Supplementary File S1
Alignments of 367 retrotransposon markers for Laurasiatheria interordinal relationships


Bat8_LINE

>L1MA9_3END
-------------------------------------------------------------------------------A
AGTGTTCTCACCACACACAAAAAAATGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTT
CACAATGTATACGTATA--------------------------------------------TCAAAACATCACGTTGTAC
ACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA------------------------
----------------------------------------------------------------------
>Sus_scrofa
CAAA-TAAATGCTCAACT-AGATACACTTTTGCAAATTGCGATAAGTG------CACT---AAAAAAAAAAAGAAA----
-------TCATCATAAGAAAA--AATCATAACCATGTGAGATGATAG--ATATTAACTACATTTATTGTCATAATCATTT
TGCAATATATATATATTTATATTTGCAATATATGTATACTTACATACAATATATACTTGTATTAAATCATTGTGTTGTAT
GCTTTAAACCAACATAA-GGTTAGGGGTTAATTATATCTCAATACAACTGGAAAAAAGAAGAAAATAGGTA---AAAGTA
A----AAGAG---GATGCTCATAT----TCTTGC--ATGAAATCGAAATGTGCTT-AGAGAAACACTGAT
>Tursiops_truncatus
CAAA-TAAATGCTCAACT-AAATATACTTTTGCAAATTGTGAGGAGTG------CACT---ACAGAAAAAGATGAA----
-------TCATCACAAGAAAAAAAGTTGTAACCATGTGAGGTGATGG--ATGTTAACTGCATTTACTGTGGTAATCATTT
TGTAATATATACTTGTG--------------------------------------------TCAAGTCATTATGTTTTAC
ACCTTAAACTAATGCAA-GGTTATATGTCAATTGTATCTCAATAAAGCTGGAAAAAAAG------AAGAAA---AAAGTA
AAAAAAGGAG---GATGCTTATAT----TCTTGC--ATGGAATCTAAATATGTTT-AGAAAAACACTGAT
>Myotis_myotis
CAAA-TAAATGCTCAGCT-AAATATGCTTTTGTAAATTGTGATAAGTT------CACT---AAAGG--AAGAAGAG----
-------TCATTACAAGAAAAA-AATTATCACTATGTGAGGTGATGG--ATGTTAATTACATTTATTGTTGTGATCATTT
TGCCATATGTACATATA--------------------------------------------GCAAATCAT--TGTTATAT
ACCTTAAACTAGCACAA-TATTACATGTTCATTATATCCCAATAAAACTGGAAGAAAAATTT----AAAAA---AAAGTA
AAAG-AAGAG---GATGCTTATAT----TCTTGC--ATGAAAT--AAATATGCTT-AGGGGAATGATGGT
>Rousettus_aegyptiacus
CAAA-TAAATGCT--GTT-AAATACGCTTTTACAAACTGTAATAAGTG------CACT---AAAGGAAAAGAAGAG----
-------TCATCACAAGAAAAATAGTTGTCACTCTGTGAGGTGATGG--ATGTTAACTACATTTATCGTGGTGATCATTT
TGCAGTATATACAGATATT------------------------------------------TCGAATCATTATGTTGTAC
ACGTTAAACTAATACAA-TGTCATATGTCACCTTTACATCAATAAAACTGGGGAA------AAGGGAAAAA---TAAGTA
A----AAGAG---GAGGCTCCTAT----TGTTGC--ATGGAATCTAAATATGTTT-AGAAGAATGCTGGT
>Condylura_cristata
CAAA-TATACCCTCAAGTAAAAAATGCAAATGTAAAGTGTGATAGAAGATTCATCACA---AAGAA-----AAAAG----
--------------------------------------------------------------------------------
-------------------------------------------------------------TTAA---------------
--------------------------------------TCAATAGAACTGGGGGA----------TGGGAA---AAAGTA
A----AAGAA---GATGCTTATAT----CCTTGC--ATGGAATCTAGATGTGTTTAAAAAAAATGCTGGT
>Erinaceus_europaeus
CACATTAAAAACTTAACT-AAATATATTTTTGTAAATTATGATGAGCG------CATG---AAAGA-----AGAAT----
-----------CCTAAGAAGAAAAAT-----CTATAGGAGATGATGG-----ATGATTACATTTCTTTTTATAATTATTT
TGTTACATATA--------------------------------------------------TCAAATTGT-ATGTTGCAT
ATTTTACACTGATACAA-TGTTTTGTGTCAATTATATCTCAATGAAACTGGGAGA----------AGGAAA---GGAGTA
A----AATAG---GACACTTCTATCTACTTTAGC--ATGGAATCAGAATATATTT-AGAAGAATACTGAT
>Canis_familiaris
CAAA-TAAGTGCTCAACT-AACTATGCTTCTGCAAACTGTGGTAAGTG------CACT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------AAAGGA
AAAG-AAGAG---GCTCCTCATAT----TCTTGAATATGGAATCTAAAT--GTTT-AGAAGAACACTAAT
>Felis_catus
CAAA-TAAATGCTC-ACT-AAATATGCTTTTGTAAACTGTGGTAAGTG------CACT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------GAAG--
-AAG-AAGAG---GCTTTTCATAT----TCTTGCATATGGAATCTAAAT--GTTT-AGAAGA---CTAAT
>Manis_pentadactyla
TGAA-GAAATGCTCAGCT-ATGTATGCTTTTGCAAATTATGATAAGTG------CACT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------AAAGAA
AATG-AAGAG---GATGCTCATAT----TCTTGC--ACAGAATCTAAATATGTTT-AGAGGAACGCTGAT
>Equus_caballus
CAAA-TAAACACTCAACT-AAATATGCTTTTGCAGACTGTGGCAAGTT------TACT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------AAAGAA
AAAG-AAGAT---AAGGCTCATAT----TCTTGC--ATGGAATCTAAATGCATTT-AGAGTCACGCTGAT
>Ceratotherium_simum
CACA-CAAATGCTCAACT-AAATATGCTTTTGTAAATTGTGGCAAGTG------CATT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------AAAGAA
AAAG-GAGAG---AATGCTCATAT----TCTTGC--ATGGAATCTAAATGCGTTT-AGAGGAACACTGAT
>Homo_sapiens
CAAA---------CACTC-AAATACACTTTTGCAAATTATGATAAGTG------CACT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------AAAGAA
AAAG-AAGAG---AATGCTCATAT----TCTTGC--ATGCAGTCTAAGTGTA-TA-AGAGGAATACTGGT



Bat33_LTR

>ERV54-EC_LTR
---------------------------------------------------------------TGTT-AAAAACAAGACA
ACAGGCC---CAAAATGGAGTCACTTATGCTAAGCCCCACGTCACCAAACCGAGACTTAACTTAATTACAGTTTCGGCTC
TCCCAGAAATGGAATCTTAAACCAGTCAATCAGGAATCACCTGATC--AGCACTAG-TTAGGTAATCTGCCTGATAGACC
CCTGCCATCCCCTA-AAGGAAAGTAACCTTGCAATAACCAATCCAC-----------TTTTTTGC---------------
-CTAGTATAACTTCCTTGTTCCTGCTCCCTTCTGCCTATAAAAGTCT-TTCATTTTGTACAGCTCCTCGGAGCTCCTTTC
TATCTGCTAGATTGGATGCTGCCCAATTCATGAATCATTGAATAAAGCCAATAAGATCTTTAAAATTTACTCAGTTGAA-
---TTTTGTTTTTTAACA--------------------------------------------------------------
------------------------------------------------
>Canis_familiaris
TGTGACAC-AACCACATTTTTAGA-TTCTCTCAC-TACTCATATATTTTAAAA---GCAT---TGTTGAAAAACCAGACA
GTAGGCC---CAAAATGGAGTCACTTATGCCAAGCC-CACATCTTTACCCCAAAACTTAA-TT------AGTTTCAGCTC
TCTCAGACTTGGAATCCTAAACCAGGCAATTAGGAGTCATCTGATC--AGCATTAG-TTAAATAATCTTCCTGATAAATG
TCTACCATACCCC--AAAGGAAAATACCCTGCAATAACTAATTGCCT-----------TCTTTGC---------------
--CTGTACAACTCCCCTGTTTCTGCTCCCCTCTACTTATAAAA-TCCTTTGCCTTGCATTAGCTCTTTGGAG---CTTTC
TGTATGTTAGATTGGATGTTGCTCAATTCAAGAATTTCTGAATAAAGCCAGTAAGATCTTAAACTTT-ACTTATTTGAT-
----TTCTCCTTTGAATA---GCAC---TATGCTGTTTTGTTGTTGT--TTTGTTTGCGTTTTGTTTTTGCT--------
--TTTGTTTTTTT-AAGCACATGAGATGTTCTTAGGATTGTTGTAATT
>Lynx_canadensis
CATGATGC-AACCACATTTTTAGG-TTTTCTCTCACTACTATATA-TTTAAAA---GCAC---TTTT-CAAAACCAGACA
GTAGACC---CAGAATGGAGTCACTTATGCTAAGCC-TACATCTTCAAACCTAAACTT-----AAGTACAATTTCAGCTC
TCTCAGAAATGGA-TCTTAAACAAGTCAGTCAGGAATCATCTCATCTAATCATCAGATCATCTCATCTGTCTGATACACC
TCTCCCATGCCCTA-AAGGAAAGTAACCTTGCAATAACTAATCACCT-----------TTTTTGC---------------
-CTAGTACAACTTCCCTGTTTCTGTTACCTTCTGTTTATAAAA-TCTCTT-GCCTTGTATAGCTCTTTGGAGTTCCTTTC
TATCTGTTAGATTTGATGTTGCCTGATTCATGAATTGCTGAAGAAAGCCAGTAAGATCTTAAAATT--ACTTAATTGAT-
----TTCTTTTTTTAACA---GCAC---TATGGTGTTTTGTTATTGTTATTTGTTTGTGT------TTTGCT--------
--TTTGTTTTTTT-AAGCACATGAGATGTTCTTAAGATTATTGTGATA
>Manis_pentadactyla
CATGATGC-AACCAAATTTCCAGA-TTTTCTCAC-TTATCATATA-TTTAAAA---ACAC---TGTT-AAAAACAAGACA
ACAGGCA---CAAAATGTAGTTGCTTATGCCAAGCCCCATGTCACCAAACCAAGACTT-----------AGTTTTGACTC
TCCCAGAAATAGAAATTTAAGCCAGTTAGTCAGGAATCACCAGATC--AGCATTAG-TTGGGTAATCTGTCCGATAAACA
CTTGCCATCCACTA-AAGGAAAGTAACATTGCAACAACTGATCTGCTTTAAAATTTATTTTTTGC---------------
-CTACTACATCATCCTTGTTTCTGCTCCCTTCTGCCTACAGAA-TCTCTT-GTCTTGGATAGCTTTTCAGAGTTCCTTTC
TGTCTGCTAGATTAGATGCTGCCCATTTCATGAATCACTGAATAAAACCAGTAAGATTTTAAAATTTAATTCAGTTGAA-
--TTTTGTTTTTTTAACA---ACAC---TCG--------------------------------------GCT--------
----GTTTTTTTTAAAGCACATGAGATGTTTTTAAGACTGTTGCAATA
>Sus_scrofa
CATGATGC-AACCAAATTTCCAGA-TTTTCTTGC-TTCTCAAATA-TTTAAAA---GCAC---TGTT-AAAAACAAGAAA
ATGTGCTAAAAAAAATGGAGCCATTTATGCTAAGCCCCATGTCAGCCAACTGACACTT-----AGTTACAGTTTTACCTC
TACCAGAAAGGGAATATTGAACCAGTCAATCAGGAGTCATCTGATC--AGCACTAG-TTAGGTCATCTGCCTGATAAACC
CCTGCTATCCC---TACAGGAAGTAAACTTGCAAGAGCCAAGCCCCCTC---------TCCTTGCCCCCCACCCTTTTCC
TCCAATATAACCTTCCTGTTCGAGCTTCCCTCTGCCTGTAAAA-ACTCTTGCCTTTATATGGTTCTTTGAAGCTCCTTTC
TGTGTGCTGGATGGGATGCTGCCTAATTTATGAATCACTGAATATAGCCAATAAGGTCTTAAAAATTCACTCAGTTGAA-
-TTTTTTTTTTTTAAAGC---GCAT---TCTGGGTTTGTTTTTTCTTTCCTTT-------------TTTTCT--------
--TTTTTTTTTTT---GCACATGAGATGTTTTTAAGATCATTGCAATA
>Tursiops_truncatus
CATGATGC-AAACACATTTCCAGA-TTGTCTTAC-TTCTCAAATA-TTTAAAA---GCGC---TATT-AAAAACAAAACA
ACAGGCC---CAAAATGGAGTCATTTATGCTAAGCCCGATGTCACCAAACTGAGACTT-----ACTTACAGTTTTGCTTT
TCCCAGAAATGGAATATTAAACCACTTGATCAGGAATCATCAG-------CGTTAG-TTAGGTAATCTGCCTGATAAACC
CCTGCTATCCC---TAAAGGAAGTAACCTTGCAAGAACCAATCTGCTC----------TTTTCGC---------------
-CCAGTGCAACCTCCCTGTTCCTGCTCCCTTCGGTCTATAAAA-TCTCTTGACTTT-TATAGCTCTCTGAAGCTCCTTTC
TGTCTGCTAGATGGGATGCTGCCTGATTCATGAATTGCTGAATAAAGCCAATAACATGTTAAAACTT-ACTCAGTTGAA-
--TTTTGCTTTTTTAACA---GCAC---TAT--------------------------------------GGT--------
-----GTTTTTTAAAAGCACGTGAGATGTTTTTAAGATTGTTGTAATA
>Equus_caballus
CATGATGC-AACCGAATTTTCAGA-TTTTCTCAC-TTCTCATATA-TTTAAAA---GCAC---TGTT-AAAAACAAGACA
ACAGGCA---GAAAATGGAGTTGCTTATGCTAAGCTGCACGTCACCAAACTAAGAC-------GATTATAGTTTCGGCTT
TCCCAGAAATGGAATCTTAA------------------ATCTGATT--GGCATTAG-TTAGGTAATCTGCCTGATGAACC
CATACCATCCTCTATAAGGAAAGTAACCTTTCAATAACCAATCCACTTT---------TTTTGGC---------------
-CTAGTACAAATTCCTTATTCCTGCTCCCTTCTGCCTATAAAA-ATCTCTTGCCTTGTATAGCTCTTCAGAGCTCCTTTT
TATCTACTAGATTGGATGCTGCCTGATTTATGAATTGTTGAATAAAGCCAACAAGATCTTAAAATTT-ATTCAGTTGATT
TTTTTTTTCTTTTTAACA---GTAC---TAT--------------------------------------GCT------TT
TTTTTTTTTTTTTAAAGCACATGAGATGTTCTTAAAATTGTTGCAATA
>Ceratotherium_simum
CATGATGT-AACCAAATTTTCAGA-TCTTCTCAC-TTCTCATACA-TTTAAAA---GCAC---TGTT-GAAAGCAAGACA
ATAGGCC---CAAAATGGAGTCACTTATGCTAAGCCGCACATCACCAAACTGAGAC-------AATTACAGTTTTGGCTT
TCCCAGAAATGGAATCTTAAGCCAGTCAATCAGGAATCACCTGATT--AGCATTAG-TTAGGTAATCTACCTGAAAAACC
CCTGCCATCCCCTATGAGGAAAGTAACCTTTCGATAACCAATCCGCTTT---------TTTTGAC---------------
-CTAGTACAACTTCCTTGGTCCTCCCCGCTTCTGCCTAT---------CTTGCATTGTATAGCTCTTCAGAGCTCCTTTC
TATCTACTAGATTGGATGTGGATTGATTTATGAATTGCTGAATAAAGCCAACAAGATCTTAAAATTT-ACTCAGTTGAA-
----TTTTTTTTTTAACA---GTAC---CAT--------------------------------------GCT--------
-----GTTTTTTCAAAGCACATGAGATATTTTTAAGATTGTTGCAATA
>Myotis_myotis
TATGATAC-AACCAAATTTCCAGA-TTTTCTCAC-TTCTCATATA-TTTAAAA---GCCC---TTTT-GGAAACAAGACA
ACAGACC---CAAAATGGAGTCACTTATGCTAAGCTCTATG--ACCAAACCAAGACTT-----AATTACAGTCTCAGCTC
TCCCAGAAATGGATTCTTAAACCAGTTAATCACCAGTCACCTGGGT--AGTA-----TTAGGTAATGTTCCTGATAAGCA
CCTGCCATCCCTTA-AAGAAAAGTAACCTTACAATAGCAATCTGTTTTTG--------TTTTTGC---------------
-CTAGTAAATCTTCCTTGTTTCTTCTCTCTTCTGTGTATAAAA-TCTTTT-GCTTTATATAGCTCTTCAGAGATCCTTTC
TATCTGCTAGACTGG-TGCTACCCGATTCGTAAATGGCTGAATAAAGCCAATAAGATCTTAAAATTT-ACTCAGGTGAC-
------TTCTTTTTAACA---GCAC---TGT--------------------------------------GCTGGTTTTTG
TCTGTTTTGTTTTAAAGCATATGAGATGTTTTAAAGATTGTTACAATA
>Rousettus_aegyptiacus
TATGATGC-GACCGAATTTCCAAA-TTTTCTTAC-TTCTCATGTA-TTTAAAG---GCAC---TGTT-CAAAACAAGACA
ACAGTCC---CCCAATGGAGTCACTTATGCTAAGCCCCATGTTACCAAACTGAGACTT-----AATTACAGTTTCAGTTT
TCCAAGAAATGGAATCGTAAACCAGTCAATCACCAAGCACCTGATA--AG----TG-TTAGATAATCTGCCTGATAAACC
CTTACCATCCCCTAAAGCAACAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNN---NNNN---NNN--------------------------------------NNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>Condylura_cristata
TACGATGC-AACCAAATTTCCAGA-TTTTCTCAC-TTCTCATATA-TTTAAAA---GCAA--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------TAT--------------------------------------GCC--------
-----ATTTATTTAAAGCACATGAGATGTTTTTAAGATTGTTGCAAAA
>Sorex_araneus
CATGATGCAAACCAAGTTTTCAGATTTTTCTCAC-TTCTCATGTA-TTTAAAA---GCAC--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------TAT--------------------------------------GCC--------
-----ATTTATTTAAAGCATAAGAGATATTTTTAAGATTGTTGCAATA
>Heterocephalus_glaber
CACTACAT-AAGCAAATTTCCAGA-ATTTCTCAC-ATTTCATATA-TTCAAAA---GCAC--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------TAT--------------------------------------ACC--------
-----ATTTACTTAAAGCACATGAGATGTTTTTAAGATTGCTGCAATC



Bat34_LTR

>MER57LA
-------------------------------------------------------------T-GTTAAATTAATTAAACA
AGGAGGCCATTAGACTGAGGTGGTTCTAATGCCTTAGCAGCCTACGTAAGCAAACCAAA----ACCTAAGCCTGTAAATG
CCTCAAGG---------------------TTAAGAAATCAAAACCTAAG---GACAACCAATCACAAACAGCCAACTAGG
CTTTCCCAAATAAGGCAACTGCTTAAGCTATAGCCAATCAAATAATTTCCTTGCTTTGCTTCTGCCTCTTCTCTATAAAA
GTCTTTCCCCTAGCTCCTGTCGGTGGAGCGCTCC--TAACCACTTCCTGGTTTGGTGCTGCCTGATTTGAATCGATTTTT
GCTCAAATAAACTCTTAAAA-TTTTTAATATGCCTCAGTTT-ATC-TTTTAACACA------------------------
------------------------------------------------------
>Canis_familiaris
ACATGAGGTCTAAGATGCTTCTCCAGTTTGTGAGAATTACTTCAACATCT---GAACT---T-ATTAAATTAATTAAACA
ACAAA-----------------------------------CCTATATAAGCAAAGCAAA----CTCTAAGGCTGTAAATG
CCTCAAGG---------------------TTATAAAATTGAAACCTAAG---TATAACCTATCCTAAGAAGCAAACTAGG
CT--------------------TTAAACTA----CAATC-AATAGTTCCTTTACTTTGCTTCTGCCTTTTCTCTATAAAA
ATCTGT-CCCTAGCTGCTCTCCATGGAGTGTTCC--AAACCACTT-----TTTCATGCTG----ATTCAAATCAGTTTTT
GTCCAGATAAACTCCTAAAAATTTTTAACATGCCTCAGTTT-ATCTTTTTAAC----------------------AACCT
---CTAGGAGTTATGAACC-TTGCTCTCAAACTCAAGTGTGCAAGAAATGTCTT
>Felis_catus
ATAAGGGGTTTAAGATGCTTTTCCAGTTTGTGGGAATTGCTTCAACATTT---GACCT---T-GTTAAATTAATTAAACA
ACAAA-----------------------------------CCTACATAACCAAAGCAAA----ATCTAAGGCTGTAAATG
CCTCAAGG---------------------TTATAAAATTGAAACCTAAGTATAACAACCAATCCCAAACAGCAAACTAGG
CT--------------------TTAAGCTGCAGCCAATC-AGTAGTTTCCTTAGTTTGCTTCTGCCTTTTCTCTATAAAA
ATCTCT-CTTCTGCTGCTCTCCATGCAGTGCTCCAAAAACCACTTCC-AGTTTGGTGCTGTCCGATTCCAATTAGTTATT
ATTCAGATAAACTCCTAAAA-TTTTTCACATGCCTCAGTTTTATC-TTTTAAC----------------------AGCTC
---CTAGGAGTTATGAACC-TTGCTCTCAAGCTCAAATGTGCAAGAAATGTTTT
>Manis_javanica
ACATTGGGTCTAAGATCATTCTCTAGTTTGTGATAATGTCTTCCATAGTT---GACCT---T-GTTAAATTAATTA----
ACAAAGCCATGAGACTGAGATGGCTCTAAGACCATGGCAGTCTACATAAGCAACTCAAA----ATCTAAGCCTGAAAATG
CCTCAAGG---------------------TTCTCAAATTGAAACCCAAG---GAC-ACCAATCACCAACGGCCAACTAAG
TT--------------------TTAAGCTACAGCCAATC-AATAATTTCCTTACTTTGCTTCAAATTTTTCTCT--AAAA
GTCTCT-GCCTAGCATGTGTGGGTGGAGCACTCC--AATCCATTTCC-AGTTTGGCGTTGCCTGGTTCAAATAGATTTTT
GCTCAAAT-------------TTTTTATTATGCCTCAATTT-GTC-CTTCAAC----------------------AGCTC
---CTAGGAGTTATGAACC-TTGCACACAAACTCAAGTATGCAAGAAATATCTT
>Sus_scrofa
ACCTATGGTCCAAGATGCTTCTCCAGTTTGTGGCAATGACTTCAATATT----GACCT---T-GTTAGATTAATTAAACA
AGGAGGCCATTAGACTGAGGTGACTCTAATGCTGTAGCAGCCTACATAAGCAAACCAAA----ATCTAAGACTGTACATG
CCCCAAGGTTATAGAGCCTCAACATTCAATTATAAAATTGAAACCTAAG---GACAACCAATC----ACAGCCAACTAGA
CT--------------------GTAAGCTTTAACCAATC-AATAATTTCCTTACTCTGCTCCCATCTTTTCTTT------
-------CCCCAGCTCCTATTGGTAGAGTGCTCC--AAGCCACTTCC-ACTTTGGAGCCACCTGATTCAAACTGATTTTT
GCTCAGA-AAACTCCTAGAA-TGTTTCACATGCCTCAG---------TTTAAC----------------------AACCT
---CTAGGAGTTCTGAACC-TTGCTTCCAAACTCAGGTCTGCAAGAAATGTCTT
>Bos_taurus
ACTTGTGGTCTAAGATGCTTCTCCAGTTTGTGGCAATGATTTCAATAGTT---GACCT---T-GTTAAGCTAATTAAACA
AGGAGGCCATTAGACTGAGGTGATTCTAATGCTACAGCAGCCTGCACAAGCAAGCCAAA----ATCTAAGCCTG-ACTTG
CCTCTAGG---------------------TCATGTAATTGAAATCTAAG---GACATCCAATCACAAACAACCAATTAAG
CT--------------------TCAGGCTATAACCAATC-AATAATTTCCTTACTTTGCTTCCACCTTTTCTCT------
-------CCCCAGTTCCTGTTGGTGGAGTGTTCC--AAGCTATTTCC-ACTTTAG----------TTCAAATTGTTATTT
GTTCAAATAAACCCCTAAAA-TGTTTAATATGCCTCAGGTT-ATC-TCTTAAC----------------------AACTT
---CCAGGAGTTATGAAAC-TTGCTCCCAAACTCAAGTATGGAAGAAATGTTTT
>Myotis_myotis
ACCTGGGGTCTCAAATGC-TCTCCAGTTTGTGGCAATGACTTCAATATTC---AATCT---T-GTTAAATTAATTAAACA
AGGAGGCCACCAGACTGAGGTGGCTCTAATGCCG-GACAGCCTACACAAGCAAACCAAA----ACCCAAGCCTGTATATG
CCTCAAGG---------------------TTATGAAACTGAAACCTAAG---GAC-ATCAATCACAAGCAGCCAACTAGG
CT--------------------TTAAGCTATAGCCAATC-AATAATTTCCTTACTTTGCTTCCACTTTTTCTCTTT--AA
GTCTC--TTCTATGTCCTGTTTGTGGAGTGCTCC--TAACCGCTTCC-AGTTTGGTGCTGCCTCATTTGAATTGATTTTT
GCTCAAATAAACTCCTAAAATTTTTTAACATGCTTCAATTT-ATC-TTTTAAC----------------------AGACT
---TTAGGAGTTATGAACC-TTGTCCTCAAACTTAAGTAAGCAAGAAATGTCTT
>Rousettus_aegyptiacus
GCATGAGGTCTAAGATGCTTCTCCAGTTTGTGGCAACAACTTTAATATTC---AACCT---T-GTTAAATTAATTAGACA
AGGAGGT--TTAGACTGAGGTGGCTCTAATGTCATGGCAGCCTGCATAAGTAAACCAAA----ACCTAAGCCTGTAAATG
CCTCAAGG---------------------TTATGAAATTGAAACCTGAG---GACAACCAAGCACAAACAGCCAACTAGG
CT--------------------TTAAGCCATAGTCAATC-ACTAACTTCATTGTTTTGCTTCCACCTTCTCTCTATAAAA
GTCTC--TCCCAGTTCCTGTCAGTAGAGAACTCC--TAACCACTTCC-AGTTTGACGTTGCCTGATTTGAATTGATTTTT
GCTCAAA----CTCCCAAAA-TTTTTAATATGCCTCAATTT-ATCTTTTTAAC----------------------AGACT
---CTAGAAGTTATAAATC-TTGCCCCCAAACTCAAGTAGACAAGAAATGTCTT
>Condylura_cristata
ACATGTGGTTTAATATACTTC---AGTTTATGGCAG-GACAGCAATACCT---GACCC---TCGTTAAATTAATTAAACA
AGGAGGC--------TGAAGTAGTTTT--CTCATAGGTAGCCTAATTAAACAAACTAAAATCTATCTAATCCTGTAAATA
CCTGAAAT---------------------TTATGAAAATAAAACCTAAG---GGCAACTCATCACAAACAGCTAGCCTCG
TT--------------------TT----CATAACTAATC----AATTTCTTTCTTTT-----TGCCTTTTCTTCATAAAA
GTCTCT-TTCCAGCTCCTGTCTAGGGAGCGCTCT--TACTGAAGTTC-ATTTTGGTGC------ATTCAAAATGGTTTTT
GCTCAAATAAACACTTAATG-TTTTTAATATGCACCAGTTT-ATCTTTTCCTCTAGGAGTTAATCTTCAGTT---AACTT
---GTAAGAGTTATGAACA-CTGACCCCAAACTAAAGTATGTAAGAAGGCCTCT
>Solenodon_paradoxus
ACACGTGTTCTAAGATGCTTCTCCAGTTTGTGGCAATGACTTCAATATCT---GACCT---T-GTTATATTAATTAAATA
ATGAGACCATTAGACTGAGGTGATTCTAATACCATGGCAGCCTGTGTAAACAAATAGAA----ATCTAAGCCTATAAATG
ACTGAAGG---------------------TTATGAAATTAAAACTTAAG---GACAATCAGTCACAAACAGTCAACAATG
CT--------------------TTAAGAGATAGTGAATT-AATAATTACCTTACTTTACTTCTGTCTTTTCTCTGTAAAA
GTGT---CCCCTGCTCCTATCAATAGAGTACTTC--CAATCACTTAT-GGTTTGGTGCTATCTAATTC-AATAGATTTTT
GCCCAAATAAACTTCTACATTTTTTTCATATACCTTGGTTG-ATCTTTTGAC-----------------------AACCT
---CTAGGAGTAATGAATC-TGGCCTTCAAACTCAAGTATGCAGGAAACATCTG
>Equus_caballus
ACATATGGTCTAAGATGCCTCTCCAGTTTGTGGCAGTGACTTCAATATTT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------GACCT
---CTAGGAGTTATGAACC-TTGCCCCCAAACTCCTGTGTGCAAGAAAAGCCTT
>Ceratotherium_simum
ACATGTGGTCTAAGATGCTTCTCCAA-TTG-GGCAATGACTTCAGT-TTT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------GACCT
---CCAGGAGTTATAAATC-TCGCCCCCAAAGTCAAGTATGCAAGAAAAGTCTT
>Homo_sapiens
ACATAGAGTCCAAT-TGCTTCTCCAGCCTGTGGCAATGACTTCTGTACTT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------GACCT
---CTAGGAGATATGACTCATAGCCTTCAAACTCAAACATGCATGATAGATCCT



Bat35_LTR

>MER21C
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------TGTGTAGGAAAAAACAAAC-----------TGT
TTTTCTC---TACTCTCACA------------------ACACTTCT-GNCACCAA----ATGTGT----------GGGGT
TTTTCCCACACACCAAGCAATTCTCCAGCGGACACCAGCTGGGTGTCCTA--------------------------CAAT
TCAATTCAATTCTGACACTATCTACCTGGAGNTAGCGTCAGATCCCACAGGTTAAGGGCTCAGTCCCACAAGACTGCCCC
--------------------CACTTCAGACGCCAATCGCAAGT--------CCCAGGTTGTGACCTGTACTTCTGACCGA
CC-GGCTATAAATCGGGGGTTCCCA-CGACCCCC---TCCTCGGGTTCGATAATTTGCTAGAGCGGCTCACAGAACTCAG
GGAAACACTTTACT-TACGTTTACCGGTTTATTATAAAGGATA----TTACAAAGGATACAGATGAACAGCCAGATGGAA
GAGATGCATAGGGC--AAGGTATGTGGGAA---GGGGCGC-GGAG---CTTCCATGCCCTC----TCCGGGCGCGCCACC
CTCCCGGCACC-TCCACGTGTTCAGCAACCCGGAAGCTCTCCGAACCCCGTCCTTTNGGGTTTTTATGGAGGCTTCATTA
CGTAGGCATGATTGATTANATCATTGGCCATTGGTGATCAACTCAACCTTCAGCCCCTCTCCCCTCCCCGGAG--GTCGG
GG-----GTGGGGCTGAAAGTTCCAACCCTCTAATCACATGGTTGGTTCCCCTGGCGACCAGCCCCCATCCTGAGGCTAT
CCAGGAGCCCCCAGCCAAGAGTCACCTCATTAGAACAAAAGACGCTCC---------TATCACCCA--GGAAATTCCAAG
GGTCTTAGGAGCT-CTGTGTCAGGAACCGGGGTCAAAGACCAAA-----------TATTAGAA--CAAAAGATTCTCCTA
GCGCCCCTAT----------------------------------------------------------------------
---------------------------
>Canis_familiaris
CCTTAGTAAAATCCTTTGCTTAGTGTACATAC----TAAATATT------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------CAATGGCTTGGATGTTAATA---ACTG---TAT-TAGGAAAGCCTGTGT---TTCTCTTGTAT
CTTTCTC-----CTTTCACACAGAACATTTTACTTCTAACACTTCTGGTCACCAAGTGGGTGTGTGTGTGAGGGGGGGGT
GGGGTTGA-ACACCAAGCAGTTTTGT----GACACCAGCTACGTATCCTA--------------------------CAGT
TT--CTCAGTTCTGACTCTATCCACCTGGAGATAGTGTCA----CCCAAAGTTAAAAGCTCAGCCCCACAAAACTGCCTC
--------------------TCCTCCAAATACTAATCACAAGTAGTAGATCCCCAGGTTAC--CCACAATTTTTATCCAA
CTTGGCTACAAATCGGAGGTTCCCA-TGAGCTCTTTCCCCTTAGATTCGGTTATTTGCTAA-----TTTACAGAACTTAA
GGAAAAAATG-----TAAGTTTGCCAGTTTAT--TAAAGGA-------------------------ATAACCAGAT-GAA
GAGATACATAGGAT--GAGGTCTGGGAGGGTTCCAAATGCAGGAG---CTTCT-TCCTGGTAGATTTGGGGTA-GTCATC
CTCCTGGTAGG-TAGATGTGTTCACCAGCTGGAAAGCTTTCC--ACTCCATATTACTGGAATTTTAT-GAGGCTTCCTCA
CATAAGCATGATCAACA----------------------AACTCCATTTCTAGCCCTTCTCCCGTCTCTAAAGAAGTGGG
AA-----GTTGGGCTGAAAATTCCAAGCTTATAATCATG-GCTTGATCTTTCTGGGGACCAGCCCCC-----------AT
CCAGGAGCCC---ACCAAGAGTCACCTCATTAGAACAGGAAATGCCCCTAGTGCTCTTATCACTAAGGGGAATTTACAAG
GGTTCTAGGAGCC-CTGTGCCAGGCACTTGGGAGGAAGACCAAATAT-------TTATTATAAAGCACAGGATCACAGTC
-------------ACTT---AATG--TTAC--TTTTTTCAGGATCATTTGTGT--------TTCTTTCCTGATATTTTTG
TTATTA------CTGTGGGGAAAAGAT
>Felis_catus
CCTTAGTAAAAGCCTTTGTTCAACATAAAGCC----TAAGTATT------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------AAATGGCCCAAGTGTTGATA---ACTG---TAT-TAGGAAAACCTATAG---TTCTCTTGTGT
CTTTCTC-----CTTTCACTCAGGACGCCTCACTTCTAACACTTCTGGTCACCAGATGTATGTGTGTGG------GGCGG
GTGGTCCA-ACACCAA-----TCTTT----GGCACCAGCCGGGTGTA-----------------------------CAGT
TTAACTCAATTCTGACTTTGCCTACCTGGAGGTAATGTCAGATCCCACAGGTTAAGAGCTCAGCCCCACAGAACTGCCCC
C-------------------CACTCTAGATACTAATCACAAGTAGTAGATCCCCAGGTTAC--CCACAACGTTTGTCCAA
CTTGGCTACAAATCACACGTCCCCA-TGACCGCTTTCCCCTTAGATTTAGTGATTTGCTAGAACAGTTCACGGAACTCAG
GGAAACACT------TAAGTTTGCCAGTTTAT--TAAAGGTTA---TGAAAAAAGGATACAGATGAA----------GGG
GAGATACATAGGGT--GAGGTCTGGGAGGGTCCCAAATGCAGGAG---CTTCT-TCCTGGTGGATTTGGGGTGTG-CACC
CCCCTG-------------------------GAAAGCT-TTCAAACCCCATACTACTAGGATTTTGTGGAGGCTTCCTC-
CGTTGGCATGATCAATA----------------------AACTCCATTTCCAGCCCCTTTCCCCTCTCTAAAGAAGTGAG
TG-----GTGGGGCTGAAAATTCCAAACTTAGAAGCATG-GCTTGGTCTTTTTGGGGACCAGCCCCC-----------AT
CCAGGAGCCC---ACCTAGAATCACCTCATTAGAACAAAAGATGCTTGTAGGGCTCTTATCACTTA--GGAATTTACAGG
GGTTTCGGGAGCC-CTGTGCCAGGGACTGGGGAAGAAGACCAAATAGATAT---TTATTATAAATCACAAGATCACAATC
-------------ACTT---AATA--TTACTTTTTTTCCAAGACCATTTGTGT--------TTCTTTGCTGATATTTTTG
TTTTTAACTCTGCTGTGGGGAAGAAAT
>Manis_pentadactyla
CCTTAGTAAAGTTCTTTGCTCACCTTACATGCTCAGTAAATTGA------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------TAACTGCT------------------------T-TGGAAAAACCTACAGATCTCTTCCTGTGT
CTTTCTCCTTTACTTTTACACAGAATGCTTAACCTTTGATGCTTCTGGTCACCAA----ATGTCT----------GGGGA
GATTTCAA-ATACCAAGCAATTCTGA----GACACCAGCTTGTTATCCTATAATTTAGATTTTAACACAATTAAGTCAAT
TTAATGCAATTCTGGCTCTATCTACTGGGAGACAGCATCAGTTCTCACTGGTTAAGGACTCAACCCAA--AGACTGCCCC
C---------------------ATTCAGATGCCAATCACAAGTACTAGGTCCTGAGCTTAC--CCACAGCTTCTGTCCAA
CTTGGCTGCCAATCAGAGGTTTCAG-TGACCTTCAACCCCTTGGATTCAATTATTTGCTAGAACAGCTCACAAAGTTCAA
GGAAACACTTAACT-TATATTTGCCAGTTTAT--TAAAGGATA----TTATAAAGGATACAGATGAACAGTCAGAT-GAG
GAGATACATAGGGC--AAGGTTTGCGAGTGTCTTGGGTTCAGAAG----CTCTGTCCCTCCTGAATGGAGATG-----TC
CTCCTG---------AAGTGTTCACCAGGCTGCAAGTG-TTCGAACCCCATACTGTTGGGATTCTGTGGGGACTTCCTAA
TGTAGGCACAATTAGCT-------------------ATTAACT-CATTCCCAGCCCCTCTCCCCTCCCGAGAGAAGTGGG
GGATGGGGTGGGGTTGACAGTTACAAAATTCTAATTATG-GCTTGGGTTTTCTAGGGACCAGCCCCCCT-----------
-----AGCCT---ACCCATAGTCACCTCATTAGAGCAAAAGGTGTTCCTAGTG---------CTTA--GGGATTTACAAG
GGTTTCAGAAGCC-CTATGTCAGGGACTGGGGAAAAAGACCAATTATAAATAT-TTATTATAAATCACAGTAACACAATA
-------------AC-----AATA--TTAC--TTTTCCCAAGCACATTTGTAT---------TCTTTACTGATGTTT--G
TTTTTCCTATAATAGTAGGACAA-GAG
>Sus_scrofa
CCTTAGTAAA----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------TAACTCAAATGTTGATA---ACTA---TAG-AGGGGAAACCTGCATTTCTCCTCCTGTAT
ATCTCTT--TTACTTTCATGCATAATGCTTCACTTCTGACACTTCTAGTCATTAA----ATGTGG----------GAGGG
TTTTTCCA-ATACCAAGCAACTCTGC----GACACCAGCTGGATG-----------------------------------
-----ACAGTTCTGACTCTATCTGCCTG--GGTAGCATCAGATCCCACAAGTGAAGGGCACAGTCCCACGGGACAGCCGC
CACCCTCACCCCATCCTC--CACTGCACCTGCCAATTGTATGTAGTA-------------------CAACGTCTATCTGA
CTGCGCTGTAAATCGGAGGTTTCCA-TAACCTCCTCTCCCTTGAATTTGATTATTTGCTA-AACATCTCACAGAACTCAG
GGAAATACTT-ACT-TCCAATTGCCAGTTTAT--CAAAGGATA----TAATATAGGGTGAAGATATACAGCCAGCT-GAA
GAGACAAATAAGGT--GAGGTCTGGG-GGGTTCAGGGTGCAAGAGCCACCTCTGTCCCTGTCCATTTGGGATACGTCACC
CTCCTGGTATG-TGAATGTGGTCACTAACCTGGAAGTG-TTCAAAGCTCATGCTATTGGGATTTTAAGGAGGCTTCTTCA
CATGGACAAGACCAATT-------------------CTTAGCTCCATTTTCAGCCCCTATC---TCTCCAGAGGAGTAGA
GG-------GAAGCTGATAATTCCAAGCTTCTAATGATG-GCTTGGGCTTTCTGGGGGCAAGCTTCC-----------AT
CCAGGAGCCC---ACCCAGAGTCACCTCATTAGAGCAAAAGATGCTCTTAGT-TTCTTAGCACTTA--GGAATTCACA-G
GGTTTCAGGAACC-CCATGTCAGGGACTAGGGATGAAAA-------TACATTTCTTGTTAAAAATCACAATATCACAGTC
-------------ACTT---AATA--TTAG--TTTTTCCAGGACCGTTTGTAT--------TTTTTTGCTGATATTTTTG
TTTTTTACTATAATTTGGGGAGAAGAT
>Tursiops_truncatus
CCTTCG-AAAGCCCTGTGCTCCCCGTTCGTGCTCAGCAAATATT------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------AAACGGCTCAAATGTTGATA---ACTG---TAT-TGGAAAAACCTGCATTCCTCCTCTTGTGT
CTCTCTT--TTACTTTCACACAGAACACTTCACTTCCGACACTTCTTGTCACCAA----ATGTGT----------GGGAT
TTTTCCCA-ATGCCAAGCAATTCCAT----GACACCAGCTGGGTGTCCCA--------------------------CAAT
TTAACTCCTTTCTGACTCTGTCTACCTGGAGATAACATCAGATCCCACAGATCAAAGGCTCAGACCCTCAAGACTGTTCC
CTCCCAGCCCACAACCATAACACTTCAGCTGCCAAATGCAAGTTGTAGGGCCCCAGGTCAC--CCACCACTTCTCTCTGG
CTGGGCTACAAATCACAGATTCCCA-TGACCTCT---CTCTTATATTCAGTTATTTGCTAAAG-AGCTCACAGAACTCAG
GGAAACACTTAACTTAACGTTTGCCAGTTTAT--TAGAGGATA----TGATAAAGGAAACAGATGCACAGCCAGAT-GAA
GGGATACGTAGGGT--GAGGTCTGGGAGGGCCCAGAGCGCAGGAG---CTTCTGTCCCTGTCTAGTTGGAATGCATCGCC
CTCCCCGTGTG-TGAATGTGTTCACCAACCTGAAAGCT-TTCAAACCCCATACTATTGGGATTTTAAGGAGCCTTCCTCA
CATGGATAAGACCAATT-------------------TTTAACTCCATTTTCAGCCCCTCTCGTCTCTTCAGAGAGGTGGG
GGA----GTGTTGCTGATAATTCCAAGCTTCTAATGATG---------------GGAACCAGATCCC-----------AT
TCAGGAG-CC---ACCCAGAGTCACCTGATTAGAACAAAAGATGCTCCTACTGTTCTTAGCACTTA--GGAATTTATACG
-GTTTCAGGAGGC-CTCTGTCAGGGACTGGGCATGAAAACCAAAGATATATTTCTTATTATAAATCACAGTGTCACAGTA
-------------ACTT---------------------------------------------------------------
---------------------------
>Equus_caballus
CCTTAGTAAAGTCCATTGCTCACGGTCCATGCCCAGTAAA----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------TAGCTCAAGTGTTGATA---ACTC---TAT-TGGAAAAACCTACAGATCTCCTCCTGTGT
CTTTCTTCTTTACTTTCACACAGAA-----CACTCCTGACACTTCTGGTCATCAA----ATGTGT----------GGGGG
TTTTTTTA-ACACCAAGCAATTCTGC----ACCACCAGCTGGGTGTCCTA--------------------------CAAT
TTAATTCAATTCTGA--CTGTCTACCTGGAGACAGCGTCAGATCCCACAGGTTAAGGGCTCAGTCCCACAAGA-TGCCCC
C-------------------CACTTCAGATGCCAGTTGCAAGTAGTAGGTCCTCAGGTTAC--CCATAACTTCTGTCTGA
CTTGGCTAC---TCGGAGGTTCCCA-TGATCTCCTCCTTCTTGGATTCAGTTATTTGCTAGAACAGCTCACAGAACTCAG
GGAAACAC--------ACGTTTGCCAGTTTAT--TAAAGGATA----TGATAAAGGACACAGATGAACAGCCAGAT-GAA
GAGATACATGGGGC--GAGGTCTGGGAGGGTCCAAAGTGCAGGAG---CTTCTGTCCTTGTGGATTTGGGGTCTGTCACC
CTCCTGGTG---TGGATGTGTTCACCCACAGGAAGGCT-TTTGAACACCATACTATTGGGATTTTCTGGAGGCTTCCTCA
CGTAGGCATGATCGATT-------------------GTTAACTCCTTTTCCAGTCGCTTTC--CCCTCTAGAGAAGCGAG
GG-----GCAGGGCTGAAAATTCTAAGTGTAAAGTGAGGCTCTTGGGCTTTCTGGGGACCAGCCCCC-----------AT
CCAGGAGCTC---ACCCAGATTCACCTCATTAGAACAAAAGATGCTCCTAAGGCTCTTATCACTTA--GGAATTTACAAG
AGTTTTAGGAGCC-CTGTGTCAGGAACTGGGGATGAAGACCAAATATATGTTTCTTATTATAAATCACAATATCATAATA
-------------ACTT---A--G--TTAC--TTTTTCCAGGACCATTTGTA---------TATTTTGCTGATATTTTTG
TTTTTA-CTATACTGTGGGGAGAAGAT
>Ceratotherium_simum
CCTTAGTAAAGTCCGTTGCTCACCGTACATGCTCAGTAAATATT------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------AAATGGCTCAAGTGTTGATA---ATTG---TAT-TGAAAAAACCTACAGATCTCCTCCTCTGT
CTTTCTCTTTTACTTTCACACACAACACTTCACTTCTCACACTTCTGGTCACCAA----ATATGT----------GAGGA
GGGCTTCA-ACGCTAAGCAATTCTGC----AACATTAGCAGGGTATCCTA--------------------------CAGT
TTAACTCAATTCTGAGTCTATCTGCCTGGAGATAGCGTCAGATCCCGCAGGTTAAGGGCTCAGTCCCACAAGACTGCCGC
C-------------------CACCTCAGATGTCGATTGCAAGTTGTAGATCCCCTGGTTAC--CCACAACTTCTGTCT--
-TTGGCTACAAATCGAAGGTTCCCA-TGACTTCCTCCCCCTTGGGTTCGATTATTTGCTAGAACAGCTCACAGAACTCAG
GGAAATACT------TACATTTGCCAGTTTAT--TAAAGGATA----TGATGAAGGATACAGATGAACAGCCAGAT-AAA
GAGATACATAGGGC--AAGGTCTTGGATGGCCTGGAGCGCAGGGG---CTTCTGTCCTCATGGATTTGGGGTGCGTCACC
CTCTTGGTA---TGGATGTGTTCACCCACCTGAAAGCT-TTTGAACCCCATACTATTGGGATTTTATGGAGGCTTCCTCA
CATAGGCATGATCAATT-------------------ATTAACTCCTTCTCCAGCTCCTCACCGCTCTCTAGAGAAGTGGG
GA-----GTGGGGCTGAAAATTCTAAGCCTCCAATTATG-GCTTGGGCTTTGTGGGCACCAGCCCCC-----------AT
CCAGGAG------------------CTCATTAGAATAAAAGATGCTCCTAAGGCTCTTATCACTTA--GGAATTTACAAG
GGTTTTAGGAGCC-CTGTGTCAGGAACTGGGGACAAAGACCAAATATATAT---TTATTATAAATCACAATATCGTAATA
-------------ACTT---A--G--TTAC--TTTTGCCAGGACCATTTATAT--------TTTTTTGCTGATATTTTTG
TTTTTA-CTATACTATAGGGCAAAGAT
>Myotis_myotis
CCCTACTAAAGTCCTTTGCTCACCATACGTACTCAGTAAATATG------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------AAATGGCTCAAGTATTGATA---ACTG---CAT-TGAAAAGATCTACAG---TTCTCTTGTGT
CTTTCTCCTTTACTTTCACACAGAACACTTCATTTCTGAC---TCTAGTCACCAA----ATGTGTGTGTGTGGCAGGGG-
--------------AAACAATTCTGC----AGCACCAGCTGGGTGTCCTA--------------------------CAAT
TTAACTCAATTCTGACTCT----ACCCAGAGATAGCATCAGATCTCTCTGGTTAAGGGTTCAGTCCCATGAAACTGCCTC
CC------------------CATTTCAAATGCCAATCAAAAGTAGTAGGTCCCCAGGGTAT--TCACAACTTTTGTCCTA
CTTGGTTACAAGTCAGAGCTTCCCA-TGACATCTCCCCCCTTGAATTTGATTGTTTGCTAGAACAGCTCACAGGACTGAG
GGAAACGTT------AACATTTGCCAGTTTAT--TAAAGGATA----GGCTAAAGAATGCAGATGAAGAGCCGGGT-GAA
GAGACACACAGGGTGAGAGGTCTAGGAAGATCTCAAGTGCCTG-----CTTCTGCCCCTGTGGAATTGGGATAGGT----
---------------------------------------TTGGAACTCTGCACTGTTGAGATTTTATGGGAGCTTCCTCA
TGCAAGCATGATCAATT--------------------ATACATTCATTTCCAGCTTC-----CCTGTCTAGCGAAGTGAG
GG-----GCAGGGGTGAAAATTATAA---CCTAAATA----------------------CAGCCCCATCCCAGGAAACAT
TTAGGAGCTC---ACCCAGATTTGAGTCATTCTAGCAAAAGGTGCTCCTTGTGTTCTTATCACGTA--GGAATTTACAAG
AGTTTCAGGAGCCCTTTCGTCAGGGACTGGGGACGAAAACCAAATACATATTTCTTACTATAAATCGTAAGTTCAGAATA
-------------ACCT---GCTG--TTAC--TTTTTCCAGAACCATTTGTAT--------TTCCTTGCTGATATTTTTG
TTTTTA-CTGTGCTATGGGGAGAAGAT
>Rousettus_aegyptiacus
CCTTAGTAAAGTCCTTTGCTCACCATACATACTTAGTAAATATT------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------AAATGGCTCAGGTGTTGATA---ATTG---TGT-TG-AAAAACCTACAG---TTCATCTATGT
CTGTCTT-----CTTTCA-ACAAAACAATAGACTTCTTATACTT-TGGTCACCAA----ATATGT----------CAGAG
CTTTTCTA-ACACTAAGCAGTTCTGC----CATACCCACTGGATGTCTTG--------------------------CAAT
TTAACTCAGTTCTGACTCTGT----CTGGAGATAGCGTCTCATCTCACAGGTTAGGGGCTCAGTCCCACAAGACTGCACT
CCCGGCCCCACCTACCCA--CACTTCAAATGTCAGTCGAAAGTAATAAGTCCCCAGGTTAC-----TCAATTTTGTCTGA
CTTCGCTATAAATCAAAGCTTTCCATTGACATCTTCCCCCTTGAATTCAATTGTTTGTTAAAACAGCTCAT-GAGCTCAG
GGAAACACATAACT-------TGCCAGTTTTT---AAAGGATGTGATTGATAAAGGGTGCAGATAAACAGCCAGAT-GAA
GAGGTACATACACC--TATGTCTGGTTAGGTCCCAAGTGAAGGAG---CGTCTGTCCTCATGGAGTTA-----------C
TTCTCAGTACGTTGGTTGTGCTCACCAACCTGAAAGTT-TTCAAACCCTGTCCTATTGAGGTTTTGTGGAGGCTTCCTC-
-----------------------------------------TTGCTTTACCAGCCTT-----GCTCTCTAGAGAATTGGG
AA-----GAAGGGTCGAAAATTCAAAGCTGCTAATTTTG-GCTTCAGCTTTCTGGGGACCAGCCCCCATCCAGGAACCAT
TCAAGAACTC---ACCTAGAGTTGCCTCATTAAAACAAAAGATGCTCCTAGTGCTCTTATCACTTA--GGTATTTACAAG
GGTTTAAGGAGCCTTTTTGTCAGGGGCTGGAGACGGAGACCAAATATGTAT---TTCTTATAAATCAC--------AGTA
-------------ACTT---AATA--TGAC--TTTTTCCAGGACCATCTGTAG--------TTCTTTGCTGATGTTTTTG
TTTTTA-CTATACTGAGGAGAGACGAT
>Condylura_cristata
CCTCAGTAAAGTCCTTCATTCACCATATGTACTCAGTAAATGTT------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------AAATGGCTCAAGTGGTGATA---ACTT------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------AATA--GTA---CTTTTATATGAACACATGTGT--------ATCTTTGCTGATATTTTTG
TTTTTA-CTATGCTGTGTGGAAAAGAT
>Uropsilus_gracilis
CCTCAGTAAAGTA---CATACACTGTATGTACTCAGTAAATATT------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------AAGTGGCTCAAGTGATGATA---ACTT------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------AGTA--TCA---CTTTTATAGAATGACATGAAT--------GTCTTTGCTGATATTTTTA
TTTTTTACTATACTGTGTAGAGAAGAT
>Homo_sapiens
CATTAGTAAAGTCTTTTGCTCACCATAAATGCTCAATAAATTTTATTTTATTTTATTTTTATTATTTATATTATTTGTTT
TTATTTTATATTACTTTATTTATTTTTGGGTCTCACTCTGTCACCCAGGCTGGAGTGCCGTGGCATGATCATAGCTTATT
GCAGCCTCAAACTCCTGGCCTCAAGAGATCCTCCTGTTTCAGTCTGTCAAGTAGCCTGGTCTCCCTATATTGAGTAGGCT
GTTCTTGAACTCATGGGCTAGGCGATGCACCCACCTCTGCCTTCCAAAGTGCTGGGATTACAGGCATGAACCACCACACC
CAGCCTCAGTAAAATTAAAATGGCTGAAGTGTTGATG---ACTT------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------AATGTGTTAC--CTTTTCTAGGGCTATTTGTCTTTTTTTTTTTTTTTGCTGATATTTTTG
T-----------------GGAGAAAGT



Bat37_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
----------------------------GTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATT
TCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAAT
AAAGCTGGAAAAA-------------------------------------------------------------------
------------
>Equus_caballus
TGGC----TGTTAGAATAC----AGTATGAAGCGGAGGGGGAAAACAA-----------------------GGTCAGGG-
--ATATTT---AAAGAGTTTTTTAT---------------GATGATGGATA--TTAACTAGACCGATTGTGGTGATCACT
TCACAATAGATACAAATATTCAATCATTATGTTGTACACCTGAAACTAAT-----CGTTACGTGCCAATTATATCTCAGA
AAAAAAAGAAATG---AAAAAAGTTTTT---TGT------AGAACATCAAGGACAAGGGGATGCACGGCTGCACTAGAAG
CTGAAGCATCTG
>Ceratotherium_simum
TTGC----TGTTAGTATAC----AGTATGAAGTGGAAGTGGAAAATGA----------------------GGGGCAGGGA
GGATATTT---AAAGAG-TTTTTAT---------------GGTGATAGATG--TTAACTAGACTGATTGTGGTGATCATT
TCACAATACATACAAATATTGAATCATTATGTTGTACACCTGAAGCTAATAA---TGTTACATGCCAATTATATCTC--A
AAAAAAAGAAAGA---AAAAACGTTTTT---TGT------AGAACTCCAAGGACGAGGTGATGCACGTCTGGACTAGGA-
---CGGCGTCTG
>Myotis_myotis
TGGC----TCTTAGTTTAC----AGTATGGTTTGGAAGGGGAAAATGA----------------------AGGGCAGAGA
GGATATTT---AGAGTG--TTTTAT---------------GGTGATGGATG--TTGATTAGACATACTGTGGTGATCATT
CTGCAATATACACAAATACCAAGTC---ACGTTATACACCTGAAACTAATGTAA-TGTTATAAGTCAATTACATCTC---
---AAAAAA-------GAAAAACTGTTT---TGC------AGAACTTCAGGGACAAGGCGATGCACAGCTGGACTAGGG-
---AGGTGTGAG
>Rousettus_aegyptiacus
TGGC----TGTTAGTACAC----AGTACGGACGAGAAGGGTAAACTGA----------------------GGCACAGGGA
GGCTATTT---AGAGTG--TTTTAT---------------GGTGATGGATGT-TTAAATAGACTTGTCATGGTGATCGCT
TCGAAATATACACAAATATCAAATCACTATGCTGCATACCCAAAGCTAA------TATAATACGTCGATTATATTTCA--
----------------AGAGAAGTTTTT---TGC------AGAACTTCTGGGACAAGGTGATGCACAGGTGGACCAGGA-
---TGGTGTGAC
>Canis_familiaris
TGGCCACATGCTA--ATAC----AGCAGGAACTCGAGTGGGAAATGCA-----------------------GGGGAGGGA
GGATATTT------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------AGAGAT----TT---TCC------AGACCAGCAAGGACAAAGTGATGCCCAGCTGGATTAGGA-
---TGCTGTCAC
>Felis_catus
TGGTCACATCTTA--ATAC----AGCATGCACTCGAGGGGGAAACGCA-----------------------GGGCGGGAA
GGATATTT------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------ACAGAG-GTTTT---TGC------AGAGCGTCAAGGACGAGGTGATGCCCAGCTGGATCAGGA-
---GGGCGTCAG
>Manis_pentadactyla
TGGC----TGTTGGTATAT----GGTATGAACTAGAATGGAAAAATGA----------------------GGGGCAGGGT
GGATATTT------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------AAAGAG-----------------------TTCAAGGACAAGGTGATGCACAGCTGCACTGGGA-
---TGGTGTCAG
>Sus_scrofa
TGGC----TGTCAGTATAT----AGTAAGACCCAGAAGAAGAAAGGAG-----------------------GGGCAGGGA
GGAGGTTC------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------AAAGAGTTTTTC---TGC------AGGACTTTCCTGG-------------AGCTGGACCCGGA-
---TAGGGTCAG
>Bos_taurus
TGGC----TGTTAGTATACCGTTAGTACAATGTAGATGAAGAAGTGAG-----------------------GGGTAGGAA
GTATATTT------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------AAAAAGTGTTTC---TGC------AGAACTTCAGGGTCAAAGTGATAGACAGCTGGACTAGGA-
---TGGTGTCAG
>Condylura_cristata
TGGC-------------AC----AGGAAGTCAGAGATGGGGAAACCAGTGCAGGTTTGGGCACCATCCTGCTGGAGGGGC
GGAGACTA------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------GATGAT-TTGTC---TAC------AAAG-----AGGAGAGAG--------AACTGGGCTAGGG-
---CAGTGTCGG
>Erinaceus_europaeus
TGGC----AGTTAGTATAC----AGGATGAACTAGAAGGTGAAAAAAA---------------------ATGGGCTGAGT
GGGTATTT------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------AAAGAGTTTTTT---TTCCCCCCCAGAAGTTCAAGGACAGCATGACATACAGTAGGACTGGGA-
---TGGCATCAA
>Homo_sapiens
AGGC----TGTTAGGATAC----ATTAGGAACTGGAAGGAGAAAGGAG-----------------------GGTTAGGCA
GGACATTT------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------CAAGAGTGTTTT---TGC------AGAATTTCAAGGACAGAGTGATGCACAGCTGGACCAGGA-
---TGGTGTCAA



Bat37_LTR

>ERV54-EC_LTR
-------------------------------------------------------------------TGTT-----AAAA
ACAAGACAACAGGCCCAAAATGGAGTCACTTATGCTAAGCCCCACGTCACCAA-ACCGAGACTTAACTTAATTACAGTTT
CGGCTCTCCCAGAAATGGAATCTTAAACCAGTCAATCAGGAATCACCTGATCAGCACTAGTTAGGTAATCTGCCTGATAG
ACC------------CCTGCCATCC----CCTAAAGGAAAGTAACCTTGCAATAACCAATCCACTTTTTTGCCTAGTATA
ACTTCCTTGTTCCTGCTCCCTTCTGCCTATAAAAGTCTTTCATTTTGTACAGCTCCTCGGAGCTCCTTTCTATCTGCTAG
ATTGGATGCTGCCCAATTCATGAATCATTGAATAAAGCCAATAAGATCTTTAAAATTTACTCAGTTGAATTTTGT-TTTT
T--AACA-------------------------------------------------------------------------
-----------
>Canis_familiaris
TATAGCTTTACAGATAGTTGTAGTACGATAAGCAGTGTTCAGTGTAATAATGGTGCG---GTGG---TGCT-----GAAA
ACAAAACAACAGGCCCAAATGGTAGTCCCTTGTGCTAAACCCCACGTCACCAA-GTCAAGACTTAACTTAATTACCGTGT
GGGCTTTCCCAGAAATGAAGCCATAGG-TGGTCAATCAGGAATCCCAAAATAAGCATCAGTTAGGTAACCTGCCTGACAG
ACG------------CTTACCATGC----CCTAAAGGAAAGTGGCCTGGTGTTAACCCGTCCCCGTGCGTGTCTAGGAAA
ACCCCCTTGTTCC-ATCCCCTTCTCCCTATAAAAGTCTTTCATT----------CCCCAGAGCTCCTTCCTATCAGCT-G
GTTGGAGGCCGCCTGATGCATGAATGTTTGAGTAAAGCCAATAGGATCTTCAAAATGTACTGGGTTGAATTTTGT-TGTT
---AACA---GGTG---TTT-GTTGG----------------------TTGTCTTTAT-CCCTCTAAGGAAGAGACATAC
TTTGTTCCACA
>Felis_catus
AATAGCTTTACAGAGAGTTGTAGAAAAGTAAGCAGTACTCAGA-------------A---GTAA---TGCT-----AAAA
A--------CAGGCCTAAATTGGAGTCAATTATGTTAAGCCCCATGTCGCCAA-ATCAAG---------ACTTACAGTTT
CAGCTCTTCCAGAAATGGAATTATAAGGCAGTTAATCAGGAATCGTGCAATAAGCATTACTTAGGTAATCTGCCTG----
ACC------------CCTGCCATGT----CCTAAAGG-AAGTAACCTTGCAATAACCAACCCATGTTTTGGGCTAGTGTA
ACTTTCTTGTTCC-AGGCCCTTCTGCCTATAAAAGTCTTTCATTTTGTGTAATCACTTGGAGCTCGTTTCTGTCTGCTGG
TGTGGATGCTGCCTGATGCATGAGTAATCGAAGAAAGCCAATATGATCCTCAAAATGTACTCAATTGA-TTTTGT-TTTT
T--AACA---GTTG---TTT-ATTTATTGTCTTA--------------TTGTCTTTAC-CCCTCTAAAGAAGAAATATAT
TTTATCTCACA
>Manis_javanica
TACAG------AGATTTTTGCAGGGCAATAAGCAGCATGCAG-GAGGGAAAGGTGTA---CTAG---TGTT-----AAAA
ACACAGCAACAGGCCCAAGATGGAGTCATTTATGCTAAG-CCCATGTCACCAA-ACAGAA-------TTAGTT------T
CAGCTGTCCCAGAAATGGAATCTTCAACTCATCAATCAGGAATTGCCTGATCAGCTCTGGTTAGATAACCTGCCTGATAA
ACCTCCATACCTCCACCCACCAGTC----CCTAAAGGAAAGTCACTTTGCAAGAGCCAACTTACTTC-TCGTTTAGTGAA
---TCCTTGCTCCTACTTCTTTCTGCCT-TAAATGTCTTTCATTGTGTACAGCTCCTCGGAGCGCCTTTCTGTCTGCTAG
ATTGGATGCCACCTGATTTATGAATCACTGGATAAAGCCAATAAGATCTTCAAAATTTACTCAGTTGAATTTTTCGTTTT
---AACT---ATTG---TTT-ATTTA----------------------TGGTCCTTAT-CCCTCTAAAGACAAAATATAA
TTTACTCCATA
>Sus_scrofa
AATAACATTACAGAGGGATGCAGTGCAATAAGCAGTACTCAGCAGAA-AAAGGTGTA---GTAG---TGTT-----AAAA
ATAATACAGCAGTCCCCAAGTGGAATCTTTTATGCTAAGCCTCCTACCACCAA-ACCAAG-----ATTCAATCACAGTAT
TGGCTCCCCCAGAAATGAATGCTTACACTAATTACTCAGGGGTTCTGTGATCTGTCCTAGGGAGGTAATGTACCTAACAG
ACT------------CCTGTCACCC----CCTAAAGGAAAGTAGGCTTGCAATAACTAACCCACTTT-TTGTCTAGAATA
ACTTCCCTGTC---ACTCCTTTCTGCCTGTAA--GTCTTTCACCTTGTAC----------AGCTCCTGTCTCTCTGCTAG
GTTGTATGCTGCCCAATTCATGGATCATTGATTAAAGCTAATAAGATCTTCAAAATTTACTCAGTTGAATTTTGT-TTTT
T--AATA---GAGG---TGG-TTTTTTC--------------------TTACCTTTATCCCCATTTACAAAGAAATGTAT
TTTATTTGATA
>Bos_taurus
AATAATTTTACAGAGAGATTCAGTCCAATAAGCAGTGCTCAGCAGGA-AAAGGGGTA---GCAG---TGTTAGAAAAAAA
ACAATACAATTGTTCCC-AATGAAGTCACTTATGCTAAGCTCCACATCACTAAGACTGAGATTTAACTTAATTATGGTTT
TGGTTCCCCCAGAAATGAAATCTTACATCAATCAATCAGGAATTTTATGATCAGCTCTAGAGAGGTCATTTGCCTGATAG
ACT------------CCTGCCACCT----TTTAAGAGAAAGTAACCTCACAATGACCAACCTACTTT-TTGCCTAGAATA
ACCTCCTTGATCTCATTCCT--------------GTCTTTCATTTTGTATAGCTCCTCAAATC----TTCTGTCTATTGG
GTTACATGCTGCCCTATTCATGTATCATGGGACAAAGC---TAAGATCATTAAAATTGACTCAATTGAATTTTGT-TTTT
A--AATA---TATT---TTT-G--------------------------TTGCCTTTAA-CTTGTTTAAGAAGAAATATAT
TTCACTTGATA
>Equus_caballus
AATAACTTTGCAGAGAGATCCAGCACAAT-AGCAGTACCCAGCAGAC-AAAGGGGTA---TTAC---TATT-----AAAA
ACAAGACAGCAGGCCCGCAGAGGAGTCGCTTATGCTAAGTGCCACATCACCAA-ACCAAG-----ATTTAGTTACACTGT
TGCCTCTCCCGGAAATGGAATGTTAAACCAGTCAATCAAGAATCCCCTGATCAGCGCTAATCAGGTCATCTGCCTGATAG
ACC------------CCTGCCAGCC----CCTAAAGGAAAGTAACCTTGCAATAACCAACACACTTTTTTGTCTAGAGTA
ACGTCCTTGTTCCCGCTACCTCCTGCCTATAAAAGTCTTTCATCTTGTACAGCCCCTCGGAGCTCTTTTCTATCTGCTAG
AGTGGATGCTGTCCGATTCATGAATCGTGGAATAAAGGCAATAAGATCTTCAAAATTTACTCAGTTGAATTTTGT-TTTT
TT-AACA---GTTT---ATTTA--------------------------TTGCCTTTAT-CCTGCTAAAGGGGAAATACAA
TTTATTGCATA
>Ceratotherium_simum
AATAACTTTACAGAGAGTTGCAGTACAATAAGCATCACTCAAGAGAA-AAAGATGTA---GTAC---CATT-----AAAA
ACAGGACAACAGGCCCAAAATGGAGTCGCATATGCTAAGCCCCACATCGCCAA-ACCGAG-----ATTTAATTAGAATGT
TGCCTCTCCCAGAAATGGAATCTTAAACCAGTCAATCAGAAATCACCTGATCAGCACTAGTTAGGTCATCCACCTGACGG
ACC------------CCTG-CATCC----CCTAAAGGAAAGT-ACCCTGCAATAACCAACCTGCTTTTTTGTCTAGTGTA
ACTTCCTTTTTCCTACTCCCTCCTGCCTATAAAAGCCTTTCATTTTGTACAGCTCCTCAGAGCTCTTTTCTATCTGCTAG
AGTGGATGCTGCCTGATTTATGAATTGTTGAAT-AAGCCAATAAGATCTTCAAAATTTACTCAGTTGAATTTTGT-TTTT
TT-AACA---GTTG---TTT-ATTTA----------------------TTGCCTTTAT-CTCGCTAAGGAAGAAATATGT
TTTATTCCATA
>Myotis_myotis
AATAACCTTAAAAAGATTTGCTATACAATAAGCAATACTCAACAGAA-AAGGGTATA---GTGG---TGTT-----AACA
ATAAGACACCAGACCCAAAATGGATTTGCTTATGCTAAGCCCCACATTACCAA-ACCAAGACCTAATTTAATTATGGTTT
TGGCTCTCCCAGAAATGGAATCTTAAACCAGTCCATCAGGAATCAGCTGATCAGCACTAGTTAGGTCCTCTACCTGACAG
ATT------------CCAGCCATCCCCTGCCTACAGGAAAGTGACCTTGCAATAAACAACCTGCTTTTTTGTCTAGTATA
AATTCCTTGTTCCCATTCGCTTCTGCATATAAAAGTCTTTCATTTT-TACTGCTCCTCAGAGCTCCTTTCTATCTATTAG
GTTGGATGTTGCCTGATTCATGAATCATTGAATAAAGCCTATAAGATCTTCAAAATTTACTCAGTTGAATTTTGT-TGCT
TTTAAAA---ATAA---GTGTCTTTA----------------------TTGTCCTTTT-CCCATGAAAAAATAAATATAT
TTTATTCTATA
>Rousettus_aegyptiacus
GGTAACTTTACAGATAATTGTAGTGTGATAAACAGTACTCAACAGAA-AAGGGTGTT---GTGG---TATT-----AAAA
ACAAGATAACAAGCCTCAAATAGAATCGCTTATGCGAAGTCCCACGTCATCAA-CCCAAG-----ACTAAATT-------
-------------AATGGAATCTTACACCAGTCAAACAGGAATCGCCTCATCAACAATGATTAGACAATCTGCC-GATAG
ACC------------CCTGCCATCC----CCTAAAAGAAAGTGACCTTGTAGTAACCACACTGCTTCTTTGTCTAGTATA
ACTTCCTTGTTCCCATTCCCTTCTGCCGATCAA-TTCTTTCGTTTGGTACAGCTCCTCACAGCTCCTTCTTATCTGCTCA
GCTGGAAGCTGCCTGACTCATGAATCATTGAATAAAGTCAATA-GATCTTCAAAATTTACTCAGCTGAATTTTGT-TTTT
T--AACA---GGCT---TTTTTTTTTTTTTTTTA--------------TTGCCTTTAT-CCTGCTAAAGAAGAAATATAT
TTTATTCCATA
>Condylura_cristata
AATCACCTTACACAGTTATTTAGTTCAATAAGCAGTACTCAGCAGAA-AAAGATACA-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------GTAG---TTT-ATTTATTGCCTTTTCTCCTAATAATATTTAATGTTAT-TCTGTTAAAGAAGAAATAGAT
TTTGTCCCGCA
>Uropsilus_gracilis
AATCACTTTACAGAGTTA--CAGTTCAATAAGCAGTACT-AGAAGAAAAAGAATACA-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------GTAT---TTT-ATTTATTCC---TTCTTCCAATAATATTTACTGTTAT-CCTGTTAAAGAAGAAATGGAT
TTTATTCCATA
>Homo_sapiens
AATGACTTCATGGATAGTTGCAGTACAATACATAGTACTCATCAGAA-ATGGGTGTG-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------GCCA---TTT-ACTTTTTAC--TTTCTTCTAATAATGTCAAATGCTAT-CTTGTCAAAGAAGAAATATAT
TTTATTCCATA



