTCCCACCTCCTTCTGCCCAGAACAGTCTCTCATT------GGCAC AGCTCCTCGGAGCTCCCTTCT----ATTGGCTGGATGGGATGCTGCCAGAGCCATGAATCACTGAATAAAGCCAATA--- TCTTTA-------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AA ATGTACTCAGTCCAATTCTGG--TTTTTTAACA---C-TT---GAATTTCTTTGGCTCTTAAATGTTTTCT-------GG AATGAAACTTCTTTTTTTCTCA >Rousettus_aegyptiacus TTAAGAAGAAAA---------TGTATTCT-CCATAAGGCGGAGAGAGCTTTCCGCTAAAT---CAGT---TGCTAAAAAC AAG-ACAACGGGCCCCAAATCGAGTC------------------------------------------------------ ------------------------------------------------------------CCATGCCACCAAAAGGAG-- --------------------AATTACACTTACGACC---------TCTCCCAGAAATGGAATCTTAAACCAGTCGGTCAG GAGCCACCTGATCAGCACCAGCGAGG---------------------------CCCTAACAGAAAGTGACCTCGCCACAG GTGACACACCTTCTG---------CATCTCCCCG-TCCTGGCCACTTTGGCCTAGGACAGGGTTTCACTT-----CGCAC TGCGCCTCGGGGCTCCTTGCT----CCCTGCTGTATGGGGTGCTGCCCGGCTCAGGAATCGTTGAATAAAGCCAGTAAGA TCTTTC-------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------GA ATTTGCTCAGTTGAATTTTG---TTTTCTAACA---CATT---GAACTGCTCTGGACATTAA--GTTTTCT-------GG AATGAAACTTC--------TCA >Equus_caballus TTAAGAAAAAAA---------TGTATGCTATTATAAGGCAGAAAGAGCTTTTCGCTAAAC---CATT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------GAATTTCTCTGGTTGTGAGAAGTTTTCT-------GG AATGAAACTTC--TTTTTCTCG >Ceratotherium_simum TTAAGAAAAAAA---------TGTATTCTACTATAAGGCAGAAAGAGCCTTTTGCTAAAC---CATT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------GAATTTCTCCAGCTGTTAGAAGTTTTCT-------GG AATGAAACTTC--TTTCTCTCG >Condylura_cristata TTAGAAAATAA----------CTTATTCTGTCATAAGACAGGAAATGTTTTTTTCTAAAT---TATT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------CAATTTCTCAGGTTATTAAA-ATTTTCT-------GG AATGAAACTTC--------TCA >Sorex_araneus TTAAAAAAAAA-----------------------AAAGCAGGAAAAGCTTTTTGTCAACT---CATT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------AAATTTTCTGAGTTTTCAAAAGTTTTCT-------GA AATGAAATTTC--TTTTTCTCA >Homo_sapiens TTAAGAAAAAA----------TGTATTCTACCATAAGGCAGAAGCAGCTTTTTGCTAAGT---CATT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------GAATTTCTCTGGTTGTTAAAAGTTTTCT-------AC AATGACACTAC--TTTTTCTCA Dog17_LTR >MER57LA -----------------------------------------------------------------------------TGT TAAATTAATTAAACAAGGAGGCCATTAGACTGAGGTGGTTCTAATGCCTTAGCAGCCTACGTAAGCAAACCAAAACCTAA GCCTGTAAATGCCTCAAGGTTAAGAAATCAAAAC-CTAAGGACAACCAATCACAAACAGCCAACTAGGCTTTCCCAAATA AGGCAACTGCTTAAGCTAT------AGCCAATCA---AATAA--------------------------------TTTCCT TGCTTT---------GCTTCTGCCTCTTCTCTATAAA-----AGTCTTTCCCCT-----------AGCTCCTGTCGGTGG AGCGCTCCTAACCACT----------------------TCCTGGTTTGGTGCTGCC---TGATTTGAATCGATTTTTGCT CAAATAAACTCTTAAAATTTTTAATA-------------------------------------------------TGCCT CAGTTTATCTTTTAACACA------------------------------------------------------------- -- >Canis_familiaris AAGTCTGTT------G-TTTTG-AAATCTTCAAGTATTCAATTTAGA-AAAAATTATTGTTTGACA---AGAAT---TGT GAAGTTAATCAAACAAGGAGGCCATTAGATTGAAGTGGCTCTTATACCATGGAGTTGTGTGTAAGCAAACCCAAATCTAA ACCTG-AGATCCTTCAAGGTGATAGAATCAAAATGCTAAGGACAATTAATTACAAAGAGCCAATTAGACT---------- ----------TTAAGCTAT------AACCAAACA---AATAG-------------------------CTTCTTTTTCCCC CTTTTT----------CTTCTGTACTTTGTCTATACA-----AGTCTTTTACCT-----------GGCTCCTGTCCTCAG AACACTCCAAACCACT----------------------T-CTGGTCTAATATTGCC---CAATTCAAATAGAATTTTACT CAAATAAAG--TTAAAATTTTTAATA-------------------------------------------------TGCCT CAAATTATCTTTTAAT-------ATCAT---GAAATAC-AGAATGTATTTTAAAGGCATATTAAATTTTATTCCAAATGA AG >Felis_catus AAGTTTGCT------G-TTTTATAAATCTTCAAGCATTCAGTTTAGATTAAGTTTATTGTTTGATG---AGAAT---TGT GAAGTTAATTAAATAAGGAGATTCTTAGATGAAAGTAGCTCTAATGCCAGGGAGGTCTGTGTAAGCAAACCCAAATCTAA AGCTGGAGGTCCTTCAAGGTTACAGAATCAAAATGCTAAGGACAACCAATTACAAACAGCCAATGAGGTT---------- ----------TTAAGCTCT------TGCCAATCAGCCAATCAAATGCTGCTGCTGCTGCTGCTGCTGCTTCCCCTTCCCC CTCTCTTCTCTTATTGCTTCTGCACTT----TATACA-----AGTCTTTTAACT-----------GGCTCCTGTCCTTGG AACACTCATAACCATT----------------------T-CTGGTTTTATGCTGCC---TAATTCAAACAGGTTTTC--- --AATAAACTCTTAAAACTTTTAATTTTTTTTAATGTTTATTTATTTTTGAGACAGAGAGACAGAGCATGAACGGNNNNN NNNNNNNNNNNNNNNN-------NNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NN >Manis_pentadactyla AAGTCTGCT------G-TTTAATAAATCTTCAGGTATTTAATTTAAA-TAAGTATATTATTTGAGG---AGGAT---TGT GAA--TGAACAAAGGAGAAGGCCATTAGATTAAAGTGGCTCTAATGCCA-GGAGGTCTACATAAGCAAACCAGAATCTAA GCCTGGAAATGCCTCA--GTTGTGAAATC-AAATGCTGTGGA-AACCAATCATAAACAGCCAACTGGGCT---------- ----------TTAATCTGT------AGCCATTGA---AATAA--------------------------------TTTCTT TTTTTA--------TGCTCTTGCACTTGCTCTGCATA-----AGTTTTTTGCCT-----------GGCTCCTGTCCTCAG AATGCGCCTAATCACT----------------------T-CTGGTTGGGT-CTGCA---TAATTCAAATCAATTTTTGCT CAAA-------CTTAAATTGTTAATA-------------------------------------------------TGCCT CAGTTTACCTTTTAAC-------AGGGT---GAAATACAAAAATGTATTCTAGGCGTATATTAAATTTTATCCCAAATGA AG >Equus_caballus AAGTCTGCT------G-TTTTATAAATC---AAGTGTTCAATTTAGA-TAAGTTTATTGTTTGAAG---AGAAT---TAT TAAGTTAATTAAACAAGGCGGCCATTAGATTGAAGTGTCTCTAAAGCCGTGGAGGTCTACATAAGCAAACCAAAATCTAA GACTGGAAATGCTTCAAAGTTACAAAACCAAAATGCTAAGGACAATCAATCACAAGTAGCCAACTAGGCT---------- ----------TTAAACTAA------GGTCAATCA---AATAA-------------------------------TTTTCCT ATTTTT----------CTTCTGCACTTTCTCTATACATTGTCGGTCTTTCCCCC-----------GGCTCCTGTCCTCAG AATGTTCCTAACTACT----------------------T-CTGGTTTGGTGCTGCCAATTGATTCAAATTGACTTTTGCT CAAATAAACTCTTAAAATTTTTAATA-------------------------------------------------TGCCT CAGTTTATCTTTTAAC-------AGGGT---GACATAC-AAAATGCATTTTAGGTGTATATGAAATTTTATCCCAAATCA AG >Ceratotherium_simum AAGCCCGCT------G-CTTTACGAATCTTCAAGTATTCAATTTAGA-TAAGTTTATTGTTTGAAG---AGAAT---TAT TAAGTTAATTACACAAGGAGGCGATTAGATTGAAGTGGCTCTCAGGCTGTGGAGGTCTATGGAAGCAAACTAAAGTTT-- GACTGGAAATGCCTCCAAGTTACAAAATCAAAATGCTAAGGACAACCAATCACAAATAGCCAACTAGGCT---------- ----------TTAAGCTAT------AGCCAAT-A---AATAA--------------------------------TTTCCC TTTATT--------TGCTTCCACACTTTCTCCATACAGAATAAGTCTTTCACCT-----------GGCTCCTGTCCTCAG AATGCTCCTAATTACT----------------------T-CTGGTTTGGTGCTGCC---CAATTCAAATTGGTTTTTGCT CAAATAAACTCTTAACATTTTTAATA-------------------------------------------------CGCCT CAGTTTATCTTTTAAC-------AGGAT---GACATAC-AAAATGTATTTTAGGTGTATATTAAGTTTTATCCCAAATGA AG >Condylura_cristata AAGTCTGCT------G-CTTTATAACACTTCAAGCA-TCACTTTATG-TAAGTTTAATGTTTAAAG---AGAAT---TGT TAAATTAATTAAACAAAGAGGCTATTAGA------TGGCTCTAAAGCCACAGAAGCCTAAATAAATAAACAGGAATACAA ACCTGTAAATG-TTCAAGGTTATAAAATTAAAATGCTATGAACAGCACATT----------------GCT---------- ----------TTAAGCTAT------ACTACATCA---AGTGA--------------------------------TTTCCC TTTTTC--------TGTCTCTGAACTTTCTCTATGTAAGCCCCTCTTTTTATCTCTGAGGGATGGGGGTCAAGCCCCCAC CTTGACTCTAAGGGGTGGGGGTGTGGGAAGGGTGGGAGCACTGGCTTGCCACTGCC---CAATTTGAATTGATTCTTGGT CGAATAAAA-CTTAAAAAATTTAATA-------------------------------------------------TAACT CAATTTATCTGTTAAC-------AGGGA---GAAATCC-AAAGTGCATTTTTGGTGTATATTAAATTGTATCTCAAACTG AG >Sorex_araneus AAATATGCA------G-CTTTATAAAACTTTAAGAATTCACTTTAGA-TAAGCTTAATGTTTGAAG---AGATT---TGT -AATTAAATTAAA-----AGTCCATTAGA-----CTGGTTGTAGTGCCCTAGAGGTCTAAGTTAGCAAGCCCAAATCTAA GTCTGTAAA--CCTCAAGGTTA-GGAATCAAAACGCCAAGGGCAACCAATTAC----AGTCAACTAGTTT---------- ----------TTCTGTTTTGCATCAAATCAATCA---TGAA---------------------------------TTCTCC CACTTC---------------AAACTTATTTAAAAAAAT---AACCTTCCCTCA-----------AATTTTTTTC----- -------------ATT----------------------T-CAGGTTTGGCACTGAC---CAATTCAAATAGATTTTTGCG CAAATTTA---TTAAAACTTGTAATA-------------------------------------------------TGCCT T-GTTAGTCTTTTAAG-------AAAGT---GATATAT---ACACAACTTTAGCTGTATACTAAATTGCATTGGAAATGA AC >Sus_scrofa ATGCTTGCT------G-TTTTATAAATCTTCAT-TGTTGAATTTAGA-TGAGTTTAATGATTGAAG---AGGGA------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------AAAACACAAAAATGTAATTTAGATATATATTAAATTTTATCCCAAATGA AG >Bos_taurus AAGTTTACT------T-TTTTATATATCTTCAAATATTCAGTTTAGA-GAAGTTTAATATTTGAAA---AGGGA------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------AAAATAC-AAAATGTATTTTTGGTGTATATTAAATTTTATCCCAAATGA AG >Myotis_myotis AAGTCTACT------A-TTTCATAAATCTTAAAGTATTCCATTTTGA-TAAATTTAATGTT-AAAG---AAGGC------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------AAAATAC-AAAATATATTTGAGGTATATATTAAATTTTATACCAAATTC AG >Rousettus_aegyptiacus AAGTCTGCT------GTTTTTATAAATATTCAAGTATTCAATTTATA-TAAGTTTAATGTTTAAAG---AGGTC------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------AAAATGC-AAAATATA-TTAAGGTGTATATTAAATTTTATCCCAAGTGC AG >Homo_sapiens ATGTTTGCTCTTTCAG-TTTTATAAATCTTCATGTATT-----------------------TGAAG---AAGGT------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------AAGATAT-TAAATGTATTTTAGTTGTATATTAAATTTTACCCCAAATGA CA Dog18_LINE >L1MA9_3END -----------------------------------------------------------------------GGAATCTAA AAAAGTCAAACTCATAGAAGCAGAGAGTAGAATGGTGGTTGCCAGGGGCTGGG-----GGGTGGGGG------------- ---AAATGGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCT----GGAGATCTAATGT -ACAGCATGGTGACTAT-----AGT---TAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAG--ATCTTAA GTGTTCTCACCACACA--CAAAAAA---ATGG-TAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAAT CATTTCACAATGTA------TACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATT ATACCTCAATAAAGCTGGAAAAA--------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------- >Canis_familiaris TAGAA-CAAAAAGT---GGTCTCTCCCCTTAGGAAATTTATTATCTAATT---AGGGAAGGAATATGTT----------- -AAGC-CAAATTCGTAGATACAGAGAACAGATTGGTGGTTGCCAGAGACAGG-------GATGGGTG------------- ---AAATGGGTGAAGG-GGGACAAAA-TTACAAACTTCCAGTTAT--AAAATAAATAAATAAGTCAGGGTGAGGTAATGT -CCAGCATGGTGACTATCTAGCAGT---TAA------TGTATTATAGATTTGAACATTGTTGAGAGAATAG--ATCTTAA AAGTTCTCATCAGAAG--AAAAAAA---TTCT----CTATGTGTAGTGGTGGA--ATTTAACTAGACTTAGTGTGGTGAT CATTTTGCAATACATATACACATAAATATCAAATCAATATGCGATATACCTGAAACTAATATCA-TGTTGTATGTCATTT TT--------------------------AAAAAGAATGTGTT-------------------------------------- ---------------------------------------------------------------------TATAACTAG-C AATAAGTAATACAAAGACTTTTTTAATGTTTTATTTATTTTTTTAAAGATTTATTTATTTATTTATCCATGATAGACAGA GAGAGAGAGAGAGAGGCAGAGACGCAGGAGGAGGAAGAAGCAGGCTCCATGAAGGGAGCCCAACGTAGGCCTCAATCCCG GGACTCCAGGATCACGCCCTGGGCCAAAGGCAGGCACTAAACTGCTGAGCCACCCAGGGATCCCTACAAAGACTTTTACA TATGATACTGAAACTTTAAAT >Felis_catus TAGAA-TAAAAAG------------CCCTTGAGGAGCTCGTTATCTAATC---AGACAAAGGATGTTTT----------- -AAAC-TAAGCTCATAGATGCAAAGAACAGATTGGTGGGTTCCAGAGGCAGGA------GTTGGGTG------------- ---ACATGGGTGAAGG-GAGCCAAAA-TTACAGACTTCCAGTTGT--AAGATAAATAAGTCA-----GGTGATT--ATGT -ACAGCACGGTGACTAG-----AGT---TAATAATACTATATTTCATATTTGAAAGGTGCTGAGAGAATAG--ATCTTTC AAGTTCTCGTCAAAAG-AAAAAAAA---TTCTACAACTATGCGTAGTGATGGG--TGTTAACTAGACTTACTGT-GTGAT CATTTTGCAAAATATATACATACAAATATCAAATCATTATGTTGTATACCTGAAACTAATATAA----TGTATGTCAATT ATACCTCAATTAA-------------AAAAAAAGAATGTGTT-------------------------------------- ---------------------------------------------------------------------TATAATTAG-C AACATG-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------AAAGGCCTTTAAA CAAGATACAGGAGCTTTAAAT >Manis_javanica TAGAA-TAAAAAGT---CATCTTCGCCCATAGGGAACTCATTATCTAATA---AAGGAAAGAATATGTT----------- -AAAC-CAAATTCGTAGATACAGAGAACAGATTGGTGGTTGTCAGAGGCAAGGGTTGAGGGTGGGCA------------- ---AAATACATGAAGG------------TATAAGCTTCCAGCTAT--AAAATAAAAAAGTTCT----GGGGATGTAATGT -ACAGCATGGCAGCTAT-----AATATATAATAATACTATATTGCATATTTTAAAATTGCTAAGAGAGCAA--ATCTTGA AATTTCCAATCACAAG-GAAAAAAAAGATTCCATAACTATGTATGATCATGGA--TTTTAACCAGACTTATTGTGGTGAT CATTTCACAAAATATACA------AATATCAAATCATTATATTGTACACATTAAACTATTATAA----TGTATGTCAATT ATACCTCAATTTTT------------TAAAATAGAAA--GTT-------------------------------------- ---------------------------------------------------------------------TATAATTAGGA AGT----------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------AGAGGCTTTTAAA AAAGATGCAAAAGCTTTAAAT >Sus_scrofa TAGTA-TAAAAAGT---CATCTTTACCCTTGGGGAACTCATTATGAAATT---AAGGAAGGAATGTGTT----------- -AAAC-CAAACTCAGAGATACAGAGAATAGACTGGTTGTTGGCAGAGGTGGGG----GCAGGGGATA------------- ---AAATAGGTAAAGG-CAGTCAAAACTTAGAAATTTCCAGATAT--AGGATAAATAAGTCCT----GGGGATGTAATGT CACAGCATGCT-----------AGT--------AAACCACATTGCCTATTGGAAAGTTGCTAAGGGAGTAGTAATTTTAG AAGTTCTA-CTACAAG-AAAAAAAA---TCCTATAAGTATGTATAGCGACAAA--TTTTAACTAAGCTTATGGTGATGAT CATTTTGCAGTATATGCA------AATATAAAATCATTGTGTTGTGCCCTTGAAACTAATGTAA----TGTATGACAATT ATACCACAACAAA-------------AAGT-------GTGTT-------------------------------------- ---------------------------------------------------------------------GATAATTAG-A AATGCA-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------AGAGGCCTTTAAA TAAGATTCAGAAATTTTGAAT >Tursiops_truncatus TAGAA-TAAAAAGT---GGTCTCTGCCCTTGGGGAACTTATTATGTTATT---AAGGAAAGAATGTGTT----------- -AAAC-CAAGCTCATAGATACAGAGAATAGATTGGCAGTTGGTAGAGGTGGGA--TGGGGGTGAGTAAATGGGGAGGGTG AGTAAATGGGTGAAAG-GAGTCAAAACTTACAAACTTCCAGTTAT--AGAATACAT-AGTCAT----GGGGATGTAGTGT CACAATGTGGTGACGAT-----AGG---TAGTAA-ACTGTGTTGCATACTTGAAAGCTGCTAAGAGAGTAGGAATCTTAG AAATTCTCATCACAAGAAAAAAAAG---TTCTGTAACTATGTGTGGTGACGAA--TGTTAACTAGGCTTATTGTGGTGAT TTTTTTGCAATATATAC-------AATATCAAATCATTATGTTTTACACCTGAAACTAATATAG----TGTATGTCAATC ATACTTCAGTAAA-------------AAC--------GTATT-------------------------------------- ---------------------------------------------------------------------TATAATTAG-A AATGTG-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------AGAGACCTTTAAA TAAGATTCAGAAACTTTGAAT >Equus_caballus TAGAA-TAAAAAGT---GGTCTCTGTCCTTGGAGAACTCGTTATCTAAGT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------AGGGAAAGAATGTGTT-------------------------------------- ---------------------------------------------------------------------TATAATTAG-A AATATG-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------AGAGGCCTTTAAA TAAAATTCAAAAACTTTAAAT >Ceratotherium_simum TAGAA-TAAAAAGT---AGTCTCTGCCTTTGGGGAACTCATTATTTAATT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------ATGGAAAGAATGTGTT-------------------------------------- ---------------------------------------------------------------------TATAATTAG-A AATATG-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------AGAGGCCTTTAAA TAAAATTCAGAAACTCCAAAT >Myotis_myotis TACAAATAAAAAGGAGAGGTCTGTGCCTTTGGGGAATTCATCATCTAATT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------AGGGAAAGAATGTATT-------------------------------------- ---------------------------------------------------------------------TATAATTAGAA AAAATG-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------AGAGACCTTTAAA TAAGATTCAGACACTTTAAAG >Rousettus_aegyptiacus TGAAA-TAAAATGT---GGTCTCTGGCCTTGGGGAACTCATTATCTAATT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------AGAGAAAGAATGTGTT-------------------------------------- ---------------------------------------------------------------------TATAATTAG-A AATATG-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------AGATGCCTTTAAA TAAGATTCAGAAACTTTAAAT >Condylura_cristata TAAAA-TAAAAAGT---GATCTCTGCCTTTAGGGAATTCATTGTCTAATT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------AGGAAAAGATTGTGTT-------------------------------------- ---------------------------------------------------------------------TGTAATCAG-A AATATG-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------AGAGGCCCTTAAA TGAGGTTCAGAAACTTTAGAT >Sorex_araneus TTGAG-TAAAAAGT---GATCTCTG-CCTTGGGGAACCCATTGCC-AATT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------AAAGAAAGAATTCTTT-------------------------------------- ---------------------------------------------------------------------TACAATCAG-A AATATA-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------AGAGAGTTTTAAA TAAGAGATAAAAATTTTAAAT >Ictidomys_tridecemlineatus TAGAA-TAGAAGGT---GGCCTCTGTCCTTGGAGATCTCAATATGTAATT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------AGGTAACATATGTTTT---TGTAGGACATGGGATGCTGCTCCACATCAGATGGT GGCTTAGCATACACAATACCCTAGGTTCAATCCCAGCACTACTCCCCAAAAAACTAAAGAGAATGTGTTTATAGTTAG-A AAT----------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------GGAGGATTTTAAA TCAATTTCAGAAACT--AGAT Dog18_LTR >CARLTR7 ---------------------------------------------------------------------------TGTAG GGGCCGAGGGCAGGCCGCCCCAAG--ATGGGCCACTTTGGCATGAAGATTATTTTGAGCTGAAGGCAATCGAGACCCTGC GGGCTCAAGAGAAAC-TTTTGCCCCTCCCTTAACTACATAGAAGAATCTAAATTGGGGG---TCTTTCCCAGAATAAGGG TTATTAGCAGAGATAA---ATTTTATCTGAGTGACCCATCTGTATGGCAGGGCAAACATCTAATTACCAA-ACATCTGCT CTTCTTATCGCCCTGTGAANTGCATTCCTTTCCTCTGAAGTCCCAGACCCCTACCCCCTTCTCCTTAGTTCAGGATGACA TATANACCTCATTTTGCCTGACTG-----TCTTTGGAATTTCCATGTCTGTGTGGATTCCCCGTACGTACGCTATTAAAT --------------TTGATTT----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------TCTCCTG TTAATCTGTCTCATGTCAATTTGATTCTTAGTCCAGCTAGAAGGACCTT-GAAGGGGA--CAGGAATTCTTG----CTCC CCGACA-------------------------------------------------------------------------- --------------- >Canis_familiaris CTAGGAGTAGAAGCAATATGTGCTATTTC------------TGTTCCAAGG---TTTTAGAGAAG---CAGG---TGAAG GGGAACAGAATATGCCACCTCAAA--GTGTGCCA-----GGATG-----------GAACTGAAGGCAATCAAGACCCACC AAAGTTGGGAAAAGC-TCTTACTTCCTCCTTAATTGTCTAAAGCAATTTAGAAAGGGG----CTTGTACCAGAAAGAGAG CTATTACAAGAGATCA-CTTTTTCATCTGAAAGGCTTATCTGCATGGTATGCCAAACATTTATTTATCAA-ACATTTGCT CTTCTCATCTTACTGTGAATTGTCTTGCTTCTCTTTGAAGCTCCAGATCCCTATTCCTTT--CCTTGGCTCAG------- ------CCTGTATT-GCCTTATTA-----TCTTTGAA--TAGCATA-TTTTATGGAGCTTTTGTATGTA-AAAATTAATT -----------------TTTT----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------TTCCCTG TTAATATGTTTCATGTTAATTAAATTATTAGACCAGCCA--AGAACCTA-GAAGGGTAGAGAGAAAAGTGTT-------- --------------------------------TTCCCTTCACCTTCTG-AAGACAGATACAAATAACCATGAGGCCTTAA GGGATGGTGGATCCA >Felis_catus ATATGAGCATAAGCAACATGTGCTATTTC------------TGTTCCAAGG---CTTTTAAGAAG---CAGG---TGAAG GGGAACAGAATCTGCCACCCCAACATGTGTGCCACCTTGGCATG-----------GATCTGAAGGCAATCAAGACCCATA GGACTCAGGAAAAGCTTTTAATCTCCCCCTTAATTGCCTAAAGTAATTTAGAGAGGGA---TCCTGTACCAGGAAGACTG CTATTACCAGAGATAA-ATTTTTCATCTGAAAGACTTATCTGCATGGCAAGGCAAACATTTATTTATCAA-ACATTTGCT TTTCTTATCTTCCTGTGAATTGTCTTGTTTCTCTTTGAAGCTCCGGCTCCC-------TT--CCTCAGCTCAG------- ------CCCCAATT-ACATGGTTG-----TCTTTGAG--TCCCATATTTTTATGCAGTTTTCATATGGACAAAGTTCGAT --------------CTGTTTTTTC-------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------TTTCCTG TTAATCTGTCTTATGTCAATTTAATTATCAGACCAGCCA--AGAATCTT-GAAAGGTAGAGAGAAAACTATTTTCCCTCC CCTACA---TGTA---TATGGACCCCACACATTTTCTTTCTCCTCATG-AAGACAGATACGAATGACAGTGAGGCCTTAA GGAATGGTGGATCAA >Manis_javanica ATATGAGTGGGAGCAATATGTGCTATTGCTAATAGCTACTATGCTCGAAGGCTTCTTTCTAGAAG---CAAT---TGAAG GAAAGCAAGATGCTCCACCCCCAA-----------GTTGGCATGCA---------GAGCTGAAGACAATCACGACTCAGA AGACTCAAGAAAG-CTTACTACCTCCC-GTTAAGTGCCTAAAATAACTTAGAAAGAGGG---CCTCTACCAGGAATAGAG CCATCGTCAAAGATAG-CTTTTCCATCTGAAAGACTTATCTGCATGGCAGAGCAAACATTTATTTACGAACACATTTGCT CTTCTGATCTTTCTGTGAATTGTCTTCCTTCTCTTTAAAGCCCAATA-TCGTATCTCTAT--CCTTAGCTAAGGATGGTA TGAAAACCTCAGTT-GACTGACTGACTGCCTTTTGAG--CTTCAAATTTTTATGAGGCTCCCATATGTACAAAATTAGAC --------------TAATTTT----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------TTTCCTG TTAATCTGTTTTGTGTCAGTTTAATTATCACACCAGCCA--ACAACTTA-GAAGGGCAGAGGGAAATTCTATTCCCTTTC CTTACA---CAAG---CATGCACCCTGTACTTTTCTTTGGCCCTTCTG-AAGACAGATGTAAACAACAGTGCACCCTTAA GGAATGGTGGATCCA >Sus_scrofa ATATGAATGGAAGCAATCTGTGTTATTTC------------TGTCCAAACA---CTTTTAAAAAG---CAGG---TGAAG GAGAGCAGATTATGCAACCCTGAT--AGGTGTCATTTTGGCATGTA---------GGACTGAAGGCAGTCAAGACCCAGC AGACTCAGGAAAATCTTCTTAACTCCCCTTTAACTGCTTGAAATAATTTTAAAAAGGAG---CCTTTACCAGGAAGAGCA GTATCAATACACATAA--CTTTTCATTTGAAAGACTTATCTGCATGGCAAGGTAAGCTTTTTTTAAAATAAATATTTGCT TTTTGCATCTTCCTGTGAATTGTCTT-CTTCCCCTTGAAGCCCCAGA-CCCTATCCCTTT--CCTTAGCTCAGTATGGCA TATAAACATCAATT-CTCTG---------TCTTCGAG--TCTCATATTTTTATGGGACTGCCATACATGCAAAATTAAAT --------------TTGTGTT----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------TCTCCTG CTAGTCTGCCTTATATCAATT-AATTATCAGACAAGGCA--AGAACCTA-GAGAGGCAGAATAAAAATTATTTTTCCTCC CCTACA---CAAG---TATGCAGGCTGCACC-TTGCTTTCCCCTTCTG-AAG--AGATGCAGATGACAGTGAGGTTTTAA AGG-CAGTACAGCCT >Bos_taurus ATATGAATGGAAGCAATGTGTGCTTTCTC------------TGCCCAAGGG---TTTTTAAAAAC---CAGG---TGAGG ---------------CACCCCAAA--GCATGCCATTTTGGCATATT---------GAACTGAAGGCAAACAAGACCCAGC AGATTCAGGAAAGTCTTCCTACCTCCC-CTTAACTGCCTAAAATAATTTAGAAAAGGGG---CCTGTACCAGGTAAAGTA GTAATAGCACAGATAA-CTTTTTCATCTGAAAGACTTAGATGCATGACA-AGCAAGCATTTATTTACTAA-ATATTTGCT TTTCTCATCTTCTTGTGGATCATCTGCTTTTTCTTGGATGTCCCAGATCCTTTTCC------TCTTAGCTCAAGATGGTA TTTAAGCCTCAATT-GCCTGATTC-----TCTTTGAG--TCTCATTTATTTGCAGGACAGCCA----TACAAAATTAAGT GTGTACTGCTCCTGTTGTTTTTGGTGGTTAGTCTCTAAGTCATGTCTGACTCTTGTGACCTCATAGACTGTAGCCCACTG GGTTCCTCTGTTCATGAGATTTCCCAGGCAAGAATACTGGAGTAGTTTGCCATTTCCTTCTCAAAGAGATCTTCCTGACC CAGGGATCAAAGCTGCATCTCCTGCATTGACAGATGAATTCTTTACCACTGAGCCACCAGGGAAGCACATGTTTCTCCTT TTATTCTACCTTATATCAATTTCATCATCAGACTGAGCA--AGAACCTA-CAAAGGCAGATGAAAAGTTACTTTTCCTCC CCTACA---TGGG---TATGCAGGTTGCACTTCCCTTTCCCCCTTCTG-AAGACAGATGCAATTGACAGCGAGGTCTTAA GGGGTGGTAGATCCA >Equus_caballus ATATGAGTAGAAGCAATGTGTGCTATTTC------------TGTTTCAAGG---CTTTTAAGAAG---TAGG---TGAAG GGGGGCAGAATACGCCACCTCAAA--ATGTGCCACATTGGCACGTG---------GAGCTGAAGACAATCAAGACCCAAC AGACTCAAGAGAAGCTTTTTACCTCCCTCTTAACAGCTTAAAATAATTTAGAAAGGGGG---TCTGTACCAGGAAGACAG CTACTACCTGAGATAA-CTGTTTTATCTGAAAGACTTATGTGCATGGCAGGGCAAACATTTATTTACCAA-ACATTTGCT TTTCTCATCCTT---------------CTTCTCAT--------------------------------------------- ------CATCAAAG-GCCTGACTG-----CCTTTGAG--TCACATATTTTTATGGGGCTCCTGTATGTACAAAATTAAAT --------------TTGTTTT----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------TGTCCTG TTAATCTGTCTTATGTCAACGTAATTATTAGGCCAGCCA--AGAACCTA-TAAAGGTAGAGGAAAAATTATTTTCTCTCC TCTAAA---CAGG---TATGCGCCCTGCACCTTTCCTTTTCCCTTCTG-AAGCCAGATGCAAATGACAATGAGGGCTTAA GGGATGGTGGATCCT >Ceratotherium_simum ATATGAGTAGAAGTAATATGTGCTATTTC------------TGTTTCGAGG---CTTTTAAGAAG---TAAG---TGAAG GGGGGCAGAATACACCACCCCAAA--ACGTGTCACATTGGCGTGTG---------GAGCTGAAGGCGATCAAGACCCAGC AGACTCAGGAGAAGCTTTTTACCTCCCTCTTAACT-CTTAAAATAATTTAGAAATAGGG---TCTGTACCAGGAAGAGAG CTATTACCAGAGAGAA-CTTTTT-ATCTGAAAGACTCATGTGCATGGCAGGGCAAACATTTACTTACCAA-ACATTTGCT TTTCTCATCTTCCTGTGAATTGCCTTCCTACTCTTTGAAGCCCCAGACCCCTATCCTTTT--CCCTAGCTCAGGATGGTA TATAAGCCTCAATT-GTCTGACTG-----CCTTTGAG--TCTCGTATTTTTATGGGGCTCCCATACATACAAAATTAAAT --------------TTGTTTT----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------TGTCCTG TTAATCTGTCTTATGTCAATTTAATTATTAGACCAGCCA--AGAACCTA-GAAGGGTAGAGGGAAAATTATTTTCTCTCC TCTAGA---CAGG---TATGCAACCTACACCTTTCCTTTCCCCTTCTG-AAAACAGATGCAAATGACAATGAGGGCTTAC AGAATAGTGGATCCA >Myotis_myotis ATATGAATGGAAGCAATCTGTGCTATTTC------------TGTTCCAAGG---CTTTTAAGAAT---CAGG---TGAAG GGGGA-GGAACATACCACCTCAAA---GGTGCCACTTTGGCATGTG---------GAGATAAAGGCAATCAAGCCCCAGA AGATTCAGGAAAGGATTTTTACCTTC-CCTTCATTGCCTGAAAGAATTTAGAAAGGGGCCTGCCTGTACCAGAAAGAGGG CTATTGTCAGAGAAAACCCTTTTCACCTGCAAGATGGATCTGCCTGGCAGGGCAAACATTTCTTTACCAA-ACATTTGCT CTCCTCACTTTCCTGTGAATCGTCTCCCTCCCCTTGGCAATCCCAGGTCCCTATCCTTTT--CCTTAGCTCAGGTAGTTT TATAAACCTCAATT-GCCTG----------CTTTGAG--TCTCATCTTTTTATGGGGCTCTCATATGTATGAAATTAAAT ----------------GTTTT----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------TCTCCTG TTAATTTGTTGTATATCCATTTAATTATTAGACTAACCA--AGAACCTAGGAAGGGTAGAGGGAAAATTATTTCCTCTCC CCTACA---CAAG---TATGTCTCCTGCACCTTTCTGTTCTCCTTCTG-AAAACAGATCCA-ATGACAATGAGACCCTAA GCGATGGTGGATCCA >Rousettus_aegyptiacus ATATGAGGGGAAGCAATATGTGCTATTTC------------TGTTCCAAGG---CTTTGAAGAAG---CAGG---CAATG GAGAAAAGAACATGCCACCTCCAAA-ATGTGCTACTTT-GCATGTG---------GAGCTAAAGACAATCAAGACTCAGC GGACTCACAAAAGGCTTTAAATCTTCCCCTTAACTCCCTAAATGAATTAGGAAAGGAGT---TTTGTACCAGGAACAAAG CTATTACTAGAGTTAA-CTTTTTCATCTGAAAGGCTTATCTGCATAGCAGGGCAAACATTTATTTACCAA-ATATTTTCT CTTCTCATCTTCCTGTGAATTGTCTCCTTCCCCTTTTAAGCCCCAGACTCCTGTCCCTTT--TCTTAGTTCAGAATGGTA CATAAACCTCAATT-GCCTGACTG-----CTTTTGGG--TCTCATATTTTTACGGGACTCCTGTATGTATGAAATTAAAT --------------TTGTTTT----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------TCTCTTG