Bat40_LTR

>ERV54-EC_LTR
-----------------------------------------------------------------TGTTAAAAACAAGAC
AACAGGCCCAAAATGGAGTCACTTATGCT-AAGCCCCACGTCACCAAACCGAGACTTAACTTAATTACAGTTTCGGCTCT
CCCAGAAATGGAA---TCTTAAACCAGTCAATCAGGAATCACCTGATCAGCACTAGTTAGGTAATCTGCCTGATAGACCC
CTGCCATCCCCTAAAGGAAAG----TAACCTTGCAATAACCAATCC----ACTTTTTTGCCTAGTATAACTTCCTTGTTC
CTGCTCCCTTCTGCCTATAAAAGTCTTTCATTTTGTACAGCTCCTCGGAGCTCCTTTCTATCTGCTAGATTGGATGCTGC
CCAATTC--ATGAATCATTGAATAAAGCCAATAAGATCTTTAAAA-TTTACTCAGTTGAATTTTGTTTTTTAACA-----
-------------------------------------------------------------
>Canis_familiaris
TTGATAAAGA---TCAATAGTAAGGACATGGTATCCAACACTGT--AGCCATGT---G-CTC---TGCTGAAAACAAGAC
AAGAGGCCC--ACTGCAATC-CTTATATGAAAACCCCACGTCCCCGAAGCGAA-----ACTCATTTATGGTTTTGGCTCT
TACAGAAATGGAA---TCTTAGACCAGTCAATCATGAACTGCCTGAT-GGGACTAGTTAGGTAACCTGCCTGATAGGCCC
CTGCCATCCCCTAAAGGAAAGAAAGTAACTTCACAGTAACTCACCTG---ACTTTTTTCCCTGCTGTAACTTCTTTG---
--GTTCCCTTCTGCCTGTAAG----TCTCGTTTTGTACAACTCCTCGGAGCTTCTTTCTATCTGCTAGATTGGCTGCTGC
CTGATTCAAATCAATTTTTGCTCA-----AATAAA--CTTAGAAATTTTAATATGCCT--GTTTATTTCATAGCA---GT
TC---TTAGCACTTGAAATATTTACAGTCTAAATTGAGGTG-----TAAGTCTAAATACAC
>Ailuropoda_melanoleuca
TGGGTAAAGA---TCAATACTAAGGATATGCTGTCCAACACTGT--AGCCATGT---G-CTC---TGCTGAGAACAAGAC
AACAGGCCCAAATGGAAATCGCTTATATGAAAGACCCACGTCACCAAACCGAA-----ACTCAATTATGGTTTTGACTCT
TACAGAAATGGAA---TCTTACAGCAGTCATTCACG----GCCCGATCAGCACTAGTCT----ATCTGCCTGATAGACCC
CTGCCATCCCCTAAAGGAAAGAAAGTAACCTTGCAGGAAACAGCCTC---GTTTTTTTCCCTCCTGTAACTTCCT-----
-------------------------------------CAGTTGCT-GGAGCTTCT----ATCTGCTAGGTTGGCTGCTGC
CTGATTCAAATCACTTTGTACTCA-----AATAAA--CTTAAAAATCTGAATGTGCCTCAGTTTATCTCATAGCA---AT
TC---TTAGCACTTAAAATATTTACAGTCTAAGTTGAGATG-----TAAGTCCAAATACAC
>Manis_pentadactyla
TTTATAAAGGTCATCAATTCTAAGGCTGTGCTATCCAGTACTGT--AGCCATGT---G-CTC---TCTTAAAAGCAAGAC
AAAAGGCCTAAAATGGAGTTGCCTATTTG-AAGTGCCATGTCATCAAGCCAAGATTTAACTGAGCT-CAGTTTCGGCTCT
CCCAGAAATGGAC---TCGTACACCAGTCAGTCAGGAACCACCTGATCAACACTA---AGGGAATCTGCCCAATAGACCC
CTGCTATTCCCTAAAGGAAAGGAAATAACCTTGCAATAACCAGCCTG---A--TTTTTGCCTAGTATAACTTCCTTATTC
CCACTCCCTTTTGCTTATAAAAGTCTTTCCTTTTGTACAGCTCCTTGAAGTTTCT----ATCTGCTATATTGGATGTTAC
TTGATTCAAATCAATTT--------------TAAACTCTTAAAGTTTTAAGTATGCTTCAGTTTATCTTGTAACA---AT
TC---TTAGCATTTGAAATATGACCAGTCTAAATTGAGATAAGCTATAAGTCCAAATACAC
>Sus_scrofa
TTGATAA------TCAATTATAAGGATATG-TGTCCTAT-------AGCAGTAT---G-CTG---TGTTAAGAACAAGAC
AGCAGGCCCAAAATGGAGTCACTTATGCT-AAGCCCCACATTACCAAACCCAG-----ACAAACTTAAAGTTTTGACTTG
CCCAGAAGTGTAA---ACTTAAACCAATCAGTCAAGAATCACCACATCAGCACTAGTTCAATAATCTGCCTGACAGAGCC
TTTCCAGTTCCTAGAGGGAAG----TAACCTTGAAATAACCAAACTGTTTTTTTTTTTTTCTAGTATAACTTCCTTGTTT
CTGCTCCCTTCTGTCTTTAAAAGTCTTTAGTTTTGCATAACTTCTCTGAGGTCCT----TTGTGCTGTACTTGAAGCTGC
CTGATTCAAATTGTTTTTTGCTCA-----AATAAATTCTTAAAAAATTTAACATGTCTTAGTTTATCTTTTA------AT
TC---TTAGCACTTGGAATAGGA-----CTAAATTGAGATGTTT--TAAGTCTAAATACAC
>Tursiops_truncatus
TTGGTAAAGATCATAAATTCTGAGCATGTGCTATCCAATATGAT--AGCCATAT---G-CTC---TGTTAAAATTGAGAC
AACAGGCCCAAAATGGAGTCACTTATGCT-AAGCCCCATATAACCAAACCCAGACA--ACGTAATTACAATTTCAGCTTT
CCCAGAAATGGAA---TCTTAAACCAGTCAATCAGGAATAGCCTGATCAGCACTAATTAGGTAATCTGCCTCATAGACAC
CTGCCATCCCCTAAAGGAAAG----TAACCTTGCAATAACTGACCTG---CTTTTTTTTCCTAGTGTAGCTTCCCTATTT
TTGCTCCCTTCTGTCTATAAAAGTTTTTCATTTTGTATAGCTCCTCTGAGCTCCT----TTCTGCTGTACTAGCTGCTGC
CCAATTTGGATTGATTTTTGCTCA-----AATAAA--------ATTTTTAATATGCCTCAGTTTATCTTTTA------AT
TC---TTAGCATTTGAAACATGA-----CAAAATTGAGATGTATCATAAGTCCAAATACAC
>Equus_caballus
TTGGTAAATATCACCAATTCTAAAGATGTGCTGTCTAATACTGT--AGTCATGT---G-CTC---TGTTAAAAATAAGAT
GACAGGCCCCAAACGGAGCTGTTTATGTT-AAGCCCCACATCACCAAACCAAGACTTAACTTAATTACAGTTTCCACTCT
CCCAGAAATAGAA---TCTTAAACCAGTCAAGCAGGAATCACCTGATCAGCACTCGTTAGGTAATTTGTCTGATAGACTC
CTGCCATCCCTTAAAGGAAAG----TAACTGTGAAATAACCACCC-----GCTTTCTTGCTTAGCATAACTTCCTTGTTC
CTGCTCCCTTCTGCCTATAAAAGTTTCTCATTTTGTACAGCTCCTCAGAGCTCC-----ATCTGCTAGATCGGATGCTAC
CTGATTTGAATAGATTTTTGGTCA-----AATAAATTCTTAAAATATTTACTATGCCTCAGTTTACCTTTTAACA-----
-C---TTAGCACTTGAAATATGA-----CTAAATTGAGATGTGCTGTAAGTCCAAATACAC
>Ceratotherium_simum
TTGGTAAATATCATCAATTCTAAGGATGTGCTGTCCAATACTGT--AGCCATGT---G-CTC---CGTTAAAAATAAGAC
---AGGCCCAAATTGGAGCTGCTTATGCT-AAGCCCCACATCACCACACCAAG-----ACTTGGTTACAGTTTCCACTCT
CCCAGAAATAGAA---TCTTAAAC----CAATCAGGAATCACCTGATCAGCACTAGTTAGGTAATCTGCCTGATAGACTC
CTGCCATCCCCTAAAGGAAAG----TGACCTTGCAATAACCGCCC-----ATTTTTTTGCCTAGTAGAACTTCCTTGTTC
C-ACTCCCTTCTGCCTATAAAAGTCTTTCATTTTGTACAGCTCCTCAGAGCTCCTTTCTATCTGCTAGATTGGATGCTGC
CCAATTTGAATAGATTTTTGCTCG-----AATAAACTCTTAAAATATTTACTATGCCTCAGTTTATTTTTTAACA---GT
TC---TTAGCTCTTGAAATATGA-----CTAAATTGAGATGAGC--TAAGTCCAAATACAC
>Myotis_myotis
TTGATAAAGATCAT-ACCATTAAGGATATGCTGTCTAATACTGT--AGTTGTGT---G-CTT---TGTT-AAAAC-AGAC
AACAGACCCCAAAAGGAGTCACTTATACT-AAGTCCCACATTACCAGACTGAG---------AATTACAGTTTCTGTCCT
TCCAGAAATGGAA---TCTTATACCAGTCAACCGGGAATCAACTGATCAGCACTGGTTAAGTAGTCTGCCTGATAGACAC
CTGCTACCCCT--AAAGAAAG----TAACCTTACAATAACCAACCC----AATTTTTTGCCTAGTGTAACTTTTTTGATC
CCACGCTCTTCTGCCTATAAAAATCTTTCACTTTATACAGCTCCTCAGAGCTCCT----GTTGGCTAGATTGGATGTTGC
CTAATTCAAATTTGTTTTTGCTTA-----AATAAACTCTTAAAGTTTTTAATATGCCTCAG-TTATCTTGTAACA---GT
TC---TCAGCACTTGAAATATGGCCAGTCTAAATTGAGATGTGCTGTACATCCAAGTGCAC
>Rousettus_aegyptiacus
CTGATAAAGATCATCAATACCAAAGAAGTACTATCTAATACTGA--AGT-GTGT---G-CTC---TGTT-AAAACAAGAG
AACGGGCTTCAAATGGAGTCGCTTATGCT-AAACTTTACATCAGCAAACTGAG-----ACTTAGTTACAGTTTCTGTTCT
CCCAGCAATGGAATCTTCTTCCATCAGTCAATCAGGAATCAAATGATCAGCACTAGTTAAGTAATCCCCCTGATAGACCT
TTGCCTTCCCTCAAAGGAAAG----AAACTTTGCAATAACCAATCTG---A-TTTTTGGCCTAATATAACTTCCTTGTTC
CCACTATCTTCTGCCTATAAAAGTCTTTCACATTGTACAGCTCCTCAGGGGCCCT----ATCTACTAAACTGGATGCTGC
TTGATTCAAGTGGATTTCTGCTAG-----AATAAACTTTTAAAAGTTGTAATATGCCTCAATTTACCTTGTAATA---GT
TC---TTATCACTTTAAATATGACCAGTCTAAATTGAAATATGCTGTAAATCCAAATACAG
>Condylura_cristata
CTGATAAACATCATCATTTCTAATGATA-------CAAAACGGT--AGCCATAT---GGCTC------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----TTAGCACTTGAAATATGAGTG--CTAAATTGAGATGTTCTGAGTATCCAAAGGCAC
>Sorex_araneus
CTAATAAGAATAATCAGTTTTAAGGCTATGCTATCCCAAACTATGAAACTGCAG---G-ATT------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------CAGCACTTGAAATAGGAATCCTCTAAATTGAGCTGTACCAGAAGTCTAAATGCAG
>Homo_sapiens
CTCATAAAGATTGTTTGTTCTAAGAGTGTGCCATTCAATACTGT--AGCCATGT---GCCTC------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----TTAGCACTTTACATATGA-----CTAAATTGAGATGGGCTGTAAATCCAAATACAC



Bat48_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--TTTTTCCAGCTTTATTGAGGTAT----AATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTG
ATATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTAC---CATTTT
TTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAA---ATTTCAAGTATACAATACAGTATTATTAACTATAG
TCACCATGCTGTACATTAGATCTCCAGAACTTATTCATCCTGCATAACTGAAACTTTGTACCCTTTGACCAACATCTCCC
CATTTCCC------------------------------------------------------------------------
------------
>Equus_caballus
AGATGATATATTGCC-AAAGTTTTTAACTTTAGTTGCAACATTGTATGAT----T---ATAACATTC----TTTTT--T-
--------------TATTGAGATATTGAGAATTGACATAT-AACCTTATATTAGTTTCAGGGGTACTACGTAATAATTTG
ATATTTGTATACACTATGCAATGATCACCACAATAAGTCTAGTTACC--ATCTATCACTGTACATAGTTACAAAAGCTTT
TTTTCTTGTATTGAGACCTTTTAAGATTTACTCTCATAGCAC---CTTTCAAATATGCCATACAGTATTAATAACTATAG
TCATCATGCTGTACTTTACATCCTCATGACCTATTTATTTT--ATGACTGGGAGTTCGTACCTTTTGACCACCTTAACCC
-----------ATGACATTC--TTTTTT---ATGGAGGATGA-----------TTTTTGTAATTGAAATGGGTTTTATAT
GTAAAATCTAGA
>Ceratotherium_simum
AAATGGTATATTGCC-AAAGTTT-----TTTAGTTGCAACTTTGTATAAT----T---ATAACATTC----TTTTT--T-
-------------GAATTGAGATAT----AATTGACATAT-AACTTTATATTAGTTTCAGGTATACTGCATAATAATTTG
ATATTTGTATACGCTAGGAAGTGATCACCACAATAAGTCTAGTTACC--ATCTGTCACCATATGTAGTTACAAAAACTTT
TTTTCTTGTAATGAGACCTTTTAAGATTTACTCTCTTAGCAA---CTTTCAAATATGCCATACAGTATTATTAGCTGTAA
TCACCATGCGGTACATTACATCCTCATGACTTACTTATTTT--ATAACTGGGAGTTTATACCTTTTGACCCCCATGACCT
-----------ATAACATTC--TTTTTT---ATGGAGGATGA----------TGTTTTGTAATTGAAATGGGTTTTATTT
TAAAAATCTAGA
>Myotis_myotis
AGATGATATATTGCCAAAAGTTTTTAACTTTAATTGCAACCTTGTATGAT----T---CTAACATTCTTTAAGTTT--T-
----------GTTAAATTGAGGTAT----AATTGACAAGT-AACTTTATATTAGTTTCAGGCATACAACGTAATGATTCA
ATATTTGTATATACTACAAAATGATCACCACAGTAAGTCTAGTTAAC--ATCTGTCACCATACATAGTAACAAACATTTT
TTT-CTTACGAGGAGA--TTTTAACATTTACTCTCTTAGAAT---TTTTCAAATATGCTACATAGTGTTATTAACCATAG
TCA-----CTGTATATAATATCTTCATGACTTATTTACTTT--AAAACTTGGAGTTTGTATCTTTTGACTCCCTTCACCC
-----------ATAACATTCTTTTTTTT---ATGGAGGATGA--------TTTTTTTCATAATTGAAACA----TTATTT
TTAAAATCTAGA
>Rousettus_aegyptiacus
AAATGATACATTGCTGAAAGGTTTTAATTTTAGTTATAACATTGTATAAT----T---ATAACATT--------------
---------------------------------GACAAAT-AACTTTATGTTAGTTTAAGGTGTACAATATAATGATTTG
ATAATTGTATACACTATGAAATGCTCACCATAATAAGTCTAGTTACC--ATCTGTCACCATATGTAGTTACAAAAATTTT
TTTTCTCATGATGAGACCTTTTAAGATTTACTCTCTTAGCAACAGCTTGCAAATATGTCAAATGGTATTATTAACTATAG
TCACCACGCTGTACATTACATCCCCATGACTTATTTATTAT--ATAAGTAGAAGTTTGTGCCTTTTGACC-CCTTCACCC
-----------ATAATATT---TTTCTT---ATGACGGATGA--------TTTTTTTAGTAATTTAAGTGGGTTTTATTT
TTAAAATCTAGA
>Canis_familiaris
AAATGATACATTGCCAGAAGTTTTTAATTTTAGTTGCAACATTATATAGT----T---ACAACA-------TTTTT--A-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------ATGGATGATGA-----------GTTTTATAATTGAAAGAGGTTTTACTA
TTAAAATCTAGA
>Felis_catus
AAATGATACATTGCCATAAACTTCTAATTTTCATTGCAACATTATATGAT----T---ATAACATTC----TTTCT--T-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------ATGGAGGTTGA-----------ATTTTATAAGTGAATGGGGTTTTACTA
TTAAAATCTAGT
>Manis_javanica
AAATAATATTTTACTAAAAGTTGTTAATTTTAGTTGCAACATTGTATGAG----T---ATAACA-------TTCTTTAA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------ATGGAGGATGAT----------TTTTTGTAATTGAAATGGGTTTAATTT
TTTGAATCTAGA
>Sus_scrofa
AAATGATATACTGTC-AAGATTTTTAATTTTAATTGCAACATTGCAGGAT----T---GTAACATTCTT--TTTTA--T-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------ATATAAGATGA---------TTATTTTGTAATTGAAATAGATTG---TT
TAAAATTATAGA
>Bos_taurus
AAGTGATATTTTGCC-AAAGTTTTTAATTTTAATTGCAACATTGCATGAT----T---ATAACATTCT---TTTTT--T-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------ATGGAGGATGA---------TTTTTTTGT-ATTGAAATGGGTTTGATTT
TTAAATTATACA
>Condylura_cristata
AAATGACATATTACTGAGAGTTTTTAATATTAGTTGCAAAATTGTACTAT----T---ATAATT-------TTTTC--C-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------ATGGAGGATGA---------GTTAAATGTTGTTAAAAGGGGTTTTATTT
TTAAAATCTAGA
>Erinaceus_europaeus
AAATGCTGTATTG--------------------TTGCAACATTGTATGAT----T---ACAACA--------TTTT--T-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------ATGGAGGATTCTTTTTTTTTTTTTTTAATAATTGACA--------GTTT
TAAAAATCTAGA
>Homo_sapiens
AGATAATATATTGCC-AAAATTCTTGATTTTAGTTGCAACGTTATATGACTGTAT---GTAGCATCG----TTTGT--T-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------ATGGAAGATGA----------TTTTATGTAATTGA-----GTTTTATTT
TTAAAATCTGGA



Bat52_LINE

>L1MA9_3END
-------------------------------------------------------------------------------T
TTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATATACG
TATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTAC----------------
--CATTTTTTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAAATTTCAAGTATACAATACA-GTATTATTAA
CTATAGTCACCATGCTGTACATTAGATCTCCAGAACTTATTCATCCTGCATAACTGAAACTTTGTACCCTTTGACCAACA
TCTCCCCATTTCCCCCAC------CCCCCAGCCCCTGGCAACCACCATTCTACTCTCTGCTTCTATGAGTTTG-------
---------------ACTTTTTTAGATTCCACATATAAGTGAGATCATGCAGTATTTGTCTTTCTGTGCCTGGCTTATTT
CACTTAGCATAATGTCCTCCAGGTTCATCCATGTTGTCACAAATGGCAGGATTTCCT-TCTTTTTTAAGGCTGAATAATA
TTCCATT--------------GTGTATAT------------------------------------ATACCACATTTTCTT
TATCCATTCATCCGTCGATGGACACTTAGGTTGNTTCCATATCTTGGCTATTGTGAATAATGCTGCAATGAACATGGGAG
TGCAGATATCTCTTCGAGATACTGATTTCATTTCCTTTGGATATATACCCAGAAGTGGGATTGCTGGATCATATGGTAGT
TCTATTTTTAATTTTTTGAGGAACCTCCATACTGTTTTCCATAATGGCTGTACCAATT-TACATTCCCACCAACAGTGTA
CAAGGGTTCCCTTTTCTCCACATCCTCGCCAACACTTGTTATCTTCTGTCTTTTTGAT-AATAGCCATT-----------
--------------------------------------------------------------------------------
-------
>Equus_caballus
CATACCTACTGCTGGTCATTT-GCGTCTAT---CAACTTTCAAAGTATGT--CCCA---TCTCTTTATTTAGTTT-----
TTTTCCAGTTTTATTGAGGAATAATTGACATA-CAACACCGTATAAGTTTAACGTGGGCAGCATGATGGTTTGATTTA--
CATATGTGGTGAAATGATTGCCACAATAGGTTTAGTTAAC--ATCCATCATCTCATATAGATACAGTAAAAAGAAAAG-A
AAAAAAATTTTCCTTGTGATGAGAACTCTTAGGATCTACTCTCTTAACAATTTTCCTGTATATCATACAGGGAACGTTAG
CTACAGTCCTCATGTTGTACATTACATCCCTAGTACTTATTTATCTT--ATAACTGGTAGTTTGTACCTTGGGACCACCT
TC-CTTCAATT-CTCCTTACCTCACCCCCTGTCTCTGGTAACCACAATCCTGATCTCTTTTTCTATGAGTTTGGTGTTTT
TTTGTTTTGTTTA------TTTTAGATTCCACATATAAGTGAGATCATACAGTATTTGTCTTTCTCTGTCTGACTTATTT
CACTTAGCATAATGCCTTCAAGGTCCATCCATGTCGTCACAAGTGGTAGGATCTCCTAA-TTTTTTATAGCTAAATCATA
TTCCATT-TATATAC--------------------------------------------------TTACCACAACTGCTG
AATGCATTCATTCATTGACGTACGTGTAGCTTGTTGCCATGTCTTGGCTAGTGTAAACAATGCTGCTATGTGCATACGGG
TGCAGATA-------------------TTGTTTTCTTTGGACATATTTCCAGATGTGAAATTGCTGGATCATA-GGTATT
TCCTTTTTTAATTTTTTGAGGAAGCTCCATACTGTTTTCCAGAGTGGCTGCACCAATT-TACAGTCCCAATAACTGTGCA
CAAAGGTTCCCCGTTTTCCAGACCCACACCAGCATTTGTTATCTCTTGTCTTTTTGATCTA-----------TCACTCTA
TCTGAACA---AACTACACAGGTCTTAGCCACCA-------TCA-------TCTTT--TTCTTG---------GAGTAAC
AG-AAAT
>Ceratotherium_simum
CGTCCCTACTGCTTGTCTTTTTCAGTCTAT---CAATTTTCAAAGTAAAT--CCCA---TCTCTTTATTTAATTT-----
TTTTCCAGTTTTATTGAGAAATAGTTGACATA-CATCACTGTATAAGTTGACGGTGTATAGCATGATGGTTTGATTTA--
CATATATTGTGAAATGATTGCCACAATAGGTTTAGTTAAC--ATCTGTCACCTCATATAGATACAGTAAAAAGAAAAGAA
AAAAAAATTCTCCGTGTGATCAGAACTCTTAGGATCTACTCTCTTAACAGCTTTCCTGTACATCATACA-GCCATGTTAG
TTACAGCCATCATGTTGTACATTACATCCCTAGTACTTATTTGTCTT--ATAACTGATAGTTTGTACCTTGAGACCACCT
TA-TTTCAATTCCCCCTTCCCTCACCCCGAGCCTCTGGTAACCACAAATCTGATCTC-TTTTCTATGAGTTTGGTGTTTT
TTTATTTTGTTTT------TTTTAGATTCCACATATAAGTGAGATCATACAGTAATTTTCTTTCTTTTTCTGACTTATTT
CACTTAGCATAATGCCTTCAAGATCCATCCATGTTGTTGCAAATGGTAGGATTTCCCCA-TTTTTTATGGCTGAATAATA
TTCCATA-TATATAT----------------------------------------------ACACATACCACAAATTCTC
AATGCATTCATTCATCAATGTATATTTAGGTTGTTTCCATTTCCTGGCTAGTGTAAATAATGCTGCTATGAGCATGGAGG
TGCAGATATCTTTTCGAGTTAG-TGTTTTGTTTTCTCTGGATATATTCCCAGAAGTGAAATTTCTGGATCATATGGTAGT
TCTATTTTTAATTTTTTGAGGAACCTCCACACTGTTTTCCATAGTGGCTGCACCAATT-TACAATCCCACTAATAGTGCA
CAAAGTTTCCCTTTTCTCCACATCCACACCTGTATTTGTTATCTCTTGTCTTTTTGATCCA-----------TTGCTTTA
TCTAAACT---AAATACTCTAGTCCTAACCACTA-------TCA-------TCTTT--TTCTTG---------GACTGAC
AA-AACA
>Myotis_myotis
CATCCCTACTGCTGTTCATTTTAAATCCAC---CAACTTTTAAAGTATAT--TTCA---CCTATTT-CTCCCCCC-----
ACCCCCAGTTTTATTGTGAAATAATTGACATA-CATCAATGTATAAGTTTATGGTATACAACATGATGGTTTGATT----
----TATTGTGAAATGATTACCATAGTAATTTTAGTTAAT--ATCAGTCATCTCATGTAGATACAGTAAAAAGAAAAG--
--TGAATTTCTTCTTCTAATGGGAACTTTTAGGATCTACTCCCTTAACAAGTTTTCTGTATATTATTCA-GCAGTGTTAA
GTATAGTCGGCATGCGGTATGTTACATCCCTAGTATTTATTTATCTT--ATAACTGGAAGTTTGTAACTCCTAACCATTC
TC-CTCCAATTCCCTTTCCCTCTACCTCTTGCCTCTGGTAATCAAAAGTCTAATCTCTTTTTCTGTGCAATTGGTGGGGT
GTTTTTATGGTGTGTGTTTTTTGTGATTTCTCTTTTAGAT-------TACAGTATTTGTATTTCTCTGTCTGACTTATTT
TACTTAGTATAATGTCTTTAAGGTCCATC-ATGATGTTGTAAATGGCAGGATTTCCTCA-TATTCTGTGACTGAATAATA
CTTAATAGCATGTG------------------------------------------------CATATA-CACAACCTCTG
TATCTATTCATCCACGAATGAACACTTAGGTTGTTTTTACGTCTTGGGTATTACAAATAATGCTGTGATAAACATGGGGG
TTCAGATATCTTTTCAAGTTAGTGTTTTTGTTTCCTTTAAATATATTCCCAGAAATAGAATTGCTGGCTCACATATTAGT
TCTATTTTTAATTTTTTGAGTAACTTTCATACTATTTTCCCTAGTGGCTGCACCGGTT-TAAATTCCTACCAACAGTGCA
CAAGGGCTCCCTTTTCTCCACATCCTAGCCAGAATTTGCTAACTCTTGTC-TTTGGAGCCA-----------TCTTTCCG
TCTTAACT---GGATTCTCTAGTTCTAACTACCA-------TCA-------TCTTT--TTCTTT---------GACTGTC
AAAAACA
>Rousettus_aegyptiacus
CATCCCTACTGCTGCTCATTTTCAGTCCAT---CGACTTTCAAAGTGTAT--TCTA---TCTCCTCCCCTGCCCC---CA
CCACCCAGTATTGTTGTGGAATAATTGACATA-CATCATTGTATAAGTTGAAGGTATGCAGTATGATGATTTGATTTA--
TATGTATTATGAAATGATTACCACAATAGGTTTAGTTAAC--ATCCATCATCTCATATAGATACAATAAAAACAAAG--A
AAAAAATTTCTCCTTTTGATGAGA---CTTAGGATCTACTTCCTTAACAAGTTTCCTATATGTTATAGA-GTGATGTCAA
CCATAGTCATCCCAATGTACATCACGTCCCTAGTACTTATTCATAAC---------GAAGCTTGTACGTTGAGACCACCT
TC-CTCCAATCCCCCCTCCCTCCACCTCTCACCCCTGGTAACCACAAATCTGATCTCTTTTCCTGTGAGTTTGATGGGAT
GTTTCTTTGTCGT--------------------TTTAGGT-------TATAGTATTTATCTTTCTCTGTCTGATTTACTT
CACTTAGCATAATGCCTTCAAGGGCCATC---ATTGTTGTAAATGGCAGGATTTCCTCATTTTTTTATGGCTGAATAGTA
TTCTGTTGTGTGTATGTGTGCGTGTATATACACACACACACACACACACACACACACACACACACACACCACAACTCCTG
TATCCATTTA-----------GCACTTAGTTTGTTTTCATGTCTTGGCTTCTATAAATAA---TTTAATAAGTACAGAGG
TGGAGATATCTTTTCAAGTTAGTATTTTTGTTTCCTTTGAATAAATTTCCAGAAGTGGAATTTCTGTGTCATAAAGTAAT
TCTGTTTT---CTTTTTAATTAAGTT---TATTGGGTT-AACATTGGTTAATACAATTATATAATTTT------------
CAGGTGTACCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----------NNNNNNNN
NNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNN-------NNN-------NNNNNNNNNNNNN---------NNNNNNN
NNNNNNN
>Canis_familiaris
CATGCCTATGTGGAGTCATTT-CAATCCAT---TGACTTTCAAAGTACAC--CCCA------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------TCTCTTTG
TCTTAGCT---GAATACCCTTCTCCTGATCACTA-------TCA-------TCTTTTATTCTTG---------GACCACC
AA-AAAT
>Ailuropoda_melanoleuca
CATCCCTACTGGTAGCCATTT-CAATCCAC---TGACTTTCAAAGTATAG--CCCA------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------TCTCTTTA
TTTTAACT---AAATACCCTTCTCCTGACCACCA-------TCA-------TCTTT--TTTTTGCGGGGGGGTGGCTACC
AA-AAAT
>Manis_pentadactyla
TGTCCCTGCCCATGGCCATTTGGCATC------CGGCTTTCAAAGTGCCT--CCCA------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------TCTCTTCG
TTGTCCCT---GGACACCCTGGCGCTAACCACCA-------TCA-------CCTTT--TTCTT----------GATCAAC
AA-AAAT
>Sus_scrofa
TGTCTCTAGCACTTGTCATTTTCAATCCAT----AACATTAAAAGTGCAT--CCCA------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------TTTCTTTA
T-----CT---TAATACCCTAGTCCTGACCACCATCTGCCTTCAAATTTTCTCTTT--TTCTTA---------GACTATC
AA-AAAG
>Tursiops_truncatus
CGTCTGCACCACTGGTCCTTTTCAGTCCTT---CAACTTTCAAAGTATAT--CCCA------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------TCTGTTTA
TCTTAACT---GAATACCCTAGTCCTAACCACCAACTCCTTTCACCTTAT-TTTCT--TTCTTG---------GACCACC
GA-ATCC
>Condylura_cristata
CAGCCCTGTTGCTGGACATTTTCTGTTTAT---CAACTTTCATTGGATGT--TCTA------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------TCCCCTTT
TCTTAACT---GAACACCCTCATCCTAACACCCA-------CC--------TCTTT--TATTTACCCCT----GAGTGCC
AA-GAAA
>Sorex_araneus
CATGCAGACCACTGGCCATTTTCAACCCCTGCCTAAACTTCAAAGTATAAAGTCCA------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------ACTCTTTA
TCTACACT---GAATATCCTCGTCCTTACCACCA-------TTA-------TCTTC---CCTACTA-------GATTGC-
---TAAT
>Homo_sapiens
CACCTCTACTGCTACTTATTTTGCATCCAT---CAACTTTCAAGCTATAT--CCTG------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------TCTA----
TCTTAATG---GAATACTCTTGTCCTAACCACCA-------TCA-------TGTTT--TCCTTG---------GACTGCC
AA-AAAT



Bat53_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---TTTTT-----CCAGCTTT---ATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATG
TTTTGATATACGTATACATTGTGAAATGATTACCA------------------CAA-----TCAAGCTAATTAAC---AT
ATCCATCACCTCACATAGTTACCATTTTTTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAG--------CAAAT
TTCAAGTATACAA-TACAGTATTATTAACTATAGTCACCATGCTGTACATTAGATCTCCAGAACTT----ATTCATCCTG
CATAACTGAAACTTTGTACCCTTTGACCAACATCTCCCCATTT-----CCCCCACCCCCCAGCCCCTGGCAACCACCATT
CTACTCTCTGCTTCTATGAGTTTGAC-------------------TTTTTTAGATTCCACATATAAGTGAGATCATGCAG
TATTTGTCTTTCTGTGCCTGGCTTATTTCACTTAGCATAATGTCCTCCAGGTTCATCCATGTTGTCACAAATGGCAGG--
--ATTTCCTTCTTTTTTAAGGCTGAATAATATTCCATTGTGTATATA---------------------------------
-TACCACATTTTCTTTATCCATTCATCCGTCGATGGACACT------TAGGTTGNTTCCATATCTTGGCTATTGTGAATA
ATGCTGCAATGAACATGGGAGTGCAGATATCTCTTCGAGATACTGATTTCATTTCCTTTGGATATATACCCAGAAGTGGG
ATTGCTGGATCATATGGTAGTTCTATTTTTAATTTTTTGAGGAA--CCTCCATACTGTTTTCCATAATGGCTGTACCAAT
TTACATTCCCACCAACA---------------------------------------------------------------
--------
>Myotis_myotis
TTTCTG----------GCTCA-TTTAAAACATGTTCA-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------AAGGGTTGTTGTTTTTTTACATAT--TTAT---CTTCATTTTATTC----------------
-----TTTAAAAACTCTTTTT---ATTAAGATATGTTTGAGCTAT-AGCACTGGGTAAGTGTAAGGTGTGCAGCATGTTG
ATTTGGTACA--TTTGTGTGGCAGTCTGATCGCTA------------------TTG-----TCATGTTAGCTCAC----A
CTTCTCCGTGTCACAGAACTG----TTTCCTTTTTGTGGTGGGAATAATGCAGGTCTGGTCTCTCAG--------CAAGT
TT-ATGATTAAGA-CCTAGTCTTGTTGTCTAACATCATTAGACTGGGCACTAGATCTCCAGGACTT--ACTTATCTACTC
CTTTGTTACACGTGTGCACCC-TTAAAAACAATCTCTGCTATT---------CCTACTCCTGCCCCTGGGAACCACCATT
TTACTCTACGTCT--ACCCGCTTGAC-------------------TTTTTTAGATTCCACATATAAGCGATATCGTACAG
TATTTGTCTTT-TCTCTCTGAGTTATCTCACTTAGCGTAATGCCCTCAAAGTTCATCCATGTTGTTGCGAATGGCAGG--
--GTTTCCTTCTTTCTCGTGGGTAAATGATACTC----GTGTATAAA---------------------------------
-----ATGCCATCTTTCTCTGTTCACCTGCTGATGG-CACTTACTAGTAGGTTGTTTTCATGTCTTGGCTATTGTGAATG
AAGCTACAGTGAACATG-GAGTGCAGGTATCTCCCCCATATTCTGTTTTCATTTCCTTTGGGT-TATACCCAGAAACAGA
ATTGCTGGACCATATGGTAGTTCTATGTTTAATTATTTGAGGAA--TCTCCTCACTGTTTTCCATAGCGAGTGAACCACT
TGCCATTC------------CCTCATTTTAGTT---CTATAACATCTCTGTGGAATCAGTATTAGTAATGCAGATGATAA
CAGCTGAT
>Rousettus_aegyptiacus
CTCCTGTCAGACGTGGGTTCG-TTTAAAATATGCTCG-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AAGCTCTCG-------GGCGTCA--TTAT---CCTCACTTTACTT---CCCTCCCCCACCC
CCCCCCCCAAAAAAAAAATTT---ATCGAAATACACTTGACGTGT-AACACCGTGTACGTTTGCA------CGCGCGGGG
ATCCA--ACAGGTTTCTACTGCAGTACGATCGCCA------------------CCC-----CAGCAGCAGCTCCCGGGGG
GTCTACCACCTCCCATAATCATCTTCCCTTTTTTCATGGCGAGAATAATGAAGGTCCAGCC----AG--------TAAGT
TTGATGACGGCGG-TACGGTATCGTTGTCTGCAGTCACCGTGCTGTACGCTAGCTCTCCGGGACTTGAACTGACCTACTT
----GTTGCCAGTCGGAATCC-TTG---AATGTCTCTCCTATCCCCCGCCCCGCCACCCTGGCCGCTGGCAACCACCATT
TTACTCTCCATTTTCACCAGTTTGGC-----------------TTTTTTTCAGAGTCCTCGCAGAAGCACTATCGTAGGG
TGTTTGTCTCTTCCTGTCTG-TCCCCGTTGCTTAGCATAACGCCCTCTAA----ATCCGAAATGT----GATTGCACGAG
ATGTTCCCTTCCTCCTCCTGGCTGGATAACACGCACATCTGCATACGTC----------------------TGTATGCAC
ATTTCACACCTTCCTTATCCACTCACCTGCTGATGGGCACT------TAGATCGGTTCC-TACCTCGGCTGCTGTGAATG
GTGCGGCAGTGAGTATGGGGTTTCTGCTATCTCGTCAATATCCTGTTTTTATTCGCC-------TATACCCGGAGGTGGA
ACTGCTAGATCATATGTTAGTTCTACTTTTAACTTTTTTAAGAC--GCCCCATGCTGTCTTCCATTGAGGCCGAACCGCT
TCACATTC------------CCTCATTTGATTC---TTATACCATCTCCATGGAAGTGATTTTAGTAATGCGATCGACAA
TAGTCAAT
>Condylura_cristata
TTTCAGTACAGCCTAGCTTCC-TTTGAAAAATGTTCA-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AAGTTTTGT-------GAC-TTT--GAA-------CATCTTATTC----------------
-----ACTGAGGTACAATTTTTTCATTGAGCTCTAATTGCCCTGT-AACATTATGTAAGTTCAAAGTATACAAAGTGCCA
ATTTGATCCATTTTTATATTGAAACGTGATTGTCA------------------TTGTAGGATAGCATTAGCTAGC-----
-------------------------TGATTATTGTATGAT---AGTAAAGAAAATCTGGCCTCTTAGGATGTGCAGATGT
GCAAAGTTTATAA-ATCAGTGTTGTTGTCTGTGATACCCAGACTGTACATTAGCACTTCAGGACTT----GTGTTTACTG
----ATTACAAGTGTGTGTTC-TTA---AACATCTCCTTAATT-----CTCCCACACTCCAACCCCTGCTAACCATCATT
CTACTCCCTGCTTTAACAACTTTAGTT----------------TTTTTTTTAGATGTTACAGATAAGTGAGATCACACAG
AAGTTGTCTGT----ATCTGATTTACCTCACTTAGCACCATGTCCTCAAGGTCCATTCGTGTTGTTAATAATGGCATG--
--GCTTC--TCTTTTTCGGGGCTGAATAATATTCCACTGTGTGTACAACATGGTATTGTACATACTTATGGAACATCAAT
ATGC-GTCTCATCTTTACCCACTCACTCATTGACAAATATT------TAGGTTGTTTTCAGATCTAGGCTGTTTTGAATC
ATGTGACAACGGACTTGGGAGTGCCACTATATCTTCCATTTTCTA-TTTCATTTCTGTTGGGAAAACACCCAGAAGTGGG
ATGTTTGGGTCCAATGGTGGTTTTATGTTTAATTTTTTGAGGAAACTCTCTATGGTTTTTTCCATAGTGTCTTAACCAAT
TTATATTC------------CCTCA-TTTATTT---TTATAATATCCCTCTGGGATGGGTATTAGCAAAGTGGAGAACAA
---CCAAC
>Uropsilus_gracilis
TTTCTGTCCAGTCTAGGTTCC-TTTGAAACATGTTCA-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AAGTTCTTT-------GACATATATTTAT---CCTCATCTTATTC----------------
-----AATATAATTAATCTGTAACATT-ATGTATAATTAATCTGT-AACATTATGTAAGCTCAAAACTTATGACATGTCG
ATTCCATCCATGTATATATTGCAGTGGGATTGTTGACCGCCATGGGATTGTCCTTG-----TAGCACTAGCTAGC---AC
CTCCATTACAGCACTTGACACTCATTTCTTTTTTTATTATGGGAATAAAGAAGACTTAGCCTCTTAG--------CATGT
CTGGAGTATGTGATTACAACAGTGTAGTCTGTAATCCCCATGCCATGCATCAATACTTCAGGACCT----CTGTTTACTG
----ATTAAAAATGTGTACC--TTA---AACATCTCCTCAATC-----GCCCCACACCCCAACCCCTGGTAACCACCACT
CCACTCTCTGTTTTAAGAACTTTAGCTTTTTAACAACTTTAGCTTTTTTTTTTATTCCACATGGGAG----ATCACACAA
CCATTGTTTTT----GTCTGATTTATCTCACTGAGC------------------ACCCACATTGTTGATGATGGCAGG--
---ATTCCTTCTTTTTCATGGCTGAATAATATTCCGTGGTGTGTATACTATAGAACTAAACATACTATTGGAACATTCAG
GTATTATCACATCTTTATCAACTCATCCAGTGGCTGATGCT------TGGCTTGGCTTCAGATCTAGGCTATTTTGAAGA
AGGCTACCACAAACATGAGAGTACAGCTAGCTCTTCTATTTTCTAAT----TTTTGAGGGGCAACACACCCAAAAGTAGG
GCAGTTGGGTCAGCTGGTGGTCCTATTTTTAATTTTCTGAAG-------------TGTCTTCCA-AGTGTCTCAACCAAT
TTACATTC------------CCTCA-TTTACTT---TTATCATATTCCTGTGGGATGGGT-TTCGTAATGTGAATGATAA
CAGCTCAC
>Canis_familiaris
TCTCCATCAAACATAGGCTCA-TTTCAA-CACGTTT--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------GAAG-TCCTT-------GATGTAT--TTAT--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------CCTCATCTTACTC---TTATAATATCCATACGGAATTGTTATTAGTCATGTGGATGGTAA
TAGCTAAT
>Felis_catus
TTTGCATCAGACATAGGCTCA-TTTCAA-CACGTTTT-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------AAAG-CCCTT-------GGTGTAT--TTAT--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------CCTCATTTTAT-----TCATAATACCCCTAGGGAATTGTTCTGAGTCATGTAAATGCCAA
GAGCTAAT
>Phataginus_tricuspis
TTTCTGTTGGACATAGGCTCA-TTTAAAGCATGTTT--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------AAAGTTCCTT-------GGCATAT--TTAT--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------CCTCATTTTATTC---TGATAATATCCCTCTGGGATCGGCATTAATAATGTGGATAATTA
TAACTAAT
>Sus_scrofa
TCTCTGTCAAACATAGGCTCA-TTTAAAGCATGTTTA-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AAATTCTTT-------GACATAT--TTAT--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------CCTCATTTGATTC---TTATAATATCCCTGTGGGATTGGTATTAGGAATGTGGATGATAA
AAGCTAAT
>Bos_taurus
TTTCTGTCAAACATAGGCCCATTTTAAAACATGTTTA-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------CAATTCTTT-------GGCATAT--TTAT--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------CCTCATTTTATTC---TGATAATATCCCTGTGGAATTGGTATTAAGAATGCAGACGATAA
TGGCTAAT
>Equus_caballus
TTTCTGCGAGACGTAAGTTCA-TCTAAAACACATTCA-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AATTTCCTT-------GACATAT--GTAA--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------CTTCATTTTATTT---TTATGATATCCCCATAGAATGAGTGTTAGTGATGTGGATGATAA
TAGCTCAT
>Ceratotherium_simum
TTTCTGTCAGATATAAGTTCG-TTTAAAACAAGTTCA-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AAGTTCCTT-------GACATAT--GCAT--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------CCTCAATTTATTC---TTATGATATCCCCATGGAATGGGTATTAGTGAAGTGGATGATAA
TAGCTAAT
>Homo_sapiens
TCTTTGTCAGGCATAGGTTCA-TTTAAAACATGTTCAGCCGGGCGCGGTGGCTTATGCCTGTAATCCCAGCACTTTGGGA
GGCCGAGGCGGGCAGATCACAAGGTCAATAGATCGAGACCATCCTGGCTAACATGGTGAAACCCCACCTCTACTAAAAAT
ACAAAAAATTAGCCAGGTGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAAC
CTGGGAGGCGGAGCTTGCAGTGAGCTGAGATCCACCCCACTGCACTTCAGCCTGGGTGAGAGTGCGAGACTCCATCTCAA
AAAAAAAAAAAATATTCCAAAGTTTGTT-------GACATAT--TCAT--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------CCTTATTTTATTC---TTAT---ATTTCTATGGAGTTGGTATTAGTCATGTGGATAAGAA
TAGCTAAT



Bat54_LINE

>L1MA9_3END
------------------------------------------------------------------------------TT
AATATCCAAAATATATAAGGAACTCAAACAACTCAATAGCAAAAAAACAAAT------------AACCCGATTAAAAAAT
GGGCAAAGGACC-TGAATAGACATTTCTCA----AAAGAAGACATACAAATGGCCAACAGGTATATGAAAAGATGCTCAA
CATCA-CTAATCATCAGGGAAATGCAAATCAAAACCACAATGAGATATCACCTCACACCTGTTAGAATGGCTATTATCAA
AAAGACAGAAGATAACAAGTGTTGGCGAGGATGTGGAGAAAAGGGAACCCTTGTACACTGTTGGTGGGAATGTAAA-TTG
GTACAGCCATTATGGAAAACAGTATGGAGGTTCCTCAAAAAATTAAAAATAGAACTACCATATGATCCAG-CAATCCCAC
TTCTGGGTATATATCCAAAGGAAATGAAATCAGTATCTCGAAGAGATATCTGCACTCCCATGTTCATTGCAGCATTATTC
ACAATAGCCAAGATATGGAANCAACCTAAGTGTCCATCGACGGATGAATGGA-----TAAAGA------------AAATG
TG-GTATATATACACAATGGAATATTATTCAGCC-TTAAAAAAGAAGGAAATCCTGCCATTTGTGACAACATGGATGAAC
CTGGAGGACATTATGCTAAGTGAAATAAGCCAGGCACAGAAAGACAAATACTGCATGATCTCACTTATATGTGGAATCT-
-------------------------------AAAAAAGTCAAACTCATAGAAGCAGAGAGTAGAATGGTGGTTGCCAGGG
GC-------TGGGGGGTGGGGGAAATGGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAG--
-----------------TTCTGGAGATCTAATG-------TACAGCATGG---TGACTATAGTTAATAATAC--TGTATT
GTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCACCACACACAAAA----AAATGGTAACTATGTGAGGT
GATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTA
AATATATACAATTTTTATTTGTCAATTATA--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------CCTCAATAAAGCTGGAAAAA--------------------
--------------------------------------------------------------------------------
----------
>Canis_familiaris
CATTTATATACAATGCACAAGGCATACAAAAATCAATCATTAAT----TAA-----TTCATGC---AAAAGAGTC---TT
AGTATACTTAATATATAAAGAACCCATATTACTAATTAGCAAAAAATCAAAC------------AATCTGATTTAAAAAT
GGGCAGAAGGTCTTCAATAGATATTTTTTTTA--AAAGAAAACATTCACATGACCAACAGGTACCTGAGAAGATGTTCAA
CATCA-CTCATCATCAGGGAAATGCAAATCAAAAGGTCAATGAGGTATCACCTCATGCCTATTAGAATGGCCAAAATCAA
CAACACAAGAAACTACAGGTGAGGTTCAGGATATTGAGAAATGGGAACTCTTCTGTGC--ATGGTGGGAATATAAA-TTG
CTACAGTCACTATACAAAATAGGATGGAAG-TCCTCAAAACACTACAAGTAAGACCAC---ATGATACAC-TATTTCAAC
TTCTGGGTACTTATTTGAAGAAAATGAAAA-ACTAACTCTAAAACAGATATGCGCCTACATGTTCATTACAGTATTATTT
ACAATAGCCAAGATGTGGAAACAACCTAAATGTCCACCGACAAAAGAATGAA-----TATGCA------------ATAGA
CACACAGACACACGCA---AAATATTATTCTCCCATAAAAAAAGAATGAAATCTTGCCATTT---ACAATGTGTATGAGC
CTTGAAGGCACTATGTTAAATA---------AGCCAGAAAAAGGCAAACAGCATATGATCTCACTTATATGTGGGATCT-
--------------------------AAAAAACAAAAACTAAACTCATAGATACACAGGATAGACTAGTCTTTGCCAGAG
GC------------GAGGAGTAGGGTGGGTAAAGG-AAGTCAAAAGATACAAACTTCCAGTTAT--AGAGTAAGTAAG--
-----------------TCATAAGGATACAGTA-------GACAGTATTG---CAACCATACTTAATAATATTGTGTATC
ACACATTTGACAGTTGCTAAGA--GTAAACCTTAAAAGTTCTCATTATACATAAAAT-TAATTCTGTAATTTTGTA--GT
GATGG--TTGTTAACTAGACTTATTGTGGTGATCACTTCACAGTATGTATAAATTTGGAATCATTATGTTGTATGCCTGA
AACTAGCATGATGTTG-TATGTCAATTATA--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------CCTCAATTA--------------ACAA---------AAT-
AAAATAAAAAATACTTAT---TT----TAG------ATTTACC-CTTCTCAGTTAAT----------CACTATTCAATTT
GGGGTTACTC
>Felis_catus
TCTTCATATACAAAACACAAGGCACACAAAAATCAATCATTAATCCAATAA-----TTCATCC---AAAAGATAC---TT
AGTA----AAATATATAAAAAACTCATACCACTTAATAGTCAAAT-----------------------------------
---TAGGTGACC-TGAGTAGATATTTTTTT----AAAGAAGACATTCATATGGCCAACAGGTACATGAAAATGTGTTCAA
TATCA-CTAATCCTCAGGGAAATGCAAATCAAAATGACAATGAGGTATCACCCCCTGCATGTTAGAATAGCTAGTATCAA
AAGGGCAAGAGACAACAAATGCTGGTGAGGATGTTGAGAACAG-GAATTCTTATGCAC--ATGGTGGGAATGTAAA-TTG
GAGCAGTCATTATGGAAAACAGTATGGAAG-TCCTCAAAAAATTGCAAATAGGACAAC---ATGATCCAC-CAATTCTAC
TTCTAGGTATTTATTTGAAGAAAATGAAAAAACTAACTCCAAAAGACATATGCACCTCCATGTTCATTATAGCATTATTT
ACAATAGCTAAGACATGGATACCACCTGAGTGTCCATCAACAAATAAATGAATATGTTATACACACACACACACAACACA
CACACACACACACACACAAGAATATTATTCACCTAT-AAGAAATAATGAAATCTTGCCATTTGCAACAACATGGATGAAT
CTTGAGGGAATTATGTTAAATGACATAAGTCAACCAGAAAAAGACAAATACCATATGATCTTATTTATATGTGGGATCTA
AAACCAAAGCAAAACAAACAACAACAACAAAAAAAAAACCGAACTC--AGATACAGAAAACAGATTGGTTGTTACTAGAA
GCTGGGAATGGTTGTCGGGGTGAAA-----GAAGA-GAGTCAAAGGGTATAAACTTCCAGTTAT--AAAGTGAATAAG--
-----------------TCATGGGGATATAATA-------TACAGCATGG---CAACTATACTTAGTAATAC--TGTATC
ACACATTTGAAAATTGCTGAGA--GTAAATCTTAAAAGTTCTCTTCATACACAAAATGTAATTATACAATTTTGTATGGT
GATGG--TAGTTACCTAGGCTCACTGTGGTAATCATTTCACAACATTTATAAGTATGAAATCATTATATTGTACACCTGA
AACTAATATAACGTTG-TATGTCAAATATA--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------CCTCAATAA--------------AACA---------GAC-
AAAAG---------TTAC---TT----TAG------ATTTACC-CTGTTCAATGAATGACTTCAT--CACAATTTAGTTC
TAGGTTACTC
>Manis_javanica
TTTTC--ACATAAAACACAAGGCATAT-AAAATCCATCATTCA-------------TTCATTT---AAAAGCTAC---TT
ATTT-----AAAATGTAA-GCACTCATGCCATTCAATAGCAAAATAAACA--------------AATATGATTAAACAAT
GA-CAGAAGATC-TGAATAGACATTTTTCT----AAAGAAAATATACAGATGTCCAACAGACACATGAA---------AA
TGTCACCTAATCATCAGGGAACTATAAGTCAAAACCTCAATGAGATATCTCCTCAGAGCTGTCAGGAGGGCTAATATAAA
AAAGAGAAGAG---ACAAATGCT--TGAGGATGTGGAAAACAGAGAACCC-TGTGCACTGTTGGTGGGAATGTAAA-TTG
GTGCAGCCTCTGTGCAAAGCAGTATGGAGGTTCTTCAAAATACTAAAAATGGAACTACCATATGATCTAGTCAATTCTAT
TTCTGGATATTTATTCAAAGAAAGCAAAAATATCAGCTTGAAAAGATACATGCACTCCCACATTCAATGCAGTGCTGTTT
ATGATAACCAAGATATGGGAA-AACCTAAGTGTCCATCAACAGATGAACAGG-----TAAAGC------------AAAT-
----TACACTCACACAC-----TATGATTCAACC-TTAAGAAAGAATGAAACCCTGCTATTTGCAACAATGTGGATGGAC
CTTGAGGGCATTATGCTAAGTAAAATA----AGATAGAGAAAGACAAATACCTTATAAGCTCACTTACATGCAGAACCT-
------------------------TAAAAAAGAAACAAACAGGCTCTTAGAT--AGAGAACATATTCGTGGTTACCAGGG
GCAGGGGGTTGCAGGGTGGGTGAAATGGATGAACA-TAGTCAATAGGTTCAAACTTCCAGTTAT--AATATAAATAAG--
-----------------TCATGGGAATGTAACATACATCATATAGTATGTTATAGTCTATAGTTAATAC-----TGTACT
GCATATTT-AAAGTTGCTAAAAGAGTAAGTTTTAAAAGTTCTCATCACAAAGAAAA-----TTCTGTAACTATGTATGGT
AATGG--ATGTTAATTAAACATATTAAGCTGATCATTTCATCATAC-TGCACATATTGAATTGT--TATTGTACACCTGA
AACTAATATAATGTTG-TATGTCAATTATA--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------CCTCAATTG--------------AAAAAAAGGAAAAGACA
AAAACACAAGTTACTTAT---TT----TAG------ATTTACT-CTGTTCAATAAATGAG-TTATT-CACTAATTAGGTC
TGGGATATTC
>Myotis_myotis
TCTCCATATAAAAAGCATAAGGTATGT-AAAATAATTTATTAATGAATTAA-----TTAGTTC---AAAAGATAC---AT
ATCA-----AAAATATAAAGAAGTCTTACCACTCAATAGCAAAAATATCAAAATATTTAATCCAAATATTGTTTAAAAAT
GGGCAAAGAATC-TCAGTAGACATTTTTTTTTCCAAAAAAGACATTAAGATGGCCAACAAGTACGTGAAAAGATTCTCAA
AATCA-CTCATCATCA--GAAATGCAAACCAAAACCACAATAAGGTACTACCTCACACCTGTTAGAATGGCTATGATTAA
-AAGACAAGAAATAATAAATTATAGCAAGGATGTGGAGAAAAGGGAACCTTTGTGCACTGTTGGTGGGATTGTAAATTTA
GTGCAGCCACTATGGAAAACAG-------GTTCTTCAAAAAATTAAAAATATAACTACCATGTGATTCAG-CAATTCCAC
TTTTTGAAATGTAACCAAAGGAAACAAAGCCACTAACTAAAAATGATATATGCACCTTCATGTTATTTGCAGCATTATTT
ACAGTAGGCAAGCTATGGAAACAACCTAAGTGTCCATTGATGGATGAATGGA-----TACACACACACACACAC-ACACA
CACACACACACACACACTGGAATAATATTAGGTTATTAAAA---AATGAACTCTTGACATTTAAGAC-ACATTAGTGGAA
GACAAAAGCATTGTG-TAAGTGAAATAAGTCAGACAGAGAAAGACAAATACTGTAAGACCTCATTTATATGTGGGATCTA
AATAAAACAA------------AACAAACAAACAAAAAACAAGCTCAGAGATACA-AAAAGAGATTGGTCGCTGTAAGAG
GT--GATGGTGGGGAATGGGTGAAATGGGCGAAGG-AATTCAACAGGTATAAACTTCTATTTAT--AAGATAAATAGAAG
AAATTTATAAGATAAACTTCTATTTATAAGATAAATATATTATAGCAGAGCAACAACTACAGTTAATAATAC--TGTATT
GCATATTTGAAAGTTGGTAAGAGAGTAAATATTAAAAATTCTCATCAGAAGAAAAA--AAAATCTATAATTATGTAATGT
GACAG--ATGTTAACCAGACTTATGGGGATGATCATTTTGCAAAATATAAAAATACTGAATCAT---GTTGTGCACCTGA
AACTAATATAATTTTATTATGTCAACTAGAGGCCTGGTGCACGACATTCGTGTACTTGGGGGCGGGGGTGTCCCTCAGCC
CGGCCTGCGCCCTTTCGCAGTCGGGGAGCCCTTGGGGGAGTGGGCCTGCGGGGAGTGGGCCTAAGCCTCAGTCGGACATC
CTTAGCTCTGCCATGGAGGCAGGCCACTGTGCTCGCCAGCCATCAGCCTGGCTTTTGCCTGAGCAGTGCTCCCGCTGTGG
GAGCACACTGACCACCTGTGTGTTGAGCATCTGCCCCCTGGTAGTCAGTGGTGTCATAGTGACTGGTCATTTTGCTGTTC
CATTAACTTGCATATTACCCTTTTATTATATAGGATTACACCTCAGTAA--------------AAAA---------GA--
---------------TAC---TT----TAG------ATTTACC-CTGTTCAATAAATGAG-TTATT-CATTGTTAAGATC
TGGGCTACTC
>Rousettus_aegyptiacus
TCTCCATGTACAAAGCATAAGGCATAA-AAATTCAATCATTGAT----TAA-----TTAGTTC---AAAAGATGC---CT
ATCA----AAATATATGTAAAAGTCATACCACTCAGCAAAAAAAAAAAAA--------------AAAATGATTAAAAAAT
GGGCAGAGGATT-TCAATAGACATTTTTTC----AAAGAAGACATTAAGATGGCCGA---GTACATGAAAAGATGTTCAA
CATCA-CTAATCATCA-GGAAATGCCAAT--------CAATAAGAGATCATATCACACTTGTTAGAACGGCTATTATCAA
AAAGACAAGAGATAACAAATGCTGGCAAACACGTGGAGAAAGGAAAACTCTTGCACA---TTGTTGGAAATGTAAA-TTG
GTGCAGGCACTACAGAAAACAGTATGAAGATTCTTCAAAATATTAAAATTGGAACTACCATATAATCCAG-CAATTCCGC
TTCTGGGTATTTAGCCAAAGGAAG-AAAAATACTACTGAGAAATGATGCATGCATCCCCATGTTCATTGCAGCATTATTT
ATAATAGGTAAGCTATGGAAACAACCTA--TGTCCATCAACAGATGAATGGA-----TAAAGA------------AAATG
TA-GTATATACGCACACAGGAATATTATTCAGCCATTTAAAA--ACTGAAATGTTGGCATTTGTGACAACATGGATGAAC
CCTGAGGACATTATGCTAAGTGAAATA----CAACAAACAAAGACAAATACTCCATGATCTCACTTACATGTGTAATCTA
CAATAAAATAAAAACAA-----AACAAACAAATAAACAA-AAGCTCATAGATACAGAGAAGAGATTGGTGATTGCCAGAG
GTGAGAAG----GAGATGAGTGAAATGGGTGAAAG-AATTCAA-AGGTACAAACCTTCAGTTAT--AAAATAAATTAA--
-----------------GTTTGATGGTATAACG-------CACAGCATGG---CAACTATAGCTAATAATAT--TGTGTT
GAATATTTGAAAGTTGCTAAGAAGGTAAATCTTAAAAATTCTCATCACAAGAAAAA----TTTCTGTAACTTTGTATGGT
GAC----ATGTTTACTAGACTTATTG---TGATCATTTTGCAATATATTCAAATATTTAAT-----TGTTATACACCTGA
AATTAATATAATTGTG-TATGTCAATAATA--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------CGCCAATAA--------------AAAA---------GA--
---------------TAC---TT-------------ATTTACT-CTGTTTAATATATAANNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNN
>Sus_scrofa
TGTTTACATACTAAGTACAAAGCATAC-AAAATCATTCATTCATCT--TCA-----TTCATTC---AAAAGACAC-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------TTGTTTTAG------ATTTATC-CTGTTCAATAAATG---TTATT-CACTATTTAGATT
AAGCCTACTC
>Bos_taurus
TCTTTGTATACAAAGTACAAAGTATGC-AAACTCAATTGTTACTAC--TAAATCCATTCACTC---AAAATATAC-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------TTGTTTTATCGGTACACTAATC-CTGTTCAATAACTATG-TTATTCCACCATTTAGGTT
GAGGCTACTC
>Equus_caballus
TCTTCACACATAAAGCACAAGGCACAC-AAAATCGATCAATTAT----CCA-----TTCACTC---AAAAGATAC-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------TTATTTTAA------ATTTACC-CTGCTCAATAAATGAG-TTATT-CATTATTTAGGTC
TAGGCTACTC
>Ceratotherium_simum
TCTTCACATACAAAGCACAAGGCATGC-AACATCAATCATTCAT----TCA-----TTTATTC---AAAAGATAC-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------T-ATTTTAG------ATTTACCTCTATTCAGTAAATGAG-TTATT-CACTATTTAGGTC
TAGGCTACTC
>Condylura_cristata
TGTTTACACACAAAGTGCAAAGCATGC-AAGATCAAGCAGTAAT----TGATA---ATTTTTC---AAAGTTTGC-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------TTATTTTAG------ATTACCC-CTGTCTGACAAA--AATTTATT-CATTATTTAAGTC
TAAGCTGCCT
>Erinaceus_europaeus
TTTTAATATATAAAACACAAGACACAT-AAAATCAAT-GTTGA-------------CTAATTC---AAAGATTAT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------TTAATTTAG------CTCTACC-CTATTTAAGAAATGAG-TTATA-TTCAATTTAGGTC
CAGGATATTC
>Homo_sapiens
CTTTCATATACAAAGCACAAGGCTGAA------CAACTATTAA-------------TTAATTC---AAAAGATAC-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------TTATTTTAG------ATTCTTC-CAGTTTAATAAATGAA-TTATC-CACTTTTTAGGTC
TAGGGTATTC



Bat72_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTT
TTG-------------ATATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACA
TAGTTACCAT---------------------------------TTTTTTGTGTGTGGTGAGAACACTTAAGATCTACTCT
CTTAGCAAATTTCAAGTATACAATACAGTATTATTAACTATAGTCACCATGCTGTACATTAGATCTCCAGAACTTATTCA
TCCTGCATAACTGAAACTTTGTACCCTTTGACCAACATCTCCCCATTTCCCCCACCCCCCA------GCCCCTGGCAACC
ACCATTCTACTCTCTGCTTCTATGAGTTTGACTTTTTTAGATTC------------------------------------
-------------------------------------------------
>Equus_caballus
AATCAAAAGACTCTAAGATATT----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------GTG-GA-T-TTTTCCAA-TTACCAAAT-------AGAAGTG---TA
TTTCCC-------CCCAGCTTTATTGAAAAATAATTGCTATGC-ATCCCTGTATAAGTTTAAGGTGTACAGGATGATGGT
TTG---------------GTTTACATATAGTGTGAAATGATTACCACAATAGGTTCAGCTAAC--ATTCATCATCACGTA
TAGATACAATAAAAAGCAAAGAAAAAAGGGA------AAAAAATTTTCTCCTTGTGATGATAACCCTTAGGATTTACTCT
CGTGGCAACTTTCCTGTACATTGTACAGCAGGGTTAGCCACAGTCATCATGGTAAACGTTACATCCCTAGCACTTATTTA
TCTC--ATAACCGGAAGTTTGTCTCTTCTGACCACCTTC-CTCCAATTCCCCCTCCCTGCACCTTCCGCCTCTGGTAATC
ACAAGCCTGATTTCTTTTTCTGAGTTTGTTTTCGTT-----------TTTGT------TTT---AAA--------GAGGG
CAAATATT---ACAGAAT-TCTCTTGGGAAGAAAATATGTTCTCCTTCA
>Ceratotherium_simum
AATCAAAAGACTCTAAGATATT----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------GTG-GA-T-TTTTCCAA-TTACCAAAT-------AGAAGTG---TA
TTTTTC-------CCCAGTTTCATCGAAAAATAATTGCTGTGC-ATCACTGTATAAGTTTAAGGTGTACAGCATGATAGT
TTG---------------ACTTATGTACATTTTGAAATGATTACCACAATAGCTTCAGCTAAC--ATCCATTATCGAGTG
TAGATACAATAAAAAGAAAAGAAAAAAGGA-------AAAAAAAATTCTCCTTGTGATGACAGCTCCTAGGATTTAGTTT
CTTAGCAACTGTCTTGTATATTGTATGGCACTGGTAGCCACAGTCATCACGTTGTACGTTACGACTCTCGTACTTATTTA
TCTT--ATAACTGAAAGTTTGTATCTTCTGACCACCTTC-CTCCAATTCCCCCTCCCCCTCTCCTACACCTCTGGTAATC
CCAAGTCTAATTTCTTTTTATGAG-----------G-----------TTTTT------TTT---TAA--------GAGGA
AAAATATT---ATAGGAT-TCTGTTAGGAAGAAAATATGTTCTCCTTCA
>Myotis_myotis
CATCAAAAGATTCTAAGGTATT----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------GTG-GA-TTTTTTTCAATTTATCAAAT-------AGAAGTG---TA
TATTTT--------TCAGTTTTATTGACA-ATAATCGGCATAC-ATCACTGTATATATTTAAGGTGTACAACATGATTGT
TCA---------------AATCACATATATGGTGAAATGATTACCACAACATGTTCAGCTAAC--ATCCATCTTCTCACA
CAGATACAATAGAAGAA--------------------TAAAAAACTTCTCCTTGTGATGAAAATGCTTAGGATTTACTCT
CTTAACCACTTTCCTATATATCACACTTCAGTGTTACCTATA---ATCATGTTGTACGTTATATCCCCTGTGCTTATTTA
TCTT--ATAACTGGAATTTTGTACCTTTTGACCATCTTC-CTCTATTCCCCTTTCCCCCCACCCTTTGTC----------
-----TATAATTTCTTTTTCTATG------ATTTTT-----------TTTCT------CCT---GAA--------GAAGA
CAGATT-----ATAGGAT-TCTCTTTGGAAGAAAATATGCTCTCTTTTA
>Rousettus_aegyptiacus
CGTCAAAAGACTCTAAAATATT----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------ATG-GA-T-TTTTCCAATTTATCAAAT-------AGAAGTG---TA
TTTCTG--------AGAGTTTTATGAAAAAATAATTGACATAC-ATCATTGTATAAGTTTAAGGCACACAACATGATAGT
TTATGTTTGTACATGATGAATTATAAATCTTGTGAAATGATTACCACAATAGGTTCAGTTAAC--ATCTATCTTCTCATA
TAAATACAATAAAAAGAAAAGAAGAAAAGAAAAACTGAAAAGAAATTCTCCTTCTGATGATAACTCTTAGGATTTACTCT
TTTAGCAATTTTCCCATACATCAAAC-AAATTGTTAGCCATAGTCATCACGTTGTACGTTATATTTCTAGTACTTATTTA
TTTT--GTAACTGGAAGTTTGTACCTTTGGATCATCTTC-CTCTACTTCCCCCTCTTCTCACCCTCTGCCTCTGCTAACC
GCAAGTCTGACCTCTTTTTCTATGANNNNNNNNNNN-----------NNNNN------NNN---NNN--------NNNNN
NNNNNN-----NNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>Canis_familiaris
AATC-AAAGACTCTAAGATATT----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------GTACTTTTTTTTTTCAATTTGCCAAAC-------AGAAGCA-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------TTTTT------TTT---AAA----------GGG
CAAATACT---ATAGGAT-TTTCTTTAGAAGGAAATATGTTCTCCTTCA
>Felis_catus
AATC-GAAGACTCTGAGATATT----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------GTG-TA-T-TTTTCCAGTTTACCAAAC-------AGAAGTA-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------CATTT-----TTTT---AAA--------AAGGG
CAAATATT---ATCAGATGTTTCTTTT--GAAAAATACGTTCTCCTTCA
>Manis_javanica
AACC-ACAGACTCTAAGGTATT----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------GTG-GA-T-TTTTCCAATTTACCAAAT-------AAAAGTG-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------TACCT-----TTTT---AAA-------AGAGGA
CAAAC------ATAGGAT-TCACTTTGGAAGAGGATATGTTCTCCTTCA
>Sus_scrofa
AATCAAAAGATTGCAAATCATT----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------GTG-CA-T-TTCCCCAATTTACCAAAT-------TGAGGAA-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------TATTT-------TT---AAA-----AAAGAGGA
TAAGTAGT---ATAAGAT-TCTCTCTGGAAGAATGTATGTTCTCCTGCA
>Tursiops_truncatus
AATTAAAAGACTGTAAGATACT----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------TTG-CA-T-TTTTCCAAGTTACCA-AT-------TGAAATG-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------TATTT------TTT---AAA-----AAAGAGGA
TAAATAGT---ATAAAAT-TCTCTTTAGAAGAAAACACGTTCTCCTTCA
>Condylura_cristata
AATCCAAAGATTCT--GATATT----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------GTG-GA---TTTCCCAATTTA----AT----------AGAA-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------TACTT---TTTATT---AAA-------CAAGAA
CAGATATT---ACAGAAT-TTTCTTTAGGAGAAAGTGTGTT-----TCA
>Solenodon_paradoxus
AATAAAAATACTCT--AAGAAG----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------CTG-TAGTGTTTTCCAGTTAACCA-----------GAAGTG-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------TATTT--TCCTTTT---GAA--------GAGGA
CAAGTATT---ACAGAAT-ACACTGTGAGAAAATATAT--TCTCCTTCA
>Homo_sapiens
AACCAAAAGACTCTAAGATAATTATTTTATTTTATTAGGGTATAATTGACAAAAAATTTGTACATATTTAGTTTCATAAT
ATGATGTTTTGATATGTGTACACATTGTGAAATGCTTAAATGAAGCTAATTAACATGCATCACCTCTCATACTTATTTTT
TGTTGTGAGAACATTTAAGATCTCTCTCAGCAATTTTCAAGTATATAATACATGATTATTAACTATAGTCACCATATTGT
ACAATAGATCTCTTGAACTTATTTCTCCTGTCTAACTGAAATTTTTATCCTTTGATCGAAGCTTGTCTTTCCCCCACTTC
CTCCTCCCTCAGCCCTTGGTAACTACCATTCTACTCTCTGCATCTATAAGTTTGACTTTTTTAGATTTTAGGTATATGTG
AGATCGTGAAATACTTTAAAGACTCTAAGACAGTGTA-GA-T-TATTCTAATTTACCATATATATATGGTAAATA-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------TATATATATATTTT---ACAATCAGGATAAGAG
TAAGTTTTTTCACAATGT-ACTCTTTGGGAGAAAATATGTTCTCTTTCA