TTAATTTGTTTTATATAAATTTAAT----AGACCAACCG--AGAACCTA-GAATGGTTGAGGAAAA-TTATTTTTCCTTC CCTACA---CAAG---TATGTTCCTTGCACCTTTCCTTTTCCCTTCTG-A--ACAGACACAAATGACAATGAGCCCTTAA GCAATGGTGGATCCA >Condylura_cristata ATATGAGTGTAAGTGGAATGCACTAATTC------------TGTTCCAAGG---CTTTTAAG------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----TGGTGGCCCCA >Sorex_araneus AAATGTGTGAAAGTAGTACGCATTACATC------------TGTCCTAAAG---CTTT-AAGAGG---CAGG-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------TGTTTTCCTTGTACTTTTTATTCCCCCTTCCCAAAGGTAGATGAGAACAACAATCGGG--TTAA TAAGTAGTGGGTCCA >Homo_sapiens ATGTGAGTGAAACTGATATGTGCTATTTC------------TGTTTCAAAG---CTTTTAAGAAG---CAGG-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------CATGCAATATGCTCCATCCCCTTCCCCTTTTGTAAAATAGATCCAAATGA---TGAGGTCTTAA GGGATGGTGGATCCA Dog22_LTR >MER57LA -------------------------------------------------------------------------------- -----------------------------TGTGTTAAAAGATAAACTGAGGCATATTAAAAATTTTAAGAGTTTATTTGA GCAAAAATCGATTCAAATCAGGCAGCACCAAACCAGGAAGTGGTTAGGAGCGCTCCACCGACAGGAGC-TAGGGGA-AAG ACTTTT---ATAGAGAAGAGGCAGAAG---------------------------------------------------CA AAGCAAGGAAATTATTTGATTGGCTATAGCTTAAGCAGTTGCCTTATTTGGGAAAGCCTAGTTGGCT-----GTTTGTGA TTGGTTGTCCTTAGGTTTTGATTTCTTAACCTTGAGGCATTTACAGGCTTAGGTTTTGGTTTGCTTACGTAGGCTGCTAA GGCATTAGAACCACCTCAGTCTAATGGCCTCCTTGTTTAATTAATTT-AACA---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------ >Canis_familiaris TAACAACTT----TTCATCCATCTTCTGAAGCACTTTTG--CTT----------TAAAAATGCTGCTTTCA--------- --TAAACCACGTGGAGAG---CAGCT-----TGTACAAATACCAACTGAGGCATATGACAAACGTTAAGAGTGTATTTGA GCAAAAGTTCATTCAAATGGGAACACACAAAACCAG-AAGTGGTTAGGAGCAATCCATTAACAGGTGT-TGGGGAAAGTG ACCCGGGAGAGAGAGAAAAGGAGGAAG----------------------------------------------------- TAGTTAGGAAACTATT-GATTAGCCATGGCTTAC--------------------AGCTTTGTCGGCC-----CCTTATGA CTGGTTGTCCTCGGGTGTCAATTTCA---CCTTGAGGCATTTACCGGCTTAAGATATGGTTTG-TGATGTAGGCTGCCAT GAGATTAGAGCCACCTGAGTCTAACAGCTTCCTTGTTTAATTAATTT-AATT---GTAG---GTTAGTAGACAACTAGGT C--TATCAATAAATGA---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AT CTGCATATTGTCTGGCTTTTTATT >Felis_catus TAACAAATT----TTTATCCCATTTCCGAAGTACTTTTG--TTT----------GAAAGATGCTGCTTTCA--------- --TACAATAC----GTAG---ATAG------TGTTCAAATATCAACCAACG-----------CCTAAAGAGTTTATTGGA GCGAAAGTCCATTCTGATGGGGATACACCAAACCAG-AAGTGGTTACGAACAGTCCATTAACAGC----TGGAGA--GAC ACTTTG---GTATAGAAAAGGAGGAAG---------------------------------------------------CA AAGTAAGGAAATCATT-GACTGGCTACAGCTTAA--------------------AGCCTGGTTAGCT-----GCTTGTGA CTCGTGGTCCTCAGGTTCCAATTTCATAACTTCGAGGCATTTACAGGCTTA-------------TGATGTAGGCCGCCAG GACAGAAGAGTCACCTCAGTCTAATGGCCTCCTTGTTTAATTAACTT-AA------GAG---GTTAGTGGCTAACTAGGT C--CATCGACAAATGA---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AT CTGGACATTGTCTGGCTTTTTATT >Sus_scrofa TAACCATTT----TTAAGCCAATTTCTGAAGCATTTTTGTTTTTTTTTTTTTTTTAAAAATGCTGCCTTCT--------- --TACTCTTGGTAGGTAA---CTAG------TGTTCAAAGATAAACTAAAGCAGAGAAAAA-------GAGTTTCTTTGA TCAAAAATCAACTCAAACGGGGCAGCACAAAACAGG-AA------------CAACCAGTGGAAGAGTC-TGGAGA--GAG ACTTT----ATAGAGAAAAAGTGAAAGCAAAGTAAGGACTTTGTTTTGTTTTGTTTTCTCAGGCTGCACCTGCAACAACA AAGTAAGGAAATTATT-GATAGGTTGTAGATTGA--------------------AGCCTAGCTGGCT-----GCCTATGC TTGGTTGTCCTTAGGTGTTAATTCCACAACCTTGAGGCATTTACAGGCTTAGGTTTTGGTTTG-TTACACAAGCC-CTGG GGCAGTAAAGCCACCTCCATCTCATGGCCTCCTTGTTTAATGAATAT-GACA---GTAG---ATTAGTAAATAAGAAGGT C--CACTGACAAATAT---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AT CTGGGTATGGTCTGGCTCTTCCTT >Bos_taurus AAAAAGTTT----TTT---------------------TTTTTTT----------TAAAGTTGCTTCT------------- --TATACTAGGTGAGTGG---GTAG------TGTTCAAAGATAAACTGAAGCATTAAAAAAATTTTAAGAGTTTATTTAA TCAAGAGTCAACTCATATAGGACGAT--------------------------ATTTACTGGCAGGAGC-TGAGGA--GAG ACTTTC---ATAGAGAAAAAGTAGAAA---------------------------------------------------CA AAATAAGGAGATTACT-GATTGG-------TTGA--------------------AGCCCAGCAAGTT-----GTTTGTGA TTGGTTGGTGTTAGGTGTCAATTTCATAACCCTGAGGCATGTGCAGGTTTGGCTTTGGGTTCG-CTACACAGGCCACTAG GGCATCAGCGCCACCTCAGTCTCATGGCCTCCTTGTTTAATTAACAT-GACA---GTTG---CGTAGTGGGTAAGTAGGT C--CATGAATAAGTGAA--------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AT TTGGGTATGATCTGGTTCTTTATT >Equus_caballus TAACAACTT----TTCATCCAATTTCTGAAGCATTTTTG--TTT----------AAAAAATGCT---TTCT--------- --CACACTAGGTGGATAG---GTAA------TGTTCAAAGGGAAACTGAGGCATCTTAAAAATGTTAAGAGTTTGTTTGT GCAAAAGTCCACTAGAATGGGGCAGCGCCAAATCGG-AAGCGCTGAGGAGGGATCCACTGACAGGAGCGCAAGGA--GAG ACTTTT---ATAGAGAAAAGCAG-------------------------------------------------------CA AAGTAAGGAAATTACT-GATTGGCTGTAGCTCAA--------------------GGCCTAGTTGGCT-----GTTTGTGA TTGGTTGTCCTCAGGTTTCGATTTCATAACCTTGAGGCATTTACAGGCTTAGATTTTGGTTTG-TTATGTAGGTCACTAG GGCATTAGAACCCCCTCAGTCTAATGGCCTCCTGATTTAATTAATTT-AACA---GTAG---ATTAGTGCACAAGTAGGT C--TGTCAAAAAATGA---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AT CTTGATATTGTCTGGCTTTTTGTT >Ceratotherium_simum TAACAACTT----TTTATGCAACATCTGAAGCATTTTTG--TTT----------AAAACATGCTGCTTTCT--------- --TACAATAAGTGGATAG---GTAG------TGTTAAAAGGTAAACTGAGGCATATTAAAAATGTTATGAGTTTATTCGA GCAAAAGTCCATTTGAATGGGGCAGCACCAGACGGG-AAGTGGTTAGGAGCCATTCACCAACAGGAGCTCAGGGA--GAG ACTTTT---ACAGAGGAAAGAAG-------------------------------------------------------CA AAGGAAGGAAATGATT-GATTGCCTGTAGCTCAA--------------------AGCCTAGTTGGCT-----GTTTGTGA CTGGTCGTCCTTAGGTTTCGATTTCATAACCTTGAGGCATTTACAGGCTTCGATTTTGGTTTG-TTACATAGGCCCCCAC GGCATTCAAGCCCCCTCAGTCTAATGGCCTCCTCATTTAATTAATTT-AACA---GTAG---ATTAGCAGATAAGTAGGT C--CATCAACAAATGA---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AT CTGGATATTGTCTGGCTTTTTATT >Myotis_myotis TAATCATAT----TTTAGCCAAAATTGGAAGCATTTCTG--TTT----------TTAAAATGCTGCTTTCT--------- --CACACACGGTGGATAG---GTAG------TGTTCAAAGATAGACTGAAGCGTGTTCGAAATGTTAAGGGTTTGTTTGA GCAAAGGTAAATTTGAACAGGTCAGCACCAAACCGA-AAACAGTTACCAACAATCCACCCACAGAAGC-TGGGGA--GAG ACTTCT---ATAGAGAAAAAACGGAGG---------------------------------------------------CA AAGTCAGGAAA------------------CGTAA--------------------AGGCTGGTTGGCCTTCAGGTTTGTGA CTGGTTGTCCTTTG--------TTTGTAACCTTGAGGCATTTACAGGCTTTGGTTTGGGT-TG-GTCCATAGGCTGCCAA GGCATTAGAGCCACCTCAGTCTCATGGCCTCCTTGTTTAATCCACAG-TA-------AG---ATTAGTGGATAAGGAAGT C--CGTGGGCAAGTGA---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AA ATGGATAATGTCTGGCTTTTCATT >Rousettus_aegyptiacus TAGCAATTC----TGTATCCAATTTCTGAAGCGTTTTTT--TTT----------AA----TGCTGCTTTCT--------- --CATACTAG----ATAG---ATAA------AATTCAAAGATAAACTGAGGCTTATTAAAAATGA---------ATTTAA GCAAAAGTTGACTCAAGTGAGGCAGTACCAAACCAG-AAGTGGTTAG-AGCAATCCATCAACCGACAC-TGGTGA--GAG ACTT-----ATAGAGAAAAGGTGGACG---------------------------------------------------CA AAGTAAGGAAACTGTT-GATTGGCTATAGCTTAA--------------------AGCCTAGTTGGCT-----ATTTGACA TTGGTTATCCTTAGGCCTAGATTTCATAACCTGGAGGCATTTATAGGATTAGATTTTAGTTTG-GTATATAGGCTGCCAA AACATTAGAGCCACCTTAGTCTAATGGCCTTCTTATTTAATTAATTTTAACA---GTGG---ACAAGTGGATAAGTAAAT C--CAGTGACAAGTGA---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AT CTGAATATTGTCTGGCTTATTATT >Condylura_cristata AAACTACTTTTTATTTATCCAATTTCGGAAGCATTTTTG--TTT----------AAAATGTGCAGCTTTCT--------- --TACACTCAGTGAATAG-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------GCAG---ACAAGCCA---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AT CTGGATATTGTGCTGCATTCTGTT >Erinaceus_europaeus ACAAAACTT----TGTAGACAATTTCCTGAGCACTTTG---TTT----------AAA---CCATGCTTTAAACAAAGCAT GGTAGACTAGGCAGACAG-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------TCATAG---ACTAGTGAATGAGTGGGT TCACATTGACAGATCAATCTGTATTTATTTTTGCATTCATTTTTAAAGATTTTATTTATTTGAGGGGAAGAGAGAACCAG GGTGTCACTATGGCACACACATTGCCAGGAATTGAACTCTGGACCTCATGCTTAAGAGTCTAATACATTTATCCACTGAG CCACCTCCCAGGTTTCA--------------------------------------------------------------- ------------------------------------------------------------------------------AC CTGGACACTGTGTAAAATTTTGTT >Homo_sapiens TAACAAGTT----TTTAAGCAATTCCAGAAACTTTTTTA--TTT----------AAAAA--------------------- ------CTCTATGGCTAG-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------GTAG---AACAGTAGATAAGCAGGT C--CACAGATAAATCAATCAGAGAAAAAAAAATCTTCCTTTAGAGGAGGTACATGAAACAGAAAACCCTCCCCATGACGA GATGCAACCATGATTCCCTAGGGAGATGAATGGGACCGCTCAGGACCATTCCCATTTGTCCATCTTCACTCCCCAAATGG ACCAGTGACCCCTACTGGATTGTGACAGCTGTGGGCAAAACCCTCCTCCAATTCATGCTCATCATTAAGTAGGAAACTCC ATCGTGGAGGGAGGCACAAAGCTGTTTAGACCCTGGAATTTCACCTAAGGCATAGAGATGCACACATCGCAGATGACCAC ATGGATACTGTCTGCATTTTGATT Dog23_LTR >LTR10_EC -----------------------------------------------------------TGTCGAGAG-TTTAGCTAAGC TACTCCATGGTATTGCTGCCTCGGCATCCA----------TTTTGTTTGGCCAAGCGGCCTGCGGGGACCTTAAACTGAC ACTAG-CCCCTCATGCAAGCGCATGCCCTAGATAGCAGCCCGCAGAGTCACA-AGCAAATG-TAAGTTCCTGATATGACT TCCCCAACAGCCCTTGTGATCAACAGTCTCCCCCGCCTCCCAGGGCCTTCC--CCTTGTGCGCCCCTTAGATAAGACCCC CG----TGGAGCTTACCAAAACCCCGCTCTTTTTGGTTTGAATTGACCAATCCGGCCTTAGCCCGGGAACCCCAAAGCAC TCCACCCACGGACCCTAA-------TAAAGGCATGTGCCCCAGGTCCTGCCTCTCTCTCTGCCTGCACCCTGCCT----T GACCTCCCTATGTGGCCCCTCGAGGCGTGCCGTGTACTTCCTCCAGGACC-------TGTGAGTAATAAACTTCTCTATT TCAATTTCTCTTGTGGTCTGTTGTTGAACCGCGGCTCACCATCC-----GGCACCCTGTGCTCCACTTAACAAATGTTAA TTTAACAAAGTCATAACA-------------------------------------------------------------- ----- >Canis_familiaris GCCAGGGACTCCTACAAATATCTAAAATTCAGTG-TCAGC-AAAAATA---TAAGA---TTTCAAGAG-TTTATCTAAGC TATTCTATGGTATTGTTGCCTTGGCATTCA----------TTTTGTGCAGCCAAGCAGCCTGTATGGACCTTAAACTGAC AGTAG-CCCTTCATGAAAGCTCCCATCCTAAATGGCAG-CCACAGAGCCACA-AGAAAATG-CAAGTCATTGATACGACT T-CCCAATAGCTTTTTGG--TAATAATCTCTCCTGCCTCCCA-TACCTATATGCCTCCTGTACTTCTTGGATAAAACCCC TG----TGGGACTTACCAAAGTCCTCTTC-TTTTAGTTTGAGTTGACCAATTTGGCCCCAGCCTGGGAACCCCAAAGCAC TCTACACATGGATCCTAA--------AAAGA-AAGTGCCCCTGGTCCTGTCCCTCTCTCTGCCTGCACCATGTCT----T GACTTCTCCAAATAGCACCTTGTGGTGCTTCCTCTACCTCCTCTAACACC-------TGTGAGTGATAGTCTTCTCTATT TCAATTTCTCTTGTGGTCTTTTGCTGAACTGTGGCTCACCATAC-----AGTAGCCTGTACTGTAGTTTACACATGTTAA TTTAACAGTGTCATAATA---TAAGT---TTATAAACTCAGAAAAGTGATGAAACAATTGAAGAGGAAACTAAAATACAG GGAAA >Felis_catus GCAGGGGACTCATACAAATATCTAAAATGCATT--TCAGC-AAAAATA---TAAAA---TGCCAAGAG-TTGAGCTAACC TACTCCATGGTATTGCTGCTTTGGCATCCA----------TTTTGTGCAGCCAAGCAGCCTGTGGGGACCTTAAGCTGAC AGCAG-CCCTTCATGCAAGTTCATGTCCTGGATGGCAG-CCACAGAGCCACA-AGAAAATG-CAGGTTCCTGATAGGACT C-CCCAACAGCC-TTGTAATCAACAGTCTCTCCTGCCTCCCAGCACATCTGTGCCTTCTGCACTCCTTGGATAAAACCCC TG----TGGGACTTACCATAACCCTGCT--TTTTGGTCTGAGTTGACCAATTTGGACCTAGCCTGGGAACAAGAGAGCCC TCTACACACAGACCTTAA-------TAAAGG-AAGTGCCCCAGGTCCTGTCACTCTCTCTGCCTGCACCTTGCCC----T GACCTCTCCACATGGCACCTTGTGGTGCTCCCTCTACCTCCTCTAAGACC-------TGTGACTATTAGACTTCTCTATT TCAATTTCTCTTGTGG-CTTTCATTGAACCATGATTCACCATCCAGTAGAGTAGCTTGTACTCTAGTTATCACATGTTAA TTTAACAATGTCATAACA---TAAGG---TCATAAACTCAGAAAAGTGAAGGCGG-AGGGAAGAGGAAGCTAAGATACAC AAAAA >Sus_scrofa GGCAGGGACT--TGTAAATATCTAAAATGCAGTA-TCAAC-AAAAATA---TAAAG---TGGTGAGAGTTTTATCTAAGC TATTC-ATGGTATTGCTGCACTGGCATCCC----------TTTTGTGTGGCCAAGTGTCCCGCAGAGACCTTAAACAGAT ACTAGTCCCTTCATACAGAGGTATTCCTTAGACAACA----------------AACAAACA-TAAGTCCCTGATATGACT TCCCCAACAGTGCTTGTGATCAACACTCTCCCTCGCCTCCCGGCACCCATATGCCTTATGCATCTCTTGTATAAGACCTC CA----TGGGTTTTTCCAAAACC-TACTC-TCTTGTTTTGAATTGGCCACTCTGACCCTAGCCTGGGAACCCCAAAGCAC TCTAACTACAGATGCTAA-------GACAACTAAGTGCCCTAGGTCCTGCCATTCTCTCTGCCTGCACCCTGCCT----T GACCTCTCCAAATGGCCCCTTGAGGAGTGCCAAGCACCTCCTCCAGGACC-------TGGGACTAATAAACTTCTCTGTT TCAGTTTCTCT-GTGGCCTTTAGCGGAAT--AGGTTCACCATCT-----GGCACCCTCTGTTCCACTTAACAAATGTGA- ----ACAAAATCACATTC---TGAGC----CATAAACCCAGAAAAGTGAAGAC--------AGAGGAACATAAGGTACAC AGAAA >Tursiops_truncatus GGCATGGACT--TATAAATATCTAAAATGCAGTATTCAGCAAAAAATA---TAAGG---TGTAGATAG-TTTAGCTAAGC TACTCCATGGTACTGGTGCCT-GGCATCCA----------TTTTGTGTGTCCAAGTGTCCTGTAGAGACTTTAAACCGAC ACTAGACCCTTCATGCAAGAGTATTGCTTAGGTAACAG-CTACAGAGTCACA-AGCAAATGTTAAGTCCCTGATTTGACT TCCCCAACAGCCCTTGAGATCAACATTCTCTCTTGCCTCCCAGCACCTGTATGCCTTTCACGGCCCTTGGATAAGAACCC CA----AGGGACTTAGGAAAACCACACTC-TTTTGTTTTGAATTGACCAATTGGACCCTAGCCCAGGAACCCCAAAGCAC TCTAGCTACAGATGCTAA-------TAAAAGCAAGTGCACCAGGTCCTGTCACTCTCTCTGCCTGCACCCTGCCT----T GACCTCTCCAAATAGCCCCTTGAGGTGTGCTTAATACCTCCTCTGGGACC-------TGTGAGTAATAAACTTCTCTATT TCAATTTCTCTTTTGGTCTTTTGTTGAAC--AGATTCACCATCT-----GGCACCCTGTGCTCCACTTAACAAATGTTA- ----ACGAAGTCAGAAGA---TGACG---TTATAAACTCAGAAAAGTGAAGACAG-GGGAAAGGGGAACTTAAGGTACCC AGAAA >Equus_caballus GGCAGGGAGTCACATAAATATCTAAACTGCAGTA-TCAGC-AAAAATA---TAGGA---TGTTAGCAG-TTTAGCTAAGC TACTCCATGGTATTGCTGCCGCGGCGTCCA----------TTTTGTGTGGCCAAGTGGTCTGCAGGGACCTTGAACTGAC TCTGG-GCCCTCATGCAAGCACACGCCCTAGATAGCAGCCTGCAGAGTCACATAGCAAATG-TAGGTTCCTGACATGACT TCCCCCACAGCCCCTGGGATTAACAGTCTC-CCTGCTTCCCGGCACCTGTATGCCTCATGTGCCCCTTCAACAAGATCCC CC----TTGGACTTGTCAAAACTTAGCTA-TTTTGGTTTGAATTGACCAATCTGTCCCCAGCCTGAGAAACCCAAAACAC TCTATCCATGAACCCTAA-------TAAGGG-AAGTGTCCCAAGTCCTGTCACTCGCTCTGCCTGCA-CCTGCCTCGGGT GACCTCCCTGATTGGCTCCTTGAGGTATGCGCTGTACCTTCTCCAGGAGC-------TGTGAATAATAAACGTCTTTATT TCAGTTTCTTTTGTGATCTTTTGTTGAACTGTGGCTCACCACAG-----GGTAGCCTGTGTGTCATTTAAAAAATGTTAA TTTAACAAAGTCATGACA---TAAGG---TTATAGACACAGAAAAGTGAAAATGG-GGAAAAGCAGAACCTAAGGTACTT AGAAA >Ceratotherium_simum GGAAAGGATTCATATAAATATCTAAAATGCAGTA-TCAGC-AAAAATA---TAAGA---TGTTGGGAG-TTTAGCTAACC TACTCCATGGTATTGTTGCCTAGGCATCCA----------TTTTGTGTGGCTAAGTGGTCTACAGGGGCCTTGAACTGAC ACCAG-CTCCTTCTGCAAGCCCATGCCCTAGACAGCAGCCTGCAGAGTCACACAGCAAATG-TAAGTTCCTGATATGATT T---------CCATTGTGATC-ATAGCCTCTCCTCTCTCCCAGCACCTGTATGCCTTATACACCCCTTAGATAAGACCCC CG----TGGGACTTACCCAAACCCAGCTC-TCTTGGTTTGAATTGACCAATCTGGCCCTAGCCTGAGAAGTCCAAAGTGC TCTACCCATGAACCCTAA-------TAAAGA-AAGTGCCCCAAGTCCTGTCACTCTCTCTGCCTGCA-CTT--------T GACCTCCCCAAATGGCCCCTTGAGGTGTGCCCTGTACCTTCCCCA-GATC-------TGTGAGTAATAAACTTCTCTATT TCAATTTATCTTATGATCTTTTGTTGAACTGTGGCTCACCATCT-----GGCAGCCTGTGCACCACTTAAAAAACGTCAA TTTAACAAAGTCATAACA---TGAGG---TTATAAACACAGAAAAGCAAAGACAGAGGGGAAGGGGAACCTAAGGTACAC AGAAA >Myotis_myotis GGAAAGGGCTCATAAAATTATCTAAAATTTAGTG-TCAGC-AAAAATA---TGATT---CATCATGAG-TTTAGCTAAGC TTTTGCATGGTATTGTTAACTCAGCATCCTTTTTTTTTTTTTTTTTTTAATCAGAAGGCTTCCAGGGACCTTAAATTGAC ACTAG-CCCCTTATACAAACACATGCCCTAGATAACAG--CACAGAGTTTA--GGCAAATG-TAAGTTCCTGTCAAGATT C-CCCAACAACCTCTGTGATCAATA------------------------------------------------------- ------TGGGGCTAACAGAAACCCTTCTC-TTTAGGTTTGAATTGACCACTCCTGCCTTAGTCTGGGAACTGCAAAGCAC TCCATCCACAGACTCTGA-------GAAAGGCATATGCCCCGGGTCCTGCCTTTCTCTCTGCCTGCA--CTGTCT----T GACCTCCCCAAGTGGCCTC-AGAGCTGTGCCCTATACCACTTTCAGGACCTATGAATTGTGAGTAATAAACTTCTCTATT TCAATTTCTCTGGTTGTCTGTTGTAGAAC--TGGCTCACCATCT-----AGTACCCTGCTATCCACTTAACAAAAGTTAA CTTAACAAAGTCATAATG---TAAGT---CTATAAATTCAAAAAAGAGGAGATAG-ATGAAAGGGGAACCCAAGGTACAC AGAAG >Rousettus_aegyptiacus GGAA--GACCCACACAAATATGTACAATGCAATA-TCAGT-AAAAATA---TAAGA---TGATGAGTG-ATTAGCTATGC TATTCCATGTTACTGCTGCCTTGGCATCTA----------TTTTGTTTCACCAAGAGACCTACAGGGACCTTAAATTGCC ACCAG-CTCCTCATGCAAGCACATGCCCTAGGTAACAGCCCACAGAGTCACA-AGCAAATC-TAAGTCCCTGATATGACT TCCCCAACAGCTCTTGTGATGAATAGTCTCTCCTGAATCCCAGCACCTGTATGCCTTAGGCACTCTTTAGATAAGAACTG CCTCCATGTAGTTAACAAAACCCC-GCTC-TTTTGGTTTGAATTGACCACTCCTGCCCTAGCCTGAAAACCTC------- ---ACCCACAGACCATAATAAAGGCTAAAGGCGAGTGCCCCAGATCCTACCTCTCTCTTTGCC----------------- ------------TCACACATTGGAGAGTTCCCTGTATCCTCTCCAGGACCTATGAACTGTGGATAATGAACTTCTCTGTT TTAATTTCTCTTGTGGTTTGTTGTTGAAC--TGGCTCACCATCT-----AGCACCCTGTGATCTACTTAA-AATGACTAA TTTAATAAAGGCATAACA---TAACA---TTATAAACTCACAAATGGGAAGATAA-GGGAAAAAGAAACATATAGTACAC AGAAA >Condylura_cristata GACGGGAACT--CAAAAATGTCTAAAATGTT----TCTGCAAAAATTG---TAAGG------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------TTATGAATGAAGAAAAGTTAAGACAATGGGGAAGAGGAATTTAAAATACAC AGCAG >Erinaceus_europaeus GAAGTGGAC--ACATGAGTATCTAAGACGCTATG-TCTGC--ATCTCA---TGGGG------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------TCATAAGTCAAGAGCAGCTA-GACAT---------GGAA---GAGACAAAC AGAAT >Homo_sapiens GGAGAGGACTCACTCGA---CATGAAAAAAAGTA-TCAGT--AAATTA---TAAGG------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------TTGTAAACTCAGAAAAGTGAAGACAA------AAGGCAGCCCAAGGTACAC AGAGA Dog26_LINE >L1MA9_3END -------------------------------------------------------------------------------- ---------------AGAAAAGGGAACCCTTGTACACT--GTTGGTGGGAATGTAAATTGGTACAGCCATTATGGAAAAC AGTATGGAGGTTCCTCAAAAAATTAAAAATAGAACTACCATATGATCCAGCAATCCCACTTCTGGGTATATATCCAAA-G GAAATGAAATCAGTATCTCGAAGAGATATCTGCACTCCCATGTTCATTGCAGCATTATTCACAATAGCCAAGATATGGAA NCAACCTAAGTGTCCATCGACGGATGAATGGATAAAGAAAATGTGGTATATATACACA-------------ATGGAATAT TATTCAGCCTTAAAAAAGAAGGAAATCCTGCCATTTGTGACAACATGGATGAACCTGGAGGACATTATGCTAAGTGAAAT AAGCCAGGCACAGAAAGACAAATACTGCATGATCTCACTTATATGTGGAATCTAAAAAA--------------------- --GTCAAACTCATAGAAGCAGAGAGTAGAATGGTGGTTGCCAGGGGCTGGGGGGTGGGGG---------AAATGGGGAGA TGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGTACAGCATGGTGACTATAG TTAATAATACTGTATTGTATACTTGAAATTTGCTAAG---AGAGTAGATCTTAAGTGTTCTCAC--------CACACACA AAAAAAT---GGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCAC----AATGTATAC GTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA ------------------------------------------------------------------------------ >Canis_familiaris CAGCTTTCTCTTCTG-----TGGAATCAGA------AAA-AAACTCTTATTTGTTTGTTTA---------------AAAA TATTAATGCGTA-----------------TCGTGCACT--GTTGGTGGGAGTGTAAATTGGTGCAGCCACTAAGGCAAAC AAGATGGAGGTTCCTCAAAGA-TTAAAAATAGAACTACTGTATGATCCATCAATTCCACTTCTGGATATTTATCCAAA-G AAAATGAAAGCA-TAACTTGAAAAGATATGTGC-TCCCTATGTTCATTGAAGCATTAGTTTTAATAGCCAATATATTGAA ACACTCTAGGTGTCC------------GTGGATAAAGAAGATG---CACACACACATG-------------ATAGACTAT TCTTCAACCATAAAAATGAATGAAA--------TTTTCAGCCACATGGATGGACCTTGAAGACATTTTGCTAAGTGAAAT AAGTCAAATAGAAAAAGACA-ATACTACATGATCTCACTTACATGTGAGATCAAAAAAAAAAAAAAAACCCAAAATTAAA AAGCCTAACTCAGAG------AAAACAGATCAGTGGTTG--GGAGGAGGAGGGGCAGGTAGAC------AAAATGGGTGT AGGGAGCCAAAAGGCACAAACTTCCAGGTAT---AAAGAAGTAAATCCTGGGGATCTGATGTACAGCATGGCAACTATGG TTAATAATGCTGTATTACATACTGGAAAATTCCTAAG---AGAGTAAATCTTAAAAGTTTTCTT--------CACAAGAA AAAGAATTTTGGC-ACTTTGTATGATGACAG--ATCTTAAGTAAACTTACTGTGGTCACCATTTTGC----AATATATAC AAGAACAGAATCATTATTTTGTACACCTGAAACTAATATAG-TGTTG-ATGTCAATTATGCCTCAAT---AA-------- ---AGAA-TATTAATGTATTT---ATTATTA---TCATATCA-AAGAAATGGTGCTCACCTAGCACCTTTGAGTGGCG >Felis_catus CAGCTTTCTCCTCTG-----TAGAATCAGA------AAT----------GATATTTATTTA----TTTATTTT---TAAA TATTAACCTATC-----------------CTGTGCACT--GTTGGTG-GAATGTAAATTGGATCTGCCACTACAGAAAAC AGTATGGAAGTTCCTCAGAAA-TGAAAAAGAGAACTACCTTATGATCCAACAACTCCATTTCTAGGTATTTATCCAAA-G AAAAGAAAAACACTGACTTGAAAAAATATATGC-ATCCCATGTTCATTGAAGCATTAATTATAATAGCCAGTAGATGGAA ACAACCTAGGCATCCACTGATAGATGAACGGATGAAGAAGATGTGACATATACATATATCATAGATACATGATAGACTAT TGCCTAACCATAAAAAAGAATGAAA--------TTTGCAACAACATGGATGGACCTTGAAGGCATTTTACTAAG-----T AAGTCAAACAGAAAAAGACACATACCGTGTGATGTCGCTCATATGTGAAATCTAAAAAACACAAAAAC---------AAA AAATGTAACTCAGAG------AGAACAGATTGGTGGTTGCCAGAGATTGGGAGGAAGGGCAGGTAGACAAAAATGCGTGT AGGAGGCTAAAAGGTAAAAACTTCCTGTTAT--AAAATAAATAAATCCTGGGGATCTAATGCACAGCATGGTGACTATAG TTAACAGTACTGTATTGCATACTGGAAAATTGCTGAG---AGAATAAATCTTAAAAGTTCTCTT--------CATGAGAA AAAAAGTTTTGGC-ACTTTGTATGACGACAG--ATGTTAACTGAACTCATTGCAGTAATCATTTTAC----AAAATTTAC AAATATTGAATCATTGTGCTGTACACCTGAAACTAAA-----TGTTTTATGTCAATTATGCCCCGATA--AA-------- ---AAAA-TATTAACGTATGT---ATTATTA---TTGCATGA-AAGAAATGGTGCTC-CATTGGACCTTTGAGCACTG >Manis_javanica CAGCTTTCTTCTCTG-----TAGAATAGGA------ACC---ACGTT-AATTATTTAATTA-ATTTTTACCTT---AAAA TA-TAATGTATA-----------------TTGTTCACT--ATTGGTGGGAATGTAAATTGGTGCACCCACTATGGAAAAC AATATGGAAGGTCCCAAAATA-TTTAAAATAGAACTACCGTATGAATC---------ATGTCTAGGTATTTGTCTGAA-T AAAATGAAAACACTAACTCAAAAATTTATGTGCACCCCCATGTTCATTACAGCCTGATTTATAATAGCCAAGATATGGGA ACAAGATAAGTGTCCATTGATGAATGAATAGAT-AAGAAACTGTGGTATATATATACA-------------ATGTAATAT T---CAGCCATAAAAAAGAATGAAATCTTGCCTTTTGCAACAACACGGATGGACCTTGAGGGCATTATGTTAAATGAAAT AAGTCAAACAAAGAAAGGCAAATACTGTATGCTCTCACTTATGTGGAGAATTAATAAAAAGAAAAAAC----------CA CAACAAAACTCACAG----ATAGAGTAGGTTGGTGGT----AGAGGCTGAGAGGG------------------TGAGTGA AATGAGTGAAAGGGGTCAAGCATCCAGTTAC------AAAATAAGTCATGGGGATGTAACATAAAGCATGGTGACTATAG GTAATAATAATGTATTGCATATTTGAAAGTTGCTAATAACAGAGTAAATCTTAAATATTCTCATCACACACACACACACA CACAAATACCTGTGGCCATGTATGGTGATGG--ATGTTAACCAGACTTATTGTGGTGATCATTTTGC----AATATATAA AAATATTGAGTCACTATGATGTATAACTGAAACTAATATAA-TGTTATATGTCAATTATACATCACTTGAAA-------- ---AAAA-AAGTAATGTGTGT---ATTATTT---TTGCATGA-AGGAAATGGTCCTCACCTTGCCCCTGTGAGTGGTG >Sus_scrofa CAGCTTTCTTCTTTG-----TGGAATAGGA------AAA---ATGCTAATTTACTTATGTATTTTTTTACTTT---AAAA TGTTAATGCATA-----------------TTGTGCACT--ATTGTTGAGAATGTAGATTGGTACAGCTACTGGGGAAAAC AGTGTTGAGTTTCCTCAAAAA-TTAAAAATAGAATTACTAGATGATTCAGCA-----ACTTCTAGGTATTAACACAAACA AAAATGAAAACACTAACTTGAAAACATATCTGG-TCTCCATGTTCTTAGCAACATTATTTACAATAGCCAAGATTTGGAA ACAACCTAAGTATTCATTGATAG-TGAATGGATAAAGAACATGTGGTATATACATACA-------------ATGGAATAT TATTCAGCCATATAAAATAATGAAAGCTTGCCATTTGTGATAACATGAGTGGACCTTGAGGGCATTATGCTAAGTGAAAT AAGTCAAACAGATAAAGACAAATACTATATGATCTAACTTATAAGAGGAATCTTAAAAAAAAAA--------------CC AAAACACCCTCATAG----ATAGAACAGATTGATTGTTGCCAGAGATAGAGAGGGATG----------------GAATGA AGGGCGTCAAAAGGCACAAACTTCCAGTTAT--AAAATAAAGAAGTCATGGGAATGCAATGTATAGCATGGCGACTATAG TTAA---TTCTGTACTGCATATTTGAAAGCTGCTAAG---AGAGTAAATCTTAAAAGTTCTCAT--------CACAAGAA AAAAAATTT--GTAACTATATATGATGACAG--ATGTTGAATAGATTTGCTGTAGTGAT---TTTGCAATAAATATTTAC AAATACCAAAT-ATTATGTAGTATACCCAAAATTAAGATAA-TGCTATATGTCATTTATACCTCAATTT--A-------- ---AAAA--ATTAATGCATTT---ATTATTA---TTGCATCA-AAGAAATGGTGGTCACCTTTCACCTCTGAGTGGTG >Vicugna_pacos CAGCCTTCTTCTCTG-----TGGAATAGGA------AAA----TGCTAGCTTATTTATTTATTTTTTTACTTT---AAAA TATTAATGTTGA-----------------TTGTGCAGTTTGTGGGTGGGTTTGTAAATTGGTGTAGCCACTATGGAAAAC AGTACAGAGGGTCCTGAAAAG-TCAAAAATAGAGCCACTATATGATCCAGCAATTCCACTTCTGGGTAGTTATGTGAA-G AAAATGAAAACACTAACTC-AAAAGATGCATATGCCCCCATGTTCACTGCAGCATTACCTACAACAGCCAAGAAATGGAA ACAATCTAAGTATCCATTGGTAGATGAATGGATAAAGAAAATGTGGTATATATAGACA-------------ATGGAATAT TATTCAGCCATAAAAAAGAATGGGAGCTGGCCATTTGTGATAACACGGATGGAACTTGAGGGCATTATGCTGAGTGAAAT AAGTCAGACAGAGAAAGACAAATAGTGTATGATCTCACTCATAGGAGGAACCTTAAAAAAGA------------------ ------CCCTCATAC----ACAGAACAGATTGGTGGTAGCTAGAGGTGGGGAGGGATG------------AGATGGGTGA AGGGGGTCAAAAGATACAAATGTCCAGTTAT--AAAATAAGTAAGTCATGGGGATGCAATGTACAGCATGGTGACTATAG TTAA---TACTGTACTGTTCATTTGAAAGTTGCCAAG---AGAGTAAATCTTAAAAGTTCTCAT--------CAGAAGAA AAAATTCTTTGTTAACTATGTATAGTGACAG--ATGTTGACTAGATTTATTGTG---ATCAATTTGCAATAAATATAAAC AAATATTGAATCAGTATGTAGTATATACAAAACTAACATAG-TGCTATGTGTCAATTATACTTCAATT------------ ---AAAA--ATTAATATATTT---ATTATTA---TTGCATCC-AAGAAATGGTGCTCTCCTTGCACCTCTGAGTGGTG >Equus_caballus CAGATTTCTTCTCTGTGGAATGGAATAGGA------AAA-------------ATTTATTTA-TTTTTTACTTT------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---AAGA-TACTAATATGTTT---ATTATTG---CTGCATTG-AAGAAATCGTGC----------------------- >Ceratotherium_simum CAGCTTTCTCCTCTG-----TGGAACAGCA------AAA---------ATTTATTTATTTA-GTTTTTACTTT------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---AAGA-TATTAATATGTTT---ATTATTA---TTGCATCA-AAGAAACAGTGC----------------------- >Myotis_myotis CAGCATTCTCCTCTG-----TGAAAAAGGA------AAA---ACACTAATTTATTTATTAG--TTTTCACTTT------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---AAGA-TATTAATGTGTTT---ATTATTATTATTGCACCA-CAGATATGGAGCTCACCTTGCACCTCTGAATGCTG >Rousettus_aegyptiacus TAGCTCACTCCTCTG-----TGGAATAGAA------AAA---ACACTCATTTATTTATTTA-GTTTTCACTTT------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---AAGA-TATTAATGTATTT---ATTATTG---TTGCATCC-AAGAAATGGTGCTTACCTTGTACCTTGGAGTGATG >Condylura_cristata CAACTCTCGCCTCTG-----CGGAGCAGGC------AAATATTCATTCATTCATTCATTCATTCATTTATCTT------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---ACAATTATGAATGTGTTT---CTTATCA---TTTTATCAAAAGAAATGGTACCCACCTTACAAGTTGGAGTGCTA >Uropsilus_gracilis CAG-TTTCTCCTTGATAGAATGGAGAAGAATCAAACAAATATTCATTCATTAATTCATTGATGCATTCATTTA------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----TCA-TATATATGTATTT---ACTACCT---TTGCATCA-AAGACATGTCATCACCCTTGCAGCTTGGAGTGGTA >Homo_sapiens CAGCTTTCTTCTCTA-----TGGAATAGGA------ATA-----------ATATTTATTCA-TTTTTTACTTT------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---AAAA-TGTTCATGTTTTT---ATTACTA---TTGCATC---AAAAAAGATGCTTATCTTGCACTTTACAGTGTGG Dog27_LTR >CARERVR1_LTR -------------------------------------------------------------TGTTGGGGAAGGTCATCGA GAAGACGTGACCGCCGGTTGACCCGTGAGCTGGACCCGGGCAATCAGAGGCTCCTCACCCCCTCCCCTGTCCTTGGA-AT GTGGGTTCCGCTTGCCTTCCCCGCTCCCAGAGGCTGCTCCAAGGACACAGCCTTGAGATAGTGATGTGGTGTTGAGAACA CCTGNACGGTATACGTGACTGAACCCAGTTAAGGCCTCTATAT------AAACTTTTAAGA-TTTGGCGGGCGGGTGCGG AGATCTACTCGTCTTGCTGCCGCC----CAAGACAAGCCTCGT-ATGTAAGTTCCCTTTGCTTATTAAANCTGCCACCTA CCAACCTGGAGTGGCCTGCCTCTTTCTTCGGTCT---------------------CTCCCTGCCCTCTGCGTACGGGGGC CGGTTTCAGATTACACC-CGGGAAGCTCCCGAGGGGGTTGCGAACCAACA------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----- >Canis_familiaris CACAAGTGCTTGGGATTTTGATTTTTGGCTGGTTTGAATATTTAATTTGC---ATGAG---TGTTGTAAG---TCAT-GA GAAGATATGACTGCTGGTTGATCTGGCACCTGGCCT----------GGGGCTCCTCACCCTCTACCCTGTCCTTGAA-GT GTACATTCTGCCCACCATTCCCATACTAGGA-GGTGTTTCGAGGACATAGTTTTGAGAGAGCAGTGTGTTATTGAGACCA TCTTGACTGAATATGTGAGCAAACCCCATTAAAGCCTCTGTAT------CAGCTTTTAAGATTTTGACA----AGTGAGG AGATCTACTCATCTTGTGGCTGCC----AAAGACAAG-CTCCT-GTGTAAGTTCTT-TTGTTTCTTTAACCTGCCA---- -----------------GTTTCTTTCTTTGGTTT---------------------CTCCTTGATCTCCATGTACTGGGGC TAGTTTCAGATTTTACC-TGGGGAATTCTCAGGA---TTGTCAACTAACA---ATGA----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------G---TGTATATAT--------TTTTCAGTGTATAATAAGTTGGTGGTTAAAATTATTCTA A-GAA >Felis_catus CGAAAGTGTTTAGGAGTTTGATCTTTGGTTCTTTTGAATATTTAATCTGC---ATGAG---TGTTGTAGGAGGTCATTGA GAGGACATGACTGTCGGTTGATCTGGGAGCTAGAC----------GGGGGCTCATCACCCTGTCCCCTGTCCTTGAA-AT GTACATTCTTCTCACCATTCCCACACTAGGA-ACTGTTTCAAGGACA-AGTCTTGAGAGAATAGTGTGTTACTGACAGCA CCTTGACTGAATATATGA-TAAACCCCATTTAGGCCTCTGTCT------CAACTTTAAAGATTCTGGAA-ACAGGAGTGG AGATCTACTCGTC-TGTGGCTGCC----AAAGACGAGCCTCCT-ATATAAGTTCCC-TTGCTTATTTAA------ACCTG CTGATATGGAGTGGATAACCTCTTTCTTTGGTCT---------------------CTCCTTGACCTCCATGTACTTGGGC CAGTTTCAAATTTCACC-CGGGGAGCTTCCAAGG---TTGTGAACCAACA---ACAA----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------G---TGTATATAT--------TTTTCAGTGTATAATAAATTGGTGGTTAAAATTATTCTA AAGAA >Manis_pentadactyla CACAAGCATCTGGGAATCTGATTTTTGGTTATTTTGAATATTTAATTTGC---ATGAG---TGTTGGAGGTGGTCTTCAA GAGGCTATGACTACTAGTTGGCCTGTGAACTGGACCTGGGCAATTGGAGGCTCCTCTCTCCATCCCA-GGCCTTGGG-AT ATACATTCTGCCCACCATTTCCACACTAGGA-GCTGTTTGAAGGAC--AGCCTTGAGAGAGTAAGATGGTGTTGAACCCA TCTCGACTTAATAAGTGGCTGAACCCAGTTAAGGCCTCTATAT------AAACTTTTAAGAATCTGGCAGGT-GGTGCAG AGATCCACTTATCTTGTGGCTGCC----CAAGACAAGCCTTGT-ATGTAAGTTCTC-TTGCTTC---AGCCTGCC-TCCA CCAGTCTGGAGTGGTCTGTCTCAGTTTCCCCTCC------------------------CCTGCCTTCTGTGTACTGGGGC CAGTTTCAGATTTTACCGCAGGAAACTCCCAGGG---CTGTGAACCAACA---AGGA----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------G---TATGTATCT--------TTTTTACTGTATAAT----TGGTGGTTAAAATTAAATAA AAAAA >Sus_scrofa CCCAAGTGTTTGGAAGTTTGATTTTTGGTTATTTTGAATATTTAATTTAT---ATGAA---TATTGGAGGAGGTCTTTGA GAGGATGTGGCCGCTGGTTGAC------------ACAGGCAAACTGGGGGCTCCTCACTCTCTCCCCTGTCTTTGGA-AT GTAC-CTCTGCCCACTGTTCTCATACTCAGA-GCTGTTTCAAGGATGTAGCCTTGAGAGAGTAATGTGTTATTGAGACCA TCTGGACTGAATACATGGCTGAACCCCAATAAGTTCTCCTTAA------AACTTTTTAAGATTCTGGCA---CAGTGCAG TGATCTACT-GTTTTGTGGCTGCC----CAAGAGAAGCTTCCT-ATGTAAGTTCCC-TTGTTTATGAAATGTGCCATCTA CCCATCCGGAGGGGCACGCCTCTTTCCTCCTTCT---------------------CTCCTTGCCTTCCGTGTAC-AGGGC CCGTTTCAGATCTCACC-TGGAGAACTCCCAGTA---TTGTGATCCAACA---ATGA----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------G---CATATATAT--------TTTTCAGTGTGTAATAACCTGATGTTTAAAATGATACCA AAGAA >Bos_taurus CATAGGCATTTGGGAATTTGGTTTTGGGTTATTTTGAATACTTAATTTGT---ATGAG---TGTTGCAGAAGGTTTTGGA GAGGATGTGAATGCCAGGTGACCTGT-AGCTTGACTCAGACAACTGAAGGCTCCTCACTCCCTCCC--GTCTTTGGA-AT GGACA-TCTGCCCACTGCTCCCACACTAGCA-ACTGTTCTAAGGAGGCAGCCTTGAGAGAGTAATGTGTTACTGAGACCA TCTGGACTGAATACATGTCTGAACACCATTAAGGCCACCATAT------AAACTTTTCAG--TCTTGCA---TGATGCAG ATGTCTACTTGTCTTGTAGGGGCT----CAAGCCAAGACTCGT-ATG-AAGTTCCC-TTGCTTGATAAGCCTGCCACCTT CCAATCTGGAATAGCCTGCGCCTTTCTTCAGTCT---------------------TCCCTTGCTCTCCATGCATGGAGGC CAATTTCAGATCTCAGC-TGGAGAACGCTGAATA---TTGTGAACCAACA---ATGG----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------G---AATATTT-T--------TTTTCAGTGTGTAATAAATTGATGGTTAAAATTATACTA AAGAA >Equus_caballus CACAAGTGTTTTGGAATTTAAATTTTGG--ATTTTGAATATCTAATTTAC---ATGAG---TGTTGGAAGAGGTCGTTGA GAAGAAGTGACCACCGGTTGACCTGCAAGCTGGACCTGGGCAATTGGAGGCTCCTCAACCCCTCCC--GTCAGTGGA-AT GTACATTCCGCCCACCGTTCCCACACTCCGA-GCTGTTTCGAGGACACAGGCTTGTGAGAGTAAGGTGTTGTTG---CTA TCTGGACCGAATATGTGACTGCACCCAGTGCAGGCCTTTCTAT------AAACCTTTAAAA-TCTGACAGGCCAGTGCGG CGATCTACTCATCTTGCGGCCACT----CAAGACAAGCCTTGTCACGTAAGTTCCT-GTGCTTATTAAACTCACCACCTA CCAATCTGGAGTGGTCTGCCTCTTTTTTCAGTCT---------------------CTCTTTGCCCTCCCTGTATGGTGGC CAGTTTCAGATTTCA-C-TGGGGAACTCTCAAGG---TTGCAAACCAACA---ATGA----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------G---TATATATAC--------ACTTCAGTGTGTAATAGACTGAGGATTAAAATTATCCTG AAGAA >Ceratotherium_simum CGCAAGTGTTTTGGAATTTAATTTTTGGTCATTTTGAATATCTAATTTAC---AAGAG---TGTTGGAAGAGGTCATCGA GAAGATATGACCACAGGTTGGCCTGCAAGCTGGACCTGGGCAATTGGAGGCTCCTCACCCCCTCCCCTGTCCGTGGA-AT GTACGTTCTGCCCACCATTCCTACACTCTGA-GCTGTTTCAAAGATGCAGCCTTGAGAGAGTGAGGTGTTGTTA---CCA TCTGCACTGGATACGTGACTGAACCCAGTTGAGGCCTTTCTAT------AAACTTTTAAAATTCTGGCAGGAGACTGCGG AGACCTACTCGTCTTGTAGTCACC----CGAGACAAGACTTGTTTTGTAAGTTCCT-TTGCTTATTAAACTCACCACCTA CCAGTCTGGAGTGGTCTGCCTCTTTTTTCAGTCT---------------------CTCTTTGCCCTCCTTGTATGGTGGC CAGTTTCAGATTTCACC-TAGGGGACTCTCAGGG---TTGCAAACCAACA---ATGA----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------G---TATAAATAT--------TTTTCAGTGTGTAATAAATTGAGGATTAAAATTATACCA AAGAA >Myotis_myotis -----------------------TTTGCTTATTTTGAATATTTAATTGAG---ATG-G---TGTTG-------------- GAGCACGTGACTGCTGGTTGATTGGTGAGCTGGGCCCAGGCAGTCAGAGGCTCCTCACCCTCTCCCCTGTCCTTGAA-GG GTACATTCTGCCCACCATTCCCACAGTAGGA-GCTGCTTCAAGGACATAGTTTTGAGAGAGTAAGGCATTGTTGAGGCCA TCTGGATGGT----------------------GGCCTCTATATATATAAAAACTTTTAAGATTCTGATG--TGGGTGCAG AGATCTACTCGTCTTGCAGACACCCCAGCCAGACAAGCCTCAT-ATGTGAGTTCCC-TTTCTTACTAACCCTGCCAACTA CCAAGCTGGAGTGGGCTGCCTCTTTCTTCAGTCT-------------------------TAGCCCTCCATGTACTGGGGC CAGTTTCAGATTTCACC-CAGGG--------------TTGTAAACCAACA---ATGAGTACAGTGGGGCCTTGACTTACG AGTTTAATTCGTTCTGTGATGGAGCTTGTAACTCAAATTACTCGTATGTCAAATCAAAAAGTGAATGAGTGAGACATGTG ATGCTGGGCTGATGTTGTGGCGTTCACTGTGATGTTCGCTGCGCCAACTAGTGGTGGGGTATCTGAAGCTGGCTTGTAAC CCGAATTTTAGCTCACAACTCAAAGCAAAAAATCGGCCGAGAGACGGCTCGTATCTCGAAAAACTCGTTAGTCAGAACAC TCGTAAGTCAAGGCTCCACTG---TATATGTAT--------GTTTCAGTG----------------CTAAAATTGTACTA AAGAA >Murina_aurata_feae -----------------AGAGTGTTTGCTTATTTTGAATATTTAATTTAC---CTG-G---TGTTG-------------- GAGGAAGTGACTGCTGGTTGATTGGTGAGCTGGGCCCAGGCAGTCAGAGGCTCCTCACCCTCTCCCCTGTCCTTGAAGGG GTACATTCTGCCCACCATTCCCACAGTAGGA-GTT-CTTCAAGGATGTAGTTTTGAGAGGGTAAGGTATTGTTGAGGCCA TCTGGATGGT----------------------GGCCTCTATAT------AAACTTTTAAGACTCTGATG--TGGGTGCAG AGATCTGCTCGTCTTGCAGACACCCCAGCCAGACAAGCCTCGT-ATGTGAGTTCCC-TTTCTTACTGACTCTGCCATCTA CCAAGCTGGAGTGGGCTGCCTCTTTCTTCAGTCTTACCTGCACCCCTCTCCCCCCCCCCCGCCTCCCCATGTACTGGGGC CAGTTTCAGATTTCACC-CAGAGAACTCTCAGGG----TGTAAAGCAACA---ATGA----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------G---TATATATAT--------TTTTCAGTG----------------CTAAAATTGTACTA AGGAA >Condylura_cristata CACACATG----GAAATTTGAGTTTTGGTTATTTTGAATATTTGACTTAC---AAGAA---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------TATATATATATATATGTTTTTCAGTGTACAGTCAATTGAGCGTTAGAGTTGTACTA AAGAA >Erinaceus_europaeus CATAAATATTTGGGAATTTTAGTTTTGGTTA-TTTGAATATTTAGTATAT---GAAAA---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------TATATGTGTGTA-----TATTCAGTCTATAATAAATTTATGGTTGGAGATATACTA AAGAA >Homo_sapiens CACAAGTGTTTGGGAATTTGA-TTTTGGCTATTTTGAATATTTAACTTAC---ATGAG---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------TACATGTATA-------TTTTCAGTATATAATAAAGTGATGATTAAAATTATACT- ---AA Dog29_LINE >L1_CARN7_3END ------------------------------------------------------------------------TTGTATGG TGACAGATGGTAACTAGACTTATTGTGGTGATCACTTCACAATGTATACAAATG-TCGAATCACTATGTTGTACACCTGA AACTAATATAACATTGTATGTCAATTATACTCAAATA------AAAA------------------AA------------- ---------------------------------------------------------------- >Canis_familiaris AAAATAAGAAGACAAAGTT-TTAAATTTTTTTT----AGGGATGAGAGTGGAT---ACCA-AAAAGATA----------- TGTCAGATGTTAACTAGACTTATTGTGGTGATCATTTTGAAATATAAATAAATA-TCAAATTATTAGGTTGTACACCTGA AACTAATATAATGCTGTATGTCAGTTATACCCCAATAAAG---AAAATGGTTAAAA--TAAAA--AA----AAAAAGAAA GAAA---TGTGGGTAGGAAGTCACATATGACCAT-GGCATAAGAAG------CTGGCCACAGTG >Felis_catus AAAGTAAAAGGACTAATTTTTAATTTTTTTTTTT---AGGGAGGAGAGTAGAT---CTAG-AAAAGATA----------- TGTCAGATGTTAACTAGACTCATTGTGGTGATGATTTTGCAATACATACAAATGTTCAAATCATTATTTTGTATACCTGA AACTAATATAATGCTGTGTGTCAATTATACCCCAATA------AAAATGGTTAAAA--TGCAA--AAT---AAAAAGAAA GATA---TGTGACTAAGAAGTCACATATGACCAT-GACATAGGAAG------CTGGTCAAAGTG >Manis_pentadactyla TTTTTTAAATGACCAGTGTTTACATGTTTTTTTTGAGAGGAAGGAGAGTGGAT---ATAGAAAAAGGCA----------- TGTCAGATGTTAACTAGACTTATTGTTGTGATCATTTTGCAATGTATACAAATA-TTGAATCATTATGTTGTACACCTGA TTCTAGTATAATGATGTATGTTAGTTTTATCTCAATAAAGT-AAAAAAAATTAAAATTTAGAA--AAC---AAAGAAAAA GATA---TCTAAGTAGGAAGCCATATATAATCAT-AGCATAGGAAGAG----CTGGCCAGAGTG >Sus_scrofa AAAATAACAT----------TAAAATTATTTCTGGCAGGGGAGGTAAGTAGAT---ATAG-AAACAATA----------- TGTTGGATGTTAACTAGGC-----ACTGTGATCATTTTGCAA-------------TTGAATCATT--GTTGCACAGGTGA AATACAAACAATTCGGGATGTCAGTGACAGCTCTGTTTTTTAAAAAATGGTTAAAGTTTAACAGCAAC---AAAAAATAA AAGA---TGTGAATAGGAAGTCACATATGACCAT-GGCCTTAGAAGAGCTATCTGGCTAAAGTG >Bos_taurus AAAATAAAATAACTAATT--AAAAATTATTTTTGGTGAGAGAGGAAAGCAGTT---GTAAGGAAAAAAA----------- -AAAGTATGTTAACTAGGTTTAT----GTGATCATCTTGCCA-------------TTGAATCATTATGTTGTATACCTGA AATTAATACAATGCTGTATCTCAATTATAGCACACTT--TT-AAAAATGGTTAAATTTTTTTA--AA----AAAGGAAAA CATT---TGTGAACAGGAAGTTACATATGACCATGGGCGTTGGAAGAGTTAGTTGGACAGAGTG >Equus_caballus TAAATAAAATGACTAATTTAAAAAAAATTTTTTTGAAGAGGAGGAGAGTGGAT---ATAGACAAAGATA----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------TTGGAACAGAAAGTCACATGTGACCAC-AGCATAGGAAGAG----CTGGCCAAAGTG >Ceratotherium_simum AAAATAAAATGACTAATTT-TTAAATGTTTTTCTGAGGAGGAGGAGAGTGGAT-------ACAAAGATA----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------TTTGAACAGGAAGTCACATATGACCAT-GGCATACGAAGAG----CTGGTCAAAGTG >Myotis_myotis AAAATGAAATGGCTAAATT-TTAAATTATTTTT--AAGGGGAGCCGAGTAGAT---ACAGAAAAAGACA----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------TGTGGACAGGAAGTCACATATTAGCAT-GGCGTACAAAAAC----CTGGCCAAAGAG >Rousettus_aegyptiacus AAAGTAAAATGACTAATT--TTAAAATGTTATTTGAGGGAGAGGAAAGTAGAT---ATAGAAAAAGACA----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------TGTGAACAGGAAGTCATATATGGTTAT-GG-----ATAGAG----TAGGCTAAAGTG >Condylura_cristata TAAAAAAAATCACTAATAT-----AACTTTTTAAGGGAGGCAGGAGAACAGAT---ATATAAAATGCCA----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------TGTGAACAGAATG---CATACAACAAT-GGCATATGAAAAG----CTGACCAAGGTA >Erinaceus_europaeus AAACTGAAAGGACTGAATTTTTAAATGCATTTTTGAGGGGGAGGAGAATAGAT---ATATAAAAATCTG----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------TGTGAA-AGGAAGTTACATATAACCAT-GGCATA-GAAGAT----CTGGCCAAAGTT >Homo_sapiens AAAATAAAA-GGCTAATTC-AAAAATAAT--------AGGAGGGAGAGCGTGT-----AGAAAATTACA----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------TGTGAACAGGAAGTCATGTGTGACCAT-GGCTTAGAAAGGG----CTGGCCACAGTG Dog31_LINE >L1_CARN5_3END -------------------------------------------------------------------------------- ---------------------------------------------------------------------------TTTTT TATTTGAGTATAGTTGACACACAATGTTACATTAGTTTCAGGTGTACAACATAGTGATTCAACATCTCTATACGTTATG- -------------------------------------------------------------------------------- ----------------------------- >Canis_familiaris AACAGCCACCATTGAACCACCA-AATG--ATGTTAA------------------GCCATTATTATAATTATTAT---TAA ACTT---------------TTAA-AAAA---TTGTTACTACATGGGAAGA-AT-TTGTGAGGGAGATTCAACTTTC--TT TTTAGAGGTACAATTGTCACATAACGT---ATTAGTTTCTGCTGTGTAACATATTGATTCAATCATTGCA---------- --TTAACTTATTTTATTTTTTATA---CATA-GGTAGAGGGAAT---------GTCAACCTCCTTTTCCAAACCTGTTAG TGACTC-CTATTGTATATTGG----AGAA >Felis_catus AACAACCACAGCTGAATCACTA-AATG--GTGTCAA------------------GTCATTATTGTAATTATTAT---TTA ACTC-----------------AA-AAAA---TTGTTACTACATGGGAAGA-AT-TTTGGGGAGGGATTTGATTTTC--TT TATAGAGTTATAATTGCCATATAACAT---ATTAGTTTCTGGTGTATAACATAATGATTCAGTCTTTGCA---------- --CTAACTTGTTTTATTTTTTATA---CTTA-TTTAGAATCAAT---------GTCAACCTCC-TTTCCAAATCTGTCAG TGACTC-CTTTTGAATATTGG----AGAA >Manis_pentadactyla AACAGCCATGACTGAATCACTA-AAAG--GTGCCAA------------------GTCATTATT---ATTGTTAT----TA ACTT-----------TTACTTTC----A---TTGTTATTTTATGGGAAGAGGTATTTTTGGAGGGTTTTGATTTTT--TT TATTGAGAGAAAATTC-------ACCTCAAATTAGATTCAGGTGTACAACATAATGATTCAACATTTGTA---------- --TTAACTTATTTTATTTTTAAAA---CTTA-TTTAGAGGAAAT---------GCCCACTTCCTTTTCCAAACC-ATCAC TGACTC-CTATTGTATATTGG----AGGA >Sus_scrofa AACCACCATAATTAAATCACCA-AAAG--GTGCCAAGACATTTTCATTGTTGTTGTTATTATTACTATTATTAT----TA ACTTTTAAATTTAATTTTATTTT-AATA---CTGTTACTACATGGGAAAA-GAATTTTGCGGGAGGTTTGA-------TT TTTTGAGATATAGTTTTGACATAAAATTATACTAGTTTTAGGTGTACAACATAATAATTTGATATTTGT----------- -----ATTTATTTTA---TTTTTT---TAAA-CTTAGAGGCTGT---------GCCAACCTCCCTTTTCAAACTGATCAA TGACTC-CTACTGTATATTGG----AGAA >Bos_taurus AAATGTTACAACTGAATCACTA-AAAT--GTGCCAAGACATTATTATTACTGTCATTGTTATTTCTATTATTAT---CTA ACTTTTAAATTTAGTTTTATTTT-T-TA---TTGTTACTACAGGGGAAAA-GT-TTTAAAGGGAAGTTTGATTTTTCTTT TTTTGAGATATAGTTGACACATAACATTCACTTAGTTTTAGGGATATAACATAGTGATTTGATACTGGTT---------- --ATAACTGAT-------TTTTTT---TTAA-CTTAGAGGCAAT---------GTTAAATT--------AAATCTATCAG TTACTC-CTATTGAATATTGGGGAAAAAA >Equus_caballus AACAGCCATGACTGAATCACTA-AAAG--ATCTTAA-------TTATTATTATTATTATTATTATTTTTATTAT---TTA ACTT--------ATGTTGTTTTT-AAAG---------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------CTTA-TTTAAAGGCAAT---------GCCAATCTCCTTTTCCAAACCTGTCAA TGACTC-CTACTGTAGATTGG----AGAA >Ceratotherium_simum AACAGCTATGACTGAATCACTA-AAAG--ATGCCAA------------------GTCATTATT---ATTATTAT---TTA ACTT--------ATATTATTTTT-AAAA---------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------CTTATTTTAGAGGCAATAAATTTAGAGTCAATCTCCTCTTCCAAACCTATCAA TGACTC-CTACTATATATTGG----AGAA >Myotis_myotis AATTGGCATGACTGAGTCATTA-AAAG--CTGACAA------------------GAGATTTTT---ATTGTTAT---TTG ACTG--------ATGATAATTTT-TAAA---------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------CTTA-TTTAGAGGCTAT---------ATCAATTACCTTTTCAAAACCTATCAA TGATTC-CCAATGCATATTGA----AAAA >Rousettus_aegyptiacus AATAAGCATAATTGAATCACTA-AAAG--ACTCCAA---------------------ATTATT---AGTATTAT---TTA ACTT--------ATGTTATGTTT-TAAA---------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------TTTA-TTTAGAGGCAAT---------GTCAACCTCTTTTTCCAAGCCTGTCAA TGACTC-CTATCATATATTGG----AAAA >Condylura_cristata AACCGCCTCAAATTAACCATTA-AAAGTCACTCTAA----------------ATGTCACTCTTTGTATTATTAT---TTA ACTT----------GTAGTTTTT---AA---------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------TTTA-TTTACTGACAAT---------CAAAGCCTCCTT--------------- -------------------------ATAA >Sorex_araneus AGCAGTCACAACTAAATCACTACAATA--GTGCCAT------------------CATTTTACAATGATTCTCAT---GTA AGTT---------TGCCCATTTAAAAAA---------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------TTTA-CTTAGAACAAAA---------GTTGAACTCCTTTTCCAAGC--ATTAC TGATTG-CAAATCTATATTGA----AGAA >Homo_sapiens AACGTCCATAACAGAATCACTA-AAAG--ACATCAA------------------------------ATTATTAT-----T ATTT--------------------AAAA---------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------TTTA-TTGAGAGGCAAT---------GTCAATCTGTTTTTTCAAACCTATCAG TGACTCTCTATTGTATATTGG----AGAA Dog31_LTR >ERV54-EC_LTR -------------------------------------------------------------------------------- ------------------------TGTTAAAAAC---------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AAGACAACA------------------------------------------------------------------ -------------------------------------------------------------------------------- -----------------------------------GGCCCAAAATGGAGTCACTTATGCTAAGCCCCACGTCACCAAACC GAGACTTAACTTAATT-ACAGTTTCGGCTCTCCCAGAAATGGAATCTTAAACCAGTCAATCAGGAATCACCTGATCAGCA C----TAGTTAGGTAATCTGCCTGATAGAC------------------CCCTGCCATC----CCCTAAAGGAAAGTAACC TTGCAATAACCAATCCAC-TTTTTTGCCTAGTATAACTTCCTTGTTCCTGCTCCCTTCTGCCTATAAAAGTCTTTCATTT TGTACAGCTCCTCGGAGCTCCTTTCTATCTGCTAGATTGGATGCTGCCCAATTCATGAATC-ATTGAATAAAGCCAATAA GATCTTTAAAAT-----TTACTCAGTTGAAT------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------TTTGT TTTTT-AACA---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- 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-------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------- >Canis_familiaris AAAACAGGCTGC--------------------CAGATT--------------TGGCC-ACGGG-------CCAGCATTGG CCAACTCT-GCTCT---GCAC---AGTTAAAAAC---------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AAGACAACAGGGGCTCCTGGGTGGCTCAGTGGCTGATCGGCTGCCTTGGGCTCAGGGCATGATCCCGGGGTCTGG GATGGGTTCCACAGCTGGGTCCCTGCAGGGAGTCTGCTTCTCCCTCTGTCTGTGTCTCTGCCTCTCTCTGTGTCTCTCAT GAATAAAATAAATCTTTTAAAAAAACAAGACAACAGGTCCAAAATGTAGTC----ACGCTAAATCTGGGGTCACCAAACC GAGATTTAGCTGA----TAGTTTCCA-CTCTCCTAGAAACGGAATCTT-AACCAGTCAGTGAGGAATTGCCTAAGAAGCA C----TCCTTAGGTAATCTGCCTGCCGGCCCCCTGTCCACCGCCCCTGCCCTGCCATC----CCCTAAAGGAAAGTGACC TTGTCAGGACCGACCTGC-TTTTTTGTCTGGTATAACTT-CTTGTTCCCA-TCCTTCCCACCTACAAAAGCCTTTCATTT TGTACAGCTTCTCAGAGCTCCTTTCTAGCTGCTAAGTGGGATGCGGCCCAATTCACGAATC-GCTGAATAAAGCAAACAG GATCTTTTCACT-----TTACTCAGTTGAGC------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------TTTGT TTTTTCAAGAGCCTGGTGGCAGTGGTAGGATACA-AGAGACTTC-------TTCAGGGA------------GCCAACCCT TTGAGTTCT----CTTTCTTGCCATTTCCAGGGTCTGTGGATAAGGTCCTCTGAGCTCCAAGCTCCGCTCCGGAAGAATT CCCGAGGTAATCGGCTTTTCAATCCAGGGCTGGCAGGTCAGTCTAAACTGGCCTTGACGGGATCCCTGGGTGGCGCAACG GTTTGGCGCCTGCCTTTGGCCCAGGGCACGATCCTGGAGACCCGGGATCGAATCCCATGTCGGGCTCCCGGTGCATGGAG CCTGCTTCTCCCTCTGCCTGTGTCTCTGCCTCTCTCTCTCTCTCTCTGTGTGTGACTATCATAAATAATAAATAAAAATT AAAAAAAATAAGTAAATAAACTGGCCTTGACTGGTCCCCTGGTTGGTCCATGGTCCCAGTCCAAGGCTTAGCAGATCAGC TTGAGCTAGCAGATAGATGCCCCCTGGATCCCTAGCCCC-------TGGTTAGTTCCTAGTCCCCA-TCTGTTGGGATCT GCTCATTTGGCCTAGAGATCCACACTGGGAGCTGCTGGTGCTGCAC-ACCGAAGGTCTTCCCTTGGCCGGTC-------C ACGGTACCATCTCTCTGGTTACTGCTAAAGTCCTGAGCT--GTTTCCTTGGTTACTGCTGGTCTGTATTACTGTGCAAGT GAAGTAAAGGAGTAATAGATCCACTTTTAACAGGAATCCCAGAAGCCAAAGCTGCAAAATTGGTGGGCACAGCAGGCCAA GCAGTGAACAGCTGTAGGAGTGCTTGCCACGTAACTCTAAGGCTCTTGTGCTAGGATAAGCTGGTCACAACATGGGTTAG ATGGACTCCAGGACACCTGCCCACCTCAAGAAAATTTCCATGCAACAAGGTACAAGGTAAAGAGCACCATCCAATCCCCA ACCCAGTGGCACATTGCTCTTAGGTATTAATTTGGCTCCAAGGGACCAAAGGCTTAGCTAAGGAA-TGGTATCCCTCTAG TCTCAAAGACTTGAGCATGCCAACTTCTGGTAGACCTGCTTGTTTTATACCTAAGAACTATGGTCTTGAAAGCTGTAGAT ACCTCCAAGAAATGACAAAAATCTCATGAAGACAAGCTAGAAGTACAATGGCCATCATGGAGAAGACAACATCATTCAAG ATTTCATT------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------TGAAAGCAAGGGTTCCCAAATCAAACAGAATAGGATACCTATTTTGATTGGCAT GCAGAAGCC------------------TCCAAAATTGCTTCATTGAAAGATTGTTTGCAAAAGGTTAATAAAAAATCAAA GACATAAGAGGTACCTAAAACAAAAGACTAAGATGTCACTCCTACTGCTCCCCTCTAA---CCTTTATCTGAAATACTC- -GGTCTGCAGATCCTCTGCCTGAATTGCCTTTTCACTAGGCAGAGTTGGCCTGGGACCCTGGGTGGCTCAGTTGGTTAAA TGTCTGCCTTCAGCTCAGATCACGATCCTTGGGTCCTGCACCGAGCCCTTCATCCTGCTCCCTGCTCAGCAAACAGCCTG TTTCTCCCTCTATCCCTCCCCCTGCTCATACTTTCTCTTTCACATGTTCTCTCAAATAAATACATGAAATCTTAACAAAA AAACTGAGGTCAGCCAAACTAGTGGCCTTACAGACACCCCCATATCTATCCTTACAGACCTTTCATATGGGCCCCTCCCA GGGTTAGCGGGACTCTGAGAGATTTCTCTGGTAAATTACTACCGGAAAATAACTACCAGTTATTCCCTTCAACAACCAAG GGGAAACTAAAATTGAAATTAATGGAAATCCTTACCAAATTGTAGTAGATACTAGAGCTATACTCCTCTCTACTTTAAAC CCTACTCTGGAGCCTCTAGAT-AAACTGTGGGAAAACTGGCAGAAGTTGGCAAAGGGTGATCTGTGTGTCTCA------- -------TTCTGTGTCCTGAGAATTGTCTAAGTC-TTCTCCCTTTTGGCTGGGGGCGGGGTGGGGTGGGGGGTGCCAGTA GCATCCTTTGCAAGCCCCCCCTGGGAATGCCTCTTGTATCCAA---GGGTGGAGAGGGATGGTTCAGGACTGCCAGGACT ATTCTTTCCAGCTGTTTTTCCCAGCTGAAACCTGACAAGCTATTTAAAAGGA---TTTTTTAAGTAGCTCTGTGGTCAGA AGTTGGCCAAATCGGAA---GATATTCAG-ACCTGATAGTAACGGTTTTTAGCTCC-CTCCTCTCAGCTAAGCTTACCCA AAGAGGGGAAGGAACACATCGGGAAGACAAACCTCTAAATCTAGAACATAGGAATCTTTTTAAAGATTTCCATCTTATTT GAATATCTCCTCCCTGTATAAAAAGACACGAATTGACAATAAGGTAGTTGGGCAGGAGGGTCAGCCCTTTTG-----ACT TTAAGTCACAACCCCATCCTTCGAGGAATTAA-------AGCCTTTGTCTTCCAAACTGAGTCTTTACAAGAATGCAAAT ACAGCTCTGGAGGCAATTCAAAATCCACTTATCCTTTTAACCAATCCCCAAAACTCACCCATTCATCTCAAAAGGCTCAC AAA----ATTCAAGATTTAGGAAACAGAAATCCTTAGAAGGAGGAGCTTGCATTCTCTCCCTGTGCTTTTGAGATGTAAA TGTTCTACATGGTCTCT---CTAGGAACTGAGGTAATTCTTATCAGAAGGGGGGGGGAAGTTGCGGCAAGGATATTCGAA AAGGAGGGAAATGAAAAATCCT---------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------GA AAGTCTTCTCTACAAATATTGGTAAAAAGTTTAAACCATCAGAATGGGTAACCTTAACTTATTGCAACTTCTAGAAACAC AATTTGGATCTAGCTGTTCTTTTAGAAACTAGTGAG-------TTACTGTACCCA---------TCTTGTGCTTAAAATT ATAAAACAACAGCTGTAAGGTCTGTTTGTGTCTGTGTGTATGT--------------TACATATGCTGTAGATGTGTGA- -----TTTAAAAAAAAAAAAACCTCTGGATGGTACTGCCAAAATTAATTTT----------------------------- -------------------------------------------AAAAAAGAGTAA------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------TTAAAGAGAAATAAGCA TTTACCAAATTAAATATTCTTAGACTCTTAGAAATAAAAGAACTAACCCGAATATTTTTCAGGTTTACCTGATTGGGGAT AGTCTTTGGCTTAAAAA--------------------------------------------------------------- ---------------------AAAAGCAAGTCTCAGCTTGTTGGTTTAATTAAAACAGGCATGTATTTAGAGCCACCAGC ATTAAATATACGACCTGTATTCTACCTGGGTTTTCTACTCAGATAGACTGTTCCCTCTGTTACAAAGTCTGTCAGCAAGA AAAATATCTTAGTATAATATTAGAGTTAACTTTGTTTAATGTTTGTAAAATTTTCATGGGTAATTTAA--ATGTTAAAAA CAGGGGTGCCTGGGTGGCTCAGTTGGTTATACGCAGCTGCCTTTGGTTCAGGACCTGGGATGGAGCCCCAGATCAGGCTC CCTGCTCAGTGGGGAGTTGGCATCTCCCTCCCCCTACCCCCTAACTCATGTTCTTTCTTTCTCTCTCTAGCAAATAAATA AAATCTTTAATAATAAATATA-TTAAAGA-------CAAGTGATTTAGATAGATGTAAGTAGGATAAAAGTTTTTAGAAT TTTGCTATA-----TTAAATGATGTATAG------------TCACTGAG----TAGATCATTTTCAAATAAAATA----- ---------TAATAACACATTAATTCTTGATCATAGGTGTATCTAATTTTACTTTTGG---CTTAATATAGAGAAACTTA AGGTATGTGGGTATGTTAGTAAAGATGTTTCATGCAACACTGAGAAATCCACTATGAGAAAGAATATACCCCTTCAAGTT ATGAAATGTCTTT-TACGTTTGTTGATCCACAGAATGGTAGCGTAGGAGACAGTCTGTGATTGCTTACTTCTTAGTTTTT GCTAGGAAAT-AGGATTCTGTGGATTAAGAATCCTAATAAATAGAAGTACCTGAACCTCCTTAGAAATAGCAAGGGTGAA GGAAAACAACACTATGTATT------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------AAGAGTAGGTAAGGAAAGTAAAATGACTGGTTGTTTCAGAAGGAGAAAAAACATAC ATATGGGACAAGATATGAATGGATATAAAAACAGTTGTAGGTTTGTGGAAATGGAATCCTGCAGAG-GGATTTTACATGT GATCAAATAGGCTAAGATTGGAATGGATTTATTTATTAAGTTTTTCTAATGAGTTTTAATAGCAAAAGTGCACTGGTACA AAATTAGAATTTGATTCTCTCCCTGCTAAAAGGACCGTGTTCTCTTGGACCTTTGGTATGCTTTAGATCAGAGATGGTGA AAGTTGCCTTATCTTTTAAGTAACCTGCCTGGGGATCCCTGGGTGGCGCAGTGTGCCCTGCCTTTGGCCCAGGGCACGAT CCTGGAGACCAGGGATCGAATCCCACATCAGGCTCCTGGTGCATGGAGCCTGCTTCTCCCTCTGCCTGCTTCTCCCTCTG CCTGCGTCTCTGCCTCTCTCTCTCTCTCTCTCTCTGTGACTATCATAAGTTAAAAAAAAAAAATTAAGTAACCTGCCTGG GCAGCAAAGATTTCACGTTTTAACCAAAATAACTTCC-TATGCTTCACATTG---TCATCAGCTCTTGGGTTACTTAAGA AAATCCAATCTTCTCAAAACTAAAAGAGCTAAATTTTGTTCACAGCTATGTAACCATCTGCATTTGCCTTTAACATCATT TTCTACTGTCATTTTGGTTAAACAGATAATGAAGTATTATTTCATAATGATCTGTGATCCTATTTAGTCAAA--CATTCA AACTGCTTGACGTTTTGACAACTTCCTAAAATCAAATTCTAAATGGGGGTTTTTCTCCATCTTCAAGTAACTCTGAAATT TCCCAGAGGGTCCCTGGAAAATCTCAAAGGATTTATCTCTCATCTGGTAAAATATCAAACTAATTAGGTTTATTTGCTAT TAAATTATGTGGGAAGCATTATCAAGT--AAGAGATA-CTAAACCTCCTTAGCCTATACCTGTATGAGCAAAGGTCATTA ATACAAGTGTTCTAGAAAATGTGTGATACTCTTAGAAATCTGATATGTCCCAGTATAATTTTATCAGTCATAAATGCAAT TATTACCTTAAAATGTTGTGCATCGCACAAATAACCAAATTTCCTTGTCATTTCCATTACGAAGAACCCTAACGATGAGC ATCTTTTAAGTCTTTTGACATTTACAGACTACTTACTGTTTTACTCTGATGCTTTTGCAGAAGTGAGACTCATGACAAGG ACCCTACCAGGAACTCCGGATCACTGACACGGCTGCCATATTACAAGGTATTGAAACGTGGGGTGCATATTTCACAGCTG AAGAAGGCCCCACCTGACATCTGGTCCTGTGCAAATGCTAGAGACCTCAAAATCAAATTGGCTATGAAGAGAAACAGCCA