Bat78_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------AAAAAATGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATAC
GTA----------------------------TATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGT
CAATTATACCTCAATAAAGCTGGAAAAA----------------------------------------------------
--------------------------------
>Canis_familiaris
TCTAAGTGCAGTGGAGAACCCTTAATGAG---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------TTGTAAGCAG------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------GAGAATGG--------TCTTATGTGC-TGTTTT---AAGGAT
TATA--------------ACTATGCAAGGTGATGG--ATGTTAACTGAACATACTTTGCTAATCATTTCACAATATATAC
AC-----------------------------CACCACGTCAGTATGTTGTGCACCTAGAACAAACACAA-CACTACATGT
CAAGCATAGCTCAACATAC--AGA-------AAACAACCCG---TCCAAGGCTGGAGTGGGAAGAGAAATGAAAACGGGG
GG-CGGAGGCAGGACCAGCTGGGGAGCGGGGC
>Felis_catus
TCCAAGTGCAGTGGAGAACCACTAACGGG-----TTTTTTTTTTTTAATTTTTTTTTTTTAACGTTTATTTATTTTTGGA
CAGAGAGAGACAGAGCATGAACGGGGGAGGGGCAGAGAGAGAGGGAGACACAGAATCGGAAACAGGCTCCAGGCTCCGAG
CCATCAGCCCAGAGCCCGACGCGGGGCTCGAACTCACGGACCGCGAGATCGTGACCTGGCTGAAGTCGGACGCCCAACCG
ACTGCGCCACCCAGGCGCCCCAACCACTAACGGGTTTTAAGCAG------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------GAGAATGGTGCGG---TCTTATTTGC-TGTTTT---AAAGAT
TATA--------------ACTATGCCAGGTGATGG--ATGTTAACTAAACATATTTTGC---TCATCTCACAATATGTAT
GCAT--------------------------CTATCTCATCAGTACGTTGTGTACCTGGAACGGATACTG------TATGT
CAATTACAGCTCGACG-----AGA-------AAACAATCCA---CCTGAGGCCAGAGTGGGAAGAGAGATG---------
---------TAA-------TGCAGCAGGGGGC
>Manis_javanica
TCTAAGAGCAATGGAGA---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------GTGG---TCTTATTTGC-TGTTTA---AAAGAT
TGTA--------------ACTATGTGTGGTGAAGG--ATGTTAACTAAACTTATTCTACT--------------------
--------------------------------------------------------------------------------
-------------------------------------TCCA---TCTGAGGCCGGAGTAGGAGGGCTGA----GTTGGGA
AG-CTGCTGAAA-------TGAGGCAAGGGAT
>Myotis_myotis
TCTAAGTGCAAGGGAGAGCCATGAACAAG---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------TTTTAAGCAG------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------ATGAATGGTGTGG---ACTTATTTCG-TGTTTA---AAAGAT
TGTA--------------ACTCTGTGTGGCGATGG--ATG-AAACTAAGCTTATTCTGCTAATCATTTTGCCATCTATAC
ATAT---------------------------TAGCAAATCATTATGTTGGGCACCTAAAACTAATATAA-TGC--CATGT
CAGTTATAGCTCAACAAAG--AAAA------CAAAGTTCCA---TTTGAGGCCAGAGTGGGAGGAGAGATG-AGTTGGGG
AG-CTGCTGAAATGAGAAGTGAGGTAGGGGCT
>Rousettus_aegyptiacus
TCTAAGTACAGTGGAGAACTAATAATGGG---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------TTTTAAGCAG------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------GAAAATGGTGTGG---TCTCATTTGC-TGTTTA---AAAGAT
TGTA--------------AGTATATGTGGTGAGGG--ATGTTAACTAAACTTATT---CTAATCATTTTGCCATATATAT
ATATATATATATATATATATATATATATATATGCCAAATCATTATGTTATGCATTGAAAATGAATACAA-TGCTACATGT
CAATTATAACTCAATAAAG--AAAAA-----ACAAACACTG---TCTGAGGCCAGAGTGGGAAGAGAGATG-AGTTAGGG
GG-TTGCCAAAA-------TGAGGTAGGGGCA
>Sus_scrofa
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------TTTGGCAC------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------CAGGGCGGCAGGG---ACCTAGCTGCTTGTGTG---AAAG-C
TGCA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TCTGAGGC---AGAGGGAGGAGAGG-----------
---CTTCAGGAA-------CGAGGAAGGGTAC
>Tursiops_truncatus
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------TGTCAAGCAC------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------AGTGATGGCAGG----TCTGATCTGCTTGTGTG---AAAG-C
TCCA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TCCGAGGCC------GCGAGGGAGGCG---TCTGGA
GG-CTGCGGGAA-------CGAGGAGGGGGCC
>Equus_caballus
TCTAAGTGCGGTGGAGAACCA-TAAGGGG---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------TTTTAAGTGG------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------GAGAATGGCATGC---TCTTATCTG-TTGTTTA---AAAG-C
TCCG----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TCTGAGGCCAGAGTGGGAGGGGAGGGG-AGCTGGGA
GC-CTGCTGAAA-------TGAGATAGGGGCT
>Ceratotherium_simum
TCCAAGTGCAACGGAGAACCA-TAAAGAG---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------TTTTAAGCAA------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------GAGAATGGCATGGTCTTCTTATTTG-TTGTTTA---AAAG-C
TCCG----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TCTGAGGCCAGCGTGGGAGGGGAGATG-AGTTGGGA
GC-CTGCTGAAA-------TGAGGTGGGG-CT
>Condylura_cristata
CCTAAGTTCAGTGGAGAGCCATTAATGAG---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------TTTTAAGCAG------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------GAGAATGATAAAA---TCTTACTTGCTTGTTTA---AA-G-C
TCCA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TCTGATGCCAGGGT--GAAGGGAGGGGCAATTGGGA
GG-CAGCTGAAA-------AGAGGAAGGGACT
>Erinaceus_europaeus
TGTAAATACAATCGAGGACTAATCAGGAA---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------AGTGACATTGGCTTTTAAAAATGTCCTCTATTAATTAATTA
ATTAGTATATTGAACAAAGACAGAAATTGAGAGGGAAGTAAGAAATAAAAGAGGGAGAAAGAGAGACACATACAGGCCTG
CTTCCCTGCTTCTGAAGCCTCCTTCTCCCTGCAGGTAAAATGAGGACTGGAGACTTGAATCTGGGCCCTTGCACATGGGG
ACATGTTTGCTCAGTTGGGTGTACCAGCTTCAGATCCTGAGAATGACAAGG---TCTTATTTTCTTGTGTA---AAAC-C
TC-A----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TCTGAGATGAAACCAGAAAGAGAAGTG--AGTGGGA
AG-CTGCTAACA-------TGAGGAGGGGACT
>Homo_sapiens
TCTAAGTAGAGTGGAGAACCATTAAGAGA---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------CTTTAAGTAG------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------GAGAATAGAATGG---CCTAATTTGCTTGTTTG---AAAG-A
TCCA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TCTGA-GCCTGAGTAGCAGGAGGGAGCCGCCTAAGG
GGTCTGCAGAAG-------TG-GGTTGGAGCT



Bat84_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
---------TCAAAGGGTACA---------------AAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGT
--ACAGCATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTT-----------------------------
-----------GCTAAGAGAGTAGA-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TCTTAA
GTGTTCTCACCACACACA-AAAAAATGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTT
CACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATA
AAGCTGGAAAAA--------------------------------------------------------------------
-----------------------
>Myotis_myotis
AGACTTAA-A----TGATAATAAACATA-TTTTTATAATGCTGGAAAGTTGTCAA-AATGTTTATT---AACAAAATCAT
CCAAGG-----------TACA---------------ATCTTCAAGTCAT--A----TGATAAGTCTTGGGGATATAATAC
--ACAGCATGGTAACTGCAGTTAATAATATTGTATTGTATAC-TGAAATTT-----------------------------
-----------TCTAAGATAGTTGA-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TCTTAA
AATTTCTCATCACAAGGAGGAAAATTTGTGACTATGTATGGTGATGG--ATGTTAACTAGACTAATTATGGTAATCATAC
CCTAATGTGAACAAATATCAAATCATTATGCTGTATACCCAAAACTAATGTCATGT---TATGTCAGTTATATCTCAATT
TTTTAAAA-------------AAAATAATCATCC-------AATG--------------ACTCTCCTTTGACAACAAAG-
--AACTTGAATCTCAGCAAATTG
>Rousettus_aegyptiacus
AACCATTG-AT-GCTAATAGTAAACACATTTTTTAGAATGCTGGGAAGTTTACAA-AATGTTTATT---GACAAAATTAT
CTAAGG-----------TACA---------------ATCTTCTAGTTAT--AAAAGGAATAAGTCATGGGGATATAATAT
AAAAAGCATGGTGACTGTAAGTAATAATACTGTATAT------TGAAATTT-----------------------------
-----------GCTAAGA--GCAAG-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------GCCTTA
AATTTCTTATCATAAGAA--AAAAATCATGACTATGT--GGTAATGG--ATGTTACTTAGACTTATC-TGAGGATAATTT
CTCAATATATACAAATATCAAGTCATTGTGTTGTACACCTGAAACCAATGTTATAT-------GTCGTTATACCTCAATT
TAAAAAATTA-----------AAAATAATCATCT-------GATG---CAAGAAGTATGACTCCCCTTTGATTGCAAAG-
--AACTTGAGTCTCAGCTAATTG
>Condylura_cristata
AACACATG-GT-GGTAAAAATAAACA---TGTGTACAAGGCTGGGAATTTCACCA-AATGGTTTTT---GAAAGAATTAT
CTAATT-----------TACAGTTTGATGTTAAGCAAACTTCCAGTTGC--AAAATCATTAAGTC---GGCATGTCATAT
--GCAACAAAATGCCTGCCTGCAAAAATACAGCACAGTGTATGTGAATTTTTAAAGATTAATTTATTTATGCTTACAGAA
CTGGGGTACAGGCCAGAGGTGCAGGGGCGGTGAGAGAATTCACCAGAGTCAGAGTGGGGAGCAAAACAGGCCGACTGACG
AAGTACACTGCTGAGGGGAGCAGCAGGCAGGTCAGGAGAGGTCTGCCGCACCATGTGGGTCACCTCAGGGCGGGAATCGA
ACTCATGCTGAAGTGACTTTAGCTTCTTAGTGCTGCGTTTACCCGATGTGGCATCAGGGAGGGCCCTGAGTCCCTCTTTA
ATATTTCCATCGTAAGAA---AAAAATGTAAGTATGCATGTTGAG----CTGTTAACTAAATTTATAGCGATGATCATTG
CACAATATATGCAAATGTAGAATCA--GTGTTTTACACCTGCAACTAATACAATAT-TATGTGAGAAGCGTATCTCAATT
AAAAAATAATAAAAACAA---AAAAGAATGATTT-------GATG---CAAGAAGTATGA-----CTTTGAGA--AAAG-
--AAC-TAAATCTCAGAAAATTG
>Sorex_araneus
AGCCATTG-GT-GATAATAATAAAAAATATTTGTAGGAAGCTGTGAATTTTACAA-AATATTTAGT---AAAATAATCAC
CAAA----------------------------------CTTCCATTTAT--AAAATAAGTAAGTTG-GGAGAGATAAT--
------TATAGT------------TAACACAGCAATGT-----TGAAATTT-----------------------------
-----------GCCAAGACTGTAGA-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TGTTGA
G--TTCTCATTGTGAGGA--AAATTCTGTAACTATTTATGGTTATGG--ATATTCACTAGAGTTATA-TAATAATTATTT
CACA-----TACAAATGTGAAATCATTGTATTTCACACCTGAAACCAATATAATGTTCAATTGTCCATATTATCTCAATT
AAAATAATTAAAAC-------AAAAAAATCATTT-------GATG---CATGAAGTGTGA-CACCATTTGA----AAAG-
--AATTTAAATCTGAGAAAAATG
>Canis_familiaris
CACCTTGA-CT------------ACACA-TTT-TGAAATGCTGGGCAGCTCACAA-AATGTTTCTT--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------AAAAGAATCATCT-------GATG---CAAGAAGTATGATCCCTCTTTGATAACAAAG-
--AAC-TGAGTCTCAGAAAATTG
>Felis_catus
AGCCTTCA-CT------------ACACA-TTTGTGAAGTGCTGGGCAGCTCCCCAAAATATCTATT--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------ACAAGAATCATCT-------AATG---CAAGAAGTGTGACCCCTCTTTGCTAACAAAAA
T-AAC-TGAGTTTCAGAAAATTG
>Manis_pentadactyla
AGCTTTTT--T------------ACACA-TTTGTAGAATGCCAGGCAGTTCACAA-AATGTTTATT--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CAAAGAATCAGCCGATGCAAGATG---CAAGAAGTACAACTCCCCTTTAATAGCAAAG-
--AAC-CAAATCTCAGAAAATTG
>Sus_scrofa
AGCCTTTGAGT------------ACACA-TTTGTAGACTGCTGGGAAGTTCACAG-AATGTCTATT--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------AAGAGAATCATCT-------GACA---CAAAAAGTATGACTCCCTTTTGATACCAAAAA
TAAACTTGAGTCTCAGAAAATTG
>Bos_taurus
AGCCTT---GT------------ACACA-TTTGTAGAATGCTGGGCAGTTTACAA-AATATTTATT--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------AAAGGAGTCATCT-------GATC---CAAAAAGTGTGACTCCCCTTGGGTAACAAAAA
--ACCTTGAGTTTCAGAAAACTG
>Equus_caballus
GGCATTTGACT------------ATGCA-TTTGTAGAATGCTGGGTAGTTCACAA-AATTTTTATT--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------GGAAAAATCATCT-------GATG---CAAGAAGTATGACACCTCTTTGACAAGAAAG-
--AAT-TGAGTCTGAGAAAATTG
>Ceratotherium_simum
AGCTTTGC-CT------------ACACA-TTCGTACAATGCTTGGCAGTTCACAA-AATATTTATT--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------GAAAGAATCATCT-------GATG---CAAGAAGTATGAGTCCCCTTTGAAAACAAAG-
--AAC--AAGTCTTAGAAAATTG
>Homo_sapiens
AGCCCTTAACGATATTTAAAAAAACACA-TTTGGAGAATGCTGGAAACTAAACAA-AATGTTTACT--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------AAAGGAATCATCT-------GAGG---CAAGGAGCATGATTTGTCTTTGA----AAAT-
--AACTTGAGTCTCAGAAAACTG



Bat85_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
------------TTTTTCCAGCT----------------TTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTA
AGGTGTACAACGTGATGTTTTGATATA-----------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------CGTATACATTGT--------------
-------GAAATGATTACCACAATCA-AGCTAATTAACATATCCATCACCTCACATAG----------------------
-----------------------------------------------------------------------
>Equus_caballus
GTGGGTAAGCG-----AGGCTTAATCCCATTGGAGATTC--TGAGAAATGGTGTAGA---CTATGCCTCTTTTTTGTGT-
--CTGTAGACTTTTCTTTT--------------------TAATTGACATATAACTGACATAT-AAAATTATGTTAGTTTT
AGAGGTACAACATAGTGATTCGATATT-----------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------TGTGTATACTGT--------------
-------GAAATGATCACCACAATAA-GTCTAGTTAACA--TCCATCAC------TAG---ACTATGCTTCA-----TTT
TTTT---------ACCC-AAGAATAAAAG--AGAGGAATATTTATCTAATATCTCCCATCTCCTAAGTGGT
>Ceratotherium_simum
GTGGGTAAGTA-----AGGCTCAATCCCATCGGTGACTCTTTGAGAAATGA-GTAGA---CTATGCCTCTTTTTTGTGT-
--CTGTAGATGTTTCTTTT--------------------CAATTGAGATATAACTGACATAT-AACATTATATTAGTTTT
AGATGTACAACATAGTGATTTGATATT-----------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------TGTGTGTACTGT--------------
-------GAAATGATCACCACAATTATGTCTAGTTAACA--TCCATCTC------TGG---ACTATGCCTCA-----TTT
TTTT---------ACCC-AAGAATAAAAG--AGAAGAATATTTATCTAATATCTCCTGTCTCCTAAGTGGT
>Myotis_myotis
ATGAGTAAGTA-----AGGCTCAATTCTGTTGGGGACTCTTTGAGAAATGGTGTAGA---CTATGCCTCA--TTTATTT-
------------TTCTTTTCTTATGGTGGACTTTTTAAAATATTGAGGTATAATTGACATAT-ACCATTATATTAGTTTC
AGCTGTACAGCGTAATTATTTGATATA-----------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------TGTATATATTGT--------------
-------GAAATGATCACCACAATAA-GTCTAGCTAAACT-TCCATCAC------TGG---ACTATGCCTCA---TTTTT
TTTT---------ACCCAAAAAATAAAAG--AGAGGAATATTTA---------------------AATGGT
>Rhinolophus_ferrumequinum
GTGGGTAAGTA-----AGGCTCAATCCTGTCAGGG-CTCTTTGAGGAATGGTGTAGA---CTATGACTCT----TCTTT-
------------TTTGTTT--------------------AACTTGAGATATAATTGACATTT------TATATTAGTTTC
AGGTGTATACCATAATGATTTGATATACAGAGGGTGCCAAAAAGATGTCTACACATTTTAAGAAAGGAAAAAACTCTATT
AAAATTCTAATTATATATACCGATAACAAAAGATGATGCATACAAGACACATTTGATTTCTGCCGTTACAAGAGATGCTC
AAAGTGATTACCATCAGCATAATTTGAAAACAGGTTTTTTCCTTTCTTAAAATGTGTATACATTTTTTTCGGCACCTTCT
GTATATCAAAATGATCACCACAATAA-GTCTAGGTAAAA--TCCATCAG------TGG---ACTATGCCTCATTTTTTTT
TTTT---------ATCC-CAAAATAAAAG--ATAGGACTATTTATCTGATGGCTCCCATCCCCTATCTGGT
>Uropsilus_gracilis
GTGGGTAAATA-----AGGTTCATTCTCTTTAGGAACTCTTTGAAGAATGGCATAGT---ATATGCCTCA--TTTTTGT-
------------TTATTTTGGCATGAACACTTT------TAATTGAGATATAATTGACATAT-AACAATACAT-------
--------GACACAATGATTCCATGTG-----------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------GGTACA-AATGC--------------
-------AAAATAATCATTACTGTGA-GTCTAGTAAGCA--TTCTTTGC------TGA---ACTATGC---------TTT
TTTT---AAAAAAACT--ATAAAT--AAG--ACAGGAATATTTTTATACTGATTCCTGCTCCCTAAGTGGT
>Solenodon_paradoxus
GTGGCTGAGTCTCGTTGGGCTCCACCCTACTAGGGAATCCTTGAGGAATGGTATAGA---CTATGTCTTA--TTTTGGG-
------------------GGGAATGGACTTTTTA-----AAATTGAGATATAATTAACATAG-AACATTCTATTA-TTTC
ATACATACAATGTAATGATTTGGCATT-----------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------TGTATGTATTGC--------------
-------AAAACGATGACCATAATTC-ATCTAGGTTGCA--TTCATTGC------TGG---ATTTTTCT-----------
-------------ACTC-AAGAATAAAAG--AGAGAAATATTAATCTAGTGTCTCCCATCCACTAAGTGGT
>Canis_familiaris
GTG--TGAGTA-----AAGCTAAGTCTTACTGGGGATTCATTGAGGAATGATATAGA---ACATAACTCA--TTTGTTA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------ACCC-AAGAATTAAAA--AGAGCAATATTTATCTGATGGATCCCTTCCCTTAAGTGGT
>Felis_catus
GTG----AGTA-----AGCCTCAGTCCCACCAAGAACTCATTGAGGAATGGTGTAGA---ATATAA-TTA----TGTTT-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------ACCC-AAGAATAAAAG--ACAGCAATATTTATCTAATAGGTCCCATCCCTTAAGTGGT
>Manis_pentadactyla
GTAGGTAAGTG-----AGACTCATTCCTACTGGGGACTC--TGAGGAATGATTTAGA---CTATGCCTCA--TTTGTTT-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------AGCA-AAGAATAAAAG--AGAGGAATATTTATCTGATGGCTCCTGTCCCCTAAGTGGT
>Sus_scrofa
ATGGGCAAGTA-----AGGTTCCGTCCCACTGGGGACTC--TGAGGAATGGTGTAGA---CTCTGCCTCA--TTTTTTT-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------ACCC-AAGAAGAAAAGAGAGAGCAATATTTATCTAATGGCTCCCATCCCTTCAGAGGT
>Tursiops_truncatus
GTA-----ACC-----AGCTGTAATCCCATGGGGGATTC--TGAGGAATGGTCTAGA---CTATGCCTTA-TTTTTTTT-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------ACCC-AAGAATAAAAGAAAAAGGAATATTTATCTAATGACTCCCATCCCTTTAGAAGT
>Homo_sapiens
GTGGGTAAGTA-----AACCTCAGTGCCACTAGGGATTGTCTGAGAAAAGGTATCAA---TTACACCTCA--TTTTTTA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------ACCC-AAGAATAGAAG--AAAGGAGCATGTATATAATGCTTCCCATCCC----GTAGT



Bat99_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
---GCCTTAAAAAAGAAGGAAATCCTGCCATTTGTGAC-AACATGGATGAACCTGGAGGACATTATGCTAAGTGAAATAA
GCCAGGCACAGAAAGACAAATACTGCATGATCTCACTTATATGTGGAATCT-------------------------AAAA
AAGTCAAACTCATAGAAGCAGAGAGTAG-AATGGTGGTTGCCAGGGGCTGGGGG--------------------------
----------GTGGGGGAAATGGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGA
GATCTAATGTACAGCATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAG
TGTTCTCACCACACACAAAAAAATGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCA
CAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCT-CAA---
TAAAGCTGGAAAAA------------------------------------------------------------------
---------------------------
>Sus_scrofa
TTAACTCAGACATTTTCTATTTTTTGAGAA-AGCTTGG---CTAGAGATGATC---AAAA---GTCTAGGAAAAAAGGGA
---------------------ACCCTATCATTTGC----AACATTAACGGACCTTAAGGGCATTATGCTAAGTGAGGTAA
GTCAAAGAAAAA-------GTACCATATGTTCTCACTTATATG-ACAATTTAAAG-CAAAACAAAAACCAAAGAACAAAA
TAAGCCAACTCATATATACAGAGAACAGAATTGGTGGTTGCCAGAGGTAGGGGG--------------------------
------------------------TGGGGGTGGGTCAAAAGGTACAAACTTCCAGTTAGGAA------ATAAGTCCTTGG
GATGTAA-GTATAGCATGGTGACTAAAGTTAAAAATACTGTATTGTATATGGGAAAGTTGCTAAGAGAGTATATCTTCAA
AGTTCTTATTACAAGAAGAAAAAGTGTAACTATGTAAGGTGATGG--ATGTTAACTACACTTATTGTGGTGAGCATTTCA
CAATACACATAAACATCAAATCATTATGTTGTACACCTGAAACTAATAGAATGT-TATATGTCAATTTTATCT-CAA---
TAAAT------------AAGGTG----------------AT---GGTTCTA-----GCTCTTGACCTTTTTG----TATC
AAGTGTTAGAAAACAGGCATAGTCAAT
>Tursiops_truncatus
TAGACTCAAACATTTTCTATCTTTTGAGACTAGTTTGG---TTGGAGATGATC---AAAA---GGCTATGAAAAAAGAAG
-------------------AAGTCCTACCATTTGCAAC-AATATGAATGGACCTTAAGGGCATTATGCTGAATGAAGTAA
GTCAGACAAGAAA----AAGTACCATATGTTCTCACTTTTATGTGCAATCTAAAAGGAAAACAGAAACAACA----AAAC
TAACCAAAGTCATATATACAGAGAACAG-ATTGGTGGTTGCCAGGGG--GAGGG--------------------------
----------GTGGGTGAAATAGGTGGAGG-GGGTCAAAAGGTACAAACTTCCAGTTATGAA--ATACATAAGTCTTGGG
GATGT-ATGTATGGCATGGTGACTATAGTT-AATATACTATATTGTATATGTG-AAGTTGCTGAAAGAGTAGATCTTAAA
AGTTCTCATCACAAGAA-AAAAATCGTAACTATGTAAGGTGACGG--ATGTAAACTAGACTTTCTGTGGTGATCATTTCA
CAATACACACAAATATCGAATCATTATGTTGTACACCTGAAAC--ATATAATGT-TATATGTCAATTATTTATGCAG---
TAAA-------------AAAAGACAATGG---ACGTAGAAA---TGTTCTA-----CCTCTTGATCTTTAAG----TATC
AATTGTTAGAAAACAGTCATAGTCAAC
>Myotis_myotis
TTGACTTAAACATTTTCTATTTTTTGAGACTAGCTTGG---CTAGAAATTATC---AACA---GGCAATGGAAAAAGAAG
------------------GAAGTCCTGCCATTTGTGAC-AACATAGATGAACCTTGAGGGCATTATGTTAAGTGAACTAA
GTTAGATAGAGAAAGACGAATGCTGTATGATCT----TATATGTGGAATCTAACA-CAAAACAAAAC---------AAAA
GAACTAACTTCATAGATACAGAGAACAT-ACTGGTGGTTGTTAGAGGTAGGGTGTGTGTGTGTGTTGTGTGCTGTGTGTG
TTTGCTGTGTGTGTGAGAAATGGGTGAAGG-GGGTCAAAAGGTACAAACTTCCAATTATAAA--ATAAATAAGTTCTGGA
GATGTAATGTACAGCATGGTGGTTACAGTT---AATATTTTATTGTATGTTTGCAAATTGCTAAGAGAG---ATCTTAAA
AGTTGTCATCACATGAA-AAAAATTGTAAATTTGT--GGTGATAG--ATGTTAACTAGACTTATTGTGGTGATCATTTTA
CAATATACA--ACTATCAAATCATTATGTTGCACTTCTGAAATTAAT---------ATATGTTCATTGTATTT-GAA---
TAAAA------------AGAAAACAATGG---AAATAGAAA---CTTTCTA-----TCACTTTACCTTTATG----TATA
ACATGTTGGAAAATAAATATGGTCAAT
>Rousettus_aegyptiacus
TTGACTCAAATATTTTCTATTTTTTGAGACTAGCTTGG---CTAGAAATGATC---AAAA---GGCAATGAAAAAAGAAG
------------------AAAGTCGTGCCATTTGTGAC-AACATGGATGGGCCTTGAGGGCATTATGCTAAGTGAAATAA
GTTAGGTAGAAAAAGACAAAAACTGTATGATCTCACTTATATGTGGAATCTATAACAAAAACAAAAACGGA-----AAAA
CAACCCAACTCATAGATACAGAAAACAG-GTTGAGGGTTGCTAGAGGAAGGGTAT-------------------TAGGGG
TAGGGCATGTGTGTGGCAAAGTGGTTGAAAATGGTCAAAAGGTGCAAACTTCCAGTGATAAA--ATAAATAAGTTATAGG
GATGTAATCTACAGCATGGTGTCTATAGTTATTAATACCATATTGTACATTTGAAATTTGCTAAGAGAGTCAATCTTAAA
AGTTGTCATTACATAAAGAAAATTTATATCTATGCATGGTGATGA--ATGTTAACTTGACTTATTGTG-TGATCATTTTG
CAATATATACAAATATTGAATCATTGTGTTGTACTCCTGAAACTAATGT--------TATGTCGATTCTATCT-CAG---
TAAAA------------AGAAGGCAATGT---AAATAGAAA---CTTTCTA-----CCTCTTTACCTTTATA----TATA
ACGTGTTAGAAAACAAATGTAGTCAGT
>Condylura_cristata
ATGACTCAAATATTTT-TGTTTTGTAAGACAAACAAGGTGACTAAGAATGATG---AGAGAGA-GAGAGAGAGAGAGAAG
------------------GAAATACTGTCATTTGAGGCAAAAAGGAATGGAACTTGAGGGTACCATGCTAAGTGAAAT-A
GTAATTCAAAAA-------------CATGATTTCAGATA-----------------------------------------
-----------------ACAGAGAATAG---------------------AAGGA--------------------------
-------------GAAGAAATGGGTGAGAG-GGATCAAAATGTACAAAATTCCAGTTACATA---TAAATTAGCGTTGGG
GATGTGATACACAACATGGTGACTCTAGTCTCAAATAC-----TGTATATTTGAAAGTTGCTAAGGAATAAAATCTTAAC
TATTCTTTCTAT--------------------TGT---GTGTTGG--ATGGTAG-----CTTATTATAATTATCATTTCA
CAATATATATTTTTATTAAGTCA-TATGTTGTACACATAAAATTAATATAATGTATATATACCCATTATATCA-CAAAAC
TAAAGA-----------AAAGGGTAATGGAAAAGGTAGAAA---TGCTCTA-----GCTCTTCACCTTTATG----GATA
AAGTGTTAGAAAATAG--GCAATCAAT
>Uropsilus_gracilis
GTGACTCAAAC-----CTGATTTGTATGACTAGGTGA----CCAGGAATGATT---AAAAAAATGCAATGAAAAAAGAAG
------------------GGAAATTTGTCATTTGAGAC-AAAATGAATGGA--TTTGAGGTAGTATGCTAAGTGAAATAA
GTCAGATATAGAAAGACAACTACTACATGATTTCACTTATATGTAATATCTGACA---ATACAAAAATCAAA----AATG
------AACTCACAGATA-ACAGAACAG---------------------AAGGA--------------------------
----------ATATACAAACT-------------TCAAAACCCACAAACTTCCAGTTAGAAA---TAAATATGCCTTGGG
GATATGATGCACAACATGGAGACTGTATTTTAAAATA-----TTGTGTATC--AAATTAACTAAGAAAGAAAATCTTTAA
TGTTCATGTTATGTTT----------------------GTGATGG--ATGCTAA-----CTTATTGTGATGATCATTTGA
TAATACTTACCTTTATCAAGTC--TATATTGTATAGCCAAAACTAGTAATA-----ATGTATTCATTATATCT-TAATAC
TAGA-------------AAAAGATCATGCAA---GTAGAAA---TTTTCTA-----CCTCGTCACCTTTAAG----GATA
GAGTGTTAGAAAATAA--GCAATCAAT
>Canis_familiaris
TCAACTCAAACATTTTCTATTTTT-GAGACTAGTTGGG---CTAAAGATGGTC---A-AA---GGCAATGCAAGTGGAAA
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TGTGGTAGAATGTTTCGTAATCTTTCTG----TATA
AAGTGTTAGAAAA------TAGTCAAT
>Felis_catus
TTGACTCAAACATTTTCTATTTTT--AGATTGGTTGGG---CTAACGATGACC---AAAA---GGCAATGGAAGTAGAAA
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TATTCTA-----CCTCTTTATCTTTGTG----TATA
AAGTG-------AGAGGCATGGTGCAT
>Manis_pentadactyla
TTGACTCAAACATTTTCTATTTTTCGACATTAGTTGGG---CTAGAGATAATC---AGAA---GACAGTGGAAGTAGAAA
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TATTCAGT----TTTTTTTACTTTTATGTATATATA
AAGTATTAGAAGATAGGCACAGTTAGT
>Equus_caballus
TCAACTCAAATATTTTCTATTTCTTGAGCCTAGCTGGG---CTAGACTTGATC---ATAA---GGCAATGGACGTAAAAA
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------CTTTCCA-----TCTCTTTAACTTTATG----GATA
AAGTGTTAAAAAATAGGTATAATCAAC
>Ceratotherium_simum
TCGACTGAAACATTTTTTATTTTTTGAGACTAGGTGGG---CTAGACATGATC---ATAA---GGCAACAAAAGTAACAC
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------CTTTCTA-----CCTCTTTACCTTTATG----GATG
AAGTGTTAGGAAATAGGCATAGTCAAT
>Homo_sapiens
TTGACTTAAATATTTTCTATTTTTTGGAACTTGCCGGG---CTAGAGATGATC---AAAT---GGCAATGGAAGTAGAAG
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------CTTTCTA-----CCTCTTTATCTTTATG----GGTA
GAGTGTTAGAAAATGGGTGTAGTCAAT



Bat102_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
------------ACACAAAAAAATGGTAACTATGTG-AGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTC
---ACAATGTATACGTATATCAAAACATCACGTTGTACACC-TTAAATATATACAATTTTTATTTGTCAATTATACCTCA
ATAAAGCTGGAAAAA-----------------------------------------------------------------
----------------------------------
>Canis_familiaris
GTCCGGTTCATCTCTGCCTCAGTGGCAGCATTAAATTCAGCACCTAGTCATGGCCCAGAACTCATCTGG---ATAAACAA
CGAA--TGA---------TTTAAT--TATCTCTATG-AGGTGGTGG--GTGTCAATTACACTTATCGTGGTCATCATTTC
---ACAA--TATACAGAAGTCAGACCTTTACGCCATATCCT-TGGAACTCATACAG-TGA--TGTGCTGATTATATCCCA
GTAAAAGCGGGGAAACAAAACCCCCAAAACAAAATAT----AACAAAAAG------GA---ATGAACACAAGTGGGGTA-
--AAGACTAGCTCTTCTTCAGCGCTTGGCTCCCA
>Felis_catus
GTCCAGTTCG-----------------------------GCACCTAGTAACGACCCAGAACTCATGTGG---ATAAACAA
CGAG--TGA---------CTTCAT-GTATCTATATG-AGATGACAG--ATGTCAACTAAACTTACTGTAGTGATCATTTC
---ACAA--TATACCCAAGTCAGACCTTTATGCTGGATGCT-TGAAACTCATACAG-TGAGGTATGTCAATTATAGCTCA
ATAAAACTGGGAAAAC---ACCCCCAAAACAAAACAC----AATAAAAAT-GAA-TTA---ATGAGCACAAGTAGGGTG-
--AAGACTAGCTCTTCTTTAGCTCTTGGCTCCCA
>Manis_javanica
GTCTGATTTATCTCCGCCTCTGCTGCAGTGTTAAATTCAGCACCTAGTAATCACCCAGAAAGCATTTGG---ATAAACAG
TGAA--TGA---------TTTATT-GTATCTGTATGAAAATGATGG--ATGGTAACTAAATTTATCATGGCAATCATTTC
---ACAA--TATGTGTAAGTCTAGCCCTTATGCTGGTTTTTAAAAAACTCATACAG-GAATGCATGTCAACTATATCTCA
ATAAAACTAGGAAAAGAAACCCCCAAAAAACGAAAAG----AAAAAAACACAGATTGA---AGGGACACAAGTGGGATG-
--AAGAGCAGCCCTTCTTTAGCTCTTGGCTCTCG
>Sus_scrofa
GTCCAGTTTCTCTTTGCCACAGCTGCTGCATTAAATTCAGCACTTAGTAATCACCCAGAAGACATCTGG---ATAAATAA
AAAAAGTGA---------ATTGTT-GTATCTATATG-AGATGATGG--------------------GTGGTAACCATTTC
AATACAA-ATATATGCAAGTCATACCTTT-------ACACT-TGAAACTCCTGCAG-GGAGGCATGTCAGTTTTATCTTG
TTAAAACTAGAATACAAAACAAACACCAACACCCCTCC---CCCAACAAT-GAA-TGA---ATGCACAC-AGTGG-AT--
--AAGACCAGCTGTCCTTTAGCTCCTGGCTCCAG
>Bos_taurus
GTCCGGTTCATCTTTGCCTCTGCTGCAGTATTGAATCCAGCCCCTAGTAATTGC------------TGG---ATAAACAA
TGAA--TGA---------TTTATT-GTATCTATAGG-AGATGATGA--GTGTTAACTAAAC------------TCATTTC
---ACAA----TATTTTTGTCAAACCTTTATGCTGGACTCT-TGAAACTTACACAG-TGAGATACGTCGATTACATCTCA
ATTTAACTGGAAAA---------CAAAGATAAAGCCCC---TCAAAGGAT-GGA-TGC---ATGAACACAAGTGGGATA-
--A--ACTAGCTCTTCTTTGGTTCTCGGCTCCCA
>Myotis_myotis
GTCCCATTCACCTTTGCCTCCGCGGCAGCAT--------------------CACCACGCAAACATTTGG---GCAAACAA
TAAA--TGA---------CTTACT-GTTTCTCTGTG-AGATAATGA--ATAGTCACTGAACTTGTGGTGGTGATCCTTTC
---ACAG--TATATGTAAGTCAAAGCTTTATGCTGGACACT-TGAAACTCAAACAG-TTATGAATGTCAATTATACCTTA
ATAAAACTGGAAAAAA---CTCCCCCAAACAG---------AAACAGAAC-AGC-T-A---ATGAAGAT-AGTGGGAGA-
--AAGATGAACTCTTCCTTCACTCTCAGCTCCCA
>Rousettus_aegyptiacus
GTCTGATTCTTCTTTGCCTCAGTGGCAGCATTAGATTCAGCACATAGTAGTCACCTAGAAAACATCTGG---AT--ACAC
TGGA--TGG---------TTTACT-GTATCTGTATA-AGATGATGG--GTATTAACTAAACTTATGGTGGTAATCACTTC
---ACAA--TGCACGTAAGTCGAATCTTTATGCTATATACT-TAAAACTCATACGA-TGATGTATGTCAGTTGCATTTTG
ATAAAACTGGGAAAA----ATCCCTAACCCCAAA-------CCCAAAAAC-AAA-ACT---ATGAACACAAGTGGGATA-
--AAGACCGGCTCTTCTTCAGCTCTTGGGTCCCA
>Equus_caballus
GTCTGATTCATCTTTACCTCAGCTGCAGCATTG-----------TGGTAATCACCCAGAAAACATCTGG-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------ATAAACAAT-GAA-TGA---GGGAACAC-AGTCAGATA-
--AAGACCAGCTCTTCTTCAGCTCTTGGCTCCCC
>Ceratotherium_simum
GTCTGATTCATCTTTGCCTCAGCTGCAGCATTGAATTCAGCACCTAGTAATCACCCAGAAAACATCTGG-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------ATAAATAAT-GAA-TGA---GTGAACAC-AGTGGGATA-
--AAGACCAGCTCCTCTTCAGCTCTTGGCTCCCC
>Condylura_cristata
GTTCATTGCATCTTTGCCTCAGCTGTGGCATTAAATCC-GCACTTTGTAACCACCCAGAAAGCCTGTGG-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------ATAAACAAT-GGG-TGA---GTG-ACCT-GGTAGGACA-
--GAAACTAACTCTTC---AGCTCCTGGCTGCAG
>Uropsilus_gracilis
GTTCGATGCATCTTTACCTCAGCTGCAACATTAAATCCTACACCTAGTAGTCACCCA-AAAGCCTCTGG-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------ATAAACAGT-GAA-TGA---ATG-----ACATGGGATA-
--CACACTAGCTCTTCCTCACCTCTTGGCTCCAG
>Homo_sapiens
GTTCAATTTATCTTTGCCTCAGCTGCAGCACTA-ATTCAGTAC----TAAGCGTCCAGAGAATGTTTGG-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------ATAAACAAT-TAG-CGA---A-GAACTCAACCAAGATAA
AGAAGAATAGTTCTTCTT-AGCTATTGGCTCCAG



Bat109_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
-TTTTTCCAGCTTTATTGAGGTATAAT------TGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTT
GATATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCAC----------------
-----------------------------------------------------------------------------
>Sus_scrofa
AAAGAATTGGAAAGTATAGAT--TGTCTCACCA-TCTCC----TATATACTTAATACTT----TTTACTGATTTATTT--
----------------AGAG--ACAGT------TGACA----GACATTATATTAGTTTCAGGTGTATAATATAATGATTA
AGTATTTGTATATATTGTAAAATGATC---ACAATAAGACTAGTTAACAT--CCAGA----------ATTAC--TTATTT
ATTT---AATA-AAGATTTT----TATAGCTC-TGGTTTGTGCCAGGCACTGTTCT---ACCTTTACAAATACAAAC
>Bos_taurus
AAAGAACTAGAAAGCATGGATCATGTATCACCA-TCTGT----TATACACTTAACATGTA---TCAAT----TTATTT--
----------------AGAGGTAACATATGATATGATAT---GATATGATATTAGTTTCAGGTATACAACATAATGATTT
GATGTTTGTGTATTTTGCAAAATGATCACCACAATAAGTCTAGTTAACAT---CA---------------ACAATTACTT
ATTT---AACA-AAGACTTT----TACATCCCCT-----GTGCCAGGCTCTATTCT---ACCTTTACAAATAAGAAC
>Equus_caballus
AAAGAACTAGAAAGCATAGATCATGTATCATAT-TCTATT--ATATATACTTAATACTTA---TTTATTCATTTATAT--
----------------CAAGGTATAAT------TGACATAT-AACGTGATTTTAGTTTCAGGTATACAACATAATAATTG
GATATTTGCATATATGGCAAAAAGATCACCACAATAAGTCTAATTAACAT--CCAGA-----------TTACC-TTATTT
ATTT---AGCA-GAGACTTT----CATAGCC-TTGGTATGTACTGGGCACTGTTCC---GCCTATACAATTATGAAG
>Ceratotherium_simum
AAAGAACGAGAAAGCATAGATCATGTATCACCA-TCTAAT--ATATATACATAATATTTA---TTTATCCATTTATAT--
----------------TGAGGTATAAT------TGACATAT-AACATGATATTAGTTTCAGGTGTTCAACATAATAATTG
GATATTTGTATAGATTGCAAAATTATCACCACAATAAGTCTAATTAACAA--CCAGA----------TTCAC--TTATTT
ATTT---AACA-AAGACTTT----CATAGCCCTTGGTATGTACCAGGCACTGTTCC---ACCCTTACAAATATGAAC
>Myotis_myotis
AAAGAACTAGAAAGCATTAATCATGTATCATCTATTTAT----TATATACTTAATATTTA---TTTATTTACTTATTT--
----------------AGGAGTATAAT------TGACATAT-AACATTATATTAGTTTCAGATGTACAACCTAGTGATTC
AAAACTTGTACATACCGAGAAATGATCACCACAATAAGTCTAGTTAACAT---TGTA----------TTTAC--TTATTT
ATTT---AACA-AAGACATT----TATAGCTCGTGTTATGTGCCAGACACAGTTTTAAGAATTTTACATATATGAAC
>Rousettus_aegyptiacus
AAAGAATTAGAAAGAGTGGATCATGTATCACCA-CCTATGTAGTATATATTTAATATTTA---TTTAT----TTATTT--
----------------AGAAGTATAAT------TGACATAT-AACATTATATTAGTTTCAGGTGTACAACATAGTGATTC
AGTATTGGTATATATTGTGATATGATCACCACGATGAATCTAGTTGGCAT---CAAA----------TTTAC--TTAGTT
ACTT---AACAAACCACATT----TATAGCT-TTGTTATCCACCAGGTA-----CTAAAAACTTTACAAACATGAAC
>Canis_familiaris
AAAGTACTAGAAAGCATAGGACACGGATCACA--TCTAT----TATATATTTAATATTTA---CTTATTTATTTA-AC--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------GATA-AGGATCCTACGATAGGGTCCAAGGATATAGCCAGGCACTGTTCTAAGAACTTTACAAATATGAAC
>Felis_catus
AAAGTACCAGAACGCATAGATCATGCATCGCTC-TCTCT----TATATACTTAATATTTC---TTTACTTATTTATTT--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------AACA-AAGACTTT----TATAGCCCTTAGTGTGTGCCAGGCACTGTTCTAAGAACTTTATAAATATGAAC
>Manis_pentadactyla
AAAGACCTACAAAGGACAGATCATGTATTACAA-TCTAT----AATGTATTTACTACTGA---TTTATTTATTTATTT--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------AACA-AAGACTTT----TATAGCCCTTGCTACGTGCCAGGCAGAGTTCTAAGAATTTTCCAAATACGAAC
>Condylura_cristata
AAAGAACTAGAAAGTATAGATTATGTATCACCG-TAGAC----TATATACTTACTG--TA---TTTATTTATTTACTT--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------CACA-AAGAAATG----TATATCCCTT-----------GGTACTATTCTAAGAACTTTATAAATATGAGC
>Solenodon_paradoxus
AAAGAATTAGAAAATATTGATCATGTACTACCA-TCTAT----TATACACTTAAAGTTTA---TTGACATATTTACTT--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------AACC-AAGACTTT------GAGTCATTCACATGTACCAGGCACTGTTCTAAGAACTTTACAAATAAGAAC
>Cavia_porcellus
GAAGAATGAGAAAGCAT-----ATATATTACTA-TCTGT----TATATACTTACAATCTA---TTCA--------CTT--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------AACA-AA-ACTATA---CACAGTCCAAGTTGTATGCCAGGCACTGTCCTAAGAGTTTTATGAATAAAAAT



Bat113_LINE

>L1MA9_3END
---------------------------------------------------------------------------GTGAT
GGATATGTTAATTAGCTTGATTGTGGTAA---TCATTTCACA--ATGTATACGTATATCA--------------------
----AAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA----
--------------------------------------------------------------------------------
-------------------------------------------------
>Canis_familiaris
TAAGGAG-TTGCTCAAACTGGAAGACAGAGTTGGAAAAAAGAACAAAAGAGC---AAGAGAAGTGAGCGCGG--------
-----GGCCTACTG---------TGGTGA---ACGTCT-GCA------------ATAGTG--------------------
----AATCATTACATTGTACCCCTGAAACTGGCGTGATGT---CATGTCAACTATACTTGAAGAAGAAAAAA-------A
GGAAGAGGAGGAGGAAGGGGGGGGGGAAGGAG---AAGAAGAGTTAGTG-CGG---TGCCGAATGGGGCAGGGCTC-GCA
CTCACTGTCAGGCATTTGGAATC-CTCCGG-CAGGAAGGGTGACGTCAA
>Felis_catus
TAAGAAACTT-------TGAGAATACAGAGTTGGAATAAAGAACAACAGAGT---AAGAAGAGCTAGCATGG--------
-----GATTTATTG---------TGGTGA---ACATTTTATAAGATATACACAAAGGCTG--------------------
----AATCATTACATTGTACACCTGAAACTGGTGTAATGT---TATATCAGCTACGCCTGAAGAAGGCAGAGCTCTGACT
GGAGGGGGAGGAGGAGGAGGAGAGAAAG-------AGGATGANNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>Phataginus_tricuspis
TGAGAAGTTTACCCAAACTGGGATAATGAGTTGGAATAAAG----AAAGAAT---AAGATAAGTTAGCATGA--------
-----GATTTATTA---------TGGTGATATACATTT-GTA------------TAAATGTTTGTATAATATATATAAAC
ATCAAATCATTACATTGTACACCTAAAACTAATATAATGT---TATGTCACTTACACCTCAATTAAAAAAAC-------C
T---------------------------------------CAGTTATTG-TGG---TGCCAGACAGGGCAAGGCCCTGCA
TGCAGTGCCAGGGGTTTGGAATTGATCCTG-TAGGCATGGGGGAGTCAA
>Sus_scrofa
TAAGAGGTTTACTCAAACCAAAACAAAGAGTTGGAATAAAG----ACTGAAT---AACAAGAGCTACCATGG--------
-----GATTTATAG---------AGGTGA---TCATTTTGCA--ATATATACAAATAGCA--------------------
----AATCGTTAAGTTGTACACCTGAAACTAAGATAA------TATATCAATTATACCTCAATAAAAAGGAA------AA
GGAGAAAAAAAAAAAAAA-----------------AGGCAGAGTTAG-G-TGG---TGCCAAAAAGGGCAGGGCCCTGTG
TTCAGGGCCAGGGGTTTGGAAGT-ATCCAA-------TGGTGTAGGCCA
>Bos_taurus
TGAACAGTTTCCTCAGACTGGGACAAAGAGGTGGAATAAAGGAAGACAGATT---AAGAAGAGTTATCGTGG--------
-----GATTTATTTGTTTGTTGTTGGTGA---TCATTTTGCA--ATGTATACAAATACCA--------------------
----AATCATTAAGTTGTACACCTGAATCTAAGGTAATGT---TGTATCAATTATACCTCAATTAAAACACACACACACA
CACACACACACACACACACA---------------CACACAAAGCAATG-CGG---TGTCAAACAGGGCAGGACCCTGCA
TTCAAGGTTAGGGATTTGAAACACATCTAG-GAGGGACAGTGCGGTTGA
>Myotis_myotis
TGGGAATTTTACTCAAACTGAGTCAAAGAGTTGGAATAAAG----AAAAAAT---AAGA---GTCAGTGTAA--------
-----TACTTCTTA---------TGGTGA---TCATTTTGCA--ATATATACAGATACCG--------------------
----AATCCTTACATTGTACACCTGAAACTAATATAATGT---TGTGTTAATTACACCTCAATTAAAAAAA---------
-----------------------------------AAAAAAGGTTAGTG-TGC---TGCCAAATGGGGCAGGGACCTGTA
TTAGGTGTCAGGGGTTTGGAATTAACCCA--TAAGGATAGTGAAGTCAA
>Rousettus_aegyptiacus
TGAAAAGTTTACTCAAACTGGATCAAGAACTTGGAATTAAG----AAGGGAT---AAGAAGTGCCAGTGTGG--------
-----GACTTCTT------------GTGA---TCATTTTGCA--GTATATACAAATATTG--------------------
----AAACATTATACTGTATACCTGAAACTAAAA-----------TGTCTATTACACCTCAATTAAAAAAAAAA------
-----------------------------------AAAAAGAATTATTATCAT---GGTCAAATGTGGCAGGGCCCAGCA
TTCGGTGCCAGGGATTTGGAATTTATCCCATTAAGTATGGTAAAATCAG
>Equus_caballus
TGAGAAGTTTACTCAAACTAGAACAAAGAGTTGGAATAAAGAAAGATAGAAT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------AAGAAGAGTTAGCC-CAG---TGCCAAACTGGGGGGCACCCTGCA
TGCAGTGTCAGGGGTCTGGAATTTATCTCA-CAGGAATAGAGAAGTCAA
>Ceratotherium_simum
TGAGAAGTTTACCCAAACTAGAACAAAGAGTTGCAATAAAG----ATAGAAT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------AAGAAGAGTTAGCA-TGG---TGCCAAATGGGGTAGGGCCCTGCA
TTCAGTGTCAGGGGTTTGGAATTTATCCCA-CAGGAGTAGCAAAGTCAA
>Condylura_cristata
TGAGACGTTTATGCAAGCTGGGTCA-AGAGTTAAAATGAAGACAGATAAAAT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------AAGAAGACTCAGTA-CAG---GACCAGTTG---------------
-------------------------------TAGAAATAGCGAAGTGAC
>Erinaceus_europaeus
TGAGACAGGTACTCAAACTAGGACCAAAATCGGGAATGTGGAAC---GGTAA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------AAGAAGAGTCAGTG-TGG---TGGGG-------------------
--CAGGGCCAGAGCTTTGGGATTTCTCCTT--AGCAATAGTCAAGCCAA
>Homo_sapiens
TGTGAAGTTTACTCGAACTGGGACAAAGAGTTGGAATGAAGAA----AGAAT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------AAGAGGAGTTAGTG-CAG---TGCCAAATGGTGCTGGGCCCTGCA
TTCAATATCAGGGGTTTGGAATTTATACTG-AAGGAATAGGGAAGTCAA



Bat117_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------TTTTTCCAGCTTTATTGAGGTATAATTGACA
AATAAAAATTGTATAT---------------------------------------ATTTAAGGTGTACAACGTGATGTTT
TGATATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTACCATTTTT
TTGTGTGTGGT---------------------------------------------------------------------
-------------
>Canis_familiaris
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNNNN
NNNNN----------------------NNN--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------TTATTTTTAAATGTTTTT----------------ATTGAGATGTAATTGGCA
AATAATATGTCA-------------------------------------------GTTTCAG--GTACAGCATG---ATT
CAATAAATGTATATATTGTGAAATGATCA---CAATAAGTCTAGATAAC--ATCCATCACCACACAAAGTTACAA-----
--------------TT---CTTTTAATTTTT---AAAATTTGTGCAGAATGATA---TAATAGCAATCTTCC---CACCC
---TGGAAAGATA
>Felis_catus
TCTGTGATAAA-TACTTCCGCGGTCTC-TTGGTTGAGATGTTCCTCAATGCATTACTTT----TTCTCCTTAAAGTGTTT
AAAAT----------------------TTT---AAACAATTTTGGGGCGCCAGGGAGCCTCAGTCTAAGGTTCAGCATCT
GACTCTTGATTTCGGCTCAGGTCACGATCTCACGGTTTGTGGGTTCGAGCCCCACACTGGGTTCTGTGCTGACAGGGCAG
AGGCTGCTTGGGATTCTGTCTCCCTCTCTCTCTCCCCATTACAAAAGTAAATAAATCAATACATTCTAAAGTAAATAAAT
AAATAAATATATAATTTTTAAATGGCTTAAAAACTTAAAACTTTTT----------------GTCGAGACATAATTGACA
TATAATATTATATTA----------------------------------------GTTTCAGGTGTACAGCATG---ATT
CAATAAATATATATATTGTGAAATGATCACTGCAATGGGTCTAGGTAAC--ATCTATTACCACAGACAGTTATAAC----
--------------TTTTTTTTTTTACTTTT---TAAATTTGTGCAGAATGATA---CGATAGCAATCCTCCTGGCCCCC
---CAGAACAAAA
>Manis_pentadactyla
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTTGAAAGGTGCC---------------------CTCCTT---------
---------------------------TAT--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------GAAAAAAATTTTTTTTTTC----------------ATTGAGATATAATTGATG
--TAATATTATATTA----------------------------------------GTTTCAGGAATACAGCATAATGATT
TAATGCAAGTATACATTGTAAAGTGATCACCACAATAAATCTAGTTAAC--ATTCATCACCACGCATAGTGACAGT----
--------------TT--TTTTTTAATTTTT---GAAATTTGTGCAGAATGATA---CAATTGCTATCTTCCT-GCCCCC
---CGGAATGAAA
>Equus_caballus
TCTGTGATAAA-CACTTTGGCACACAT----ATTGGGATGTGCCTCACTATTGTTTT------TCCCCCTTAAAGTGTTC
CCTCC----------------------TTT--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------AAAAAAAAAAATT----------------ATTGAGATATAACTGACA
TATGAAATCATATTA----------------------------------------GTTTCAAGTGTACAGCATA---ATT
TGACATCTGTCTATGTTGCAAAATGATCACCACAATAAGTCTAGTTAAC--ATCCATCACCACAC--GGTTACAAA----
--------------TT--TTTCTTA--TGTT---AAAATTTGTGCAGAATGATA---TAATAGCCATCTTCCT-GTTTCT
---TGGAATGAAA
>Ceratotherium_simum
TCTGCGATAAA-CCCTTGGGCAGTCTCTTTGGTTGGGATGTG-TTCACTACTTTTTTTT----TTTCCCTTAAAGTGTTC
CTT------------------------TTT--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------AAAAAGAAATTTTT----------------ATCGAGATATAACTGACA
TATAACATTATATTGTTATATGTCATTATATTGTTTCATTGTACAGCATTATATTGTTTCAAGTGTACGGCACAAGGATT
TGATATATGTATATAGTGTGAAATGACCACCACAAT--GTCTAGTTAAC--ATCCATCACCACAC--AGTTACAAA----
--------------TT---TTTTTTATTTTT---AAAATTTGTGCAGAGTGATA---TAATAGCCATCTTCCT-GCCCCT
---TGGAATGAAA
>Myotis_myotis
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTTGCGATGTGCCTCACTGCTTCTC-------TTTTCCTTTAAGTTACC
CTCC-----------------------TCT--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------AAAAATTAAAAATTT----------------ATTGAAATATAACTGACA
--TAATGTAATCTTA----------------------------------------GTTTCAGGTGTACAGCATG------
------ATGTATATAAGATGAAATGATCACCACACAGAGTACAAATTAT--TT---------------------------
--------------TT--TATTTTTATTTTA---AAAATTTGTGCAGAATGAAG---TAACAGCTATCTTCCT-GCACCC
---TGGAATGAAA
>Rousettus_aegyptiacus
TCTATGATAAG-TACTTTGGCAGCCTCTTTGGTTGGGATGTGCTTCACTACATTTTTTTCCCCCTCCCCTTAAATTCTTC
CTTAC----------------------TTT--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------AAATTATTTTTTAAAAATTTT----------------ATTGAGCTATAATTAACA
CAT---ATTATATTA----------------------------------------GTGTCAT-TATACAATACAATGATT
TATTA--TGTATATATTGTGAAATAACCA---CAATATGTCTAGTTAAC--ATCCATCACCACAC--AGCTACAAA----
--------------TT------ACTATTTTT---TA--TTTGTAGAGAATGATA---TAATAGCCATCTCCCT-GCAACC
---TAAAATGAAA
>Sus_scrofa
TCCATGATAAA-CACTTTGGCAGTCTC--TGGTTG-GATGTAACTCATTACTTTTT-------TTTACCTTAAAGTGTTT
CCCAC-----------------------TT--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------TTTTGTTTTCAATTTTT----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------AAAATTTGTGTAGAATGATATACTAATGGCCATTTTCCA-ATTCCC
----AGAATGAAA
>Tursiops_truncatus
TCTATGATAAAGCATTTTGGTAGTCTCTTAGGTTGCGAT-TGACTCATTACTTTAT-------TTTACCTTAAAGTGATC
GCTCC----------------------TTT--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------TT-TGTTTTCAATTTTT----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------AAAATTTGGCAAGAATGATATACTAATAACCATCTTCCA-GCACCC
----AGAGTGAAA
>Condylura_cristata
TCTATGACTGACAACT--GGCAATATCTTCAGAGGGGATAGGTTTCATTACTATTT-------TCCCCCTTAAAGTTGCT
T--------------------------GCT--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------TC--TTTTTTAATGTTT----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------AAAATGTGTGCTGAATGATA---TAATTATCATCAGCTTGTCTCAT
---TTTAATGAAG
>Sorex_araneus
TCCTTGTCAACCTTTT-----AGTGTCTTTAGTCAAGATGTACATCACTCCTT----------CCCCCCTTACTCTGTTC
CCTCCCCTTCAAAATTAATTAATTAATTAA--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------TTAATTAATTAAATTTA----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------ATGCTTCTGGCAGAATACTT---TTATAATCATATCCCTGTCCCTT
GAATAAAATAACA
>Homo_sapiens
TTTCTGATGAA-------------CACCTTGGTTGAGATGCGCCTCATTACTTTTA-------TTTCCCTGAAAGTATTC
CTTA-----------------------CCT--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------TT--TTTGTTAACTTTT----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------AAAATTTGTGGTAAATGATA---GAATAGTCATTGTTCT-GTCTCC
---CAGAATGAAA



Bat120_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
---------------TTTTTCCAGCTTTATT--------------------GAGGTATAATTGACAAATAAAAATTGTAT
ATATTTAAGGTGTACAACGTGATGTTTTGATATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATAT
CCATCACC-----------TCACATAGTTAC-----CATTTTTTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTA
GCAAATTTCAAGTATA--CAATACAG---TATTATTAACTATAGTCACCATGCTGTACATTAGATCT-------------
------------------------------------------------------------------
>Canis_familiaris
TGGTCCCCTCGAGAACCTTCCT------------------------CTTCA-GAGAAT-GTTTTAGTTACACTTCCA---
GGAACAACTGTA-----------TTATTACT-----------------------ATGTAATTGGCATAG-AACATAACAT
TAGTTTCAGGTATACAACATAATGATTTGATATTTGTATATATTGCAAGAGGATTGCCACAATAAGTCTAGTTA--ATAT
CCATTACCA----------ATACATAGTTACAAAAAAATTCTTTTTCTTGTGATGAGAAGTTCTAAGATCTATTCTCTTA
GCGACTTTCAAATGTA--CCATACAGTGTTATTACTAACTCTAGTCACCATGCTGTACA-----------TGAACAGCTA
TT---GAT-TTACCATTTAA--TTTCTTAGGATCCAGTT-GGACTTTACCTT-------TTTTAAG
>Felis_catus
AGGTGCCCTCATGAACCCTCCC------------------------CATCA-GGGGAT-GTTTTAGTTCCACTTCCC---
ACAACAACTGTT-----------TTTTTGTTTTTTTTTGTTTTTTTAAGTTGAGGTGCAGTTGACATAC----ATTACAT
CAGTTTCAGGTGTACAACATAATGATTTTATATTTATACATATTGCAGGATTATGGCCACTATAAGTCTAGTTA--ATAT
CTATTACCATACATAGTTCATACATAGTTAC--AAAAATTTTTTTTCTTGTGTTGAGGAGGTCTAAGATCTATTCTCTTA
GGAACTTTCAGATATAACAAATACAG---TGTTACGAACTCTAGTCACCATGCTGTACA-----------GGA--AACTA
TT---GAT-TTTCCATTTAG--TTCCTTAGGCT-CAATT-GGATTTCACCATT------TTTAAAG
>Manis_pentadactyla
TAGTCACTTCCAAAGCCCTCCA------------------------CCTCA-GGGAAT-GTTTCTGTTGCACTTGAC---
TGAGCA-TTGTT-----------TTTGTATT--------------------GAGGTACACTTTACATAC-AACATTAC--
-----------GTACAACATAATGATTTGGTATTTGTATGTATTGCAAAATGATCACCACAATAAGTCTAGTTA--ACAC
ACATCACC-----------ATACACAGTTACCCCAAAA--TATTTTCATGTGATGGAGACTTTGAAGACCTATTCTCGTA
GCGACTTTCAAATATA--CAATATAG---TCTTATTAACTGTCATCACCATGCTGTACA-----------TAAACAACTC
TT---GAC-TTTCCATTTAA--TGTCTTTGGCTCCAATT-AGATTTCATATTTG-----TTTTTAA
>Equus_caballus
TGGTCCCCTCCAGAGTCCTCCT------------------------CATCA-GAGGAT-GTTTTGGTTATACTTCGT---
TGAACAACTACT---TTATTTTTTTTTTACT--------------------GAGATATAATTGACATAC-AACATTACAT
TAGTTTCAGGTGTATAACATAATGATTTGATATTT-TATATATTGCAAAATGATCACCACAAGAAGTCTAGTTA--ACAT
CGGTCACC-----------ATACATAGTTAC---AAAAATTTTTTTCTTGTTATGAGAACTTTTAAGATCTGTTCTTTTA
GAAACTTTCAAATATG--CAATACAG---TATTATTAGCTATGGTCACTATACCGTACA-----------TGAACAACTA
TT---GAT-TTTCCATTTAA--TTTCTTTGGCTCCAATT-GAATTTTACATTTG-----TTTTTAG
>Tapirus_indicus
TGGTCCCCTCAAGAGCCCTCCT------------------------CATCA-GAAGAT-GGTTTGGTTGTACTTCAC---
TGAACAACTATT---------TTTTTTTACT--------------------GAAGTATAATTGACATAC-AACATTACAT
TAATTTCAGGTGTA---CATAATGATTCAAGATTTGTATATATCACAAAATGATTACCACAAAAAGTCTAGTTA--ACAT
CTGTCACC-----------ATATATAGTTAC-AAAAACTTTTTTTTCTTGTTAAGAGAACTTTTAAGATCTATTCTTTTA
GCAACTTTCAAATATG--CAATACAG---TATTATTAACTATAGTCACCATGCTGTACA-----------TGAACTACTA
TT---GAT-TTTCCGTTTAA--TTTCTTTGGCTCCAATT-GGATTTCACATTTG-----TTTTTAG
>Myotis_myotis
TGTC-----------CCATCCT------------------------CATCAGGGGGGT-GTTTTGGTTACACTTCAT---
TGAACAACTATA-----------TTTTTATT--------------------GAGGTATAACTGACATAC-AACCTTACAT
TCGTTTCAAGTGTACAGCATCATGATTCAATATCTGTATACATTGCAAAATGATCACTTCAATAAGTGTAGTTA--GTAT
GCATTACC-----------ATACATAGTTAC--AGAACATTTTTTTCTTATTTGGAGAACTTTTAGGATCTATTCTCTTA
GCAACTTTTAAATATG--CATTACAG---TATTATTCACTCCCATCACCATGCTGTACA-----------TGAGCAACTA
TT---GAT-TGCCCATTGAA--TTTCTTCGGCCCCAACT-GGATTTCACATTTG-----TGTTTAT
>Rousettus_aegyptiacus
TGGTCCCTTCAAGAGCCCTCTT------------------------CATCG-GGGGAT-GTAT-GGTCACACTTAAT---
TGAACAACTGCT-------------TTTATT--------------------GACATATAATTGGCATAC-AGTATTACAT
TAGCTTCAGGTGTATGACATAACGATTCAATATTTGTATATATTACAATGCGATCACCACAGTAAGTCTAGGTA--ATAT
CCATCACC-----------GTACA--------------ATTTTTTTCTTATTTTCAGAACTTTTAAGATCTATTCTCTTG
GTAACTTCTACATATG--CAGTACGG---TAATACTGA-----GCCACCATGCCGAACA-----------CCAATAACTG
TC---CAT-TTTTCATTGGC--TTTCTTTGGCTCCAGTT-GGATTTCACATTTG-----TTTTTAG
>Sus_scrofa
TGGTTCCCTCCAGAATCCTTTT------------------------CATCA-AGGCCT-GTTTTGGTGACATTCTAT---
TGAACAACTGTT--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----GAA-TTTCCATTTAA--TTTCCTTGGCTCCAGTT-GGATTTCACATTTG-----TCTCTAG
>Tursiops_truncatus
AGGTCCCCTCCAGAGTCCTGCT------------------------CATCA-AGGCCT-GTTTGGGTGACACCTTAT---
TGAGCAACTCTT--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----GG--TTTCCATTTAA--TTTCCTTGTCTCCGTCT-GGATTTCACGTTTG-----TCTTTAG
>Condylura_cristata
TGGACCCCTTAAGAGCCCTCCT------------------------TATCC-GGGA--------GGTTA-ACTTCAT---
GGAAGGATTAAT--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----GATGTTTCCATTAAATTTTTCTTTGAGTCCAGTT-AGATTTCACATTTATTTATTTTTTGG
>Sorex_araneus
TGGGCCC--TACAAGCCCTCCTAGACCCCCCCGCCACCCCCACAAAAATCC-AGGGTTGGTTTTGGTTACATTTCAG---
CAAACAACTATT--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----GAT-TTTCCATTGAG--TTTCTTTGGCCCCAGTTGATTTTTCACGTTTA-----TTTTTAG
>Homo_sapiens
TGAGCCCCTCGAGAGCCCTCCT------------------------CACCT-AGGACT-GTTTGGGTTATACTTTAC---
TGAACAACTGTT--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----GAT-TTTCTACTGAA--TTTCTTTGGCTCCAATC-AGACTTCATATTTA-----TTTTTCA