ACATCAAGGTAGACTGCTTCTGCCCAAGACATCAGAC-CAAGTGAGTTCCTCTCTATTCCTCCTTCCCTCCCTGACCATC CTTTTCCTAATTCTTAAA-----CAGGCCTTTATGATTCATTTGCCCATATTTTGCTCTGTTCTGGCCTGAAAGATAATG CCACTGTTCATATGCTCAGGGTGCTGCAAACAGCGATAGCCCTATCCCCAAACTACTGCTGGACTGGCCCCAGTGCTGCC GATCCTGTAGTTCTGCCAATCACATACTTCT--CTGATTGCCAAACACCTTGATTTCTCTGGAACTAAGTAAGTTCCCTC TCTATGAGGTCAGGTCCCT-----------------TTCCCCTGCCTCAGTTTAACAAGCCCAAACCCAGGGAACCCTGT ATCTGAGCTCTGTACCAAGAAGGGGACA-----TGAGAGTAACCAGAACAAAACTGCCTGTGTGGTCTACACAGACTTAT ATTTAACTGGCCTCC-TCGCTGTCACCTTCCCAGCCCTGAGCCACAAACTCAAGCAGGAATTACCAGGGGGCATTCGTGA CTACCTAGATAGCTTCCTTTGGTAGAT----CACTGGCTCTTGGCAAGGGTGAGTGCAAAAGAAGCTATTGCCAGGACCT CACCTTAACCCTTAAAGTTACGTATTGCAGAATTCCCTGTGAAAGTC-ATAGCTGCCAACAAAAAATCCCTGGACTCTCT AGCCAAAGTTGTTCTTGAT------------------TGTTGTTTCAGCAGAGCAAGGAAGTGTCTGCACTGTGGTCAAT GTTACTTGCTGCACTGAATGGACACTTTGGGGGAAGCTGAGCTCAGCTGCATAAGACCACTGTACACAGCCAGCGGGCTA AAGAAAGGGACTCCTTCAATGGGATTTGATCTTGATGGCTATGGGTTTTGGG-GACTATGGCTCTGAGGTACTCCAGACA TTGGGAATTGTCCTGCTTATAATAATCATAGGGGCATCTGGGTGGCACAGTGGAGTAAGCAGCCAGCTCTTGGTTTTGGC TTGGGTCATGTTCCCGG--------------------------------------------------------------- ------------------GGTCCTGGGATCAAGGCCC-TCACTGGGCTCTGTGCTTAGCA-------------------- -----------------------GGGAGTCTG-----CTTGGGATTCTCT---------------------------CTC TCCCTCTG---TCCTTCCTTCCACCTGCGCCCCCCCAAAG-------------------------TGTGCTCCATAATAA ATA-----------AATAAATCTTTT---AAAAAATCGTAATAATCTTCCTGGTT---------CACCGTATTCTC-TCA CAAGC---------------------TTTAAATGCATGTTCATGTTCACAGTCTCTCACAAGCTTTAAATGCACGTTCAT G----------------TTCACAGCCACTACCCACCAAGCAACTGATCTCATTGAGAATGGAACGTCGGGATGCCTGGGT GGTTCAG-------------------------------CAGTTGAGCGCCT----------------------ACCCTTG GCCCAGGGCATGATCC-----TGGAGACCCGG--GATTGAGTCCCACATCGGGCTCCTG--------------------C ATGGAGCCTGCTTCTCTCTCTGCCTATGTCTC---TGCCTCTCTCTCTCTCTGTGTCT--------------CCCATGAA TAA----ATAAAATAT------------------TTTTAAAAAGAGAGAGACA------------------------GAA TGG--------------AACGTCAGAAAGA------------------------------------------------AA TGAAGAGAGGGACT---------------------------------------GAAT--------GTGAACA----TGAA CCTATAGTCATG----------------------------ACTTG-TGAATAACACA----------------------- ----------------------CCAAAA-----------------------GTCAGCAAAAAAA---------------- ------CACCATCACC---------------TGTGAATATCAACAGATTTGGCAA---------------AACTCAACTT CCAAGTGG-------TGACTGTGAGTAGCGCTAA-----------------TGTCATAAACTTTGATCACATCTCTCAG- ----GTTTATTAGCGTCTG------------------------------------------------------------- ---------------ACCAAAACAGGGAATTGATAAAAATAAAAAATAATGAAATAAAAATTAAAACAAAACAGGCCCAT GTCACCAAACTTCACAGTTTCCACTCTCCCAGAAATGGAATCTTAAGCCAGTCAATGAAGAATTGCCTCATCAGCGCTAA TTAGGTA--------AACAGACCCCTGCCATCCCTTAAAGGAGAGTGACCTTGTC--ACTAATCGGCTTTTTTGTCTACT ATAACTTGATTGTTCCTTCTCCCT--------------TCTTCCATTTTCTACAGCTCCTTGGAGCTCCTTTCTCTACGC AGGATGGAATGCTTCCTTGTTCACAAATCATTGAATGGAGCCAG-TAAGATCTTTAGAAAATTGACCCAGTTGAGCTTTG TTTTTTAACA---ACAC---CATGAAGGGAAATAGCTACTCCTAA------ATGATTCT----------ATCAGTGCA-- -CCAAAATA >Felis_catus AACACAGACAGGGAGC----------------CGGATT--------------TGGCCCGCAGG-------CCATTGTTTG CCAACCCCTGCTCT---ACGC---TGTT-----G---------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AAAACAACA------------------------------------------------------------------ -------------------------------------------------------------------------------- -----------------------------------GGTCCAAAATAGAGTCACTTGCACTAAGACCAGAGTCACCAAACT GAGACTCAACTGA----TAA-CTGTA-CTCTCCCAGAAATGGAATATTAAAC----CAGTGATGAACT----AATAAGCA CTACTTACTTAGGTCACCTGGCTGACAGCC------------------CTCTGCCATC----TACTAAAGGAAAGTGACT TTGTCGTGACCAACCTGCTTTTTTTGTCTAGTATTACCTCCTTGTTCCCATTCCCTCCCACCTACAAAAGCCTTTCATTT TGTACAGCTTCTCAGAACCCCCTTCTATCTGCTGGATGGGAGGCTGCCCAGTTCACCAACT-GTTGAATAAAGTAAGGAC GATCTCTGCACT-----TCATTCAGTTGAGTTTGGGGTTTTTTTTAATGCTGATTTTATTTATTTGGGGGGGGGGTACAG AGAGAGACAGAGAGACAGAGAGAGAGAATCCCATGCAGGTTCCATGCTGTCAGTGCAGAGCCCGACACAGGGCTCGATCC CATGAACTGGGAGATCATGACCTGAGCCCCAGTCAAGACTCGGACACAACCAAATGAGCTACCAGGTGCCCCAAGTTTGA GTTTTTAACAGTTTAGTGGCAGTGGTAAAACGCAGAGAGACCTCCGGCCCCTTCAGGAATGGGAAACATATGTGGACCCT TAGACTTGTCTAACTTTGTTGCCA-TTCCAAGGCCCGTGGATAAGATCCTCTCAGATCTGAGCTCTGCTTGTGTTGAGCT CCCGGTCTGCTTGGCTTTCCAGGCTAGGATTCTTGGGTCGGTCTCAA-TGGAC-TGA----AGTCTCTAACACAGCACCA GGC----------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------CAGTCCTCGTCCAG-------------GGC TTGAGCTGGCAGAGGGT-TCCTCCTGAAACCCGAATCCCCAGCGCCTGGTTAGTCCCTTGTCCC--ATATGTTGCCGTCT ACTGGTTTGGTCCATAGTTCCACATTGGGAGCTGCTGGTGCTGC-TCACCTAAGGCCTTCTCTTGGCCGGCCCACAGTCC ATAGTACCATGTCTTTGGTTACTGCTGGCATCCACAGCTCCACATCCTCAGTTACTGGTGGTTTCTGTTCACGTGCACGT AACGTAAAGGAGTAATACATCCATTGTTACTGGGAATCTCAGGAGCCAAAGCTGCAAAACCGACGGGCACGGCAGGCCAG GCACTGAAAAGCTGCTGGGGTGCTCACCACCTAACTCGAAGACTCTCGTGCTAGGATAAGCTGGTCACAACATGGGCCAG A----CACCAGGCCACCTGCCAACCTCAAGAAAATCCCCCTGTAATGAGGTACAAGGTAA--GGCACCATACAATCCCCA GCTCGGTGGCACATCCCTCTTAGGTATTAATTTGCCTCTGAAGAACCCACAGCTTGGCTGAAGACAAAGAGATCCTCTAG ATTCAAAGACTTGAGCATGCCAACTTCTGGTACACCTGCCTCTTTTATCCCTGAGAATTATGGCCCTGGAAGCTGTAGTT ACCTACAA-AAATGACAGA-CTCTCACTAAGACAAGCCAGAATTACAATGGCCATCATGGAGAACACTCCAACTAGACAT CATTCGTTTAAGAAATGCACTTGAAAGGGGCACCTGGGTGGCTCAGTCGGTTGGGCATCAGACCTTGGCTCAGGTCATGA TCTCATGGTTTGTGAGTTCGAGCCCCACATCGGGCTTTGTGCTGACAGCTCAGAGCCTGGAGCCCGCTTCAGAGTCTGTG TCTCCTCCTCTCTCTGTCTCTCCCTCCCTTGCTCATGCTCTATCTCTGTCTCTCAACAAATAAATGTTAAAAAAAAAAAA TTAAAAGAAAAAAAAAGAAATGCACTTGAAAGCAACGGTTCCCAGGTCAAACAGAATGGGATACCTATTTTAATTGGCAT GCAGGAGCCTCCAAAAGGCTTCAAGATTCCAAAATCGCTTCATTGAAAGATTCTGTGCAAAAAGCTACTACAAAATTGAG GACACAAGAAGTACCTAAAACAAAAAACTACGATGTGACTCCTACTGCTCCCCTCTAGTCTCCTTTACGTG-AGCACTCA GAGTCTGCTAATCGTCTATCTGAACTGCCTTGCCACTCTGGAGAG----------------------------------- -------------------------------------------------------------------ACCGCACAACC-- ------------------------------------------------------------------------------GT AAACAGAAGCCTGCCAAACTAGTGGTCTTCCAGACGCCCCCATATCTACCTTTGCACAC--TTCACATGGGCCCCTCCCA GGGCTGGCGGGACTCTGGGGGACTTC-CTGGTG-----------------AACTACTAGTTATTCCCTTAAACAGCCAAA GGGAAACTAAAATTGAAATCAATGGAAATCCTGGCCAGATTCTGGTAAATACTAGAGCTATACTCC---CTACTTAAAAC TCTACTCCAGAGCCTCTAGATGGGATTGTGGGAAAACTGGCAGAAGTCAGCAAAGGGTGACATGTGTGTCTTCTGGGAAG TCTTGTTTTTCATGTCCTGAGAACTGCCTAAGTCTTTCTTCCTTTTGGCTA-----TCTCTGGGGTTGGCAGAGCGAATA GTATCCTTTTTA--CCCTCCCTGGGAATTCCTCTTACATCCAAGGGGGGTGGGAAGGGACTATTCAGTACTGCCAGGAAT ATTT------ACTGCTTTTCCCAGCTGAAACCTGACAAGCTATTTGAAAGGATTTTTTTTTAAGTAGCTCTGTGGTCAGA AGTTGGCCAAACTGGAAGCTGATACTCAGAACCTGATAGGGACTGTTTTTAGGACCTCTCCCCTTAGCTAAATGTACCC- -AGAGGCAAAGAAAAACATTCCAAGGACAAAGTTCTAAATCTAGAACACAGGAATCTTTT----GATTTCCATCTTAGTT GGAGATCCTCTCCCAG-ATATAAAGACACAAATTAAAGATAATATAGTCGGGTGGGAGAGTCAGCCCTTTTGAAATCATT GTAGATCACAACGCAATTCTTT-AGGAATTAAGAACAACGGTCCTTGTCTTACAAACTGAGTCTTTATGAGAACAGAAAT GCAGCTCTGGAAGCAATTCAAAGCCTACCTATCCTTTCTACC-CTCCCCAAACCTCA-CCACTCTCCTCAAAAGGCTTGC AGGTATCATAAAAGATTTAGGAAACAAAAATCC-CAAAGGGAGGAACT--CAATCTTTCCCTGTGCCTTTGAGATGTAAA TGTTCTATCTGGTCTCTAGGCTAGGAACTGAGGTCATTCTTATCAGTAGGGGGGAAAAAATGG-GGC-AGGACATTTGGA ACCCAGGCAAATGAAAAATCTTAAAAGTCTTCACAGGGGCACCCGGGTGGTTCAGTCAGTTAGATGCTTGACTTCAGCTC AGGTCATGATCTCATGGTTTGTGAGTTCAGGCCTGCGTTGGGCTCTGTGCTGACAGCTCAGAGCCTGGAGCCTGCTTCAA GATTCTGTGTCTCCCTCTCTCTCTGCCCCTCCCCCACTCATGCTCTGTCTCTCTGTCTCAAAAATAAACATGAAAAAAAA AAGTCTTCTCCACAAATATTAGTAAAAAGTTTAAGCCATCAGAACAGGTAACCTTAAGTTATCCCATCTTCTAAATCCAC AATTTGGATCCAAGTGTTCTATTGTAAACTAATGAGCTCTGCATTGGTGTACCAGTTAAAATTTTTTCATGGTTAAAATT TTAA---AATAGCTGTAAGATGTGTTTGTGTCTGTATTTATGTTTATATATGTCTAATATGTATACTGCAGATGTGTGAT ATTTCTCT------------GTCTCTGGCTGGTACTGCCAAAATTATTTTTTTTTTAATTTTTTTTTCAATGTTTATTTA TTTTTGGGACAGAGAGAGACAGAGCATGAACGGGGGAGGGACAGAGAGAGAGGGAGACACAGAATCGGAAACAGGCTCCA GGCTCCGAGCCATCAGCCCAGAGCCTGACGCGGGGCTCGAACTCCCGGACCGCGAGATCGTGACCTGGCTGAAGTCGGAC GCTTAACCGACTGTGCCACCCAGGTGCCCCCAAAATTATTTTTTTAAGGTCTATTTAATTAGTTTAAAGCAAAATAAGCA TTTACCAAATTGAGTACTTCTAGACTTTCAGAAACATAAAATCTAACCCAAATGTTTTTCAAGTTCACCTGATCTAGGAT AGTCTTTGGTTTAAAAAAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAAAGAGAGAGAGAGA GAGAGAGAAAGAGAGAGAGAGAGAAGCAAGTTTAGGTTTGTTGGTTTCATTAAAACAGGCATGCATTTACAGTGA----- --------------TTTTATTCTGCTTGGGTTTTCTAGTCAAATAGATTAAT-GTTCTGTTAC---GTTTGCCAGCAACA AAAGTAACCTAGCATAATGC-----CTAATTTTCTTTAGTGTCTGCAAAATTTTCATGAGTAATCTAAATATGTTAAAAG CA----------AGTGATTTAGATAGATGTAAG----------------------TAGGATAA-----------AAGTTT CCAGGTGAA-----------------------------------------------------CTTTTCAGCGA------- -------TGATTATGAGTATACTTACAGAGTTTCCCCAAATATTTTTGATAACT----------TGAAACTTTATAG--T TTTCCTACATTAAGTTAAATGGTACATAGTGAACATTTAGATCACTTAATATCTAGATCATTTTCAAATAAGATAAAATA ATGAAACATTAATGAAACATTAATTATTGAACACAGGTTTATCTACTTTTACTTTGGGTTTCTTATTGTAAAGAAACGTA AGGTATGTGGGTCTATTAGTA---ATGTTTCATACAACATTGAGAAATTTACTGTGAGGCAGAATAT---TCTATAAATT ATGAAGTGTATTTGTGAGTTCACCGATCCACAGAATGCTGGTGTAAG----AGTCCACAATTACATACTTCTTAGTTCTC ACTAGGAAATAAGGACCCTGAGCTTTAAGAATTTTAATCAGTGTATGTACTTGAAACTTCTTAGAAATAATAAGGGTGAA GGGAAACA--AGTGTGTATTAAGAGTAGGCACGGGGGGGCGCCTGGGTGGCGCAGTCGGTTAAGCGTCCGACTTCAGCCA GGTCACGATCTCGCGGTCCAGGAGTTCGAGCCCCGCGTCAGGCTCTGGGCTGATGGCTCAGAGCCTGGAGCCTGTTTCCG ATTCTGTGTCTCCCTCTCTCTCTGTCCCTCCCCCATTCATGCTCTGTCTCTCTCTGTCCCACAAATAAATAAATGTTGAA AAAAAAAATTAAAAAAAAAAAAAAAAGAGTAGGCACGGAAAGTAAAATGACTGGGTCTTCCAGAATGAGAAAAA----AC ATATAGGACAAGATCTGAATGGGTATGAAAAAAATTGTAGGCTTTTGGAAAAGGAATCTTGGGAAGAGAATTTTGCCAGT GGTCAAGTGGGCTAATACTGGAATGGATTTAT---TTAAGGTTTCCTAAAGAGCTTTAACAGCAAAAGTACACTGGTACA AAACTAGAATTTGATTTTCTCTCTGCTAAAAGGACAGCTTTCTCTTGGACTTTGGGTATGCTTTAGATTAGAGATAGTGA AGGT----TTATCTT----------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------TTATGTAATCTGCCTGG CCAGCAAAGCTTTTTTGTTGTAACCAAAATAATTTCCGGGCGCTTCCCATGGTCTTCATCAGGTCTTGGATTACTTAAGA AAATCCAATCTTCTCAATAGTAAAAGAGCTAAATTTTGTTCACAACTATGCAACCTTCTGAATTTGCCTTTATCATCATC CTCTATTGTCCTTTTGGTTAAACAGATAATTAAGTATTATCTCATGATGCTCTGTGATCCTATTTAGTCAAATGTGTTCA AATTGCTTGATGTTTTGACAACTTCCTAAAATCAAATTCTAAATGGGGGCTTCTC-CCACCTTAAAGTAACTCTGAGATT TCCCAGAGGGTCCCTGAAAAAATTGCAAAGATTTGTCTCTCCCCTGGTAAAATATTAAACTAATTCGGTTTATTTGCTGT TAAGGTACATAGGAAGCATTATCAAATACAAGGGATGCCTAAACCTCCTTAGTTTGTATTTACATGGATGCAGGTTATTA ACATAAATGTTCTACAGACTGTAAGAAATTCCTAGAAATATGATGTGTCCCAATATAATGTCACCAGTCATAATTCCAGT TAT---CTTAAAATGTTACATATAGCACAAATAACCAAATTTCCTTGTCATTTCCATTATATTGAA-CCTAACAATGAGC ATC-TTTAAGTCTCTGGGCATCTGCAGACAGC-CACTGTCTCACTCTGATGCTTTTGCAGAAGTGAGACTCATGAAAAGG ACCCTACCAGGAACTCCTGATCACTGACGCCACCGCCAAATTACAAGGCGTGGAAAC-TCAGGTGCATATTTCACAGCTG AAGAAGGCCCCACCTGACATCAGGTCCTGCGCAAATGTTGGAGACCTCGAAATCAAACTGA----GAAGAGAAGCGG--- -----------------------CCAAGACCTCAGATGCAAGAGTGTTTCTTTCCATTCCTCCTTCCCTCTCT----ATC CTCTTCTTAATTCTTACAGTACGAAGGTCTTTGTGATTCATTTGCACATATTTTGCTCTGCTCTGGCCTGAAAGATAATG CCATGGTTCATATACTCAAGCCATTGCAAACAGGGATAATCCAACCTTGACACGACTGCTGGATTTGCCATAATGCCGAC AATCCTGTAGTTCTGCCCATCACACACGTCTCCCTGATTGCCAAATGCTTCAGTTTCTCTGGAACTGAGTCAGCCCCCTC TCTATTAAGTCAGGCTCCTCAACCCCTGGGGGTCTATTTCCCTGCCTCAGTTTAAGAACCCCAAACCCAGGGAACATTGT GTCCAGGCTCTGTACAAAGAAAGGGACACAAAGCAAGGGTAACTGGAACAAAAGTGCCTGTACGGTCTAGAGTCGCTTAA ATTTCACATGCCTCCATGGCTGTCACCTTCCCAGCCTTGAGCCACAGACTCAAGCAGGCATCGCCAGAGGGCATTCATGA CT-CCAAAATAGCTTCCTTTGGTAGCTGCTCCCCTGGCT------AAGAGTAAGTACAAATGAGGCTACTTCCAGACCTT CACCTTAACTCTCGAAG----GTGTTGCAGAAGCCGCTGTTAAAGCCAATAGCTGCCAAC-CAAAATTCCTGGGCTCTCT GGCCGAAGTTGTTCTTGATAATACGAGAGCCCTCGACTACTGTTTTGGCAGAGCAAGGAAGTGTCTGCACCGTGGTTAAC GCCACTTGCCGCACTGAATGGACACTTCTGGGGAAGCTGAGCTCAGCTACGGAAGATCACAGAACCAAGCGAGCTGGCCT AAGAAAGGGACTCCTTCAATGGGACTTGA-CTTGTTTGGTTTGTGTCTTGGGAGACCATGTCTTTGAAGTACTCCAGACA ATAGGAATGATTCTGCGTATAATAATCATAAGA--ATCTTCCTGGTGCGCTGTGTTCTCCCACAAGCTTTAAGT----GC AT-GTTCATGTTCGCAGCTGCTAACCGCCAAGCAAGTGAGGTCACTGGGAATGGAACATCGGAAAAGTAATGAAGAGAGT GGCTGACGTAAAGAATGTGAACCTGAAGTCATGACCTGTGACTGAATACCAGAATCAGCAAAAAAAAAAAAAAAAAAAAA AGTCATCACCTGTGAATACTGACAGAAATCAGCAACACTTGAGAACTTCTAAGAGGTGGCTAGGAGTAATGCTAATGCTT TAAATTTGGATCACATCTCTCAGGTTTAGTCTGATCAAAAGAGGGGAATTGTTTTTTTCTGGTTTTGTTTTTAATTTTAG TTAACATACTGTGCAATACTGGTTTTAGGAAGAGATTTCAGTGA--TTCATCGCTTGCATACAACACCCAGTTCTCATCA CAAGTGCCCTTAGTCCCCGTCACCCATCTAAGCCCAT-CACCTACCCACCTCCCTCCACCAACCCTCAGTTTGTTCTCTT ATTGTTTTCTTTTTCTTTTAACATTTATTTATTTTTGAGAAACAGAGAGCATGAGCAGGGGAGGGGCAGAGAGAGAGGGA GATACAGAATCCAAAGCAGGATCCAGGCTCTAAGCTGTCAACAAAGAGCCTAATGCAGGGCTCGAACCCACAAACCGTGA GATCATGACCTGAGCCAAAGTTGGGCACTTAACCAACTGAGCCACCCA-AGTGCCCCTGTTCTCTATTATTAAGAGTCTC TTATGGCTTGTTTCCCTCTTTTCTTCTTTCTCCCGTTCCCATATGTTCATCTGTGTTCATTCTTAAATGTGACATATGAA TGAGATCATAGGATATTTGTCTTTCTCTGACTTATTTCACTTAGCATAATGCACTCTAGCTCCATCCATGTCCTTGCAAA TGGCAAGGTTTATTTTTAACGGCTGAGTAATATTCCATGGTGTACATATTCCATACCTTCTTTATCCATTCATCAGTCAA TGGACATATGGGCTCTCTCCATAGTTTGGCTATTGTTGACGATGCTGCTATAAAAATCAGGGTTCATGTACACCTTTGAA TCTGTATTTTTGTATCCTTTGGGTAAATACCTAGTGGTACACTTGTTGGATCATATATGGTAGTTCTATTTTTAACTTTT TGAGGAACCTCCAGACTGTTCTCCGGAATGGCTGCACCAGTTTGCATTCCCACCAGTGTAAGAAGGTTCCCCTTTCTCCA CATCCTCGCCAACACCTGTTGCCTCTTGTGTTGTTAATTTTAGCCATTCTGACAGGTGTGAGGTGGTATCATCATGGTTT TCATTTGTATTTCCCTGATGATGAATGACGTTGAGCATCTTTTCATGTGTCTGTTAGCCATCTGGATGTCTTCTTTGGGA AAGTGTCTATTCATGTCTTCTGCCCATTTCTTCACTGGATTATCTGTTTTTTGGGTGTTGAGTTTGATAAGTTCTTTACT GAATTTTGGATACTCACCAAGA-GGGGAAATGTTAAAAATTAAACAT------TTAAAAATTAA---AAAACA------- ---------------AGTTTCTGCTCTCCCAAAAATGGAATCTCAAGCCAATCAATGAGGAATCACCTCATCAGCACTAA TTAGGTAGTTTTCCTGATAGACCCCTGCCATCCCCTAAAGGAAGGTGACCTTGTCTGGCCAATCTGCTTTTTTGTCTAGT ATAATTTCTTTGTTCTTCTTCCCTTCTCCCTATAAAAGTCTTCCATTTTGTACAGCTCCTCAGAGGTCCTTTCTATCTGT GGGACAGGATGCTGCCTGGTTCACAAATCGTTGAATAAAGCAAATTAAGATCCTTAAAAAACTTACTCAGTTGAATTTTG TTTTTTAACA---ACAC---CATGAAGAGAAACAGCTACTCCTAA------ATGACTCA-------ATCAACAGCGCATG CCCCAAATA >Manis_javanica CAAACAGGCTG-GAGC----------------AGGATT--------------CAGCCCACGGG-------CTATA-TTTG CCAACCCCAGCTCC---ACAC---TGTTAAAAAC---------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AAGACAACA------------------------------------------------------------------ -------------------------------------------------------------------------------- -----------------------------------GGCCCAAAATGGAGTCACTTGTGCTAAGTCCCACATCACCAAACC AAGACTTAACTTACTCAGAG-TTTCAGCTCTCCCAGAAATGGAATCTTAAGCCAGTCAATCAGGAGTCACCTGGTCAGCA T----TAACTAGGTAACATGCCCTTCGGAC------------------CCCTGTCCTC----CCCTAAGGAAAAGTGACC TCGTCATAACCAACCCACTTTTTTTACCTAGTGT------CCCTGGCCCCCCCTCTTCTGCCTGTGAAAGCCTTTCATTC TGTACAGCTCCTGGGAGCTCCCCC--ATCTGCTAGACGG-ATGCTGCCTACAT---GAATC-GTTCAACAAAGCCAGTAA GATCTTCAAAGT-----TTACTCAGTTAAAC------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------TGT CTTTT-AACA---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- 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-------------------------------------------------------------------------------- -------------CCAC---CATGAAGAGAAACAGATAGTCCCAAATAA--GTGATTCT-------GTCACCAAGGCA-- -CCAAAATA >Sus_scrofa GGCTGGGGCTGGGAGTGGAGGAGGGAAGCAGGGGGATT--------------TGGCCCTCAGG-------CCAGAGTTTG CCAAGCCCCACTCT---GGGC---TGTTAAGAAC---------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AAGACCACA------------------------------------------------------------------ -------------------------------------------------------------------------------- ------------------------------------ACCCCAAATGGAATCACTCACGCTAAGCCCCACATCAACTAACC AAGACTTAA-TTA----TAG-TTCTG-CTCTCCCAGAAATGGAATCTCAATGCAGTGGCTCAGGAATGGCCTGACCAGCA A----TAATCAGGCCCCCTGCCTGGTCGAC------------------CCCTGCCACCCCGTCCCCTACAGAAAGTGACC CTGTAGTCACCACCC----TACTTCATTCAGTGTAACTTCCTTGTTCCTGTTCCCACCTGCC-ATAAAAGTCTTTCATTC TATTCAGCTCCTCCAAGCTCCTCTCCCTCTTCTGAGGG------------ACTCACAGATCTGCCAGATAAAGTCAACGA AATCTTTAACAG-----TTACTCAGTTGAA-------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------TGTTAT TTTGT-AACA---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- 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-------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------ACAC---TGTGAGGAGACACAGATATCCCCAACGC---AGGCTCCC-------AAGGTCTATGCA-- -CCAAAGCA >Tursiops_truncatus AGACCAGGCTGGGAG-----------------CGGGTC--------------TGGCCCCCAGG-------CCAGAGTATG CCACCCCCTGCTCT---ATGC---TGCTAAAAGC---------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AAGACCATG------------------------------------------------------------------ -------------------------------------------------------------------------------- -----------------------------------GCCCCCAAGTGGAGTCACCTGTTGTAACCCT-ACGTCACCAAATG GAGACCTCA-TTA----CAGTTTCCG-CTCTCCCAGAAACAGAATCTTAACCCAGTGGGTCAGGAACCGCCTGACCAGCA C----TGGT-----CAGCTGCCTGGTAGAC------------------TCCTGCCACCCGTCCCCTACAGGAAAGTGACC CTGTAATAACCCACC----CACTCTGTCCAGCACCACGTCCTTGTCCCTGCTCCCTTCTGAGGATGAAAGTCCTTCATCC -GTCCAGCTCCTCGAGGCTCCTCTCCATCTGC-AGATGGGACACTGGCCGATTCATGAGC--GCTGAACAAAGCCAGTAA GATCTCTAACAC-----TTACTCAGTTGGA-------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------TTTTAT TTTTT-AACA---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- 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-------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------ACAC---CATGAACAGAAATAGACGTTCCTAAATAC--GTGATTCTATCT---AACATCGGTACG-- -CCAAAATA >Equus_caballus GGAACAGGCAGGGAGC----------------TGGATC--------------TGGCCTGGGGG-------CCGTAGTCTG CCAAGCCCTGCGCT---GCAC---TGTTAAAAAC---------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AAGACAACA------------------------------------------------------------------ -------------------------------------------------------------------------------- -----------------------------------GAACCAAAATGGAGTCGCTTATGCTAA-CCCCACGTCACCAAACT GAGCCTTAG-TAT----CAGCTTCAG-TACTCGCAGAAATGGAATCTTAAACCAGTCAGTCAGGAGTCACCTGGTCAGTA C----GAGTGAGGTCACC-GCCTGACTG--------------------ACTGACTGGC----CCCCAAAGGAAAGTGACC T-GCAATCACCAATCTGC-TTTTTTCCCTAGTATAACTTCCTTGTTCCTGCTCCTTTCTGCCT--AAAAGTCTTTCATTT TGTACAGCTCCTTGGAGCTCCTTTCTGTCTGCTAGATTGGATACTGTCCAATTCATGAATC-ACTGAATAAAGCCAAGAA GATCTTTAAAAC-----TTACTCGGTTGAA-------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------TTTTGT TTTAT-AACA---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- 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-------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------ACAT---CACGAAGAGAAATAGCTATTCCTAA------ATGATTCT-------ATCATCAGTGAG-- -CCAAAATA >Ceratotherium_simum AGAACAGCCTGGGAGC----------------TGGGTC--------------TGGCCCGCAGG-------CCATAGTTTG CCAACCCCTGCTCT---ACAC---TGTTAAAAAC---------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AAGACAACA------------------------------------------------------------------ -------------------------------------------------------------------------------- -----------------------------------GGCCCAAAGAGGAGTCGCCTATGCTAAGCCTCACGTCACCAAAGT GGGACTTAA-TTA----CAGTTTTGG-CTCTCCCAGAAACGGAATCTTAAACCAGTCAGGCAGAAATCGCCTGGTCAGCA C----CAGTGAAGCCATCTGCCTGGTAGAC--------------------CTGCCATC----CCCTAAGGGACAGTGCCA C-------ACCAACC----C--------TAGCGGAACTTCCTTGTTCCTGCTCCCATCT--------------TTCATTT -TGTAAGCTCCTCGGACCTCCTTTCTACCTGCTAGATTGGACGCTGTCCAATTCATGAACT-GCTGAATAAAGCCAGTAA GATCTTTAAAAT-----TTACCCAGTT----------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------------TTGT TTTTT-AACA---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- 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-------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------ACAC---CATGAAGAGAAATAGCTATTCCTAAATAC--ATGATTCTATCT---ATCATCAGTGCA-- -CCAAAATA >Myotis_myotis AG--CAGGCTGGGAGC----------------CGGGTT--------------TGGCCTGTAGG-------CTGTAGTTTG TCAACCCA-GCGCT---GCAC---TGT--AAAACGGGTGGGGAACCTTTTTTCTGCCAAGAGCCACTGGATATTTATAAC ATCATTTGAGGGCCAAAAATTATCAACTTAAAAATTAACCCGCTGTATTTGGTCAAACACTTAATTAACTCACCCCTGAT GCCTTGGCAGGGCCAGACCACATGATTTCTCGGTCCTTATACAGCCCTCCGGCCAGCTGTTCCCCGCCCTGCTGTAACAC ACACAAAGACAACA------------------------------------------------------------------ -------------------------------------------------------------------------------- -----------------------------------GGCCCTACATGGAGTCACTCGTGCTAAGCCCCAGGTCATCACACT GAGACTTA---------CAGTTTCAGCCTCGCCCAGAAGTGGACTCTTAAACCGGTCCATCAGGAGTCCCCTGACCAGCA C----CAGCGAGGACATCTGCCTGGTGGGT------------------CCCTGC-AT-----CCCTGAAGGAAAGTGACC TTGTCACAGTCAGCC----CATTTTTGCCAGAATGACGTCC---TCTCCGCTCCCTTCTGCCC------GTCTCTCCTCT TGCACAGCTCCCTGGAGTTCCTTTCTGCCCACT--ACGAGGTGCTGACTGATTCAGGAGTC-ACTGAATAAAACCAGTAA GATCTGTAAAATAAATATCACTCACTCGAA-------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------TCTGGT TTTTT-AACA---------------------------------------------------------------------- -------------------------------------------------------------------------------- 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-------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------AAAC---CATGGAGAGAAACAGATATTGTTAAATAA--ATGATTCTATCCATCATCATCAGTGCA-- -TC-AAATG >Rousettus_aegyptiacus AAAACAGGCTAGAAGC----------------CGTGTT--------------TGGTCTGCAGA-------CCACAGTTTG CCAACCCCTGCTCT---ATAC---TGTTAAAAAC---------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AAGACAACA------------------------------------------------------------------ -------------------------------------------------------------------------------- -----------------------------------GGCCCAAAATGGAGTCACTTATGCTAAGCCCCACATCACCAAATT GAAATATAACTTAATTACAGCCTCAGCTCCTCCCAGAAATGGAACCTTAAACCAGTTAATCAGGAATCACCTGACCAGCA C-----TGGGAAGGCAACTGCCTGGTGGAC-------------------CCTGCCATC----CCCTAAAGGAACGTGACC TTGCCACAACCAGCC----CACTT--GCTAGTATAACATCCTTGTTTCTGCTCCCTTCTGCCT--AGAAGTCCTTCATTT TGCAGAGCTCCTTGAAGCTCCGT-CTATCTATTAGACGGGTCGCTGCCCAATTCATGAATT-GTTTAATAAAGCCAGTAG GATCTTTAAAAT-----TTACTCAGTTGAA-------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------TTTTAT TTTT--AACA---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- 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-------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------ACAC---CATGAAGAGA---AGATATTCTGAAATAC--ATGATTTT-------ATC--CAATGCA-- -ACAAAATA >Condylura_cristata AAAATCAGCTGGGGAC----------------CAGATT--------------AGAACCATGGA-------CGAGAGTTTG CTAACCCCTGCTCT---GTAT----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- 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--------------------CA---GAGAAAAATGATACTCTTAA------ATGATTCT-------ACCATCAGTGCA-- -CCAAAATG >Sorex_araneus AAACCAGAGAGAGGGT----------------CGAATCACCCCAGGGTGGGATAGCCAACATGGGCGGCCCTGGCATGTG CCAAGCCCTGCTCT---GCAC----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- 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-------------------------------------------------------------------------------- --------------------AGTTAAGGGAAATGGGTATCAGGAAGAAATGATGATTCT-------GTCACCAATGCA-- -CCAAGATA >Homo_sapiens CAAACAGGT---GAAC----------------TGGATT--------------TGGTCCATGGG-------CCAC--TTTG CCAACCTCTACTGT---A-AC----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- 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-------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------CACAAAGAGTAACAGATATTCCTAAATCA--ATTACTGT-------ATCATCAGTGCA-- -CCAGAATG Dog34_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------GTTAATTAGCTTGATTGTGGT-AATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAA ATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------- >Canis_familiaris ATCAAAAC---CACAAATTTTAAAACATG--ACAATGT-----CC-AATTTCGCAAATTTC---AAAAACTCTCAGCTGA ATCT----------------CTTGTGGT-AATCATTTCACAGCATATGTAAAT--CAA----TCATGCTGTATACGTTCA ACTTATACA-TTAATGTATGTTAATTATTTCTTACTAAAACTGA---------AAAAAA-----CTCAACAG-TTC---- ---TTGTCTAAGTGTAGGC---TTTGACATTCCAATACGACACAGTATATGGT-TCTTACAGACAACTAA------TTCC TACCTTTCCTCTCAACCCAATATTCACATTCC--------CTTCCTTAACTTAAAAAAAAAAACAAAAC--AAACAAAAA AAACTGTATGCTTCTTTCATACAGAATGTTTCTCTCCTCATCCATTCCATAGGATCGTCACCTTCCAGAAAGCCTTCGCT TCCTTTCCTTTCTTTAAAATTTTATTCATTTGATTTGGGGGGGGGGGGGGGAGCACAGGCAGGCAGGCAGGCAGGGGGAG AGGGAGCAGCAGACTCCCTGCTCAGGGAGCCTGACATGGAGAGTTCATCAGTCCCAGGACTCTGGGATGACCTGCCTTCG GGCTGAGCCATTCAGGTGCCCCAAGCCTTCACTTTCTTGCTTTACTCATCAAACATACATAATCACTAGA---------- ----GTAGGTAAAATGCC-TCTTCTGTGAAC >Felis_catus ATCAAAATAAACACAAGTTTTAAAACATGAAAACATGAAAATGTCCAATTTCTCAAACTTC---AAAAAATTTGGGCTAA ACCT----------------AGTGTGATAAATCATTTCACAGTATATGTAAAT--CAAACCATCATGCTATACACTTCAA ACTCATACC-TTAATGTATGTCAATTTTTTCT------------------------------------------------ ----------------------------------------------------T-TCTTACAGACA----A------CTAC TCCATTTCTCTTCAATCTACTATTCACATCCCTTCCTTAACTTTTTTTTTTTTAA------------------------- ---TTATGCGCTTCCTTCATACAGAATGTTTCCCTCCCCATCCATCCCACAGGATCATCACATTCCACAAAACCTTTGCT TTCTT--------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------GCTCCATTCACCAACCATACACAATCATTAGA---------- --GAGTAGGTAAAATGCA-TCTTCTCTGAAC >Sus_scrofa ATGAAAATCA--ACAAGTTCTAAAACATA-AAAAATGT-----TCAAATTTCTCAAACTTT---AAAAATTCTCCACTGA ATCT---------------AATTGTAGC-AATCATATC-AGTTATGTGTAAAT--CAAGCCATTATGCTGTACCTCTAAA ACTTAAACA-GTGCTGTGTGTACATTAGTTCTCAATAAAACCAGAAAAAA---AGCCCAC----CTCAATGG-CACCT-- -CTTTTTCAAAATACAGGCTTGTTTGACACTCCCATTCCACATTTTAGATGGC-TTTTACAGACAATT-A------CTCC CACATTTCATTTAAATCTACTATTCACTTTCC--------CTTCCTTGCCTTTAAAAAA--ACCCCAA---AAAAACAAA AACCTATGTGCTTCCTTTATACAGAATGCTTCTTCCTACAACCATTCCATAGGATCATC-CATTCCAGAAGGACTTCACT TGCTT--------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------GCTCCAGTCATTAATCATACACAGTCATTGCA---------- --GACTAGGTAAAATGTC-TCTTTTGTAAAC >Bos_taurus CTCA-------CACAAGTTCTAAAACATG-AAAAATGT-----TAAAATTTCTGAAACTTT---AAAAATTTTCAGTTGA ACCT----------------A---TGGG-AATCATTTC--ATAATACATAAAT--AAAACCGTTATGCTGCACAACTTAA AATTACACA-GTGATATATGTAAGTTATTTCTTAATAAAAGCAGAAAAA----AAAAAT-----CTCGATGG-CTCCT-- -CTTTACCTAACTACAGG----TTTGACACTCCCATTTCACATTTTAGATGGT-TCTTATAATTAGTT-----------C TACCTTTCTTTTCAATCTAGTATTCAGCTTCC--------TTTCTCTGCCTTTAAAAACAAAATCAAACAAACAAAAAAC AATGGATGTGTTTCCTTTGTATAGAATGTTTCTCCCCACATTCATTCCACAGGATCATC-TATTCCAGAAAAACTTTGCT TTCTT--------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------GCTACACTCATCAATTATACACAGTCATTACA---------- --GACTAGGTAAAATGTT-TCTTCTGCAAAC >Myotis_myotis ATCAAATTAAACACATATTTTAAAGCATGAAAAAATGA-----TCGAAATTCTCAAACTTT---CAA--TTCTTAGCTGA ACCT----------------ATTGC------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------TGTTTCTCCCCACATCCATCCCACAGAATCATC---TTTCTCAAAGCCTTTGCT TTCTT--------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------G------------ATCAGTCTTAGTCATTAGA--------GA GTAGATAAATAAAATGCC-TCTTCTGTAAAC >Rousettus_aegyptiacus ATCAAAACAAACACAAGTTTTAAAACTTT-GAAATTGT-----TCAAATTTCTCAAACATT---AAA--TTCTCAGCTGA ACCT----------------ACTGTGGT-AATCATGTCACAAGACATGTAAAT--CAAACCATTACGCTGTATGCCTTAA ACTTATACA-GTGATGTATGTCAAGTTTCTC------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------AATAAAATGGC-ACTTCTGTGAAC >Equus_caballus ATCAAAATAAACACAAGTTTCAAAATGTG-AAAAATGT-----CCAAATTTCTCAAACTTT------------------- -------------------------------------------------------------------------------- -----------------------------------------------------AAAAATT----CTCA-CTGTCTCCT-- -TTTTGCATAAGTACGAGCTCATTTGACACTCTCATACCACACTTTATATGGT-TCTTACAGACAACT-A------CTCC TACCTTTTCCTTCAATCTACCATTGAACTTCC--------CTTCTTTGCCTTAAAAGAA-------AA---AAACAAAAA AACCTACGAGCTTCTTTTATATAGAATGTTTCTCTCCGAATCCATCCCACAGGATCATC-TCTTCTAGAAAGACTTCACT TTGTT--------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------GTGCCACTCATCAATCATACACTGTCATTAGA---------- ---------------GCC-TCTTCTGTGAAC >Ceratotherium_simum ATCAAAATAAACACAAGTTTTAAAATGTG-AAAAATGT-----TTAAATTTCTCAAACTTT------------------- -------------------------------------------------------------------------------- -----------------------------------------------------AAAAACT----GTCAACGG-TTCCT-- -TTTTGTCTAAGTACAAGCTCATTTGACACTCCCATACCACACTTTATATGGT-TCTTACAGACAACT-A------TTCC TACCTTTCCCTTCAATCTACTATTCACCTTCT--------CTTCCTTGCCTTTAAAAAA-------AA-------AAAAG AACCTATGTGCTTCCTT-------AATGTTTCTTCCCCAATTCATCCCACAGGATAATC-CCTTTTAGAAGGCCTTCACT TTCTT--------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------GCTCCACTCATCAATCATACACAGTCATTTGA---------- ---------------GAC-TCTTCCGTGAAT >Condylura_cristata ATCAAAATAAATACAAATCTTAAAACATGAAAAAAAAA-----T--------TCAACCTTA------------------- -------------------------------------------------------------------------------- -----------------------------------------------------AAAAACT----CTCAACGG-TTCCT-- -CTACTT-----GACGTTTTTCTATGACATTCCCAAGGCATACTTTACCTGGTGTTTTGAAGACAAGACAAAATTCTAAC TACCGTTCCCTGCAATTTAATATTCACCTTCC--------CTTCCCTGTCTTCTAACAA------------CCAAAACAA AACCTATGTGCTTCCAGT-CATAGACTGTTTCTTACCACATCTATCCCA----------------------GTCTTCAAT TAC----------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------CGTTCCTTAACCATAGTCATTAAA---------- --TACCAGATTAATTGCCTTCATCCACAAGA >Solenodon_paradoxus ATCAAAACAAATACAAGTTT-AAAAAATGAAAAATATT-----CAAATTATCTCAAACTTA------------------- -------------------------------------------------------------------------------- -----------------------------------------------------AAAAAAAAAAATTCAACAG-CACCT-- -CTTTGTTGAATGACAGGTTTATCTGACAATACCACA-CACATTTTATATGAT-TCTTATATACAAGT-A------CTTC TA----TCCTTTCAATCTACCATTCACCATCC--------CCTTTTCAAGTTAAAGACA-------AA-------GCAAA GAT----GTACTTCCTTTATACACAATGTTTCACCTCAGAATGATCCCAAAGGATCATC-CTTTCCAGAAAGTTCTCACT TTCTT--------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------GCTCCAATCATGGGT----CACAGTAATTAAACATCAATGCT TCGTAAAAGTCAAATGTC-ACATCTATAAAT >Cavia_porcellus ATCAAAATAGATACAATCTTTTCATTGTG-AAAATTTT-----TTTGGTTTTTCAAAATTA------------------- -------------------------------------------------------------------------------- -----------------------------------------------------AAAAA-T----CTCTA----TTTCT-- -CTTTGTTCAATGACTGGGTTACTG---ATACCTATACTATAGTTTAAACAAT-TGTTACAACTA-----------CTAC TCCTGTTTCCTTTAAAC----ATTTTCATTTC--------TTTCTTT--------------------------------- -----------TTCCTTAACACAGAACATTTCTCCT---ATCCATTCAATC---------CTTTACAGAGAACTTTTCCT TTCTT--------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------G--------ATTGCTCAAAACCACCCAATATA---------- CAGATCAGATCAAATGTC-TCTTCTGTAAAT Dog36_LINE >L1MA9_3END -------------------------------------------------------------------------------- --------------ATGAATAAGTTCTGGAGATCTAATGTACAGC--------------ATGGTGACTATAGTTAATAAT ACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTC---TCACCACACACAAAAAA----ATGGTAA CTATGTGAGGTGATGGATATGTTAATTAGCT---TGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCA CGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAAAAAAAAA------------------ --------------------------------------------------------------- >Canis_familiaris CACTTGTTTACCTTAATAAACAAACCTTCCTCCTGCTAATA--CTAACATCCTTTT---AAAACACAACCC---TGTAAA CTTGCAACTAGTAAATAAGTAAGCGCTAGAGATCT-CTTTACGAC--------------ATAGTGATTATAGTCAACAAT ACTGCATTATAAACCTCAAAGTTGCTAAGAGACTAGATCTTAATTGTTC---TCAAAA--CACAA--------ATGATAA TTATGTAACATGATAAAAGTATTAGCTAACA---CTACTATAGTAATCATATTGTAATATGGAAGTGTATCAAACCAACA CATTGCATACCTTGAATCTACACAG-TTTTATTTGTCCATTATATCTCAATTAAAAAAAA----------AATCTACAAC CC---T--AGGGTT-ACAAT----GTTGTTAATCTCTGCCTATTTGCTC-ACCCACCAAATAC >Felis_catus CATTTGTTTGTCTTAATAAACAAACCTTCCTCCTGCTAACA--CTAACATTCTCTT---AAAACTCAACTC---TATAAA CTTCCAACTAGTAGATAAACAAGTCCTAGAGATC-GATATGCAAC--------------ATAGTAATTACAATCAACAAC ACTGTATTATAAACTTCAAAGTTGCTAGGAGACTAGGTCTTAATTGTTC---TCAACAGGCACAA--------ATAATAA TTATGTGACATGATAAAAGTGTTAG-TAACA---CTACTATAGTAATAAT-----AATATGTAAGTGCATCAAACCATCA CGTGGTATATCTCAAATCTATGCGA-TGTTATATATCAATAACATCCCAATTAAAAAA------------AAAACACAAC TC---T--AGGGTTTACAAT----ATTAATGATCTCTGCCTCTTTGTTC-ACTCATCAAAAAC >Manis_pentadactyla CATTTGT----CTTAGTAAATAAACCTGCCTCATGCTAATA--CTAACTTCCTCTT---AAAACATAGCTC---TATAAA CTTACAACTAGTAGATAAGTAAATTCTGGAGATCTAATGAATAACTACTGTGTTAAAATACAGTGAT----ATCACCAAT ACTGTATTATAAATTTTGAAGTTATCATGAGACTAGATCTTAATTGTTCTATTTATTACA-ACAAAGAA----ATACTAA TTATGTAAAATAATAAAGGTGTTAGCTAACACTGCTACTGTAGTAACCATAATGCAATATATAAATGTATCAAACTAACA TTTTTTATACCTCAAACCTACACAG-TGTTATATCTCAATTACATCTCAATACCATACACACA-------CATACACATA TG---TCCAGGGTTTACAAT----GTCACCCATCTCTGCCTCTTTGCTTTG----TCAAGGAC >Sus_scrofa TATTTGCCCACCTTAATAAACAAATATTCCTTTTGCTAATA--GCAAATTCCTTTT---AACACTTAA--C---TATCAA TCTGCAACTAGTAGGTAAATAAGTTCTGGAGATCTAATGTGCAAC--------------CTAGT-ATTATAGTCAACAAT ACTGCATCATGAATTTCGAAGTTGCTAGGAAACTAGATCTTAATTGCTT---TCAGCACACACAAAAAAAACCATGATAA TTATGTGATGCAATAAAGGTGTAAGCTAGCT---CTACTGTAGTGATCATATTGAAATACATAAATGTATCAAACCAACA CTTTGTACACCCCAAACTTACACAA-TGTTATATGTCAGTT-------AATTAAAAAAAAAA--------AAAAAAAACC TC---T--AGGGTTTATAAT----GTTAACAG-CTCTGCCTC--TGTTTTGCCTATTAAAGAC >Bos_taurus TATTTGCTTGTCTTAATAAATAAATCTTCCTTTCGCTAATA--TTAATTTCTTTTT---AAAACATCA--C---TATCAA TTTGCAACTGGTAGACAGAAAAGTTCTGTAGATCTAAAGCACAAT--------------GTAGTGATTATAATCAACAAT ACTGTATAATAAAGTTCAAAG-TACTAAGAAACTAGATCTTAATTGTTT---CCAACA--CACAAAAAAAGACATGATAA TGACGTGATGTGATAAAGGTGTCATTTAGCA---CTACTGTAGTAACCATATTGCAATTTGTAAATGTACCAAAATAACA CTTTATATATCTCAAGCTTATGTAA-TGTTATATGTTGATT--------ATCAAAAAAAAAAAAAAA---ACACCCAAAC TC---T--AGAGATTAT-------GTTAACAGCCTCTGCCTCTTTATTCTGCCTCTCAAGGAC >Equus_caballus CCGTTGTTTGTCTTAATAAACAAACCTT-CTCCTACTAACA--CTAACTTCCTCTT------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------ATGGCGCAAT TC---T--AGGGTTT-CAAT----GTTAACAACCTCCACCTCTTTGCTCTGCCTACCAAAGAC >Ceratotherium_simum CATTTGTTTGCCTTAATAAACAAACCTT-CTCCTACTAATA--CTGACTTCCTCTT------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------AAGGCGTAAT TC---T--AGGGTTT-CAAT----GTTAACAACCTCTGCCTCTTTGCTCTGCCTATCAAA-AC >Myotis_myotis CATTCATTTGCCTTGAGAAACAAACCTTCCTCTTGCTAATA--CTAACTTTCTCGT------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------AAAATACAAT TC---T--AGGGTTTACAATATTAATTAACAACCTTTGCCTCTTTGCTCTACCTGTCAATGAC >Pteropus_vampyrus CATTCATTTGCCTTAATAAACAAATCTTCCTCTTGCTAAT------ACTTTCTCTT------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------AAAACACAAT TC---T--AAGGTTTATAAT----GGTAACAGCCTCTGCCT-------------AGCAAAGAC >Condylura_cristata GTTTTGTTTGTCTTTTCAAACAAACCCTTCTCTTATTAATG--CTAATGCCCTCTT------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------AAGACA---T TT---T--ACAGTTTACAAA-------ACTAACCTTTGCCTCTTTGCTCTG-CTAGTAAAGAC >Sorex_araneus CATTTGTTTGTTTAAGTAAATGAATTCTTATCTTCTTAATA--TTAATCTTATCTA------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------AACACACAAC TC---T--A---------------GTACTTAACCTATGCCTCTTTATTATATCTAGAAGATAT >Homo_sapiens CATCTGTTTGTCTTAACATGTAAACCTTCCTCTTACTGGTGTTCTAACTTCCTCTT------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------AAAACACAGC TC---T--AGGGTTTACAAT----GTT---ATCCTCTGCCT-------------ATCAAAGAC Dog40_LINE >L1_Carn7_ ----------------------------------------------------------------------TAACNTTGTA -TGGTGACAGATGGTAACTAGACTTATTGTGGTGATCACTTCACAATGTATACAAA------------------------ ------------------------------TGTCGAATCAC--TATGTTGTACACCTGAAACTAATATAACATTGTATGT CAATTATA-CTCAA--ATAAAAAAA------------------------------------------------------- ------------------------ >Canis_familiaris TTTTGTCCTATGCTTTGGGTCCTCTCCTCTCCATTTCCCTAAGATCGTGGGCTTGGT---AACT-CT--------ATGTG GTGATGG---ATGGTAAGTAGACTCAT--TGGTGATCATTTTGCAGTGTATACAAA------------------------ ------------------------------TATTGAATCAT--TATTTCACACACCCGAAACTAATATAATGTTATGCGT CAATTATATCTCAATACTAAAAAAAAAAAAAAA-------AAAACATT----AAA-ACCAAAGACAGCCTT-TGTTTCTA TTCTCTGACGTGATGTTAGCCTTA >Felis_catus TTTTTTACAATGCTTTGTGTCCCCTCTTCTCCATTTCCTTAAGGTTGTGGGCTT--T--------------------GTG GCGATGG---GAGGTAACTAGACTTACTGTGGCGATCATTTTGCGGTGTATACAAA------------------------ ------------------------------TATTGAATCAC--TGAGTTGTACACCCAAAACTACTATAATGTTATAGGT CAATTATAGCTCAATAATAAAA------------------AAAAGACT----AAA-GCCACAGAGAGCCTT-TGTTTCTG TTCTCCGGCACTGCATTAGCCTTA >Manis_pentadactyla TTTTTTACTATGCTTTGAG-----TCCCCTCCATTTCCTTAAGGTCCTGGGCTT--T---GTA-ACT--------ATGTG ATGACAG---AGGGTAACTAGACTTCCTGTTGTGATAATTTTGCAGTG-ATACATAATATCGCTGCATTAGGATATATAT TATGATATATGATACATATTCGATATATAATATCAAAGCATTCTATT--GTATACCTGAAACTAATATAATGT------- CAATTACACATCAATAATAAC-------------------AAAAAGCTT---AAA-GCCACAGGTAGCTTT-TGTTTCTC TTGTTTGGCACGACCCTCACCTTA >Sus_scrofa TTTTTTACTATACTTTGAG-----TCCTCTCCTTTTCCCTAAGGCTGTGGGCTT--T---GTA-ACT--------GTGTA -TGATAATGGATGATAACTAGACTTACCATGGTGATCATTTCTC-ATGTATGCAAA------------------------ ------------------------------TATAAAATCAG---ATGT-GTATATCTGAAACTAATATAATGCTACATAT CAATTATACCTCAATTATTTAAAAAAAAAGCAAAAAC---CAAAAGCT----AGA-GCTAAAGATAG--CT-TTTTTCTA TTCTCTAGCACCACCTTGGCTTGA >Bos_taurus TTTTTTACTATGCTTTGAG-----TCTTCTCCATTTCCCTATGACTGTGGATTT--T---ATA-ACT--------ATGTA -TGGTGA---TGGATAACTAGACTTATCATGGAGATCACTTCTCAATGTATACAAA------------------------ ------------------------------TGTCAAATCAT--CATGT-GCACAACTGAAGCAAATATAATGCTGCATGT CAATTATACCTCAACTTGGAAAAAAAAA------------AAAAAACT----AGA-GCTAAAGATAG--TT-CATTTCTG TTCTCTGGCACCCCCTTGGCCTTA >Equus_caballus GCTTTTACTATGCTTTGAG-----CCCGCTGCATTTCCCTAAGGTTGTGGGTCT--T---AAAGACT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------AAA-GCCACAGACAGCTTT-TGTTTCTA TTCCCTGGCACTCCCTTAGCCTTA >Ceratotherium_simum GTTTTTACTATGCTTTGAG-----CCCTCTCCATTTCTCTAAGGTTGTGGGTCT--T---AAAGACT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------AAA-GCCACAGATGGGTTT-TGTTTCTT TTCTCCAGCACTACCTTAGCCTTA >Myotis_myotis TTTTGTACTATTCTTTGAG-----TTCACTCCATTTAACTAAGGTTGTGTGCTT--T---AAAGTCT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------AAA-GCGACAGACAGTTTT-TGTTTCTA TCCTCTGGCACTACCTTGGCCTTG >Pteropus_vampyrus GTTTTTACTATGCTTCAAG-----TCCTCTCCATTTCACTAAGGTTGTGGTCTT--T---AAATCCT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------AAA-GCCACAGATAGCTTT-TATTTCTA TCCTCTGGCACTACCTTAGTCTTA >Condylura_cristata TGTTATGGCAT-------------TGTATCCTGTTTCCCCACCACTGTGAATTT--T---GAAGAC-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------AAACATCAC-GAAGGGCTTTCATTTCTA TGCTCTGCCACTACCTTTGCTTTG >Sorex_araneus TATTTTGCCATAGGTTGTG-----TGCTTTCCATTTCCCCATAGTTGTGTACTT--T---AAATATT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------AAA-ACCACAGATAGTTAT-TATTTCTA TTCTCCAACACTGTCTTA-CCTTA >Homo_sapiens TTTTTTTCTGTGTTTTGAG-----TTCTCCCCATCTCCCTGAGGTTGTGGGCTT--T---AAAGACA------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------AAA-GCTACAAATAGCCTTTTATTTCTA TTCTCTAGCACTATCTTAGCCCTT Dog40_LTR >MER34C_CF --------------------------------------------------------------TGAAGGGGAGCAGAATTT GCCACCCCAAAATATGCCTCTTTGGCATAAGGATTATTTTAGGCTG---------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------ATTATTTTTAAGAAACTGCAGACACAGG AGAAGCTCTGAAAACCGAGTAGAAGTTACCCTTTTGTAAGAGACATTTACATTTA--TAAGGGAAATCTCCATTTGTAAG GGTGTCTCCCTCTCT-----------------GTACCAGGAAGAGGAGGATGA-------------------CTCTAAAT CTCTAGAAACTCTTATCAATGGAGAAGGCAAGGACTTAAATCTGCATAACA-----ACCTTACCCTTGTTTACTGTGCTT TTCCTGGTAACCTCCCATAACTG--A-------------CTCCCCACCCCCAACATC-TTTTTTGTCTTTAGCTGGAGAT -GGTATTTAAGGTGATGGCTTGGGCCATTTCGGGG----AGTTACTCAGTTTTCCTGGGTC------------------- ---------TCTCCCATGTATACAGGAGGTATACATATGTTATTAAACTTTTGTTTGTTTTTCTCCTGTTAATCTGTCTT --ATGTCA--------ATTTGATTCTTAGACCAGCCAGAAGAACCTAGAAGGGTAGAGGAAA-ATTTT----TTTCTCCT CAACA----------------------------------------------------------------- >Canis_familiaris GAAATACCTAACCAGTTTATTATTGGGATTATAGCGTTTGGGTGGTCTGTAA---CATT---TGAAGGAAAGCAGAATTT GCCACCCTAAAATATTTCTTATTGGCATAAGAATTATTTTGGACTG---------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------AGTATTTTTAAGAAACAACAGATATAGG AATAGCTTTGGAAACT---TAGAAGTTACTCTTTTGTAAGAGACACTCA--------TAAGGGAAATCTCCATTTGTAAG GGTATCTCTCT---------------------TCACTAGGAAGGGAAGGAGGA-------------------CTGTACAT CTCTAGAAAATTTTATCAATAGAGAAGGTCACTACCTAAATCTGCATAACA-----ATCACACCCTAGGTTACTGTGCGT TTCCTGATAGCCTCCATTAAGTG--G----------CTCCTCCCATCTCCCAGCATC---TTTTGTCTTTAGCTGGAGAT -GATATTTAAGGTGGTGGCTCATACCACCTCAGGA----AGTTACACAGTTTTCCTGGGTA------------------- ---------TTTCCCATGTATACAGGAGGTACACA---GCTAATAAACTT--GATTGTTTTTCTCCTGTTAAT----CTT TTATTACA-------------CTGGGTATCTCAGCCA--AGAGCCTAGAAGGGTAGAGGGAA-AATTATTCTTTTCTTCC CTACA---CTAT---ATTTTTGAATCAAATAAATGTAATG-AAATGTTT----TAAAATAAGTATATTGT >Felis_catus GATATATCTAACCAGCTTATCATCAGAAATATCAAGTTTAG----TTTGTAA---CTTT---C---AGGAAGCAGAATTT GATACTGTAAAATATTTTTCTTTGGCATAAGAATTATTTTAGTCTGAGTTTTTTTAAGTTCATTTTTTTTTATTTTATTT TTGGGAGAGAGAGAGAGAGTGGCTCTGCCAGTGCAGAGCCTGATGCAGGGCTCACATTCAGGAATCATGAGATCATGACC TGAGCCAGAGTTGCATGCTTAACCAACTGAGCCACCCAGCGCACCTAGGCGAAGTATTTTTAAGAAACAACATATATAGG AATTGCTCTGCAAACTGAGTAGAAGTCTCCTTTTTGTAAGAGAC----AAATTTA--TAAGGGAAATCTCCATTTGTAAA AGTACCTTTCTCTCA-----------------GCATTAGGAAGAGAAGGATGG-------------------C------- -TCTCAAAGCTTTTATCAATAGAGAAGGTCACAACCAAAATCTGCATAACA-----ATTACACCCTTGTTTTCTGCGCTT TTCCTGATAGCCTCCCTTAAGTG--GCTCACTCTCCCTCTCACCCCCCACCCCCAACATCTTTTGTCCTTAGCTGGAGAT -------------GATAGCTAAGGCCATCTCAGGA----AGTGACTCAGTTTTCCTGGGTA------------------- ---------TTTCCCATGTATACAGGAGGCATACA---GTTAATAAACTT--AGTTGTTTTTCTCCTGTTAAT----CTT TTATTACA-------------GTGGGTGTCGCAGCCA--AGAACCTAGAAGGGTAGAGGGAAAAATTATTTTTTCCTTCC CTACA---CTTT---ATTTTTGATTCAAATAAATGTAATA----TGTTT----CAAAATAAGTATATTCT >Manis_javanica GAAATATCT----CTTTTGCCATTGGTATTACACAGTTTGGGTGGTCTGTAA---TTTT---TGAAGGGGAGCAGAATTA GCCACCCTAAAATATGTCTCTTTAGTATCAGCATTATTTTAGTCTG---------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------TTTATTTTTAAGAAACAGCAGACAAAGG AAAAGCTCTGAAAACTTAGTAAAAGTTACCCTTTTGTTAGAGATACTTATATTTA--TAAGGGAAATCT--AATTGTAAA A-------------------------------GTACCAGGAAGAGAAGGATGAATATAACTCTAGATTATCTAGATAAAT CTCCAGAAACTCTTATCAATGGAGAAGGCAAAGACGTAATTCTGTATAACA-----ACCATATCCTTGTTTACTGTGCTT TTCCTGATAGCTTCCCTTACTGGCTGCACCCCTTTCCCCCCAACCATCACTGTCATCTTCTTTTGTCTTTAGTTAGAGAT -GGTATTTAAGGTGGTAACATGAGCCATCTCTAGG----AGTTACTAGGTTTTTCTGGGTG------------------- ---------TCTCCCATGTATGCAGTAGGTATACAT--GTTATTAAACTAATGG----TTGTCTCTTGTTAATCTGCCTT TTATTGCA-------------GTGGGTATCTTGGCCA--AGAACCTAGAAGAGTAGAGGGGA-AATTA-TTTTTTTTCCC CTACG---TTTT---ATTTTTGAATCAAATAAGTGTAATATAAATGGTTGGTCCCAAATAAGTATATTCT >Sus_scrofa GAAATACC-AGCCGTTTTATCCTTGGTATAATAGAGTTTAGTTGCTCTGTTA---CTTT---TGAGGGGAAGTTGAGTTT GTCACCCTAAAATATGTCACCCTGAGATAAGGATTATTTTAGGC------------------------------------ -------------------------------------------------------------------------------- --------------------------------------------------------TTTTTAAGAAATAGCAGGCCCAGG AGAAGC--TGAAAAATGTACAGAAGTTACTCCTTTTTAAGAGGTATTTATACTTCATAAAGGGAAATTTATTTTTGTAAA GGTGTCTTCCTCCAT-----------------GTACTAGGAAGCAAAAGATAA-------------------C--TAAAT CTCTATAAACTCTTATCTAAGGAGAAAGCAAAGATCTAAATCTGTATAACA-----ACCTCATCCTTATTTACTGTGTTT TTCCTGATAACCTCCT-TAACTG--G--------------------TTCCCAACATTTTATATTATCTTTAGATGGAGAT -GGTATTTAAAGAGATGGCTTGGACCATTTCAGGG--------AGTTAGTTTCCTTGGGTC------------------- ---------TTTCCTAAATATATAGAAGGAATAGAT--GCTATTAAACTTCTGT----TTCTCTCCTGTTAATCTGTCTT TTCCTACA-------------GGGCATAACTCAGACA--AGAGCAAAGAAGGGTAGAGGAA--AATTT-ATTTTTCTCCA CTGAA---CTTT---ATTT--GAATGAAATAAATGTATTATTAATGTTT----CAAAGTAAGTATATTCT >Tursiops_truncatus GAAATATCTAACCATTTTATTGCTGATATAGTAGAATTTAGTTACTCTGTAA---CTTT---TGAAGGGAAGCAGAATTT GCTACCCTAAAATATGTCTCCCGGGGATAAGGATTATTTTAGGCTG---------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------ATTTTTTTTAAGAAACAGCAGACCTAGA AAAAGCCCTGAAAAGTGAATAGAAGTTACTCTTTTGTAAGAGATATTTACATTTA--TGAGGGAAACCTTCATTTATAAG AGTGTCTTCCCCCCGCCCCCCACAAACCCCATTTACTAGGAAGAGGAAGATGA---------------------CTAAAT CTCTAGAAACTCTTATCGAAGGAGAAGGCAAGGACTTAAATCTGTATAACA-----ACCTTATCCGTATTTACCG-GCTT TGCCTGATAACCTCCCATAACTG--G----------CTTCCCACCTC--CCAACATCTTATTTTGTCTTTAGCTGGAGGT -GGTATTTAAGGAGATGGCTTGGGCCATTTTGGGG----AGTTAATAAGTTTTCCTGAGTC------------------- ---------TTTTCCATGTATACAGGAAGAATACAT--TTTATTACACTTCTGT----TTTTCTCCTGTTAGTCTGT-TT TTCTTACA-------------AGGCATGTCTCAGCCA--AGAACCTAGAAGGGTAGAGGAAA-AATTA-CTTTTCCTCCC CTAAA---CTTT---ATTTTTGAATCAAATAAATGTATTATAAATGTTT----CAAAGTAAGTAGATTCT >Equus_caballus GAAATACCTAACCATTTTATTATTGGCATTATAGAGTTTGGATGGTCTGTAA---TTTT---TGAGGAGGAGTAGAATTT GCCATCTTAAACTGTCTCTTTGTC--ATAAGGATTATTTTAGCTGA---------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------CTATTTTTAAGAAACAGCCGACATAAG AAAAGCTCTAAAAACTGAGTAGAAGTTACCCTTTTGTAAGAGACATTTACATTTA--TAGGAGAAATATCCATTTGTAAA GGTGTCTCCCTCT-------------------GTCCTGGGAAGAGAAAGATGA-------------------CTCTAAAT CTCCAGAATCTCTTATCAATGGAGAAGGCAATGACCTAAATCTGCATGAC------AACCTTCCCTTGTTTACTGTGCTT TTCCTGATAGCCTCCCATAACTG--G----------CTCCCCC----CACCAACATCTTCTTTTGTCTTTAGCTGGAGAT -GGTATTTAAGGTGGTGGCCTGGGCCATTTGGGG-----AGTTACTCAGTTTTCCTGGGTA------------------- ---------TCTCCCGTGTATACAGAAGGTATACAT--ATTATTAAACTTCTGTTTGTTTTTCTCCTTTTAATCTGTCTT TCTTTTTA------------CGGGGGAGTCTCAGCCA--AGAATCTAGAAAGGTAGAAGAAA-AGTGA-TTTTTCCCTCT CTACA---CTTT---ATTTTTTAATCAAATAAATGTAATATACATGTTT----CAAAATAAATATATTCT >Ceratotherium_simum GAAATTCTTAACCATTTTATCATTGGCATTATAGAGTTTGGGTGGTCTGTAA---CTTT---TGAAGGGGAGCAGAATTT GCCACCTTAAAATATGTCTCTTTGTCATAAGGATTATTTTAG-CTG---------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------ACTATTTTTAAGAAACAGCAGACAT--G AAAAGCTCTGAAAACCGAGTAG--GTTACCCTTTTGTAAGAGACATTTACATTTA--TAAGGGAAATCTCCACTTGCGAG CATGT--------------------------------------------------------------------------- ----------------------------------------------------------------------------GCTT TTCCTGACAGCTTTGCATAACTG--C------CCACCCCCGCCCCCCACCCAACATCTTCTTTTGTGTTTAGCTGGAGGT -GGTATTTAAGGTAGTGGCTTGGGCCATTTTGAGG--------AGTTAGTTTTCCTGGGTA------------------- ---------TCTCCCGTGTATACTGGAGGTATACAT--GTTATTAAACTTCTGTTAGTTTCTCTCCTGTTAATCTGTCTT TTATTACA-------------GGGAGAGTCTCAGCCA--AGAATCTAGAAAGGTAGAAAAGGTAGGTA-TTTTTCCTCCC CTACA---CTTT---ATTTTTGAATCAA-TAAACGTAATACACATGTTC----CAAAATAAGTATATTCT >Myotis_myotis GAAATACCTAACCTTTCTATCATCGGCATTATAGAGTTTGG-TAGTCTA--A---CTTT---TGAGGGGGAACACAACTT GCCACCCTAAAATATGTCTCTTTGGCCTAAGGATTATTTTAGACTG---------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------ATTATTTTAAAGAAACAGCAGATATAGG AAAAGCTCTGAAAACTGAGAGGACTTTAGCCTATTATGAGA----------------TGAGGGAACTCTCCATTTGTAAG GGTGTCTCCCTCTCA-----------------GTACCAGAAAGAGAAGAATGA-------------------CACTAAAT CTCTACAAACTCTTATCAGTGGAGAAGCTACTGAC-------------------------------------CCGTGCTT TTCCTGATAACCTCCCATAATTG--G----------CTTCACCACTTCCCCAATATCTTCTTTTGTCTTTAGCTAGAGAT CTGTATTTAAGGTGGTGGCTTGGGCCGACTCAGGGAATTAGTTACTTAGTTTTCCTGAG--------------------- ---------TCTTCCATGTGTAAAAGAGATATATAT--GTTATTAAACTTGTGTTTCATTTTCTCCTGTTAATCTGTCTT TTATTACAAGGGCCAGTTAGGGGGAGTGTCTCAGCCA--AGAACAGAGAAGGGTAGAGGTAA-AATTA-TTTTTCCTCCC CTACA---GTTT---ATTTTTGAATCA----GGTGTAATATAAATGTTT----CAAAATAAGTCTGTCCT >Rousettus_aegyptiacus AAAATACCTAACCATTTTATCATTGGCGTTATAGAGTT-GGGTGATCTGTAA---CTTT---TGAAGGGAAGCAGAATGT GCCACCCCAAAATATGTCGCTTTGACATAAGGATTATTTTAGGCCG---------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------ATTATTTTCAAGAAATGGCAGGCATAGG AAAAGCTCTGAAAACTGAATAGAAATTACCCTTTTGTAAGAGACACTTACCTTTA--TAAGGGAAATCTTTATTTGTAAA -GTATCTGCTTCTCT-----------------GTATCATAAAGAGAAGGATAA-------------------CTCTAATT CTCTAGAAACTC---------------------ACCTAAATCTGTATAGCATAGCGACCATACTCTTGTTTTCTGTGCTT TG--TGATAACCTCCTCTAACTG--T----------CTCCTCCACCC-------TACATCTTTAGTCTCTAGCTGGAGAC -AGTATCTAAGGTAATGGTTTGGGCCATCTCTGGG----AGTTACTCAGTTTTTCTGGGTCTCCCATATAAATTACCCAG TTTTCAGGGTCTTCCATCTATATAGGAAGTATATAT--GTTATTAAGTTTTTAT--GTTTTTCTCCTGTTATTCTGTCTT CTATTATG----------GGGGGTGGGGGTTCAGCCA--AGAACAGAGAAGTGTAGAGGGGA-AATTA-TTTTTCTTCCC CTACA---ATTC---ATTTTTGAATCAAATAAATGTAATGTGAATGTTT----CGAAATAAGTTATTTAT >Condylura_cristata GAAATGCCTGA-------------------------TTTGGGTGCCT----A---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------ATTT---ATTCTTGAATCAAATAAATGTAATAGGAATACTT----AAAAATAAATATATCCC >Sorex_araneus