Bat121_LINE

>L1MA9_3END
-------------------------------------------------------------------------TGGATGA
ACCTGGAGGACATTATGCTAAGTGAAATAAGCCAGGCACAGAAAGACAAATACTGCATGATCTCACTTATATGTGGAATC
TAAAAAAGTCAAACTCA-TAGAAGCAGAGAGTAGAATG----GTGGTTGCCAGGGGCTGGGGGGT--GGGGGA-------
-AATGGGGAGATGTTGGT--------------------------------------CAAAGG-GTACAAAGTTTCAGTTA
TGCAGGATG-----------------------------------------------------------------------
-----------------------------------------------------------------------AATAAGTTC
TGGAGATCTAATGTACAGCATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTA--AG-AGAGTAGA
TCTTAAGTGTTCTCAC-CA------------------------------CACACAAAAAAAT-------GGTA-ACTATG
TGAGGTGAT-GGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTA
CACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA-----------------------
---------------------------------------------------------------------
>Canis_familiaris
TGGCATATAGTATATGCCAAAAAGCTGTGGCTCATATGGTCTCCACG-CATT---AAAATGGAACC-TTA----------
---------ACATTTTGCTAAGTGA--TAAATCTGACAGGGAGAGGCAAATACTGTGTAATCTCACTTATACATGGAATC
TAATAAAGCCAACCTCA-TAGAAATAGAGAGTACGCTG----GTGGGTGCCAGGGCCCAAGGGATAGGAGGGA-------
-AAT-AGAAGATGTTGGTTAAAGGGCAAAAACTTAAAAAAAAAAAAAAAAAAAAAACAAAGG-ACACAAACCTCCAGCTA
T--AAGCTG-----------------------------------------------------------------------
-----------------------------------------------------------------------AATAAATTC
TGAGGATCTGATGGGCAGCACAGTGACTATAGTAAACAATACTGTCTTATGTACTTGCAAGTTGTTA--AA-AGAGTAGA
TCTGAAATGTTATCAC-CATGCA----------------CACACACACACACACACACACAC-------GATG-ATTATG
TGAGAGGACAAGAAGTGTTAATTAACTTTATAGTGGTAATCATTTTGCAACATGTACGTG------------------TA
CACCTTAAACTTACATA--TGTTATA--TCAATAATATCGCAATAAAGCTAGG------------GGGAAGGACCC-TTA
---AA---AAAACAAAAC--CAAAGCAAGACATGTTATCATTCTA--------------CAGCCACCTG
>Felis_catus
TGGG-------------CAAAAAGCTGTGGCTCAAATGGACTCCAAGATATT---AAAAAGGAGCC-TGA----------
---------ACATTTTGTTAAGTGAAATAAATCATACACAGAAAGGCAAATACTGTACGATCTCACTTATATGTGGAATC
CAATAAAGCAAACCTGA-TAGAAATAGAGAATACGTTG----GTGGTTGCCAGGGCCCGAGGGGT---GGGGA-------
-AAT-GGGAGATGTTGGT--------------------------------------CAAAGG-GCACAAACTTCCAACTA
T--AAGATG-----------------------------------------------------------------------
-----------------------------------------------------------------------AGTAAGTTC
TGGGGATCTGATGTGCAGTATAATGACCACAGTTAACAACACTGCCTTACGTACTTGAAAGTTGTTA--AAGAGAGGAGA
CCTTAAGTGTTATCAC-CATGCATGAACTTGTGCACATGCACACACACGCACACACACACACATACAATGATA-ATTATG
TGAGGGGAT-GGAATGGTTAACTAA--------GGGTTAACATTTTGCAATATATATGTGTATAAAGTCATCACGTTCTA
CACCTTAAACTTACATA--TGTTATATGTCAATAATATCTCAATAAAACTGGGGGGAGGGGT---GAAAAGGACCC-TTA
---AA-AAATGTCAAAAC--A--------------------------------------CAGCCACCTG
>Manis_pentadactyla
TGGCGTATAGCATTTGCAGAAAAGGTGTTGCTGCAATGGACCCCAAG-TATT--GAAAAAGGACCC-TTA----------
---------ACACTATGCTAAGTGACTTAGGTCAGACAGAGAAAGATAAATAGTGCATGGTCTCACTTTTATGTGAAATC
AACAAAAACTGAACT---TAGTAATAGACTAGAT-TTG----GTGGCGGCCAGGGGCTGGGGAGC--AGGGAA-------
-AATAGGGAGATGTTAGT--------------------------------------CAAAGG-GT-TAAACTTCCAGTTA
T--AAGATGAATTCTTTCTGAGAGTGAGCACTTAATATTGTAGACAACTGTCAAAATATTTATGTTGTACACCTGAAACT
AATATAATATTGTCTATCAACTATATGTCAATAAAAAAATGAACAAATAAAAATAAAAATAAAATAAAATAAATAAGTTC
TGGGGATATAACATACAACATGGTGACTATAGTTACCCATACTGTATCATATATTTGAAACTTTGTA-----AGAGTAGA
TCTTAAATGTTATCAG-CA--------------------CACGTGCGCACACACACACACA--------GACA-------
--AGAG----AGAGGTGTTAACTAACCTAATTGTGGTGATCATGTCACAGTACATATATA-----AATCATTACATTGTA
CAGCTTAA-CTTACATG--TGTTACCTATCAATAATATCTCCATAAAGCTGGGGG----------GGAAAGGACCC-TTA
---AA--AACCATAAAAT--CACAGAAGGACATCTCATCAGTCCA------------------------
>Myotis_myotis
TGGTGTATAATAAACGCCAAAAAGCTGTCGCTGAAATGAACCCCAAC-TATT---TAAAAAGGCCTCTTA----------
---------ATATTATGCTAAGTGA----AGTCAGACAGAAAAGGACAGATACTGTATGATTTCACTTACATGTGGAATA
TAGAAGACCCAAACTCA-CAGA--CAGAGAGTAGATGA----GTCGTTGCCAGGAGCTTGTGGGGATGGGGGGCCGAGCA
TAATGGGGGGATGTTGGT--------------------------------------CAAAGG-GTACAAACTTTCAGCTA
T--AAGATG-----------------------------------------------------------------------
-----------------------------------------------------------------------AATAAGTTC
CTGGGATCTAATATACAGCATGGTGAGTATAGTTAACAACACTGTATTAGATACTGGAAAGTT-TTA--AG-AGAGTAGA
TCTTAAATGTTATCACACA---------------------------ACACACATACAAATTAGAAAAGTGATACGTTATG
TGAGGGGAT-GGAGGTATTAACTAACCTTATTGTGATCATCATTTTGCCACATACATACATATCAAATCATCACCTTGTA
CACCTTAAGCTCACATA-------------AGTTATATGCAAATAAAGATAGG------------GGAAAGGACCC-TTA
---AA-AAGCCATAAAAC--CATAGCAGGACATCTTCT---TCCA--------------CATGCACCTG
>Rousettus_aegyptiacus
TGGTGTGTGCTAAATGCCAAAATGCTGTTGCTGAAACGGACCTCGAA-TATT---TAAAAGGACCT-TTA----------
---------ACATTACGCCAAGTGAAGTAAGTCAGACAAAGAAAGACAAATGCTGTATGATTTCACTTACACGTGGAATC
CAAAAAAGCTGAACTCA-CAAGAACAGAGAATAAGTAGCCCAGTGGTTGTCAGGGGCTGAGGGGG-TGGGGGA-------
-AATGGGGAGATGTTGGT--------------------------------------CAAAGG-GTAAAAACTTTCTGTTA
T--AAGATG-----------------------------------------------------------------------
-----------------------------------------------------------------------AATAAGTTC
AAGGGATCTAACGTACGGCATGGTGAGTACGGTGAACGAAGTTGTACTATGTACTTGAAAGCT-TTA--AG-GGAGTAGA
TCTTCAATGCCATCGC-CA------------------------------CACACAAAAAAAT-------GACA-GTTACG
TGAGGGGAT-GGAGGTATTAACTAACCTTGCTGCGATGATCATTTCACATTATATATGTGTGCTGAATTATCACCTCGTA
CACCTTAAACTTACATA--TGTTATATGACAACACTAGGTCGATAAAGTTGGGTG----------GAAAAGGGCCC-TTA
---AC-AAAACGTAAAAC--CATAGCAGGACATCATATCATCCCA--------------CAGCCACCTG
>Condylura_cristata
CAGAGGGCCAAACACACCAAAAG------CCACAGACAGCGCCCAAG-CCTT---CAAAAGGACCC--TA----------
--------------------ATTGA-ACAGGTCAGACAAGGAAGGATGTCCACGCCGTGGTGTCACCAACATGGGGCACA
GGGAGGACTCTAACGCACCCAAAGCAGAA-------------GCTGCTGGCAGGGC----AGGGCCTGGGGGC-------
--ATGGGGAGACGGCGGT--------------------------------------CAAGGT-ATAAACTCTTCCAG---
TGCAAGTCC-----------------------------------------------------------------------
-----------------------------------------------------------------------AGTAAGTTC
T-GAGATCAAATG----ACATGTGGGCTGAGGTTAACAGCATTATCATTTGTATCGGCATTTGAATATTTGCAGAGTAGA
GCT-AAATGTTATATC-TA------------------------------TCCGCACACAGT--------GATA-ATCATG
TGAACAGA--GGGGCTGCTAACTGACCCTACTGTGGACATCATTTTGCAATGCACGCATGT-CCTAATCATCACGCTGTG
CCCCAAAAGCTGGCATC--TATCATCTATCAACAGGATCTCAATAAGGTTGGGGA----------GAAAAGGGCCC--TA
---AG---AACATGCAGCTACTTAGCAGGTCATCTCATCCCTCTG--------------CAACCACCCG
>Scalopus_aquaticus
CAGGGTGCCATGGAGACCAAAAGGC--------------TGACCAAG-CGTT---AAAAAGGACCC--TA----------
--------------------ACTGA-ATAAGTCAGACAAAGACAGACATCTACCACGTGATGTCACTGACACGTGGCATC
AAAAGAAACCCAAGTCA-CAGAAATAGAGAGCTGAATG----CTCTTGACCAGGGC---AGGGGCAAGGGGGA-------
----TGGGAGATGCTGGT--------------------------------------CACAGGTACAAAGTCTTCTAGGTA
T--AAGACC-----------------------------------------------------------------------
-----------------------------------------------------------------------AGCAAGTTC
T-GGGATCTAATG----ACATGTGGACTGTACCTAATAACATCATTATTTTTATTAGTA-TTTGATATCTGAAGAGAGGA
TCTTAAATGTTATACA-TA------------------------------TACACACACAAT--------GATA-ATCATG
TGAACGGAGAGGAGGTGCTAACTGACCCTATTGTGGGCATCATTTTGCAATGCATGCATGTATCAAATCATCATGCT-TA
CCCCTTTAACTGACATA--TATTAAATATCAATAATATCACAATAAAGTTAGGGA----------GAAAAGGACCC-AAA
---AG---AACATAAAACTATATAGCAAGACATCGCATCACTCAA--------------CAGTCACCCG
>Sus_scrofa
TAGTGTTTTGTCTACACCAAAGAGCTGCTGCTGAAATGGACCCCAGG-TATT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------AAAAAGGACCTTTTG
---TAGAAACCCTAAAGC--AATAATTGGGCTGCTTGTTCCGCCCAACCCCCCCCGCCCCCCACCCCCG
>Bos_taurus
TGGTGTTTTGTAAATGCCAAAAAGCTGTGTCTGAAATGACCCTCCCGCATAT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------CAAAAAGACCT-TTA
---TA-AAACCCTAAAAC--AATAACAGGGCATCTTAT---TCCACCCAACCTAGCCCCCAGCTTCCTG
>Equus_caballus
TGGTCTATAATATATGCCAAAAAGCTGTTGCCAAAACAGACCCCAAG-GATT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------AAAAAGGACCC-TTA
---TA-AAACTATAAAAC--CATAATAGGACATCTTATTATTCCACCCAACCTAACCCCGGGCCACCTG
>Ceratotherium_simum
TGGTCTGTAATATACACCAAAAAGCTGTTACTAAGACAGACTCCAAG-TATT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------AAAAAGGACCC-TTA
---TA-AAACAATAAAAT--CATAGTAGGACATCTTATCATCCCACCTTACCTAACACCCAGCCACCTG
>Homo_sapiens
TAATGTACAGTATATACAAAAAAGCTGTTGCTAAAATGGAGCCCAAG-TATT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------AAGAAGGACCC-TTG
---AC--AAACAGAAAAC--CATAGTGGGACATCTGATCATTCCAGCCAACCTAAACCCCAGCCATCTG



Bat125_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------GTGTTCTCACCACACACAAAAAAATGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTA
ATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATAC
CTCAATAAAGCTGGAAAAA-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-
>Canis_familiaris
GATTTGAACCCTGA----CTAGGGGT------------------------------TAAACTAGGCT---AAAA------
AGGGG----------------AATTTTTTAAATTGTATCTATAGGAGATGATGG--ATGCCAGCTAAATGCATTGTGGCA
CTCATTTCAGAG--TATATGTAAACCAAACTATTATGCTGTATACCTT--ACTTATACAG-TAATATATGTCAACT-TTT
CTCAACAAAACTGGAA----------------AAAATCTTTTTGCCCAGAAAAAAA---AAGTAATAAAGAAAGAA----
-----TGCA-TCCTAGTAGGAGAAACAGAAATATAAAAAAATA-------ATTAAAATGCAGGGCACATGGATGGCTCAG
TTGGTTGAACTGCTGACTTGATTTTAGCTCAGGTCATCACCTCGGGATCAGGCTTTGCACTCTGTTTGGGATTCTCTTTC
ATGCTCTCCCTCTGGCCCTCCCCCACCCCATTCATGCATGCACTCCCTCTCTCTCTCTCTCTCTGTGCCAAATAAACAAA
TCTTCTAAAAAATAATTAGAATGTA-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------ATGCTTTGGGAGCA
T
>Felis_catus
GATTTGAACCCAGGTGATCTTGTGATCTGGCCATAGACTCCTGTTCTTCACT-CTATAAACTAAGCT---TAAC-AAATA
AGGGA----------------TTTTTTTTTTATTGTATCTAAATGGGATGATAG--ATGCTAGCTAAATTTATTGTGGTA
CT-ATTTCATAG--TATATGTAAACCAAACTATCATGCTCTACACCTTAAACCTATGCAG-TGATAGATATCAATTATTT
CTTAATAAAACTGGAA------TTTTTATTTTTTATTTTTTTTGCCCAG----------AGAAAATAAATAAAAGA----
-----TGCA-TTCTAGTAGGGGAAACA--AATGT-AAAAACGA-------ATTACAATGCA-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------ATGTA-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------ATGCTTTGGGAGCA
T
>Manis_pentadactyla
GATTTGAACCCCG--------GTGGTCTGGCTTCCAAGCCCTGCTCTTCCCT-CTACAAACTGCGCT---AAAA-AAATG
AAGGG-------------GTATTTCTTTT-TATTATATTTATGTGAGATGATGG--ATGCTAAGTAAACTTATTGTGGTC
ATCATTTCACAA--TATATTTTAATTAAACCATCATGCTGTATGCCTTAAATGTACACAG-TCATATATGTCAATTATTT
CTCAATAAAACTATAA--AA-----TGAATAAACAGTTTTTT--CCCAG----------AAA----AAATAAAGGG---C
TGTTTCCCA-TTCAAGTGGGGGAAACAGAAATGT-AAAAAATA-------ATTAAAATGGA-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------ATGTA-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------ATGCTTTGGAAGCA
T
>Equus_caballus
AATTTGAATCCAG--------GTGGTCTGGCTTCAGAGCCCTGCTCTTTACT-CTACAAACTAGGCT---AAAAAAAATA
AAGGA----------------TTTCTCTT-TATTGTCTCTATATGAGATGATAG--ATATTAACTAAATCTATTGTGGTA
ATCATTTCAGCA--TATATGTAAATCAAACCATCATGCTATATACCTTAAACTTATATAG-TGATATGTATCA----TTT
CTCAATAAAACTGGGA--AAAAAATTAAAAATAAAGCTTTTT--CCCAGAAAATA----AATAAATAAATAAAGGA----
-----CGCT-ATCTAGTGGGGGAAACAGAAATGT-GAAAAATA-------ATTAAGATGCA-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------ACGTAGGGGCCAGCCCCGTGGCCGAGTGCTTAAGTTCGCCTGCTCCACTTTGGCGACCCA
GTGTTCACCAGTTAAGATCCTGGGTGCGGACCTACACACTGCTCATCAAGCCTCACTGTGGTGGTGTCCAACATAGAAGA
ACTAGAATGATCTACAACTAGGATATACAACTATGTATTGGGGCTTTGGAGAGAAAAACAAAAAAAGGGGGGGGAAGATT
GGCAACAGATATTAGCTCTGGGCCAAACTTCCTCACCAAACAAACAAACAAACAAAATGCAATGTAATGCTTTGGGAGCA
T
>Ceratotherium_simum
GATTTGAACCCAG--------GTGGTCTTGCTTCAGAGCCCTACTCTTCACT-CTACAAACTAGGCT---AAAA-AAATA
TAGGA----------------TTTCTTTT-TATTTTACCTATATAAGATGATAG--ATGTTAACTAAACCTGCTGTGGTA
ATCGTTTCACAA--TATGTGTAAATCAAACCATCGTGCTGTACACCTTAAACTTATACAG-TGATGTATATCAATTATTT
CTCAATAAAACTGGAA--AAAAA--TAAATAAACAGTTTTTG--CCCAGAA--------AATAAATAAATAACGGA----
-----CACA-TTCTAGTGAGGGAAACAGAAATGT-GAAAAATA-------ATTAAAATACA-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------ATGCA-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------ATGTTTTGGGAGCA
T
>Myotis_myotis
GTTTGGGACCCAG--------GTGATCTGGCTTCCAAGCCCCACTCTCGACT-CTAAAAACTAGGCT---ACAAAAACCA
CAGG-------------------------------------------ATGATGG--AGGTTAACTAAACCTATTGTGGTA
ATCACTTCACAA--CACATGTGAATCAAGCCATCATGCTGCACTCCTTATACTTATACAG-TGATGTATGTCAATTATTT
CTCAATAAAACTAAAAGTAAACTAAAAAATAAACAGGCTTTT--CCAAA----------AAAATAAAAATAAAGAA----
-----TACA-CTCTAGTGAGGGAAACAGAAATGT-AAAAAATA-------ATTAAAATACA-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------ATGTA-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------ATGCTTTGGCAGCA
T
>Rousettus_aegyptiacus
GATTGGAACCCAG--------GTGATCTGGCTTTAGAGCCTTGCTCTCCACT-CTATAACATAGGCT---ATGA-AAACA
AAGGA-------------TTCTTTCTTTTCTATCTGCATGAGATGAGATGATAA--ATGTTAACTAAGCCTATTGTGGTA
ATTATTTCACAG--TGGACGTGAATCAAACCATCACGCTGTACACCTTAAACTTACACAG-TGATATATGTCAATTCTTT
CTCAATAGAACTGAAA--GA-----CAAAATAACAGGTTTTTTCCCCAATA--------AATAAATAAATAAAAGA----
-----TACATTTTTAGTGGGGAAAACAG---TGT-AAAA-----------GTTAAAATGCA-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------ATGTA-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------ATGCTTTGGGAACA
T
>Sus_scrofa
GATCTGAACATAG--------GTAGTCTGGCTTCGGAGCCCTGCTCGTCACC-CTACAAACAAGGCT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------AAAAAAAAAATAAAGGA----
-----CACA-TTCTGGTGGGGAAAACAGAAGTGGAAAAAAAAAAAAAAAGATTAAAATGCA-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------AGGCA-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------ATGCTAAGGGGGCA
T
>Bos_taurus
GATTTGAACCCAC--------ATAGTCTGGCTCCAGAGCCCTCCTCTTCACT-CTGCAAACTGGGCT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------AATAAATAAATAAAGAA----
-----CATA-TACTAGTGGGGGAAATAAAAATGT--AAAAATA-------GGTAAACTGTA-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------CTGTA-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------ATGTTATGGGAACA
T
>Condylura_cristata
GACCTGAAGCCAG--------GTGGCATGGC-ACTGAGCCCGCCTCTTCACT-TTATAAACCAGGAG-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------AAAA---AGCTAAAAGG----
-----CACA-TTCTAAT--GAGAAGCAGAGGC---AAAAGAAA-------ATTAAAATGCA-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------ATGTA-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------ATGATACGGCACCA
A
>Sorex_araneus
AGCCTG---------------GTGGATAGGC--AGGAGTATTGCTATTTTTTCCTGCAGACTAGACT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------CAAA---CAGTAAAGGA----
-----CACA-TTCTAATGGGGGAAGCAGGAGTGT-AAAAAACA-------GTGCAAGTGCA-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------TGTG-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------GTGAT-------CA
T
>Cavia_porcellus
AATTTGCACTCAG--------GTGACCTGGCTTCAAAGCCCTGCTTTCAACT-CTATAAGCTAAGCT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------ATAA----GAAAAAGGA----
-----CACG-TTCTAATGCGAGACA-AAAAATGTAAAAAAAAA-------ATAATAATTCAA------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------ATGCA-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------GTG-----GGAGTA
T



Bat129_LINE

>L1MA9_3END
--------------------------------------------------------------------------TTTTTC
CAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATATACGTATAC
ATTGTGAAATGATTACCACAATCAAG------------------------------------------------------
---------------------
>Canis_familiaris
TGTATTCAGAG--TTGTTTATGATCTTTGGCTGTCTGCTCTAAAGGAAACTT---GAAAAA--CT-------CCTTTTCT
AAGTTTTATGGAGATGTAATAGACACTT-AACACCACATAAGTTTAAGATGTACGGCTCAATGACTCGACTTTC--ATAT
ATGGCG-AATGGTTG--------------AGAAAACT----CAGTCTTGACTC--GAGCACAAAAGTGTGACATTGTAAA
ATTAAG----TATTTGGGGGG
>Felis_catus
TGTATGCAGAG--TTGTTTATGATCTTCGACTGTCTGCTGTAATAGAAACCT---AGAAAA--AC------TTCTTTTCT
CAGTTTTACTGAGATATAATTGACAC---AGCACTGCACAAGTTGAAGGTGTGGGGCACAGTGACTTGACCTTC--AACT
GTTGTG-AATGATTG--------------AGAAACCT----CAATCTTTACCCACGAACACAAAAGTGTCACATTTTAAA
ATTAAGTAATTTGGGGCGGGG
>Manis_javanica
TATGTAGAGAG--CTCTTTATGATCTCAGGCTG-----TCTAAAAGAAGTGT---AGAAAATGCT------TTTTTTTCC
CAGTTTTATTGGAATACAGTGGACATAC-AGCACTATATAAGCTTAAGGGGTGTAGCATAGTGACTCAACATAC--ATAG
ACTGCAAAATGATTA--------------AGAAAACT----CAATCCTGACCCAGGAACTCAAATGTGTGAAGGTTTACA
GTTAA--------CTGTGGGA
>Sus_scrofa
TGTATGCAGGGAATTGCTTCTGATTTTAGGCTGTCTACTTCAAAAGAAACTT---AGAAAA--CT---CTTTTTTCCCCT
CAGTTATATTAAATTATAATGATCATAT-GGCACTGCA-GAGTTTAAGGTGTTAAGCATCATATATTGATATCC--ATAT
ACTGGGAAATGATTG--------------AGAAAACT----CAATCCCCAAAAAAGAATGCAAATGTGTGAAGGCTTAAA
ATTCAG----TAAGCATGAGG
>Bos_taurus
TGTATGCAA------GTTTCTGATCCTAGGCTGTCTACATCAAAAGAATCTA----------------------TTTTTT
CAGCTGTATTGAATTATAATTGACATAG-AGCACTGTGTGAGTTTAAGATGTACAGCATAATGTATTGATGTAC--AAAT
ATTGGGAAATGGTCA--------------AGAAAACT----CAGTCCCAAAGAAAGAACACAAATGTGTGAAGGATTAAA
ATTAAA----TAACTGTGGGG
>Myotis_myotis
TGTATGCAGAGAGCTGTTAATGATCTTAGGCTGTCCACTCTAAAAGAAACTT---AGAAAA--CT--------TTTTTTT
CCATTTTATTGAGATATAATTGACATAC-AGCACTACAGAAGTTTAAG--------CCTAATGACTTGACATAC--ATAT
ATTGTGAAATGATTG--------------AGAA-ACT----CAATCTTAACCCAAGAACACAACTGTGTGAAGGTTTAAA
ATTAAG----CAACTGTGGTG
>Rousettus_aegyptiacus
TATATGTAGAGAGATGTTTAC-CTCTTAGACTGTCTACTCTAAAAGAAACAT---AGAAAA--CT-----TATTTTTTTC
CAGTTTTATTGAAATATAATTGACATAC-AGCACTATAGTAGTT-AAGGTAGACAGCACAATGACCTGACATAC--ATGT
ATTGTGAAATGATTA--------------AAAA-ACT----CAATCTTGACCCAGGAATACAAATGTATGACAGTTTAAA
ATTAAGTAACTAACTGTGACA
>Condylura_cristata
TTTATGCAGAGAGTTGTTTATGATCTTCCACTGTCTACTCCAAAAAAAACAT---AGAAAA--CT---------TCCCCC
CAGTTTTATTGAGCTATAATTGGCATGCAGTCTCTATAAA-------------CCACATAATGA--TGGCATCA------
-------TATGATTG--------------AAAAAAATG---CAAACTTGGCCCAAGAACACAAATGTGTGAAGGTTTAAA
ATAAAG----TAGCTGAAGAG
>Solenodon_paradoxus
CATATGCAGAGAGCTGTGTATGACATCAAACTGTCTACTCCAGATGAAACTT---AGAAAATGCT--------TTTCTTG
CAGTTGTATTGAGATACAATTGACATGA-AACCCTGTATAAGTATAAGGTATATGGTGTAATGCCCTGATATAC------
--TGTGAAATGATTG--------------AGAAAACA----TCATCTCTGTCCAAGAACACAAATGTGTAAAGGTTTAAA
ATGAAA----TAACTAAGGGG
>Equus_caballus
TGTATGCAGAGGATTGCTCATGATCTTAGACTGTCCACCCCAAAAGAGACTC---AGAAAA--CT---------------
--------------------------------------------------------------------------------
-----------------------------------------CAGTCTTGACCCAAGAACACAAATGTGTGAAGGTGTAGA
ATTAAG----TGACCGTGGGG
>Ceratotherium_simum
TGTATGCAGAGGGTTGTTCATGATCTTAAACTGTCTACCCCAAAAGAAACTT---AGAAAA--CT---------------
--------------------------------------------------------------------------------
-----------------------------------------CAGTCTTGACCCAAGAACACAAATGTGTGAAGGTTTAAA
ATTAAG----TAACTATGGGG
>Homo_sapiens
TACATGCAGAGAGATGTTTAT-----------------CTCAAAAGAAGCTC---AGAAAA--CT---------------
--------------------------------------------------------------------------------
-----------------------------------------CGATCTTAACTGAAGAATACAAATGTGTGAAG-------
----------TCACCGAAGGA



Bat130_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------TTTTTCCAGCTT
TATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTG---TACAACGTGATGTTTTGATATACGTATACATT
GTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTACCAT------TTTTTTGTGTGTGGT
GAGAACACTTAA-GATCTACTCTCTTAGCAAATTTCAAGTATAC-AATACAGTATTATTAACTATAGTCACCATGCTGT-
-ACATTAGATCTCCAGAACTTATTCA------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------TCCTGCATAACTGAAACTTTGTA
CCCTTTGACCAAC--ATCTCCCCATT-----TCCCCCAC------CCCCCAGCCCCTGGC--------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------
>Canis_familiaris
AAAGCAC--TAAATAAATGTTTTTTTACCATTATTATTGAGGA-TACCTAGAAAGCCAAGCA------------------
--------------------------------------------------------------------------------
-----------------------------------------------------TTCTTATTGTTT---------------
-ATTGAAGTATAACTGATAT---AAAATTGTATTAGTTTTAGTTG---TACAAC---ATGAATCAACTTTTGTATACATT
ATGAAATGATCACCATT----GTCTAATTAAC--CTCCATCACTATACATAGTCACAGTAATC--TTTTTTTCTTATTAT
AAGACCTTTTAA-GATCTATTTTCTTAGCA-CTTTCAAAGATGC-AATGCAGTATTATTAACTCTAGTCACCATGCTGT-
-ACATTACATCGCCATAACTTACTTA------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------TTTT--ATAGCTGGAAGTTTGTA
CC-TTTGGCCTC---CTTCACACATT-----TCACCCACTCC---CACCCCACCTCTGGCAACCACCAGTCTGTTC-TCT
ATATCTAAGAGCTTGGTTTTGTTTTATGTTGTTTTGTGTTTTGTTCCTTGTTTTTTTTTTTTTTTA---TTTTTTATTTT
TATTTTTTTTT---AACCATTAAGTATTTGCC-ATGAAGTTCATCAAAGTA-TTTAAAACTCTGGC
>Felis_catus
AAAGCACATAAAATAGAT-ACTTGTTACCATTATTATTGAGGA-TGCTTAGAAAACCGAGTG------------------
--------------------------------------------------------------------------------
-----------------------------------------------------TTATTGTTGTTT---------------
-ATAGAGAT----CTGATAT---AAAATTTTATTAGTTTTGGGTGT--CATGACACAATGATTCAATATTTGTGTACATT
GAGAAATGATCATCACCA-AAGCCTAATTAAC--CCCCATCACTGTACATAGTTGTACAAATT--GTTTTTTCTTATTAT
GAGAACTTTTAA-GATTTGTTCTCTTAGCAACGTTCAGATATGC-AGTGCAGTATTACTAAGTATAGTCACCATTCTAT-
-GCATTAAATCCCAGTGACTTATTCA------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------TTTT--ATAACTGTAAGTTTGCA
CC-TTTGACCCC---CTTTACCTATT-----TCATCCACTT-----------------------ACCAGTCTGTTC-TCT
GTATCTAAGAGCTTGGTTTGGTTTGGTTTTGTTT-----------------------------------TTGTTCTTTGA
TGTTTTTTTTT---AACTATTAAGTATTTGCC-ATGAAA-TCAT-AAAGTA-TTTAGAACTCTGGC
>Manis_pentadactyla
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCCTAGAAAACCAAACT------------------
--------------------------------------------------------------------------------
---------------------------------------------------TTTTTTTTTTCTTC---------------
-TTTGAGGTACAATTGGCATAT-----------TGGTTTCAGATG---TACAACATAATGGTTTGATATTTGTATACATT
GCAAATTGATCATCACAATACTTGTAGTTACT--GTCTGTCACCTTGCATAATAACAAAAAATATTTTTTTTCTTGTAAT
GAGGACTTTTAA-GATCTACTTTCTTAGCAATTTTCAAATATGC-CATACAATATTATTAACTATAG--ACCCTTCTGT-
-GCATTATATCCCCATGACTTATTTA------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------TTTT--GTAACTGGAGTATCTTA
CCATTTGGTCCT---CTTCACCCATT-----TCTCCTGTTTCCTACCCACTGCCTCTGGCACCTATCAGTATATTC-TCT
GTGCCTACGAGCTTGGGGCGGGGGAGTTGTTTAGGTT--------------------------------TTTTTTTCTTT
TTTTTTTTTTA---AACCATTAAGTATTTACC-ATGAAGTTTATCAAAGTA-TTTAAAACTCTGGC
>Sus_scrofa
AAAACAC--TAAATGAGT-ATTTGTTAACATTA---TTGAAGAATGCTCAGAAAACCAAGTG---CATTGTTGCTGTTGT
TGTTGTTTTGGGGGTATACCCAACCGCATGGGAAAGTTCCCAGGTCAGGGATCAAACCTGTGCCACAGCTGTAACCAGAG
CCACAGCGGTGACAACACTTAACCCTTGGAGCCATGAGCGAAGTCCTTTTTTTTTTTTTTTTTAA---------------
-ATTGAGGTGTAGTTAATATAT-AACATTGTGTTTGTTTCAGATG---TACAACATAATGATCCAATAT-TGCAAACATT
GCAAAAGGATCATCCCAGTAAGTCTACTTAAC--ATCCATCCCCCTACATAGTTACAAAACAG--TTTTTTTCTTGTGAT
GAGAACTCTTAA-GACCTACTCT-TTATCAATTTTCAAATAGGC-AGTACAGTATTATTAACTACAGTCACTCTGCTATT
-ACATTACATCCTCAGAACTTATCTG------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------TCTT--ATAATTGAAAACATGTA
CCCTTTCACCTCC--CTTCATCCATTTC---TCTCCCACCCTCA-CCCCCTGCTTGTGGCAAC-AAAAATCTTTTC-TAT
ATTCCTTGGAGCTTGTTTT--------------------------------------------------TTTGTTTTGTT
TTTTGTTTTTA---AACTAT-AAAGATTTACCTGTGAAGTTCGTCAGAGTA-TTTAAAACTCTGGT
>Tursiops_truncatus
AAAACAC--TAAATAAAT----ATTTAACATTATTATTGAAGAATGCCTAGAAAACCAAATA------------------
--------------------------------------------------------------------------------
-------------------------------------------------TTGCTTTTTTTTTTAA---------------
-ATTGAGGTATAGTTGATATAT----AGCATATTAGTTTCAGGTG---TAAAACATAATGGTCCAATAT-TGTACACATT
GCAAAATGATCACCACAATAAGTCTACTTAAC--ATCCATCCCCTTACATGGTTACAAAACA---GTTTCTTCTTGTGAT
GAGAACTTTTAA-GATCTACTCTTTTAGCAACTTCCAAATATAC-AATACAGTATTATTAACTATAGTCACCCTGCTGTT
AACATTACATCTCCAGAACGTATCTA------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------CCTT--ATAATTGGAAGTTGGTA
CCTTTTGACCCCCTTCTTCATCCATT-----TCTCCCACCCTCA-CCCACTGCTTGCGGCAACGACTAACCTGTTC-TCT
GTATCTATGAGCTTG----------------------------------------------------------TTGTTGT
TGTTTTTTTTA---AACCATCAAGTATTTACC-ATGAAGTTCATCAAAGTA-TTTAAAACTCTGGT
>Equus_caballus
AAATCAA--TCAGTAAAT-ATTTATTAACATTGTTATTGAAGAATACCCGGAAAATCAAGTG------------------
--------------------------------------------------------------------------------
-----------------------------------------------------TTTTT----------------------
--------TATAATTGACATAT-AACGTTATATTAGTTTCAGGTG---CAAAACATAATGATTCCATGTTTGTATACATT
GTGAAATGATCA---CAATAGGTCTAGTTAAC--ATCCGTCACCTTACATAGTTACAAAACTTTCTTTTTTTCTTGTGAT
GAGAACTTCTAA-GATCTACTCTCTTAGAAACTTTCAAGTAGGC-AATACAGTAT---TAACTGTAGTCACCAGGCTGT-
-ACGTTGCATCCCCGTGACTTACTTA------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------TTTT--ATAACTGG--GTTTGTA
CCTTTTGACCCC---CTTTACCCATT-----TCTCCCA-------CCGCCTGCCTCTGGAAACCACCAATCTGTTT-TCT
GTATCTATGAGCTTTA---------------------------------------------------------------T
TTTTTTGTTTT---AACCATTAAGTATTTACC-ATGAAGTTCATCAAAGTA-TTTAAAACTCTGGT
>Ceratotherium_simum
AAATCAA--TCGATAAAT-ATTTGTTAATATTACTATTGAAGAATGCCCAAAAAACCAGGTT------------------
--------------------------------------------------------------------------------
---------------------------------------------------------TTTTTTTT---------------
-ATTGAGGTATAATTGACATAT-AACGTTATATTAGTTTTGGGTG---CAAAACATAATGATTCCATATTTGGATACATG
GTGAAATGATCAC------AAGTCTAGTTAAC--ATCTGTTGCCTTACATAGTTACAAAAATTTCTGTTTTTCTTGGGAT
GAGAACT-TTAA-GATCTACTCTCTTAGCAGCTTTCAAATATGC-AATACAGTAT---TAACTATAGTCATCATGCTGT-
-ACATTACATCCCCATGACTTATTTA------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------TTTT--ATAACTGGAAGTTTGTA
CCTTTTGACCCC---CTTCACCCATT-----TCTCCCA-------CCCCCTGCCTCTAGAAACCAACAATCTGTTC-TGT
GTATCTATGAGCTTTG---------------------------------------------------------TTTTTCT
TGTTTTATTTT---AACCATTAAGTATTTACC-ATGAAGTTCATCAAAGTA-TTTAAAACTCTGGT
>Myotis_myotis
AAAGCAC--TAAACA--------TTTAACATTATTATTGAAGAATGCCTAGAAAAGCAAGTG------------------
--------------------------------------------------------------------------------
-------------------------------------------------------GTATTTTTAA---------------
-ATTGAGCTATAATTGACATAT-AACATTATATTAATTGCAAGTG---TACAAC---ATGATTCGATATCTGTATACATT
ATGAAATGATCATCACAATAAGTCTAGTTAAC--ATC-ATCACATTACA-------AAAAGTT--TTTTTTTCTTGTGAT
GGGAACTTTTAA-GGTGTACTCTC--AGCAACATTCAAATATGTAAATACAGTATTATTAAGTATAGTCACCATACTGT-
-ACATTGCATCACCATGACTTTTTGTTTAATTGAATTTTAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGATTGATTTGTTGTTCTACTTATTTATGCATTCTGACTAGGGATGGAACCTGCAACCTTGGCAT
ATCTGGACTATGCTTTAACCAGCTGAGCTACCCAGCCAGGGCATGACTTGTGTGTTTTTTTAAATAATTAGAAGTTTGTA
CCTTGTGACCCTC--CCCCACACACTCCCATTTTACCACTTCC--CATCCCATCTCTGGCAGCTACCAATCCGTTCTTTT
GTATCTCTGAGTTTG---------------------------------------------------------------TT
GGGTTTTTTTA---AGTCATTAAGTATTTACC-ATAAAGTTCATCAAAGTA-TTAAAAACTCTGGT
>Rhinolophus_ferrumequinum
AAAGCAC--TAAGTAAAT-ATTTGATAACATTATTATTGGAGAATGCCTAGGAAAGCAATTT------------------
--------------------------------------------------------------------------------
------------------------------------------------------TATTTTTTTAA---------------
-ATTGAGGTATAATTGACATAT-AACATTATATTAGTTTCAAGTGTACTACAACGTAACGATTCAATATTTGTGTACATT
GTGAAATGATCA---CAATAAATCTAGTTCAC--ATCTGTCACATTACAGG------TAAAAAAATTTCTTACTCGTGAT
GAGAACGTTTAAAGATCTACTCT---AGCAACTTTCAAATATGC-AATACAGTGTTGTTAATGACAGTCACCATGCTGT-
-ACATTATATTTCCAGGACTTNNNNN------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------NNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNN---------------------------------------------------------------NN
NNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>Condylura_cristata
AAAGCAC--TAAATAATT-ACTTGTTAACGTTATTTTTGAAGAATGCTTTGAA-----CTTA------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------TT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------TACC----ATTATTTACC-ATGAAGTTCATCAAAGTA-TTTAAGACTCTGGT
>Sorex_araneus
AAAGCAC--TTAATTATT-TTTTGTTAACATTATT-TTGAAGAATGCCTAGAAA----TTTA------------------
--------------------------------------------------------------------------------
-----------------------------------------------TTTGTTTTGTTTGTTTGT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------TTCCCTGAAGTATCTGCC-ATGAAGTTCATCTAAGTATTTTAAAACTGCACT
>Homo_sapiens
AAAGCAC---TAATAAAT-ATTTCTTAACATTATAATTGAAGAATGACTGGAAAGCCAAGTG------------------
--------------------------------------------------------------------------------
-------------------------------------GGCTTTGTTTTTTGTTTTCTGTTGTTTT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------TAACATTAAGTATATACC-ATGGAGTTCATCAAACTATTTAAAAGCTCTGGT



Bat133_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------TAAGTTCTGGAGATCTAATGTACAGC-ATGGTGACTATAGTTAATAAT---ACTGTATTGT
A-TACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTC-TCACCACACACA---AAAAAATGGTAACTATGTGAGGTG
ATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAA
ATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA-------------------------------
--------------------------------------------------------
>Canis_familiaris
ATTTTATTTTTC----------------TTGTACATAAATTTTGAACATT---AA-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------AAGTTCTTTA-----------------GTAAAGTGCAGC-ACAGTGACTATAGTTAATAAC---ACTGTATTGC
A-TGCTTAAAAGCTGCTAAGAGAGTAGATCTTTAAAGATTGTTATGAGGAGAA---AAAAAGT--TAACTATGT--GGTG
ATAA--ATGTTAATTAGACTTATTGTGATGATCATTTTGCAGTATATACAAATATTGAATCATTATGTTGGACACCTGAA
GCTAATGTAATGTTATTATGTCAGCTCTATCTCA------------------AAGAATTCTCTG---CTTTTTATAAATA
CATAATAATTTAGGGGAA--------------------TAAGCCAAGATCAAGAAA
>Felis_catus
ATTTCATTTTTCTTAAAGTTATAGAGATTTGTCxCATAAACTTA-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----CAAGTTCTTGC------------------TGATGTACAGC-ATGGTGACTACAGTTAATAAT---ACTGTATTGC
A-TATTTGAAAGTTGCTAAGAGCATAGAT----AGAGTTTGTTATCAGGATAA---AAAAATTTATAACTATGT--TGTG
ATAA--ATGTTAACCAGACTTATTGTGGTTATCATTTCATAATATATATAAATATTGAATTATTATATTGTACCCCTGAA
GCTAACATAATGTTTATAAGTCAGCTATATCTCAGAA---------------TAAAGTTCTTTG---CTTTGTATAAATA
CA---TAATTTAGGAGAA--------------------TAAGCCAAGATCAAGAAA
>Manis_pentadactyla
ATTTGATATTTCTTAAGGTTATAGAGAATTATCCATAAACTCTGTACATT---AA-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------AAGGGCTTTT-----------------ATAATGCACTGC-ATGGTAACTGCA-TTAATAAT---ACTGTATTGC
A-TATCTGAATGTTGCTAAGAGAATAGATCCTAAAAGTTT-TCATCGGAAGAAA--AATGTTTTCTAACTATATATGGTG
ATGG--ATGTTAACTAGACTTATTGTGGTGATCATTTTGCAACATATATAAATATCAAATAATTATGTTGTACAACTGAA
ACTAATGT----TTTATGT-CCAGTTATATATTTTT----------------TAAAGTTCTTTG---CTTCGCATAAATA
CATAATAATTTAGAAGAA--------------------TAAGCCAAGATTGAGATA
>Sus_scrofa
ATTTTATTTTTCTTTAGATTATAGATAATTGCCCATAAACTTTGTACATT---AAAAGTTCTTTAGGAGTTCCTGTCGTG
GCTCAGTGGTTAACAAATCCAACTAGGAACCATGAGGTTGCAGGTTTGAACCCTGGCCTTGCTCAGTGGGTTAAGGATCC
AGTTTTGCCGTGACCTGTGGTGTAGTTTGCAGACACAGCTCAGATCCTGCATTGCTGTGGCTCTGGCATAGGCTGGTGGC
AACAGCTCCGATTAGACCCCTAGCCTGGGAACCTCAATATGCCACAGGAGGGGCCCTATAAAAGGAAAAAAGACCAAAAA
AAAAAAAAGTTATTTG-----------------GCAATGTATAGC-ATAGTGACTAGATTTAATAAT---ATTGTATTGC
ATTATTTGAAAATTGCTGAGAGAGTATATTTTAAAAGTTC-TCACCACAAGAA---AAA-------AAATGCGTGTGGTG
ATGG--ACATTAACTAGATTTACTGAGGTGTTCGTTTCATTATGTAAACAAATACTGAATCATTATGTTGTACACCTGAA
CCTAATATATTGTT-ATATGCTAATTATACCTCAATTTTTTAAAA-------AAAAGTTCCTTG---CTTTGGGTAAATA
CATAATAATTCAGGAGAA--------------------AAAGCCAAGACTGAGAAA
>Bos_taurus
ATTTCATTTTT---AAGATTATAGAGGATTATCCATAAACTTTGTACATT---AA-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------AAGTTCTTGG-----------------GTGATATGCATC-ATGGTGACTATAGTTAATAGT---ATTATATTAC
A-TATATGAAAATTGCTAAGA--TTATATTTTAAAAGTTC-TCATCACAAGAA---AAAAATGTATAACTATGTATGCAG
ATAG--TCATTAGTTAGATTTATTGTGATGCTCATTTTACTATATAAACAAATATTGAATTAGTATATTGTACACCTGAA
-CTATCATATTGCT-ATATGCTAATTATACCTCATTTTT-------------TAAAGTCCTTTG---ATTTGTGTAAATA
CATAACATTTCAGGAGAC--------------------TAATCCAAGACTAAGAAA
>Equus_caballus
ATTTCATTTTTGTTAAGCTTATAGAGAATTGTCCATAAACTTTGTACATT---AA-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----GAAGTTCTTTG-----------------GTAATCTAGGGC-ATGGTGACTACAAGTAATAAT---CCTGTAATGC
A-TATTTAAAAGTTGCTAAGAAAGTAGATCTTAAAAGCTC-TCATCACAAGAAAAGAAAATTTTGTAACTATGTATGTT-
-TGG--ATGTTAACTAGACTTACTTTGGTGCTCATTTCACAGTATATACAAATATCAAATCATTAGGTTGTACACCTGAA
ACTAATATAATGTT-AAATGTCAATAGTACCTCAATAAAAA-----------GAAAATCCTTTG---CTTTGGGTAGACA
CATATTAATTTAGGAGGA--------------------TAAGCCAAGATTGAGAAA
>Tapirus_indicus
ATTTCTTTTTTGTTAAGGTTGTAGAGACTTGCCTATAAACTTTGTACGTT---AA-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AAAGTTCTTTG-----------------CTAATATACAGCAATGGTGACTACAAGTAATAAT---ACTGTAATGC
A-TACTCAAAAGTTGTTAAGAAAGTGGATTGTAAAAGCTT-TCATCACAAGCAAA-AAGTGTTTGTAACTATGTATGTT-
-TGG--ATGTTAACTAGACTTACTGTGGTGATCATGTCACAATATATACAAATATCAAATCATTTTGTCATATACCTGAA
ACTAATATAATGCT-ATATGCCAACTATACCTCAATAAA-------------AAAAGTCCTTTG---CTTTGGATAAATA
CATATTAATTTAGGAGAA--------------------TAAGCCAAGACTGAGAAA
>Myotis_myotis
ATTTTATTTTTCTTAAGGTAATAGAGAATTGACCATAAGCTTTATACATT---AAACGTTATTT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------GGTAAGAAAAGAATAA
AGAAAAAAGTGATTTG-----------------GTAATGTACAGC-ATGGTGACTACAGTTGATAAT---ACTGTAGTGT
C-TATTTGAAAGTTGCTAA----CTAGATCTTAAAATTT-------ATAAGAA---AAAGTTATAAAAC----TATGGTG
ATGG--ATGTTAAC-----GTATTGTGGTGATCATTTCACAATATATACAAATATCAAAATATTAGGCTGTGCACCTGAA
ACTAATATAATGTT-ATATGTCAATTACACCTAAATTTTTA-----------AAAAGTTATTTG---CTTTGGGTAAATA
CATAGTAATTTAGGAGAA--------------------TAAGCCAAAATTGAGAAA
>Rousettus_aegyptiacus
ATTTCATTTTTCTTAAAATTATAGAGCGTTGTCCATAAACTTTGTACATT---AA-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------ACGTTCTTTG-----------------GTAAAGTACAGC-ATGGCGACTACAGTTAATAATAACACGGTGTGAC
A-TATTTGAAATTTGCTAAGAAAGTAAATCTTAAAAGTTC-TCATTACAAGAA---AAA---TTATATCTATGTATAGTG
ATGG--------------------------ATCATTTCACAATATATAAAAATATTGA---ATTATGTCATACG-CGGAA
ACTAATATAATGTT---ATGTCAGTTATACCTCAATCTTTAA----------AAAAGTTCTTCG---CTTCG-GTAAATA
CATAAAAATTTAGGAGAA--------------------TGAGTCAAAATTGAGAAA
>Condylura_cristata
ATTCCACTTTTCTTAAGGTAGTAGAGGATTGCCTGCAAATTTTGTGTATA------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------AATCATTCTCGG---TGGTGCGTGAATA
AATGATATCTTTTAAGAA--------------------TAAGACAAAACTGAAAAA
>Sorex_araneus
ATTTCATTTTTCTTACTGTTATAGAGAATTGTCTATAAACTTTGTTCGTT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------AAAAGTGCTTTA---CTTTGAACAGTTA
TGTAAGAATTTAGGATGC--------------------CAACACAAGATTGAGAAA
>Homo_sapiens
ATTTCATTTTCCTTAAAGTTATAGAGAATAGCCCATAAACTCTGTGCATT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------AAAAGTTCTTTG---CTTGGGGCAAATA
CATAATAATTTAGAAGAATAAGCTTGGAATGCATCAGCTAAGCCAAGAATGAGAAA



Bat137_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------TTTTTCCAGCTTTATT
GAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATA-TACGTATA----------
-------------------------------------------CATTGTGAAATGATTACCACAATCAAGCTAATTAACA
TATCCATCACCTCACATAGTTACCAT------------------------------------------------------
------------------TTTTT--TGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAAATTTCAAGTATACAA
TACAGTATTATTAACTATAGTCACCATGCTGTACATTAGATCTCCAGAACTTATTCATCCTGCATAACTGAAACTTTGTA
CCCTTTGACCAACATCTCCCCATTTCCCCCACCCCCC-------------------------------------------
--------------------------------
>Canis_familiaris
TGGTTACCATATG-TG----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--AAGGAATTTCGG------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------TTTTCTATTTATAAATATATGTCTC-AAAA---TTTCTT---TTTTTCC----------AGTTTCATT
GAGATA----------------------------TAAAGTATACAGAACAATGATTTGACTAAACATAAA----------
---------------------------------------------TTGAGAAATGATTGCCATGATA-----AGTTAAC-
-ATCTATCATCTCATAGAGATACAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGGAAA
AAAGAAAAAAAAATGTGGTTATT--CCCTTGTGATAAGAACTCGTAGGCTCTACTCTCTCAACGACTTTCAAATGTGCCA
CTCAGCAGAGTTCATTATAGTCACCATGCTGTACATCACATCCCCAGGACTCACTGA-----TCTCACTGGAACTCTGTA
CCTTTTAACTACTTTCATCTAA-----------------TTCTCTTTTTATTCC---TTTCTCTAATTTTC-CAACAATC
TTAGACGGTGAACCAACCACAGCCTTTGAGGA
>Felis_catus
TTGTTGCCATGTGCCT----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--GAAGAAGTCTGATTTTCCAATTATTTTAAATGTTTTTTTTTTTTCAACGTTTATTTATTTTTGGGACAGAGAGAGACA
GAGCATGAACGGGGGAGAGGCAGAGAGAGAGGGAGACACAGAATCGGAAACAGGCTCCAGGCTCTGAGCCATCAGCCCAG
AGCCTGACGCGGGGCTCGAACTCCCGGACCGCGAGATCGTGACCTGGCTGAAGTCGGACGCTCAACCGACTGCGCCACCC
AGGCGCCCCTGATTTTCCAATTATAAGTAAACACTTG-AAAA---CTTCTTTCTTTTTTGC----------AGTTTCATT
GAGATACAATTGGCAAAC-AGCACTGT-TAAGTTTAAGATACACAGGACAATGATTTGACT-GACACAGA----------
---------------------------------------------TTGTGAAATGATTACCAT-ATAAGTTTAGTTAAC-
-ATCTGTCCTCTCATACAGATGCAGG-------------------------------------AAAAAAAGGAAAGGAAA
AAGCAAAAAATA----TGTTTTT--TCCTTGCGCTAAGAACCCTTGAGATCTACTCTCTTTGCAACGTTCAGATACGCCA
CACAGCAGAGCTAATTATAGTCATCATG-TGCACATCACATCCCTGGGACTTACCT------TCTAACTGGAAGTTTGTA
CCTTTTAACCACTTGTGTCCAA-----------------TTCTCCTTTGATTCC---TTTCTTTAATTTTT-CAACAGTC
ATAAACGGGG----AGCCACACCCACTCAGGA
>Manis_pentadactyla
TTGTTACCATGTCCCT----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--GAGGAATTTTGA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------TTTTCTACTTATGAATAAATATCTC--AAA---TCTCTA---TTTTTGC----------AGATTTATT
GAGATAAAATTGACAGAG-AGCACTGTGTAAGTTTAAGGTCTCCAACATAATGATTTGGCT-TATGTATA----------
---------------------------------------------TTGTAAAAAGATTACCAAAGTAAATTTAGTTAAT-
-ATCCATCATATTGTATAGGTATAAA-----------------------------------------------AAAGGAA
AGAGAAAAAATG----TGTTTTCTTTCTTTGTGATGAGAACCCTTAAAATCTATT--------AACTTTC--ATATACCA
CACAGCAATGCTAACTATAA-CATCATCTTGCACATTACCTCCCTTGAACTTACGTATCT--TATAACCAGAAGCTTGTA
ACTTTTGGCCTCCTTTGTCTAA-----------------TTTTTTTTCTATTCC---CTTCTTTAATTTTC-TAAAAGTC
TTAAACTTTG----AACCACAACTATTCATGA
>Sus_scrofa
TTGTTACTGTTTGCCTAAAGAATTTTGATTTTCCTGTGGTTGCCAAGGAGGAGGGGAAGGGAGTGGGATTCATTGGGAGC
TTGGGGTTAATAGAAAACTATTGCCTTTGGAAAGGATAAGCAATGAGATCCTGCTGTATAGCACTGGGAACTATACCTAG
TCACTTACCATGGAGCATGATAATGTGAGAAAAAGAATGTATATGTGTATGTGTGACTGGGTCACCTTGCTGTACAACAG
AAAATTGACAGAACATTGTAAACCAGCTATGATGGAAAAAATAGAAATCACTAAAAAGATAAATAAAAAACACTGAAAAA
AAAAAGAATTTTGA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------TTTTCCATTTGTGAGTAAATACCTT-AAAT---CTCTTTT--TTTCCCC----------AGGGTTATT
GAGATATAGTTGACATAT-AGCATTGTGTAAGTTT--------------AATGAATTGACT-TACAAATA----------
---------------------------------------------TTGAGAAACGACTACCACAATAAGTTTAGTTAAC-
-AGCCATCATCTCGAATAGATACCAAC--------------------------CACTCCCCCC-----------------
-----AAAAAAG----CGTTTAT--TCATTGTGATGAGAACCCTTAGAATTTACTCTC-----AACTTTCAAATATACTG
TACAGCAGTGC-AACAATAGTCTTCATGTTGTA-ATTACATGTCTAGTCCTTATTTATAT--TATAACTGCAAGTTTGTA
CCTTTTGACTACCTTCATCAAA-----------------TTC---------------TTCCTTCAATTTTC-TAAACATC
TTAAACTGTG----AACCAGAACCATTCACAA
>Bos_taurus
TTGTTATCACATGGCT----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--GAAGAACTTTGA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------TTTTCCATGTATGAATAAATAACTT-AAAA---TTTTCTT--TTCCCCC----------AGTTTTATT
CAGATATAGTTAACATAC-AGCAC----TAAGTTT---------TTTAAAAAAAATTTACT-TACAAATA----------
---------------------------------------------TTGTGAAATGATTAACACAATAAGTTTAGTTAAC-
-ATCCATTATCTCATGTAGATATCCC------------------------------------------------------
---TCAAAGAAG----CTTTTTT--CCCTTGTGATGAGAACTCCTAGGATTTACTTTCTGGACAACTTTCAAATATAACA
TACGGCAGTGC-AACTACAGTCTTCATGTTGTA-ACTATATTTCTAGTACTTATT-------TATAACT-----------
--TTTTGACTACCTTTATCCAA-----------------TTCTCTTTTTATTCC---TTTCTTTAATTTTC-TAAATGTC
TAAAACTGTG----AATCACAACTATTTATGA
>Equus_caballus
TTGCTACCACGTGCCT----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--GAAGAA------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------TTTCCGTTTATGAATAAATACCTT-AAAA---TCTCTT---TTTTCCC----------AGTTTTATG
GAGATATAATTGACACAC-ACTGCTG--CAAGTTTAAGGCGTGCGGCATAATGACTTGCCT-TACACACA----------
---------------------------------------------CTGTAAAATGGTTACCACGAAAGGTTTAGCTGAC-
-ATCCGTCATCTCACATAGATACGAA-----------------------------------------------AAGAGAA
AAGGAGAAAAAG----GTTTTTC--TCTTTGTGAGGAGAGCTGTTAGGATCTGCTCTCTCAACAACTTTCCCATTTACTA
TAGCTCAGTGTTAAC--TAGTCATCATGCTGGGCATCACATCCCCAGTACTAATTTATCC--CGTAACTGGAAGTTTGTA
CCTTTCAGCAACCTTCATCCAT-----------------TTCTCTTTGTATTCC---TTTTTTAAATTTTC-TGAAAGTC
TTAAACTGTG----GGCCACTACCATGCATGG
>Ceratotherium_simum
TTGCTACCAAGTGCCT----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--GAAGAA------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------TTTCCATTTATGAATAAATACCTC-AAAA---TCTCT----TTTTTCA----------AGTTTTATG
AAGATGTAATTGGCATAC-AGCACTG--TAAGTTTAAGGTGTACGGTGTAACGACTTGACT-TACAGATA----------
---------------------------------------------CTGTGAAATGATTACCACAATAGATTTAGTTGCC-
-ATCCATCATCTCATATAGATACAAA-----------------------------------------------AAAAGAC
AAAGAAAAAAAA----AATTTTC--TCCTTGTGATGAGAACTCTTAGGATCTGCTGTCTTAACAACTTTCCTGTGGATCA
TACAGTAGTGTTAA-TGTAGTCCTCATGCTGTACATCACATCCCCAGTACTAACTCATCT--CATAACTGGAAGTTTGTA
CCTTTTGACCTCTTTCATCCAC-----------------TTCTCTTTTTATTCC---TTTTTTTAATTTTG-TAAAAGTC
TTAAACTGTG----AACTACAACTATGCATGG
>Myotis_myotis
TTGTTACCATGTGCCT----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--GAAGAGTTTTGA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------TTTTCCATTTATGAATAAATACCTGAAAAA---TCTCTTTTTTTTTTCT----------GGGTTTCTT
AAGCTATAATGGACATAT-AGCACTGTGTAAGTTTAAGGTGTAAGGCATAATAATTTGACT-TACATATA----------
---------------------------------------------CTGTGAAATGATTACCAAAATAAATTTAGTTAAC-
-ATTTATCACATCCTATAGATACAAA---------------------------------------------------GAA
AAGAAAAAGAAT----TTGTTTTCCTCCTTGTAATGAGTACTCTTA-GATTTACT--CTTAACAACTTTCAAATATGTCA
CACAGCAGTGTTAAATATAGCCATCATGTTGTACATTACATCCCCATGACT-----------TATAACCAGAAATTTGTA
TCTTTTGACCACCTTCATCGTA-----------------TTCTCTTTGTGTTCC---CTCCTTTACCTTTC-TGACACTC
ATAAACTGTG----AACCACAGCTATTCATGA
>Rousettus_aegyptiacus
TTGTTACCATGTGCCT----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--GAAGAATTTTGA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------TTTTCCATGTGTAAATAAATACCTT-TAAA---TCTCTT---TTTT-CC----------AGTTTTCCT
GAACTGTAATGGACATAC-AGCACTGTTTAAGTTTAAGATACACAGCATAATGATTTGACT-TACATATATTAAGGCAAA
AGATTTATACAATCCAAAGAAAAACCAGAGCATGACTTACATATTTTGTGAAGTGATTACCAAAATAAATTTAGTTAAC-
-ATTTATCATGTCATATAGATATAAA----------------------------------------------AAAAAGAA
AAAGAAAAAAAA----TATTTTT--TCCTTGAAATGAGAACTTTTAAGATCTGCCCTCTTAATGTCTTTCAAATATAGCT
CACGGCAGTGTTAACGACAGCCACCACATTATACATTACATCCCT-GCACTTATTTGTCT--TATAACCGGATGTTTGTG
CCTTTTGACCATCTTCATCTAA-----------------TTCTCTTTGTATTCC---CTCCTTTAATTCTC-TAAAAATC
TTAAACTGTG----AACCACATCGAGTCATGA
>Condylura_cristata
CTGTTACATTGTACCT----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--GAAGAATGTGAA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------TATTTCATTTATGAACAGTTATCTT-AAAA---TTGCCT---TTATGTC-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------TGTCTTCAATTTTC-TAAAACTC
TTCAAATGGG----AATCAAGG---TTCCTGG
>Erinaceus_europaeus
TTGTTAC-ATGTGCTT----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--AAATAATTTGAAT-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------TTTTCCATTTATAAAAAAATACTTT-AAAA---CACCTTT--TTGTACC-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------TATCTTTAATTTTCTTAAAACTC
TTAAAATGT-----AACCACAACTATTCATAA
>Homo_sapiens
CTGTTGGCACGTGCCT----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--GAAGAATTTTGA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------TTTTGCATTTTTGAATAAATGGCTT-AACA---TCCCTTT--TTATTCC-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------TATCTTTAACTTTC-TAACAATC
TTAAACTGTG--------ACCACTATTCATGA



Bat141_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------AAAATGGTA
ACTATGTGAGGTGATGGATATGTTAAT---TAGCTTGATTGTGGTAATCATTTCACAATGTATAC---------------
-GTATATCAAAACA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------TCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA
--------------------------------------------------------------------------------
---------
>Canis_familiaris
TGT------CTTTTTTAATGATAATAACTTTC------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TTAAAATCTTGGAAAGCATGGCTT----TAA---AAAA-----ACAAGTT------------
------GGCAGTGACAGATGT--TACC---TAGACTTTCTG-GGTGATCCTTTCATAATATATAC---------------
-AAATACTGAATCA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------TTATGTTGTACATCTGAAACTAATACAA-TACTATAAGTC---TGTATCTCA-ATTTTTTTAAAAGG
---GGGGAGGTT---AG----GTAAATCCTCAAGCAAATGTCCCTGTGCTTCTGGCGCAGCT--GAGTCTCATCCCC--T
AGAACCATC
>Felis_catus
CGTAT-----TTTTCTAATTAGAATAACTTGCCTGTTTTTAATGTATATTTTGAGAGAGAGAGAAAGAGAGAGAGAGAGA
GACAGTGCAAGTTGGGGAGGGGCAGAGAGGGAAAGAGAGAATCCCAAGCAGGCTCCACATTTTCAGTGCAGAGCCTGATG
TGGGGCTCGATCCCACGAACCCTGAGATCATGACCTGAACTGAGATCAAGAGTCAGACGCTTAACCGACTGAGCCACCCA
GGGGCCCTGAGAATAACTTTAATATCTTAGAAAGCTTGGCTT----AAA---AAAA----AAAATGTT------------
------AGCAGTGA------------C---TAGACTTTGTG-AGTCATCGCTTTGCAATATATAC---------------
-AAATATCCAATCATGGGGCGCCTGGGTGGCTCAGTCGGTTGGGCGTCCGACTTCGGCTCAGGTCATGATCTCGCGGTCC
GTGAGTTCGAGCCCCGCATCGGGCTCTGTGCTGCCAGCTCAGAGCCCGGAGCCTGCTTCGGATTCTGTGTCTCCCTCTCT
TTCTGCCCCTCCCCTGCTCATGTTCTGTCTCTCTCTGTCTCAAAAATAAATAAAAACATTAAAAAAATTAAAAACAAAAC
AAATATCCAATCGTTACGTTGTACACCTGAAACTAAGACGA-TGTGATATGTC---TGTATCTCA-ATTAAAAACAAGAG
---AAAAAAGTT---GG----GTAAATCCTCCAGCAAATGTCCACGTACTTCCAGCACAGCT----GTCTCATCCCC-TT
AGAACCATC
>Manis_pentadactyla
TGTACTTA-CTTTTCTCACGGGAATAGCATTC------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TTAAAATCCTGGAA-GCATGACTT----TAA---AAAA-----------A------------
------GTTGGTGTTAGATGT--TAAC---TAGACTTGGGGTGGTGAATATATACATATATATACTCGAATATATATTCG
AATATATCGAATCA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------CTATGTTTTATAACTGAAAGTAATGTAA-TGTTATGTATCAATAATACCCCA-AT------------
---AAAAAAAAT---GG----ATAAATCTTCAAGTAACTGGCCATTTACC-CTGGCTCAGCT--------CATCTCCATT
AGAACCATC
>Sus_scrofa
TGTCTTCGGCTT------------TAACTTTC------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TTAAAATCTTGGAAAGCGTGGCTT----GAA---AAAA---------CTT------------
------GGCAGGGACAGGTGG--TAACAGGTAGAATTACGGTGGTAATCATTTTTCAATAGAGGC---------------
-GGATACTGAATCA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------TTCTGCCGAACACCTGAAACATACGCAA-TGTTATATGTCAATCACATCTCACGTTTTGTTTTGTTT
---GGTTAAGTT---GG----GTAAATCCTCAAGCAAATGCCCACTCACCTCTGGCCCAGGTCTGAGTCTCATTCCTTTT
AGAATCATC
>Tursiops_truncatus
TGTATTTGACTTTCCCAATGGGAATAACTTTC------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TTAAAATCTTGGAAAGCGTGGCTT----AAA---AATG----------GT------------
------GGCTCTGATGGGTAT--TAAC---TAGACTTATTGTGGTGATCTTTTTGCAGTATATGC---------------
-AAATATCGAATCT------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------TTATGTCGTACACCTAAAACTAATGCAA-TATTATATGTCAATTATATCTCA-ATTTTATTTTT---
---AAG----TT---GG----GTAAACCCTCAAGCAAATGTCCATTCACAACTGGCTCAGCTCTGAGTCTCATTCCCTTT
AGAACAATC
>Equus_caballus
TGTATCTGGCTATTCTAATGGAAATAACTTTC------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TTAAAATCTTGGAAACCAAAGTTT----AAA---AAAA-------AAGTT------------
------GTTGGTGAAGGATGT--TATC---TAGACTT---GTTGAGATCATTTCACAACATACAC---------------
-AAATATC-AATCA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------TTATGTTGCACACCTAAAACTAATATAA-CGTTA---------TATATCTCA-AAAGA---------
---AGAAAAGTT---GA----GTAAATCCCCAAGTGAATGTCCATTTACCTCTGGCTCAGCCCTGAGTCTGATCAGCTTT
AGAACCCTC
>Ceratotherium_simum
TGTATCTGGCTTTTCCAATGGAAATAGCTTTC------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TTAAAATCTTGGAAAGCATAGGTT----AAA---AAAA--------AGTT------------
------GGTGGTGAAGGATGT--TAAC---TAAAGTT------GTGATTATTTCACAATATATAC---------------
-GAATATCAAATCA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------TTATGTTGTACACCTAAAACTAATATAA--------TGTCAATTATATCTCA-ATTAAAA-------
---AAAAATGTT---GA----ATAAATCCCCAAGTAAATGTCCATTTACATCCGGCTCAGCTCTGAGTTTCGTCCCCTTT
ACAGCCATC
>Myotis_myotis
TGTATTTGGCTCTTCTAATGAAAATAACTTTC------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TTAAAATCTTGGAAGGCACGGCTT----AAA---AACA---------CTT------------
------GGCAGTAATGGATGTGACCAC---TGTGTATATTGTGGTAATAATTTCACAGTATACAC---------------
-AGTTATCAGATCA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------TTATGTTGTACACCTGAAACTAATATAA------TATGTCAATTACTTATCT-TTTT----------
---AAG----TT---GG----GTAAGTACTCAAGTAAATGTCTATTTACCTCTGGCTCAGCTGTGAGCCTCATCCCCTTT
AAAACCATC
>Rousettus_aegyptiacus
TATATTTGGCTCTTCTAATGGGAATAACTTCC------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TTAAAATCTTGGAA-GCGTGACTT----AAG---AAAA---------GTT------------
------GGCAGCAGGGAATGT--TGAC---TAGACTTCTTGTGGTGGTCATTTCACAACATGTAC---------------
-AAACATCAAGTCA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------TTATGTCATAGACCTACAACCAACATAA-TGTTATACGTCGATTATATCTCA-ATTTTTTTT-----
---TAAAGAATT---GG----GTAGGTCCTCAAGGAAATATCTGTTTACCTCTGACTCG---------------------
----CCATC
>Condylura_cristata
CATACTTGGATTTT----------TAACT--C------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TTAAAATTTTAGAAAGTGTGGTATACAAAAA---AATCACTGAAA---TT------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------ACCACTACAGTTCTTCAAGTTCACGTCCATTTACCTCTGGTTCAGCTCTAAATCTCATC------
----CCATT
>Uropsilus_gracilis
TGTACTTGGATTTTTAAAAGG-AATAACTTTC------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TTAAAATTTTGGAAATCATGATATACCAAAA---AGT-GTTGAAC---TT------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------ACCAACACAATTCTTCAAGTAAATGTTTATTCATCTCTGGTTTAGCTCTGAATCTCATC------
----CAGTC
>Homo_sapiens
TATATTTGGCTTTTCTAATGGGAATGACTTTC------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TTAAAGTCTTGGAAAGCATGGTTTCAAAAAA---AAAAAAAGTCAGACTT------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------ACTGCCACTGTTCTTCAAGTAAACCTCCATTCACC-CCAGCTCAGCTGTGAGTC---TCTCCTTT
AGGACTGTC