AAAGCATCTATTCATTTTG-CATCAGTGTTATATAGTTGGAGCAATATGGGA---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------TTTC---ATTTTTGAGTGACATAAATGCAAAATAAAAGTTT----CAAAATAA--------- >Galeopterus_variegatus GAAATACCTAACCATTTTGTCATTGGCATTATATAGTCTGCATGGTCTGTAG---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------TTTT---A------AATCAAATAAAGGTAATATAAATGTTC----C-AAATAAATATAGTCT Dog43_LINE >L1_CARN7_3END ------------------------------------------------------------------------TGGTAACT AGACTT-ATTGTGGTGATCACTTCACA----ATGTATACAAATGTCGAATCACTATGTTGTACACCTGAAACTAATATAA CATTGTATGTCAATTATACTCAAATAAAAAAA------------------------------------------------ ------------------------ >Canis_familiaris AATTATTACATATTTTAATGAAGATAAATGTGAGAACTGCAAAGCTTATT---AAAGCATTATAGTTCT----------- -GACTTAACTATGGTGATCATTTTGCT----GTGTATACAAATATTAAATCCCTCTGCTGTACACCTGAAAATAATATAA TGTTGTATGTCAGTTGTACCTCAATTAAAAT----AAAGTGTTACAGTTCT---TTCTTAATAAAG-------------- ---------------AAGCTTTTA >Felis_catus AATTATTACATACTTTAATGAAGATAAATGCGAGAACTACAAAGTGTATT---GAAGCATTGTAGTTCT----------- -GACTT-ATTATGGTGATCATTTTGCA----GTGTTCACAAATATTAAATCACGATATTGCACACCTGAAAATAATATAA TATTATACGTCACTTATACCTCAATTAAAAT----AAAGCATTACAGTTCT---TCCTCAATA-ATCCAAAATTGTTTAA TTATA-----AAGGGAAGCTTTTA >Manis_pentadactyla AATTATTACAAAGCTTAATGAAGATAAACCTGGGAACTACAAAGGGTATT---AAAGCATTATAGTTCT----------- -GACTT-ACTGTGGTGGCCATTTCACA----GTATATACAAACATCAAACCATTACATTATATA-CTGAAACTCACATAA TATTTTATGTCAATTATACCTGAATTTTTAA----AAAGCATTGTAATTCT---CCCTCAATAAATCCAAAATTGTTTAA TTATAAAAGAAA-TAAAGCTTTTC >Sus_scrofa AATTATTATAGGCTTTAGTGAAGATCCATCTGAGAACTGAAAAGTGTATT---AAAGCAATATAGTTCT----------- -GACTT-ATTGTGGTGATCATTTCACACACTATATGTACAAATACAGAATCATTATGTGATATACCTAAAACAAATATAA TGTTATGTGGCAATTATACCTCAATTTTAAA----AAAGCATTATAGTTCT---TCCTTCATAAATCCAAAGTTGTTTAA TTATAAAAGAAAGGGAAGCTTTTA >Bos_taurus AATTCCTACAGATCTTAAGGAAGATAAATCTGAGAACTGCAAAGTGTATT---AAAGCATTATAGTTCT----------- -GGC---ACTGTCATGATCATTTCTCA----GTGCATACAAATATAGAACCATTATGTGGTACACCTGAAAATAATACAA TGTTATATGGAAATTATACCTCAATTTTTAA----AAAGCTTTAGAGTTCT---TCCTTCATAAATCCAAAATCATTTAA TTATAAAAGCAAAGGAAGCTTTTA >Equus_caballus AATTATTACAGGCTTTAAAGGAGATAAATCTGAGAACTGCAAAGTGTATT---AAAGCATTATAGTTCT----------- -------------------------------------------------------------------------------- ------------------------------------------------------TCCTTCATAAATCCAACATTGTTTAA TTATAGAAGAAAGGGAATCTTTTA >Ceratotherium_simum AATTATTATAGACTCTAATGAAAATAAATCTGAGAAC-------TGTATT---AAAGCATTATAGTTCT----------- -------------------------------------------------------------------------------- ------------------------------------------------------TCCATAATAAATCCAAAATTGTTTAA TTACAAAAGAAA-GGAAGTTTTTA >Myotis_myotis AATTTTTATGGACTTTAATGAAGATAAATCTGAGAACTCTAAAGTGCATT---GATGCATTATAGTTCT----------- -------------------------------------------------------------------------------- ------------------------------------------------------TCCTTAATAAATCCAAAATTGTTTCA TTTTAAAAGAAAGGGAAGCTTTTA >Rousettus_aegyptiacus AGTTATTACAGATGTTAATAAAGATAAATCTGAGAACTGTAAAGTTTATT---AAAGTATTATAGTTCT----------- -------------------------------------------------------------------------------- ------------------------------------------------------TCCTTAATAAATCCAAAATTGTTTAA TTATA-AAGAAAGGGAAGCTTTTA >Condylura_cristata CATTATTGCAGACTTTAATGAAGATAAATCTGAAAGTTGTAAAGTATATC---AAAGCATTATAGCTCT----------- -------------------------------------------------------------------------------- ------------------------------------------------------TCCTTAACAAATCAGAAA----CTAA TTATAAAAGAAAGGGAAGCTTTAA >Sorex_araneus CTTTATTACCGGTTTTAATGAAGATAAATCTGAGACTCGCAAAATACATT---GAAGCATTATAGTTCT----------- -------------------------------------------------------------------------------- ------------------------------------------------------TTC----CAAATATGAAATTGTTTAA TTATAAAAGAAAGGGAAGCTTTTA >Homo_sapiens AATTATTACAGGCTTCAGTGAAGATAAATCAGAGAACTGCAAAGTGTATT---AAACCATTATGGTTCT----------- -------------------------------------------------------------------------------- ------------------------------------------------------TCCTTAACACGTCTGAAATTATTTAA TTATAAAAGAAAGGGAAGCTATAA Dog45_LTR >ERV54-EC_LTR --------------------------------------------------------------TGTTAAAAACAAGACAAC AGGCCCAAAATGGAGTCACTTATGCTAAGCCCCACGTCACCAAACCGAGACTTAACTTAATTACAGTTTCGGCTCTCCCA GAAATGGAATCTTAAACCAGTCAATCAGGAATCACCTGATCAGCACTAGTTAGGTAATCTGCCTGAT-AGACCCCTGCCA TCCCCTAAAGGAAAGTAACCTTGCAATAACCAATCCAC-----------TTTTTTGCCTAGTATAACTTCCTTGTTCCTG CTCCCTTCTG--------------CCTATAAAAGTCTTTCATTTTGTA-CAGCTCCTCGGAGCTCCTTTCTATCTGCTAG ATTGGATGCTGCCCAATTC--ATGAATCATTGAATAAAG---CCAATAAGATCTTTAAAATTTACTCAGTTGAATTTTGT TTTTTA-------ACA------------------------------------------------------------- >Canis_familiaris TTGCAAAGCGAAATTT-ATTTTCACTTTCTCACTTCTTT-GACTACAATGTT---GCAT---TGTTAAAAGAAAAATGAC AGGCCCAAAATTGAATTACTTATGCTAAGCTCCACATCACTAAATCAAA-----ACATAATTATAGCTTAGTCTCTCCCA GAAATGTAATCTTAAACCAGTTAGTCAGGAATAGCCAGATCAGCACTTGTTAAATAACTTACCTGGT-GGACCCCTGCTA TGCCCAAAAAG-GAGTAACTTTGCAATAACCGACCCAC-----------TTTTTTGTATAGTATAATTCCTTTGTTCCTG CTCCCTTCTG--------------CCTATAAAAGTATTTCATTTTGTA-CATCTTCTCAGGGTTCCTTTATTCCTGCTAG ACTGGATGCTACCCAGTTCAAATAAATTTTTGCTCAAAG---GTCTTAAAATTTTTAATATGT-CTCAG------CTTAT -TTTTA-------ACA---GCAT---ATACCTCTAGAGAAACTTAACTTATTTATTTTATTCCCACCTTC-ATAGAA >Felis_catus GTGCAAAGCCGAATTT-ATTTTCACTTTCTCA----TCT-GACTCCAATCTT---GCAT---TGTTAAAAACAAGACAAA ATGCCCAAAATGTAGTCACTTATGCTAGGCACCCTCTCACTAAACTGAG-----AGATAATTATAGCTTAGTCTCTACCA GAAGTTGAATCTTTAACCAGTCAATCAGGAATAGCCAGAACAGCACTACTTAGGTAATCTACCTAAT-AAATTCCTGATA TTGCCTAAAGG------------CAATCACCAACCCAC-----------ATTTTTGCCTAGTATAGCTTCCTTGTTCCTG CTTCCTTCTT--------------TTTACAAAAGTATTTC---TTGTA-CATCTGCTTAGAGCTCTTTTCTACTTGCTAA GCTAGATGCTGCCCAATTCAAATACATTTTTGCTCAAAG---CACGTAAAATTTTCAATATGT-CTTAA------TTTAC CTTTTA-------ACA---ATAT---ATACCTCTATAGCTCCTCAACATATTTATTTTATTCCCACCTTC-TTATAA >Manis_pentadactyla CTGCAAATCCAAATTT-ATTTTCACTTTCTCATTTCTCT-GACTACAATATT---GTGC---TGTTAAAAACAAGACAGA AGGCCCAAGATAGAGTCACTTAAGCTAATCTCCACATCACCAAACTGAGACTTAACTTAATTACAGTTTAGATTCCCCCA GAAACGAGATCTTAAACCAGTCAATCAGTAATAGCCAGATCAGCACTAGTTAGGTAATCTACCTGATAAGACTCCTTCCA TTCCCTAAAGGAGAGTAATTTTGCAATAACCGAACTAC-----------TTTTTTGCCTACTATAGCATCCTGGTTCCTG CTCCCTTCCT--------------CCT------GTCTTTCATTTTGTA-CAGGTCCTTGGAGCTCCTTTCCATCTGGTAG ATTGAATGCTGCCTGATTTGAACTGATTTTTGTTCAAATAAACTCTTAAAAACTTTAATATGC-CTCAG------TTCAT CTTATA-------ACA---GTAT---ATGCCTCTAGAGCACCTAAACACATTTATTTTTTTTACATCCTCTTTATGG >Sus_scrofa TGGAAAAATCAAATTT-ATTTTCACTTTCTCACTTCCCT-GAGTACAATGTT---GTGC---TG-AAGAAAGAAGACAAC AGGCCCCAAACAGAGCCACTTATGCTAAACCCCATGTCACAAAATCAAG-----ACTTAATTACAGTTTTGGCTCTCCCC AAAATGGAATCTTAAA-CAATGAATCAGGAATCATTTGATTAGCAAAAGTTAGGTATTCTTCTGAAT-AGGCCCTGGCCA TCCTTGAAAGAAAAGTATCTTTGCAATAACAAACCTTC-----------TTGTTTTCCTAGTAAAATTTCCTTGTTCCAG TTCCAATCTG--------------------------------TTTGTA-TGATTCTTCAGAGCTCCTTTCAATCTGCTAT ATTTGATGCTGCCCAATTCAAATCAATTGTTGC-CAAATAAACGCTTAAAATTTTTAATATGA-TTCAG------TTGAT CTTTTA-------ATA---ACAT---ATACCTCTAGAGCTCCTCAACATATTTATTTTATTTCCATTTTC-TTATAG >Bos_taurus CTGAAAAATCAAATTT-ATTTTCGCTTTCTCAGTTCTCT-GACTACAATGCT---ATGT---TG-TAAAAACAAGACAAT AGCCTTGAAA--------CACATGGTAATCTCCATGCCATGAAACCAAGGCTTAACTCCATTACAGTTTAGA-TCTCCCA GAAACAGAATCTTAAAATA-TGAATCAGGAATCATCTGACCAGCACTAGCTAGGTAATCTTCTGAAT-AGACTCTGACCA TTCCTGAAAGAAATGTAACTTTGCAATAACCAATCCACTTATTTATTTATTTTTTACCTAGTAAAATTTCCTTTATTCTG CT----TCTG--------------CTTGTAAAAGTATT--GTTTTGCA--AAATCCTCAGAGTTCCTTTCAATCTTCTAT ATTTGAACATGCCCAATTCAAATCAATTTTTGCTCAAATAAACTCTTACA--TTTTAATATGA-TTTAG------TTGAT CTTTTATTAAATAACA---ACAT---ATAATTCTAGAGCACCTCAGTATATATGTTTTATTTCCACCTTC-TTATAG >Equus_caballus CTGCAAAACCAAATTT-ATTTTCACTTTCTCACTTCTCT-GACTATGACGTT---GTAT---TGTTAAAGACAAGAAAAC AAGCCCAAAATAGTGTCTCCTATACTAAGCCTCATGTCACCAAACTGAG-----ACTTAATCACAGGTTCAGCTCTCCCA GAAATGCAATCTTA----AGTCAATCAGGAATGGCCTGATCAGCACTAGCTAGGTAATCTGCCTGAT-AGACTCCTGCCA TCGCCTAAAGGAAAGTAACTTTACAATAACCAACCCAC-----------TGTTTTGCCTAGTGTAACTTCCTTATTTCTT CTCCGTTCTG--------------CCTATAAAAGTCTCTCATTTTGTA-CAGCTCCTTTGAGCTCCTTTCTTTCTACTAG GTTGGATGCTTCCTGATTCTAATCGATTTTTGCTCAAAG----TCTTAAAACTTGTAACATGC-CTCAG------TTTGT CCTTTG-------ACA---GGGT---ATACCTCTAGAG---CTTAACATACTTATTTTATTTTCATCTTC-TTATAG >Ceratotherium_simum CTGCAAAGCCAAATTT-ATTTTCACTTTCTCACTTCTCT-GACTACAACATT---GCAT---TGTTAAAAACAAGACAAC AGGCCCAAAACGGAGT--CTCACGCTAAGTCCCAAGTCACCAAACTAAG-----ACTTAATCACAGTTTTGGATCTCTCA GAAATGGAATCTTAAATCAGTCAGTCAGGAATTGTCTGATCAGCACTAGTTAGGTAATCTGCCTGAT-AGACTCCTGCCA CTCCCTAAAGGAAAGTAACTTTGCAATAACAAACCCAC-----------TTTTGTGCCTAGTATGACTTCATTATTAGTC CTCCATTCTG--------------CCTATAAAAGTCTTTCATTTTGTA-TAGCTCCTCAGAGCTCCTTTCTTTCTGGTAG GTTGGATGCTTCCCGATTCCAATCAATTTTTGCTCAAATAAACTCTTAAAATTTTTAATATGC-CTCAG-------TTGT CTTTTG-------ACA---GCAT---GTACCTCCAGAG---CTAAATATATTTATTTTATTTTCATCTTC-TTATAG >Myotis_myotis CTGCAAAACCAAATTT-ATTTTCACTCTATCACTTCTCT-GACTACAACGTT---GCAT---TGCTAATAACAAAATAAT GGACATGA-ATGGAGTCACTTATGCTAAGCCTAAAGTCACCAAACTAGG-----GTTTAATTATGGTTTCAGCTCTCCCA CCAATGGAATCTTAAGGCAGTCAATCAGGAATCACCTGATCTGCCCTAGTTAGGTTATCTGCCTAAT-AGATCCTTGATA TTCTTTAAAGGAAAGTAACTTTGCAGTAACCAATCCA------------TTTTTTGCCAAGTATAACTTCCCCATTTCTG TTTCCTTCTGTCTATAAAAGCTTTTCTATAAAAGCTTTTCATTTTGTACCAATTCCTCAGATCTTCTTTTTATCTGATAT ATTGGCTGCTGACTTTCTTGAATAGATTTAGGCTCAAACAAACTC--AAAATATTTAACGTGC-TTCAGT--GTTGTTGT TTTTTA-------ACA---GCAG---AAACTTCTGGAATTCCTCAACATATTTATTTTATTTCCATCTGC-TTATAG >Rousettus_aegyptiacus CTGCAAAACCAAATTT-ACTTTCACTTTCTCACATCTCT-TACTACAATGTT---GCAT---TGTTAAAAACAAAATAAC AGGCATAAAATGGGGTCACTTATGCTAAGCCCCACATCACCAAACTGAC-----ACCTAATTACAGTTT-GGCTCTCTCA GAAATGGAATCTGAAACCAGTCAAACAGGTCTGAGTCAAACAGCACTAGTTAGATAATCTGCTTGAC-AGACCCATGCCA TCCCCT-AAGGAAAGTAATTTTGCAATAACCAATCC-------------TCTTTTGCCAAGTATAACTTTCCTGTTCCTG CTCCCTCACG--------------TTTATAAAAGTCTTTAATTTAGTA-CAGTTCCACAGATTTCTTTGCTATGTGATAG ATCAGCTGCTATTCAATTTGAATTGACTTTTGCTCAAATAAACTC--AAGATATTTAACATGT-CTCAG------TTTAC TTTTTA-------ACA---GCAT---ATATCTCTAGAGTTTCTCAACATA-----TTTATTTCCGTCTTC-TTATAG >Condylura_cristata TTGGAAAACCAAGTTTCATTTATACCTTTTCAATTCTTT-TACTGCAATA-T---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------GTAT---ATAACTCTAGAACTTCTCAAAGAA-----TCTCTTTCCATCCTC-TTAAAG >Uropsilus_gracilis CTGGAAGTTCAAATTTTATT--GATTTATTCACTTTTTTTTACTACAATG-T---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------GTGT---ATTTTTCTAGAACTCCTCAAATGA-----TCTATTTCCATCTTC--TATAG >Homo_sapiens CTGCAAAACCAAATTT-ATTTTCACTTTCTCACCTTTCT-GACTGAAATGTT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------GCAT---ATAGCGCTAGAGCTTCTTAACATACTTATTTTATTTCCATCTTC-CTACAA Dog46_LINE >L1_CARN7_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------ATAAATAAG------------------------------- -TCATGGGGATGTAATGTACAGCATGGNGAATATAGTCAATA-----ATATTGTANTAACNTTGTATGGTGACAGATGGT AACTAGACTTATTGTGGTGATCACTTCACAATGTATACAAATGTCGAATCACTATGTTGTACACCTGAAACTAATATAAC ATTGTATGTCAATTATACTCAAATAAAAAAA------------------------------------------------- ---------------------------------- >Canis_familiaris CCTTGACATCCTTAAGA-TCTTAGCTTTCTACAG-TGCTATTTTCCTTATTA---TT--AACAAATG-GCTT---GGGAT GCATGAGTGGCTCAGCAGTTGAGCTTCTGCCTTCCACCCAGGGCATGATCCTGGAGTCCCAGGATCGAGTCCCACATCGG GCTCCTGGCAAGGAGCCTGCTTCTCTCTCTGCCTAGGTCTCTGCCTCTCTCTCTCTCTTTCTGTGTCTGTCTCTCATGAA TAAATAAATAAAATCTTAAAAAAAACACACCCCAAATGGCTTTAAAAATAGCTTCATATTAAACA-TGGCTTGTGCCATT TTTAAGATGATTGAA-GTAGGTCTTAGAAGTTTTCATCACTAGAAAGAAGTTTC-GTAATGATACAAGGTGATGGGTGTT AACTAGACTTACT---GTGATCACTTCACAATATACACCAACATCGAATCATTATGTTGAACACCTGAAACTAATAT--- -------GTCAATTATATCTAAATTT--------TT------TTTAAATGGCTT---ATTACAATTTCAAGGGGCTCCCT CAGGCCAGAGATGGGACCATCTGAGCACTAGTAA >Felis_catus CCTTGACATCCTCAAGA-TTCTAGATTTCCCCAGATGCCCTTTCCCTTATTA---TT--AACAAATG-GTTT-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------TAAAAATTGCTTCTTATTAAAAAGTGGCTTGTGACA-- -TTAAGATTATTTAA-GTAGATCTTAAAAGTTTTCATCACTAGAAAAAAAATT--GTAAAGATGCTAGGTGATTGATGTT AACTAGACTTACT---GTGATCACTTCACAATATATACCAACATCGAATCATTTTGTTGGACACCTGAAACTAATATAA- ----TATATGAAGTATATCTAAAGTT--------TT------TAAAAATGGCTT---G-TGCGATTTCAAGAGCTTCCGT CAGGCCAGAGATGGGACAACTTGAGTGCTAATAA >Manis_pentadactyla NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATTGCCCTTTAAATGCATA---TT--AAAAAATG-GCAT-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------AATAAATGGCTCCATATTT------------------- -TTAAGATCATTTAA-GTAAACCTTAAAAGTTTTCATCATTAGAAAAAAAATTGTGCAATAATGTAGGGTGACGGATGTT A-----ACTTACTGTAGTGATCATTTCACAATATACACAAATATTGAATC---ATGTTGCATACCTGAAATTAATATAAT GTTAC---------ATATCTAAA-----------TT------------TGGCTT---G-TGCAATTTGAAGAGGCTCCCT TGGGCTAGCAGTGGGACAATTTATGCACTAATAA >Sus_scrofa CCTTGATAGCCTTGAGA-TTTTAGCTTTCCACAGCTACCCTTTGTCTTCGCA---TTTTAAAAAATG-GCT--------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------TATTGGCATCGTATTAAAAA-TGGCTTGTGCCATG -TTAAGAGCATTTAA-GTAGATCTTAAAAGTTTACATCACTA---AAAAATTT--GTAGCAATGAAAGGTGATGGATGTT AACTAGACTGATTGTGGTGATCATTTCACAGTATATACAAACACGGAGTCTTTATGTCGTCCACCTGAAACGAACATAAA GTTATATGTTGATTATATCTAAATTT--------TT------AAAAAATGGCTT---G-TGCCATTTCAAGAGGCTCCCT TGGGCCAGAGATGGGACCATCTGAGCACTAATAA >Tursiops_truncatus CCTTGATATCCTTGAGA-TTCTAGCTTTCTACAGCTACCCTTTTTCTTCATA---TT--AAAAAGCAAGGGT-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------TAAAAATGGCTTCATACTAAAAA-TGCCTTGTGACGTT TTAAAAATCATTTAA-GTAGATCTTAAAATTTTTCATCACTAGAAAAAAATTT--GTAACAATGTATGGGGACAGATGTT AACTAGACTTA-TGCTGTGACCATTCTGCAATGCATACAAATACCGAGTCGTTACATTGTAAACCTGAAAATAATATAAT GTTACATGTAAATTATATCTAAATTT--------TT-------AAGAATGGCTT---G-TGCAATTTTAAGAGGTTCACT TGGACCAGAGATGGGACAATCTGAGCACTAATAA >Equus_caballus TCTTGATATCCTCAAGACTTCTAGCATTCTACAGTTACCCTTTCTCTTCATA---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------TT------AAAACATGGCTT---G-TGCAACTTTAAGAGGCTCTCC TGGGCCAGAGATGGGACAACATGAGCACTAACAA >Ceratotherium_simum TCTTGATATCCACAAGACTTCTAGCTTCCTGCAGTTAGT---TTTCTTCAAA---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------TT-------AAAAATGGCTT---G-TGCAACTTGAAGAGGCTCTCC TGGGCCAGAGATGGGAAAATCTGAGCACTAATAA >Myotis_myotis CCTTGATATCCCTCAGT-TTCTAGCTTTATACAGTTACACTTTCTCTTCATA---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------TTTTT--AAAAAAATGGCTT---G-TGCAATTTCAAGAGGCCCCAT GGGCCCAGAGATGAGCTAATCTGAG-----ATAA >Rousettus_aegyptiacus CTTTGATATCCTTGAGT-TTCTAGGTTT--ATAGTTACCTTTTTTCTTCATA---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------TG------AAAAAATGGATT---G-TGTAATTTCAAAAGGTTTCCT TGGGCTAGAAATGGGACAATCTGAGCACTAATGA >Condylura_cristata --------------AGACTTCTAGTTTTCTCTTGCCTCTC--TTTTTTCATA---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------TT------AGAAAATGGCTT---G-AGGAATTTCAAGAGGCTTTCT TAGGTTAGTGATGGGACAATTTGAGTGCTAACAA >Solenodon_paradoxus CCTTGATAACCTCAAGACTTTTAGAGTCCTACAGTTACCCTTGTTCTTCATA---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------TT-----AAAAAAGTGTTTT---A-TGTGATTTGATAAGGCTCTCT TGAGTACTAGATGGAACAGT--------GAATAA >Homo_sapiens CCTCAATATCCTTGAGACTTCTGGGCTTTTACAGTTACCCTTTTTCTATGTA---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------TTATTAATAAAAGATGGCTT---G-TGAAACTTGAAGAGGCTCCTT TAGGCCATAGATAGGACAATCTGAGCACTATTAA Dog46_LTR >MER34C_CF -------------------------------------------------------------------------------- -------------TGAAGGGGAGCAGAATTTGCCACCCCAAAATAT-GCCTCTTTGGCA-TAAGGATTATTTTAGGCTGA TTATTTTTAAGAAACTGCAGACACAGGAGAAGCTCTGAAAACCGAGTAGAAGTTACCCTTTTGTAA-GAGACATTT---- -------------------------------------ACATTTATAAGG---GAAATCTCCATTTGTAAGGGTGTCTCCC TCTCTGTACCAGGAAGAGGAGGATGACTCTAAATCTCTAGAAACTCTTATCAA-TGGAGAAGGCAAGGACTTAAATCTGC ATAACA----ACCTTACCCTTGTTTAC---------TGTGCTTTTCCTGGTAACCTCCCATAA------CT-GACTCCCC A--CCCCCAACATCTT-TTTTGTCTTTAGCTGGAGATGGTATTTAAGGTGATGGCTTGGGCCATTTCGGGGAGTTACTCA GTTTTCCTGGGTCTCTCCCATGTATACAGGAGGTATACATATGTTATTAAACTTTTGTTTGTTTT------TCTCCTGTT AATCTGTCTTATGTCAATTTGATTCT-------TAGA--------------CCAGCCAGAAGAACCTAGAAGGGTAGAGG AAAATTT---TTTTCTCCTCAACA-------------------------------------------------------- ------------ >Canis_familiaris TAATTT---GCAAAATGTGTTTCACTGCCCACT------ATCCCTCCTCCACTC----------TCCCAAAAGT-----T TTA---AAGC---TGAAGGAGAGCAGAATTTGCCACCCCACAATAT-TATTCTTCGACA-TAAGGATCATCTTG------ --------AAGAAACAGCAGACATAG----------AACAACTATGCAGAAGTTCCCCTTTTGTAAGGGGACATTT---- -------------------------------------ATGTCTCTCAGG---GAACTCGCCATCCCTAAGGGTGTCTCCC TCTCTGTACCAGGAA---AAAGAGGTGTCTAGATCTCTAGAAACTCTTAGCAA-TGGAGAAGGAGAGGACTTAAATCTGC CTACCA----ACCATACTCCAGCTCAC---------AGTGCTTTGCCTGACAGCCACCCATGA------CT-GGCTCCCC ACGCTCCCAACATC---TTTTGTCTTTAGCCAGAGAGGGTATTTAAGGAGGTGGCTTGGGCCATTCCAGG-AGTTACTCA GCTTTCCTGGGTCTCTCCTGTGTATGTGGGGGGCAT----ATGTTAGTAAAC--TTGTTTGTTTT---TCTCCTTCTTGT TATTTATTT------ATTTTTATTACAGCAGG-GGTGGGTGGGG----GCCTCGGCT--AAGAACCTAGAAGGTTAGAGG AAAAATTATTTTTCAACCCTTACA---AAGC---CAACTGCCTTTTTTTTTT-------CAGAGAAGAAATAGGAGGCCA GAGAGGTGAAGC >Felis_catus TAATTT---GTAAAATGTGTTTCACTGCCCGCT------ATCTGTCCTCCACTC-----------CCCAAAGGG-----T TTA---AAGC---TGAAGGAGAGTTGAATTTGCCACCCCACAGTACGGGTTCTTTGGCA-TAAGGATCATCTTG------ --------AAGAAACAGCAGACACAG----------AAAACCTGCATGGAAGTTACCCTTTTGTAA-GGGACATTT---- -------------------------------------ACATTTATAAGG----AAGTCTCCATCCGTAAGGGTGGCTCCC TCTCTGTACCAGAAA------GATGTGCCTACATTTCTAGAAACTCTTACCAATTGGAGGAGGCGGGGACTTCGATCTGT GTACCA----ACCATGCTCTCGCTCAC---------TGTGCTTTGCCTGACAGCCTCCCATAC------TTGGGCTCCCT AT-CTCCCAACATC---TTTTGTCTTCAGCTGGAGATGGTATTTACAGTGGTGGCCGGGGCCATTCCAGG-AGTTCCTCA GTTCTCCTGGGTCTCTCTTGTGTATGCAGGGAGCATAC--ATGTTATTAAAC--TTCTTTGTTTTTTCCCTCCTCCTGTT CATCTGGCT--------TTTTATTATAGCTGCAGGGGGGTGGTT----GCCTCAGCC--AAGAGCTTAGAAGGTTAGAGG AAAAATTATTTTTCAACCTATACA---AAGC---CAACTCCCTTATTTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNN >Manis_pentadactyla TAATTT---GCA-AATGTG---CACTGCCCACT------ACCCCTCCCTCCCTCCCTCCCTCCTCCCCAAAGGG-----T TGC---AAGC---TGAAGGGGAGCAGAAGGGGCCACCCCAAAGTAT-GCCTCTTTGGCA-TAAGAACTGTTTCAGGCTGA TTATTTTTAAGAAACAGCAGACATGGGAGAAACTCAGAAAACCTAGTACAAGTTA-CCTTTTGTAA-GAGACATT----- ---------------------------------------AACTCCAAGG---GAAATCACCATTTGTAAGGGTGCCTTCC TGGCTGTACCAGGAAGAGAAGGA-----CTGAATCTCTAGGAACTCTAATCAG-CAGAGAAGGTAATGACCTACATCTGA ACAACAACCTACCTTACCCTTGTTTGC---------TATGTTTTTCATGACAACCTCCCGTAA------CT-GGCTCCCA A--TCCCAAACAACTTCTTTTGTCTTTAGCTGGACACTGTATTTAAGGTGATGGCTTGGGCTATTTCCGGGAGCTCCTCA GTTTTCCTGGGTCTCTTCCATGTATACAGGAGGTATAC--ATGTTATTAAAT--TGGTTTGTTTT---------CCTGTT AATCTCTCT--------TTTTATAAT--GTGGGGGGAGGAGGGA----GGCTCAGTC--AAGAGCCTAGAACGGTGGAGA GAAGATTATTTTTCCTCCCCTACA---AAGC---CAATTTCCTTAATTTTT--------CAGAGAAAAAACTGGAGCCCA GAGAGGTGAAGC >Sus_scrofa TAACTTGAGGAGGAAGGCAGATTCCTGCCAG--------ACCTCTCCCAT------------------------------ -----------------------------------CCCC-AAATAT-GCCTCTTTAGCA-CAAGTATTATCTCAAGCTGA TTATTTTTAAGAAACAGCAGATGTAGGAAAAGATCTGAAAATAGAGTAGGAGTTACCCTTTTGCAA-GAGACCCTTTAGC AAGTTAAAAATTACAAGTTAAAAGTTACCCTTTTGCAAGATTTATAAGGAAAAAAATCTCTATTTGTTAGGGTGTCTTCC TCTCACTA-CAGGAAGAGAAGGATAA--CTAAATCTTTAGAAA--CTAATCAA-AGGAGAAGAGAA--------ATCTGC AGAACA----ACTATATTCTC-TTTAC---------TGTGCTTTTCCTGATAACCTCCCTTAA------CT-GACTGC-- -----CCTCAAATT---TTTTGTCTTTAGCT-GAGATGGTATTTGAGGGGGTGATTTGGGTCATTTCAGGTAGTTGATCA ATTTTCCTGAGTATCTCCCATGAATACAGAAGGTACAC--ATATTATTAAAC--TTGTTTGTTTT-----CACTCCTGTT TATATCT----------TTTTATTAC-----------AGAGGGG----GTCTCAGCC--AAGAATGTAGAAAGGTAGAGG GAAACCTATTTTTCCTCCCCTACA---AAGC---CAATTCCTTTTTTTTTTTTTTTTGCCAGAGGAGAAGCTGTAAC--A GAGATTTGAAGC >Tursiops_truncatus TCATTT---GCAAAATGTGTTTCACTTCCCATG------ACCTCTCCCCCAC----------------AAAGGG-----T TGC---AAGC---TGAAGGGGAGCAGAATTTGCCACCCCAAAATAT-GCCTCTTTGGCT-TAAGGATTATCTTGAGCTGA TTATTTTTACAAAACAGCAGACATAGGAAAAGATCTGAAAAGTGAATAGGAGTTACCCTTTAGCAA-GAGAGCCTTTAGC AAGTTAAAAATTACAAGTTAAAAGTTACCC-TTTGCAAGATTTATAAGG---GAAACCTCCATTTGTAAGGGTGTCTCCC CCTCTCTACCAGGAAGAGAAGGATAACTCTAAATCTTTGGAAACTCTGATCAA-AGGAGAAGGAAATGACTTAAATCTGC ATAACA----CCCATACTCC-ACTTAC---------TGTGCTTTTCCTGATACCCTCCCTTAA------CT-GACTCC-- -----CCTCGCATC---TTTTGTTTTCAGAT-GAGATGGTATCTAAGGTGATGGCTTGGGTCATTTCAGGGAGGTGCTCA GTTTTCCTGGGTCTCTCCCATGAAAACAGGAGGTGCAC--ATGTTATTTAAC--TTGCTTGTTTT------TCTCCTATT TATCTTTCT--------TTTTATTAC------------AAGGCG----GTCTGAGCC--AAGAACCT-GAAGAGTAAAGG TAAAATTATTTTTCCTTCCCTTCA---AAGC---CAACTCCCTTTTTTTT---------CAGAGGAGAAACTGGAGCCCA GACAGGTGAAGC >Equus_caballus TAATCT---GCAAAAAGTCTTTCACAGCCCAGT------ACCCCTCCCCTGCCC-----------CTAAAAGGG-----T TGC---AAGC---TGAAGGAGAGCAGAATTTGTAACTCCAAAATAT-GCCTCTTTGGCA-CAAGGATTGTCTCGAGCTGA TTATTTTTAAGAAACAGCTGACATAGGAAATGCTCTGAAAAGGGAGTAAAAGCTACCCTTTTGTAA--GGACATTT---- -------------------------------------ACATTTGTAAGA---GAAATCTCCATTTGTAGGGTTGTTTTTC TCTCTGTACCAGGAAAAGAAGGATGACTGTACATCCCTAGAAACTCTTATCAT-TGCAGAAGGCCAGGACCCAAAGCTGC GTAACA----ACCTTACCCTTGTTTAC---------TATACTTTTCCTGGTCACCTCCCATAA------CT-GACTCCTC A--TCCCTAACCTC---TTTTGCCTGTAGCTGGAGATGGTATTTAAGGTAGTGGCTTGGGCCATTTCAGGGAGTTACT-- -----CCTG-GTATCTCCTATGTATACAGGAGGTATAC--ATTTTACTAAAC------TTGTTTT------TCTCTTGTT AACCTGTC---------TTTTTTTAC------AGGGGGAGGGTC----CCCTTAGCC--AAGATCCTAGGAGGGTAGAGG GAGAATTATTTTTCCTCTCTTATA---AAAG---CAACTCTCTTATTTTT---------CAGATGAGAAAATGGAGCCCA GAGAGGTGAAGC >Ceratotherium_simum TAATCT---ATAAAAAGTGTTTCACTGCCCAGT------ACCCCTCCCCTGCCC-----------CTAAAGAGG-----T TGC---AAGC---TGAAGGGGAGGAGAATTTGTTACTCCAAAATAT-GCCTCTTTGGCATTAATGATTGTCTTGACCTGA TTATTCTTAAGAAACAGCTGACATAGGAAATGCTCTGAAAACTGAGTTGAAGTGACCCTTTGGTAA--GAATATTT---- -------------------------------------ATATTTATAAAG---TAAATCTCCATTTGTAGGGGTGTCTCCC TCTCTGTACCAGGAA---GAGGATGACTCTAAATTTCTAGAAACTCTTATCAT-TGCAGAAGGCAAGGACTTAAATCTGC AAAAGA----ACCTTACCCTTGTTTAC---------TGTGCTTTTCCTAGTCACCTCCCATAA------CT-TACTCCTC A--CCCACGACATCTTCTTTTGCCTTCGGCTGGAGATGGTGTTTAAGGTGGTGACTTGGGCCATTTCAGGGAGTTGCTCA GTTTTCCTG-GTCTCTCCCATGTATACGGGAGGTATAC--ACGTTATTAAAC--TTGTTTGTTTT------TCTCCTGTT AATCTATCT--------TTTTATTAC-------GGGGGAGGGTC----CCCTCAGCC--AAGAACCTAGAAGGGTAGAGG GAGAATTATCTTTCCTCTCTTACA---AAGC---CAACTCCCTTATTTTT---------CAGATGAGAAACTGGAGCCCA GAGAGGTGAAGC >Myotis_myotis TAAGTT---GCAAAAAGTGTTTCATTG-------------TCCCTCTACCACAT-----------TCAAAAGGC-----T TGC---ATGT---TGAAGGGGAGCAGAATTTGTCACCCCCAAATTT-GCCTCTGTGGTG-TAAGGATTATTGGGAGCTGA A-------AAGAGACAGGTTACATAGGAGAAGCTCAGAAAACT---CAGAAGTTACCCTTTTGTAG-GAGACATTT---- -------------------------------------ATGTTAACAAGG---GAAATCTCCATTTATAAG--TGTCTCTC TCGCTGTATCAGGAAGTGAAAGATGATTCTAAATTTATAAAAACTCTTATAGA-TGGAGAGGTAAATGACTTA-ATCTAA ATAACA----ACATTACCC--ATTTAC---------AGTGCTTTGCCCCATAATTGTCCATAAAAAATTAT-GGCTGCCG ---CTTCCAACATTTTCCTTTGTCTTTAGCTGGAGATGGTATTTAAGATGGTGG------------TGGAGAGTTACTCA GTTAGCCTGCGTATCGCCCATGTATACAAGAGATATGC--ATGTTATTAAACTTCTGTTTTCTTT------CCCAGTGC- -----------------TTTTATTTCAGGCGTGAGGAGGAAGGTAGGTGTCTCAGCC--AGGAACCCAGATGGGTAAAGG AAAAACAATTTTTCCTCTCCTACA---GAGC---CAAGTCCCTTATTTTT---------CAGATTAGAAACTGGAGCC-- AAGAAGTGAAGC >Rhinolophus_ferrumequinum TAATTT----TAAAATGTATTTCACTGCCTACT------ACCCCTCCTCCACAC-----------CCAAAAGGG-----T TGC---AAGC---TAAAGGGGAGCAGAATATGCCACCCCAAAATAT----------------------GCCTTGAGCTGA TTATTTTTAAGAAAGAGCATACACCAGACAAAATCTGAAAACTGAGTTGTAA----------GTAA-GAGATACTT---- -------------------------------------------ACAATG---GAAATCTTGATTTGTATG--TGTCTCCC TGCCAGGACCAGGAAAAGAAGGATGA--------TTCTAGGAATTCTTATCTA----AGAAGGCAATGACCTAAATTTGC ATAACA----GCCTTACCCTTATTTACTGTATGTGTTGTGCTTTGCCTAATAACCTCCCGTAA------CT--------- A--CCCTCAATATCTTCCTTTGTTTTCAGCTTCAGTTGGTATTTAAGATGTTGG------------CAGGGAGTTATTCA GTTTTCCTGAGTATTTCTTGTGTGTACAGGAGGTGTAC-----ATATTAAACTTTTGTTTCTGTT----TTTCTGCTGTC AATCT------------TTTTATTACCAGTGTGGGGGTGGGGTGAGGTGGCTCATCC--AGCAACCTATATGGGTAGAAG GAAAATTATATTTCCTTCCCTGCA---AAGC---CAACTCCTTTATTTTT---------CAGATGAGAAACTGGAGCCAA GAGAGGTGAAGC >Condylura_cristata TACTTT---GCATCAATTGTTTCCTTGCCAGTACCTGCCACCCCTCCCCCCTCC-----CCAGCCCCCAA---GTTACAC