Bat143_LINE

>L1MA9_3END
------------------------------------------------------------------------TTTTTCCA
GCTTTATTGAGGTATAATTGACAAATAAA----AATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATATACGTAT
ACATTGTGAAATGATTA-CCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTACCA------TTTTTTTGTG
TGT--GGTGAGAACACTTAAGATCTACTCTCTTAGCAAATTTCAAGTATACAATACAGTATTATTAACTATAGTCACCAT
GCTGTACATTAGATCTCCAGAACTT-ATTCATCCTGCATAACTGAAACTTTGTACCCTTTGACCAA--------------
------------------------------------------------------------
>Canis_familiaris
CACCCTGAATTAGTCAGACATTCTCTCTCAGCACATGACTTCTACCATAT---ATGCATCCATTGATAT-------ATTT
TTTTAATTGAGATAGAATTGACATATAAC-----ACTGTATTCATTTCAGGTGTACAATTTAATGTTTCAATGTTTGTAT
ATATTGTGAAATGATCA---------TGTCTCATTAAC--TTCTATCACTATACATGGTTACGATT--TTTTTCTCTTTT
TGT--GTTGAGAACTTAGAAGAT-TAGCGTCGTAGCAATTTTCAAATATACGTTACAATATTCTTAACTGCAGTCACTAT
GCTATACATTACATCCCTGGGACTT-GTTTATTTT--ATATCTGGAAGTTTG-----------------ATGCATCCATC
TATTT---ATTGGATTCATATTCACTGGGTCCTAACTATCTTTT--GCTTAGGCTCATCA
>Felis_catus
CACCCTGAAGTAGTCA-ACATTCTCTCTCAGTGCAGGACTTCTCCCGTGT---ATGCACCCATTGATGT-------ATTT
-TTTAATTGGCTTATAATTGACATAGAAC-----TCTGTATCAGTGTCAGGTGTACAACATCATGATTTAGTATTTGTCT
ATATTGTGAAATGATAA---------TGTCTCATTAAT--ATCTATCACAATACATGGTTACAATT--TTCTTTCTCTTT
TGT--GTTGAGAACTTATAAGATCTAGTCTCTTGGCAA-TTTCAAATATACATTACAGTTTTATTAACTATAGTCATTAT
GCTGTACATTACACTCCCAGGACTT-ATTTATTTT--ATAACTGGAAGTTTG------------------TGCATCAATA
TATTT---ATTGGTTTCATATTCATTTGGTTGTAACTATCTTTG--GCTTACGCTTCTCC
>Manis_pentadactyla
CACCCTGAAGCAGTCA-ACATTCTCTCTCAAAACATGACTTCCTCCATGC---ATCAATCCACTTATTT-------ACTC
CTTTAAATGAGATGTAATTGACATATAAC-----ATTATGTTAATTTCACATGTGTAATATAATGATTTGATATTTGTGT
AT-CTGCAAGACAATCA-CCACAATAAGCATAGTTAAC--ATTTGTCACCATAC--GGTTACTATT--TTTTTCTCTTTT
TGT-----GAGAACTCATCCCATCTACTCTTTTAGCAACTTTCAAATAGAAAGTACAGTATAATTAACTATAGTCACCAT
GCTGTGCATTACATCCCCAAGACTT-ATTAATTTT--ATAACTGGAAGTTTG-----------------GGGCATCCATT
AATTT---AATGGTTTCATATTCACCTGG----GCCTGTCTTTT--GCCTTGGCTTGTCA
>Sus_scrofa
TACTCCAAATTAGTTA-GCCTTCTCTCTCAAAGCCTGGTTTCCTCCATGG---ATGCACTCAATTATTT-------GTTT
GTTTTATTGAGATACCACTGAGCAATAAC-----AGTATATTAGTTTCAGGGATATGACATGATGACTCA-TGTTTCTAG
ATGTTGCAAAGTGATCA----CAGTAAGTCTAGTTAAC--ATCCCTCATCATACATAGTTACAAAATGTTTTTTTCTCTT
TCTTTGATGAGAGCTTCAAATATCTACTCTC--AGAAACTTTCCCATATACAATATCGTATTATTAACTGTAGTCATCAT
GCTGCACATTAGGTCCCCAGGATTT-ATTTATTTT--ATAACTGGAAGTTTG-----------------CTGCACCCATT
TGTTT---ATGGGCTTCCTGTTCATTAGG----GCCTATCCTTT--GCTTCACCTTGGCA
>Tursiops_truncatus
----------TAGTCA-ACATTCTCTCTCAAAGCACGGTTTCCTCCATGG---ATGCATTCACTTATTT-------ATTT
ATTTTATTGAGATATAATTGACCTATAAC-----ATTATATTAGTTTCAGGTACACAACATAATGATTCA-TATTTCTAT
ATATTGCAAAATGATCA-CAACTATAAGTCTAGTTAAC--GTCCATCATCGTACATAGTTACAATT--GTTTTCTCTTTT
TGT--GATGA--ACCTTAAAGATCTACTCTCTTAGCGACTTTCAGTTATACAATACAGTGTTATTAACTATAGTCATCAT
GCTGTACCTTATGTCCCCAGGACTTAATTTATTTT--ATAACTGGAAGTTGG-----------------GTGTATCCATT
TGTTT---ATTGGCTTCATATTCCTTTGGGTCTGACTATCTCTT--GCTTTGCCTTGGTG
>Equus_caballus
CACCCTGAATTAGTCA-ACATTCTCTCTCAAAGCATGACTTCTTCCATGT---ATGCATCCATTTATTT-------ATTT
-TTTTACTGAGATATAATTGACATATAACATACAATTATGTTAGTTTCAGGTATGCAATATAATGATTCAGTATTTGTAT
ATATTGTGAAATGGCCT-CCACAATGGGTCTAGTTAAC--ATCTGTCACCATACGTACTTAAAAAA---TTGTGTGTGTG
TGT--GATGAGAACTTTTGAGATCTACTCTCTTAACAACTTTCCAATATACAATATAGTATTATTAACTATAGTCACCAT
AATGTACCTTACATCCCCAGGACTT-ATTTATTTT--GTAACTAGGAGTTCG-----------------ATGCATCCATT
TATCT---ATTGGTTTCATAGTCAT-------TGACTAGCTTTT--GCTCTGTCTTGTCA
>Ceratotherium_simum
CACCCTGAATTAGTCA-ACATTCTCTCTCAAAGCATGACTTCTTCCATGT---ATGCATCTATTTGTTT-----------
--TTTATTGAGATATAATTGACATGTAACATATAATTATGTTAGTTTCAGGTATACAACATAATGATTCAATATTTGTGT
ATATGGCAAAACGATCA----CAATAAGTCTAGTTAAC--ATCCATCACCACACATAGTTACAAAA---TTGTGTGTGTG
TGT--GATGAGAACTTTTAAGATCTACTCTTTTAGCCACTTTCCAATATACAATACAGTATTATTAACTATAGTCACCAT
GCTATACGTTACATCCCCAGGACTT-ATTTATTTT--GTAACTGGAAGTTTG-----------------ATGCATCCATT
TATTT---ATTGGTTTCATATTCATT-------GACTAGCTTGT--GCTTTGTCTTGTCA
>Myotis_myotis
CACCCTGACTTAGTCA-ACATTTCCTCTCCAAGTATGACTCCCTCTATTC---ATTCAT-------TTT-----------
-TTAAATTGAGATATAATTGACATATAAC-----ATTATATTAGTTTCAGGTGTACAACATAATGTTTCAATATTTGTAT
ATATTACAAAATGATCACCCATAATGAGTCTAATTAAC--CTCCATCACCACATATAGTGACGAAA---TTCTGTGTGTG
TGTAAGATGAGGACTTTTAAGATCTAATCTCTTAGCAACTTTCAAATGTACAATACAGTAAAGTTAACTACAGTTACTAC
GCTTTACATTTATCCTCCAGGAC---ATGTATTTA--ATGACTGGAAGTTCA-----------------ATTCATCCATT
TATTT---GTTGGTTTTGTATTCACTTGG----GCCTGTCTTTT--GCTTTGGCTTGTCC
>Rousettus_aegyptiacus
CACCCTGACTTAGTCA-ACATTTTCTCTCAGAGTGTGATTTCCTCCATGT---ATGCATTCATTCACTT-----------
-TTTTATTAAGATATAATTGACATATAAC-----TTTATATTAGTTTCAGATGGACAACATAATGATTCAATATTTGTAT
ATATTGCTAAATAATCA-CCATAATGAGTCTAATTAAC--ATTCATCGCCGCACATAGTTAACGAA--ATTT----TGCA
TGT--GATGAGAACTTTTAAGATCTACTCTCTTAGCAACTTTCCAATATATGATACA---TTATTAACTGTAGTCACAAT
GATGTACATTTGATTGCCAGG-------------------ACTGGAAGTTTG-----------------ATATATCCATT
TACTT---ATTGGCTTCCTATTTTTTG-----TGTCTATCTTTT--GATTTGGCTTGCCA
>Condylura_cristata
CACCCAGAATTCATCA--AATTTTCTCTCAAAGCATAAATGTC-CTATAG------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------AATCACCCATT
TATTT---ACTGTTTTCATATTCATTTGGAGCTAAATGTCATTT--GCTTTGGCTTGTCA
>Erinaceus_europaeus
CAA--TATATTTGTCA-CTGTTTTCTCTCAGAGCACAACTTCCTCTATGT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------TTATATCTACT
CACTT---ATTGATTTTGTATTCTTCTGGTCCTAGAGATCCAAGAAGCTCTGGCTTCATG
>Homo_sapiens
CACCCTGAATTCCTCA-ATCTTCCCTCTCAAAGTATGACTCCTTCCACGT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------ATCCATCCATT
TATTG---ATTGGTTTTCTATTCATTTGGCC--------CTTTT--GTTGTGTCTTGACA



Bat146_LINE

>L1MA9_3END
---------------------------------------------------------------------------TTTTT
CCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGAT-ATACGTAT
ACATTGTGAAATGATTACCACAATCAAGCTAA------------TTAACATATCCATCACCTCACATAGTTACCATTTTT
TTGTGTGTGGTGAGAACAC-TTAAGATCTACTCTCTTAGCAAATTTCAAGTATACAATACAGTATTATTAACTATAGTCA
CCA-----------------------------------------------------------------------------
----------
>Canis_familiaris
TCTTTCCAGCCATACAAGATTATT-GTAATGATTGAAAGAGGTCATGTATG---TAGAAGCACTTTTT------------
-ATTTTTTATTGGGATATGTTCAACATATA-GTGTTGTATAAATTTAAGGTGTACCACATGTTGATTTGAT-TCATTGAA
AT-TTGGAACATGATGGCTCTTGTAGCAATAG------------T----ACTTCTATCACATCATATGAG---CATTTCT
TTTTA---GGTAGAAATAA-TTAAGATAGTGTCTCTTAGCACATTTGAGGGTTCTCATGCAACATTGC------------
------TAGAAGCACTTTTTTTT---AAACAGCAAAGAGATTTTAAAGGTGTATGGTAAT----------ACTCTTAT--
AAATCGA-TG
>Felis_catus
TCTTGACAGCCACGTGAGATTATT-GTAACGATTAAATGAGGTCATGTGTA---TAGAAACACTTTGC--------ATTT
TATTTTTTATTGGGATATGTTTGACACACA-GCAGTGTATAAATTTAAGGTGTACAACACGTTGATTTGGT-ACGCGGAT
AT-TTGGAACACGATTGCCATTGTAGCAGCAG------------TCAGCACCTCTGTCACGCCGTATGAGCGACATTCCT
TTGCA-GTGGTTGGATTAA-TTGAGATCTTGTCTCCTAGCACGTTTGATGATTCTAATGCAACGTCGT------------
------TAGAAGTAC---TTTTT---AAACAACAAGAGGATTTTAAAGGCGTGTGGTAAT----------ACTCTTAT--
AAATCGA-TG
>Manis_javanica
CCTTTCCAGCCACACAAGTTAATT-GTAATGA-TAAATGAGGTCATCTATG---TAGAAGCACT---T--------ATTT
TATTTTTTATTGAAATACGTTTGGCATAAA-ACATTGTGGAAATTCCTGG--TACAACATGTTGGTTTGAT-ACATTTAT
ATT----------ATTGCCATTGTAGTGGTAA------------TTAGCACCTCTGTCATGTCACATCAGTATCATTTCT
TTTCA-GTGGTTGGAATAA-TTAAGACCTAGTCTCTCAGCAAAGTGGATGATTATAATACAACTCTGT------------
------TG-------------TT---AG------AAGGGATTTTAAAGATGTATGGTTCTTACAGATGTAAATATTAT-A
AAATTAT-TG
>Sus_scrofa
ACTCTCCCGCCCTGCAAGGTTATT-GCAGTGATTAAATGAGATCATGCATG---GAGAGGCACTTTTT--------ATTT
TCTTTTTTATTGAAGTATGTTTGACCTAAA-GTATTGCATAAATTTAAGGCATATGACTTATTGATTTGAT-TCAACTGT
ATACTGCAATGTGATTGCCATTGTAGGAGTAA------------TTA--ACTCCTATCACGCCACATAATTAACATTTCT
TTTTA-GTGGTCGGAATAA-TTAAGGTCTAGTCTCTTAGCCTGTTTGATGATTGTAATGTAACGT---------------
------T---AACAC---ATTTT---AAGCAGCAGAGGGATTTTAAAGATGTGTGGTAAG----------AGTCTTAT-A
AAATTAA-CA
>Bos_taurus
TCTTTCCAGCCATGCAAGGCTATT-GTAATGATTAAACTAGGTCATGTATG---TTGAAGCACTTTTT------------
-ATTTTTTATTAAAATATATTTGACATGTG-GCATTGTATAAATTTAAGGTGTGTGACTT----ATTTGACACAGATTGT
ATCTTATA-----ATTGTCATCATGGCAATAA------------TTAACTCCTCTGTCATGTCACATAATT-TCATTTCT
TTTTG-GTGATTGGAATAATTTAAGATCTAGTCTCTTAGCAACTTTGATGATTGTAATAC--TGTTGT------------
------TAGAAGCTC---TCGTT---AAGCAGCAGAGGGATTTTGAAGATGTATGGTAAT----------ATTCTTAT-A
AAATTAAATG
>Equus_caballus
ACTTTCTGGCCACACAAGATTATT-GTAATGATTAAATGAGGTTATGTATG---TAGAAGCACTATTT---ATTTTCTTT
TATTTTCTATTAAAATACATTTGACATATA-AC---ATGTAAATTTAAGGTGTACAATACGTTGATTTGAT-ACATTTAT
ATATTGTAAT---ATTGCTGTTGTTGCAATAA------------TTAGCACCTCTGTCACATCACATAATTATCGTTTCT
TTTTA-GTGGTTGGAATAC-TTCATATCTAGTCTCTTACCAAGTTTCATGATTATAGCACAATATTGTT---T-------
------TAGAAGCAG---CTTTT---AAACAGCAAAAGGATTTTAAAGGT-----GTAAT----------ATTCTTAT-A
AAATTGG-TG
>Ceratotherium_simum
TTTTTCCAGCCACACAAGATTATT-ATAATGATTAAAGGAGGTCATATATG---AAGAAGCACTTCTA---------TTT
TATTTTTTATTAAAATATATTTGACATAAA-ACGTTATGTAAATTTAAGGTGTACAACATGTTGATTTGAT-ACATTTAT
AAATTGTAATATGATTGTTATTGTTGCGATAA------------TTAGCACCTTTGTCATGTCAGGTAATTGTCATTTCT
TTTTA-GTGATTGGAATAC-TTAAGATCTAGTCTCTTAGCAAGTTTGATGATTATAATACAATATTGTT---T-------
------TAGAAGCAC---TTTTT---AAACAGCAAAAGGACTTTAAACATGTATGGTAAT----------ATTCTTTT-A
AAATTGA-CA
>Myotis_myotis
TCTTTCCAGCCACCCAAGGTCATT-GTAATGGTTAACTGAGGTCATGTATG---TAGAAGCACTTTTA------------
-TTTTTTCATTGAAATATATTTGACATATA-GCATTGTGCAAGTTTAAGGTGTATAACCTGTTGTTCTGATAACATTTAC
ATATTGTAAT---ATTGCTGTTGTAACA----------------TAAGCACCTCTATCATGTCACGTAATTGC---TTTG
TTTTA-GTGGTTGGAATAA-TTAATATCTAGTCTCTTAGCAACTTTGATGATTATAATATGATATTATTAAAA-------
------GAGAAGCAC---TTTCT---AAACAACA----GATTTTAAAGATCTATGGTAAT----------AGAATTAT-A
AAATTGA-CA
>Rousettus_aegyptiacus
TCTTTCCAGCCACCCAAGATTGTT-TTAATGATTAAATGAGTCCATGTGTG---TAGAAGCACTTTAT------------
------------------ATTTGACATATA-ACATTGTGTAAATTTAAGGTGTACAGCCTGTCGATTTGAT-ATATTTAT
ATATTATAATGTGATTGCCGTTGTAACAATAACTAGCACCTCAGCTAGCACCTCTGTCATATCACGTAATTGTCATTTCT
TTTCA-GTGGTTGGAATAA-TTAATATCTAGTCTC--AGCAAGTTTAGTGATTATAAAAC--TATTGTT--GT-------
------TAGAAGCAC---TTTTT---AAACAGCTAAAGGATTTCAAAGATATATGATTAT----------ATTCTTAT-A
AAATTGA-CA
>Condylura_cristata
TCTTT--AGCCACACAAGATTATTGGTGACGGTTAAATGAAGTCGTGTATT-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------TAGAAGCAC---TTTTT---AAACAGCAAAGGGGTTTTAAAGATGTGTGGAAAT----------A--CTTAC-A
AAATTAC-TG
>Sorex_araneus
TC-TTCCCGACAC-----GTCGTA-TCAATGGTTAAATGATGTCTGGTATG-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------TAGATATGC---T-CA----ACATTGAAGGGGGTTTT---AGAAGCATGGTAAT--------------TGATGA
AAACTGT-TG
>Homo_sapiens
TCTTTCCAGCCACATGAGATTATT-GCAATGATTAAATGAGGTCATAAATG-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------TAGAAGCAC---TTTTT---ACACAGCGAAGTTATTTTAAAGAT-----GTAGT----------ATTCTTAT-G
AAAATGA-CG



Bat147_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
----------TATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACAC
CTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------
>Canis_familiaris
CCATC--TGTCTGATGCT-----CCGAACCTTCC--TGTATCATCTCCCATAGCACTATT-AGTATCT------------
-------------------------------------------------------------------TTAAGTGGTGCAC
CTGAAACTAATAC---------ATGTCCATTATACCTCAACTTAAAAAAAAAAAAAAAACTTTTTAAGAAATGCATTTGA
GGGGCAGCCCGGGTGGCTCAGTGGTTTTGTGCCTGCCTTCAGCCCAGGGCCTGATCCTAGAGCCCCAGGATCGAGTCCTA
CATCCTACGTTGGGCTCCCTGTATGGAGCCTGCTTCTCCCTCTGCCTGTGTCTCTGCCTCTCTCTCTCTGTTTCTCATGA
ATAAATAAATAAAATATTTTTAA---AAA------TG---CATTTGAG-TATTATGTAT-CAACACTGTAATACGTACAG
GAACATGT-ACTGA
>Felis_catus
CCATCTCTGTCCGATGCC-----CCTAACCTTCCTATATATAATCTCTGACAGCACTATACGGTACCT------------
-------------------------------------------------------------------TTATGTTATACAC
CGGAAACTGATAC---------ATGTCAATTATATCTCAATTT--------TAAGAAACTTTTTC---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------AAAA---AGTG---TATTTGAG-TATTATTGATCCAACACTGTAGTACGTACAG
GAACAC---AAGGA
>Manis_javanica
TCATCT----CTGATGCT-----ACTAACCTTCA--TTTATAATCTCCCACAGCATTAT--AGTCTCT---GGC-----A
TGAAAT------------------------AAGTG---ATTTCATAATATATACAAATACAGAATCATTAAGTTGTATAC
CTAAAACTATTT-----------TATAGATTACACCTCAAATT--------AAAAAAATTTT------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------AAG------TG---TATTTGAG-TATTATGTATCCAACACTACAATACGTATAG
GAATATGT-AATGA
>Sus_scrofa
CCATTT----CTGATGCT--------AACCTTCC--TTTAAAAGCCCCCACAGCACTATACAGTCTCT---AAT-----A
CA----------------------------AAGTGATCATTTTACAATGTATACAAATGTCAAATTGTT--GTTGTACAC
CTGAAACTAATGTTC------CATGTCAAATATAACTAAATTT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------AAAGA--AGTG------------TATTATGTATCCAACATTGTATTATGTCTAA
GAACATGT-AATAA
>Tursiops_truncatus
CCATCT----CTGATGCT-----ACTAACCTTCC--TTTAAAATCTCCCACAGCACTGTACAGTCTCT---AAT-----A
CCAAATA-----------------------AAGGGATCATTTCACAATATATACAAATATCACATTATTATGTTGTACAT
CTGAAACTGTTAC---------ATGTCAATTATACCTCAATTT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------AAAAAANNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNN
>Equus_caballus
CCATCT----CTGATGCT-----ACTAACCTTCC--TTTATAATTTCCCACAGTACTTTACAGTCTCT---AGA-----A
CAAAATC-----------------------AAGTGATCATTTCACAATATATACAAATATCAAATCATTATGTTGTATAC
CTGAAACTAATA-----------TGTCAATTATACCTCAATTTTTTTTTT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------AA-----AGTC---CATTTGAG-TATTATGTAGCCATCACCATAATATGTATAG
AAACAAGT-AATGG
>Ceratotherium_simum
CCACCT----CTGA----------------TTTC--TTTATAATTTCCCATAGCAGCATACAGTCTCT---AGT-----A
CAAAATA-----------------------AAGTGATCATTTCACAATATATATAAATATCCAATCATTACACTGTACGC
CTGAAACTAATACGT------TGTGTCAGTTATACCTGAATTTTTTTT--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------A------AGT----TATATGAG-TGTTATGTATCCAACACTGTAAAATGTATGG
AAACATGT-AATGA
>Myotis_myotis
CCATCT----CTAATGCT-----AGTAAGCTTCC--TTGAT-ATCCCCCACAGCACTATATAGTCTGT---AGT-----A
CAAAATA-----------------------AAATGATCATTTCACAATATGTACAAATAATGAATCATTATGTTGGACAC
CTGAAGCAAATATAA-TGTTACATTTCAATTATAGCTCAATAAAAATATAA-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------AAAATAAAGTA---TATTTGAG-TATTATGTATGCAGCACTATAATATGCATAG
GAACATGT-GATGA
>Rousettus_aegyptiacus
CCATCT----CTGATGCT-----ATTAAGCTTCC--TTTATAATCTCCCACAGCGCTACACAGTCTGT---AGT-----A
CAAATTA-----------------------AAGTGATCACTTTGTAATACCTACAAATACTGAATCATTAT-TTGTATAC
ATGAAACTAATATAA-TGTTACCTGTCAATTATACCTCAATAAA------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------AAAATTAAAAG---GATTTGAG-TATTAC--ATGCAGCATTGTAACATGCATAG
GAACGTGT-AATGA
>Condylura_cristata
CCATCT----CTGATCATCTCTGACTACCCTCCT--CTTATAATCTCC--CAGCACTATACAGTCTCT---AGGACAAAG
CAAAGTA-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------TATTTGAA-AACCATGTCTTCAATACTGTAACACATATAG
GAACATGT--GTGA
>Erinaceus_europaeus
CCATCT----CTGAAGCT-----ACTAACCTTCC--TTTAC-ATTTCCCATCGTACTACATAGTCTCC---AGT-----A
CAA--CA-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------C-TTTGCA-TATGATGTATACAACACTGCAATATATAG--
---------AATGG
>Homo_sapiens
CCATCT----CTGAGGCT-----ACTAACC------TTTGTAAGCTCCCACAGCATTATGCAATTGCT---AGC-----T
CAAAGTG-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------TACTTGAACTAGCAACACTCCAACACTGTTCTACGTATAG
GAAGATACAAATGA



Bat149_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
-----GTGGTTGCCAGGGGCTGGGGGGTG-----GGGGAAATGGGGAGATGTTGGTCAAAGGGTACAAAGT---------
---TTCAGTTATGCAGGAT-GAATAAGTTCTGGAGATCTAATGTACAGC----ATGGTGACTATAGTTAATAATACTGTA
TTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCACCACACACAAAAAAA-----TGGTAACTATGTG-
AGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGT----------ATACGTATATCAAAACAT-C
ACGTTG-----------------------------TACACCTTAAATATATACA-----------ATTTTTATTTGTCAA
TTATACCTCAATAAAGCTGGAAAAA-------------------------------------------------------
-------------------------------------------------
>Canis_familiaris
TTT-CTTATGTTATTGCATTAGCCAAAATTTACCCCAA-AAT-------AAATGTTTAT---AAAAATGATCAT-ACAGA
GA-----------CAGGAGGTGAG--GTG-----GGAGAAGTGGGTGAA-GGATGTCAAAAGTTATAAACTAAATAACTA
ATCTCTAGTTAT--AAAAT-AAATAACTTATGGGGATGCAATGTTCAAC----ATGGTGGAAATAGTTAATAATACTGTA
TTGTGTATTT-------ACTAACAGAGTAAATCTGAAAAGTTCTCATCAGGAGGGGAAAAAA---TTTGTAACTGTAAAC
AGATGATGG--------------------ATGGTGATCATTTTGAAATGT----------ATACAAATATTGAATCATGT
TTGATG-------------------------------------CAACTAATATA-----------A-TGTTATATGTCAA
TTATACCTCAGTAAAA-ATAAATTAAAA-------------ATAAATGGTCAT-AACTGAGA---GCTCTGTTTT-----
---------ACTCGTGATTGCTCATGAGAACCTTGAGTGATATTAGCTG
>Felis_catus
TTTCCTTCTGTTATTGCATTGGCCAGAATTTACCCCAA-TAT-------AAATGTTTAT---AAAAATGGCCAC-ACAGA
GG-----------CAGGGGGTGGG-GATG-----GGAGAAATGGGTGAA-GGAGGTCAAAAGGTACAAACT---------
---TCCAGCTAT--AAAAT-AAATAACTCACAGAGATGTGATGTTCAGC----ATGGTGACTCTAGTTAATAACACTGTA
CTGTACATTTCAAAGTGGCCAAGAGAGTAAAGCTGAAAAGTTCTCATCGCAAGAAAATAATC-TTTTTGTAACTACGTA-
AGGTGACGG--ATGTCAGCTGGACTTCCTGTG---ATCATTTTTAAATGT----------ATACAAATATCGAGTCAT--
--GTTA-----------------------------TACACCCGCAACTCATATA-----------A-TGTCATAGGTCAA
TTATAGCTCAATAAAA-ACAAACTAAAA-------------ATAAATGGTCGT-AACCGAGA---CCTCTGTTTT-----
---------ACTCCTGATTGCCCATGAGAATCTTGAGTGATATTAGCTG
>Manis_pentadactyla
TTT-CTTGTGTTATGGTATTATCCAGAATCTACACCAA-----------AAATGTATAT---AAAAAAGGTCAT-AC--A
GA----------------------------------------GGGTAAA-GTGGATCAAAAGTGAAAAATT---------
----CCTGTTAT--AAAAT-AAGTAAGTCATGG-GATGTAATGTATAGC----ATGGTGAC----ATTACTAATACTATA
TGGCAGATTTGAAAACTGCTAAGAGAATAAATCTTAAATGTTCTTATCACAGCAAAAAAA---TTTTTGTAACTGTATA-
--GTGACAG--ATGTTAACTAGACTTACAGT--TGATCATTTTGCAGTAT----------ATACAAATTTCAAACCAT-T
CCATTGTTTTGAAACCAATATTATATGTGTGATAATACATTATAAACTAATGTATAGTGTTATATGTTATAATATGTCAA
TTATACCTTAATAAAAGAAATAACAAATAGA----------ATAAATGGTCAT-AACTGAGA---GCCCTGTTTT-----
---------TCTCTGTATAGCCCATGAGAATCTTGAGTGATATCGGCTG
>Sus_scrofa
TTT-CTTGTGTTATTGCATTAGCCAGAATTTAATCCCA-AAT-------AAATGCTTAT---GAAAATGGTCAT-ACATA
GG-----------CAGGAGTGGCA--TTG-----GGAAAAGTGGGAAAA-GG-GGTCAAAATCT-CAAACT---------
---TCCAATTAT--------AAGTAAATCCTGGATATGTGATG-GTGGCTGTAATGGTGATTATAGTTAGCAATGCTTTA
TTGCATATTTGAAAATA----------------------------------------------TTTTTGCAACAA-----
AGGCAGTGA--ATGTTAACTAGACTTATTGTGGTGCTCATTTTCCAGTGT----------ATACAAGTATTGAATCAT-T
ATGCTA-----------------------------TA-ATCTGAAATTTA-----------------TGTTTTGTGTCAA
TTATACATCAACAAAATTAAAATTAAAA-------------TTAAAAAGTTAT-----GAGA---GCCCCGTTTT-----
---------ACTTGTGACTGCCCA-GAAAATCTTGAGTGATATTAGTTG
>Balaenoptera_acutorostrata
TTT-CTTGTGTTAATGCATTAGCCAGAATTTACCCCAA-AAT-------AAATGCTTGT---GAAAACGGTCAT-ACGTA
GG-----------TGGGGGGGGGGCGGTGATGTTGGGGAAATGGGTGAA-GGTGGCCGAAAGGTACAGACT---------
---TCCAATTAA--AAAAT-AAATGTGTGCTGGGGATGTGATGTACAGC----CTGGTGACTATAGTTAATAATGCTGTA
TTGCCGATTTGACATT-----------------------------------------------TTTTTGCATCTATGTA-
AGGTGATGG--ATGTTCACTAGACTTATCGTGGTGATCATTTTGCAATAT----------ATACAAGTGTTGAATCAT-T
ATGTTG-----------------------------TACACCTGAAACTAATACA-----------A-CGTTTTATGTCAA
TTATGCTTCAATAAAATAATAAATAAGTAAAAATGAAA---GTAAATGGTTAT-AACTGAGA---GCCCCATTTT-----
---------GCTC--GATTGCCCA-GAAAATCTCGAGTGCTATTAGTTG
>Equus_caballus
CTT-CTTGTGTTATTGCATTAGCCAGAATTTACCCTAA-AAT-------AAATGTTTAT---AAAAATGACCAT-ACAGA
GG-----------TGGGAGGTGGG--GTG-----GGAGAAATGAGTGAA-GG-GGTCGAAAGGTATCAAGT---------
---GTCAGTTGT--AAAAT-TAGTAAATCCTAAGGATGTAATGTACAGT----GTGGTGACCATTGTTAGTAGTACTGTA
GCATATATTTGAAAGTTGCTAAGAGAGTAGATCTTTGAAGTTCTCATTGCCAGAAAAAAAATTTTTTTGTAACTATGTG-
TAATGATGG--ATGCTAACCAGACTTATTGTGGTTATCATTTCACAATGTACATTTTCACACACAAGTATCAAAATGT-T
ACATTG-----------------------------CACAACTGAAACTAATATA-----------A-TGTTGTCTGTCAA
TTATATCTCAATTAAAAAATAAGTAAAA-------------ATAA-----------ATGAGA---GC-CTGTTTT-----
---------ACTCCTGATTGCCTAGGAGAATCTTGAGTAATATTAGCTG
>Ceratotherium_simum
TTT-CTTGTGTTATTGCATTAGCCAGAATTTACCCCAA-AAT-------AAATGTTTAT---AAAAATGGTCAT-ACAGA
GG-----------CAGGGGTGTGG-GGTG-----AGAGAAATGAGTGAA-GGGGGTC-AAAGGTAGAAAAT---------
---TCTGGTTAT--AAAAT-AAATAAGTCCTAAGGAGGTAATGTACAGC----ATGGTGACCATAGTTAGTAATACTGTA
TTGTATATTTGAAAGTTGCTAAGAGAGTAGATCTTAAAAGTTCTCATCACAAGAAAAAAAATTTTTTTATAACTATCTA-
TAGTGATGG--ATATTAACCAGAGTTATTGTGGTTATCATTTCACAATGT----------ATACAAATATCAAATTGT-T
ATGTTG-----------------------------CACACCTGAAACTAATATA-----------A-TGTTGTATGTCAA
TTATATCTCAATTGAAAA-----------------------ATAAGCAGTTGT-AAATGAGA---GC-CTATTT------
---------ACTCCTGATTGCCTATGAGAATCTTGAGTAATATTAGCTG
>Myotis_myotis
TTT-CTTGTGCTATTGCATTAGATAGAATTTACCCCAA-AAT-------AAATGTTGAT----AAAATGCTTAT-CCAGA
AG-----------CAGGAATGGGA--GTG-----GGA-ATATGGGTGAA-GAGACTCAAAAGTTACAAACT---------
---TCCAGTTAT--AAAATAAAATAAGTCATGGGGAGATAATGTATAGC----ATAGTGGCTACTATTAATAATACTGCA
TTGTATATTTGAAAGTTGTTAAAAGAGTAAATCTTAAAAGATCTCAT----GTATGAAAAAATTTTTTGTCAGTGTGAT-
AGGTGACAG--ATGGTAACTAGACTTATTGTGGTGATCATTCTACAATGT----------ATACAAATATTGAATCAT-T
ATGTCA-------------------------------------AAATGAATATA-----------A----TATATGTCAA
TTATACCTCAATAAAA-AGTAAATAAATAAA----------ATAAATGGTCATAAACCGAGA---GCCCTGTTTT-----
---------ATTTTTGATTGCCCACGAGAATCTT-AATGATATTAGCTG
>Rousettus_aegyptiacus
TTA-CTTGTGTTATTGCATTAGTCAGAATTTACCCAAA-AAT-------AAATGTTTAT---AAAAATAGTCAC-ACAAA
GA-------------TGGGGTGGG--ATG-----GGAGAAATGGATAAA-GGGAGTCAAAAATTACAAACT---------
---TTCAGTTAT--AAAAT-AAATAAATCATGAGGATCTAATGTACAGC----ATGGTGACTATTGCTAATAATACTTTA
TTGCATATTTGAAAGTCGCTA--AGGGTAAATCTTAAAAGGTCTCATTGCAAGAAAAAAAT--GTTTTGTGACTGTGTA-
AGTTGACAG--ATGGTAACTATACTTATTGTGATGATCAATACACAATAT----------ATACAAATATCGAATTAT-T
ATGTCA-------------------------------------AAATTAATATA-----------A-TGTTATATGTCAA
TTATACCGTAGTAAAAATAAAAATAAAAATA----------AAAAATGGTCAT-AACTGAGA---GCCTTCTTTA-----
---------ACTCTTGATTACCCATGAGAATCTTGAGTGATATTAACTG
>Condylura_cristata
TTT-CTCCTGTTACTGCATTAGCCACAATTTACCCCCAGAAT-------AAATACTCAT---AAAATCGGTCATTA-TGG
GA------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------GTCCTGCTTTTTTTT
TTTTATGAGAGTCTTGATTGTCCATGGGAATCTTGAGTGATATTAGCTG
>Solenodon_paradoxus
TTT-CTTGTGTTATTGCATTAGCCACAATTTACCCAAA-AAT-------AAATGTTCAG---AAAATCAGTCATTATTAA
GA------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------CTCCTGTTTC-----
---------ACTCTTGATTTCCCATGTGAATCTTGAGTGAGATTAG-TG
>Homo_sapiens
TTT-CCTGTGTTATTGCATTTGCCAGAATTTACCAACA-AATGTTAAAAAAATATTCAT---AAAAACAGTCATAACTGA
GA------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------GTGCTGTTCT-----
---------GTTCTTGATTGCCCGTAAGAATCTCGAGTGAGGTCAGCTG



Bat151_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
-------------------------------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGT-ATATA
TTTAAGGTGTACAACGTGATGTT--------TTGAT--ATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATT
AACATATCCATCACCTCACATAGTTACCATTTTTTTGTGTGT-----GGTGAGAACACTTAAGATCTACTCTCTTAGCAA
ATTTCAAGTATACAATACAGTATTATTAACTATAGTCACCATGCTGTACATTA---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
>Canis_familiaris
CTTTTGTCTGTAGGGGGAAAAGAGGTATCTAAGGG---AAAAAGTCAGAAACTGAAGGAATCTGC---TATCTTGATCTA
A--TTT---CTCTCT-----T--------AAAAATTTCAACTTGATCAAGGTATAATTGACAAAC-AAAGTTGTAAGATA
TTTAAAGTGTACATCGTGGTAAT--------TTAAT--ATACATAAAAGTTGTGAAAGGATTTCTCCCATCCAGTTACTT
AACACATCCATTACTTTACATATTCATCATTTTTTTCTTCT------GGTGAGAACACTTAAGTTCTACTTTCTTAGCAG
ATTTCAATTATATGATACGGTGTTACTAATTACAGTTACCA---------------CATCTTGATCTAATTTCT---GAG
AGACTGTTCTAAAATGTAAATCATATTATGCC------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------ATGATTGAAA
>Felis_catus
CTTTTGTCTGT-GGGG-------------------------------GAAACTGAGAGGGTCGGC---TGCCTTGATCAA
A--TTT---CTCTCT-----TTTTT----AAAAATTTCAGCTTGATTAAGGTGTAATTGACAAATAAAAATTGTAAGTTA
TTTAAAGTGTACATCGTGGTAAT--------TTAT---ATACATA-ATATTGTAAAAGGATTTCTCCCATCCAGGTTATT
AACACATCCATCACCTCACATATTTATCATTTTTTTTCTTTT-----AGTAAGAATACGTAATTTCTATTTTCTTAGCA-
----CAATTATACCATACTGTGTTATCAAGTATAATTACCA---------------TGTCTTGATCTAATTTCT---GAG
AGATCTTTCTAAAATGTAAATCAGATTATGCCATTTCC------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------ATGATTGAAA
>Manis_pentadactyla
CTTTTGTCCTG-GGAGG---------------------GAAGAATCAGAAACTGAGGGAATCTGC---TGTCTTAATCTA
A--ATT---CTCTCT-----TTTTT----AAAAAAATCAACTTCATTGAGGTACAATTGACAACT-------GTAAAATA
TTCAAAGTGTACATCATGGTGAT--------TTTG---ATATCTAAATGTTATGAA------------ATATAGTTAATT
AATACACCCATCGCCTCATGTACTTATCTTTTCTGTTTTTAATTT-TGGTGAGAACATTTAAGTTCTACTCTTTTAACAG
ATTTCAGTTATACAATACAGTGTCATCAACTCTAGTCACCA---------------TGTATTTATCTAATTTCT---GAG
GG----TTCTAAAATGTAAATCAAATTATGACATTTCC------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------ATGATTGAAA
>Sus_scrofa
CCCCTCCCCCC-GGGGGAAAAGAGGTATC--AGAG--AAAAAGATCAGGAAGTGCAGGA----CC---TGTCTTGACCTC
A--TTT---CTCTCT-----TTTTT--CTTAATATTGCAGTTTGATTGAGGTATAATTGACAAAC-AACATTGTAAGATA
TTTAAAATGTGCGTCAAGAAGAT--------TTAATCGATACCTAAACATTGTAAAAGGATTTCCCTCATCTAGTTAATG
AACACATCCATCACCTCATACATCAATCTCTTTTTTTTTCTTTTT--GGTGAGAACATTTAAGTTTTACTCTTTTATCAG
ATTTCGATCATACAATACCATGTTATCAACTACAGTCACTG---------------TGTCTTGATCTAATTTCT---GAG
AGAAGTTCCTAAAATGTAAATCACATTGTGCTACTTTCTTTTAACTATTATTGAAGTGTAGTTGATTTACTAGGTTGTGA
TAATTTCTACTGTACAACAAAGTGATTCAGTGATACATGTACACACATCTATTCTCTTTTAGATTGCTTTTCCACATAGA
TTATCACAGAATAACGGGGACCTACTGTATAGCACAGGAATTGAGCCGCTTTGGTGACTAAAA
>Tursiops_truncatus
CTTTTGTCCTA-GGAGGAAAAGAGGTATC--AGAG--AAAAGAGTCAAGAAATGTGAGAGTTTGC---TGTCTTAATCTA
A--TTT---CTCTCT-----TTTTTTCCTTAAAATTTCAGTTTGATTTAGGTATAATTGACAAAC-AACATTGCAAGATA
TTTAAAGTGTGCATTGTGGAGAT--------TTAATCAATATCTAAACATTGTGAAGGGATTTCCCTCATCTAGTTAATT
AACACATCTATCACCTCACATATTCGTCTTTTTTTTTTTTTTT----GGTGAGAACCTTTCAATTTTACTCTCTTAGCAG
ATTTTAATTATAGAATACAGTGTTATAATCTATAGTCACTA---------------TGTCTTNNNNNNNNNNNN---NNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------NNNNNNNNNN
>Equus_caballus
CTTTTGTCTTG-GGGGGCAGAGGGGCA--TGTGAG--GGAAGAGTTAGGAACTGAGGGTGTCTGC---TATCTTGATCCA
A--CCT---CTCTCT-----TCTTT----AAAAAATTCAGCTTTATTGAGATACAATTGACAAAT-AAAATTGTAAGACA
TTTAAAGCGTACATCGTGGTGAT--------TTGAT--ATACATATATATTGTGAAAGGATT-GCCCTGTTTAGTTAATT
AATGCAACCATCACCTCACATATTTACCATATTTACCTTTTTTT---TATGAGAACATTTAAGTTCTACTCTCTTAGCAA
ATTTCATATATACAATACAGTTTTATCGACTATAGTCACCA---------------TGTCCTGATCTAATTTCT---GAG
AGATCTTCCTAAAATGTAAATCAAAGTATGCCACTTCC------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------AAGACTGAAA
>Tapirus_indicus
TTTTTGTCCCG-GGGAGAAGAGGAGCA--TGTGGG--GGGAGAGTCAGGAACTGAGAAAGTCTGC---TATCTTGATCTG
A--TCT---CTCTTT-----TTTTT------AAATTTCAGGTTTATTGAGGTATAATTGACAAAT-AAAGTTGTAAGATA
TTTAAAGTGTACATCGTGGTGAT--------TTG----ATACATATCTATTGTGAAAAGATT-CCCCCATTTAGTTAATT
AACATATCCATCACCTCA--TAGTTATCTTTTTTTTTTTTTCT----GGTGAGAACATTTAAGTTCTGCTC--TTAGCAA
ATTTCAATGATACAATACAGTGTTATCGACTGTAGTCACCA---------------TGTCTTGATCTA-TTTCT---GAG
AGATTTTTCTAAAATGTAAATCAAATTATGCCACTTCC------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------GTGATTGAAA
>Myotis_myotis
CTTTTGTCCTG-AGGAAAAATGAAGTATCTGGGGGAAAAAAGAGTCAGGAAATGAAGGAGTCTGC---TGTTTTGATCAA
A--GTT---CTCTCTCTCTCTCTCTCTTTTAAAAAATTAGCTTAATTGAGATATTAATGACAAAT-AAAATTATAAGACA
TTTAAAGTGTACATTGTTGTGATTTGCTATATTGAT--ATATGTAAACATTGTGAAAGGATT--CCCCATCTAATTAATT
AACACATCCCTCACCTCACATATTTATCTTTTTTGGGGGCGGGGGAAGGTGAGAACATTTAAGTTCTACTCTTTTAGCAG
ATTTCAAATATATACCACAGTGTTATCAACTATGGTCACCA---------------TGTCTTGATCTAATTTCT---TAG
AGATC-TTCTAAAATGTAAA-CAAATTATGCCACTTGC------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------AGGATTGAAA
>Rousettus_aegyptiacus
TTATTTTCCTA-GGAGGAAATGAGGTAAGTGGAGG--AAAAGAGTCAGGAA-------------C---TGTCTTG-TCTA
A--TTT---TTCTTT-----TTAA-----AAAATTTTCAACTCGATTGAGAAATAATTGACAAAG-AAGATTGTAAGACG
GTTAAAGTATACATTGTGGTGAT--------TTGAT--ATATGTAAACATTTTGAAAGGATT-CTCCCATCTAGTTAATT
AACACATCCATCACCTCATATATCTACATATTTT---------------TGAGAACATTTAAGTTCTACTCTCTTAGCAG
ATTTCAGTTATCTAATA--ATATTATCAACTATAGTTACCA---------------TGTCTTGGTCTAATTTCT---TAA
AGATCTTTCTAAAATGTAAATCAAATTATGCCACCTCC------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------ATGATCGAAA
>Condylura_cristata
CTTTTGCCTGT-GAG----------------------AAAAGAGTCAGGAACTTA--GAGTCTTC---TGTCTT------
---TCC--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------CAG
AGAACTTTTAAAA---TAAGCCAAATTGTGGCACTCTC------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------GTGATCCAAA
>Sorex_araneus
CTTTTGTATCT-GAGTG--------------------AAAAGAGTCATGAACTGAGGAACTCTGC---TGTCTTGATTGA
ATTTTT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------GAG
AGATCTTTC-AAAACATGAATCAAATCATATGACATCT------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------CTGAATGAGA
>Homo_sapiens
CTTT-GTCCCT-GGGGGAAAAGAGGTATTTG------GTAAGAGTCAGGAATTGACGGAGTCTGC---TGTCTTGATCGA
A--TCT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------GAG
AGATCTTTAAAAAATGTGAATTAAACAATGCTGCTTCC------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------ATGACTGAAA



Bat152_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
-TTTTTCCAGCTTTATTGAGGTATAATTGACAA-ATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATAT
ACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTACCATT-TTTTTGTG
TGTGGTG-AGAACACTTAAGATCTACTCTCTTAGCAAATTTCAAGTATACAATAC-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------
>Canis_familiaris
AGTGTTGTGCTGTGTTGTCTCTAATC----GACATTAGATTTTTTTCAGAATATCC---TTCAC--TTTATTTAT-----
TTATTTA----TCCATTGAGATATAATCGACTT-------GTTATATTAGTTTTAGGTGTACAAC---ACGATTTGATAT
ATGTCTATGTTGTGAAATGATCACCACAATAAGTCTAGTTAAT--ATCCATCACTATGCATAGTTAGAATT-TCTTTTCT
TGTGATG-AGAACCTTTAAGATCTATTCTCTTAGCAATTTGCAA------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------TTTAC--ATT-GTTTTT---AAAATGTC-----------AACTAGAG-C
TGTTTAATCTGTTCCCAGTCTTCCCATTTCTGAG
>Felis_catus
TGTGTTTTGGTATATTGTCTGTAACG----AACCTTAGA--TTTTTTAGAATATTC---TTCACTA--TATTTAT-----
TGGTTTATTCATCAATTGAGATATAATTGACTT----------ATATTAGTTTTAGGTGTGCAACATGAGGATCTGATAT
ATGTATATGTTGTGAAATGATCACCACAATAAGTCTGGTTACT--ATCCATCACTATGCATAGTTACATTT-TTTTTTCT
TGTGATG-AGAACCTTT-AGGTCTGTTCTCTTAGCAACTTGCAACTCACGTTTGTTTTTTTCTTTTTAATGTTTATTTAT
TTTTGAGGGGGGAAGGGGCAGAGAGAGAGGGAGACAGAATCTGAAGCAGGCTCCAGGCTCCCAGCTGTTAGCACAGAGCC
CAATGCAGGGCTCCAACTCACTAACTGTGAGATCATGAGCTGAGCCAAAGTCTGACGCTTAACCAACTGAGCCACCCGGG
CATCCAACACATTTTTTTAAATGTCTACTTATTTATTTTTGAAAGGGGCATAGAGGGGGTGGGGGAGACAGAGAATCACA
AGCAGGCTCCATGCTGTTGATGCGGGGCTCGAACTCACGAACTATGAGCTCATGACCTGAGCTGAAATCAAGAGTCTAAG
AGCTAACTGACTGAGCCATCCAGGCACC---CCTAC--ATTTGTTTTT---AAAATGTC-----------AACTACAG-C
TGCTTAATCTGCTCCCAGTCTTCCCATTTCTGAG
>Manis_pentadactyla
TGTGCTGTGGTATGTTGTCTCTAAAA----AAC-TTACA--CCTCTCAGAATCTTC---TTCATAATTTATTTAC-----
TTATGTGGTTGTAAATTGAGAAGTAGATGACTTACATAACATTGCACTAGTTTCAGGTGTACAACATAATGATTGGATAT
ATATGTATATTGTGAAATGATCACTGCAGTAA-----GTTAAC--ATTCATCAC-----------AAACTT-TTTCTTCT
TGTGATG-AGAACATTTAAGATCTACTTTCTTGGAGGCTTCCAA------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------TTCAC-AATTTATTTTT---AAAATGTC-----------AACTAGAG-C
TGCTTAGGCTGCTCCCACTCTTCCCATTTCTGGA
>Sus_scrofa
TGTGCTGTGGTTTATTGTCTATGATT-------TTTAGA--TTTTACAGAATATTC---TTAACAA-----ATAA-----
--TTACA-------ATTAGTATATATTTTACTT-----ACATTATATTAGTTTCAAGTGTACACCATAATCACTCAATAC
ACATATGTACTGCAAACTCATTGCCGCAGTAAATCTAGTTAGC--ATCCATGGTGACACATAGTCACAAATACTTTTTCT
CATGATG-CAAACTTTTAAGACCTACTCTC-AAGCAGTTTTCAA------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------TTCAC-AGTTTATCTTT---AACATGTCTTTAATGGACATGTTAAAGAT
TGCTGAACCTGCTCCCAATCTTCCCATTTCTGAG
>Bos_taurus
TGTGTCATGGTTTATTGTCTCTGATCTAATGGCTTTTGA--TTTTGTGGAATATTC---TTCAT---------GA-----
CTACTTA-------ATTTAGACATAATTTATTT--ACAACATTATGTTAGTTTCAGGTGTGCAAACTAATGATTCAATAG
ACACATATATTGCAAACTGATCGCCATAGTAAGTCTACTTAAC--ATCCATCAC------------AAAGT-TTTACCCT
CGTGATGTAGAACTTTTAAGACCTACTCTC--AGCAATTTTAAA------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------TTCAT-AACTTATTATT---TAAATGTC-----------AACTTGAA-C
GGCTGAAACTTCCCCCTGTCTTCCCAATTCTGAG
>Equus_caballus
TGTGCTGTTGTATATTGTCTCTAATA----GTCTTTAGA--TTTTTCAGAACATTC---TCCACAATTTACTTAT-----
--TTTTA-------ATTGAGATAGAATTGACTT----------ATATTAGTTTCATGTGTACAACA-AATGATATTATAT
ATG---ACATTATGAAATGATCACCACAATAATTCTAGTTAAC--ATCCATCAT----CACAGTTACAGAT-TTTTCCCT
TGTGATG-AGAACTTTAAAGATCTACTCCCTTAGCAACTTTCAA------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------TTCAC-AATTTATGTTT---AAAATGTC-----------AATGAGCG-C
TGCTTAATCTGCTCTCGATCTTCCCATTTCTGAG
>Ceratotherium_simum
TGTGGTGTGGTATATTGTCTCTAATA----GACTTTAGA--TTTTTCAGAATATTC---TTCACAATTTACTTTT-----
-----TA-------ACTGAGATATAATTGACTT--ATAACATTGTATTAGTTTCACGTGGACAACAAAATGATGCGATAT
ATGTATATATTGTGACATCATCACCACAATAAGTCTGGTTAAC--ACCGATCAC--CACACAGTTACAAAT-TTTTTTCT
TGTGATG-AGAACTTTTAAGATCTACTCCTTTAGCAACTTTCAA------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------CTCAC-AATCTATTTTT---AAAATGTC-----------AACTAGAG-C
TGCTTAATCTGCTCCTGG-CTTCCCATTTCTGAG
>Myotis_myotis
TGTATCGTGCTACATTGTCCCTAATA----GATTTTAGA--TTTTTCAGAATATTC---TTCACAATGTCTTTAT-----
--TTTTA-------ATTGTTATATAATTGACTT--ATAATGTTATATTAGTTTCAAGTATACAACATAATGATTCGACAA
ATGTACTTATGGTGAAATTATTACCACGGTAAGTCTAGTTAAC--ATCCATTTCCACAC---GATGACAGT-TTTTTTCT
TGTGATG-AAAATTTTTAAGATCTACTCTCTTAGCAACTTCCAA------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------TTCATCAATC-ATTTTT---CAAATGTC-----------AACTAGAG-C
TGCTCAATCTGC-CCCAATCTTCCCATTTCTGAG
>Rousettus_aegyptiacus
TGTGTTGTGCTATACTGTCTCCAATA----GACTTCAGA--TTTCTCATAATATTC---TTCACAATTTATGGAT---TT
ATTTTTA-------ATTGTGATATAATTGACTT--ATAACATTATATTAGTTTCAGGTATACAACG--------------
-------TATCGTGAAATGATTACTACACTAAGTCTAGTTAAC--AGCCATCATGACACATGGATATCAAT-ATTTTTCT
TGTGATG-ACAACTTTTGAGATCTACTCTCTTAGCAACTTTCAA------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------TTCACCAATC-ATTTTT---CAAATGTC-----------AACTAGAG-C
TGCTTAATCTGCTTCTGGTCTTTCCATTTCCTAG
>Condylura_cristata
CGAGCTGTGCTGTATCTTCACCAGCA----GACCTTCGG--TTTTCCAAATTATTC---CTTACAATGTATTTTT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------CAAATGTC-----------AACTAGAG-T
GACCTGATTTGCTCCCGGTTTTCCTATTTCTGAG
>Erinaceus_europaeus
AGTCTTGTGGTATGTGGTCTCCG-----------TTAGA--CTTTCCAGAATGGTC---TCCATGAATCAATTTG-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------AAAATATC-----------A---------
-GCTTGATCTGCTCTTAGCCTTCCTATTTCAGGC
>Homo_sapiens
------------------------------GATTTTAGA--TTTTTCATAATATCC---CTCACAGTTTATTGTA-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------AAAATGTT-----------AATTAGAG-C
TGCTTAGTCTGCTACCAGTCTCCCCACTTCTGAG



Bat156_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGT---GATGTTTT
GATA-TACGT----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------ATACATTGTGAAATGATTACCACAATCAAGC----T
AATTAACATATCCATCACCTCACATAGTTACCA----TTTTTTTGTGTGTGGTGAG------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------AACACTT-AAGATCTACTCTCTTAGCAAATTTC-AAGTATACAATACAGTATTATTA---ACTATAGTCA
CCATGCTGTACATTAGATCTCCA-GAACTTATTC----------------------------------------------
---------------------------------
>Canis_familiaris
GTAAAA----------CTATATTC--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------TTAATAAGCA--TTCAGTAAACTTTTCTGGATATT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------CTTTATT---GATAAAGTTTT
T--------TTGTTTCTATTGAAGTATAATGGACCTA-----ACTATATTAATTTCAGGTGTATGGTGTAACAGTGATTT
GATA-TGTGC----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------ATATATTGCTAAATGTCCACCA----AAATC-----
---TAAC--ATCTATCACCATATGTAGTTATACA---TTTTTTTTCTTGCTATGAGAA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------AACTTTT-AAGATCTACTCTCATAGCAATTTTC-AAATACACAGTACATTATTATTATTAACTATAATCA
CCATGCTATATATTACATTCCCATGA-----------GGCA---ATT---TC---ATATAGAAACTTTT-ATATTTGACA
TC-ATAGTGTAGGGGAA---GAAACA-TTTTCC
>Felis_catus
GTAAAACACAC-----CTTCATAT--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------AAACATAGATTA---TTAATAAGCA--TTCAGTAAACTTTTCTGGATATT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------TCTTTGTT---GACAAAGTTTT
T-----------TTTGTATTGAAGTATAATTGACATGT-AACATTATATTCATTTCAGGTGTACAACAT------GATTC
ATTA-TATGT----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------ATATATTGCTAAATGTCCACCACAATAAATCTAATT
AATTAAC--ATTCATTACCATATGTAGTTAACAA---ATTTTTTTCTTACAATGAGAAATTTTTTTTAGAATTTTTTTTA
AGTTTATTCATTTATTATTTCTGAGAGAGAGAGAGAGAGAGGGAAGGAGAGGGAGAAAGAGAGAGAGAGAGAGAGAGTGT
GCACAAGCAGGATGGGGCAGAAAGAGAGGGAGACACAGAATCCAAAGCAGGCTCCAGGCTCTGAGCTATCAGCATAGAGC
CCAAACAGGGCTCCAACCCACAGACTGTGAGTTCATAACCTAAGCCGAAGTTGGATGCCTGATTGTGCTACCCAGGCACC
CCTCCATGAGAACTTTTTAAGATC---TCTCTCAGCAGTTTTC-AAATATGCAGTACAGTATTATTATTAATTACAGTCA
CCATGCTGTATGTTATATTCCCATGA-----------GACAAAGATACTATG---TAGTAGAAACTTTT---GTTTAACA
CC-ATAGTGTAGGGGAG---GAAAAATTTTTCT
>Manis_javanica
ATATAATACCT-----TCATATAT--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------ATATATATATAGAGAGAGAGAGGTTA---TTAATAAGCA--TTCAATAAACTTTTATGGTTATT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------TGTT---GACAGATTTTC
A-------TGTAGCTTTATTGAAGTATAATTAACAT---AACTTTATATTAGTTTCAGGTGTGCA---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------ATAGATTGCAAAATGATCACTACACTATGTC----T
AGTTAAC--ATCTATCACCA---ATAGTTACAG----TGTTTTCTCTTGTGATGAA------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------AATTTTT-AATATATATTCTCTTAGCAACTTGG-AAATGTGCAATATATTATTCTTG---ACTGTAGTCA
CCATGCTGTACTTTATATCCTCAGGA-----------GACAAAGATT---TT---AGATAGAAACATTGGATTTTTGACA
CC-ATAGTATAAGGGAG---GAAAAACTTTGCC
>Sus_scrofa
GTAAAATACAC-----CTTCATAT--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------AAATATGGATTA---------AGTATTTTTCATAAACTT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------TATC---AACAAAAGTTT
T--------------TTATTGAGGTGTAATTGACATA-----------TTAGTGTCAAATATACAAAAT---AATGATTT
AGTA-TTTGT----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------ATATATTGCAAAATGATCCTTACCATATGTC-----
---TAAT--ATCCGTCACCATACATAGTAACGAAAGGTTTTTTTTCTTGTGATGAG------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------AACTTTTAAAGATCTACTCTCTTGGCAACTTTC-AAATAGGCAATACAGTATTGTTA---GCTACAGTCA
CCAGGTTGTACATTACATCCCTATGA-----------GACAGAAATT---TT---AGATAGAAACATTTGGTGTTTGACA
----TAGTTTAAGGGA----GGGACAATTTTCC
>Bos_taurus
GTAAAATGCAC-----CTTCATAAAACTGTGGTGTGGGAGAAAACTCTTGAGAGTCCCTTGGACTGCAAGATCAGCCCTG
GATGTTCTTTGGAAGGAATGATGCTAAAGCTGAAACTCCAGTACTTTGGCCACCTCATGCGAAGAGTTGACTTATTGGAA
AAGACTGATGCTGGGAGGGATTGGGGGCAGGAGGAGAAGGGGACGACAGAGGATGAGATGGCTGGATGGCATCACCGACT
CGATGGACATGAGTCTGAGTGAACTCCGGGAGTTTGTGATGGACAGGGAGGCCTGGCGTGGTGTGATTCATGGGGTCGCA
AAGAGTTGGACAGGACTGAGTGACTGAACTGAACTGAA--CTGAAGGATA--TTCAGTAAACTT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------TATT---GACAAA-GTAA
C-------TTTTTTTTTATTGAGGTATAGTTTATATAT-AACATTACATTAGTTTGAAGTATATGACAT---AATGATT-
AGTA-TTTGTATATGTTGGACAAAGAAGGCAATGGCACCCCACTCCACTACTCTTACCTGGAAAATTCCATGGATGGAGG
AGCCTGATAGGCTGCAGTCCATGGGGTCGCTGAGGGTCTGACGCTATTGAGCGACTTCACTTTGGCTTTTCACTTTCATG
CACTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTGCCG
TCTATGGGGTCGCACAGAGTCGGCCACAACTGAAGCGACTTAGCATATGTTGGAAAATGATCCTTATAATATGTC----T
AGCAACC--ATCCATCACCATACATAGAAGCAAT--TTGTGTGTGTGTGTGATGAG------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------AGCTTTC---AATCTACTGTCTTAGCAACTTGC-AGATATGCAGTACAGTATTATTA---GCTGTAGTCA
CCATGCTGTACATTACATCCCCATGA-----------CACAGAAATT---TT---AGATAGAAACATTTGATGTTTGACA
TTATTAGTGTAAGGAAG---GAAAAATTTTCCC
>Equus_caballus
GTAAAACACAC-----CTTCATGT--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------AAGCGTAGATTAAT-CTGTTAAGCA--TTGAGTAAACTTT-CTGGATATTGACAG
AGTTTTTC------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------TGGATGTT---GACAAA-GTTT
T------AAAAATTTTTATTGAGGTATAATTGACATAT-AACATTATGTTAGTTTCAGGT-TATAACAT---AATGATTT
GATA-TTTGT----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------ATATATTGCGAAATGATC---ACAGTAAGTC----T
ACTTAAC--ATTTGTCACCATGCATAGTGACAAA---TTTTTTTGCTTGTGATAAG------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------AACTTTT-AAGATCTACTCTCTTAGCAACGTTC-AAATGTGCAGTACAGTATTATTA---ACTATAGTCA
CCATGCTGTAGATTACATTCTCGTGA-----------GACAAAGA---------------------TTTGATGTTTGATA
TC-ATAGTATATGGGAG---TAAGAATTTTTCC
>Ceratotherium_simum
GTAAAACACAC-----CTTAATAT--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------AAACAAGGATTAAT-CTGTTAAGCA--TTCAGTAAACTTTTCTGGATATTTATTT
ATTTTTTTTTGTTATTTTATTTATTTATTTTTTCCCCAAAGCCCCAGTAGATAGTTGTATGTCATAGCTGCACATCCTTC
TAGTTGCTGTATGTGGGACGCGGCCTCAGCATGGCCGGAGAAGCGGTGCGTTGCTGCGCCCCTGGGATCCGAACCTGGGC
CGCCAGTAGCGGAGCGCGCGCACTTAACCACTAAGCCACGGGGCTGGCCCTGGATACTTATTTGTT---GACAAA-GTAT
T---TTTTGTTGTTTTTATTGAGGTATTATTGACATAT-AACATTATATTAGTTTCAGGTGTATAAGAT---AATGATTC
GATA-TTTGT----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------ATATATTGCAAAATGATCACCACTGTAAGTC----T
ACTTAAC--ATGCATCACCATACGTAGTTATAAA----TTTTTTTCTTGTGATGAG------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------AACTTTT-AAGATCTGCTCTCTTAGCAACGGTC-AAATATGCAATATGGTATTATTA---ACTATAGTCA
CTGTGTTGTACATTACATTCCCGCGA-----------GACAAAGATT---TT---AAATAGAAACATTTGATGTTTGATA
----TAGTGTAGGGGAG---AAAAAATTTTTCC
>Myotis_myotis
GTAA---CCCT-----CTTCATAT--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------AAACATGTATTG---TTAATAAGCA--TTCAGTAAACTTTACTGAATATT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------TGTT---GACAAGA-TTT
T---TATTACTGTTTTTATTCA-GTATAATTGACAT--------TATATTAATTTCAGGTGTACAACGTG--AATGATTT
GATATTTTGT----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------ATATATTGCCAAATGATCACCACAATAAAGT-----
---TAAC--ATCCATCATCACACATAGTTACAAA---TTCTTTTTCTTGCAGTGAG------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------AACTTTT-AAGATCTATTCTCTTAGCAACTTTT-AAATATACAGTACAGTATTATTA---ATTATTGTCA
T--------------GATCCCCATGA-----------GACAAAGATT--------TTATAGAAACATTTGATGTTTGATA
TC-ATAGTAGAAGGGAA---GAAAAAATTTTCC
>Rousettus_aegyptiacus
ATAAAACACAT-----CTTTATAT--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------AAAAATAGATTATTATTATTAAGTC--TTCTGTGTGTGTATATATATATA-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------TA--TGTT---GACAAAGGTTT
C---TGTTATTGTTTTTATTAAGGGATAATTGA-----------TATATTAGTTTCAACTGTACAACAT---AATGATTT
GATA-TTTGA----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------ATATGTTGCAAAATGATCACCACAATAAGTC----T
AGTTAAC--AT------CTACACATATTTCAAAA---------TTCTCGTGATGAG------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------AACTTTT-CAGATTTGTTATCTTAGTAACTTTCAAAATGTGCAGTACAGTTTTTTTA---ACTGTAGTCA
CCATCCTGTACATTACATCCCC-TGA-----------GACAAAGA---------------------TTTAATGTTTGACG
TC-GTAGTGTAAGGGAA---GGAAAAATTGTAC
>Condylura_cristata
GTAAAATACAT-----CCTCATAT--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------AAAATAAGCA--TTCAGTAAACTTTTT--GATAAA-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------TAG-T-TT---GACA-GAGCTC
T-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------TTATGGAAACATTTGACATTTGATG
TCAGTAGTGCAGGGGAGAAAAAAAAAATCTTTC
>Erinaceus_europaeus
GTAAGATACATTTTTCATATAAAC--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------ATAGGTTG---CTGAAAAGTCATTTCTGTAAACTTTTCTGGATATT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------TATTT-TT---GATAAGAATTT
T-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------GTTAAAAAGTGTTTATTAT-CGATG
TCATGAGTGTAGAGGAC-----AAAAGCTTTCC
>Homo_sapiens
ATAAAATATGC-----CTTAATAT--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------AAACAAAGATTG---TTACTAAGTA------GTAAACTTTTCTGGATATT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------TATTTGTT---GACAGAGATTT
T-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------AGATGGAAACATTTAATGTTTGACA
TCTG-AGTNNNNNNNNNNNNNNNNNNNNNNNNN



Bat158_LINE

>L1MA9_3END
----------------------------------------------------------------------------TAAA
AAAGTCAAACTCATAGAAGCAGAGAGTAGAATGGTGGTTGCCAGGGGCT-GGGGGGTGGGGG--AAATGG-GGAGATGTT
GGTCAAAGGGT-ACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGT-ACAGCATGGTGACTA-TAGT
TAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCAC--------------------
---------CACACAC---------------AAAAAAATGGTAACTATGT----------GAGGTG--ATGGATATGT--
-----TAATTAGCTTGATTGT-GGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATAT
ATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------
>Canis_familiaris
TTAAAACAGTACATCTCAAGGTCATT-TGCTGAAAATAGGAACA-GAAAAGT---AAAA--------ATTATT-------
-------AACTCATAGAAA-------TAGAAAAGTTGTTGCCATTGACT--GAGAATGGGGTG-AAATAG-GGAGAGGTT
TGTAAAATAAT-ACAAATTTTTAGCTAT--AAAATGAATAAGATCCGAGGACCTAATGT-ATAATGTGGTGAGTA-TATT
TGATAACACTATACTGTATAGTTGAAATTTGC-AAGATTGTACAACTTAAATGCTCTCTCTCTCATACACACACACACAC
ACACACACACACACACACACACACAAACCACCAAAAACATACACACACATACACAGAGAGGAGGTG--ATGGATGTGTGG
ATGTATAATCAACCAAATGGGAGAAAAT-----------------GTAAATCAAATCACTATGATGAACA--CTCAAGAT
CTTATAATTTTATATTTCACTTGTACCTCAGCAAAACTGACTTTTTTT-----AAAAGATTTTATTTATTTATTCATGAC
AGAGAGAGAGAGGCAGAGACACAGGCAGAGGGAGAGAGGGAGAGAAGTAGGCTCCTTGTAGGAGCCTGACGTGGGACTCG
ATCCGTGGTCTCCAGGATCACACCCCGGGCTGCAGGCGGCGCTAAACTGCTAGGCCACCAGTGCGGCCCAAAATTGACTT
TTTTAAAATTACATTTTTA---GTTCATTTCCTCATTTATTCAGT----ATATGTTAAATATTGACATGGGTCAGGTACA
ATTTGG
>Felis_catus
TTACTATAGTGCATATCAAGATCATTCTGCTGAAAATAGAAACA-GAAGGGT---AAAA--------ATTACT-------
-------AACTCATACAAACAGAGAGTAGAAAGATGTTTGCTAGGAGCT--GAGAGTGGGTG--ATGTAG----------
--TAAAAGGGT-ACAAATTTTTAGCTAT--AAGATGAATAAGATCTGAGGACCTAATGTAAAAACATGGTGAGTA-CAGT
TGATTACGCTATGTCGTATAGTTGAAATTTGC-AAGAGCATAGTATTTTAATGTTCT-----------------------
---------TACCGAAAAAGAATATGCACATACATACACCGCACACACAT----------GAGATGATATGGCTGTGTGA
ATGTGTAATTAACTAGATGGGAGAAAGTCCTTTCACAGTGTGTATGTATGTCGAATCACTATGATGAACA--ATGAATAT
CTTATAATTTTATATGTCAAGTATACCTCAGTGAAGTTGGGATTTTTTTT---AA---TCATACT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------TTTTTA---ATGCATTTTCTCACTTATTCACTGAG-GTTTTTTAAATATTTACATGGGTCAGGCACA
GTTTGG
>Manis_pentadactyla
TTATTGCAGTGTATGTCAAGGTCATTCTGCTGAAAAGAGAAACA-GAAAAAC---AGAAAATTAAACACCATT-------
-------AATTCATAAAAAGAGAGAGTAGGAAAGTGCTTGCCAGAGTAT--GAGAGTTGGAG--AAATAG-GGAGAAGTT
GGGAAAAGGG---CAAACACTCATCTGT--AAGATGAATAAGGTCTGAGGATCTAATGT-ATAACATGGTGACTA-TAAT
TGATAACACTGTATTGTATAGTTAAAATTTTCC--GAGAGTACAATTTAAATTTCCT-----------------------
---------TAC--------------------AAAAAA---AAAATGTGT----------GAGATG--AT--ATGTGG-A
TGTCTTAATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNN---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------NNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNN
>Sus_scrofa
TTATTGAAGTGCATATCAAGGTCAATCTGCTAAAAATAGAAACA-GAAGAGT---AAAA--------ATTACT-------
-------AACTTATAGAAACAGAAAGTAGAAAAGGGCTTTCCAGGGGCT--GAAGGTAAGGG--AAATAACAGAGAGGTG
GGTAAAAGGGT-ACAGACTTTCAACTGT--AAGGTGAATATAGTCTGAGGATCTAATGT-AAAATGAAGTGGCTATTAGT
TGATAAAATTGTATTATTTAGTTGAAATTTGCTAAGAAAGTAGATCTTAAGTATTCT-----------------------
---------CACACACGC--------------AAAATC---TAAGTATGT----------GAAATG--ATGGAGATGT--
-----CAATTAACCAGATGGGAGGAAATCCTTTCACAAAGTAAACGTATATTAAATCACTAGGATGAACACTCTAAATAT
CTTACAATTT--TGCATTAGTTGCATGCCAATGAAGCTGAAATTTTTG-----AAAAATTACAT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------GCTTTT---ATTCTTTTCCACATTTTTTCAAT----ATTTATTAA-TATTTTCATGAGTCAGGCATA
GTACAG
>Bos_taurus
GCATTGCACTGCATATCAAGGTCATTATGCTTAAAATAGAAACA-GAAGAGT---AAAA--------ATTACT-------
-------CAATTTTAAAAGCAGAAAGGGCAAAAGCGGTTGCCAGGAGCT--GAAGGTAGGAG--AAATAC-AGAGTGGCT
GGTTAAAGTCTCGGAAATTTTCAGCTGT--AAGATGAATTAACTCTGAGGAGCTCATGC--AAAGATGGTGGGTATCAAT
TGATCCCATTATATTGTATAG-TGAAATGTAC-AAGAGAA-AAGTCTTAAATATTAT-----------------------
---------CACACAC----------------AAAAGA---CAATTATAT----------GAAGTG--ACAGATATGT--
-----TAATTAACTAGACAGTAGGCAATTGTTTCACAATGTGCGGATAGATC-----ACTAGGACAAACA--CTAAATAT
CTTACAATTT--TGCATCAGTTACATATCAGTAAAACTGAAATTTTA------AAAAATCACCA----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------TCTTTC---ATTCTTTTCCACATTTTTTTAGTGACTATTTAT----TGTTTTAATGGGTCAGGCGTG
GCTCAG
>Equus_caballus
TTATTGTAGGGTGTATCGAGGTCATTCTGCTGAAAATAGACACA-AAAAAGA---AAAA--------ATTATT-------
-------GACTCATAGAAAC--AAAGTAGAAAATTGGTTGCCAAGGGTT--GAAGGTGGGGG--AAATAA-GGAGAGGTT
GGTAAAAGGAT-CCAAACTTTCCGCTGT--AAGATGAATAAGATCTGAGAATCTAATGT-CAAACATGGTGACTA-TAGT
TCATAACACTGTTTCGTATAAGTGAAATTTTCTAGGAGAGTAAAACTTAAATGTTCT-----------------------
---------CACCCCC----TACTTCCCCCCAAAATGA---TATTTATGT----------GAGATG--ATGGATGTGT--
-----TAATGAAATAGATGGG-GAAAATCCTTTCACAATGTATATGTATATCAAATCACCACAATCAGCACACTAAATAT
CCTACAATTT--TCTGTCAACTATACCTCAATAAAGCTGAAATTTTTAA----AAAAATCATGC----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------TCTTTC---ATTTACTTCCTCATTTATTCAGTGAATATTTAATAAATACTTACATGAGTCAGGTGTA
GTTCAG
>Ceratotherium_simum
TTATTGCAGAGCATATCCAAGTCATTCTGCTGAAAATAGAAACACGAAAAGT---AAAA--------ATTATT-------
-------AACTCA-AAAAACAGAGAGTAGAAAAGGGGTTGCCAGGAGCTGGGGGGGTGAGGG--CAATAG-GGAGAGGTT
GGTAAAAGGGT-ACAAACTTTCAGCTAT--AAGATGGATAAGGTCTGAGGATCTGATGT-AAATCATGGTGACTA-TAGT
TGATAACACTGTATTGTATAAGTGAAATTTGCT--GAGAGTAGAACTTAAATGTTCT-----------------------
---------CATTCCC-----------CCCAAAAAAGA---TAAATATGT----------GTGATG--ATTGATGTGC--
-----CAGTTAACTAGATGGGGGGAATCCTTTTCACAATGTATGCATATATCAAATCACTATGATGAACACTCCAAATAT
CTTACAATTTTATATATCAATTATACATCAATAAAGCTGAAATTTAAA-----AAAAACCATAT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------TCTTTC---ATTCATTTCTTCATTTATTCAGTCAGTATTTATTAAGTATTTTCATGAGTCAGGCATA
GGTCAG
>Myotis_myotis
TTATTGCAGTTCATAGTAAGGTAATTCTGCTGAAAATAGAAACC-AAAGAAT---AAAA--------ATTA---------
--------ACATGTAGAAACTGAGAGTAGAAA----GTGGCCAGGGGCT--GCAGGTGGGG---AAATAG-GAAGAGGTT
AGTAAATGGGT-GCAAAGTTTCAGGTAT-----------AAGGTCTGATGATCTAAGGT-GAAGCATGATGACTA-TAAT
TGATAATG--GTATTGGATAAGTGAAATTTTCTAAGGGGGTAGACCTTAATTGTTCT-----------------------
---------CACACAC-------------ACAAAAAGC---TAATTACAT----------GAGGTT--ATGGAAGTGT--
-----TAATT------ATGGGAGGAAATCTTTTCAAAATATGGACATGTATCAAAACCCTAC----------------AT
CTTACCATTTTACATGTCAATTTTATCTTAAT-AAGCTGACATTTTA------AAAAGTTAC------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------TCTTCC---ATTAATTTTCTCATTGATTCATAGAGTATTATTTTANNNNNNNNNNNNNNNNNNNNNN
NNNNNN
>Rousettus_aegyptiacus
GT-TTACCGTGTATATCAAGGTCATTCTCTTGAAAATAGAAACT-GAAGAAT---AAAA--------ATTATT-------
-------GATACAAAAAAACAGAGAACAGAAAAATGGTTGCCAGGGGCTGGGGAATTGGGAAGTAGGGAG-GGAGAGGTT
GGTAAAAGGGT-ACAAACTTTTAGTTAT--AA-ATAAATAAGGTCTGA-AATATGAC-------TACAGTTGATA-AAAT
TAATAACACTGTATTGAATAATTAAAATTTCCTAAGAGAGTAGAACTT--ATATTCT-----------------------
---------GACCAATAAAT-----------AAATAAA---TAAATACAT----------GAGGTG--ATGGATGTGT--
-----TAATTAACTCAATGGGAGGAAATCTTTCCACAATGTATACATGTATCAAAACACTATGATGAACA--TTAAATAG
CTTACCATTTTATGTGTCGATTTTGCCTCGAT-AAGCTGAAATTAA-------AAAAACAAAGTCAC-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------GCTTCC---ATTCATTTTCTGATTTATTCAGTGAGTATTTGT----TGTCTACATGTGTCAGGCATA
GTTCAG
>Condylura_cristata
TTATTATAGTACATATCAAAGTCACTCTGT--------GAAAAC-AAATATT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------AGAAA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------TTATTC---ATT------------TATTCAAC----AAATATTAAGTACTTATATGCATCAGGCATC
TTTTTT
>Uropsilus_gracilis
TTATTACAGTGCATATCAAGGTCATTCTGCTGAAAATAGAAATA-TAATATT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------AGA------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------TTATTC---ATTCATTTTCTCATTTATTCACTAAATATTTATTAGGTG----GATAAGAAAGGCATA
GTTGGT
>Homo_sapiens
TAATTGCAGTGCATATCAAGCTCATTCTGCTGAAAATAGAAACA-AAACATC----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------AACAATGATTATAC-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------TCTTTT---GTTCATTTCCTCATTTATTAAATAAGTGTTTATTGAGTATTTACATG-----------
GTCCAG



Bat159_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
-----------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATG
TTT-------------------------------------------------TGATATACGTATACATTGTGAAATG---
---ATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTACCATTTTTTTGTG--------TGTGGTGAG
AACACTTAAGATCTACTCT-------------------------------------------------------------
---------------------------------------------------
>Canis_familiaris
AGTCAAAAAT-GAAACTGGTTAATGTCCT-ATAGGGCAATAAAACAGTAAGTTT---TCAGTTATTTC------TTTT--
-TCTGCTAGTTATATGTCAATTGTATAAATGTATGCTT-ATGCAT-AATGTTGCATAAGTTTAAAATGTAAAACATAGTG
ACTTGAGGTATATATATATATATATATATATATATATATATATATAGCGAAATGATATATGTTTATATTGTGAAATG---
---ATCACCATAATAAGTTTGGTTAAT--ATCCATCACCTCACATA------ATTTTTTTTCT--------TATGATGAA
AATTTTTAA-------------TGAGTTATTATTTCT---ATCAGGCCATAAAACAAAACAAAACAAAACAAAACCCTCT
ATTTCTACAGGATGAAAA-TGTAC------------------TTCAAGTCT
>Felis_catus
AGTTAGAAAT-AAAACTGGTTAATGTCCT-ATAGGGCAATAAAACAGTAAACTT---TCAGTTATTGT------CTCT--
-CTCTCTCTTTTTTTGCTAGTTTTATTGATATACAGTTGACATAT-AGCATTGTATAAGTTTAAAGTATATAACATAATC
ATT-------------------------------------------------TGATGGATGGATATATTATGAAATG---
---ATCACCACAGT--GTTTGGTTAAT--AGCCATCACCTCACAGAGTTATGATTTTTTTTCT--------TATGATGAC
AATTTTTAA-------------AGAGTTAATA-TTCT---ACCAGGCCAAAAA-----------------ACAAATT-GG
ATTTCTACAAGATCAAAA-TGTACAAGTTACTGTGT---AACTTTTAGTCT
>Phataginus_tricuspis
AGTTGGAAGC-AAAACTAGTTAATGTCCT-ATAGGGCAATGAAACAGTCTGCTT---GGAGTTACTTTTTCAAATTCT--
-TTTTCTAGTT---------TTATTGAGATGTA-ATTG-ACATAT-AACATTGCATAAGTTGAAAATATACAATATAAAG
ATT-------------------------------------------------CGACATATGTATATATTGCAAAATG---
---ATCTCCACAATAA-----GTTAAC--AT-CATCATCTCACATAGTTACAATTCTTCTTCTT-------TGTGATGAG
AACTTTTAA-------------TGACTTACTGCTTCT---ACCAGAC---AAA-----------------AACACTT-AT
ATTTCTGGAGGATTAAAA-TGTACAAGTTCGCGTGC---AACTTTTCATCT
>Sus_scrofa
AGTTCGAAAC-AGAACTGATTAATGTCCT-ATAAGGCAATAAAATAGTAGGCTT---TGAGTTATTAT------TTTT--
--------------TTCCAGTTTAGTTGAAATATAATTGACATGT-AACATTATATAAGTTCAATGTGTACAACATAATG
ATT-------------------------------------------------TTATATATG-ATATAATGTGATATATGA
TATAATGTGATAGTAAATTTAGTTAAC--ATCCATCACCTCATATACTTACAATT-TTTTCCT--------TTTGATGAC
AACTTTTAA-------------TGAGTTATTGTTTCT---ACTAG-----AAA-----------------AAAATTCAGT
TTTTCTAGAGGGTGAAAA-TCTACAAG---------------TTTTAGCCT
>Tursiops_truncatus
AGTTAGAAGC-AAAACTGGTTAATGTCCT-ATAGGGCAATAAAACAGTAAGCTT---TGAGTTATTGT------TTCT--
---------TTTTCTCCCAGTTTTATTGAAATATAATTGATATAT-AACATTGCATAAGTTCCAGGTGTACAACATAATG
ATT-------------------------------------------------TGATATATG-ATATATTTTGA-ATG---
---ATTAGCACAGTACGTTTAGTTAAC--ATCCATCACCTCACATACTTTCAATTTTTTTCCCT-------TGTGATGAG
AACTTTTAA-------------TGAGTTATTTTTTCT---ACCAGACCAAAAA-----------------AAAATTTTAT
ATTTCTACAGGGTGAAAA-TCACCAAGTTAGCATGT---AACTTTTACCCT
>Equus_caballus
AGTTAGAGGC--AAACTTGTTAATGTCCT-ATAGGGCAATAAGACAGTAAGCTT---TGAGTTATTAT------TTCT--
--------CTTTTTTTCTAGTTTTATTGAGATATAGTTGACATAT----GTCATATAAGTTTAAGGTGTACTACGTAATG
ACT-------------------------------------------------TGATATATGTAGATACTGTGAAATG---
---ATTACCACGATAAGTTTAATTAAC--TTCCATCACTTTGCATAGTTACAATTTTTTCCCCT-------TGTGATAAG
AACTTTTAA-------------TGAGTTACTGTTTCT---ACCAGGC--AAAA-----------------AACATTT-GT
ATTTCTACAGGATGAAAA-TCTACAAGTGAACACGT---AACTTTTAGTCT
>Ceratotherium_simum
AGTTAGAAAC-AAAACTGGTTAATGTCCT-ATAGGGCAATAAGACAGTAAGCTT---TAAGTTATTAT------TTCT--
--------CTTTTTTTCTAGTTTTATTGGGATATAATTGACATAT-AACATCATATAAGTTTAAGGTGTATTATGTAATG
ACT-------------------------------------------------TGATATATGTAGATACTGTGAAATG---
---ATTACCACAATAAGTTTAGTTAAC--ATCCATCACCTCACGTAGTTACAATTTTTTTTCCT-------TATAATGAG
AACTTTTAA-------------TGAGTTATTGTTTCT---ACCGGAC--AAAA-----------------AACATTT-GT
ATTTCTACAGGATGAAAA-TCTACAAGTGCGCATGT---AACTCTTAGTCT
>Myotis_myotis
AGCGGGAAAC-AAAACTGGTTAATGTCCTAATAGGGCTATAAGACAGTAAGCTT---TGAGTTATTGC------TTCC--
---------TTTCTTTCTAGTTTTA------TATAATTGACATAT-AACATCACATAAGTTTAAGGTGCACAACATAATG
ATT-------------------------------------------------TAATATATGTATGTATTAGGAAGTG---
---ATCACTGCAATAGATTTAGTTAGC--ATCCAGCATCTCACATAGTTACAATTTTTTTCCT--------TTTGACAAG
AACTTTTAA-------------TGAATTGTTGTTTCA---ACTGGAC---AAA-----------------AGCATTT-GT
ATTTCTATAGGATTAAAACTCTATAAGTGAGCATGT---AACTTTTAGTCT
>Rousettus_aegyptiacus
AGTTAGAAAC-AAAACCGGTTAATGTCCT-ATAGGGCAATAAGACAGTAAGTTT---TGAGTTACTGT------TTCT--
------TTTTTTTTTTCTGGTTTCATTGAGTTATAATTGACATAT-AACATCG-ATAAGTTTAAGCTGTAAAAGATAATG
ATT------------------------------------------------------TATGTATATATTGGGAAATG---
---ATTACCACAATAAGTTTAGCTAAT--ATTCATCACCCTACATGGTTACATTTTTTTTAAATAAGAGTCTTTAATAAG
AGTCTTTAA-------------TTATTTATTGTTTCT---ACTAAAC--AAAA-----------------AACATTT-GT
ACTTCTACAGGATGAAAA-TCTACAAGTGTTCATGT---AACTTTTAGTCT
>Condylura_cristata
AGTTATAAATAAAAACTAGTAAATGTCCA-TTAGGACAATAAAACAG--AG--T--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------AAAATTGATGTTTCT---ATTAGACAAAAAA-----------------AAAAT---GT
ATTTCTTCGAGATGAACA-TCTACAAGTTAGCTTCT---GGTATTTAGTTT
>Uropsilus_gracilis
AACTACGAAC-AAAACTGGTTCATGTCCT-ATAGGGAAGTAGAATAGTAAGCTT--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------TGAGTTGATGCTTCT---ATTGGACAAAAGA-----------------AAAATC----
ATTTTTACAGGATGAAAA-TATACAAGTTATCTTGTATAAGTTTTTGGCCT
>Homo_sapiens
AAC-ATAAAT-AAGACTGATTAATGTCCT-GTAGAGCCATAAAACAGTTAGCAC--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------TGAGTTATTGTTTCT---ACTAGAC---AAA-----------------AACATTT-CT
ATATCTACAGAATGAAAA-TCTATAAGTTAACATGT---AACTTTTAGTCT



Bat165_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
------ATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCAC
CACACACAAAAAAA----TGGTAACTATGTGAGGTGA--TGGATATGTTAA-TTA---GCTTGA-TTGTGGTAATCATTT
CACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAAT--TTTTATTTGTCAATTATACCTCAA
TAAAGCTGGAAAAA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
>Canis_familiaris
CCTAGTACATCTAC----AAAAGAATATAGTAAATTACTT----AGTAAT-AAT-----------------CTGGGACTA
TAG----------------CCAATAATAATGTATCATATACTTGAAAGTTGCTGAGA--CTAAATCTTAAAAGTTTTTAT
TACAATAGAAAAAA---CTTGTAACTATGTGTGATAA--TAG--ATGTTAA-CTATTAACTAGACTTGTAGCGATCATTT
CATGGT----ACAAATAGTCAATCATTATGTTGTACATCTCAAC----TAATGT-----TATTTATCAATTATATCTCAA
------AAAGGATTCTTTTTA---AAGATTTTATTTATTTATTCATAGATACATAGAGAGAGAGGCAGAGACACAGGTAG
AGGGAGAAGCAGGCTCCATGCAGGAAGCCCGATGTGGGACTCGATCCCGGGTCTCCATGATCACACCCCAGGCTGCAGGC
GGCGCCAAACCACTGCACCACCAGGGCTGCCCTCAAAAAGGAAATTTTTTAGGGACTCCGGAGTGGCTCAGTGGTTGAGC
GTCTGCCTTTGGCTCAGAGCGTGATCCTGGAGTCCCGGAATCAAGTTCTGCATCAGGCTCCCCGCACGGAGCCTGCTTCT
CCATCTGCCTGTGTCTCTCATAAATAAATAAATAAAATCTTTAAAAATATTTTTTGAAGATTAAA----CTG---ATAAT
TATTATAT--TGA-GGTCATTCTCTGAACTTATTCTTATATTTT--AGTATAAACCCTAAAGTGTAAGT-----------
---------------CTCAAGCAT
>Felis_catus
CCTAGTACATCTACATTCAAAAGAATA-----AATTACTTAGTAAGTGAT-AATT---AAGATTAACCTATCTGTGATTA
TAG----------------CTAATAATAATGTATCATACATCTGAAAGCCGCCGAGA--GCACATCTTAAAGGTTTTCAT
CACAAAAGGGAAAACAATTTGTAACTATGTGTGATAA--TGA--AAGTTAA-CTA--GACTTG--TTGTAGTGATCATTT
AGCAATATATATAAATATGGA------ATGTTGTATACTTGAAC----TAATGT-----TATATGTCAATTATATCTCAA
---------AAACATTTTTTA---AAGAT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------TAAA----CTG---ATAGC
TATGATATTCTGA-GGCCATTCTCTGAACTTAATCTTTTTACTT-GAGTATAAATCCTAAAGTGTAAGT-----------
---------------CTGACGCAT
>Manis_pentadactyla
CCTAGTATACCTACAATAAAAAGAATAC--TAAATTTCTCAGTAAGTGATAAATT---AAGGTTAAACTATCTGTGACTA
CAG----------------TTAATAATAATGTGT-----ATTTGAAAGCTGTTGAGAAAGTAGATTTCAAAAGTTCACAT
CACAAGGGAAAAAA--------AAC--TATGTGATGA--CAG--TAGTTAACCTA--AACTTG--------TAATCATTT
TGCCATGTATACAAATACTGAATCATTATGTTGTATACAGGAGAAC--TAGTAT---GTTATGTGTCAGTTACATCTCAG
----TAAAAAA--CTTTTTAA---AAGGT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------TAAACTACCTG---GTAAC
TACAATATCCTAA-ATTCAATCACAGAACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----------
---------------NNNNNNNNN
>Sus_scrofa
CCTAGTACATCTACAATCAAAAGAATGCAGTAAATTATTT----TGTGAT-AATT---AAGACTAAACTATCTGTGACTG
TAG----------------CTGAGAATACTGTATTGTATATTTGAAAGTTACTGAGAGAGTAGATCTTAAAAGTTCTCAC
CACAAGGAAAAAAA----CAGTAAC--TGTGAGACGG--TGG--ATGTTAA-CTA--AACTTG--TTATGAGGACCATTT
CACAACAGACACATAGAACAAATC---ATGCTGGACACCCGAAAC---TAATGT------------CAATTACTTCTCAA
TTTTAAAACAA------TTTA---AAGAT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------TAAACTATCCA---ATAAC
T--------CTGA-GCTTATTCTCCAAA----------------------------------------------------
--------------------GCAA
>Tursiops_truncatus
CCTGGTACATCTACAATCAAAAGAATATAGTAAATTACTC----TGTGAT-AATT---AAGATTAAACTATCTGTGACTA
CAG-------------------TTAATACTGTATTGTATATTTGAAAGTTGCTAAGAGAGTAGATCTTAAAAGTTCTCAT
CACAAGAAAAAAA-----TTATAGC--TGTATGATGA--TGG--ATGTTAA-CTA--GAC-----TTGTTATGATCATTT
TGCAATATACACAAATACCGAATCGCTATGTTGCACACCTGAAAC-----ATGT-----TATATGTCAATTATAGCTCAA
CTTTTAAAAAA-----TTTTT---AAAAT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------TAAACTATCTT---ATAAC
TACAATATTCTAA-GGTCATTCTCTCAA----------------------TAAATCCTAAAGTATAAGT-----------
---------------CTGANNNNN
>Equus_caballus
CCTACTACATCTACAATCAAAAGAACATAGCCAATTACTTAGTAAGTGAT-AATT---AAGATTAAACTACCTGTGAC--
-----------------------------TGTATTGCATATTTGAAGGTTGCTAAGACAGTAGATGTTAAAAGTTCTCAT
CACAAGGGGAAAAA-AGTTTGTAAC--TGTGTGATAA--TGC--ATGTTAA-CTA--GACTTC--TTGTGGTGATCATTT
CACAATATATACAAATATCGAATC---ATATTGTTTACCTGAAGC---TAATAT----------GTCAATTATATCCCAA
----TAAAAAA---TTCTTTT---AAGAT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------TAAACTATCTG---CTAAC
TACAATTTACTGA-AGTCATTCTCCAAATTTAACCTTTTAAGTT-TAGTATTAATCCTAAAGTGTAAGT-----------
---------------TTGAAGCAT
>Ceratotherium_simum
CCTAGTATATCTACAATCAAAAGAACATAGTCAATTACTTAGCAAGTGAT-AATT---AAGATTAAACTATCTGTAACTA
TAG----------------GTAATAACACTGTATTGCATATTTGCAAGTTGTTAACACCATAGATCTTAAAAGTTCTCAT
CACAAGGGAAAAAA-AATTTGTAAC--TGTGTGATGA--TGG--ATGTTAA-CTA--GACTTG--TTGTGGTGATCATTT
CACAATATATACAAATATCAAATC---ATGCTGTATACCTGAAAC---TAATATAAGGTTATAAGTCAATTATATCCCAA
----TAAAAAAAATTTTTATT---AAGAT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------AAAAACTATCTG---ATAAC
TACAATTTATTGA-AGTTGTTCTCCAAACTTAATCTATTACTTG--AGTGTGAATACTAACGTGTAAGT-----------
---------------CTGAAGCAT
>Myotis_myotis
TCTACTACATCTGC-ATCAAAGGAGTA-----AATTACTT----CATGAA-AATA---AAGATTAAAGTATCTGTGACTA
TAC----------------TTAATAATACTGTATTGTATATTTGAAGGTTGCTAAGA--GTACATCTTAA--GTTCTAAT
AACAAGGGGAAAAA----------CTAAGAAAAACAA-------ATGTCAA-TTA--GAC-----TAACGGTGATCATTT
CACAATATATACAAATATCGAATTATCATG-TATACACCTGAAAC---TAATATAGTGTCATATGTCAGTTACATTTCAA
---TTAAAAAAAAATTT---------AAT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------TAAACTTTCTG---TTAAC
------ATTTTGA-GGTCATTCTCCAAACTTAATATTTTATTTT--AGTATAA-TCCTAAAGTATAAAT-----------
---------------ATGAAGCAT
>Rousettus_aegyptiacus
CCTAGTATATTCAT-ATCAGAAGAATACAGTAAATTACTA----AGTGAT-AATT---AAGATTAAACCATCTGTGGCTA
CAG-------------------TCAATACTATACCGTTTATCTGAAAGTTACTAAGAGAATAAATCTTAAATGGTTTTGC
AATAAGTGGGAAAA-------------AATGAACTGAATTGG--ATGGTAA-CTA--GAC-----TTACGGTGATCATTT
CAGAATATGTACAAACACTGAATC---ATATTGTACACCTGAAACTAATACAGGGTTGTTATATGTTAATTATGGCTCAT
----TAAAAAAAAAATTTTTT---AAGAT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------TAAA--GTCT-----TAAT
------AT-CTAA-GGTCATTCTCTAAACTTGATATTTTATTTA-GTATATAAATCCTAAAGTGTAAAG-----------
---------------ATGAAACAT
>Condylura_cristata
CTTAGTACATTTACAATCAAAAAAATAT----------------AGTGAT-TATT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------AACAT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------TAAACTATCTG---ATGAC
TATAAAACTGTAAATATTATTCTTTGAATTTAACCTT-TACTTT--AGTATAAATCCTAAAATATAAGTGA---------
---------------GTGAAGCAC
>Scalopus_aquaticus
CCTAGTACCTTTACAATCAAAAGACT-T----------------ATTGAT-TATT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------AAGAT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------TAAACTATCTG---TTAAC
TACAAAGCTGTAAAGATCATTCTTTGAATTTAACATTTTACTTT--AGTATAAATCCTAAAGTGTAAATGTAATGTGTAA
TCCGAAAATCTAAGTCTGAAGCAT
>Homo_sapiens
CCTA--ACATCTATAATCAAAAGAATATAGTAAGTTACTT----AGTGAT-GTTT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------AAGAT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------TAAACTATCTG---ATAAC
TACAATATTCTGA-GATTATTCTCTAAACTTAATCTTTTACTTTAGTATATAAATCCTAAAGTATAAGT-----------
---------------CTGAAGCAT



Bat166_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------GGGAAATGGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAG
ATCTAATGTACAGCATGGT-------GACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGAT
CTTAAGTGTTCTCACCACACA----CAAAAAAATG-------GTAAC--TA--------------------------TGT
GAGG-TGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTT-GTA
CACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGG------AAAAA-----------------
--------------------------------------------------------------------------------
---
>Canis_familiaris
TAAAGCTTTATTCA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------TCATTCTTC---CAAATGGC-TAATGG--CAAACTGG-AAAGAGTT---AAAAAT
GTGATTGAAT---------------AAAGATGATCAAAAGGTGCAAACTTCCAGCTGT--AAGAT----AATCACAGGGG
GTGTAATGCACAACGGGAT-------GACTAGAGGTAACACTACTGCATGCTATGTTTGAAAGTTACTAAGAGAATAAGT
CCTAAAAGTTTTCATCATTAG----AAAAAAATATTTTGGGGGTAACTATGAGTTGCCTCATATGAGTTCAATCCCCTAT
GAAA-TGATGG--ATGTTGACTAAACTTA-TGTGGTAACCATTTTACAA-ATAT--ATATGCCACGTGTTTATGCC-ATA
CAC-TTAAATTTA-TGTAGTACTGTATGTCAATTTTATCATAATAAAACTGA------AAAAAAATTCCAAAGTAAAAAA
--------------GAAAATATGATTGAAT---TAAAAGCTCTAATAAATGTCAGCTTATTGCTCCAATAATTGCTATTG
CTT
>Felis_catus
TAAGTCTTTCTCCA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------TCATTCTCT---CAAATGGC-TAATGG--CAGACTGG-AAAGAGTT---AAAAAT
GTGATTGAAT---------------AAAGATGGTCAGAAGGTCCAAACTTCCAGTTGT--AAGATAAATAATCACAGGGG
ATGTAATGCACAGCATGAT-------GACTATAGTTAACACTTCTGTATACAATATTTGAAAGTTGCT------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------GTA
CCACTTAATCTTA-TACAGTGCTGTATGTCAATTATATCTCAATAAAACTA-------AAAACAATTTTAAATTAAAAAG
AAAATGAAAGA---CAACATATGATTGAAT---CCGAAGCTTCGATCAATGTCGCCTTAGTGCTCCAACAATTGCTATTG
CTA
>Manis_pentadactyla
TAAA----TATTCA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------CCATTCTTT---CAAATGGC-TAATGA--CAGACTGC-AAAGAGTT---AAAAAT
GTGATTGAAT---------------AAAGGTGGTCAAAAAGTACAA-TTTATAGTTAT--AAGATAAAAAATTACTGGGG
GTATAATACACAACATGATGACTGCAGACTACAGTTAACACTTC-ATATGGTATATTTGAAAGTTGCTAAAAGAGTAAAT
CTTAAAAGTTTTCACAAGGAA----AACAAAAAAATTTTT--GTAAC--TA--------------------------TGT
GAGATTAATCA--ATGTGAACTAAATT------GGTGATCATTTTGCATTATCT--GTATATCAAGTCA---TGCT-GTA
TACTTTAAATTTATTATAACACTGTATGTCAATTATACCTCATTAAACTTGA------AAATTAAAAAAGGAA-------
--------------AATAATATAATTGAAT---CAGAAGCTCTAATAAATGTCAGCTTATTGTCTCAACAATTGCTATTG
CTG
>Sus_scrofa
TGAAGTTTTAATCACTGTGGCTTTTTTTTTTTTTTTTTTTCTTTTTAGGGTCAGACTTGCAGCATATGGAGGTTCCCAGG
CTAGGGGTCAAATCGGAACTACAGCTGCCAGCCTACACCACAAGCCACAGCAACGCCAGATCTGAGCCAAGTCTGTGACC
TACACCACATCTTCTTAACCCACTGAGAGAGGCCAGGGATCGAACCCACAACTTCATGGTTCCTAGTCGGATTCTTTTCC
ACTGCGCCATGGTGGGAACTCCGAGTCATTGCTTTTTCAAATGGC-TAAAAG--CAGATTGG-AAAGAGTT---TAAAAT
GGGATTGAAT---------------GAAAATGGTCAAAATACACAAACTTCCAGTTAT--AAGATAAATAATTATTGGGG
AT-TAATGCACAACCTGAT-------GACTGTAGTTAAC--TGCTATATGGTACATTTGAAAGTTGCGAAGGGAATAAAT
TCAAAAGTTTCTCATCACAAG----AAAAAAAGTTTTT----ATAAC------------------------------TAT
GAGG-TAATAG--ATGTTAACTGAGCTTATTGTGTTAATCATTTTGCAATATAT--GTAGGTCAA-TCATTATGTTGGTA
CACCTTAAATTTA-TACAGTGCTGTATGTTAATTATA--ACAATGAAACTGA------AAAATAAAAATAATAAAAAGAT
ATAAAAAATTT---AAAAACATGATCAATT---TGGAAGCTCTAATAATTGTCAGCTTAGGGCTCCAATAATTGCTATTG
CTA
>Bos_taurus
TGAATCTTTAATCA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------TCATTTTTT---CAGATGGC-TAATAG-----ACTGGAAAAGAGTT---TAAAAT
GTGAGTGAAT---------------GAAGGTGGTCAATAGATACAACCTTTCAGTTAT--AAGATAAATAATTACTGGAG
ATGTAAGGAACAACATAAT-------GACTACAGTTAACACTGCTGTATAATATATTTGAAAGTTGCTAAAGGAATAAAT
CCTAAAATTTCTCATCACAAG----GAAAAAAAATTTT----ATAAC--TA--------------------------TAG
-----------------TCATTGAACTTACTGT--TAATAATTTTTCAGTGTAT--GTAGGTCAAGTTATTATGCT-GTG
CACCTTAAATTTA-TAGAGTGCTGTATGTCAGTTATATCTCAATAAAACTGA------AAAAGAAAACTAGTAAAAAGAA
ATAAAAATTTT---AAAAATATGATGGATT---CAGAAGTTCTAATGAATGTCAGCTTACAGCTCAAACAATTGCTATTG
CTA
>Equus_caballus
TAAATCTTGATTCA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------TCATTTCTT---CAAATGGC-TAATGG--CGGACTGG-AAAGAGTT---AAAAAT
GTGATGGAAT---------------GAGGGTGTTTAAAACGTACAAACTTCCAGTTAT--AAGATAAATAAATACCGG-G
TTATAATGCACAACACGAT-------GCCCATAGTTGACATTGCTGTATG-TATATTTGAAAGTTGGTAACAAAGTAAAT
CCTAAAAGTTCCCATTACAAG---GGAAAAAAAATTTTTT--GTAAC--TA--------------------------TAT
GAGG-TGATGG--ATGTTCACTAGATTTATTGTGGTGATCATTTTGCAATATAT--GTA-GTCAAATAA-----------
----------------------------------------------------------AAAAGAAAAAAGAAAAATAAAT
AAAAGGA-------AAAAACATGATTGAAT---CAGGAGCTCTAATAAATGTTAGCTTATTGCTGCAACAATTACTATTG
CCA
>Ceratotherium_simum
TAAAGCTTTATTCA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------TCATTCCCT---CAAATGGC-TAATTT--CAGACTGG-AAAGAGTT---AAAAAT
GTGATTGCAT---------------GAGGGGGGTCAAAAGATACAAAATTCCAGTTAT--AAGATAAATAATTAATGG-G
TCGTAATGCATAACATGAC-------GACTACACTTCACATTGCTGTAAGGTATGT------------AAGAGATTAAAT
CTTGAAAGATCCCATCACAAGAGGAAAAAAAAAATTTTTTTTGTAAC--TA--------------------------TAT
GAGG-TGATGG--ATATTAACTAAGCTTATTGTGGTAATCATTTTGCAATATAC--GTAAGTCAAGTGA-----------
----------------------------------------------------------AAAATAAAAAAAAGAAAAAAGA
AAAAAAAA------GAAAATATGATTGAAT---CAGAAGCTCTAATAAATGTTAGCTTATTGCTCCAACAATTACTATTG
CTA
>Myotis_myotis
TA-TGCTTTCTTCC------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------TTATTCTTT---CCAATGGCTAAATGG--CAGACTGG-AAAGAGTT---AAAAAT
ATGGT----C---------------TAAGGTGGGCAGAAGGTACAAATTTCCAGTTAT--AAGATAAATAATTACTGGGG
ATGGAATGTGTAATATGAT-------GACTACAGTTAACATTGCTGTACGGTATGTTTGATAGTTGCT--CAGAGTAAAT
TCTAGAAGTACTCATCACAAG----GAAAAACATTTTATTTTATAAG--CA--------------------------CAT
AAGG-TAATGG--ATGTTAACTAAACCTACTGTGGTGATCA-TTTGTAATATAT--GTACATCAAGTCATCACGCT-GTA
CACCCTCACTTACATATGGTACTGTGTGTCAATTATATCTCGATAAAACTGG------AAAATAAACCAAAAAAAGGAGA
AA------------AAATACATGATTGAAT---CAGAAACTCGAATAAGCGTCAACTTATTGTTCCAACCATTGCTATTG
CTG
>Rousettus_aegyptiacus
TAAAACTTTATTCA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------TCATTCTTT---CAAATGGCTTAATGG--CAGACCAG-AAAGAGTT---AAAAAT
GTGATTGAAT---------------GAAGGTGGTCAAAAGGTACAAACTTCCAATTAT--AAGATAAATAATTATTAGGG
ATGTGATGTGAAAAATGGT-------GCCTATAGCTACCACTGCTGTA-GGTATGTTTGAAAGTTGCTGATAGAGTAAAT
CCTAGAAGTTCTCATAAGAAG----AAAAAAAAAGTTTTTTTGTAACTATA--------------------------TAT
GAGG-TTATGG--ATGTTAACTAAACTTAATGAGGTAATCATTTTGTGATATAT--GTATGTCAAGTTATCATGCT-GTA
CACCTTCAACTTA-TACAGTGCTATATGGCAATTATATCTCAATAAAACTAACCAAATAAACAAAAATAAACAAACAAAC
AAAAGAAACAG---AAAAACATGATTAAAT---CAGAAGCTCTAATTTATGT--------TGCTCCAACATTTGCTGTCG
CTA
>Condylura_cristata
TAAG------TTTA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------ACCTTTTTTAAAAAAATGGC-TAATGG--CAGACATT-AAAGAGTT---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------AAAAAAATAACTGAGT---CAGAAACTCTGCCAAATGTTATCTTATGGCTCCAACATTTACTACTG
CTG
>Sorex_araneus
CATAGTTTTACTTG------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------CCATATTTT-TCCAGTTGG--TTACAGTGCAGACAGC-AAGGAGTT---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------AAAAATTAGAATTCTT---TAGAAGCT-----------------GTGGCACCAATAATTGCTGTTG
TTA
>Homo_sapiens
TAATGCTTTGCTTA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------TCATTCTTT---CAAATGGC-TAATGG--CTAACTAG-AAAGAGTT---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------AAAAATATGATTGAAT---CAGAAGCTCTAATAAATGTTAGCTGATTTCTCCAACAGTTACTAAAG
CTA



Bat171_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
-------------------------------TTTTTC-------------------------------------------
--------------------------------------------------------------------------------
---------------------------------CAGCTTTATTGAGGTATAAT---------------------------
TGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGAT-ATACGTATACATTGTG-AAATGATTACCA
CAATCAAGCTAATTAACATATCCATCACC---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------
>Canis_familiaris
TAAG-AAATTTTCCAATCCATGTAAAAGTTGCAAGATGCTATATGATTT---CA-----------TTAATTTTA---TTG
AGAGTTAAGTAGTTTTATTTTTTTGAAATCTCACTTCTTTATTTCCAGACTGCGTGTCAGTTTTATTTGCATTGAATACC
ACATAATAATCATGTCAATGTAAAATATTAAAGAGGGACTAGAGTGTCATTGTAAGGAAATATCTTCATCAACTAAATTA
CCTTTTTTTTTTTTTCTTTTTTACTTTTTTAGTCAGGTTTATTGAGGAATAATTTAGAGAATTAAGGAATTTTATTGAGG
TGACATAG-ATTATTATGTCAGTTTTAGGTATATAACATGA---TTTGATAATACTTATATACTGTA-AAATGATTACCA
CAGT----TTAGTGA--ATATC----------TAATAATTCA-T---GTTTGAAA----TCACC-TTGG-------AAAG
T-------AGA--CT-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TTTCTT---TTGGTTGTTAAA
>Felis_catus
TAAG-AAATTTCCCAATCCGTGTGGAAGTGGCAAGATGCTATCTGATTT---CA-----------ATAATTTAA---TTG
AGATTGAAG-----------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------TAATTTTATTGAGAGAG--C---------------------------
TGACATAT-AATATTGCATCAGTTTTAGGTATGTAATATGATGATTTGAC-ATATGTATATACTATA-AAATAATTACTG
CAGT----TTAGTGA--CTATC----------CAAACATTCA-G---GTTTGAAG----TCACCCTTGG-------AAGG
T-------AGAC--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TTTTTT---GTTGTTGTTAAA
>Manis_pentadactyla
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT---CA-----------GTAATTCAG------
---------------GGGTTT------CCCCCTGCCC-------------------------------------------
--------------------------------------------------------------------------------
---------------------------------TGGTTTTACTGAGATACAAC---------------------------
TGACATAT-AATATTAAATTTGTTTTAGTTATTTAACATGACGATTTGAT-ATATGTATATATTGTG-AAATGA-CAGCA
CAGTAAATTTAGTTA--ATATG----------CAATAATTCA-G---GTTTAAAG----TCACC-TTGG-------AAGG
A-------GGAATTTTTT--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TTTTTT---TTGGTTATTAAA
>Sus_scrofa
TAAA-AAGTTTCCCAATTCATGTGGAAGTGGAAACATGTTTTCTGATTT---CA-----------ATAATTCAG------
---------------GGGTTC-----------CCCTC-------------------------------------------
--------------------------------------------------------------------------------
---------------------------------CCATTTTATTCAAATATAAT---------------------------
CGATATA--AACATTATTTTAGTTTTAGGTGCATACTGTGATGATTTAAT-A----------------AAGTAATTACTA
CAACAGGTTTAGTTA--ACATC----------CAAGAGTTCA-G---GTTTAAAG----TCACC-TCGGAAAATAAAAAA
A-------AAAGTCTTTTTGCCTTTTCTAGGGCCGCTTCCCATGGCATATGGAGGTTCTCAGGCTAGGGGTCAAATCAGA
GCTGTAGCCACCAGCCTACGCCAGAGCCACAGCAACGCGGGATCTGAGCCTCGTCTGCGACCCACACCACAGCTCATGGC
AACGCCAGATCCTTTACCCACTGAGAAAGGCCAGGGATCGAACCCGCAACCTCATGGTTCCTAGTCGGATTCATTAACCA
CTGCGCCATGACGGGAACTCCTAAAAAAAATTTTTT---TTGGTTGTTAAA
>Bos_taurus
TAAAAAAATTTCCCAACTCATGCGGAAGTGGCAAGATGTTTTCACAATT---CACAATTGCTTTCACAATTCAC------
---------------AATTGCTTTCACAATTTCCTTC-------------------------------------------
--------------------------------------------------------------------------------
---------------------------------TCATTTCACTGAAATATAACT--------------------------
TGAGATAT-AACACTGCATTAGTTTTAGGTAAATAACATGATGATTTAAT-ACATGTATGTATTGTG-AAATGATTACCA
CAGTAAATTTAGTTA--ATACC----------CAATAATTCA-G---GTTTAAAG----TCACC-TTGG-------CAGG
T-------AAAATTTTTT--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TTTTTT---TAGGTTGTTAAA
>Equus_caballus
TAAGAAAATTTCCCAATCCATGTGAAAGTTGCAAGATGTAATCTGATTT---CA-----------ATAATTTAG------
---------------AATTTC---------CCCCCTC-------------------------------------------
--------------------------------------------------------------------------------
---------------------------------CAGTTTTATTGAGATATAAT---------------------------
CGACATAT-AACATTGTATTGCTTTTAGGTGTATAACATAATGATTTGAT-GTATGTATATACTGTGAAAATGATTACCA
CAATAAGTTCAGTTA--GTATC----------CAATAATTCA-A---GTTTAAAG----TCACC-TTGG------AAAGG
T-------GGAATCT-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TTTTGT---TTGGTTGTCAAA
>Ceratotherium_simum
TAAGAAAATTTCCCAATCCATGTGGAAATGGCAAGATGTTATCTGATTT---CA-----------AAAATTTCG------
---------------AGTTTT-----------TCCCC-------------------------------------------
--------------------------------------------------------------------------------
---------------------------------CAGTTTTATTGAGATATAAT---------------------------
TGACATAT-AACATTGTGTTAGTTTTAGGTGTATAACATGATGATTTGAT-ATATGTACATATTGTGAAAATGATTACCA
CAATAAGTTTAGTTA--ATATC----------CAATAATTCA-G---GTTTAAAG----TCACT-TTGG-------AAGG
T-------GTAATC------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TTTTTT---TTGGTTGTTAAA
>Myotis_myotis
TAAAAAAAATTTCCCAATCCTATGGAAGTGGCAAGGTGCTATCTGATTT---CA-----------TTAATTCAG------
---------------GGGCTC---------CCACCCC-------------------------------------------
--------------------------------------------------------------------------------
---------------------------------CAGTTTTATTAAAATATAAT---------------------------
TGACATAT-AACATTGTACTAGTTGTAGGTGTATAACATGATAATTTGAT-AGAAGTAT-TATTGTG-AAATGATTACTA
TAATAAGCTTAGTTA--ACAGC----------CAGTAATTCA-G---ATTTAAAG----TCACT-TTGG-------AAGG
A-------ATAATCTTTTTGTTTGTATATTTG------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TTTTACTGGTTGGTTGTTAAA
>Rhinolophus_ferrumequinum
TAAGAAAATTTCCCAATCCACATGGAAGTGGCAAAATGTCATCTGATTT---CA-----------ATAATTCAG------
---------------GGTTTC--------CCCACCCC-------------------------------------------
--------------------------------------------------------------------------------
----------------------------------AGATTTACTGAGATATAAC---------------------------
TGACATGT-AACATTGTTTTAG------GCATATAACATGATAATTTGAT-ATATGTATATAATGTG-GAAGGATTACCA
CAGTAAGTTTAGTTA--ATATT----------CAATAATTCA-G---GTTTAAAGTAACTCATC-TTGG-------AAGA
A-------ACAATCTTTT--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TTCTTTTTTTTGGTTGTTAAA
>Condylura_cristata
TGAGAAAATTTCCCAATCCATGTGGAACTGGCAAGATGTTATCTGATTT-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------CAATAATTCA-G---GTTTAGCG----TCACC-TCAGTGATAAGGAGG
TAGAAGGCAGAATCTTTTTTTTT---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TTTTTT---GTGGTTGTTAAA
>Solenodon_paradoxus
TAAGAAAATTTTCCAACCCTTGTGGAAATGACAAGATGTTATCTGATTT-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------AAATAACTCAGG---GTTTTTAG----TCACC-TTAGTAATAAGGAAG
T-------GGAATTTTT---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------ATTTTT---TTGGTTGTTAAA
>Homo_sapiens
GAAGAAAATTTCCCAATCCATGTGGAAGTGGCAACATGTCATCTGACGT-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------CAATAATTCA-G---GTTTAAGG----TCACC-TTAGTGTTAAGGAGG
T-------GGAATCTCTC--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TT-------TTGGTTGTTAGA



Bat172_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATAT
ACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTACCA-----------
---------------------------TTTTTTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAAATTTCAA
GTATAC----AATACAGTATTATTAAC---------TATAGTCACCATG---------------------CTGTA-CATT
AGATCTCCAGAACTTATTCATCCTGCATAACTGAA-ACTTTGTACC----------------------------------
--------------------------------------------------------------------------------
-----
>Canis_familiaris
TTGTTGCTATTAT------TATTTTTACCTTTC--AGTTT-ATGCTTTTGTGGCATAAT---CAATT----------TT-
-------CCAGTTTTGTTAAGATATGATTAATATAC-AGAACTGCATATGTTTAAGATGTATAGCAT-ATAATTTGATTT
ACATAT--ATCATGAAATTACTACCAC----AATTTAATTAAC--ATTCATTGTCTCCTGTAGTCACAAAA---------
---------------ACATTA------TTTCCCT---TGTGATAAGAACTCTTAAGATTTATTCTTTT---AACTTTCAT
TCATACCCAAAATATAGAACATGTCACAAATTTGTGTGTCATCCTTGTA-AGGGGTCATACTGA---TCTCTGTATCATT
CCAATTTTAGTATATG----TGCTGCCAAAGTGAGCA------------CTACGTATGTATATA----------------
---------------------------TGATGCTTATTTCAGTAGACCTTCCATC-------TTTGTCAGACAAAAAAT-
TTCTT
>Felis_catus
TTGTTGCTATGATTTT---TTTTTTTACCTTTC--AGTTT-GTGCCTTTGTGGCATAAT---CAGTC---------TTT-
-------CCAGTTTCACTGAGATATAATTGACATAC-AGCACTGCATTCATTTAAGAGACACAGCATAATGATTTGATTT
ACATAT--ATCATGAAGTAATTACA------AGTTTACTTAAC--AT-AAGTATCTCATACAGTTACAAAA---------
---------------AAAATA------TTTTTCT---TGTGATAAAAA--CTTAGGAT-TACTATCTT---AACTTTCAT
TTATAGCAAAAATATGGAACAGTTCACAAATTTGTGTGTCATCCTTATG-GGGGGCCATGCTAATCTTCTCTGTATCATT
TCAGTTCTATTATGTG----TGCAGCCAAAGTGGGCA------------ATCTATATCTATATC---TGTATCTATCTAT
ATCAATATCTATATGCACACACACACATAATGCTTATTTCGGTAGACCTTCCATCTTCCATTTTTGTCAGACAAAGCAA-
TTCTT
>Manis_pentadactyla
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------TACTGCCTAAGTGACCT------------CATTCTATTTTTT------------------
---------------------------TAATGCCCATT-CAATGGACCCTCCATC-------TTTGTCAGAAAAAGCAA-
TTCTT
>Sus_scrofa
TTGTTGCTATTAT------TATTAT------------------------------TAAT---CAATT---------TTT-
-------CCAG-----------TACAACTGACAAAC-ATTACTGTGTAAGTTTAACGTGCATAACACAATGGTTCAACTT
AGGTAT--ATCATGAAATGATTACTAC---------ATTTCAC--AT-CATCATTTCATATAGATACATCATCTAATAAG
ATACAAAAAAAAGAAAAAATA------TTTTCTT---TGTTATGAGA------AGGATCAATGCTCTTAACAACTTTCAT
ATATACCAAAGATATGGAATGCTCCACAAATTTGCATGTGATCC-TGTGCAGAGGTCATGTTTATCCTCTCTCTATCACG
GCAATTTTAACATACA----TGCTGCCAAAGCTAACA------------CGATCTATTTT--------------------
---------------------------TAATACCTATTTCA-TAGACCTTCCATC-------TTTACCAGACAAAACAA-
TTCTT
>Bos_taurus
TTGTTGCTATTCT------TATTATTATCTTTC--AATTTCATGCTTTAATGGCATAAT---CTATT-------TTTTT-
-------CCAGTTTCATTGAGATGCACTGGATGTAC-AGCACTGTATAAGTTTAAGATGTATAGCATAATGATTTGACTT
ACATAT--ATCATGATATGATTACTACA---AGTTTAA----------CATCGTCTTATACAGATCCATAATCTCATCA-
TTACAAAAAAAGAAAAAAATA-------TTTTAT---TGTGATGAGA------AAGATCAATTCTCTTAACAACCTACAA
ATATACCAAAAATATGGAATCCTTCACAAATGTACATGTCATCC-TGTA-CAGGGCCATGTTAATCTTCTCTGCATCATT
CCAATTTTAGCATATG----TGCTGCCAAAGCTAGCA------------CAATCTATTTTT-------------------
---------------------------TAATGCCTATTTCAGTAGACCATCCATC-------TTTACCAGAC-AAGCAA-
TTCTT
>Equus_caballus
TTGTTGCCATTGTTATTATTATTATGACCATTC--AATGTGATGCCTTTATGGCATAAT---GAATCTA----TTTTTT-
-------CCAGTTTTATTGAGCTATAATTGACATAC-AACACCATATAAATTTAAAATATACAGCATAATGGTTTGACTT
ACAAAT--ATTATGAAATGATTGCACCA---AGTTTAGTTAAC--ATCCATCATCTCAGATAGTTATAAAA-------AA
AGAAAAAGAAAAAGAAAAATATACGTTTTTTTCT---TGTGATGAGAACTC--AAGATTTACTCGCTTAAGAGCTTTCAC
ATATACCAAAAATATGTAACGCTTCATGAATTTACATGTCATCCTTGTG-AAGGGCCATACTAA---TCTCTGTATCATT
CCAATT-TAGTAGATG----TGCTGCTGAAGTGAGCA------------CCAACTATTTTTTT-----------------
---------------------------TAATACTTATTTCGATAGACCTTTGGTC-------TTTGTCCGACAAAGAAA-
TTCTT
>Ceratotherium_simum
TTGTTGTTGTTATTATTA-TATTATTACCATTC--AATTTGATGTTTGTATGGCATAAT---TAATCTA----TTTTTT-
-------CCAGTTTTATTGAGATATAATTGACACAC-AGCACTATATAAATTTAAGGTGTACAGCATAATAATTCGACTT
ACATAT--ATTGTGAAATGATTACTACA---AGTGTAGTTAAC--ATCCACCATCCCATATAGTTACAAAA---------
-CAAAAAGAAAAAGAAAAAAA------CTTTTCT---TGTGATGAGAACTCTTAGGATTTATTCTCTTAGCAACTTTCAC
ATATACCAAAAATATGGAGCACTACATGAATTTGCATGTCATCCTTGTG-GGGGGACATAGTCA---TCTCTGGATCATT
CTAATTTTAGTGTATG----TGCTGTT-AAGTGAGCA------------CAATCTATTTTTTC-----------------
---------------------------TAATGCCTATTTTGGTAGACCTGCGACC-------TTTGTCAGACAAAGCAA-
TTCTT
>Myotis_myotis
TTGTTGCTAATATTAT---AATTATTACTGTTCAAAATTTGATGCTTTGA-GATATGAT---CAATCTA-----TTTTT-
-------CCAATTTTATTGAGATATAATTGATATAT-AGCACTGTAT--GTTTAAGGTATACAGCATAATGATTTGACCT
ACATTT--ATCATGAAACATTTACCACA--------AGTTAAT--ATCGGTCATCTCATGTCAACACAA-----------
------------------ATATATATTTTTTTCT---TAAGAAGAGAGCCCTTAGGACCTACTCTCTTGACAACTTTTAT
ATATAACTGAAATATGGAATGCTTCACAAATTTGTGAGTCATCCTTGTGCAGGGGCCATGCCAGTCTTCTCTGTGTTGTT
GCCATTTTAATACCCGTAGGTGCTGCTGAAGTGAGCA------------CAATCTGCTTTTC------------------
---------------------------ACATGCCTGTTTTGATAGATCTTCCAT--------TTTGTCAAACAAAGCCA-
TTTTT
>Rousettus_aegyptiacus
TTGTTGCTATTATTAT---CATTATTAGTGTTC--AATTTGATGCGTCTATGATGTAAC---CAACCTC----TTTTTT-
-------CCAGTTATATTTAGAT--------------AAAACACTATCAGCTTAAGGTGTATA-CATAATGATGTGATTT
ACATAT--ATCATGAAACTTTTACCACA---GGTATAATTAAC--ATCCATCATCTCATATAGAGACGAAA---------
-----AGAAAAAGAAAAAAAA------TTTTCCT---TGTGATTAGAACTCTTCGGAACTATCGTCTTGACAACTTTCAT
AAACTCCCCAAATATGAAACACTCCACAAATGTGAGCATCATCCTTGTGCAGGGGCCGTGCTAATCTCTTCTGTATCATT
CCAATTTTAGTGTATG----TGCTGTCAAAGCGAGCA------------CAGTCTATTCTTTTT----------------
---------------------------AAATGCCTATTTCAGTAGAGCTTCCAT--------TTTGTCAGACAAAGCAG-
TTCTT
>Condylura_cristata
TAGTTGCAAT---------CATTATCACCTTT---AAGTTGACATTTTTATAGCATAAT---CAATATATTTTTTTCTA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------AAGTGCCTATTAAAATAGATGTCT-----------ATTGTCAGACAAAGCTAC
TTTTT
>Solenodon_paradoxus
TTGTTGCTATTAT------TACAT------TTC--AATTTGATGTTTTTATCATGTAAT---CAATCCA--TATTCCTA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------AAATGCCTATTTTTGTAGACTTCCCATC-------TTTGTCTGACAAAGCAA-
TTCTC
>Homo_sapiens
GTATTACGATTTTGATCATGACTATTACCTTTC--AATTTGATGCTTTTATGGCATAAT---CAATCTA----TTGTTA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------AAGTGCCTATTTTGGTACACCTTCCATC-------TTTGTCTGAGAAAGCA--
TTCTT



Bat174_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
----------------------------------------TTTTTCCAGCTTT--------ATTGAGGTATAATTGACAA
ATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATATACGTATA----CATTGTGAAATGATTACCACAAT
CAAGCTAATTAACATATCCATCACCTCA----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------CATAGT
TACCAT---TTTT-------TTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAAATTTCAAGTATACAA-TAC
AGTATTATTAACTATAGTCACCATGCTGTACATTAGATCTC--CAGAACTTATTCATCCTGCATAACTGAAACTTTGTAC
CCTTT---------------------------------------------------------------------------
-------
>Canis_familiaris
CAAATCTTTCTAGGATAAATTCATCTTTATCTGCCACGGGTCTTGAGGAC---TACTTGTATTTTTT-------------
---TTTAAGCAAAAGAATTTACTAGTAT----------TATTTTTAAAGGTTTTT--AAAAATTGAGATATAATTGATAC
AC-AACATTATATTAGTTTCAAGTGTACAACTTCATGATTTCATATTTATAGA----TATTACAAAATAATCACC--AAT
AGGTCTAGTTAA--GATCCATCAGCATA----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TGCAGT
TACACTTTGTTTTGTTTTGGTTTTTTGCAATGAGAACTTTTAAGATCTACTCTCTTGGCAATATTCAAGTATGCAA-TAC
AGCAAGATTCACTATAGTCA-----------------TGCC--CAGGACTTATTTATTTT--AGAATTGGAA--------
--------TACTT---GTATCTTTT---GTCTCTTACTTCATATCTAAAATTA--------CTATCAAATC-AGGAGTAG
CTCCTCT
>Felis_catus
GAAATCTTTCTAGGATAAATTCGTCTTTACCTTCCATGGGTCTTGAGGGC---TACCTGTATTTTTT-----------TT
TCCTTAAAGCAAAAGTATTTATTACTAT----------TATTTTCAAAGATTTTT--TTTAATTGCGGTATTATTGATAT
AT-AACACTATATTAGTTTCAGG--TTCAAATTCACGATTCCATATTTGTGTG----TATTGCAAAATGATCACCGCATT
GGATCCAGTTAA--GATCCATCAGCACACAGGGGCGCCAGATGGCTCAGTCAGTGAAGCGACCAACTCTTGATTTCCGCT
CAGGTCACGATCTCATGGTTCGTGGGTTGGAGCCCCATGTGGGACTCGGGGCTGACAGCATGGAGCCTGCTTGGCATTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCCCTCTCTCCCCTCCCCT
GCTTGTGCTCTGTCTCTCTCTCTCAAAATACATAGATAAACATAAACATGAAAATAAAAAGATACATCAGCATACGTGGT
TACGC----TTTT-------TTCTTTTCGGCGAGAACTTTTCAGACCTACTCTC--AGCAATATGCAAATACGCAGTTAC
CGCAAGATT----ATAGTCACCGTGCAGCCCTTCACGTCC---CAAGACTTATTT-------ATAGCTGGAT--------
--------TACTTCTTGCACCTTTT---GTCTCTTACTTCATATCTAGAATTA--------TTATCAAATC-AGGAGGGG
CTTCTCT
>Manis_pentadactyla
GAAATATTCCCAAGATGAGT-GGTCTTTGCTTTCCATGGGTCTAGAGAGC---TGCCTGTACCTTTC-------------
-TTTTAACATAAAAATATTTAT----------------TTATTTACTAGGTTTTTAAAAAAACAGAGTCATAATTGACAC
AA-AACATTTTATTAGTTTCAGGTATACAACTTAATGATTCAATATCTGTATA----TTTTGCAAAATGATCACCAC---
AAGTCTGGTTAA--CATCCATCACTGTA----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------CTTATT
TACAACA--TTTT-------TTTCTTGTGATAAGACCTTTTAATACCTACTCTATTAGCAACTTTAAAATATGCAA-TAC
AGTATCATTAACTATAGTCACCATGCTGTACATTATACCCCCTCAGGACATACTTATTTT--ATAACAAATA--------
--------TACCT---GTATTTTTT---GTCTCTTTCTTCATATCTGGTATTA--------TAATCAAATC-AGGAGTAG
CACCTCT
>Sus_scrofa
GAAATCTTTCTGGGATAAATTTATCTTTATCTTTCATAGGTCTTGGGGGC---TACCTGAATCTTTG-------------
AAAAACCCACAAAAATATCTATTTCTGTATTTATT---ATTTTTAAAAGATTCAT--AAAAATTCAAGTATAGTTGACAT
---AACAGTATGTTAGTTTCAGGTATACGACTT---GATTCAACATTTGTACA----TATTGCAAAATAATCAC---AGT
AAGTCTAGGTAA--CATCCGTCACCATC----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TATAGG
GACACATATTTTT-------TTTTCTGTGTTCAAAG-TTTTAAGATCTATTCTTTCAGCAACTTTTGAATATGCAA-TAT
GGTGTTATTAACGAGAG-CATCATGC-ATATATTACATTCT--CAGGACTTT----------ATCACTGGAA--------
--------TACCT---GTACCTTTT---GT--CTCATTTTATAGCTAGGATTA--------TAATCAAATC-AAGGGATT
CTCCTCT
>Bos_taurus
GAAATCTGTCTAGGATAAATTTGTCTTTATCTTCCATAGATCTTGGGGGC---TATCTGTATTTTTT-------------
----TAATCTAAAAATATTTATATATTTATAA------TTTCTAAAAAGATTTTT---TAAATGTGGGTATAACTGACAT
AT-AACAGTATATTAATTTCATGTATACAACTTAATGCTTCAGTGTGTGTATATTTTTACTACTAAATGATCACCACAAT
AAGACTAGG-----CACTTGTCACCATACAGG------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------CATAGT
TAAAA----TCTT-------TTTTTTGAGTTAAGAGCTTTTAAGGTCTCCTCCCTTAGCAACTTTCAAATACGCGA-TAC
AGTCTTATTAACTACAGTCACCATGATATATATTATATTCC--CAGGACTTAATTATTTT--GTAACCTAAA--------
--------TGCCT---GTACTTTTT---GCCTCTTACTTTGTATCTATAATAA--------TAATCAAATG-AGGAGTAG
TTCCACT
>Equus_caballus
GAAATCTTTTAGAGATAAATTTGTCTTTATCTTCCATGAGTCTTGAAGGT---TACCTGTATCTTTT-----------TT
GTTTTTACACAAAAATATTTA--------------------TTTTTTAGATTTTT--TATGATTGCGGTATAATTGACGT
AT-AACATTATATTAGTTTCAGAGGTACAATTTAATGATTCAATATTTGTATA----CATTGCAAAATGATCACCATAAT
AAGTCTAGTTAA--CATGCATCTCCATA----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------CACAGT
TACAAAACTTCTT-------TTTCTTGTGATGAGAACTTTTGAGATCTATCCTCTTAGCAACTTTCAAATATTCAA-TTC
AGTATCATTAACCATAGTCACCATGCTCGACATT----------------------------------------------
---------ACCT---GTACCTTTT---GT--CTTACTTCATTTCTAGTGTTA--------CAGTCAAATC-AGAAGTAG
CTCCTCT
>Tapirus_indicus
GAAATCTTTTTGAGATAAATTTGTCTTTATCTTCCGTGGGTCTTGAAGGT---TACCTGTATCTTTT---TTTTGTTTGT
TTTTTTACACAAAAGTATTTA--------------------TTTTTTAG-TTTTT--AAAAATTGAGATATAATTGACGT
AT-AACATTATATTAGTTTCAGGTGTACAATTTAAGGATTCAATGTTTGTATA----TATTGCAAAAGGATCATCACGGT
AAGTCTAGTTAA--CATCCATCACTATA----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------CACAGT
TACAAAA--TTTT-------TTTCTTGTGATGAGAACTTTTAAGATCTACTCTCTTAGCAACTTTCAAATATGCAA-TAG
AGTATTATTAACTGTAGTCACCACGTTGTACATTATATCCC--CAGGACTCATTTATTTT--ATAATTGGAA--------
--------TACCT---GTACCTTTT---GT--CTTACTCCATGTCTAGTATTA--------TAATCAAATC-AGGAGTAG
CTCCTCT
>Myotis_myotis
GAAATCTTTCTAGGATGTATTGGCCTTTCTCATCCATGGGTCTTGAGATC---TATATGCACCCTTT-------------
-CTTTAACATGAAAATACTTACTTACTTATTTATATTATTATTTTTTAGATTTTA-AAAAAATGAAGCTATAATTGTCAT
AT-AACA--GTATTAATTTCAGGTGTACAACTTAATGATTTGATATTTGCATA----TATTGCAAAATGATCACCACAAT
AAGTCTAGTTAACCCATTTGTTACCACA----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------CGAAGG
TACAAAA--TGTT-------TTTCTTGTGATGAGAACTTTTAAGATCTACTTTCTTAGCAACTTTCAAATAT--------
AGTATTATTAACTATAATCACCAAATTGTACATTAAATCCC--CGGGGCTTATCTATTTT--ATAACTAGAA--------
--------T-CCT---GTACCCTTT---ATCTCTTACTTCATATCTGGTATTA--------TAATCAAATC-AGGAGTAG
CTTCTCT
>Rousettus_aegyptiacus
GAAATCTTTCTAGGATATATTTTCCTTTCCCTTTCACAGTTCTTGAGGGC---TATCTGCACTTTTA----------AAA
AAAAAAACACAAAAATATTGATTTATTTTTT-------TTATTTTTTAGCTTTTT--AAAAATTGAGTTGTAATTGA---
---AATATAATATCAGCTTCAGGTGTACAACTGAATCATTTGATATTTGTATG----TATTA-AAAATGATTACCACAGT
AAATTTAGTTAT--CATCTGTTACTGTA----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------CATAGT
TACACAATTTATT-------TTTCTTGTGATGAGAACTTTTAAGATCTACTCTCTTAGTAACTTTTAAATATTCAA-TAC
AATATTGTTAACTATAGTTAACGTACTGTGCATTACATCCC--CAGGAACTATTTATTTT--ACAACTGGGATA------
--------TACCT---GTACATTTT---GTCTCTTACTTCATGTCT---CTCA--------TAATCAAATC-AGGAGCAA
CTCCTCT
>Condylura_cristata
GACATCTTTCTAGGATAAATTTGTCCTTAT------AGCATCTTGAGGGT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------TACTT---GTACCTTTT---ATCTATTATTTAATGTCTAGCATTAGGTTGTAATATATAATTC-AGTTGTGG
TGCCTCT
>Sorex_araneus
GAAATCTTTTCAGGGCAAATACGTCTTTATCATTTACTCATCTTGAAGTC------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------TCTCT---------TTT---GTCACTTACTTCGCATCTAATATTA------------GAAAACTAGGAACAA
CACTACC
>Homo_sapiens
GAAATCTTTGTAGGATAGAATTGTC--TATCTTCCATGGGTCTGGAGGGC------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------TACCT---------TTT---GT---GTATTTAATATTTAGTATTA--------TAATCATATC-GTAAGTGT
TT---TT



Bat180_LINE

>L1MA9_3END
-------------------------------------------------------------------------GTAATCA
TTTCACA-------------------------------------------ATGTATACGTATATCAAAACATCACGTTGT
ACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAA-----GCTGGAAAAA-----------------
--------------------------------------------------------------------------------
------------
>Canis_familiaris
TACTAA-GCCTCAGCTCTCCGCAA-ACCAGATCTGATGACAAACTGCCAAGTTC---AACAAAATGAAAT----------
--TTGCA-------------------------------------------ATATATACATATATCAAATCATTATGTTGT
ATACATTGGTCTCATA----TGTAATATATCAATTTTAGCTCAAGAAACT---GGGGGAGA-----------AATCATCT
GGCAT---C--T-GTACCTACATGT---------------------------------TACAAAAGATTATTTGCATACA
GTTCCAAGGGTA
>Felis_catus
TGCTAACGTCTCAGCTCTCTACAA-ACCATTTCTGATGACAAGCTGTCAAGTTC---AACAATATGAAAT----------
--TTGCA-------------------------------------------ATACATGCATATATCAAATCATCATGTTGC
ACACATTGGACTGATATGT-TCTTATA--TCAACTATCT--------------GGGGAAAA-----------AGCAATCT
GGCAT---CTGT-ACTCCCACAT-----------------------------------TAGGAAGGATCGTTTGCCTGTA
GTTTCAAGGTCA
>Manis_pentadactyla
CGCTAA-GCCTCACCTCTGTGCAA-ACCAGATCTGATGACAAATTGTCAAGTTC---AGCAACATGGCTT----------
--TTACA-------------------------------------------ATATAGACAGACATCAAACCAT---GTGGT
CCACCTTGGACCA-------CGTTACATGTCAAGTATATCTCAATAAACCCGAGCAAAAAA-----------CCAACATT
GACAT---CCCT-GTTCTCACACATACTGTAAAACATTTACAAAAAGAAACATAGAACAAAAAAGGATTGTCTGCCTGCA
GTTTGAGGGGCA
>Sus_scrofa
TGCTAA-GCCTCAGTCCTCCACAATGTGAGATTTCATGACAAGTTGTCAAGTTC---AACAATATGGTAT----------
--TTGCA-------------------------------------------------ATATATATCAAATCAT--TGTTGT
ACACCCTGGACTAATACAA-AATTATATGTCAGTTATATCTCAATAAAACTAAGGGGGAAAAA---------AACAGTAT
GACAT---CCAT-GTTACCACACTT---------------------------------TAAGAAAGACTGTTTGCCTTCA
GTTTCAAGGGCA
>Tursiops_truncatus
TGCTAA-GCCTCAGCTCTCCACAA-ATGAGATACGATGACAAATTGTCAAGCTC---AACAATGTGGCAT----------
--TTGCA-------------------------------------------------GTATATATCAAATCATTATGCTGT
ACACGTCAGACTAATATAA-TGTTATGTGTCAATTATATCTCAATAAAGCTGGGGGGGAAA-----------AACAGTGT
GACAT---CCAT-GTTCCCAAACAT---------------------------------TAAGAAAGGTTGTTTGTCTGCA
GTTTCAAGGGCA
>Equus_caballus
TGCTAA-GCCTCAACTCTCCACAA-ACCAGATCTGATGACAAACTGTCAAATTC---AACAACATGACAT----------
--TTGCA-------------------------------------------ATATATACATATATCAAATCATTATGTTGT
ATACCGTGGACTAATATAA-TGTTATGTGTCAATTCTACCTCAATAAACT---GGAAAAAAAA---------ACCAATAT
GACAT---ACTT-CTTCTCACACAT---------------------------------TCAGAAAGATTATTTGCCTGCA
GTTTCAAGTGCA
>Ceratotherium_simum
TGCTAA-GCCTCAGCTCTCTATAA-ACCAGATCTGATGACAAATTGTCAAGTTC---AACAATATGATAT----------
--TTGCATATCATATATATACATATATCAAATATATGTATATATACATATATATATACATATATCAAATCATTATGTTGT
ACATCTTGGGCTAACACAA-TGTTATATGTCAATTATATCTCAATGACCT---GGGAAA-------------AAATATAT
GACAT---CCAT-GTTCTCATACAT---------------------------------TAAGAAAGATTATTTGCCTGCA
ATTTC-GGGGCA
>Myotis_myotis
TGCTAA-GCCTCAGCTCTCCACAA-ACCAAACCTAATAATAAATTGTCAAGTTG---AACAAAATGACCG----------
--TTGCA-------------------------------------------ATATGCACATATATCTTATCATTATGTTGT
ACAACTTTGAC-GAGATAA-TCTTATCTGTCAATTACATCTCAATAAACT---GGAGAAAA-----------AGCAATAA
AACAT---CCAT-GTTCCCACACAT---------------------------------CAAGAGAGATTGTTTGCCTGCA
GTTTCAAGGGCA
>Rousettus_aegyptiacus
TATTAA-GCCTTAGCCCTCCACCA-ACCAGATCTGATGAAAAATTTTCAAGTTC---AACAATTTGACAT----------
--TTGCA-------------------------------------------ATACCTATGTGTATCATATCATTATGTCAT
GCACTTTTAACTAATATAA-TGCTATATGTCAATTATATCTCAACAAACTGAAGAAAAAAAAAAAAAAA---GCCAATAC
AACAT---TCAT-GCTCCCACACAT---------------------------------GAAGAGAGGGTGCTTGTCTGTG
ATTTCAAAGGCA
>Condylura_cristata
TA-TAT-GCCTCAGCACTCCAGAG-ACTAGCT---ATGACAAACTGTCTAGTGC--------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------AATGACAA
GACAT---CTACAATTCTTATACAT---------------------------------TTAGAAAGATCA----CCCACA
GTTTCAAGGACA
>Uropsilus_gracilis
TGCTAA-GCCTAAGCACTCCAGAG-ACCAGACATGAC----AACTGTCTAGTGC--------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------AATGA---
--CAT---CTT--GCTTTTACATAT---------------------------------TTAGAAAGATTG----TCCACA
ATTCCAAGGGCA
>Cavia_porcellus
TCCAGA----TCTGTCACCCACAA-GTCAGATCTGATGAGAAA--GTCAATATT--------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------AACAATCC
TACAT---CCAT-ATTTTTACATAT---------------------------------TAAGAAAGACTATTTGCTTTTA
ATGCCAAGAGCA