TGA----------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------AAGC---CAACTCCTGTATTTAC---------CACA-GAGAAATTGCAGCCTG GAGAGGTGAAGC >Scalopus_aquaticus TAGTTT---GCATAAATTGTTTCATTGTTAGT-------ACCCCTTGCCCCTCC------------CCAAAGGGTTACAT TAG----------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------AAGC---CAACTCCTGTATTTAC---------CAGATGAGAAACTGCTGCCCA GAGAGGTGAAGC >Homo_sapiens TAATTT---GTAAAAACGTTTTCACTGCCTGCTAGCCCCGCCTCTTCTCTGCCC----------CTAGAAACGG-----T TGA----------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------AAGC---CAACTCCCTTATTTTT---------CAGATGAGAAACTGGAGCCTA GAGAGGTGAGGC Dog47_LTR >MER34C_CF ----------------------------------------------------------------------TGTTGA---G GAGAAAAAAATTTTCCTCTACCCTTCTAGGTTCTTCTGGCTGGTCTAAGAATCAAAT--TGACATAAGACAGATTAACAG GAGAAAAACAAACAAAAGTTTAATAACATATGTATACCTCC-TGTATACATGGGAGAGACCCAGGAAAACTGAGT-AACT CCCCGAAATGGCCCAAGCCATCACCTTAAATACCATCTCCAGCTAAAGA--CAAAAAAGATGT---TGGG---------G GTGGGG--------AGTCAGTTATGGGAGGTTACCAGGA-AAAGCACAG---TAAACAAGGGTAAGGTTGTTATGCAGAT TTAAGTCCTTGCCTTCTCCATTGATAAGAGTTTCTAGAGAT--------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------TTAGAGTCATCCT-----------CCTCTTCCTGGTACAGAGAGGGAGACA CCCTTACAAATGG--AGATTTCCCTTATAAATGTAAATGTCTCTTAC-AAAAGGGTAACTTCTACT--CGGTTTTCAGAG CTTCTCCTGTGTCTGCAG-TTTCTTAAAA--ATAATCAGCCTAAAATAATCCTTATGCCA-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------AAGAGGCATATTTTGGGGTG-----GCAAATTC TGCTCCCCT------TCA-------------------------------------------------------------- -------------- >Canis_familiaris CAACGAAACAGCAAGACATCACAATTTTCTACGACCTG--TTTTTC--ATATGTTCCAAA---TAAT---TGTGGGGGAA GAGAGACAAGTTTCCCTCTACCTCTCCAGACTCTT-------GGCTGAGACACCCCTTGGAATAAAAGACAGATTAACAG GACAAAAGCAGACAGAAGTTTAATAAC--ATGCATACCTCC-AGTATCCATGCGAGAGATGCAGGAAAACTGAGTAAACT CCGTGAAATGACCCAACCGACCGTCTTAGATACCATCTTCGG-TAAAGAAAAAAGAAAGATTT---TGGAGTGGGAGGGG GGGAAA--------GGCCAGTCTGGGGAGGTGAGCAGGC-AAAGCACAA---TAAACAAGGGTACAACTGCTAAGCACA- CTAAGTTGCTGCCTTCTTCTTTGAGAAGGGTTTCCAGAGAT--------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------TTACAATCATCCT-----------CCTCTTCCTGGTACTGAGAGGGAGACA CCCTTAGAAATGG--AGATTTCCTTTTTAAATGTAAATGACCCCTAC-AAAGGGGTGACTTCTACT--TGGTTTTCAGAG CTTTTCCAATGTCTGCTA-TTTGAAAAAAA-ATAATCACCCTAAAATAACTTTTATGCCA-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------AAGAGACACATTTTGGGGTG-----GCAAATTC TACTCCCT-------CCG---TTAT---A--AACCATGGGATAAAATTAATGCGAGAAAAA--AAA-------------- ---ATC--AACTTG >Felis_catus NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNN---NNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNCCCCCACCTTAAATACCATCTTCAG--AAAGACAAATGGAAGATTT---TGGAGCGGGGGGCG GGGGGGGGGGCGGAAGCCAGTTTGGGGAGGTGACCAGGC-AAAGCACAC---TAAGTCAGGCTACAACTGTTCGGCAGAT TTAAACCGCCGCCTTCTCCACTGATCCGAGTTTCC--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------CCAGAGTCACCCT-----------CCTGTTCCGGGTGCGGAGAGGGAGACA CCCTCACCGATGG--AGATTTCCTTTTTAAATGTCAATGTCCCCTAC-AGAAAGGCAACTTCTCCT--TGGTTTTCAGAG CTTTCCCCAGGTCTGCTG-TGTTTAAAAA--CTAATCAGCCTAAAGTAAGCCTGCTGCCA-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------AAGAGACATATTTCGGGGGGGGGGAGCAAATTC TGCGCCCCT------TCT---TAAT---A--AAACATGGGAGAAAATTAATGCAAGGACAA--GTAACTGTTTTTCC--- ---ATC--AAGTTG >Manis_pentadactyla CAACAAAACAG-----CAT--TAATTTTCTAAAGCATG--TTTTTTTCATATATCACAAG---TAGT---TGTGGG-GGA AAAACATAATTTTCCCTCTGTCCATATAGGTTCTT-------CACTGAGACCCATCCTGTAATAAAAGACAGATTAACAA GA-AAAAACAGACAGAAGTTTAGTAAC--ATGATTATCTCC-TATACACATGGGAGAGACCCAGGATAATAGAAT-TACT CCTTGAAATGGTCCAAGCCCTCACTTTTAATACCATCTCCAGTTAAAGA-CAAAAGATGTTACAGGTGGA---------G GGGGAA--------CACCAGTTATGCGTGGTGACCAGGA-AAAGCACAG---TAAA---------GGCTGTAATGCAGAT TTAAGTCCTTGTCTTCTCCATTGTTAAGAGTTTCTAGAGAC--------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------TGAGTCATCCC-----------CTTCTTCCTGGTAT--AGAGGGAGACA CCCTTACAAGTGG--GGATTTCCCTTATACAGTCAAATGCCCCTTAC--AAAGCATAACTT---TT--TGGTTTATAGAG CTTTTCCTATGTCTGCTA-TTTCTTAAAAA-ATAATTGGTCTAAAATAATTCTTATGAGA-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------AAAAG-CTTATTTGGGGGTG-----GCAAATTC TGCTCCCCT------TCA---TAAC---C--AAACATGGGAGAAAATTAATTCAGGAAAAT--AAAATTGTTTTTAC--- ---ATC--AAGTTG >Sus_scrofa CAAGAAAACAGCCAGACAT--CAATTTTCTAAGACCTC--TTTTGG--AAATGTTTGGAA---TAAT---TGTGGGAGAA GAAAAACAATTTTCCTTCTACCCTGCTAGCTTTTT-------GGCTGACACCCACTG-----------------TAACAG GAGGAAAACAG-GAGAAGTTTAATAGC--ATGGATCCCTCCTTGTATACCTGGGAAGGACCCAGGAAAAAT------ACT CCCTCAAACAGCCCAAGCCACCACCTTAAGTACCATCTCCAGCTAAAGACCAAAGAAAGATGT---TGAG---------G GCAAGG-----------GAGTTGTGGGAGGCTTTCGGGCAAAAGCACAG---TAAACAAGGATAAAGTTGTTATGCAGAT TTAAATCATTGTCTTCTCCACTGATAAGAGTTCCTAGACTT--------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------CTAGA----CCCT-----------CCTCTTCACAGCACAGACTGGGAGACA GTCTTACACATGG--AGTTTTCCCTATAAATGGTGAAGGTCCCTTAC-AAAAGCATTGCCTCTACTACTGATTTCCAGAG CTTTTCCCACGTCTACTG-TCTCTTAAAAACATAATCTGCTCAAAATAATCCTTATGCCA-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------AAGAGGCATATTTTAAGATG-----GGAAATTC TGCTCCCCTTCATAATCA---TAAT---C--ATATGTGGGAGAAAATTAATGCAGGAAAAA--ATAATTGTTTTTGT--- ---GGC--AAGTCG >Tursiops_truncatus CAGCAAAAGAACAAGACAT--CAATTTTCCAAGATGCG--TTTTTT--AACTGTTTCAAA---GAAT---GGTAGGAGAA GAAAAATAATTTTCCTTCTACCCTGCTAGATTCTT-------GGCCGAAACCCCCCG-----------------TAACAG GATGAAAACAA-CAGAAGTTTAATAGC--ATGGGTCCCTCT-TGCATACATGGGAGAGACCCAGGAAAACTGAGT-AACT CCCAGAAAT-GTCCAAGCCACCACCTTCAATACCGCTCCCAGCTAAAGACCAAAGAAAGATGC---TGGG---------G GGAGGG--------AGCCAGTGATGGGAGGTTTTCAGGC-AAAGCACAG---AGAACAAGG---------TTGTGCAGAT TTAGGTCACTGCCTGCTCCACTGATAAGACTTTCTAGAGAT--------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------TTAGAGTCACCCTCGTCTTCCAAATCTCCTCCTGGTACAGATAGGGAGACA CCTTTACAAACGG--AGATTTCCCTTGTGAATGTAAATGTCTCTTACAAAAAAGGTAACTTCTACT--CAGCTTTCAGAG CTTTTCCTGTGTCTGCTT-TTTCTTAAAAA-ATTATCTGCTCAAAATAATCCTTATGCC--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------AGAGGCATATTTTGAGGTG------GAAATTC CGCTTCCAT------TCA---TAAT---C--AAACATGGGAGAAAATGAATGCAGGAAAAA--ATAATTGTCTTTAT--- ---GTC--AAGTTG >Equus_caballus GAACAAAACAGCAAGACAT--TGATTTCCTAAGACTTG--ATTTTT--ATATGTTTCAAA---TAAT---TGTGGAGAAG GAAAAGTAATTTCCCCTCTACCCTT-TAGGTTCTT-------AGCTGAGACTTCCTT-GTAATAAAAGACAGATTAACAG GAAAAACACAA-CAGAAGTTTAATAAC--ATGTATGCCTCC-TGTATATATGGGAAAGACTCAGGAAAACTGAGT-AACT CCCTGAAATGGCCCAAGCCACCAGTTTAAATACCATCTCCTCGTAAACA-CAAAAGAAGATAT---TGGG--------TT GGAGGG--------CGTCAGTTATGGGAAGTGAACAGGA-AAAGCACAG---TAAACAATGGTAAGGTTGTTCCACAGAT TTAGGTCATTGCCTTCTTCATGGATAAGAGTTTCTAGAGAT--------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------GTAGCCATCCCT----------CCTATTCCTGGTACTGAGAGGGAGACA CCCTTACAAATGTGCAGATTTCCCTCATAATTGTAAATGTCTCCTAC-AAAAGGGTAACTTCTACT--CAGTTTTCAGAG CGTTTCCTATGTCTGCTG-TTTCTTAAAAA-ATAATCAGCCTAAAATAATCCTTATTCCA-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------AAGAGACATATTTTGGGGTG-----GCAAATTC TGC-CCCCT------TCA---TAAT---C--AAACAGGGTAGAAAATTAATGAGTGAAAAA--TTAATTGTTTTTAT--- ---ATC--AAGTTA >Ceratotherium_simum CAATAAAACAGCAAGACAT--TAATTTTTTAAGATCTG--TTTTTT--ATATGTTCCAAA---TAAT---TGTGGAGAAG GAAAACTAAATTTCCCTCTATTCTTCTAGGTTCTT-------AGCTGACACCCCCCT-GTAATAAAAGACAGATTAACAG TAAGAAAACAAGCAGAAGTTTAATAAC--ATGTACACCTCC-TGTATACATGGGAAAGAACAAGGAAAACTGAGT-AACT CCTCAAAATGGCCCAAGCCACCACCTTAAATACCATCTCCAGCTAAAGA-CAGAAGAAGATGT---TGGG---------G GCGGGG--------G--CATTTATGGGAGGTGACCAGGA-AAAGCACAA---TAAAGAAGGGTAAGGCTGTTATGCAGAT TTAAGTCTCTGCCTTCTCCACTGATAAGAGTTTCCAGGGAT--------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------TT--AGTCATCCC-----------TCTCTTGCTGGTACAGAGAGGGAGACA CCCTTACAAATGG--AGACTTCTCTTATAAGTGTAAATGTCTCTTAC-AAAAGGGTAACTTCTACT--CAGTTTTCAGAG CTTTTCCTATGTCTGCTG-TTTCTTATAAA-ATAATCAGCCTAAAATAATCCTTATGCCA-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------AAGAGACATATTTTGGGGTG-----GCAAATTC TGCTCCCCT------TCA---TAAT---C--AAACATGGAAGAAAATTAATGCAGAAAAAA---TAATTGTTTTTAA--- ---ATG--AAGTTG >Myotis_myotis CAATAAAGTAGAATGAAAT--TAATTTTCTAAGAACTGGTTTTTTTTAATATGTTCTAAA---TTAT---TATGGAGAAA GAAAAATAATTTCTCTCTCCCCTTCAAAAGTTCTT-------GGCTAAGATACCGCATATAATAAA----AGGTTAACAG GTGAAAAA----CAGAAGTTTAATCGC--ATGGATATCTCC-TGTATACCTGGGAGAAA-----------GAAGT-AACT CTCTGAAATAGCACATGTCACCACCTTAAATACCATCTCCAGATAAAGA-CTAAAAAAAATGT---TGGA---------G GTGGAA-------GAGTTAGTTAC---AGGTTACCAGCC--AAGCTCAGTTATAAACAAGGGT---GTGGTTATGGGGAT TTAAGTCCCTGCCTTCTGCATTGATAAGAGTTGCTAGA------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------CTAGAGACT---------------TGTCAGCTTGGCACTGA--GGGAGACA TCTTTACAAATGG--AGATTTTCCTTGTAAATGTAAATATCTCTAAT-AAAAGGGTAATTTTTACT--CTGTTTTCAGAG TTTTCCTTGTGTCTGCAG-TTTCTTAAAA--ATAATC----TAAAATAATGCTTATGCTA-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------AAAAAACACATTTTGGAATGG----TTATATTC TGCTCCCCT------TCA---TAAT---C--AAACCTGAGATAAAATTAATGCAGGAAAAA--AAATGTTTCTT------ ---ATC--AAGCTG >Rousettus_aegyptiacus CAACAAAACAGCATGACAT--TAATTTTCTAAGGCCTGTTTTTT----ATAGGTTCCTAA---TAAT---TATGGGGAAA GAAAAATAA---TCCCTCTACCTTTCTAAGGTTGT------TGACTAAAACAATCCTA-TAATAAAAGACAGATTAACAG GAGAAAAACAA---GCAGTTCCATAAC--ATGGATACCTCC-TGTATACACGGGAGA--CTCAGG--------------- ------AATGGCCCAAGCCACCAGCTTAAATTACATCTCCAGCTAAAGACAAAAGAA---------TGGG---------G GGTGGT--------GTGCAGGTATGGGAGGTTTTAAAGC-AAAGCTCCC---TAAATAAGG-TACTGTTATTATGCAGAT TTAAGTCCTAGCCTTTTGCATTGATAAA--TTTCTAGAGATGTTGTCCCTGTTTCCATTTATTAAAACAAAACAAACCAA AAACAAAAACAAAACTAAAAAAACAGTACTGCTTGCCTAGGAATGAATGCTATATTTTCTAGGATTTGACATTTTCAGCA ATCAAACTACTAAAAACAGAATGCTAAATAGAATGATGTCATTTGTTTCCATAGACTATATTAGATATACTCGATATACT AGAGCGTTACAAAAATAATAATAATGAAAGTGAGACATTTCGTGGCAAACTTTGGGAGTAAGGTTGGGACTGTAATCCTC AAGTTATTTTGGGGAAAATGGGAAAAGGGTTAGAGTCAT--------------CCTCTTCCTGTTACAAAGAGGGAGACA CCCTTACAAATGG--AGATTGCCCT---------------------------------------------GTTTTCAGAG CTTTTCCTATGTCCGTTGTTTTCTTAAAA--ATAATCAGCCTAAAATAATCCTTAGGTCAAAAAGACTTTTTTTTTTCAC TTAATAACAATTTCATTTTTTTGCATTTTTATTTTTTTAATTCTTTAATGTCACAACATATTTGACCCCATTTACCACAT CTACCTTCTTCCTCCACCCCCACACTCTCTGGTAACCACTAGTATATTGTCCATGTCCATGAGTCTCTGTTTGTCCTGTT CATTTGTTGCTTTTTCGTTTATATCCCACATATAAGTGACATCATGTGGTTTTCAACTTTTTCTGTCTGGCTTATTTCGC TTAGCACAATTATCTTGAGGACCATCCATGTTGTCGCAAATAGCAGTATTTCATCTCTTCTTATGACTAATATTCCATTG TATATATGTGCCACAGCTTCTTTAGCCAGTCATCTATCGTAGGACACTTCAGTTGCTTTCATGTCCTAGCCACTGCGAAT AATGCTGCTATGAACATCGGTGTGCAAAATATCTTTTTGGATATGGGTTTTCAAGTCTTTGGCAAGTAAATACCCAGTAG AGGGATTGCTGGATCATATGGTAGATCAATTCTTAGTTTTTTGAGGAACCTCCATACTGTTTTCCATAGTTGCCAGTCCC ACCAGCAGTGTATGAGGGTTCCTTTTTCTCCACATCATTTCCAACATTTGTTGTTACTTGTCCTGTTGACAACAGCTATT CTAACAGGTGTGAGATGATTACTCATTGTGGTTTTGATTTGCATTTCCCTAATAGCTAGTGATGATGAGCATCTTTTCAT ATGTTTGCTGGCTACTTGCATGTCTTCTTGGAAGAAGTATCTGTTCCAAAAGACATATTTTGGGGTA-----ACAGAGTC TGCTCCCCT------TTA---TAAC---C--AAACATGAGA-----TTAATGTAAGGAAAA--AAAATA-TTTTTAT--- ---ATAATAAGTTG >Condylura_cristata CAACCAAACAGCAAGACAT--GAATTCTCTAAGGCCA---TTTTTTTTTTATGTTCCAAA---TAAT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------C--AAGCATGAGAGATACTTAATGCAGGAAAAAATATAACATTTTTTAT--- ---ATC--AAGTTG >Erinaceus_europaeus CAACAAAAC--------ATC-CATTTTTCTAACACCTG--TTTTTC--ATATGTTCTAAA---TAAG------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------C--AAATATGGAAAAAAAT-AATGCATGAAAAA--GCAATAGTTTTTCTTTT TTAATC--AGCTTA >Tupaia_chinensis CAACAAAAC--------AT--TAATTTTCAACAATTTG--TTTTGT--ATATGCCCTAAA---TAAT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------CTTAAATGTGTGCAAAATTTAACTGAGGGAAAA--GTAATTATTCTTAC--- ---ATC--AAGGTG Dog50_LINE >L1MA9_3END -----------------------------------------------------------------------------TTT TTCC------AGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATA TACGTATACATTGTGAAATGATTACCACAATCAAGCTAAT---------------------------------------- -------------------------------------------------------- >Canis_familiaris TAACATAATCATGCAACTAAATGCAACAATGCAACTGTATAACTAGAAATAATTTGGC---TTCTCAAATTTTG---TTT CACTTAAAAATTTTTTACTGAGGTATAGTTGACATAT-AGCATTATATGTGTTTC-GATGTATGATATGATGGTTTAATA TTTTTATATATTGTGAAATGATTATTATAA------------------TAATTTTTTT-----TAAAAAGCAAA-----C CTTTCCCCATTTCCTTCA-CTCAGCAAAAGATTTCTTCGCATG-TAACTTTGAATA >Felis_catus TAACATAATCATACAAGTGGATGCAACAATGCAATTTTATTACTAGAAATAATTTGGT---TTCTCAAGAT------TTT TACTTAA---ATTATTCTTGAGGTATTATTGACATAT-AGCATTATATGTGTTTC-GATGTATGATGTAATGATTTGATA TTTCTATATATTGTGAAATGATTACTACAA-------------TAATCAAATATTCTT-----TTAAAGAAAAA-----C CTTTCCCCATGTCCTTCA-CTCTATGAAAGATTTCTTCACACA-TAAC--TGAATA >Manis_pentadactyla TAGTAAAATCATGCAAGTAAATGCTAC--------TATAGTATTAG-AATAATTTGGT---TTCTCAAATA-TT---TTT TACTTTAAAAATTTTTAGTGAGGTGTAATTTACATAT-AACATACTA---GTCTCAGATATAC------ATGACCCAATA TTTGTATATATTGTAGACTGATCACTACAA-------------TAATCTATTTTTTTTA----AAAAAGGAAAA-----C CTTCTCCCATCTCCTTCACCTCAATAAAAGACTT-TTAATACA-TAACTTTGAATA >Sus_scrofa TAACATAATCATGAAAGTTAA--CTAC--------TATAGTACTAGAAATAATTTGGT---TTATCAAATAATT---TTT T----AAAAAATTTTTATTGAGATATAATGGTCAT---AACATTATATTAGTTTCATATGTAACA---AATGATTCAATG TTTATAAATACTGCAAAATGATCACTATAA-----------------AGAAATATGTTT----TAAATATGAAA-----A TCTTCTCTCTTTCCTTCA-CTCAGCAAAAAAATTTTTCATGCA-TAACCCTGAACT >Bos_taurus TACCATAGTCATGAGAACAAAT-CTAC--------TATAGTACTGGAAATATGTTGGT---ACATCAAATAATT---TGT TTTTTAA---AATTTTATTGTGATATAATT--------AACATTA-----ATTTTATGTGTATAACACAATGATTCAGTA TTTGCATATATTGCAAAATTATCCTTACAA-------------TACTAAAAATATTTT-----TAAAAAGA--------A TCTGCCCCATTTCTTTCA-CTCAGCAAAAGATTTCTTCACAC---AACTCTGAATA >Equus_caballus TAAGATAATCATGCAAGTCAACACTGC--------TAGAGTACTAAGAATAATTTAGT---------------------- -------------------------------------------------------------------------------- -------------------------------------------TTCTCAAATA-TTTT-----TTAAAGGAAAA-----A GTCCCCCCATCTCCCTTG-TTCAGTAAAAGATTTCTTCACATG-TAACTGTGCCTA >Ceratotherium_simum TAAGATAATCATGCAAGTAAATGCTGC--------TATAGTGCTAGGAATAATTTGGT---------------------- -------------------------------------------------------------------------------- -------------------------------------------TTCTCAAATTTTTTT-----TTAAAGGAAAA-----C CTTCCCCCATCTCCTTTG-CTCTGTAAAAGATTTCTTCACATG-TAACTGTGCATA >Myotis_myotis TAACA---TTATGCAAATAAATGCTAC--------TATAATACTAGAAATAATTTGAT---------------------- -------------------------------------------------------------------------------- -------------------------------------------TTCTCCAATATATTGT----GAAAAAGAAAA-----C CTTT----ATCTCCTTGA-------AAAATATTTCTTCACATG-TAAC--TGAATA >Rousettus_aegyptiacus TAACATTACCATGCAAATAAATGCCAC--------TATAGTGCCAGAAATAATTTGAT---------------------- -------------------------------------------------------------------------------- -------------------------------------------TTCTCAA---TTTTT-----TTTTAAAAAAA-----C CTTTTCCCATCTCTTTTT-CTCAGCAAAAGATTTCTTCGCATG-TAGCTATGAATA >Condylura_cristata TAACATAACGATGCGAGTGAATACTAC--------CATACTACCAGCGATAATTTGGT---------------------- -------------------------------------------------------------------------------- -------------------------------------------ATCCCATATAACTTTC----TAAAAAGAAAAA----T CTTCTCCCTTTTCCTTTG-TTCCACAAAATATTTCTTCACATGTTAATTGTGAATA >Erinaceus_europaeus TAATATAAT--TGAAATAAAATGCAAC--------TGCAGTTCTAGAGATGATTTGCA---------------------- -------------------------------------------------------------------------------- -------------------------------------------TTTTCAAGTATCTTTCT---CAAAATGAAAA-----C TTTCTTCCACCTCCTTTC-CTTAGCCAAATATTT----------------TGAATA >Homo_sapiens TAATGTCATAATGCAAGT-AATGCCAC--------TATAGTATTAGGAATAATTTGCT---------------------- -------------------------------------------------------------------------------- -------------------------------------------TTCTCAAATATTATT-----TAAAAAGAAAAAAAATA TTTCCCCCATACCCCATG-CTCAGCAAAAGATTTCTTCACATG-TAACTGAGGATA Dog57_LINE >L1MA9_3END -------------------------------------------------------------------------------- --TCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGTACAGCATGGTGACTATAGTTAA TAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCACCACACACAAAAA----------- ----------------------AATGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTC ACAATGTATACGTATATCAAAA-CATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATA AAGCTGG-AAAAA------------------------------------------------------------------- ----------------------- >Canis_familiaris CTGATTATTTCCTTCATTTGAACACCTCTACTTTTTTTTA---TTTCT---TGAAAATCACTTCATATGG---TTAAAA- --------GGTACAAACTGTGAGCTGT--AAG-----TAAGTATGAGGGATGTGATGTACATTAGTATGACTATTGCTAA CACTGTTGTGTGATACATAAGAAAGTTGTCA--AGAATGGATTCTGAA--TTCTTACCACAGACATTTTCTTCTTTTTTT CTGTTTTCTT-----TTCCTTTTATTGTATCTATATGA-TTTATG--TATTTTAGCTGAACCTACTGTGATAATCATTTC ACAA--TATATGTGAATCAAAT-TATGGTGCTG-ATATCTTAAACTTATCCA-GTGATGTATGTCAATTGCTTCTCAATA TAACTGG-GGAAAATAAAAACGAATTTAAAAATAAT---TTTTAAA---ATTATCTT-TTAAAATTAGCT----CATATA TTCTGGGGCTTGATAT-AAAGAG >Felis_catus CTGATTATTTCCTTCATTCGAGCACCTCTGG-TTTTTTAC---TTTT-----GAAAATCACTTTATACAC---TTAAAA- --------GGTACAGACTTTGAGTTAT--AAGTTAAATAAGGAGTAGGGATGTAATGTACAAAAGTATGACTATAGCTAA CACTGCTGTGTGATACATAAGAAAGTTGTCAAGAGAGTAGATACTGAA--TTCTTATCACAAGGAGAAT----TTTTTTT CTTCTTTCTT-----TTCTTTTTATTGTACCTATATGT-ATGATG--TATTTTAGCTGAACATATTGTGATAATCATTTC CCAG--TACATGTGAATCAAGC-CATCATGATGTATGACTTAAATTTATACA-GTAATGTATTTCAAGTATTTATCAATG AAACTCT-AAAAAATACAAAGGAATTTGAAGATAAT---TTTTAAA---ATTGCCTC-TAAAAATTAGCT----CATATA T-CTGGGGTTTGATGT-AAAGAG >Manis_pentadactyla CCCATTATTTCCTTCATTCAAACTCCTCTACTTTTTAAAA---TTTCT---TAAAAATCACCTTATATGG---TCAAAA- --------GGTACAAACTTACAGTTAT--AAGATAAACAAGTACTAGGGATGTAATGTACAA-ATAATGACTATAGTTGA TACTACTGTATGGTATAGAGGAAAATTGTTAATGGAGTAAATCCTAAAAGTTCTCATTACAAGGAGAAA-AAATGTTTTT ATTTTTTCTTCTCTGTTTTCTTTTCTTTGTCTATATGAGAAGATG--GATTTTAGTTTAACCTATTGTAATAATCATTTC AGAG--TACATATAAATC-AAC-CATCATGCTGTATGCCTTAAAATTACA---GTG--ATTTGTCAATTATATTTCAATA AAACTGGAAAAAAATAAAAAGGAATTTTAAAATAAT---TTTAAAA---G-CACCTCATTAAAATGATCTCAAATATATA TTCTGGGACTTGGTGT---GGGG >Sus_scrofa CCCATTGTTTCCCTCATTTGAACACCTCTAC--TTTTTTA---TTTAT---AAAAAATCACTTTATATGT---TCTAAA- --------GGTACACAGTTCCAGTTAC--AAGATAA--AAGTGATAGCATTGTAATGTACAACATGATAACTAGAGTTAA T--TGCTGTATGATATATGGGAA---CATTAAGAGAATAAATCCTAAAAACTCTCATTACAAAGAAAAT----------- CTTTGTTTTT-----TTCTTTTTACTGTATCTATGTGAGATGTTG--TTTGTCAGTTGAACCTACTGCGGTAATTATTTC ACAA--TATGT-TAAATCAAAC-CATAAT--TAAATGTCTTAAATTCATA---ATAATATATGTCAATTATTTTGCAATG AAACTGG-AAAAAATAAAAAGGAATTTAAAAATAAT---TTTAAAA---ACCACTTTATAAAAATTAGTTCAAAAATATA TCCTGGGACTTGGTGT-AAAAGG >Bos_taurus CCAACTGTTTCTTTCATTTGAACACATCTATGTTCTTA-----TTTCTAAAAAAAAATCACCTTATATAG---TCAAAA- --------GGTACAAGCTTCCATTTCT--AAGATAAGTAAGTGCTAGGGTTGTAA--TATAACACGATGACTAGAGTTAG CAATGCTGTGTGAAATATAGGAAAGTAGTTAAGAGGATCAATTATAAAAGTTCTCATCACAAGGAAAAG-AAATTGTTTT CTTTTTTCTT-----TTCTCTTTATTGTATCTATATGAGATGATG--TAGGTTTGCTGAATCTATTGTGGTAATTATTTT ATAA--TACATGAAAGTAAAAAGCATCATACC--ATATCTTGAATTTATACTTGTGATATATGTCAATTATTTTTCAATA AAACTGG--AAACAAGAAAGGAATTTTGAAAATAAT---TTAAAAA---A-AACCATATGA-AATTAGCTGAAAAATATG CTC--GGACTTAGTGT-TGAGGG >Equus_caballus CCCATTATTTCCTTCATTTGACCACTTCTAC-TTTTTTAA---TTTC----------TCATTT-----GC---TCAAAA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------ATCACCTTAGAAGAATTAGCTCAAACATACA TTCTAGGGCTTAGTGT-GAAGGG >Ceratotherium_simum CCCA-TAGTTCCTTCATTTGAATACCTCTACTTTTTTTTA---TTTC----------TCATCT-----GC---TCAAAA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------ATCACCTTATAAGAATTAGCTCAAACATACA TTCTGGGGCTTGGTGT-GAAGGG >Myotis_myotis CCCATTATTTTCTTCACTGGAACACCATTCC--TTTTTAA---TTTC----------CCATCT-----GC---TCAAAT- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------TTCACCTTATAAAAATTAGCTAAAACATATA TTCTGGGACATGGTGG-AAAATG >Rousettus_aegyptiacus TTTATTATTTCCTTCACTTGAACACCTCTCC-TTCTAAAA---TTTC----------CAATCC-----GT---TTGAAA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------ATCACTTTATAAAAATTAGCTGCAACACATA TTCTGAGTCTTGGTGT-AAAGGG >Condylura_cristata CCCATTAATTCCTTAATTTGAA-ACATATAC---TTTTTG---TTTC----------TCATCT-----TT---TTAAAA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------AACACCTTA-AAAAATTAGTTCAAACTTAGA TCA------GTGGTAT-GATGAA >Sorex_araneus CCTATTACAT-TTTCATTTGAA-ATCTTTAA--TTTTAAA---TTTC----------TAATCT-----GC---TAAAAA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------ATCACCTTATA---------------TTATA TTCTGAAACATGGTGTAAAAAAG >Homo_sapiens GCTGTTATATCCTTCATATAAACACCCCCAT--TAAAAAAGCTTTTT----------TCATCC-----GC---TCAAAA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------ATCACCGTATAAAAATTAGCTCAAACATA-- TTGTGGGACTCTGTGT-GAATGG Dog58_LTR >MER21C ----------------------------------------------------------------TGTGTAGGAAAAAACA AAC-------TGTTTTTCT--------------------CTACTCTCACAACACTTCTGNCACCAAATGTGTGGGGTTTT ----------------TCCCACACACCAAGCAATTCTCCAGCGGACACCAGCTGGGTGTCCTACAATTCAATTCAATTCT GACACTATCTACCTGGAGNTAGCGTCAGATCCCACAGGTTAAGGGCTCAGTCCCACAAGACTGCCCCCAC---------- ------------------------------TTCAGACGCCAATC-GCAAGTCCCAGGTTGTGACCTGTACTTCTGACCGA CCGGCTATAAATC-GGGGGTTCCCACGACCCCCTCCTCGGGTTCGA-TAATTTGCTAGAGCGGCTCACAGAACTCAGGGA AACACTTTACTTACG-TTTACCGGTTTATTATAAAGGA----TATTACAAAGGATACAGAT----GAACAGCCAGATGGA AGAGATGCATAGGGCAAG--GTATGTGGGAAGGGGCGCGGAGCTTCCATGCCCTCTCCGGGCGCGCCACCCTCCCGGCAC CTCCACGTGTTCAGCAACCCGGAAGCTCTCCGAACCCCGT-CCTTTNGGGTTTTTATGGAGGCTTCATTACGTAGGCATG ATTGATTANATCATTGGCCATTGGTGATCAACTCAACCTTC--AGCCCCTCTCCCCTCCCCGGAGGTCGGGG-GTGGGGC TGAAAGTTCCAACCCTCTAATCACATGGTTGGTTCCCCTGGCGACCAGCCCCCATCCTGAGGCTATCCAGGAGCCCCCAG CCAAGAGTCACCTCATTAGAACAAAAGACGCTCCTATCACCCAGGAAATTCCAAGGGTCTTAGGAGCTCTG---TGTCAG GAACCGGGGTCAAAGACCAAATATTAGAACAAAAGATTCT----CCTAGCGCCCCTATCGCTCAGGAAATTACAA-GGGT TTTAGGAGCTCTGTGCCAGGAACCGGGGGCAGAGACCAA-ATATATATTTCTTATTATATCACAATATCACA-------- ------------------------------------------------------- >Canis_familiaris GGAT--ATGATTCTGGAGTTTGAGAAGGGCTTCTGGGCTAGGGATATAGATTT---GGGAG---TGTTCAGAAAGG--CA GTCC------TGTGTTTCTCCCTTACTCTCACAGAGCTGCTATACTCAGAACA---------CTAGAGGTGGGTGGT--- ----------------TCTCTCACAACAAGCAATTCTCTG--CAACTCCAGCTGGGTTTCCTACAATTGAACTCAATTCT GCTACCGTGTACCTGGACATAGCATCAGAT--------------GTTCAGTCCTATAAGACCACCCCCAA---------- --------------------------GCAGTTCAGGTGCTAATT-GCAAGC-CCAG-TTGTCACCTCTATGTCTGATCGA TCAGCTCTAAACT-GGAGGTTCCCATGACCTCCTCTTCAGGTTCCATTAATATGCTAGAGTGGTTCACAGAACTCAGGAA AACAGTTTATTT------------TTTATTATAAAAGGA---TATGATAAAGGATACAGGTAAACAAACATCCAGAGGGA AGAGATGAGTAGGACAAG--GTATATGGAAAGGGGCAAGGAGCTTCCACGCCCTCTGCAGTCATTCTTCTCTCCCTGTAC CTCCATGTGTTTGCCCACCTGGAAGCTCTCCAAACTCCATACTTTTAGGATTTGTATGGAGGCTTCACCATGTAGGTGTG ATGCATC-------------------ATTGCCTCCATTTCC--AGCCTCTTTCCCTTCTTTGGAGAGTGAGCTATGGGAT TAAAGCTTTCAAGCTCTTAATCATG-GCTTGGTCTTTTTGGTGACCAGAGCCTATCCAGG------------------AA CCCAGAGTTGTTTCATTATAAGAAAAGACACTGCTATCACCTGGGAAATTCCAAAGGATTTAAGAACTCTG---TGTCAG GAACTAGGATCAAAGACCAAGTTTTAGAACAAAAGATGTT----CTTCGCACTCTAGTCACTCAGGCAATTACAA-GAGT TTTAGGACTTTCATGCCAGGAACTGGGTGCAGAGACCAATATATATATTTTCTGTTATC--------TTACA---GGGAG ---CCATCAGAGACCCACTAAAATATGGGGTAAGTTAATTTATGGAGATTGTAAT >Felis_catus GGAT--GTGACTCTGGGGTTTGAGGAGGGGTTCTTGGATGGAGATATACATTC---AGGAG---TGTTTACAAAGACTCA GTCCTTCTCCTGTGTCCT---CTTACTCTCATAGTGCTGTTACACTCAGAACA-TTCTGACGATAGAAATGTGTAGGT-- ----------------TTTCTTACAACAAGCAGTTCTCTG--CAACCCCAGCTGGGTGTCCTACAATTTAACTCCATTCT GATACTGTGTACCTGGACATTGCATCAGATCCCACAAATTAAGTGTTCAGTCTTAGAAGACCACCACCAC---------- -----------CCCCCCCCCCCACACGCAATTCAGATGCCAGTT-CCAACT-CTAG-CTGTCACCTACGCTTCTGACTGA TTAGCTATAAACA-GGAGGTTCCCATGACCCCCTCTTTAGGTTCCATTAATTTTTTAGAGTGGTTCACAGAACTCAGGAA AACAGTTTACTTACT--------GTTTATTATAAAAGGA---TATGATAAAGGATACAGGT----GAACATCCAGATGGA AGAGATGGCTAGGAAAAGGTGTGTGTGGGAAAGGGCGAGGAGCTTCCACCCCTTGTGCAGGCATGCCTCTCTCCCTGCTC CTCCACATATTTGCCCATCTGAAAGCTCTCCAAGCCCTACACCTGTAGGATTTGTATGCAGGCTTCATCATGTATGCATG ATCCATA-------------------ATTACCTCCATTTCC--AGTCCCTCTCCCTTCTCTGAAGAGTGATGTGTAGGAC TCAAAACTTCAAGCTTCGGATCAAG-GCTTGGTCTTTCTGGTGACCCCCACCCACCC----------------------- -------TTGCCTCCTTAGAACCAAAGACACTGCTATCACCTGGGAAATCCCAAAGGATTTAGGAACTCTG---TGTCAG GAACTGGGGTCAAAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNN ---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Manis_pentadactyla GGAT--ATGGCTCTGGAGTTTGACAAAGGGTTCTGGGATACAGCTGTAACTTT---GGGAG---TATTTAGAAAACCTCA GCCCTCCATCTGTGTGTCTCCTTTCCTGTCATATCACTACTACCCCCACAATACTTCTGATACCAGGTGTGTATGTGGGT GTGTGTGTGAGGGGGATTCTTCCCAACCATCAACTCTCTG--TGACACCAGGGGGATGTCCTATAATTTAACTCAGTTCT GACACTGTCCACCTGGAGACAGTGTCAGATCCCACAAGTTAAGGCTCCAGTCCTATGAGACTGCCTCCCCCCATGCCTCC CCATCCCCTCAACACCCCCACCCCATGCAATACAGATGCCAATT-CCAAGT-CCAGATTGTCACCTGCACTTCTGGCTGA TCAGCTATAAATT-AGAGGTTCCTATGATCCCCGCTTCAGGTTCAATTAATTTGCTGGAATAGTTCACAGAACTCAGG-- AGCAGTTTACTTACC-CTCACCAGTTTATTATAAAAGCAGTTTAT-ATAAAGGATACAGAT----AAACAGCCAAATGGA AGAGATGCACAGGACAAG--GTATGTGGGAAGGGGCGTGGACCTTCCATGCCTTCTCCAGGCACATCACTCTCCCTGCTC C--------------------------------ACTCCATACTTCTAGGATTTTTATGGAGGCTTTATCATGTAGGCATG ATTGATC-------------------ATTAACTCCATTTCC--AGCCCCTTTTCCCTCCCTGGAGAATGGAGGGTGGGGC TGAAAATTCCAA-CTTCTAATCGTG-GCTTGATCCTTCTGGTGACCAGTCCCCTTCCAGGAG--------------CCCA CCCAGAGTCGCCTCGCTGGAACAAAATACACTCCTATCACCCAGGAAACTCCAGTGGAGTTAGGAACTCTG---TGTCAG GACCCTGGGTCAAAGATTAAATATTAGAACAAAAGAGGTTGCTAGTTAGTGCTCTTATCACTTTGGAAGTTCCAG-GGGT TTTTGGAGCTCTGTGACAGGACCTGAGGGCAGAGACTAATATACGTATTTTCTGTTATC--------TTACA---CGGAG ---TCGTCAGAGACCCACTAAAATATGTAGCAAGTTAATTT---GAGATAGTAAT >Condylura_cristata GGAT--ATAACTCTGGAACTTGAGTAGGGG-TCCAGCATAGAGGTATAAATTT---GAGAG---TGTTTAGGGAATTTCA GTCCTCC-TCTTTATACTTTCTCAGCTATC-CCCAACTGTCATACTTGCAAC--TTCTGATACCAGCTGCGTGGGGCATT ----------------TTCTGCACAACAAATATATCTCTG----ACAAAAGCT-GATATCTTACAAATTAATAAAAATTT G--ACTATCTACTGGGAGATGGATTGAAGTTCCACAGATTCAGGGGCCACCCCCA--------CCCCCACATAT------ -------------------CTCTTGTGCAGCTCAAATGCCAATTAGCAAAT-CTAG-GTGTCACACATGCTTCTGACGTA TCATC---------AGAAGTTTCCATGACGTCCTCTTCAGATATGATTAATTTACTAGAATGGTTCACAGAATTTAAGAA A--AGTTTACGTACTCTTTGCCAGTTTGTTAGAAAAGAA---TATGATAAAGGGTAT-GAT----GAACACCCAAATGGA AGAGATGCAAAGGTCAAA--------------AGGCACGGAGCTCCCATGTTCT-TCCAGTTGCCTCA---TGCATTACC CCTCAAGTATTAGCAAACCTGGAAGCTCCCAAAACACTGTATTTTTAGGATTTGGGGGGAGGCTTCCTCACACAGTAATG ATAGCTC-------------------ATTAATTCCATTTGCAGAGCCCTTCTCCCTTCTCTGGGCG-------------- -------------CTTCTAATCA---GACTTGATTTTCTGGTG-CCAGACCCCATCCAGG-------------------- -----GGTCATCTTAGCAGAACAAAAGACACTGCCATCACC-AGGAAATTCCAAGGGATTTAGAGGCTCTGTGATGTTAG GAACTGGGGTCAAAACCCAAATATTAGAATAAAAGATGCT----CTTAGTACTCTAATCAGTTAGGAAATTACAA----- -----------------GGAATTGGGGGACACAGTCCAATA-ATATATTTTCTGTTGTC--------TCACA---GGAAG ---TCATCAGAGATCCACTAAAATATATAGCAAGTTAATTTATTGAGATAATAAT >Solenodon_paradoxus GGCC--ATGACTCTAGAGTTTAAGAAGACAGTCTGGGATAGTGATGTAAATTT---GGGAG---TATGTAGAAAACTTTA GTCTTCA---TGCATTTC-------CTCTCACACTGCTACCACACTCACAATAGTTTGAACACCCAATTGATGTGGAGTT ----------------TTCTCCGTAATTAGAAATTCTCTG--CTACACCAGCTAAATTTCCTAGAATATAACTTAATTCT GACACTGTCTTCCTGGAGCTAGAGTTAGATCCCACAGA------ATTCAGTCCTACAATGCTACCCCCTT---------- --------------------------GCAGTTCAGATGCCAATC-ATAAGT-CCAGGCTGTCACCGTTGCTTCTGACCCA TCAGTCATAAATCAGGAGGATCCTATGACCCCTTGTTCAAGCATGATTAATTTGCTAAAGAAGTTCACAGAACTCAGAAA AACAGTTTGCTTACTGTTTTTCAGTTAATTATGAAA------TATGATAAAAGATCTAGAA---TGAATATCCAAATGAA AGAGATGCAAAGGA-AAG--GTATGTGGGA--GGGTACAGAGGGTTCCTGTTCTTTCTGGGTGCCTGACTCTCCTGGCGC CTCCTTGTGTT-----------GAGCTTTCCAAACCCCATA---------------------CTTCATCATGTAGGCATG CTCAGCC-------------------CTTAACTTCATTTCC--AGTC-CTCTGCCTTCTCTGGAGAATGATGTA------ -------------------------------------------------------CCAGG-------------------- -CAACAGTCACCTCATTAGAGCAAAAGACATTGCTGTCCCTCAGTAAATTCCAAGAGATTTAGGAGCTCAG---TGTCAG GAACTGGGGTCAAAGAATAAATATTAGAACTAAAGATGTT-----------CTCTTATTACTTAGAAAATTAGGGTGCAC ATATACATATACATTTCAAAAACTCTATCAATATTGACATGTAGAAATATGTTGTTATT--------TCACA---GGGAG ---TCATCGGAGACTCACTAAAATAGGTAGTGAGTTAATTTATTNNNNNNNNNNN >Sus_scrofa GAGT--ATGACTCTGGAGTTTGAGAAGAGAGTCTGGAATAGAGATATAAATTT---GAGGG------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---TTACCAGAAA-CCACTAAAATATGTAGCAGGTTAAT-TATG--GATAATAAT >Vicugna_pacos GGGT--ATGACTCTGGAGTTTGAGACGGGAGTCTGAAA-AGAGATATAAGTTT---GAGAG------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---TCATTGGAAACCCACTAAAATATGTAGCAAGTTAA--TATT--GATAGTAAT >Equus_caballus GGAT--ATGACTCTGCAGTTTGAGAAGGCAGTGTGAGATCGAGATATAACTTT---GAGAG------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---TTATTAGAGACCCAAGAAAATATGTAGAAAG-TAATTTATT--GAGAGTAAT >Ceratotherium_simum GGAT--ATGACTCTGGAGTTTGAGAAGGAGGTCTGGGATTGAGATATAACTTT---GCGAG------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---TCATTAGAGATCCACTAAAATATGTAGAAAGTTAATTTATT--GATAGTAAT >Miniopterus_natalensis GGAT--ATGA--CTGGAGTTTGAGAAGGAAGCCTGGAATGGAGATATAAGTTG---GGGCG------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---TCGGCAGAGACCCACTAAGATATGTAGCAAGTTAATCTATT--AATAG-AGC >Pteropus_vampyrus GGAT--ATGACTCTGGAGTTTGAGAACGAAGTCAGGAATGGAGATATAAATTT---GGGAG------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---TCATCAGGGACCCACTAAGATATGTAGCAAGCTAATCTACT--GATAGTAAC >Homo_sapiens GTATACATGACTCTGGAGGTTGAGA-GATGTTCTAGGATAAAGATATAAATTT---AGGAG------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---TCACCAGAGACTCACTAAAATACATAGCAAGTTAATTTATTGAGATAGTTAT Dog59_LTR >CARERVR1_LTR -------------------------------------------------------------------------------T GTTGGGGAAGGTCATCGAGAAGACGTGACCGCCGGTTGACCCGTGAGCTGGACCC-------------GGGCAATCAGAG GCTCCTCACCCCCTCCCCTGTCCTTGGAATGT--------GGGTTCCGCTTGCCTTCCCCGCTCCCAGAGGCTGCTCCAA GGACACAGCCTTGAGATAGTGATGT--------GGTGTTGAGAACACCTGNACGGTATACGTGACTGAACCCAGTTAAGG CCTCTATATAAACTTTTAAGATT-TGGCGGGCGGGTGCGGAGATCTACTCGTCTTGCTGCCGCCCAAGACAAGCCTCG-- -TATGTAAGTTCCCTTTGCTTATTAAANC-TGCCACCTACCAACCTGGAGTGGCCTGCCTCTTTCTTCGGTCTCTCCCTG CCCTCTGCGTACGGGGGCCGGTTTCAGA--TTACACCCGGGAAGCTCCCGAGGGGGTTGCGAACCAACA----------- ------------------------------------------------------ >Canis_familiaris TTGTTGAAGCCAAGGAGAAGGAGGTAGA-CCCCCATACCAAGCAAGTCTTTTGTCCAT---TTGGATA---CTCAG---T GTTGGAGGATGTTGTCAAGAGAATGTAACCACCAGTTGACCCAGGAGCTGGACCT-------------GGGCAGTCAGAG GCTCCTCAGCCCCTCCCCTGGCTTTGGAAGAT--------ATGTTCTGTCCACTATTCTCATAGTGGGAGACGTTTTCAA GGATGCACCCTTGAGAGAACAATGT--------GTTGTTGAGACCATCTGGACAGTATATGTGACTGAACCCAGTT-AGG CCTCGATATAAACTTTTAAGATTCTTGCAGGCCAGTATAGAGACCTACTCATCTTGCGGCTGCTCAAGACAACCCTTA-- -TATGTAAGTTCTC-TGGATCATTACACT-TGTCACCTCCCAATCTAGAGTGGTCTGCTTCTTTCTTTGGTCTCTCCTTG CTTTCTTTCTACAGGGACCAGCTTTTAAACCAGCA-------------------------------------CTCAG--- AAAAC----TTTCAT----TGACTAATCCTGACATGATGACTAGAAAATAGATG >Felis_catus TTGTTGAAGCCAAGGAGAAGGAGATAGC-TCCCC-CATCAAGCAAGCCTTTTGCCCAT---TTGGATG---CTCAG---T GTTGGAGGAGGTCATTAAGAGGACATGACCTCTGATTGACCCATAAGCTTGACCT-------------GGGTAATCAGAG GCTCCTGACCTCTTCCCCTGGCCTTGCAATAT--------ACATACGGTCCATTATTCTCACAGTGAGAGATGTTTTCAA GGATGCAGCCCTGAGAAAGCAATGT--------GTTGGTGAGACCATCTGGACCGTGTATGTAACTGAACAC-----AGG CTTGTATACAGACTTTTAAGATTCTCACAGGCAGGTATAGAGATCTACTCATCTTGTGGCTGCCCAGGAAAAGCCTCA-- -TACAGAAGTTCTC-TTGCTCATTAAACCTTGACATCTACCAATCTAGGGTGGCCTGCTTCTTTCTTTGGTCTCTCTTTG CCTTCTTTGTATGGAGGNNNNNNNNNNNNNNNNNN-------------------------------------NNNNN--- NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Manis_pentadactyla TTGCTGGG---------------------CCCCTATACCAAGCAAGTCTCCTGTCTAC---TTGGGTG---CTCAG---T GTTGAAGGAGGTCA---AGAAGGCATGACCACCAGTTGTCCTGTGAGCTGGACCC-------------AGGCAAACGGAG GCTCCTCA-CCCCTCCCCTGTCCTTGGACTGTCCTCGTCCCTTTCCCGTGCACCCTTCCCTCAGTGGGTGTTATTTTCAA GGATGCAGCCCTGGAAGAGCACTGTGGCGTTGCGTTGTTGAGGCCATCTGGGTGTTGTGCGTGACTGAACCCTGTTCAGG TCTCTCTATAAACTTCCGAGGTTCTGGTGGGTAGCTGTGGAGATGTACTCATCTTGCGTCTGCCCAAAACAAGCCTTGGC TTATGTAGGTTCCC-TTGCTTATTAAACC-TGCCCCCTACCAGTCTGGAGGGGTTTGCCTCTTTCTTCGGTCTCTCCTTG CTCTCTGTATATGGGGGCCAGCTCGTGAACCAACA-------------------------------------CTC----- AAAAG----TTTAGTGAACCAACTTATCCTGATACGGTAGCTAGGAAATATATG >Equus_caballus TCGTTGAAGCCAAGGAGAAGGAGCCAGGCTCCCAATACCAAGCAAGTGTTTTTCCCAC---TAGGGTA---CGTAG---T GTTGGAGGAGCCCAATGAGAGGACATCACCACTGGTTGATCCAAGAGCTACACCTGAGAGCTAGAGCCGGGCAATCAGAG GCTCCTCA-CCCATCCCCTGTCCTTGGAATGT--------GTGCTACAACCACTATTACCACAGTGGAAGCTGTTTTCAA GGACGCAGCCTTGAGAGAGCATTGT--------GTTGTTGAGACCAACTGAA-----TACATGACTGAACCCAGGTAAGG TCTCCATATAAACTTTTAAGATTCTGGCAGTCAGGTGTAGAGATCTACTCGTCTTGTGGCTGCCTAAGACAAGCCTCA-- -TCTGTAAGTTCCC-TTGCTTATTAAACC-TCCCACCTATCATTCTGAAGTAGTCTGCTTCTTTCTTTCGTCTCTCCTTG CCCTCTGCGTTCGGGGGCCAGTTTTCGAACTAACA-------------------------------------CTCAG--- AAACA----CTTAATGAATTAACTTATCCTGATACGGTGGCTACGAAATATATG >Ceratotherium_simum TTATTGAAGCCAAGGAGAAGGAGCTAGGCTCCCAAGCCCAAGCAAGTATCTTGCCCAC---TTGGGTG---CTCAG---T ATTGGAGGAGGTCATTGAGAGAATGTGACTGCTGGTTGACCTGAGAGCTAGACCC-------------GGGCAATCGGAG GCTCCTCA-CCCCTCCCCTGTCCTTGGAATGT--------ATGTTCTGACCACCATTCCTACAATGGGAGCCATTTTCAA GGACACAGCCTTGTGAGAACAATGT--------GTTGCTGAGACCATGTGGATGGTATATGTGACTGAACCCAGTTAAGG CCTCTATATAGACTTTTAAGATTCTGGTGGGCGGGTATGGAGATCTATTCATCTTGTGGCCACCCAAGACAGGCCTCA-- -TACGTAAGTTCCC-TTGCTTATTAAACC-TGCCGCCTACCAATCTGGAGCGGT----TTTCCTCTTTGATCTCTCCTTG CCCTCTGAGTTTGGGGGCCAGTTTTCCAACCAACA-------------------------------------CTCAG--- AAAAG----TTGAATGGGCTAACTTA-CCTGATACAGTGGCTAGGAAATATATA >Sus_scrofa TTGCTGAAGCCAAGGTGTAGAATCTAGG-TCTTAATATCAAGCAGGTCTTTAGCCCAC---CTGGGTG---CTCAG---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- AAAAG----TTTAGTAAT-GAACTTATCCTGAGACAGTGGCTTGGAGATACA-G >Bos_taurus TTGTTGAAGCCAA---CCAGAATCTGTG-TCCCAATACCAGGCAAGATTTTTGCCCAC---CTGGTTG---CTCAG---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- AAAAG----TTTAATGCCTGAACTGATCCTGATACAGTGGCTTGGAAATATATG >Myotis_myotis TTGTTGAAACCAAGGAGCAGTATCTAG--TCCCAATGCCAAGCAAGTCCTTTGCCTAC---TTGGGTA---CTCTG---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- AAAAA----TTTCATAAACAAA--TACACTGTTACCGTGACCAGGAAATATACG >Rousettus_aegyptiacus TTGTTGAAACCGAGGAGCAGGATCTAGG-ACCCAATACTAAGCAAGTCTTTTGCCCAC---CT-GGCG---CTCGG---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- AAAAA----TTTAATGAACAAA--CATCCTGTTATAGTGGCTACGAAATATATG >Condylura_cristata TTATTGGAGTCAAAGACTAGGGTTGATG-TCTCAATACTAAGCAAGCCAGAATCCTATATACTGGGGA---CTCTG---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- AAAAA----TTCAATTAATGAAATCATCCTGATATGATGGCCAGAAACT--ATG >Erinaceus_europaeus TTGTTTCAGGTAAGTAGCTGCATCTTGG-CCCCAAAACCAAGCATATCTTTTGTAC-----TTGGGTG---CTCTG---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- AAAAAAAAATGTGATGCTCATGATTATTCTGACATGAACGTAACAAAATACATG >Homo_sapiens TTGCTGAAACCAAGGAGCAGAAACTAGG-CCCCAGTGCCAAGCAATTCTTTAGCCCACT--TTGGGTG---CTCAG---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- AAAAA----TTCAATAAAAGAACTTATCCCAATAGGATGGCCAGGAAAAATATG Dog60_LTR >CARLTR7 --------------------------------------------------------------------TGTCGGGG-AGC AAGAATT---CCTGTCCCCTTCAAGGTCCTTCTAGCTGGACT-AAGAATCAAATTGACATGAGACAGATTAACA------ ---------GGAGAAAATCAAATTTAATAGCGTACGTACGGGGAATCCACACAGACATGGAAATTCCAAAGACAGTCAGG CAAAATGAGGTNTATATGTCATCCTGAACTAAGGAGAAGGGGGTAGGGGTCTGGGACTTCAGA------GGAAAGG---- AATGCANTTCACAGGGCGATAAGAAGAGCAGATGTTTGGTAATTAGATGTTTGCCCTGCCATACAGATGGGTCACTCA-- ----------GATAAAATTTATCTC-------TGCTA--ATAACCCTTATTCTGGGAAAGAC-CC---CCAATTTAGATT CTTCTATGTAGTTAAGGGAGGGGC-AAAAGTTTCTCTTGAGCCCGCAGGGTCTCGATTGCCTTCAGCTCAAAATAATCTT CATGCCAAAGTGGCCCATCTTGGGGCGGCCTGCCCTCGGCCCCTACA--------------------------------- --------------------------- >Canis_familiaris CCTTTGTATCCATATCATCTTGGTTTTCAAACAGCCATGCTTTT-ATATTATCATTTG---ACAC---TATAATGGCAGA TACATTTTCCCTTCTTCTCTTCTAGGTTCTT-GAACTGACCT-AATAACTAAATTGACATAAGACAAATTGACA------ ---------GGAAAAAAATAAATTTAATTTTGTATATAC-AAGAACC-CCAAAGATATGAGA--CTCAATAGCAGTCAGA G-AACTAAGGCTTAGATGCCTCCCCGAGCTAGGGAAT--GAGAT-GGGGCATGGGGCTTCCAAGTATGGGGGGGAGGGTA GGGGCAACTCACAGAAAGATAACAAGAGCTGATGTTTGGTAATCAGATGTTTGTCCTGCCATGCAGATAAGTCTTTCAGA T-------AAAAAATAAGTTATCTC-------TGGTA--ATAGCTGTCTTTCTGGGCCAGGGCCC---CCTATCTAAATT CTCTAAGGCAGTTAAGGGATAGGT-AAAAGTTTTTCTTGAGTCTGCTGGCTTTTGGCTGCCTTCCACTCAAAGCAATCCA CATACTAAAGTGGTCCCTTTCAGGGGGGCGTGCTCTGCTTCCGTGCA---ACAC---CAAACACTACTTTTCCTTGTCGG TCACAACTCAGCTTACAGAATGAGTAT >Felis_catus CTTTTGTGTCCATATTATTTTGGTTTTCAAGCAGCCATACCTTT-ATATTATCATTTG---ACAG---TATAG------- --------------------TCTAGGTTCCT-TGGCTGGTCTAAATAATTAAGTCAACATAAAACAAGTTAACAACAACA ACAACAACCAAAAAAACCTAAATGTAATTCTGTACAAAC-AAAACCCTCCAAAGATATGAGA--CTCAGTGGCAGTCAGA G-AATTGAGGCTTATGTGCCATCCTGAGCTAAGGAAT--GTGCTAGGGGTCTGGGGCTTCCAAGTGTGTATGGAGG---- GGGGCAACTCACAGGAAGATAACAAGAGCCCATGTTCAGTAATCAGATGTTTTCCCTGCCATGCAGGTAGGTCTTTCA-- --------AGAAAAAATGCTATCTC-------TGGTA--ATAGCTCTCTTTCTGAGCCCGGA-CG---CCTATCTAAATT CTTTAAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNN---NNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNN >Manis_javanica CTTTTATATCCCTGCCATCTTGGTTTTTAAGCAACCATATTTTT-ATATTACCTTATG---ACAC---TAGAGGGACGGA AAAAAATTTCTCTTCCTCCCCTTTAGGTCCTTTGGCTGGTCT-AATAATTAAGTTGACATACAACAGAGTAACA------ ---------GGAGAAAAACAAATTTAATTTTGTATGTAT-GAGAGCC------------------TCACAGGCAGTCAGG C-AGTTGAGGAACGCACACCATCCTGAGCTAAGGAAT-GGGATTAGAGGTCTGG-GCTTCAGA------GGGCAG----- AAGGTGATTCACAGGAAGATAACCAGAGTGGACTTGGGGTAATCAGATGTTTTCCCTGCCATGTGGGTAAGTCTTTCAGA TTTTTAAAAAAAAAATGGTTTTCTC-------TGGTAATATAGCTCTCTTCCTAGGCCAGG--CCTTATCTATCTAAATT CTTTTAAGCAGTTAAGACAGAGGC-AAAAGATTTTCCTGAGTCTCCTGGGACTTGATTGCCTTCAGCTCAAAATATTTCA CATGCCAAAGTGGCACATTTTGGGGTAGCATATTCTGCTCTCCTTTG---ACAC---CAAATATTACTTTTCCTTATTTA TTACTGCTAAACTCCAAGAATGGGTAC >Equus_caballus CTTTTGTATCCGTACCATCTTGGTTTTCAAGAAGCCACTCTTTC-ATATTATCATTTG---ACAC---TGTTGGGGCAGA -AAATTTTCCCTTCTTCTCTTCCAAGTTCTT-TGGCTGGTCT-AATAATTAAATTGACATAAGACAGATTAACA------ ---------AGAGAAAAACAAATTTAATTTCATACATAC-AGGAGCC-CCAAAGGCATGAGA--CTCAAAGGCAGTCAGG C-CGTTGAGGCTTGGATGCCATCCTGAGCCAAGGAGAAGGGGGTAGGGGCCTGGGGCTTCAAA------GGGGAGG---- AAGGCAGTTCACAGGAAGACAGCAAGAGCAG-TGCTGGATAGTCAGATGTTGGCCCTGCTGGGTAAGTAAGTTTTTCA-- ---------GGTAAAAAGTTATCTCTCTTTCTTTCTG--ATAGCTCTCTTTCTGGGTCAGG--CC---CCTATCTGAACT CTTTTAGGCAGTTAAGGGAGAGGT-AAAAA--CTTCCTGAGTTTGCTGGATCTTGATTGCCTTCAGCTCAAAACAATCCA CATGCCAAAGT-GCACATTCTGGGGTGGCACATTCTGCCCCCTCA-----ACAC---CAAATACCACTTTTCCTTACAGA TCATAGCTAAATTTCTGGAGTGGGTGC >Ceratotherium_simum CTTTTGTATCCGTACCATCTTGGTTTTCAAGAAGCCACACTTTT-ATATTACCATTTG---ACAC---TGTAGGGGCAGA -AAATTTTCCCTTCTACCCTTCCAGGTTCTT-TGGCTGGTCT-AATAATTAAATTGACATAAGATAGATTAACA------ ---------GGAGAAAAACAAATTTAATTCCATACATAC-AGAAGCC-CCAAAGATATGAGA--TGCAAAAGCAGTCAGG C-AGTTGATGCTTAGATGCCGTCCTGAACTAAGGAGA-------AGGGGCCTGGGGCTTCAAA------GAGGAGG---- AAGACAATTCACAGGAAGATGAGATGAGCAGATGTTTGGTAAACAGATGTTGGCCCTGCCATGTAAGTCAGTCTTTCA-- ---------GGTAAAAAGTTATCTC-------TGGGA--ACAGCTCTCTTTCTGGGCCAGG--CC---CCTATCTGAATT CTTTCAGGCAGTTAAGGAGGAGGTAAAAAGCTCTTCCTGAGTCTGCTGGGTCTTGA------------------------ -GTGCCAAAGTGGCACGTTCTGGGGT-GTATATTCTGCTCG---------ACAC---CAACTACCACTTTTCCTTACAGA TCATAGCTAGATTTCCGGAACAGGTGC >Myotis_myotis CTAT----ACTATACTATCTTGGTTTTCAAGCAACCATGTTTTTGACATTATCATTTG---ACAC---TGTAGGGACTCC AGAATTTCCCCCTTCTCACCTTCAGGT-------------CT-AATAATTATACCGACATAAAATAGATTAACA------ ---------GAAGAAAAACAAATTTAATTTCTTTTGTAT-AGGAGCC-CCCAAAATATGAGA--CTCAAAGACA-TCGGG C-AATTGAGGCTTAGATGCCATCCTGAGCTAA--------------------GATGCTTCAAAA-----GGGGAGG---- CGGGCAGTTCACAGA---ACAAGAAGAGCAGATGTTTGGTAATGAGATGCTACCCCTGCCATGCAGGTAAGTGTTTCA-- -----------GACAAGGCTACCTG-------TGGTA--ATCGCTCTCTTTCTGGGCCAGTC-CC---CCTCTCTAAATT CTTTTAGGCAGTTCAAG---------------------GGGTCTGTTGGCACTTGATTGCCTTCAGTGCAAAATAATCCA CATGCCAAAGTGGCACATTTAGGGACCGCCTAGCCAGCTCCCCTTCA---ACGC---CAAACACTGCTTTTTCTTACTTA TCACGGGGAAACTTCTACTATGGGTTT >Rousettus_aegyptiacus CTTTTGTAGCCGAACCATCTTGGTTTTTAAGCAGCTATACTTCT-ACATTATCATTTG---ACAC---TGTAGAGGCAGA AGAATTTTCTGTTCTTCCCTTTTAGGTTATT-TGGCTGGTCT-AATAACTAAATTAACAGAAGACAAATTAATA------ ---------GGAGAAAAACAAATTTAATTTCTTATGTAT-GGGAACC-CCACAGATA--AGA--TTCTAAAGCGGTCAGG C-AATTGAGGCTTACATACCATCCTGAGCTAAGCAAT--GGAATAAAGGCCAGGAGCTTCAAA------GGTGGGG---- AGGGCAATTTGCAGGAAAATAACAAGAGCAGGTGCTTGGTAATCAAATGTTTG-CCTGGCATGCAGGTAAGTCTTTCA-- --------GAAAAAAAAGTTATCTC-------TGGGA--GCAGCTCTGATTCTAGGCATGCT-CC---CTTATCTAAATT CTTTTAGACAGTTAAGGGACAGGT-TAAAGGTTTTCCTAAGTCTGCTGG-TCTTGGTTGCCTTCAGCTCAAAATAATCCA CATGCCAAAGTGGTACATTTTGGGGCAGCCTATCCTGCTCCTCTTCA---ACAC---CAAGTATGACTTTGTCTTATTTA TCATGGCTAAACTTCTGAAATGGGTGT >Sus_scrofa CTTTTGTATTTGTGCCATCTTGGTTTTCATTGTGCCACACTTTT-ATATTATGATTTG---ACAC--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------CAAACACTGCTTTTCCTTATTTG CCATGGCTAAACTTGCAGAG-GGGTGC >Bos_taurus TTTTTGTATTTTTGCCATGTTGGTTTTCAAGCTGCTATACTTTT-ATATTATTATTTG---ACAG--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------CAAACACTACTTTTCCTAATTTG TCATGGCTAAATTTCTGAAAAGTGTGC >Condylura_cristata CTTTTACATTCATGCCATCTTGGTTTCCA-GCAGTCATGTTTTT-ATATTATCACTTA---ACAT--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------CAAATAT--CTTTCCTTTCCTTA TCACAATGAAATTTCTAGAGTGGCTGC >Erinaceus_europaeus CTTT-GGATGCATGCTATCTTGGTTTATGAGCACATGTGTTTTC-ATGTTATCATTTG---ACAC--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------CAAATAATACTTTTTCCTATTTA TCATGG-TAAACTTTTGTAATGGGTGC >Homo_sapiens CTTTTGTAGTTACAGCATCTTGGTTTTCAAGCTGCCATTATTTT-TTATTATCATTAG---ACAC--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------CACATCCTACTTTTCTTTCTTTA TCACAGCTCAACTTCTGGAATGGGTAT Dog62_LINE >L1MA9_3END -------------------------------------------------------------------------------- ------------TTTTTCCA-----GCTTTATTGAGGTATAATTGACAAATAAAAATTG--TATA-TATTTAAGGTGTAC AACGTGATGTTTTGATATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATA GTTACCA---TTTTTTTGTGTGTGGTGAGAAC------------------------------------------------ -------------------------------------------------------------------------------- ------------------ACTTAAGATC---TACTCTCTTAGCAAATTTCAAGTATACAATACAGTATTATTAACTATAG TCACCATGCTGTACATTAGATCTCCAGAACTTATTCATCCTGCATAACTGAAACTTTGTA-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------- >Canis_familiaris AGAAGATTCAGTTTAGCACCTGGCTCTTTGTCATC--CCGTCTTGACC------------------------TCTA---A TGGTTT---A---------------TTTTTACTGAGGTATAGTTGACATAT-AACATTA--TATT-AGTTTCAGGTGCGC AACACAATGATTTGATACTTAGATATATTGCAAAGTGATCACCACAGTAAGTCTGATTAACTATACTGTTACTATACTGA GTTACAAAA-TCTTTTTTCTTGTGATAAGAAC------------------------------------------------ -------------------------------------------------------------------------------- ------------------TTTTAAGATC---TACTTTCTTACCAATTTTTAAATATGCAACACAGTATTATTAACTGTAG TCACTGTGCTGTACATTTCAT----------------------GTGATTGCAAGTTTGTAAAGTCAAATGAA---CTG-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------ATCGTCT---TTAACT-T ATGTACATATTTATCTGTGAAACT-GTAAAATGTTTGAGGGAGGGG >Felis_catus AGGAAATTCAGTTTAGTACCTGGTTTTTTGTCACC--CTATCTTGACC------------------------TCTA---A TGGTTT---ATATTATTTTA--------TTTTTGAGGTATAATTGACTTAT--ATATTAGTCATT-AGTTTCAGGTGTAT AAGATAATGATTCAATATTCACATGTATTGCAAAATGATCACCCCAGTAAGTCTAATAAAT--ATCTGTCACCATACACA GTTACAAA--TTTTTTTTCTT---ATAAGAAC------------------------------------------------ -------------------------------------------------------------------------------- ------------------TTTTAAAATC---TACTCTTTTAACAATTTTCAAGTATGCAATACAGTATTATTAACTATAG TTACTATTCTGTATGTTTCTT----------------------GTGATTACATGTTTGTAAAGTAATGTAAA---CTC-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------ATGGTTT---TTAACTAT GTGTATAGATTCATCTGTGAAACT-GTGAATTATTTTAGGGGAGGG >Manis_pentadactyla ATAAGATTCATTTTGGCATTTGGCTCTTTTTTATC--CTTTCTTGATT------------------------GCTA---A TGGTT----A-TTTATTTTA------TTTTATATAAGTATAATTGACATGT-AACACTA--TATT-AATTTCAGGTGTAC AACATAGTGATCGATTATCTGCATATATTGCAACATGATCACCACAATATGTCTAGTTAAC--ATTCATCACCAAAAATA GTTA------GTTTTTTCCTTGTGATGAGAAC------------------------------------------------ -------------------------------------------------------------------------------- ------------------TTTTAAGATC---TACTTTTTTAGCAACTTTCAAATATGCAATACAATATTATTAACTATAG TCACCATGTTGTACATTACAT----------------------GTGATTACATGTAAATG---------------CCA-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------ATGGCTT---TTAACTAT AATTACAAATTCGTCTGTGAAACT-GTAAATTGTTTGAGGGAAGGG >Sus_scrofa GCAAGATTCAGTTTAGCACTTGGGTCTTTGTTGTT--CTATCTTGATC------------------------TCTA---A TGGTCT---ATTTTATTTTATTATTTTTTAATTGAGGTATAATTGATATAT-AACATTA--TATTAAGTTTCAGGTATGT AACCTAATGATTTGATATTTGTATACATTGCAAAATAATCACCACAGTAAGTCTAGTTAAC--ATCTGTGTTCATATATA GTTACAAAACTTTTTTTTCTTGTGATGAAAAC------------------------------------------------ -------------------------------------------------------------------------------- ------------------TTTTAAGATATAGTACTCTTTTAGCAACTTTCAAATATACAA-----TATTGTTAACTAT-- -CACCATGCTGTACATTACAT----------------------GTAATTACATGTAAAGA---------------CTATT TTTTTTTCTCATCTTTTTAGGCTGCACCTGTGGCATATGGAAGTTCCCAGGCTAGGGGTTGAATTGGACCCCAGCCTATG CCACAGCCCGGCCCCTACCCCACAGCTCATGGGAATGCTGGATCCTTAACCCACTGAGCAAGGCCAGGGGTTGAACCTGC ATCCTCATGGATGCTAGTTGGGTCCATTACCACTGAGCTACGACAGGAAAGTTTAAAGGCTAATGGTTT---TTAACTAT AAGTACACATTCATCTGTGAAACT-GTAA-TTGTTTGAAAGAAGGG >Bos_taurus GTAAGAAACAGGATAGCACTTGGCTGTTTGTTGTT--CTATCTTGATA------------------------TCTA---A TGGTTT---A-TTTATTTTATTATGTTTTTATTGTGTTATAATTGACATAT-AACATTA--TATT-AGCATCAGGTGTAT AACATAATGATTCAATATTTGTATGTATTGCAAAATGATCACCACAGTAAGTCTAATTCAC--ATTCATCTTCATAC--A GTTACAGAACATTTTTTTCTTGTGATGAGAATTTTTTAAGATCTACTCTTGGGACTTCCCTGGCAGTCCAATGGTTAGGG CTCTATACTTCTACTGCAAGGGGGCACAGATCCGATTCCTGCTTGGGGAACAAAGATCCTGCATGTCTCAAGGCATGGCC AAAAAAAAAAAAAAAAAATTTTAAGATC---TACTTTCTTAGCAACTTTCAAATATACAATACAGTATCATTAATTATTA CCA-TATGCTGCACATTACAT----------------------GTAATTACATGTTAAAGA--------------CTA-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------ATGGTTT---TTAACTAT ATGTTCCTATTCATCTGTGAAACT-GTAAGTTGTCCAAAGGAGGGG >Equus_caballus GTAAGATTCAGTTTAGCACTTGGCTGTTTGTTGTC--CTGTCTTGGTC------------------------TCTA---A TGGTTT-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------TTAACTAT GTGTATGGATTCATCTGTAAAACT-GTAAATTCTTTGAGGGACAGG >Ceratotherium_simum GTAAGATTAAATTTAGCATTTGGCTCTTTGGTGTC--CTGTCTTGGTC------------------------TCTA---A TGGTTT-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------TTAACTAT ATTTACAGATTCATCTGTAAAACT-GCATATTGTTTGAGGGA-GGG >Myotis_myotis ATAAGTTTTAATTTAGCCCTTGGCTCTTTGTTGTC--CTATCTGGATC------------------------TCTA---G TGGTTT-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------TTA-CTAT ACATTCTCA--CATCTGTGAAATTGGTAATTTGTTTGAGGGA-GGG >Rousettus_aegyptiacus ATAAG------TTTAGCACTTGGCTCTTTGTTGAC--CTATCTTGATC------------------------TCTA---A TGGTTT-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------TTAACATT ACTTTTTCA--CATCTATGAGTTC-TTAAATAGTTTGAGGAAAGAG >Condylura_cristata ATCAAACTCAATTTAGTGCTTGGCTCTCTGTTGTC--CTATCATG---------------------------TCTA---C TGGTTT-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------TTA-ATAT AAGGACAGTTTTTTCTGTGAAACT-GTACATTGTTTGAGGGAAAGG >Solenodon_paradoxus ATAAAATTCACTTTCACACTTGGATTTTTGTTGTC--CTGTCTTGATC------------------------TCTG---A TGGATG-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------TTAACTAT A----CACATTCATCTGTGAAACT-GTAAATTGTTTTATCATGGGG >Homo_sapiens ATAAGATTCAGCTTATCACTTGGCTCATTGTTGTTCTCTGT--TGATCGCAACATGTACGGATTCTATATGTACAA---A TG--TT-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------TTAGCCAT AGGTACAGATTCATCTGTGAAACT-GTAAATTGCTTGAGGAAAGCA Dog77_LTR >MLT1A0 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------TGCTATGGTCT GAATGTT-TGTGTCCCCCCAA-------AATTCATATGTTGAAA-----CCTAATCCCCAATGTGATGGTATTAGGA-GG TGGGGCCTTTGGGAGGTGATTAGGTCATGAGGGCGGAGCCCTCATGAATGGGA-TTAGTGCCCTTAT-AAAAGAGACCYC AG-AGAGCTCCCTTGCCCCTTCCGCCATGTGAGGACACAGTGAGA----AGGCGCCGTCTATGAACCAGGAAATGGGCCC TCACCAGACACTGAATCTGCCGGCGCCTTGATCTTGGACTTCCCAGCCTCCAG--------------AACTGTGAGAAAT -AAATTTCTGTTGTTTATAAGCTACCCAGTCTATGGTATTTTGTTATAGCAGCCCGAACAGACTAAGACA---------- -------------------------------------------------------------------------------- ------------------------------------------------------------