Bat189_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
------------------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATA-TATTTAAGGTGTACA
ACGTGATGTTTTGATATA-----------------CGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATA
TCCATCACCTCACATAGTTACCA-----TTTTTTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAAATTTCA
AG-------------------------------------------------------------------------
>Canis_familiaris
TCTTTAGAATTTATCT-----TCTATTATTCTAAATTT---GAAGATATATATAT----------------TGAA---TT
CCAATACTATT-TTT----------------ATTGATGTATAATTGAC-TAT-AAGATTATATTGACTTTTAGATATACA
ACAT---GATATAGTATTTGTACTGAGAAATATATTGTATGTATTGAGAAATGAT-ATCACTATAAG--TAGTT--GACA
TCCATCCCCATACACAGTTACAAAGATTTTTTTTTTCTTGTGACAAGGACTTCTGAGATCTACTCTCT------------
-----TACCAGTACTAC-TTT---AATATATTA-TAGGGTTTAAGGAATAAACCAAAGAAAACAGCGCATGTGAA
>Felis_catus
TCTTTAGAATTTGATTATTT-TCTG---TTCTGGATTT---AAAAATATGTAAAT----------------TGAA---TT
CTAC--------TTT-------------TTTATTGAGGTATAATTGACATAT-AAGATTATATT-ACTTCTAAGTGTACA
ACAT---GATTCAATATTTTTATATATTGAGAAA-TATATGTATTGAGAAATGAT-ACCACAATAAG--TAGTT--AACA
TCCATCCCCATACATATTTCCAAATA--TTTTTTTTCTTATGATGAGAACTTT-AAGATCTACTACCT------------
-----TACCAATCCTACTTTT---AATATATTA-TAGGGTTTAAGGAATAAACCAAAGAAAACCGCGCATGTGAA
>Manis_pentadactyla
TCTTTAGAATTTTATTATTT-GCTG---TTTGGGGCTTTA-AAATATATATATATATGTATATA-------TATA---TT
CCAATACTATT-TTT-------------TAAATTGAGATGTAATTGACATAT-AACATTATATT-AGTTTCAGGTGTACA
ACAT---GATTCGATATT-----------------TGTATACATTACAAAATGATCACCACAAT--GTCTGGTT--AATA
TCCATCCCCATACATAGTTACAA----TTTTTTTTTCTTGTGAAAAGGACTTTTAAGGTCTACTCTCT------------
-----TACCAATAC-ACTTTA---AATATATTA-TAGGGTTTAAAGAATAAACCAAAGAAAACAGCGCATGTAAA
>Sus_scrofa
TCCT-----TTTTGTTCTTT-TCTGCTGTTCTAGATTTTTAAAATATATACATATAT--------------TGAA---TT
CCAGTACTCCT-TTA--------------TTGTTGAGTTATAATTGACATAT-AACATTGTATT-AGTTTCAGGTGTG-A
ACATAATGTTTTGATATT-----------------TGTATGTATTGAGAAATGATCACCACAGTAAGTCTAGTTTAAACA
TTCATCCCCATACATAGTTATAAGAAATATTTTTTTCTTGTAATGAGGACTTTAAAGATATAATCTCT------------
-----TAACAATATCGCTT---------TATTA-TAGGGGTTAAGGAATAAACCAAAGAAAACAGCACATGTGAA
>Bos_taurus
TCTGTAGGCATTGA--------------TTTTGGGTATTAAAAATGTACATGTGT----------------TGAA---TT
TCAATACTACT-TTT--------------TTGCTGAGTTAAAATCGACATAT-AAC---ATATT-AGTTTCAGGTGTAAA
ACATAGTAATTCGATATT-----------------TTTATATATTGAGAAATGATCCCATACTTAAGTCTAGTTTAAATA
ATTATCCCCATACATACTTACATA----TTTTTTTTCTTGTGATAAGAACTTTAAAGATCTACTCTCT------------
-----TATCAATACTACTTTT---AATATGTTA-TAGGGGTTAAGGAATAAACCAAAGAAAACAGCCCATGTGAA
>Equus_caballus
TCTTTAGAAGTTGATTCTTC-TCTGCTATTCTGGATTA---AAATATATACATAG----------------AGAA---TT
TCAATACTTCTCTTT-------------TTTATTGAGATACAATTGAC-----------ATGTT-AGTTTCAGATATACA
ACATTATGATTCAGTATT-----------------TGTGTACATTGAGAAATGATCACCGCTCTAAGTCCAGTT--AGCG
TCTGTCCCCATACATTGTTACAAA---TGTTTTTTTCTCGCGATGAGGACTTTTAAGATCTGGTCTCT------------
-----TATCAGTACTACTTTT---AATATATTATTAGGGTTTACGGAACAAACCGAAGAAAACAGCACATGTGAA
>Ceratotherium_simum
TGTTTTGAAGTTGATTCTTT-TCTGATATTCTGGATTT---AAATATATATATATAGAGAGAGAGAGAGAGAGAA---TT
CCAATACTTCT-TTT-------------TTTATTGAGATATAATTGACATAT-AACATTATATT-AGTTTCAGTTGTACA
ACATAATGGTTCAATGTT-----------------TCTGTATATTAAGAAATGATCACCACTATAAGTCTAGTT--AACA
TCTGTCCCCATACATCATTACAAA---TTTTTTTTTCTTGTGATGAGGACTTTTAAAATCTACTCTCT------------
-----TACCAATACTACTATT---AATATATTA-TAGGGTTTACGGAACAAACCAAAGAAAACAGCACACGTGAA
>Myotis_myotis
TCATGGAAAGATGAATTTTT-TCTGCTCTTCTGGATTT---AAATACACATAT------------------AGAA---TT
CTAATACTATT-TTT----------------ATTAGAACATAA-TGAC--AT-AATGTTATTTT-AGTTTTAGGTGTACA
ACATAGTGATTTGAT--------------------------------GAAATGATCACCACAATAAGTCTAGTT--AACA
TTTGTCCCCATACATAGTTACAAA----ACTTTTTTCTTGTGATGAGGACTTTTAGGATCTACAGTCT------------
-----CACCAATACTACTTTT---AATATATTA-TAGGGACTAAGGAATAAACCAAAGAAAACAGCGCATGTGAA
>Rousettus_aegyptiacus
NNNNNNNNNNNTACATATATAAATATGTATATGTATGT---ACATATACACACACATACATACACACACATAAAA---TT
CCAATACTACT-TTT--------------TTATTAAGGTTTAATAGAC--------ATTATATT-AGTTTAATGTGTACA
ACATAACATTTTGATATT-----------------TGAATATATTGAGAAATGATCACCACAATGAGTCTAGTT--AACA
TTTGTCTCCATACATAGTTATAAAAAATGTTTTTTTCTTGCTATGAGGACTTTCAAGATCTACTCTTT------------
-----TACCAATACTACTTTT---AATATATTA-TAGGGTTTAAGGAATAAACCAAAGAAAACAGCGCATGTGAA
>Condylura_cristata
CTTTCAGAAGTTGATTTTTTCCCTGCTATCTTGGATTTTA-AAATATATATGTAC----------------TGAA-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----TTCCAGTATTACATTT---AATGTATTA-CAGGGGTTAAGGAATAAACCAAAGAAAACAGCACATGTGAA
>Erinaceus_europaeus
TCTCCAGAAGCTGATTTAAT-G-TGCTATTACTGATTAGCTAAATAT------------------------TGAA-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----TTTCAACACTATTTTT---CATATATTG-TAGGGGTTAAGGAATAAACCAAAGAAAACAGCTTATGTGAA
>Homo_sapiens
GCTTTAGAAATTGATTTTCT-CCTG---TTCTAGATTT---AAGTATATAT--------------------ACAA-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----TTCCAATGCTTCTTTT---GATATATTA-TAGGGGCTAAGGAATAAACCAAAGAAAACAGCACATGTGAA



Bat216_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
---------------------------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAA
G--GTGTACAACGTGATGTTTTGAT-ATACGTATAC-ATTGTGAAATGATTACCACAATCAA-GCTAATTAA--CATATC
CATCACCTCACATAGTTACCATTTTTTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTT-AGCAAATTTCAAGTATA
-CAATACAGTATTATTAACTATAGTCACCATGCTGTACA-TTAGATCTCCAGAACT-TATTCATCCTGCATAACTGAAAC
TTTGTACCCTTTGACCAACATCTCCCCATTT-------------------------------------------------
----------------------------------------------------??
>Canis_familiaris
AAAACAA--AATGAGTAATACCTCCACAAAGCACATTCACGCCACCAAAATACTTTCACTGAGAGAAACATCATTACAGA
AATAGAAA---------TTTG--------TGTCCTTTTTTATTGAAATATATTTCACGTAC-ACCATGATGTAAATTTAA
G--GTGGAAAACATGTTGATTCGAT-ACATCTGTAT-A---------AATTGTCAT-GTAGT-GATAG------AATTTC
TA--ACATCACATAATTATCATGTCTTT-TCTGTGGTTGGAATAATTAAGATCTAGACTCTT-AGCAAGTTCGACCATTA
-TAATATAACATTGTTGTCTATATTCAGAATATGGTGCT-GAAGATCTCTAGGACCTTAGGTATCT--ACTAACTGCAAG
TTCACACCCTC-GAACAACAT-------------CC--AGGACACAGATTCTCCTC--------CGCACTCTACCTTTCT
CA--T-------TCTGTCTCTCAAGCAGACACATTCTCCAATGTTTTTATTCCA
>Felis_catus
AAAACAA--AAAGAGTAATACCTCCACAAGGGAAATGCATTCCAGCAACATAATTTCACCAAAAGAAACTTCGTTGCAGA
AATAAAAG------TTTGCTG--------TGTGTGTTTTTATTGAAATGTATTTCACATAT-AACATGATGTATATTTAA
G--GTGTAAAACATGTTGATTTGATAACATTTATAT-ACTACAATGTGAT-------------GATAG------AACCTC
TATCACATCACATAATTACCATTTCTCT-TTAGTGGTTGAAA-AATTAAGATCCAGATTCTT-AGGAAGCTTGATGATTA
-TAATACAATACTGTTGTCTATATTCGCTATATTGTGCA-TAAGATCTCCAGGATC-TATATATCA--ACTAGTCGCAAG
TTTACGCGCTT-GAACAGCAT-------------CC--AGAACACAGATACCCTT------------------------C
TG--TTCTCTCTTCTGTCTTCCAAGAAGACACATTCTCCAATGCTTTTATTCCA
>Manis_pentadactyla
AAAACAA--AATGAGTAATAACTCCATAAAAGAAATACATTCCAGCAACATACTTT-ACCAAAAGAGACTTCACTGCAGA
AATAGGAATAGAGATTCATTG--------TGT---TTTTTATTGAAATATATTGGACATAT-AACATGATATACATTTAA
GATGTATACAACATGTTGATTTGAT-ACATTTTTAT-ATTATAATATGATTGCCATTGTAGT-GATGGTTGG--CACCTC
TACTGAGTCACATAATTATCGTTTCTTT-TTTGTGGTGGTAATAATTCAGATCTAGACACTT-AACAAGTT----GATCA
-GAACACAATATTGCTATCTCTTTTCGCTCTG-TGTGCA-TTACACTTCCAGGACC-TGTATGTCT--ACCAGTTACAAG
TTTGCACCCTT-ACACAACAT-------------CC--AGGACAGAGATCCCCTTC--------TGCAGTTTGCCTTTCT
CT--CTCTCTCTTCTGGATTTCAAGGGGACACATTCTCCAACATTTTCACCCCA
>Equus_caballus
AAAACAA--AACGAGTAATATCTCTACAAAGGAA--ACATTCCAGCAACATACTTTCACCAATAGAAACTTCATTGCAGA
AACAGAAATAGAGATTTGTTT---CATTTTGT---TTTTTATTGAAATATATTTGACATAT------TGTGTAA---TAA
G--GTATAAGACATGTTGATTTGAT-ACATTTATAT-ACTGTAATATGGTTGTCATTGTTGC-GATAG------CACCTC
TATCATGTC--ATAATTCTCATTTCTTT-TTTGTACTTGGAATAATTAAGATCCAGACTCTT-AGCAAGTTTGATGATTA
-TAATACAATATTGTTGCCTGTATTCACTACACTGTGCA-TTGTATTTCCAGGAGC-TATTTGTCT--ACTAGTTGCAAG
TTTGTAC-CTT-AAACAACAT-------------AC--AGGATACAGAGTCCCTTC--------TCCAGTTTGCCTTTCT
CG--TTCTCTCTTCTGTCCCTCAAGCAGATACATTCTCCAAGGTTTTTGTTCCA
>Ceratotherium_simum
AAACCCA--AATGAGTAATATCTCTACAAAGGCA--ACATTCCAGCAGCATACTTGCACCAAAAGAAACTTCGTTTCAGA
AATAGAAACAGAGATTTGTTT--------TGT---TTTTCATTGAAATATATTTGACATGT----ATGATGTAAACTTAA
G--GTGTAAAACATATTGATTTGAT-ACATTTATAT-GTTGTAATATGACTGCCATTGTAGT-GATAGTTAG--CATCTC
TATCATGTCACATGACTATCATTTCTTT-TTTGTGGTTGGAATAATTAAGATCTAGACTCTT-AGCAAGTTTGATGATTA
-TAATACAATAG----GTCTATATTCACTATACTGTGCA-TTGCATCTCCAGGAAC-TATTTGTCT--ACTAGTTGCAAG
TTTGTAC-CTT-AAACAACAT-------------CTTTAAGA---AGATTCCCTTC--------TCCAGTTTGCCTTTCT
CA--TTCTCTCTTCTGTCTTTCAGGCAGATACATTCTCCAGTGTTTTTGTTCCA
>Myotis_myotis
AAACCAA--AACAAATAATAGCTCTACAAAGGGAGTACCTCCCAGCAGCATCCTTTCACCAAAAGAAACTTCACTGCAGA
AATAGAAATA-----TTGTCT---------GT---GTTTCATTTAA------------TGT-AACGTTGTGTAA-TTTAA
C--AAGAAAAACATGTTGATTTGAT-ATGTTTATGT-ATTGTAATAAAATCGCTGTTGGAGC-TATAGTTGG--CACCCC
TA-----TCACACAATTATCAGTTCTT--TTTGGGGTTGGACTACTTAAGATCTAGACTCTC-TGTGAGTTT---GACTA
-CAGTGCAATATTTTTGTCTATGTTCACTAGACTGTGCA-CTAGCTCTCCAGGACC-TGTTTGTCT--CCTAGTTGTGAG
TCTGTACACT---AAC--CAT-------------CC--AGGACACAGAGTCCCTT-----------------------CT
CATTTTCCCTCCTTTTTTTTTTTGACAGACACATTCTCCAACATTTTTGTTCTG
>Rousettus_aegyptiacus
AAACCAA--AGCAAGCAATATCTCTACAAAGAGAACACATTCCAGTAACATACTTTCAACAAAAGAAATTTCATCGCAGA
AACAGAAGTAGACGATTGTTC--------TGT---TTTCTA-TTAAATATATTTGACATAT-AACATTATGTAA-TTTAA
G--GCATAAAACATGTTGATTTGAT-GCATTTATAT-GATATAAGAAGATTGCTGTAGCAGT-TGTAGTTAGCACACCTC
TAGCATGACACAAAATTAATATTTTTTTGTGTGTGGTTGGAATAATTAAGATCCAGAGTCTT-AGTAAGTTTGATGACTA
-CAATACAGTACCGTTGTCTATATTCACAATACTATGCA-TTAGATCTCTAGGACC-TATTTGTCT--ACTAGTTGCAGG
TCTGTACCCT--AAACAACAT-------------TC--AGAACATGGATTCCCTTCTGAGTCCATGTGGTTTGCTTTTCT
CACTTTTTCTCTTTCGTTTTTCAGACAGATACATTC-CTAACA-TTTTGTTCCA
>Condylura_cristata
TAGCCAA--CAGAAG----GTCTTTACAGAGGGAGTACATTTCAGTAACAC----TCACCAAAAGGAACTTCAGTGCA--
----------------------------TTGT----TTTTATTG--GTTTTTTGGCCTCAT-AACACTATGTGCATTTAA
---GTGTAAAACATGGAGATTTGAT-ACACTTACAG-ATCACAATGTGATTAGCACTGA---------------CACACC
TGTCATGCC-----ATTATCATTTCTTT-TTTGCTCTTGGAATAATTAAGATCTAGACTCTTGAGAAAGCTGGATGATTA
-TCATTTGACAGTGTTGCCCATGTTCGCTCTACTATTCATTTAGGTTTCTAGGGCC-TACTTGTCC--ACTAAGTACAAG
TTTGTACCCTT-AAACAATAT-------------CT--GGGAGACAGATTTCCTTCC-------TGCAGTTTGCCTTTCT
CA------TTCTTCTGTCTCTCTAACCAATACATTCTCCAATGATTTTTTT-CA
>Uropsilus_gracilis
GAACCAAGCAAGGAC----ATCTCCACAGAGGGATCACATT-CAGCATCATACTTTCACCAAAAGGACCTTCCTTGTG--
----------------------------TTGCTC--CTTTA--AAAATATATTTGTCCTCT-AACAATATGTAA--CTAA
---GTGTGAAACACGTAGATTTGAC-ACATTTAGATGATCACATTGTGATTGTCGTTGTAACAAATAGCTAG--CACTTG
TAGCACATCGTGCCATTTTCATTTCTTT-TCTGCTCTTGGAA----TAAGATCTAGATTCTT-AGCAAGTTGGAAAAGTA
TTAACATGTCAGTTTGGTCCATAGTCACTCTATGGTGCATTTAGATTTCTAGGACC-AATTTGTCC--ACTAGGTACAAG
TATGGATCCTT--AACAATAT-------------CC--GGGAAACAGATTTCCTTCT-------TGCTGCTCGCCTTGCT
CA------TCCTTCCATCTTTCAAGCAAGCACATTCTCCAG-GTTTCTGTTCCA
>Sus_scrofa
AAACCAA--AATAAGTCATATCACTACAAGGGGG-TACCTTCCAGAAATATACTTGCACCAAAAGAAACTTCTTTTCAGA
AACAGAAATAGGGA--TGTTC-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------CC--AGGACTCAGGATGCCCT----------------------TCT
CA--CTTTCTCTTC----TTTCAGGCAGACACACCCTCCCACATTTTTATTTCA
>Bos_taurus
AAACCAA--AATAAGGGATATCATGACAAGGGAGATAGATTCCTGAAACACAGTTTCACCAAAAAAAACTCTACTGCAGG
AATGGAAATAGCGT--TGTTC-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------CC--AGAACGTGGATTCCCTTC--------TCCAGTTTACCTTTCT
TG--CTTTCTCTTTTGTCTTTCAGGCAGACACATTCTCCAACATTTTTGTTTCA
>Homo_sapiens
AAACCAA--AATGAGTAATATCTCTGCAAAGAGTATACATTCCAGCACCACACTTTCACCAAAAGAAACTTTATTGCAGA
AATAGGTCTAAAGA--TGTTT-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------CC--AGGACACAGATTCCCTTC--------TCTACACTGCCTTTCT
CA--TTCTGTCTTCTGTCTTTGAAGGAGACATATTCTCCAAC-CTTTTGTTCCA



Bat219_LINE

>L1MA9_3END
----------------------------------------------------------------------------TAGA
TCTTAAGTGTTCTCACCACACACAAAAAAATGGTAACTAT--GTGAGGTGATGGATATGTT-------------------
------------------------AATTAGC-TTGATT------------------------------------------
--------------------------------------------------------------------------------
------------------------------GTGGTAATCATT---------TCACAATG-----TATACGTATATCAAAA
CATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATA----AAGCTGG-----AAAAA--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------
>Canis_familiaris
ACATTTTTTTCAGGATCTTCAATATATC--TTTTGATAGCAAAATT-ACAA--GTT---AAAAACTATTT----------
----AAGAGATCTTATCACAGGAAAAAAAATTATAACTAT--GTATGGTGATAGATGT----------------------
------------------------AACTAGA-CCTATT------------------------------------------
--------------------------------------------------------------------------------
------------------------------ATGGTAATCATTT--------TTGCAATA-----TATACAAATACCAAAT
CATTGTGTTGTAAACCTGAAACTAATGTAA-TGTTATAAGTCAATTATGCCTCAA------ATTCTTT-----AAAAAAT
A-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-TTTCCC---TGCATCTTACATTATTGATAGTGTATACAT----TTTTTGCTTATTGCTCCAAT
>Felis_catus
ACA-TTTTTTCTGTATCTTCAATATATC--TTTCAGCAGCAAAATT-ACAA--GTT---AAATGTGAGTTCTT-------
----AAAAGATCTCATCACAAG-AAAAAAATTATAACTAT--GCATGGTGACAGATGCT---------------------
------------------------AACTAGA-CCTATT------------------------------------------
--------------------------------------------------------------------------------
------------------------------GTGGCAATTACTTTGCATGTATTGCA--A-----TATGCAAACATCAGAT
CATTATGTCATACACCTGAAGCTAATATAA-TGTTATATTTCAATTATACCTCAATATTTTACTTTTTTT---AAATTTT
CTTAATGTTCACTTATTTTTGAGAGAGAGACAGACAGACAGACTGCGAGTGAGGAGGAGCAGACAGAGAGAGGGAGACAC
AGAGTCCGAAGCAGGATCCAGCTCTGAACTGTCAGCACAGAGCCCATTGCGGGACTTAAATTCACTAACCACAAGATCAT
AACCTGAGCTGAAGTTGGACACCTAACCGACTGAGCCACTCAAGGTGCCCCATTTATAGCTCAATTTCTTTTAAAAAATG
ATTTCCT---TGAATCTTATATTATTAGTAGTATTTAAAA----TTTTTGCTTGTTCCTCCAAT
>Manis_pentadactyla
ACA-TTCTTTAATTATCTTCA-TATATC--TTTCAATAGTAAAACT-GAAA--ATT---AAACATGATTTCTT-------
----CAAAGTTTTCATCAGAAGAAAAAAATTTGTAACTGC-GTTATGCTGGTGAATTTT---------------------
------------------------AACTAGG-CTTATT------------------------------------------
--------------------------------------------------------------------------------
------------------------------GTAATGATCATT---------TTGCAATA-----TACACAAAT-------
-ATTATGTTGTACACCTGAAACTAATATAA-TGTTCTCTGTCAAGTGTACTT---------ATTTTTTT----AAATTGA
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-TTTCTC---TGCATTTTATATTATCAATAGTATTTTGAT----TTTTTGCTTGGTACCCCAAT
>Sus_scrofa
ACA-TTCTTTCCTTGTCCTCCTGTCCTCAGTTTCAACAG-AAACTT-TCAA--GTT---GA---TGATGTCTT-------
----CAAATTTCTCATCGCAAGAAAAAAAAAT-TAACTGT--GTATGGTGATG----CT---------------------
------------------------ACCTAGATTTTATG------------------------------------------
--------------------------------------------------------------------------------
------------------------------GTGATAATCATT---------TTTC--TA-----TGCATAAATATTGAAT
CATTATGTTATTAACCTGAAACTAACATAA-TGTTTTATGTCAATTGTACATCAATA----------------AAA----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---TCTC---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>Bos_taurus
ACA-TTCTT-CATTATCCTGA---------ATTCAACAG-GAAACT-ACAAATTTT---AAATATGATGTCTT-------
----AAAATTTCTCATCATAAG-AAAAACGTTATAACTGT--GTATGGTGACGGAGGCTTCCCTCGTGGCTCAGATGGTA
CAGCTTCTGCCTGCAGTTCGAGAGACCTGGATTCAATCCCCGAGTCGAGAAGATCCCCTGGAGAAGGAAACGGCAACCCA
CTCCAGTATTCTTGCCTGGAGAATAACCTGGTCGGAGGAGCCTGGTGGGCTACTGTCCATGGGGTTGCAAAGAATTGAAT
GCGACTGAGTGACGTCATTCACTTTTCAGGGTGATAGATATTAAGC-----TTATAGTAATGATCGTATAAATACTGAAT
CATTATGTTATATACCTAAAATGAATATAA-TGTTATATGTCAATGGTACCTCAATTAAA-------------AAAATGA
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-ATCCTC---TGAGTTTTAAATTACTAACA-TTTATATATATA-TTTTTGCTTTTGACTGCAAT
>Myotis_myotis
AGA-TCCTTTCCCCAGCTTCAATACACC--ACTCAACAAGAAAAAT-GCAC--TTT---AAACATGAGCTATT-------
----AAAAGTTCTCATCACA---ACAAAAATAATAACCATGGGTATGGTGATGGATAGT---------------------
------------------------AACTAGA-TTTATT------------------------------------------
--------------------------------------------------------------------------------
------------------------------GTGGTGATCTTT---------TTGCAATA-----TATACAAATATTAAAT
CATTATGGTGTACACCTGAAATGAATATAG-TGTTATAGATCTGTTATATTTCAATT----------------ATTTT--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-TTTCTC---TGCATTTTATATTATTAGTAGTGTTTTAATAC--TTTTTGCTTGTTAAACCAGT
>Rhinolophus_ferrumequinum
GCA-GTCCTTCCTTAGCTTCAACGTATC--TTTCAACAGGAAAACT-GCAA--GTT---AAATA--CTT-CTT-------
----AAAAGTTCTTATCACAAGAAAAAA-----CAATTAT--GTGGAGTGATGGATTTTA--------------------
------------------------AACTAGA-CTTATC------------------------------------------
--------------------------------------------------------------------------------
------------------------------ATGGTGATCATT---------GTACAATA-----CATAGGAATATTGAAT
CATTGTGTTGTACACCTGAAACTAGTATAA-TGTTAAATGTCAATTATACCTCAACT----------------AAAAAAA
TGA-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--TTTTC---TGCATTTTATAGTATGAATAATATTTAAAAAT--TTTTTGCTTGCTACCCCGAT
>Equus_caballus
ACA-TTCTTTCATTATCCTCAGTATATT--TTTCAACATTAAAACT-GCAA---AT------CATGATTTCTC-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------TGCATTTTACATTATTAACAGTATA---------TTTTTTCTTGTTA---CAAT
>Ceratotherium_simum
ACA-TTCTTTCATTATCTTCAATATATC--TTTCAACATTAAAACT-GCAA--GTT---GATCCTGATTTCTC-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------TGCCTTTTATATTATTAATAGAATTTTAATATT-TTTTCGCTTGTTACCCCAAA
>Condylura_cristata
ATG-TTGTTTCATCACCTCCAATATATC--ATACAATAGGATAATAAAAAA--GTT---AAACA--ATTTCTA-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------TTCATTTTATATTAATAGTA--------------TTTTACTTTGTTACCCCAAT
>Solenodon_paradoxus
ATA-TTCTTTCATTATCTTCAATATGTC--TTTCAGCAGGAAAAC-AGCAA--GCA---AAACATAATTCCTC-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------TGTGTTTTATACTAATAATATTCTTGTA------TTTTTGCTTATTACCACCAT
>Cavia_porcellus
ATA-TTCATTTATAATATTCAATATAGC--TTTCAAGATGAGTACTAGAAA---TT---AAACATGCTTTCTC-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------TGTATTTGATACAGTTAAAATTACTTTAATTTTCTTTTTGCTTCTTTCAACAAT



Bat235_LINE

>L1MA9_3END
--------------------------------------------------------------------------TTTTTC
CAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTAT-ATATTTAAGGTGTACA-ACGTGATGTTTTGATATACGTAT
ACATTGTGAAATGATTACCACAA-TCAAGCTAATTAACATATCC-ATCACC-----------------------------
---------------TCACATAGTTACCATTTTTTT------GTGTGTGGTGAGAACA----------------------
---------------------------------------------------------------
>Canis_familiaris
GGAATACTCTCCATGCTTATGATGGAATATAAGAAGGAAAT--ACCAAAACA-----TTATTTTCCTTTCT--------T
TTTTTTAATTAAAATATAACAGACATAG-AACACTGTGGAAAGTTTAAGATATACA-ATGTGTTGATTTGGTACACTTAT
ATATTACAAAATGATTACTATAG-TAGTGTTAGCTAAAACCTTT-ATCATG--------GGGCTGGGGAATTAGGGAGAT
GTTT------------------------ACTA--GTAG----ATAAATTCTGGAG------TTCTTTTTTCCTGTCT---
AATCCTTCCAAGG------AGTTCCTGATAC--AATGTGCCTTGGATAATTTAAAACTGTAAC
>Felis_catus
AGAATAGTCTCCATGCTTACGGTGGAATATAAGGAAGAAAC---ACAAAACA-----TTCTCTTCCCTTCT---------
-----AAATTAAGATAT------------AACACTGTGG-AAGTGTAAGGTGTACA-ATGTGTTGATTTGATACAC--AT
ATATTACAAAATGATTACTACAG-TAGTGTTAGCTAACACCTTTAATCATG--------GGGCAGGGGAATTGGGGAGAT
GTTG------------------------TTTACTTTAG----ATAAATTCTGGAG------TTC---TTTCCTGTCT---
AATCCTTCCAAGG------AATGCCTGATAC--AGTGTATCCTGGATAATTTAAAACTGCAAC
>Manis_pentadactyla
GGACTAGTATCTGTGCTTATGGTTGTAT-TAAGGCACAAAT--AACAAA-AA-----TTCTTCTTCTT-TT---------
-----AAATCAAGATATAACTGACATGT-AACTTTGTGT-AAGTTTAAGATGTACATATGTGTTGGTCTGATGTATTTAT
ATATCCCAAGATGATTACTACCGTTACTGTTAGCTACCACCTTT-ATCAGG--------AACTGGGGAAATTGGGAAGAT
GTTAAGG--------GTACAAACTTAAAACTA--GTAGGAA-AAAAGTTGTGGAG------CTCTCCTTACCTTTCT---
AATCATTCCAGCAG-----AGCACCTGATAT--AGTACGCCTTGGATAAGAAAATACTGCAAC
>Sus_scrofa
GGAATAGGTTCTGTGCTTACAGTTGAACACAAGGCAGAAAT--GCCGAAAGA-----CTCTTTTCCTTTTC---------
--TTTAAATTGAGATGGAACTGCCACAC-GAGACTGT---AAGTGTAAGGTGGACG-GCGTGTTGATG------ATTTAT
ATACGGCCGGCTGATGGCTACAG-CAGGGCTAGTTAACACCTCT-ACTGCAGGCGGGCCGGGGGGGGGAGTTAGGGAGAT
GCTGTTAAAAG----GTACAAACTCGCATCTG--GCGGAAAAATAGGTTGTGAAG------TTCTCTTTTCCTTTCT---
AATCCTTCCAAAG------AGTCCCTGGTACTGAGCACGCCTTAGAGAACTGAAAGCTGCAAC
>Vicugna_pacos
GGAATAGTCTCCATACTTATGGTTGAATATAAATATTCTCTATACCAAAACA-----TTCTTTTCCTTTCT--------T
TTTTTTAATTGTGATGTAATTGACATAT-AGCATCATGT-AAGTTTAAGGCAGACA-GCGTGTTGATCTGATACATTTAG
ATATTGCAGTGTGATCACTACAG-TAAGGCTAGCTAGTACCTCT-ATCCTG--------GGGTGGGAGAACCAGAAAGAT
ATTAAACA-------GTACAAAGTTGCAACTA--CGAGATA-GTAAGTTCTGAAG------TTCT--TTCCCTTTCT---
GATCCTTCCAAAG------AGTACCTGATATAGAGTATGCCTTGGATAATTAAAAACTGCATC
>Myotis_myotis
GAA--AGTCTCCATGCTTATGGTTGAATATAAGGCAGAAAT--ACCAAAACA-----TCCTTTTCCTTTTT---------
---TGAAATCGAAATTT----GACATAT-AACAT-------AGTTGAAGGTGTACA-ATGTGCTGGTTTGATACACTCAT
ATGTTGCAATATGATTGCTAAGG-TAGAGCTAACTA----CTCT-ATCAGG--------AG--TGGGAAATTGGAAATTC
GTTGTGTATGGGTCCATACAAACTTACAGCCA--GTAGGTAAATAAGTTCTGGAG------TTCTCTTT--CATTCT---
AATCCTTCCAAAG------ACTACCTGATATAGAGT---------ATAATTAACAACTGCAAC
>Rousettus_aegyptiacus
AGAATAGCCTCCATGGTTATGACTGACTGTAA--CGGAAAT--ACCAAAACA---TTATTTTTTTCCTTTT---------
----TTAATTGAAATATAATTGACATAC-GACATTAGGT-AAATTTAAGGAGTACA-ATGTGTTGGTCAGACACACTTAC
ACACTGTAATGTAACTGCTACAG-TAGAGCTGGC----ACCTTT-ACCATA--------GGGTGGAGGAATTGGGGAGAT
GCTATTTAAGG----GTACCAACTTGCCACTA--GTAGATAAACAAGGGCTGGAG------TTCTCTTTTCCT-TCT---
AGTCCTTCCAAAG------ACTACCTGATATAAAGTATACCTTA-ATAATTAAAAACTACAAC
>Equus_caballus
GGAATAGTCTTTGTGCTTATGGTTGAAT-CAAGGCAGAAAT--ACCAAAACA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------TC---TTTGCCTTCCT---
ATTCCTTCCCAAA--------------AGGTACAGTA---CTTGGCTAATTAAAAACTGCAAC
>Ceratotherium_simum
GGAATAGTCTCTGTGTTTATGGTTGAATATAAGGCAGAAAT--ACCAAAACA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------TCTTCTTTTTCTTTCT---
AATCCTTCCCAAAAGGTACAGTACTTGATATACAGCACGCCTTGGATAATTAAAAACCGCAAC
>Condylura_cristata
GGA--AGTCTCCCTGTTTACAGTGGAATATAAGGCAGCAAT--TCC---ACA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------CTTTCTTTCCCTTTCT---
CATCCTTCCAGAT------AGTGTTTGATACAGAGTTGGCCTTGGAT------------CATC
>Scalopus_aquaticus
GAA--AG----AGTGTTTACAGCTAAATAGAAGGCAGCAAT--GGCACAATC----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------TTTTCTTTTCCTTTCT---
CATCCCTCCA----------------GATATAGAGTAGGCCTCGGAT------------AATT
>Homo_sapiens
GGA-TAGTCCCTGTGCTTATGGCTGAATATCGGATAAAAATA-ACCAAGATA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------TTCTCTTTTCCTTTCT---
AATCCTTCCACAA------AGTACCTGATTTACAGTATGCCTTGGGTAACTGAAAACTGCAAC



Bat240_LINE

>L1MA9_3END
----------------------------------------------------------------------GATCTTAAGT
GTTCTCACCACA-------CACAAAAAAA---TGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTA
ATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATAC
CTCAATAAAGCTGGAAAAA-------------------------------------------------------------
----------------
>Sus_scrofa
ATAATTTTAAGCACCAATTATATGCA-AGAGTAAGGTTACCTCTGTT---AAAAGTAACATTGACAG-------------
---CTCATCACATCATACACACATAAAAGATTGTGTAATTATGTTTGATGATGG--ATGTTAACTATACTTACTGTGATG
GTCATTTTGCAATATATATAAATATTGTATCATTATGCTATATACCTGAAACTAATATAA-GATTATATGTCAATTATAT
GTCAGTA----TGAAAAAAAA---AGAGGTAACCTTGGCAG---AGTGC-AAAATGCTGCATAGAGGCCCTCAGACCACT
CCTGAGGAC-TTTGGA
>Bos_taurus
ATAATTTTAAGCACATACTATGGGCCAAAGGTAAAATTATGTCTGTT---AAGTATAACGTTGACAA-------------
---TTCATCACA---TGGCAAGGAAAAAATTTTTGTAGCTAT------TAAT----ATGTT--------------TGGTG
GTCATTTTGTAATATATGCAAATAGTGAATCAT--------------------GTTATAA-CGTTCTTTGTCAATTTTAT
CTCAATA---CAACAACAACA---AAA-GTA-TCT-GAGAG---AGTGA-AAAATACTACAAAGAAGCCCTTGGATCACT
CCTGAGTTC-TTTGGA
>Equus_caballus
CTAATTTTAAGCACCGACTAAGTGCC-AGGGTAGGGTTACATCCATT---AGAAGTAATCTTGGCAG-------------
---CTCATCACA------AGAAAAAAATAAATTTGTAACTAAGTGTGGTGAGGG--ATGTTAACTACACTTACTGTGGTG
ATCATTTTGCAGTATATACAAATACTGAGTCATTATGTTTTAC-CCTGAAAC---TATAA-TGTTATATGTTAATTATAT
CTCAAT-----TTAAAAAAAA---AGAAGTAATCTTGGCAG---AGTGA-AAAACGCTGCACAGAGGCCCTTGGACCCCA
CCTAAGGACCTTTGGA
>Ceratotherium_simum
CTAATTTTAAGCACCTACTATGTGCC-AGGATAGGGTTACATCCGTT---AGAAGTAACCTTGGCAG-------------
---CTTATCACA----AGAAAAAAAAGAAATTTGTTAACTATGTATGGTGATGG--ATGTTAGCTACACTTATTGTGGTG
ATCATTTCCCAATATATACAAATACTACATCGTTATGTTTTATGCCTGAAACTAATATAG-TGTTATATGTTAATTATAT
CTCAAT-----TAAAAAAAAA---AGG---AACCTTGGCAG---AGTGA-AAAATGCTGCACAGAGGCCCTTGGACCACT
CCTAAGGACCTTTGGA
>Myotis_myotis
ATAATATTAAACAGCTCCCATATGTC-AGGGTAGGGTTACATCCATT---AGAAGTAAACTTGGCAG-------------
---CCTATCATA----AGAAAAAAAAAAAATC---TAACCATGTATGGTGATGG--ATGCTAACTACACTTATTTTGGTG
GTCATTTTTCAGTATGTACAAATATTGGATCATTATGTT-TATACCTGAAATTAATATAA-TGTTATATGCCAATTATGT
ATCAAT-----TATA---------AAAGGCAACCTTGACAG---AG--A-AAATTGCTGCACAGAAGCCCTTGGATCTCT
CCTAAGGACCTTTGGG
>Rousettus_aegyptiacus
ATAATTTTAAGCAGCTACAATATGCC-AGGGTAGGGTTACATCCATT---AGAAGTAACCTCGACAG-------------
---CTCATTACA----AGAAAGAAAAAAA------CAAC-ATATATGGTGATGG--ATGTTAACCACCTTTATTGTGGAG
ATCATTTTGCAATATATACAAATATTGAATCATTATGTTGTACACCTATAGCTAACATAA-TTTTATATGTCAATTGTAC
CTTAAT-----TGGAAAAAA----AGAAGTAACTTTGGCAG---AGTGA-AAAATGCTGCACAGAAGCCCTCAGACAACG
CCTAAGGAC-TT-GAA
>Canis_familiaris
ACAATTTTAAGCACCAGCTGTGTGAC-AGGTTGGGGTTATATCTGTT---GGAAATAACCATGGCTA-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------AGTGA-AAAATACTGCACAGAGG-------------
-------ACTTTCAGA
>Felis_catus
AT--TTTTAGGCACCTACTATGTGAC-AGGGTAGGGTTATATCTGTT---AGAAATAACCTTGGCAC-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------AGTGA-AAAATACTGGACAGAGGCCCTTGGACCACT
CCTCAGGACCTTTGGA
>Manis_pentadactyla
ATAATTTT-AGCACCTATTATGTGCC-AGGGTAGGGTTACATCTCTT---ACATGGAACCTTGATAG-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------AGTGAAAAAATTCTGCACAGAGG-CCTTGGACCACT
CCTGAGGACCTTC--A
>Condylura_cristata
ATGA-GTTGAGCACCTACTATGTGCC-AGTGTAGGGTTACAT-TGTT---AAAAATAATCCT-ACTA-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------AGTGG-AAAATGCTGCATAGAGATCCTGGGACCA-G
CCTAACGGTCTTTGGA
>Sorex_araneus
ATGATTG--------------------AGGGTAGGATGACATTTATT---AGAGAAGATCTTGGCTG-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------AGAGG-AA---GCTGTATAGAGACCATTAGATCACT
CCTAAGGACCTTGAGA
>Homo_sapiens
ATGATTGTAAGCATCTATTATGTGCC-AGGGTAGGGTTATATCCATT---GTAAGTAACCTTGGCAG-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------AGTAA-AAAATGCTGCACAGAGGCCTGTGGACCACT
CCTAAGGACCTTTGGA



Bat241_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
---------------------------------------TTTTTCCAGCTTT----------ATTGAGGTATAATTGACA
AATAAAAATTGTATATATTTAA----GGTGTACAACGTGATGTTTTGATATACGTATACATTGTGAAATGATTACCACA-
----------ATCAAGCTAATTAACATATCCATCACCTCACATAGTTACCATTTTTTTGTG-------------------
--------------------------------------------
>Canis_familiaris
CTTGGGACATGG-----CTTCCC-ACAGAGCAAGTGGTT--TGAGGG----CCAGAAGCCAC---ACTC----------T
TC---ATTTTTTGC----------------CTTTAAAAAAAAATTTATTTTTTTA-------ATAGAAATATATTTGACA
T---AAAATTGTGTAAATTTAA----GGTATA---CGTGTTGATTTGGTTCATCGATATATTGTA--ATGATTACCATT-
----------GTAGACACGATTTGCACCTTTATCAGGTC-CATACTG-CCTTCT----------ATCCCCT---CATCTC
AGAAGTGACATACCACCGCTTTTGCCATATACTGTTGGTTACAC
>Felis_catus
CTCGTGACATGG-----CTTTCCCCCAGAACAAGTGGTC--TGAGAGG----CAGAAGCCAC---ACTC----------T
TT---TTTG---------------------TTTTTAAATTTTATCTATTTTTT---------ATTGAAATATATTTGACA
TAT-AACATTGCGTAAAGTTAAGTAAGGTATACACCATGTTGATTTGACTCATT--------------------------
--------------------------------------------------------------------------TGTATC
AGAAGTGACATACCATCACTTCTGCCATATTCTGTTGGCTACAC
>Manis_pentadactyla
CTCATGACATGGCTTCCCTTCCC-CTAGAGCAAGTGATC--TG-GAAAGAGCCAGAAGGCAC---ACTG----------C
CG---TTTTTTTTTGTGTGTGTGTGTGCCTTTTAAAAATCTTAGTTGTTTTT----------ATTG--ATCTGTTTGTTT
TAT-AACATTGTGTAAATTTAA----GATATATGACATGTTGTTTTGATACATT---ATGTTGTA--ACAGTTCTCATTA
CTGTAATACAGTAGTGTTTATTAGCACCTCTATCACATC-CATGCTG-CCTTTT----------AAAACCT---CATCTC
AGAAGTGACATACCAACAGTTTTGCCATATTTTGTTGGTTACAC
>Sus_scrofa
TGTATGACATGG-----CTGGTCCCTGAAGTAGGTGATC--CAAGAGAAA--CAAAGGCCAT---ACTG----------C
CT----------------------------TTGTTTGCCTTAAGCGATTTTCATT-------ATAGAACTACATTTGACA
TAT-AATGTTGTGTAACTTTAG----GGTATATAATATGTTGATTTGATAGATTTATAAATTGTAGTATGATTCCCATT-
----------GTAGCAATGATTAGCTCTTCTATTGTGTC-CACACTT-CTTTTT----------ATAAC-----TACCTC
AGAAGCAACAGTATGTCATTTTGGTTGTATTCTGTTTGTTACAC
>Bos_taurus
CTCATAACATGG-----CTTCTCGCCAAAGCAAGTGATC--TGGAAGAAAGCCAGAAGTCAA---ACTC----------C
CT---TTTTTTTCCC---------------TTTAAAAAATTTATGTATT-------------ATTGAAATATATTTGACA
TAA-AACATTGTGTAACTTTAA----GGTATATAACAC--TGATTTGATACATC----AGGTGTAATAAGATTGCCATT-
----------GTAGTGATAATTAGCACTTCTGTCACGTC-CACC----CTTTTT----------ATAACCT---AAACTC
A-----GATTTACTGTTACTTTTACTGTGTTCTCT--GTTACAC
>Equus_caballus
CTCATGACATGG-----CTTCCC-CCAGAGCAAGTGATC--TGAGGGAG--CCAGAAGCCAG---ACTG----------C
CT----------------------------TTTGAAAAATTTATCTATTTGTTTT-----TTATTGAAATGTATTTGACA
TAT-AACCTTGTGTAAGTTTAAG---GTTATACAACATGTCAACTTGATATATTTATATATAGTAATATGATTGCCATT-
----------GTAGTGATAATTAGCACCTCTATCACGCC-CACA-TG-CCTTTT----------GTAATCT---AATCTC
AGAAGTGCCATACCGTCACTTTTGCCGCATTCTGTTGATTACAC
>Ceratotherium_simum
CCCATGCCATGG-----CTTCCC-CCAGAGCAAGTGATC--TGAGAGACAGCCAGAAGCCAC---ACTG----------C
CT----------------------------TTTTAAAAATTTATCTATTTATTTT-----TTATTGAAATATATTTGACA
TAT-AATATTGTGTAAATTTAAT---TGTGTAAATTTATACAACTTGATACATTTATGTATTGTAATATGATTGCCATT-
----------GTAGTGATAATTAGCACCTCTGTCACGTC-CACATTG-CCTTTT----------ATAATCT---AATCTC
AGAAGTGACATACCATCGCTTTTGCCATATTCTGTTGGTTTCAC
>Myotis_myotis
CTCATGACATGG-----TTTCCC-CCAGAGCGAGTGATC--TGAGAGA----CAGAAGCCAC---ACTG----------C
CT----------------------------TTTAAAAAATTTATCTACTTATTTAATTTTTGATTGTAATATGCTTGACA
TA------TTGTATAAATTTAA----AGTGTACAACATATTGATTTGATACATCTATACATTGTAATATGATTGCCATT-
----------GCAGTGATAA-TAGCACCTCTATC---TC-CACA-----CTTTT----------ATAACCT---AACCGC
AGAAGTGACATACCGTCACTATTTCCATATTCTGTTGGTTACAT
>Rousettus_aegyptiacus
CTCATGGCATGA-----CTTTTC-CCAGAGCGAGTGATC--TGAGAGAGATCCAGAAGCTGC---ACTG----------C
CT----------------------------TTTAAAATATATATTTTATTTTTAA-------ATTGTAATATATTTGACA
T---AATGTTGTACTTATTTAA----GGTATACTACATGTTGAATTGATATATCTATGTATT-----ATGATTGCCACT-
----------GTAGTGATAATTAGCACCTCTATCAAGTC-CACACTG-CCTTTT----------ATAACCT---AATCTC
AGAAGTGACATTTTGTCACCTTTCCCATATTCTGTTGGTCACAC
>Condylura_cristata
CACATGATACAG-----CTTCCC-CCAGAG---GTGGGA--ACAGAGAGAGTCAGAAGCTG----ATAA----------C
TT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------CATCTC
AGAAGTTTCTTACTA----TTTTGCCACATTCTGTTGGTCACAC
>Solenodon_paradoxus
CTCATGACATGG-----CTTTCC-CCAGAGGAAATGATC--AGAGAG----CCAGAAGC-AC---ACTGCCTTTTATAAC
CT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------AATCTC
AGACGTGACATACCATCACTTCTGCTATATCCTGTTGATGACAC
>Homo_sapiens
CTCATGGCATGG-----CTTCCC-CCAAAGCAATTGGTTAGAGAGAGAGAGCCCGAAGCCAC---AGTG----------C
CT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------AATCTC
AGAAGTGACAAATCATC-----------------------ACAC



Bat250_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------TGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTC
ACAATGTATACGTATATCAAAACATC--ACGTTGTACACCTTAAAT-ATATACAATTTTTATTTG--TCAATTATACCTC
AATAAAGCTGGAAAAA----------------------------------------------------------------
----------------------------
>Canis_familiaris
TCAGGAGGGATATCTCAGATATGACACCTAATCTGAG-TTCGAGAGACAATC---AGAAGCTACCTGA---TGGGG-TGT
AATGTACAGCACAATGAATACAGTTAACGAGACCATGTATTGTATATTTGAAAGTTGCTAAGGGAGTAGGTCTTAAAAAT
TC---TCGCAAG-AAAATAAAT--TGGTAACTAGTTGAAGTGATATA--TTTTAACTAAATGAATTATGATGATCATTTC
CCAATCTACACATACATCAAATCATTGCGTGTTGTATACCCTAAAAGTTGTGCAAT-GTTGTATGACTCACTTATATCTC
AATAAAACTGGAAAAAAAGGA-ATATAGGGGGG------AAAA-GATACCTGA---GGAAAAAAGCT-TCACTGAAGGAA
AAGAAAGAGCAAGTGAGAGAAAGCTTGA
>Felis_catus
TCA-GAGAGATTTCTCAGATATGAGACCTAAGTTGGCACTCGAGAGACAACG---AGACCTTACTTGA---TGGGGCTTT
GACATACAGCGTGATGACTGCAGTTAACAACACAGTATACTGTAGACTTGAAACTTGCTTTGTGAGTAGATCTTAACA-T
TCTCCTCACAGG-AAAAGAAAT--TGGCAACTATTTGAGGTGGTATC--TTTTAACTAAATGTATTATGGCGATCATTTT
ACCATCTGTATATATCTGAGACCATT--ATATTGTACACCTTAAAG-TTATGCAGT-GTTATAGGGGCCAATTATACCTC
AATAAAACCGGGGGAAAAAAGAATATGGGGGG-------AAAA-GTTATCTGA---AGGAAAAGGGTGTCAATG--GCAG
AAGAAGGAGCAGGTGCAGGAAGGCCAGA
>Manis_pentadactyla
TCAGGAGGGATTTCTCAGATAGGAGACCTAATCAGAGACTTGAGAGACCATT---AGG-TGTGTCTGA---TGGGGATAC
AGTGTATGTCGTGATGATCATAGTTAGCAACAC--CATATTGTATATTTCAAAGTTGCTAAGGGAATAAATCTTAAAAGT
TCGTATGGTAAG-AAAAAATAT--TTGTAGCTATGCGAGGTGATGGA--TGTTAACTAAGTGTATTATGATAATTATTTT
ATAATATACACTTATAGCAAGTCATT--ATGTTGTACACTTTAAAC-TTATATAAT-GTTATGAG--TCAA-TATATCTC
AATAAAACTGGAAAAAAAGAAGACAGAAAAAAGAA----AGAA-GTTATCTGA---AGGAAGAGG----TATTA--ACAG
AAGAAAGAGCAAGTGAGGAAAGGCTTGC
>Sus_scrofa
TCAGGAGGGATTTCTCAGCTATGAAACCCAAGCTGAGACTCGAGAGACAATT---GGAGGTTTTCTGA---TGGGGATGG
AACATACAGCAGGATAACCACAGTCATCAGCAC--TGTGTTGTGTGTTTGAAAGTTGCTAGGGGACTAGGTCTTAAAC-T
TCTCATCACAAGAAAGAAAAATGCGTGTAACTCTGTGAGGTGATGGA--TGGTAACTAAAC--ATTGTGGCAATCATTTC
ACAATATATA--TTTACCAAATCCCT--ATGTTGTACAACTCAAGC--------AT-GCCTTATG--TTGATTATGTCTC
CATAAAACTGGGGGAAATGC---CACAGGAAA-------AAAC-GTTTTCTGA---AGGAGAAGGTTATCACCG--GCAG
AAGAGAAAGCGCGTGAGAGACGGCTGGG
>Tursiops_truncatus
TCAGGAAGGATTTCTCAGAT--GAGACCCAAGCTGGGACTTGAGAGACAATT---AGAAGTTATCTGA---TGGGGATGG
AATATGCAACATGATAACTGTAGTCATCAACAC--TGTATTGTGTATTTGAAAGTTGCTAAGAGAATAGATTTTAAAAGT
TCTCTTCGCAAG-AAAAAAAAT--GTGTAACTATGTGAGGTAATGGA--TGATAACTAAACATATTGTGGCAATCATTTC
-CAATATATACGTTTATCAAATCATT--ATGTTGTATACCTTAAAC-GTATGCA------AAATG--TCAATTATATCTC
AATAAAACTGGAAAAAAATA---AAGGGAAAGAAA----AGAA-GCTATCCGA---AGGAAAAGGGTGTCACAG--GCAG
AAGAGAGAACAAGTGAGAGACGGCTTGG
>Equus_caballus
T-AGGAAGGATTTCTTAGATGTGAGACCTAAGCTAACACTTGAGAGACAATC---AAAAGTTATCTGA---TGGGGATGT
AATGTACAGCATGGTGACTATAGTGCACAACAC--TGTATTGGATA--------TTGCTAAGGGCATCGATCTAAAAAGT
CCACCTCAAAAG-AAAACAAAC--TTGTAACTATGTGAGGTGATAGA--TGTTAACTAAAGGTATTATGGTAATCATTTC
ACAACATATACAAAAATGACATCATT--ATGTTGTACACTTTAAAC-TTACACAAT-GTTATAGG--TTGTTTATATCTC
ATTAAAACTGGAAAATGAA----TACAGAGAAAAA----AGAA-CTCATCTGA---AGGAAAGGGATGTCATTG--GCGG
AAGAGAGAGCAAGTGAGAGGAGACTTGG
>Ceratotherium_simum
TCAGGAGGGATTTCTTAGATATGAGACCTAAGCTGGGACTGGAAAGACAATC---ACAAGTTATCTGA---TGGGTGTGT
AATGTACAGTGTGATGACTATAGTTCACAAAAC--AGTGTTGGATA--------TTGCTAAGGGAGTTGATCTTAAAAGT
TCTCATCACAAGAAAAAAAAAA--TTGTAACTATGTGAGATGGTAAA--TGTTAACTAAATGTATTATGGTAATCATTTC
ACAATATATACATATATTACATCATT--ATTTTGTACACTTTAAAC-TTACAC-------ATATG--TTGATTATATCCC
AATAAAACTGGAA----------TACAGAAAAAGAA---AGAA-ATTATCTGA---AGGAAAGGGGTGTCATTG--GCAG
AAAAGAGAGCAAGTAAGATAAGACTTGG
>Myotis_myotis
TT-GGGGGGATTTCACAGATAGGAGATCTAAGTGGGGACTTGAGAGATAATT---AGAAGTTTTCTGA---TAAGGATAT
AATACAC----TTATGACTATAGTTAATAC-----TGGCTTACATATTTGAACATGGCAAGGAGAATAGATCTTAAAA-T
TCTCATCACAAG-AAGAGAAATATATGTAACTATGTGAGTTGAT------------------------------------
----------------------------------------------------------TTATATG--TCAATTATATTTC
AATAAAACTGGAAAAATAAGA-ATACAG--AAAAA----ATAA-GTTATCTGA---AGGAAAAGGGTGTCACTG--GCCA
AAGAGAGAGCAAGTGCGAGAAGGCTTGG
>Rhinolophus_ferrumequinum
GCAGGAGGGATTTCTCAGATA-GAGACCTAAACTGGGACTTGAGAGACAATT---AGAGGTTATCTGA---CGAGGATGT
AATATACAGCATGAGGACTATAGTTAATGGCAC--TGTACTGGATGCTTGATAGTTGCTAAG-GAGTAGATCTTAAAAGT
TCTCATCACAAG-AAACAATGG--TTGTCGCTACATGGGGTGATGGA--TCTTAACTGATCATACTGTGTTAATCATTTT
GCAGTATATACACTTATGAAATC-----ATGTTATAGACTTTAAAC-TTGTACGAT-GTTATATG--TTAGCTATATCTC
AATAAAACTAGAAAAAGTAAGCATACGGGAAA-------AGAA-GTTACTTAA---AGGAAAAGGGTATCACTG--GCGG
AAGAGAGAGCAGGTGAGAGAAGGCTTAA
>Condylura_cristata
TCGGGACAGATTTGTCAGCTATGAGACCTAAGCTTGGACTTGAGAGACAATT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------AGAA--TTTGTTGA---AGTAAGTGAGTGTCACTG--GCAA
AAAGAATA----ATGAGAGCAAGCTTGG
>Uropsilus_gracilis
TCAAGACAGGTTTCTCAGATATGAGATCTAAACTTAGACTTGAGAAACAATT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------AGAA--ATTATTAA---AGGAATTGGGTGTTGCCA--GCAG
AAGGAGAA----AAGAGAGAAATTTTGG
>Homo_sapiens
TCAGGACAGATTTCTTGGATTTGAGATATGAGCTAGGACTTGAGAGACAATT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------AGAAAGTTATCTGG---AGGAAAAGGCTGTTACTG--GCGG
AAGAAAGGGCAAATGAGA--AGGCTTGC



Dog1_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--AAATGGGGAGATGTTGGTCAAAGGGTACAAAGTTT---CAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGTAC
AGCATGGTGACTATAGTTAATAATACTGTATTG-----------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------TATACTTGAAATTTGC
TAAGAGAGTAGATCTTAAGT-GTTCTCACCACACACAAAAAAATG-GTAACTATGTGAGGTGATGGATATGTTAATTAGC
TTGATTGTGGTAATCATTTCACAATGTA---TACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTT
ATTTGTCAATTATA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------CCTCAATAAAGCTGGAAAAA----------------------------------------------------
--------------------------------------------------------------------------------
----------------------
>Canis_familiaris
TTACTTAAGAATGGAAACTACCTCCTCTAATTTAATGTAAACATATACTT----ATAG-------ATG-TTTATTACTG-
-----------GAGGTTTATACCTTTTGACCACATTTACCCAGTTAT--AAAATAGAT--GTCTTAGGGATGTAATGTAT
AGCATGGTGACTATCATTAATAATACTGTGTTG-----------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------TGTATTTCAAAGTTCC
TGAG--AGTAGATCTTAAAA-GTTCTCATCACA---AAGAACATTTGCAACTGTGT--GATGATGG--ATGCTAACTAGA
CTTATTGTGATGATGA-TTCACAGCGTA---CACAAATACCAAATCCTTATGTCGTACACCTGTAACTAATATTATGCTC
-TATGCCGATAATA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------TCTCAAAATTTTTAAA-------GAAGGTATTTATTACTG---TTATAGT-TA---ATTTTTGTGTGTGTGT
G----------------------------------TGTGTGTGTATAAATGTGATGTA----------------------
-------------TGTTTTCCA
>Felis_catus
TTACTTAAGAATGGTAACCACCTCCTCTAATTTAATGTAAACACTTACTT----ATAG-------ATA-TTTATTACCG-
-----------GAGGTTTGTACCTTTTGACTGTCTTCACCCAGTTAT--AAAATAAAT--GTCATGGGGTTGTAATGTAC
AGCATGGTGACTGTAGTTAATGATACCGTATTGTAGGGGCTCTTGGGTGGTTCAGTTGGTTAAGCGTCTGACTCTTGATT
TTGGCTCAGGTCATGATTTCATGGTTCAGTTCATGAGTTGGAGACCTGCATCGGGGATTCTCTCTTTCCCTCTCTCACTA
CCCCTCCTCCCCTCTCTAAATAAACTTAAAACAAAACAAAACAAAACAAAAAAACCCACTGCATTGTATTTCAAAGTTCC
TGAG--AGTAGGTCTTAAAA-CTTCTCATCACAAGAAAGAACATTTGTAACTGTG-GGGGTGGTGA--ATGCTAACTAGA
CCTATGGTGGTGAT-------CAGTATA---CACAAATATGCAATCATTATGTGCTATACCTGTAGCTAATATAATGTTC
-AATGTCAATAATA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------TCTCAATTTTTTTAAA-------GAAGCTGTTTATTACTG---TTTTAGT-TATATATATATATATGTATAT
ACAGATATATATACCTGTATTATATGTAATATATTTTTTATATTATATATATAATATAATACACATATTATATATATATA
AAATAAATGTGACTTTTTTTTA
>Manis_pentadactyla
TTCTTTAAGAAGGGAAATCACCTGCACTAAGGTAATGTAAATAATTCAAT---TATAA-------ATGTTTTATTACTG-
-----------AAAGTTTGTACCATTTGACCACCTTCATCCAGGTGT--AAAATAAATAAGTCATGGGATTGTAGCATAC
AGCATGGCGACTGTAGTCAATAATACTGTATTG-----------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------TTTATTTGAAAGTTGC
TACAAAAATAGATCTTAGAC-ATTCTCATCACAAGAAAAAAAAT--GTAACT-------GTGGTGA--ATGCTAACAAGA
CCTGTTGTGGGGACCATTTTGCAATAGACACCACAAATATTGGATCATTATGTTGTAC------AACTAATATAGTGTTA
-CATGTCAATTATA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------TCTCAT--TTTTT----------AGAGGTATTTATTAGCA---TTTTAGT--ACAAATAATAATAA------
-----------------------------------TTATTTTTTGTAAATATGGTATA----------------------
-------------TGGATTTTG
>Sus_scrofa
TTACTTAAGAATGAAACTCACCACCACTAGTTTAATGTAAACATTTGCTT----ATGG-------TTG-CTTACTACTG-
-----------CAAGTTTGAATCTTTTGACCAGTTTTACACAGTTGT--AAAATAAATAAATCATGG-AACATAATGTAC
AGCATGGTGTTTATAGTTAATATT----TATTG-----------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------TATATGACAGTTAC
TTAGAAAGTAGATCTTAAAA-GTTCTCATCAAAAGAAAAAAAATGTATAACTACATATGGTGGTAG--AAATTAACTAGC
CTTATTGTGGTGATCATTTCACAATTTA---TACAAATACGGAATCA------GGTACACTTGAAACTAATATAATG---
-TATGTCAATTGTA------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------TCTCAA-----TTTAA-------AAAGATGCTGATTACTA---TTTTAGTCTAAAAATAT------------
-----------------------------------ACACTTTTTATAATTATAGTATG----------------------
-------------TAGTTTTTG
>Bos_taurus
TTACTTAAGAATGAAAATCACCCCCACTAATTTAATGTAAACATTTGCTT----ATAGCTGATAGCTG-TTTACTACTG-
-----------AAAGTTTGTACCTTTTGACCACTTTCATCCAGTTAT--AAAATAA------------GATAAAAT-TAC
AGCATGGTGATTATAGCTAATAATACTACATT------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------TATATTTGAAAATTAC
TTAG------TATCTTAAAATGTAATCATCACAAG-AAAAAAATATGTAACTATATAAGGTGGTAG--AAATTAACTAGA
CTTATC-TGGTGATCATTTTACAGTATA---TACAAATAT-------------TGTATACTTGAAACTAATATAATGTTC
-TATGTCAATTATGTGTGTGTGTGTGTGCCCCAGTCGTGTCTGACTCTGTGACCCCATGGACTATATCCTGCCAGGCTCC
TCTGTCCATGGAATTTTCCAGGCAAAAATCCTGGAGTGGTTTGTCATTTCCTTCTCCAGTGGATCTTCCCAACCCAGGGA
TCAAACCTGTATCTCTTGCATGTCCTGCATTGGCAGGCAGATTCTTTACTACTGAGTCACCTGGGAAGCATATAATATGT
CAGTTATATCTCAA------TTAA-------AAAGATGTTTACTAATG---TTTTAAT-TTCAAAAATGTA---------
-----------------------------------CATTATTTTGAAAATGTGATATA----------------------
-------------TAATTTTTG
>Equus_caballus
------------GGAA-ACACCTCTACTTATTTAATGCAAACATTTGCTC----ATAG-------ATG-TTTATTACTG-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------TTTTAGT-TACAGATAATCTG--------
-----------------------------------TTTTTTTTTGTAAACGTGGTATA----------------------
-------------TGGTTTCTG
>Ceratotherium_simum
------------GGAA-CCACCTCCACTAATTTAATAGAAACATTTGCTT----ATAG-------ACG-TTTATTACTA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------TTTCAGT-TACAAATAATCT---------
-----------------------------------TTTTTTTTTGGAAATGTGGTATA----------------------
-------------TGGTTTTTG
>Myotis_myotis
------------GGAA-CCACCTCTTCTAATTCAATGCAAACATATATGT----ATAG-------ATG-TTTAGTATGG-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------CTTTAGT-TACAAATA-------------
-----------------------------------ACTTTTTTTGTAAGTGTGGTGTA----------------------
-------------AGGTTTTTG
>Rousettus_aegyptiacus
------------GAAA-CCACCTCCACTAATTTAACAAAAAC-ACTTGCT---AATAG-------TTG-TTTAGTACTG-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------TTCTAGT-TACAAATA-------------
-----------------------------------ATTTTTTTTCTTTAAGTGTGATAA---------------------
-------------CTTGTTTTA
>Condylura_cristata
TTCCTTACAAATGGAAACTCCCTCCTTTAGCTTATTACAAATATTTGCTT----ATAG-------ATG-TCTATTATGC-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------TTTCAAC-TACAGATAACC----------
-----------------------------------CCTTTTTTGGTAAAAATAGTA------------------------
-------------TGTTTTTTG
>Sorex_araneus
TGACTCAAGAATGGAA-CGTCCTGCATTAAGCTAATGTGAACACTCATTT----ACAG-------ATA-TTTATTGCTA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------TTTTAGA-TACAAAGA-------------
-----------------------------------ATTTCTGTTGGTAACGTGGCCTA----------------------
-------------TTCCTTTTG
>Homo_sapiens
TTACTTACAAAAGGAAACCACCTCCACTAATTTAATGCAAACATTTGCTT----ATAG-------ATG-TTTGTTACTG-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------TTTTAGT-TGAAAATATTT----------
-----------------------------------TTTCTTTTTGTAAATGTGGCATA----------------------
-------------TAATTTTTG




Dog1_LTR

>LTR109B
-------------------------------------------------------------TGTTAAAATCAAANACAAA
TGGAGACCAGCCTTGAAAATTCCCTGAGC-AGAC-AAAACCAGTTTAGTCATACAAGCAAAGCTTAATTTAGCTTATTTT
GC--AAGACTAACTTGAC----------CTGGGTCATTTCTTGCTT-ATGCCTCTGGAAATCATAAGCGAAACTTAAACT
GTTTCCCAAA----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------ATTGATATGAGGTAACCACTAACCAATTCCCTATCATTTAAGAAA
ATTCTAATATTATAACCAATCAC-------TGTGAAGAATAAACAGTCACTGCCTCCTCACTATATAAGCTGCTTTATAA
CAATATA---CCCCTGAGCCTCATTCCATGTTTTGGTTTGAGTGCTCCCGGTTCGCGAACTGTCTTT-TTGGTGTGTGCA
CAATAAACTTT---------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------TACTAATTACTACT---TCGGTGAT
TCATTGG-TTTTACTTCTGCTATT-------------TCTGAACTTTTGACA----------------------------
--------------------------------
>Canis_familiaris
TGAGCAAGCACAAGCTTCTCAAATTAGGCCTCTCCGTGAATGTGCTCCTAA---GCAC---TGTTAAAATCAAACACACA
CGGAGACCAGACTTGAAAATTTCCTGAGCCAGACAAAAACCAGTTTTGTCATACAAGCAAAGCTTAATTTAGCTTATTTT
AC--ATGACAAACGAAGC---TAACGACCTGGGTCACATCTTGCTT-ATGCCTCTGAAAATCAGAACCAAAACTTAAATT
CTTCCCCCAA----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------AATTGATAGGAGGTAACCATTAACCAGTTCTCTTTCATTTAAGAAA
ATTCTGATGTTGTTACCAATCAC-------TGTGAAAAATAAACAGTCACTGCCTCCACGCAATATAAGGTGCTTTATGA
CAGTATT----CTCAGAGCCTTGTGCTGTGTTTTGGTTTGAGTGCTCCTGACTTGCAAAAGGTCTTTCTTGGTGTGTGTT
CAATAAACCTT---------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CACTAACT---------TCAGCAAT
TCCTTGGTTTTTACTTGCGTTTTTGTTCTTATTTTTTC--AAACCTTTGACA---GTAC---TAAGCTGCCAAATGGCCA
ATTGGGGCTAAATAAGAGATCTGGTGCACCTG
>Felis_catus
TGAGCAAGCACAAACCACTCAAATGAAGCCCCTCAGTGAAGGAGCTCCTAA---GCAC---TGTTAAAACCAAACACAAA
TGGTGACCAGACTTGAAAATTTCCTGAGC-AGAC---AATCAGTTTAGTCCTACAAGCAGAGCTTAATTTAGCTTATTTT
GC--ATGACAAGTGAGGC---TAACAACTCGGGTCACATCTTGCTT-CTGCCTCTGAAAATCATAACAGAAACTTAAATT
GTTCCCCCAA----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------ATTGATATGAGGTAACCACTAGGCAATGCTCTTTCATTTCAGAGA
ATTCTAATGCTGTTCCCAGTCAC-------TGTGAAGAATCAACAGTCACTGCTGCCACACTATATAAACTGCT-TGTAA
CAATATAC---TCGGGAGTCTCATACCCTGTTTTGGTTTGAGCGCTCTGGGTTTGCAAAGTCTCTTT-TTGGTGTGTGCA
CAATAAACTT----------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------CCACTAATTACTACTACCTCAGTGAT
TCCTTGG-TTTTACTTTTATTTTTGTTTTTGTTTTTTCCTAAACCTTTGATA---GTAC---TAAACTGCCAAATGGCAA
ATTGGGGCTAAGTAAGAGATCTGGTGCACCTG
>Manis_javanica
CAAGCAAGCACAAGCTACTCCAACTGGGTCCCACAGCAAATGAGCTCATAA---GCAC---TGTTAGAACCA----CAGT
CGTAGACCAGACTTGAAAATTCCCTGAGC-AGAC-AAAACCAGTTTCGTCATACAAGCAAAGCTTAATTTAGCTTATTCT
GC--AAGACAAACGAGGC---TAATGATCTGGTTCATTTTTTGCTT-GTGCCTCTGAAAATTATGAGTGAAATTT-AATT
GTTCCCCCAC----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------ATGGATATTAGGTAACCATGAATCAATCCCCTTTGGCTTAAGAAA
ATTCTAATATTGTAATCAATCACTAGATTGATTCATGAATAAACTCTCACTGCTTCCACACTGTATACATGGCTTTATAA
CAATATAC---CT--GAGACTTATTTCCTGTTTTGG--CAAGGGCTCCTGGTTTGCATCCTGCCTTT-TTGGTATGAGCA
CAATAAACTCT---------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------TATTAATTACTACT---ACAGCGGT
TCAGTGG-TTTTAGTTTGACTTCTGTTTTTTTTTCCCCCTGAACTTTTGACA---GCAC---AAAACTACCAAATGGTAA
ATTGGGGATAAATAAGAGATCTGGTGCACCTT
>Sus_scrofa
TGAGCCAGCACATGCTACCCAAACAAGTCCCCCCAGTGAATTGGCGCCTAA---GTGC---TGTTAAAAGTCAA------
------------------ATTTCTTGAGC-AGAC-AAAACCAGTGCAGTCAGACAAGCAAAGCTTAATTTAGCTGATTGT
GCAAAAGACAAGTGAGGCTTCACTTGACCTGGGTCACTTCCCACTT-AAGCCTCTGAAAATCATAAGTGAGACTTAAATT
GTTGCCCCCA----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------GTTGATATGAGGGAACCACTAACCAATTCTGTTTCATTTATGAAA
ATTCTAACATTGTAACCAATCACT------TGTGAAGAGTCAACAGTTACTGCCTCCACATTACATAAACTGCTGTGTAA
CAATCTGTAAACTCTGAGCCTCCTTCCATATTTTGGTTGGAGC-TGCCTGGTTTGCAAACTGTCTTT-TTGGTGTCTGTA
CCATAAGCTTT---------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------TACTAATCATGACT---TCAGTGAT
TCATTGG-TTTTGTTTCTGTTTTT-TGTTTGTTTTCCCCTGTACTTTTGACA---GC--------------TACGGGCAC
CTTGGGGATAAGGAAGAGATCTGGTGGACCTG
>Bos_taurus
TGGGCAAGCACACACACCCCAAATTAGGCCCCTCAGTGAATGAGCTTGTAA---GCAC---TGTTAAAACCCAACACAAA
CAGAGA-----CTTGAAAATTCCCTGAGC-AGAC-AAAACCAGGGTAGTCAGACAAGCAAAGCTCAATTTATCGGATTTT
GC--AAGACAAGTGAGGC-TCACTTGAC--GGGTCTCTTTTCAAGG-ATGCCTCTGAAAATC----ATGAGACTTAAATC
ATTCTCCCCATTTATAGGGGCTTCCCTGGTAGCTCAGCTGGTAAAGAATCTGCCTGCAATGCAGGAGACCCCAATTCGGT
TCCTGGGTCAGGAAAGCCACTGGAGAAGGGAACGGCTACCCACTCCACTATTCTTTGGGCTTCCCTGGTGGCTCAGATGG
TGAAGAATCCACAGGCAGTGTGAGAGACCTGGGTTTGATCCTGGATTGGAAAGATCCCCTGGAGAAGAGAAAGGCTACCC
ACTCCAGTATTCTGGCCTGGAGAATTCAATAGACAGAGGAGCCTGGCAGGCTACAGCCCCTGGGGTCGCAAAGAGTCGGA
CATGACTGAGTGACTTTCACTTCTCACTTTCCCCCATTTATAGGTGGGAACCGTGAACCAACTCCCTTTCACTTCAGAAA
ATTTTAATGTTGTAACCAAGCGC-------TGTGAGGAATCAACCGTCAGTGCCTCCACATTATATAAGCTGCTCTGTAA
CAA----------------------CCATCTCTGAGCCTCGTTGCTCGTGCTTTGCAAGGTGTCTTA-TTGGTGTGTGTA
CAATAAACTTCTGGGTTTCCCAAGTGACTCACTGGTGAAGAACTGCTTGCCAGTGCAGAAAATGCGGGTTCTACCCCTGG
GTTGGGAAGATCCCCTGGAGAAGGAAAGGGCAATCCACCCCAGCATTCTTGCCTGGGAAATCCCATGGACGAGGAAGCCT
GGTGGACTACAATCCATGGGGTCACAAAGAGTCCGACACGACTTAGTAGTAGCACCATAAACATATACCA--TCAGTGAT
TCACTGG-TTTC----TGGGTT----TTTTTTCCTCTCCTGAAC-TTGGACA---GCAC---TAAACAGCTAAATGGCAC
ACTGAGGATAAATAAGAGATCTGATGCACC-G
>Equus_caballus
TGAGCAAGCACAAGCTACTCAAATTAGGCCCCTCAGTGAACAAGCTCGTAA-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------GCAC---TAAACTGCCAAATGGCAA
ATTGGGGATAAGTAAGAGATCTGGCGCACCTG
>Ceratotherium_simum
TGAGCAAGCACAACCTACTCAGATTAGGCCCCCCAGTGAATGAGCTCGTAA-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------GCAC---TAAACTGCCAAATGGCAA
ATTGGGGATAAGTAAGAGATCTGGCGCACCTG
>Myotis_myotis
TGAGCAAGCACAAGC--CTCAAATTAGGCCCCTCAGTGAATGAGCTTGTAA-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------GCAC---TAAACTGCCAAGTGGCAA
ATTGGGGATAAGTGAGAGATCTGGTGCACCTG
>Rousettus_aegyptiacus
TGAGCAAGCACGAGCTACTCAGATTGGGCCCCTCGGTGAATGAGCTCGTAA-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------GCAT---TAAACTGCCAAAAGGCAA
ATTGGGGATAAGTAAGAGATCTGGTGCACCTG
>Condylura_cristata
TGAGCAAGCACAATCTACCCAAATTAAGCGCCTCAGAGAAGGAGCT--TAA-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------GCAC---TAAACTGCCAAATGGCAA
ATTGGGGCTCAATAAGAGGTCTGGTGCACCTG
>Sorex_araneus
TGAGCATGCACAAACTACTCAAATTAGGCTTTTCGGTGAATGAGCTCTTAA-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------GCAT---TAAATTGCCAAATGGCAA
ATTGGGGATAAGTAAGGGATTTGGTGCACCTG
>Homo_sapiens
TAAGTACATGCAAGCCACTCAAATTACACCCCTCTGTGAATGAGCTCTTAA-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------GCAC---TAAACTGCAAAAAGGCGA
ACTGGGGATAAGTAAGAGATCTGGTGCACCTG



Dog2_LTR

>LTR9A_EC
----------------------------------------------------------------------TGTGTAGTGT
AAGCCCTGACAGTTGTTTT---TTTTTTCTTTTTTGTAATGCAAGTGCCTGAC-TTAAGCTTTGATTGCTGAGGCATCCA
CTTCAAA-GAGGCATCC---------------------------------------------------------------
------------------------------------------------------------------------ACTTCAAA
GATGGCTATCTCGAATAAACACATTGCC-AGCCAC--ACGACTAGATAAAGAGCCAGGCCGCCTCCCCCCACTGAGGCTC
CTTTGTTTTAGAGATCTTGGTTGATTTCAATAA-CTGACCATT--------------TGGGCCACTTGTTTTTTTTTCCT
CTTCCTGTGCTTTAAATTCCNACTCTT-ATGTTTTAAATTCACCAATAAAGAGTGAGCCCACGAAACCCTA-GGCCCCCA
CCCTCAACCCCAATAAAAGCAGAACCCCAG------GCCCGT--------------------------------------
GTACTCTC---TCTCTCTCTCTCTACCCGTGACCTCGCTGTGTGG-CCCCAGGTGTGCTGTGTAATTTCCAGG-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------TCCTGTAAGTAATAAAC
CTTTATTTTTTCA--AAGTTTCCTGATGGTTATTGCTGAAGGGCATCTTGCAATCATA---------A-TAAGAACCACA
AGGGCTGGTCCAGCCACAACATTG-GTTATTGATAGGCTGAGACNGGCACAAAACA------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------
>Canis_familiaris
TAATAAGTATAAGAAAATTAATAAATGAGTA-AATTACTGTCTGAG--------TGAT-G---AGTT------ATAG-AT
CAACCCTAACAACTGGTTTTCTATTTTTCTTTTGTGTAATGCAAGTGCCCCAC-TTAAGCCTTGATTG------------
--TCAAA-GTG---TTC---------------------------------------------------------------
------------------------------------------------------------------------ACTTCAAA
GATGGCTA-ATCTGATAAACACATTATC-ACCCACAGTAGACTAGATAAAGGTCCAAGCCACCTCCTCTGGCTGAAGCTC
TTTTATTTTAGAGATCTTGGTTGATTTCAATTA-----CTATT--------------TGGGCCACTTGTTCTTT---TCT
CTCTCCGTGCTTTTAATTCCCATTCTT-ATTTTTTAAATTGACCAATAAAGAGTGAGCCCAGAAAACCCTA-GGCTTCCA
CCCTGAACCCCAATAAAAGCAGAACCTCAT--------------------------------------------------
AAGTTCTCTGTTCTCTCTCTCTCTACCTGTGATGTCACTGTATGGCCCCCAGGTGTGCTGTGTAATTCACAGG-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------TCTTATAAGCAATAAAT
TTGTAATTTTTCA--AAGTTTCCTGATGGTTATTGCTGAAGGGACTCTTGTAATTACA-------------AGAACCACA
-------------------CATTG-GTTATTGAGAGGATGAG----GCACAAAATATT---GATG---TGCACTCATATG
AATTTTTATTTTTTAAATTATTTTTATTTGGGATCCCTGGGTGGTGCAGCGGTTTGGCGCCTGCCTTTGGCCCAGGGCGC
GATCCTGGAGACCCGGGATCGAATCCCACGTCGGGCTCCTGGTGCATGGAGCCTGCTTCTCCCTCTGCCTATGTCTCTGC
CTCTCTCTCTCTTTCTGTGTGTGTGACTATCATAAATAAATAAAAATAAAAATAAATTTTTTAAAATTATTTTTATT---
TATTTTTATGTGAATTTTTA--AAACAAAACTAAGATCATAGAGTAGGCAT-GC
>Felis_catus
TAATAAATATAAGAAAATGAATAAATGAGTAGGATTAGTGTATGAA--------TGAT-G---ATTT------ATAGTAT
AAACTCTGACAATTGGTTT--TATTTTTCCTTTTTGTAATGCAAATGCTGTAC-TTAAACCTTGATTG------------
--TCAAA-GTG---TCC---------------------------------------------------------------
------------------------------------------------------------------------ACTTCAAA
GATGGCTGTCTCCAGTAAACACGTTGTCTAGTCACAGTAGACTAGATACAGAGCCAGGCCACCTCCCCTGACTGAAGCTC
TTTGGTGTTAGAGATCTTGGTTGATTTCAAGTA-CTGACCATT--------------TGGGCCTCTTGTTTTTT----CT
CTCCTTGTGCTTTAAATTCCCATTCTT-CTGTTTTAAATTCACCAATATAGAATGAGCCCACAAAACCCTA-GGCTTCCA
CCCTCAACCCCAATAAAAACGGAACCCCAACATTCTGCTTGC--------------------------------------
TAGCTCTC---TCTCTCT-TGTCAACCTGCGACCTCA--GTGTGG-CCCCAGGTGTGCTGCGTAATTTGCAGG-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------CCTTATAAACAATAAAC
TTTTAATTTTTCT--GAGCTTCCTGATGGTTATTGATGAAGGGCATCTTGCAATCATA---------A-TAAGAACCACA
------------------ACATTG-GTTATTGATAGGCTGAGATCAGCACAAAACATT---GATA---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TACACCCATATGAATTTTTA--AAACAAAACTAAAATCATAGAGTAGGCACTGC
>Manis_javanica
AAATAAATGTAAGAAAATGAGTAAATGAATG-GATTGGTGTATGAA--------TGATAT---GATA-------TAGTAT
AAACCCCAACGA--GTTTT----TTTTTCCTTGCTGTAATGCAAGTGTCTGAC-TTGAGCTCTGATTG------------
--CCAAG-GCA---TCC---------------------------------------------------------------
------------------------------------------------------------------------GCTTCAGC
TGTGGCTGTCTTGAATAAACA-GCTGCC-AGCCCC--TTGCCTAGGTATAGCACCAGGCCACCTCTCCTGACTGAGGCTC
TTTTGTTTTAGAGATCTTGGTTGATTTCAATGA-C--ATTACT--------------GTGGGCCCTTGTTTTTT----TC
CTCTCTCTACTTTAAATTCCTGCTCTTAATGTTTTAAATTTACCATTAAAGAATGAGCCTGTAAAAACCTA-GGTCCCCT
CCCTCGACCTAATAAAAAATAAAACCCTT-------GACTGT--------------------------------------
GAGCC------ACTTTTTCTCTCTACCCACAACCTCACTGTGTGG-CCCCAGGTGTGCTGGGTAGTTTCTAGT-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------TCCTATAAATAGTAAAC
CTTTACTTTTTC----AGTTTCCTCATGGTCATTGCTG-AGGGTATCTTGTAATCATA---------ATTAAGAACCACA
AGGGTTGGTCCAACTTAAACAATGAGATATTGATAGGCTGAGACCAGCACAAAATAT----GATA---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TACACTCATAGGAATTTTTA--AAACAAAAATGAGATCATACAATAGGTGTTGC
>Sus_scrofa
TAATAAATATAAAAGAATGAATAAATGAAGG-GGTTAGTCTATGAA----GGATTAAT-G---GATG------ATGGTAT
AAACTCCTACAGTTTTTGT--TTGTTTTTGTTTTTCTAATGCCAGTGCCTGAC-TTCATCTTTGCTGG------------
--CTGAG-GCA---TCC---------------------------------------------------------------
------------------------------------------------------------------------ACTTCAAA
GGTGTCGGTCTCGAAGAAACACATTGC--------------------AGAGAGCCAGGTCACCTCCCCACACTGA-GCTC
CTTAGTTCTAGAGGTCTTAGTTGATTTTAATAA-CTGATGATGTA--TTTCTTTCAGTTGGCCACTTATTTTTG------
-ACTTCATGCTTTACATATCCACTCTT-ATGTTTTAAATTCACCAATAAAGAGTAAGACCAAGACAGCCTT-AGCCCCCA
CCTTAGACCCAGTAGAAACAGGAACCCTGCTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCACAGGCAC
ATGCGCTCATGTTCTACTCTGCCTACCCG-GACCTCACTGTCTGG-CCTCAGGTGTCCTGTGTAATTTCTGGG-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------TTCTATAAATAGCAAAC
CTTTATTTTTTTTTCAAGTTTCCTGGTGGTTATTACTGAAGGGTGTCTTGCATTCATATGCATTCATATTGGGAAGCACA
TGGGCCAATCCAATAACAATATC--ATTGTCAGTAGGCTGAGACT-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TGCACCCATATGAATTTTTA--AAACAAAAATTAGATCATACAATAAGGATGGC
>Bos_taurus
TAATAAATATGAAAGAATGGATAAATGAAGG-AGTTAGTCTATGAATGATGCATTGAT-G---GTTT------ATAGTAG
AAACCCTGAGAG--GTTTT---GATTGTCGTTTTTTTATTGAAAGTGCCTGACTTTAAGCTTTGATTGCTGAGGCATCTA
CCTCAAAGGTGGTGTCCATGGAGTTTCCCAGGCAAGAATACTGTGGTTGGTTGTCATTTCTTTCTCCAAGGGATCCTCTC
AACCGAGGGATTAAACCCAGGTCTCCTGAATTGCAGGCAGATTCTTTACTGACTGAGCTGCCAAGGATGCTTACTTCATT
GGTAGCTATCACTAATAAACATATTTC--------------------AGAGATCCAGGTCCCACCCCCAACTTGTAGCTC
CTTTGTTTTAGAGGTGTTAGTTGATTTTAATAATCTGATGATTCATTTTTTTTTCAATTGGCCACTTAGTTTTT------
CTCTTCCCACTTTACATTTCTACTCTC--TCTTTTAAATTTGCCAGGGAAGAATGAGCCCATAAAAACCCATAGCCCCCA
CCTTTAACCCCAGTAAAAGCAGAAACTCAGGCCCATGCTTGG--------------------------------------
-----------TCTCTTTCACTCTTCCT---------CTGTGTGG-TCCCAGATGTACTGTGTAATTCAAGATGCTGTAA
GTCATCAGTTCAGTTCAGTCGCTCAGTCGTGTCCTACTCTTTGTGATCCCATGGACTGCAGCATGCCAGGCTTCCGTGTC
CATCACAAACTCTTGGAACTTGCTCAAACTCATGTCTGTCGAGTCTGTGATGCCACCCAACCATCTCATCCTCTGTCGTC
CCCTTCTCCTCCTGCCTTCAGTCTTTCCCAGCACTGGAGTCTTTTCCAGTGAGTCAGTTCTTTGCATCAGCTGGCCAAAG
TATTGTAGCTTCTGCTTCAGCATCAATCCTGCCAATGAATATTCAGGACTGACTTCCTTTAGGATGGACTGGTTGGATCT
CCTTGCAATCTAGGGGATTCTCAAAGAGTCTTCTCCAACACCGCAGTTCAAAAGCATCAATTCTTTGGTGCTCAGCTTTC
TTTATAGTCCAACTCTCACATCCATACATGACCACTGGAAAAACCATAGCTTTGACTAGACAGACATTTGTCGGCAAAGT
AATGTCTCTGCTTTTTAATATGCTGTCTAGGTTCGTCATAGCTTTTCTCCCAAGGAGCAAGTGTCTTTTAATTTCATGGC
TGCAGTCACCATCTGCAGGGATTTTGGAGCCGCCAAAAATAAAGTCTGTCACTGTTTCCATTGTTTCCTCATCTATTTGC
CATGAAGTAATGGGACCAGGTGACATGGAATGTTGAGTTTAAGCCACTTTTTTTTTCACGCTCCTCTTTCACTTTCATCA
AGAAGCTCTCTAGTTCTTCTTCACTTTCTGCCATAAGGGTGGTGTCCTCTGCATATCTGAGGTTGTTGACATTTCTCCCA
GCAATCTTGATTCCAGCTTGTGCTTCATCCAGCCCAGCATTTCACATAATGTACTCTGCATATAAAAGTTTAATAAGCAG
TGTGACAATGTACAGCCTGTTCGTACTCCTTTCACAGTTGGAACCATCTATTGTTCCATGTCTGGTTCTAACTATTGTTT
CTTGACCTGCATACAGATTTCTCAGGAGGCAGGTAAGATGATCTGGTATTCCATCTCTTGAAGAATTTCCTACAGTTTGT
TGTGTTCTACACAGTCAAAGGCTTTGGCGTAGTCAATAAAACACAAGTAGATGTTATTCCGGAACTCTCTTTCTTTTTCT
ATGATGCAATGGATGTTGGCAATTTGATCTCTGGTTCTTCTGCCTTTTCTAAATCCAGCTTGAACATCTGGAAGTTCATG
GTTCACATACTGTAGAAGCCTGGCTTGGAGAATTTTGAGCATTCCTTTGCTAGCGTGTGAGATGAATGCAATCAGTCGTG
TGGTAGTTTGAATGTTCTTTGGCATTGGCCTTCTTTGGGATTGGAATGAAAACTGACCTTTTCCAGTCCTGTGGCCACTG
CTGGGTTTTCCAGATTTGCTGGCATATTGAGTGCAGCACTTTCACAGCATCATTTTTTTAGGATTTGAAATAGCTCCACT
GGAATTCCATCACCTCCACTAGCTTTGTTATTAGTGATGCTTCCTAAAGCCACACAAAGATGCTTCTGTAAATTATAAAC
CTTTATTTTTTC---AAGTTGCCTGGTGATTATTGCTGAAGAGTGTCTTGCACTT----------------AGAACCACA
AGGGCTGGTTCAATAACAGTGTTA-GTTATTGGTAGGCTGAAACTGGCACATGA--------AGA---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TATACCCATATGAATTTTTT--AAACAAAAATTAGATCTTACAATAGGTATTGC
>Equus_caballus
TAGTAAATATAAGAGAATGAATAAACGAATT-GATTAATGTATGAA--------TGAT-G---GATA-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TACGCCCATATGAATTTT----AAACAAAAATTAGGTTATATAACAGATATGGC
>Ceratotherium_simum
TAATAAATAGAGGAGAATGAATACATGAATG-GATTAATACATGAT--------TGAT-A---GATA-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TACACCCATGTGTATTTTT---AAACAAAAATTAGATCATACAACAGGTATGGC
>Desmodus_rotundus
TAATAAATATAAGACAAGGAATAAATTAATA-GATTAATGTACGAA--------TGAT-G---GATA-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TCCATCCATATGAATTTTT---AAACAAAA-TTAGATCATAAAATAGGTATTAT
>Rousettus_aegyptiacus
TAATAAATACAAGACAATGAATAAATGAACA-GATTAGTGTATGAA--------TGAT-G---GGTA-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TATATCCATATGAATTGTT---AAATAAAAATTAGATTGTACAATAGGTATTGT
>Condylura_cristata
TAATAAGTACA--ATGAGTAATAAATAAATG-GATTAGTGAATGAG--------TGAT-G---GAGA-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TACACCAATATTAAATTTG---TAACAATAATTAGGTCATGCAATAGATAATGC
>Sorex_araneus
TAATACGT-----GAAATGAATAAATATAAATAATTAGT----AAA--------TGAT-G---AATG-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
AGCATATATATGCATGTTTATTAAATAAAAATTCTATTATGCAATAGATATCAC
>Homo_sapiens
TAATAAATATTAGAGAGTGAAGAAATGAATG-AATTAGTGAACAAG--------AAAC-G---GATA-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TACACTGATATGAATTTTTT--AAACAAAATCTAGATTAT-----AAGTATTGC



Dog3_LTR

>CARERVR1_LTR
--------------------------------------------------------------------------TGTTGG
GGAAGGTCATCG-AGAAGACGTGACCGCCGGTTGACCCGTGAGCTGGAC-----CCGGGCAATCAGAGGCTCCTCACCCC
CTCCCCTGTCCTTGGAATGTGGGTTCCGCTTGCCTTCCCCGCTCCCAGAGGCTGCTCCAAGGACACAGCCTTGAGATA--
GTGA-----TGTGGTGTTGAGAACACCTGNACGGTATACGTGACTGAACCCAGTTAAGGCCTCTATATAAACTTTTAAGA
TT-TGGCGGG--CGGGTGCGGAGATCTACTCGTCTTG------CTGCCGCCCAAGACAAGCCTCGTATGTAAGTTCCCTT
TGCTTATTAAANCTGCCACCTACCAACCTGGAGTGGCCTGCCTCTTTCTTCGGTCTCTCCCTG-CCCTCTGCGTACGGGG
GCCGGTTTCAGATTACACCCGGGAAGCTCCCGAGGGGGTTGCGAACCAACA-----------------------------
----------------------------------------
>Canis_familiaris
ATAT-----GATTGCATCAGTTACAACTACATTGTTATTAA--AGAACCTTAGGTAGGACATT---ATGGT---TGTTGG
AAGAGGTTATC-TAGGGGATGTGACCTCCTGTTGACCTGGGGTTTGTAC------CAGGCACTCAGACACTGTT---CAT
CTTTCC-ATCTTTGGAATGTATG--------------CTCACAATGGGAATCCTTTTTAAAGGAACAACCTTGAGAGAAC
AAGACCATCTGTACCATTCACACCATCTGGACCAAATACATGACCGAACCCAGTTACCACTGCTATAGAAACCT-TAAGA
TTTTGGCAGGCAGGTGTGGGGATCTACTCCTCTTGTG--------GCCACCCAGGGCAAATCT----GATGAGTTGCCTC
-GCTTATAGAACCTGCAATCTACCAGTGTGGAGTGTCCCGCTTCTTTTTCTGGTCTCTCCTTA-CCCTCCTTCTTTGGGT
-CCGATTTCAGATTTCACCTAGGAAGCTGCTGAGG---TTGCAGACCAGTA---GTGGC---ACAGGA-AT-------GC
GCTGCCTACTTAAAAGTCCTCTCTCATCCCCATTTCATCC
>Felis_catus
ATAT-AAAAAATTACATCAATTACAGCTACATTGTTTTTAA--ACAACCTTAGGTAGGACATT---GTGGT---TGTTGG
AGGAGATCATT-TAGAAAGTGTAACCTCCTGTTGACTTGTGATCTGGAC-----CCAGGCAATCAGAGACTTTTCATCTC
CTTTCC-ATCTTTGGAATGTATGGTCTGCCCACCATTATCACTATGAGAATCATTTTCAAGGACACAACCTTGAGAGAAC
AAG-------ATGTGGTTCAGAC-ATCTGGACTGAATACATGACAGAACCCAGTTACCATCTCTCTATAAACTT-AAAGA
TTGTGGCAGGCAGGTGTGGAATTCT-CTCCTCTTGTGCCCCCCCCCCCCCCCATGTCAAGTCT----GGGAAGT------
-GCATATTCAACTTGCCACTGACCAATCAGGAGTAACCTGCTTCTTTCTTTGGTCTCTCCTTG-CCCTCTGTGTTTGGGT
-CTCATTTCACATTTCACCTGAGAAG-TGCTGAGG---TTGCAGACCAGCA---GTGGC---TCAGAA-AT-------GT
GTTGCCTACTTAAAGATCCTTTCTCATCTTCATTCCACCC
>Manis_pentadactyla
AGATATTA--------------------ACACTGTTACTAG--GTAACCT----GAGGAC-CA---GTGGC---TGTAGG
AGGAGGTCATG-GAGAGGATGGGACTCCTGGTTGACCCTCGAGCTGGAC-----TGGAGCAATGGGAGGCTCCT--GTAC
CCTTCCTGCCCTTTGAA---------------CTGTTCCTAAAATGAGAGCCCTTTTCAAGGACGCAGCCTTG-------
---------------------ACTATCTGGA-----TATGTGGCTGCACCCAGTTAAGGTTTCTACATAAATTTGTAAGA
TTATGGT-GGCAGGTGTGGAGATCTACTCATCTTTCT--------GCCCTGCAGGACAAGCCTTGTATAGAAGTTCTTTT
-GCTTGTTGAACCGGCCGCCGGCCCACCTAGAGTGGCCTGCCTCTTCCTTTGGCCTCTCCTTGCCCCCCCGTGTATGGGG
-------CCAGATTCCACCTGCGAGGCTCCCAAGA---TCTCAAATCAA-----GGGGC---ATGGGATAT-------GG
GCTGCGTACTTAGAGGTCCTCCCTCATCTCCATTCCACCC
>Sus_scrofa
ATATATTGCAATGATATCAATTACAAATGTATTCTTGTTAA--A-AACCT----TCGAACACT---GTGGC---TGCTGA
AAGAGGTCATCAAAGAGGAGATGACAACCAGTTGACCTAGGAGCTGGACCTGGGCAGGGCAACTGGAAGCTCCTTGCCTC
CTCCCCTGGCCTTGGAATGTATGTTCTGTCCACCATTCCCCCT-TGGGAGCTGTTTTCAAGGACTCGGCCTCGAGAGAAC
AGT-------GTGTTTTTGAGATCATCTGGACTGCGTATGTGACTGAATCCAGTTAAGATCTCTATAGAAACTTTTAAAA
TTCTGGCAGGTAGGGGTGGAGATTTATTCATCTTGTG--------ACGTCCTAAGACAAGCCTCATATGTAAGTTCTCTT
-GCTTCTTAAACTTGCCACCTGTCCATCTGGAGTGCTCTGCCTCTTTCTTGGGTCTCTCCTTG-CCCTCCACGTATGAGA
GCCAGTTTCAGATTTTACCCAAGAAGAACCAAAGA---TTTTGAACCTACA---ATGGC---ATAGAA-AT-------GT
ATTGCCTACTTAGAGGTTGTNNNNNNNNNNNNNNNNNNNN
>Tursiops_truncatus
ATAT---------------ATTACAATTACTTTCTTATTAA--A-AACCT----TAGAAAACT---GTGGC---TGCAGA
AGGAGGTCCTC-AAGAGGACATGACTACCAGTTGACCCAAGAGCTGGACCTGGGCAGGGCAATCGGGA--TCCTCACCAC
CTCCCTTGGTGTTGGAATGTACATTCTGTCCACCATTCCCACAGTGGGAGCTGCTTTCAAGGGCGCAGCCCTGAAAGAGT
AAG-------GTGTTGTTGAAACCATCTGGATGGTATATGTGACTGAACCCAATTAAGACCTCTATATAAACTTTTAAAA
TTCTGGCAGGTGAGGGTGGAGAGCTACTCATCTTGTG--------GCTGCCCAGGACAAGTCTTGTATGTAAATTCCCTT
-GATTATTAAACTTGCCACCTACCAATCTGGAAAGGTCTGCCTTTTTCTTGGGACTCCCCTTG-CCTGCCATATATGGGG
ACCAGTTTCAGATTTTATCCGGGAAGGACCAAAGG---TCTT-GACTTG----------------AGA-AT-------GT
GTTGCCTAATTAAAGGTTGTTNNNNNNNNNNNNNNNNNNN
>Equus_caballus
ATATATTACAGTTA-ATCAACTACAATTACTTAGTTATTAA--ATAACCT----TGGAATGTT-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------GTGGC---AGGGGA-ATTGTGGCAGT
GTTGACTACTTAGAGGTCTTCCCTCATCCGCATTTCACCC
>Ceratotherium_simum
ATATAATACAGTTA-ATCAATTACAATTACTTTGTTATTAG--ATAACCT----TGGGATATC-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------ATGGC---AGGGCA-AT-------GT
GTT-CCTACTCAGAGGTCTTCCCTCACCCCCATTCCACCC
>Myotis_myotis
ATACATTACAATCACATCAATTACAATTATATTATTACTAA--A----------TAGGATAT------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------CTGGC---ATGGGA-AT-------AT
CTTGCCTTCTTATAGGTCCTCA-TAACCTCCTTTCCACCC
>Rousettus_aegyptiacus
ATAT---------------ATTACAATTACACTTTTATTAA--ATAACTT----TAGGACAT------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------GTGGC---ATGGGG-AT-------GT
GCCACTCTCTTGGAGGTCCTCCCTCATCC-CATTTCACTC
>Condylura_cristata
ATATATTTC------AGCAGTTACAATTGCAGTACAATTAA--CTAATCT----------ATT-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------GTTGC---ATGGGA-AT-------GT
GTTGCCAACTTAGAGGTCTTAACTCATCCCTCTTCTACCC
>Sorex_araneus
ATACATTCCAATGACGTCAATTTCAATTATGGTCTAATTAAATTTTGTTC----------ATC-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------GTGAC---ATGGGT-AT-------TT
GTTAGCTAATTGGAAGTCCTACCTTATTCCTGTTTT-CCC
>Homo_sapiens
ATATATTATACTGACATCAATTACAATTACATTACAATTAA--ATAACCT----TGCTATATT-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------GGAGC---ATGGGA-AT-------AT
GTTGCCAACTTAT---TCCTGCCTCATCCCTATCCTACCC



Dog4_LTR

>MER34C_CF
-----------------------------------------------------------------TGAAGGGGAGCAGAA
TTTGCCACCCCA-AAATATGCCTCTTTGGCATAAGGATTA-----TTTTAGGCTGATTATTTTTAAGAAACTGCAGACAC
AGGAGAAGCTCTGAAAACCGAGTAGAAGTTACCCTTTTGTAAGAGACATTTACATTTATAA---GGGAAATCTCCATTTG
TAAGGGTGTCTCCCTCTCTGTACCAGGAAGAGGAGGATGACTCTAAATCTCTAGAAACTCTTATCAATGGAGAAG---GC
AAGGACTTAAATCTGCATAACAACCTTACCCTTGTTTACTGTGCTTTTCCTGGTAACCTCCCATAACTGACT-CCCCACC
CCCAACA----TCTTTTTTGTCTTTAGCTGGAGATGGTATTTAAGGTGATGGCTTGGGCCATTTCGGGG-AGTTACTCAG
TTTTCCTGGGTCTCTCCCATGTATACAGGAGGTATACATATGTTATTAAACTTTTGTTTGTTTTTCTCCTGTTAATCTGT
CTTATGTCAATTTGATTCTTAGACCAGCCAG--AAGAACCTAGAAGGGTAGAGGAAAATTTTTTTCTCCT---CAACA--
----------------------------------------------------------------------------
>Canis_familiaris
GATAGGCTACCCACTTTGCTAAAGCTT-----CTTGAGTTTAAGGATATTGCTTA---TTAG---TGAAGGGGAGCAAAA
TATACCACCCCA-AAATATGCCT-TTTGGCATAAGAATTA-----TTTTAGGCTGATTATATTTAAGAAACACCTGACAT
AGGACAAGCTCTGAAAGC--AGTAGATGTTACTCTTTTGTAAAAGACATTGACATTGGTAA---GACAAATCCTTATTTG
TGAGG-TGTTTCCCTCTCTGTACCAGGAAGAGAAGGTTGACTTTGAATCTCCTGAAACTCTTATCAATGGAGAAA---GT
AAGGAATTAAATTTGAATAACAAACATACCCTTGTTTACTGTGCTTTACCTGATAACCTCCCTTAACTGGCTGCCTCACC
CCCAATG----TCTTCTTTGTCTTTAGCTGGCGATGATATTTAAGGTGACAGCTTGGGACATTTTGGGG-AGACACTCAC
TTTTCCTGGGTGTTTCCCATGTATACGGGAGGTAT--ATATGTTGTTAAACTT----TTGGTTTTTTCCTGTTAATTTGT
CTT-------TTTATTACAGAGATGTCTCAGCCAAGAACCCAGAAGGGTGAAGGGAAAATTATTTTTCCTTCCCCACA--
-TTAG---CCAAAAAAGAAAAAAATAAAA------------------TTCTTAAACGTTGGCTAGATTCCCAGCAA
>Felis_catus
GCTCAGCTACCCAC-TTGCTAAAGCTT--CCTCTCAAGTTTAAGGATATTGCTTA---TTAG---TGAAGGGAAGCAAAA
CATACCGCCCCA-AAATATACCT-TTTGGCATAAGGATTATTTTGTTTTAGGCTGATTATTTTTAAGACACAGCTGACAT
GGGAGAAACTCTGAAAGC--AGTAGATACTACTCTTTTGTAAAAGACTTTGACATTC-TAA---GGCAAATCTTCAATTG
TAAGGGTGTCTCCCTCTGTA---CAGGAAGAGAAGGATGCCTTTAAATCTCCGGAAACTCATATCATTGGAGAAG---GC
AATGACTTAAATCTGTATAACAGCCATACCCTTGTTTACTGTGCTTTCCCTGATTACCTCCCTTAACTGGTTGCCTCACC
CCCAACA-------TCTTTGTTTTTAGCTGGAAATGATATTTAAGATGGCAACTTGAGACACTTTGGGG-----AGTTAG
TTTTCCTGAGTGTTTCCCATGTATACAGGAAGTAT--ATATGCTATTAAACTT----TTGCTTTTCTCCTGTTAATCTGT
CTT-------TTTATTTCAAAGATGTCTCAGCCAAGAACCTAGAA---GAGGAGGAAAATTATTTTTCCTACCCCACA--
-TTAG---CAGCCGCACCCCACAAAA--------------------TTTCTTAAACATTGGCTAGATTCCCAGATA
>Manis_pentadactyla
GCTGGGCTACCCACTTTCCTAAAACCT--CCTCTCAAGTTTAA---TAGTGGTTA---TTAA---TGAAGGGGAGAAAAA
CATACCATACCA-AAATACATCTCTTTGGCATATTGATTA-----TT-----CTGATTATTTTTAAGAAACAGCAGATGC
AGAAGAAGCTCTGAAAACCAAGTAGACGTTTCCC-TTTGTAAGAGATATTTACATGTATAA---AGAAAATTTCAATTTG
GAAGGGCGTCTCCCTTT--AGACCAGGAAGAGGAGGATGACTCTAAATCTCATGAAACT--TATCAATGGAAAAAAATGT
GGCAACTTAAATCTGCATAACAACCTGACCCTTATTTACTGTGCTTTGCCTGATAACCTGCCATAACTGACC------TC
CCCAGCAACATCTCCTTTTGTCTTTAGCTG---ATGGTATTTAAGGAGGCAGGTTGAGCCTTTGTGGGGAAGTTACTCAC
TTTTCCTGGATCTCTCTGTCGTATACAGGAGGCAT--ACATTTTATTAAAC------TTATTTTCCTTCTGTTAATCT--
--T-------TTTATTATAGGGG-GTCTCAGTCAAGAACCTAGAAGGGTGGAGGGAAAATTA-TTGTCCTCCCCTACG--
-CTAG---AAAAAGAAACAGATAAAAA-------------------TTTCTTAAGCATTGGCTAGAATCCCAA-AA
>Sus_scrofa
ACTGGGCCACCCAGTCTCCTAAAGCTT--CCTCTCAAGTTTGAGTATATTGCTCA---TTAG---TGAAGGGGAACAAAA
CACACCACCCCCAAAATATGCCC-ATTGACA-AAGGATTA-----GCTTAAACTGGTCATTGTTAAGAAAGAGCAGACAC
AAGAGAAGCTCTGAAAACGGAGTAGAACTTAACACTTCGTAAGAGGCAAGTGCTATTATAAAATGGGAAATCTCCATTTG
TAAGGGTGTCTCCCTCTCTGCACCAGGAAGAGAAAGATAACTCCAAATCTCTAGGCCCT----------AAGAAG---GC
AAGGACTTAAATCTGCATAACAACCCGACCCTTGTTTGCTGTGCTTTTCCTGGT-ACCCTCTTCAACTGGTCTCCTGGTG
TCCCCCAACAAATTCTTTTGTCTGTAATTGGAGATGTTGCTCCGGGTGGCAGCTTGGGCCATTTCCAGG-AGTTACTCAG
TTTTCCTGGATCTC-CGCACGTACACAGGGGGTAT--AGGTGTTATTAAACTTCCGTTTGTTTTTCTCCTTTTATTCTGT
TGT-------TTTATCACGGGGACATCTCAGCCAAGAACCTAGAAGGGTGGAGGGAAAATTATTTTTCCCCCACCACA--
-TAAG---CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTAAAATTCTTTAAACATTGGCTAGATTCCCAGCAA
>Tursiops_truncatus
ACTGGGCCACTCAGTTTCCTAAAGCTT--CCTCTCAAGTTTAAGGATATTGCTTA---TTAG---TGAAGGGGAGCAAAA
CATACCACCCCA-AAATACGGCCCTTTGACATATGG-TTA-----TTTTAAGCTGGTCATTTTTGAGAAACAGCAGACAC
AGGAAAAGCTCTGAAACCTGAGTAGAAGTTCCCCTTTTGTAAGAGACAAGTCCATTTATAA---GGGAAATCTCCATTTG
TAAGGATGTCTCCCTCTTAGTACCGGGAAGAGAAAGATGATTCTAAATCTCTAGAAACTGTTAACCACAGAGAAG---AC
AAGGACTTAAATCTGCATAACAACCTTATCCTTGTTTACTGTGCTTTTCCTGGTCACCTCCCACAGCTGGCCTCCCCGCC
CCCCAAC-------ATCTTCTTTTTAATTGGAGATGTTACTTAAGGTGGCAGCTTTGTACATTTCCGGG-----AGTTAG
TTTCCCTGGGTCTCTCCCCTGTATACAGTAGGTAT--ACATGTTGTTAAACTT--GTTTGTTTTTCTCTTGTTATTCTGT
CTT-------TTTATCACAGGAAGGTCTCAGCCAAGAACCTAGAAGGGTGGAGGGAAAATTATTTTTCCTCCACCACA--
-TTAG---CAAAAAAAAAAAAAAAAAAAAAAGATTAAAA-------TTTCTTAAACATTGGCTAGATTCCCAGCAA
>Equus_caballus
GATGGGCCACCCACTTTCCTAAGGCTT--CCTCTCAAGTTTAAGGATATTGATTA---TTAG------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------CAAAAAACAAAAATAAAAATAAAAAA------------TTTCTTCAATCTTGGCTAGATTCCCAGCAA
>Tapirus_indicus
GCTGGGCCACCGACTTTCCTAAAGCTT--CCTCTCAAGTTTAAGGATGTTACTTA---TTAG------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------CAAAAAAAAAAAAAAGATAAAAAA--------------TTTCTTCAACATTGGCTAGATTCCCAGCAA
>Myotis_myotis
GCTG--------ACTTTCCTAAGGCTC--CCTCTCAAGTTTAAGATTATTGCTTA---CTAG------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------CCAAAAAATAAGATAAAAAT------------------TTTATTCAACATTGGATAGATTCCCAGCAA
>Rousettus_aegyptiacus
ACTGGGCCACCCACTTTCCTAAAACTT--CCTCTCCAGTTTAAAGATATTGCTTA---TCAG------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------CAAAAAAAAA--------------------------------TTAAACATTGGCTAGATTCCCAGCAA
>Condylura_cristata
GTTAGACCACCCAG-TTCCTAAAGCTT----CCTCAAGTTTAAGGATATTGCTGA---AAAA------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------CAACAACAAAGTATAAATAAAAATAAAAA---------GTTCTTAACCATTGGCTCCATTCCCAGCAA
>Erinaceus_europaeus
GCTGGGCAAGCCAGTTTCCTAAAGTTTTGTCTTTCAAGCTGAAGGGTAGTTCTCA---TTAA------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------CACTCAACAACAAAAAGAGTTCAATTTTTTTT------TTTCTGAAACATTGGCTAGATTCCCAGCAA
>Homo_sapiens
------CCACCCACTTTCC---AGCTT--CCTCTGAAGTTTAAGGATATTGCTCA---TTAA------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------GAAAAAATAAAATAATATAAAAA---------------TTTCTTGAATGTTGGCTAGATTCTCAGCAA



Dog5_LTR

>MER34C_CF
------------------------------------------------------------------TGTTGAGGAG---A
AAAAAATTTTCCTCTACCCTTCTAGGTTCTTCTGGCTG-----GT--CTAAGAATCAAATTGACATAAGACAGATTAACA
GGAGAAAAACAAACAA-AAGTTTAATAACATATGTATACCTCCTGTATACATGGGAGAGACCCAGGAAAACTGAGTAACT
CCCCGAAATGGCCCAAGCCATCACCTT-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------AAATACCATCTCCAGCTAAAGACAAAA--AAGATG
TTGGGGGT------GGGGAGTCAGTTATGGGAGGTTACCAGGAAAAGCACAGTAAACAAGGGTAAGGTTGTTATGCAGAT
TTAAGTCCTTGCCTTCTCCATTGATAAGAGTTTCTAGAGATTTAGAGTCATCCTCCTCTTCCTGGTACAGAGAGGGAGAC
ACCCTTACAAATGGAGATTTCCCTTATAAATGTAAATGTCTCTTACAAAAGGGTAACTTCTACTCGGTTTTCAGAG----
CTTCTCCTGTGTCTGCAGTTTCTTAAAAATAATCAGCCTAAAATAATCCTTATGCCAAAGAGGCATATTTT-GGGGTGGC
AAATTCTGCTCCCCTTCA------------------------------------------------------------
>Canis_familiaris
GTAGTGTGAAAAAA-CTTTAGTGAAATTGGAAACTTGACAAAAA-----TATTTTT---GCCT---TGTAAGGGAGG-AA
AATAATTTTCCCTCTACCCATCTTAGTTCT--TGGCTAAGATACTCCCTGTAAT----------AAAAGACAGATTAAGA
AGAGAAAAATAAATGG-AAGTTTAATAGC--ATGTATACCTCCCATATACATAACAGATACCCAGGAAAAC----TAACT
CCTTGAAAT-GCTCAAGCCACCACTCT-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------GAATACCATTTCCAGCTAAAGACAAAAGAAATGTT
CTAGAAGA----GGAGGAGGCCAGTTAAAGAAGGTCACCAGGAAAA----------------------------------
---------------------------TAGTTTCTAGAGATTTAGAGGCATCCTTTTCTTCCTGATACAGAGAGGGAGAC
ACCCTTACAAATAGAGAGTTCCTTTATAAATGTACATTTCCTTTACAAAA-GGTAACTTCCACTTGGTTTT-GGAA----
CTTTTCCTGTGTCTGCTGTTTCTTAAAAATAATCAGCCGAGAATAATTCTTATGCCAAAGAGGCATATTTTGGGGGTGAC
AA-TTCTGCT-CCTTGAA---GCCT---CCTACACCTATGCTGAATTCTAAACCT------ATTTTATAAATTATTTT
>Felis_catus
GTGATGTGAAATAA-CCTTAATAAAATTGGAAAGTTGACAAAAA-----TATTTTA---GCTT---TGTAAGAGAGGAAA
AATAATTTTTCCTGTACCCTTCTTGGTTCT--TGGCTGAGACACTCCCTGTAATT-----AAAAAAAAAACAGATTAACA
GGAGAAAAACAAACAG-ACGTTTAATA----ACGTATATCTCCCATATACATAGGAGATACCCAGGAAAACCGAGTAACT
CCT--GAATGACTCAAATCACTATTTT-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------AAATACCATTTCCAGCTAAAGACAACAG-AAAATG
TTATGGGA--GAGGAGTAGGCCAGTTATGGGAGGTCACTAGGACAAGCACAGTAAACAAGG------TTGTTATGCAGAT
TTAA-----TGACTTCTCCTTTGACAACAGTT-ATAGAGATTTAGAGGCATCCTTTTCTTCCAGGTGCAGAGAGGGAGTC
ACCCTT-CGAATAGAGATTTCCCTTATAAATGTACATTTCCTTTACCAAAGGGTAACTTCCACTCAGTTTT-GGAA----
CTTTTCCTATGTCTGCTGTTTCTTAAAAATAATCAGCCTAAAATAAACTTTATGCCAAAGAGGCATATTTT-GGGGTGAC
AG-TTTTGCT-CCCTTCA---GCCT---CCTACACTGATGCTGAATTTTAAACCTAAGACTATTTTATAAATTATTTT
>Manis_pentadactyla
GTTGTGTGGAATCATTTTTAATAAAATCGTAAACTTGACAAAAA-----TATTTTA---GCAT---TGCAGGGGAGGAAA
AATAATTTTCCCTCTACCCTTTTAGGTTCC--TAGCTGAGACACCCCTCCAACT----------AGAAGATAGATTAACA
GGAGAAAAGCAG-----AAGTTTAATAAC--ATGTAAACCTCCTGTATCCTTGGGAGAGACCCAGGAAAACTGAGTGACT
CCCTGAAGTGGCCCATGCCATCCCCTT-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------AAATTCCATCTCTAGCTAAAGGCAAAAGAAAGATA
CTGGGGCCAGTTGGAGGTGGCCAGTTAGGGAAGGCGACCAGGAAAAGCACAGTAAATGAGGATATGCTTGTTACACAGAT
CTAAGTCCCTGCCTTGGCCATTAAT--GAGTTCCTAGAGT--TTCAGTCATCTTCCTCCTC------TACAGAGTGAGAC
GCCCTTATCCATGCAGATTTCCCTTATCAATGTAAATTTATCTTCCAAGAGGGTAACTTCTCCTTGGTTTGCAGAG----
CTTTTCCCA--TCTGCTGTTTCTTAAAAATAATCAGCCTAAAATAATCCTTATACCAAAGAGCCATATTTT-GAGGTGAC
ATATTCCACTTTCCTTCA---GCCT---CCTACACTGCTGCTGAATTCTAAACCTAAGTCCATTTTATAAATTATTTT
>Myotis_myotis
GTGATGTGAAATCA-CCT---CAGAATTGGAAACATGACAAAAA-----TATTTTA---ATTT---TCTAGGGGAGG-AA
AATAATTTTCACTCTACCCTTCTTGGTTTT--TAACTGAGATACCCCCTGTAAT----------AAAAGACAAATAAAGA
GGAGAAAAATAAAAGGGAAGTTTAATA-------------CCATGTGTACCTGGAAGATACCCAGGAAAATTGAATAAAT
CCCCTAAATAGCCCAAGCCGTCACCTT-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------AAATACTATTTCCAGGTAAAGACAA----AAGATG
TTGGAGGT--GGAAGGGAGGTCAGTTATGGGAGACTACCAGGAAGAGCATGATAAACAAGGGCGTGTTTGTTATGCAAAT
TTAAGTTCTTGTTTTCTCCATTGATGAGAGTTTCTAGAGA--TTTAGTAATTCTTCTCTTTCTGGTACAGTGAGAGAG--
------ACAAATGGAGATTTTCCTTGCAAATGTAAATGTCTGTTATAAAAGGGAAACTTCTACTTGGTTTTCAGAGTTAC
ATATTCCTATGTCTGAT-TTCCTTAAAACTAATTAGCTTAAAATAATCCTTATCCCAAACAGGCCTATTTT-AGGGTAAC
AAATTCTGCCCCTCTTTA---GCCC---CCTAAACCATTGGTGAACTTTAAACATAAGTCCACTTTATAAATTATTTT
>Rousettus_aegyptiacus
GTGGCATGAAATCAACTT----AAAATTGGAAACTTGCTGAAAA-----TATTTTA---GTCA---CGTAGGGGAGG-AA
AATAGTTTTCCCTCTACCCTTCTAGACTCT--TGACTGAGATGCCCTCTGAAAT--------------AAAAGATTAACA
GGAGAAAAACAAACAG-AAGTTTAATAAC--ATGTGTACCTCTTATATACATGGGAGAGACCCAGGAAAACTGAATACTT
CCCC-AAATAGCCCAAACCATCACCTTTAAAACTATCTCCAAAAAGCAACCCTCATACACTGCAGGTGGGACTGCAAATT
GGTACAGCCACTATGGAAAACAGTATGGAGGTTCCTCAAAAATCTATTAATCTACCATATCATCCAGCAATCCTTCTATT
GGGTATTTACCCCAAACACTTGAAAACCCATATCCAAAAAGATATTTGCACACCAATGTTTATAGCAGCATTATTCACAG
TGGCCAGGACATGGAAACAACCAAAGTACCCTATGACAGATGATTGGCTAAAGAAGCTGTAGTACATATATACAATGGAA
TATTACTCGGCCACAAGAAGAGATGAAATACTGCCATTTGTGACAACACGGATGGACCTCAAGAGAATCATGCTAAGTAA
AGTAAGCCAGACAGAAAAAGTTGAAAATCATATGATATCATTTCTATGTGGGATATAAACTTAAAAGCAACAAATGAACA
GGACAAACAAACAGAGACTCATGGACATGGACAATAGAATAGTGATTACCAGAAGGCAGGGGGTGGGGGAAGAGAGAGTA
AGTAGATAGTTAAAGGAGGTCAAATATAAGCAGGTTGAGGGAGGGTGAAGTGGATAAAGGGGATCAAATATATGGCAGCT
GAAGGAAACTGGACTTTGGGTGGTAAACACAAAATAGAATATACAGATGTCAAATGATAATGTACACCTGAAAATTATGT
AATTGTATTAACCAATGTTACCCCCAATAAACTTAATTAAAAAAAAAAAACTATCTCCATCTAAAAACAAAAG-AATATG
TTGAGGGTTTGGTGGGGAGGCTAATTAGGGGAGGTTACCAGGAAAAGCACAGTAAACAAGATCATGGTTATTATGCAAAT
TTAAGTTCTTGCTTTCTCCATTGATAAGAGTTCTAACAGA--TATAGTCATCCTTCTCTTCCTGATACAGAGAGGAAG--
------ACAAACGGAGATTTCCCTTATAAATGTAAATGTTTCTTATAAAAAGGTAACTTCTGCTCAGTTTTCAGAA---C
TTTTTCTTATGTCTGATGTTCCCTAAAAATAATTAGCCTAAA-TAATCCTTATGCCAAACAGACATATTTT--GGGTGAC
AAATTCCACTCTCCTTCA---GCCT---CCTACACCAATGTCAATTTCTAAACCT--GTCTATTTTATAAATTATTTT
>Sus_scrofa
GTGATGCGAATTCC-CCTAAATAAAATTGGAAATTTGACAAAATTCTGTTATAATA------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------GCCA---CTTACAGCAATGCTGAGTTCTAAACCTAAGTCCATTTTGTAAATTACTTT
>Bos_taurus
GTGATGTGAAATCC-TCTAAATAAAGTTGGAAATTTGACAAAAA-----CATATTG------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------GCCT---CTTACAGCAATGCTGAGTTCTAAACCTAAGTCCATTTTGTAAATTATTTA
>Equus_caballus
GTGGTGTGAAATCA-CCTTAATAAAATTTGCAGCTTGACACAAA-----TAGCTTA------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------GTCT---CTCACACCAGTGCTGAAATCTAAACGTAGGTCCGTTTTGTACGTTATCTT
>Ceratotherium_simum
GTGGTGTGAAATCA-CCTTAACAAAATTGGAAGCTTGACAAAAA-----AGCCTTA------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------GTCT---CCTACACCAATGGTGAATTCTAAACCTGAGTCCATTGTGTAAGCTTTTTT
>Condylura_cristata
GTGGTTTAAAATCA-CTCTACTAAAATAGAAAATACAGCAAAAA-----TATGCT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------GCCG---TCTATACCAATGCTGACTTATACCCATAAGTCTATTTTGTAAATTGTTTT
>Erinaceus_europaeus
GTGGCATGAAATCG-CTTTAATATTGTAAAATACATAATAGGAA-----TATTTTA------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------GTCT---T--GCA---ATGCTGACTTCTCAACTGAGTCCCATTTCTGAAACTGCTTT
>Homo_sapiens
GTGGTGTAAAATTA-CCTTATTAAAATCAGAAACTCTATA-AAA-----TATTTTA------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------GCCT---TTTACACCAATGCTAAATTCTAAACCTAATTTCATGTTGTAAATTATTTT



Dog6_LTR

>MER57LA
------------------------------------------------------------------TGTGTTAAAAGA-T
AAACTGAGGCATATTAAAAATTTTAAGAGTTTATTTGAGCAAAAAT-CGATTCAAAT-CAGGCAGCACCAAACCAGGAAG
TGGTTAGGAGCGCTCCACCGACAGGAGCTAGGGGAAAGACTTTTATAGAGAAGAGGCAGA-AGCAAAGCAAGGAAATTAT
TTGATTGGCTATAGCTTAAGCAGTTGCCTTATTTGGGAAAGCCTAGTTGGCTGTTTGTGATTGGTTGTCCTTAG-GTTTT
GA-TTTCTTAACCTTGAGGCATTTACAGGCTTAGGTTTTGGTTTGCTTACGTAGGCTGCTAAGGCATTAGAACCACCTCA
GTCTAATGGCCTCCTTGTTTAATTAATTTAACA-----------------------------------------------
------------------
>Canis_familiaris
CTTAT--TAATATCAAATTCTTTGCCAAGAGTGGGGCT----TTGGTTAGTGATTT---AGGG-----TGTTAAGAGA-T
AAACTGAGGAGTATTAAAAATTTTAAGAGTTTATTTGAGCAAAAATACAATTCTGAT-GGGGCAGCACCAAACT-GGAAG
TGGTTATGAGCACTTGGCGGACAGGAACCAGAGGAGAGCCTTACATAGGGAATGTGCAGA-AGCAAAGAAAGGAAATTAT
TTG-TTGGCTATAGTTC---------------------AAAGCCTATTGGCTATATAAGATTGGTTGTTCTTAGTGTTTT
GATTTTTGTAATCTTGAAGCATTTACCAGCTTAGACTTTGGTTTGTTTATGTAGGCCTTCAAAGCACTAGAGCCACCTCA
GACTAATGACCTCTTTATTTAATTAAATA------AAGG---GCATATAGAATTTTAATAGAGGCCACAATGGATGGGAA
AGAAAACGAGGAAAATAA
>Felis_catus
CATAT--TGATATCAAGTTCTTTGCCAAGAGTACGGCT----CTTGTTGGTGAGTT---AAGG-----TGTTAAGAGA-T
AAACTGAGGCGTGTTAAAAATTTTAAGAGTTTATTTGAGCAAAAAA-CAATTCTAATCGGGGCACTGCCAAACT-GGAAG
TGGTTAGGAGCAGTTGGCCAAC----------------------ACAGGGAATGTGCAGA-AGCAAAGAGAGGAGAGTAT
TTAATTAGCTATAGCCA-----------------------------------------------TTGTTCTCCGTGTTTT
GA-TTTTGTAATCTTGAAGCATTTACCGGCTTAGATTTCAGTTTGTTTACATAGACCTTCAAAGCGTTAGAGCCACCATA
GACTAATGGTCTCCTTGCTTAATTAAATA------AAGG---GCATATAGAATTTTGATACAGGCCACAATGGATGGGAA
AGGAAACAAGGAGGAAAA
>Manis_pentadactyla
TATATACTAATATTGAATTCTTTGTTAAGAGTTGGGCT----TTGGCTGGTTAGTT---AAGG-----TGTTAAAAGA-T
AAATGGAGGCATATTAAAAATTTT--GAGTTTATTCGAACAAAAAG-CAATTTTACT-CACTCAGGGCTAAACC-GGAAG
TGGTAAGAAATGCTCTGCCTGCAGGAACCAGGGGAGAGA--TATATAGCAAAAGTACAGA-AGCAAAGAAAGG--ATTAT
TTGATTGGCTATAGCTT---------------------AAACCCTGTTGGC--TCTGTCTTTGGATGTCTTTAGTATTCT
GA-TTTTGTAAATTTGAGGCATTTACCAGATTAGATTTTGGCTTGTTTACATAGGCCTCCATGGCTTTACAGCCACCTCA
GTCTAATGGCTTCCTTGCTTAATTAAGCA------AAAG---GCATACAGAATTTTAATAGAGGTCATGATGAATGGGGA
AGAAAACAAGGAAGAAAA
>Condylura_cristata
GATAT--TTATAGCTAACTCTTGGCCAAGAGTAAGGCT----TTGGTGGGTGATGT---ATGG-----TGCTAAGAGACT
AAATTGAGGCATAGGAACTATTTT--GAGTTTATTTGAGCAAAAAT-TGATTCTCAT-GGGGGAGCGCCCAACT-GAAAG
CAATTAGGAGC------------------CAAGGAAAGGGGTATATGGAGGCGACACAGATAGTTAAGAAAGGAAATA--
TTGATTGGCTATAGCTT---------------------AAACC-------CTGTTTGTGATTGGTTGTCTTTAATGCTTT
GA-TTTTGCACCCTGGAGATATTTCCAGACTTAGATTTTGGTTTGCCTG-ATAGGCCCCT-TGGCATTAGAGACACCTCA
GCCTAATGGCCTCCTCATTTAAATAATTCAAC---AAAG---GCATATAGAATTTTAATAGAGGTCACAATGGATGGGGA
AGAGAACCAGAAGGAAAG
>Solenodon_paradoxus
GCTAT--TAATATCAAATTCTTTGCAAATTGTAAGACT----TTCGTTGGTGATTT---AGGG-----TGTTAAAAGC-T
AAACAAAGGCTTACAAAATTTTTT--AAGTTTATTTGAGCCAAAAT-CTGTTCTAATAG----------------GGCAG
TGGTTTGTAGCCTCCTGGAGGTCAGGAGTCCAGGGAAGACTTATAGGGAGAAAATGCACA-AACAAAGAAGGGAAATGAC
TCAATTGGCTATAGCTG--------------------GAAGTC----TGGTTGTCTGTGATGGGTT-CTCTCAGCATTTA
GATTTCCCTGGAC--GAGGCTTGCAGAGG-TTAGAGTTTGGCTTGCTT--GTAGCCTCCTGTGGCATGAGGGCCATTTGG
CTCTCAGGGCCTCCTTGTTTCATCACTTTAAC---AAAG---GCATGTAG-ATTTCAACAGAGGCCACAATGAATGGGGA
AGAAACCTAG-----AAG
>Sus_scrofa
CGTAC--TGATATTCAATTCTTTGCCAACAGTAGGGCT----TTGATTGTTGATTT------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------CAGG---GGATATAGAATTTTAATAGGGGCCACAATTGATGGAGA
AGAAAATGAGGAGGAAAG
>Tursiops_truncatus
CATAT--TGATATCAAATTCTTTGCCAAGAGAAGGGCTTTGGTTGGTTGGTGATTT------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------AAGG---GTATACAGAATTTTAGTGGGGGCCACAAAGGATAG---
AGAACGCAAGGAGGAAAG
>Equus_caballus
CATAT--TGATATCCACTTCTTTGCCAAGAGTAGGGCT----ATGGTTGGTGATTT------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------CGGG---GCGTATAGAATTTTAGTGGAGGACGCGATGGATGGGGA
AGAAAACAAGGAGGAAAG
>Tapirus_indicus
CCTGT--TGGTATCAAATTCTTTGCCAAGTGTATG-CT----TTGGTTGGTGGCTT------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------AAAG---GCATGTAGAATTGTAGTGCGGGCCACAATGGATGGGGA
AGAAAATAAGGAGGAAAG
>Myotis_myotis
TATAC--------CAACTTCTTTGCTAAGAATAGGGCT----TTGGCTGGTGATCG------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------AAGG---GCACACAGAACTTTAGCGGGGGTTGCAATGGCTGGGAA
AA-----CAGGAGGAGAA
>Rousettus_aegyptiacus
TATGT--TGATAACAAATTCCTTGCCAAGAGCAGGGCA----CTGGTGGATGATTT------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------AAGG---GCAGATGGAATTTTAGTGGGGACCGCAATGGATAGGGG
GTAGAATCGGAAGGGAAG
>Homo_sapiens
AATAT--TGATATGACGTTTTTTGCCAAGAGCAGAACT----TTGGTTGGTGATTT------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------GAGC---GCAGGCAGAATTTAAATTCAGGCTACAATGGATGGGGA
GGAAAATGAGGAAGAAAG



Dog7_LTR

>MER57LA
---------------------------------------------------------------------------TGTTA
AATTAATTAAACAAGGAGGCCATTAGACTGAGGTGGTTCTAATGCCTTAGCAGCCTACGTAAGCAAACCAAAACCTAAGC
CTGTAAATGCCTCAAGGTTAAGAAATCAAAA-CCT-AAGGACAACCAATCACAAACAGCCAACTAGGCTTTCCCAAATAA
GGCAACTGCTTAAGCTATAGCCAATCAAATAA-TTTCCTTGCTTTGCTTCTGCCTCTTCTCTATAAAAGTCTTTCCCCTA
GCTCCTGTCGGTGGAGCGCTCCTAACCACTTCCTGGTTTGGTGCTGCCTGATTTGAATCGATTTTTGCTCAAATAAACTC
TTAA-AATTTTTAA-TAT--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------GCCTCAGTTTATCTTTTAACACA---------------------------------------------
--------------------------
>Canis_familiaris
GCTCTGTGCAGAGTTGCTAATAAAACTGCAGCACTGATTG------GGGTGGT-------C--TT---CATC---TGTTA
GATGAATTAAACAAGGAGGCCATCACACTGAGGTGGCTCGAAGGCCAT-GGGGCCCATGTAAGCAAACCCAAACCTAAGC
CTGTAAGTGCCTCAAGGTCATACCATCAACA-CGTGAAGGACAACCATCCACAAACAGCCAACTAGGCT-----------
---------TTCAGCGAGAACCGGAC-AATAACTTTCCTTACTCTGCTTCCACCTTTTTTCTAGAAAAGTCTCGGCCTGA
GCTTGGGTCGGTGGAATGCGCCTCACCGC-TTCTGGTGTGGTGTGGTCTGATGTGAGTAGAGTTTTTCTCAAAGAAACCC
TTAAGAAATGTTAA-TAT--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------GCCTCAGTTTATCTTTCAAGGCA----TTT-----AAAAAACAAGGCCTCTTCTAGAAGGTGGCACGA
GGCCCA------CGGCCCTTTCCCTG
>Felis_catus
GCTCTGTGCACAGTTGCTAAGAAAACGGCACCGCAGACTG------GGGTGGT-------C-TTT---CGTT---T-TTA
AATTAATTCAGCAAGAAGGCCGTCACACTGAGGTGGTTCTAATGCCACGGACACCTTTGTAAGCAAACCCAAACCTAAGC
CTGCAAGTGCCTCAAGGTTACAACATCAACG-CATCAAGGACAACCACTCACAAACAGCCAGCTAGGCT-----------
---------CTAAGCTATAGCCGGCC-AATAA-TTTCCTTACTTTGCTTCCACCTTTTCTCTAGAAAAGTC-TCAGCCGA
GTGCCTGCCCGTGGAACGCTCCTAAACAC-TCCCAGTTTGGCACGGTCTGATAGGAATAGAATTTTGCTCAAATAAA--C
TTAC-AGTTTTTAAATATGCCTCAGTTTATCTTTAAATTTTTTTTAATGTTTATTTTATCTTTGAGAGAGAGAGAGACAC
GGAGTGCAAGTGGGGGAGAGGCAGAGAGAGAGGGAAACACAGAATCCGAAGCAGGCCCCAGGCGCTGAGCTGTCAGCACA
GAACCTGACTCGGGGCTCGAACTCATGAACCACGAGATCATGTCCTGGGCCAAAGTCAGACGCTTAACTGGCTGAGCCAC
CCAGGCGCCCCAACCTCAGTTTATCTTTTAA--TG---GGTT---CAAAGCAACAGGGCCTCTCCTGGGAGATGGCATGA
GGCACA-----GAACCCTTTGCCCTG
>Manis_pentadactyla
GCTCCACAGGCAGCTGCTCAGAAAAC-----CGCCGATTG------GAGTGGC-------C-TTT---TGTT---TGTTA
AATTAATTAAGCAAAGGGTCCATTAGACT--GACGGCTCTAATGCC-CAATAGCCTCCCTCAGCAAACCCAAATCTAAGC
CTATGAATACCTCAAGGTTCTGAAATCAAAGCCCCTAAGTACGGCCNNNNNNNNNNNNNNNNNNNNNNN-----------
---------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNN--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------NNNNNNNNNNNNNNNNNNNNNNN---NNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNN
>Myotis_myotis
CTTCCAAAGGAAGTTGCTAAGAAAATGGCAGTGCTGATTG------GTATTGT-------CTTTT---TATT---TGTTA
AACTAATTAAACAAGAAGGCCATTAGAGTGAGATGGCTGCAATGCTTTGAGGGCCTACATAGGCAAACCAAAATCTAAGC
CTGTAA------CAAGATTACAAAATCAAAA-CCCCAAGGATAACCCATCACAAATAGCCAACCAGGCT-----------
---------TTAAGCTATAGCAAGTT-AATAA-TTTTCTTACTTTGCTTCTGCCTTTTCTCTGTAGAAGTC-TCTTCCAA
GCTCTGGTTGGTGAAGCACTTCTATCCAC-TTCCAGTTTGGTGCTGCCTGATCTAACTTTATTTTTTCTTACATGAACTC
TTAA-CATTTTTAA-TAT--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------GCCTTGGTTTATCTTTTAA--CA---TGTT---C-AAACCACAAGGCCTCTCCTAGGAAGTGGCATGA
GGCAAG-----TTGCCCTTTTCCCTG
>Rousettus_aegyptiacus
GCTCTAAGGAAAGCTGCTAAGAAAACTGCAGTGCTGATTG------GGATGG--------CTTTT---TATT---TGTTA
AACTAATCAAACGAGGAGCCCACTAGAAT-AGGTAGCTCTAATGCTGTCAGGGTGTACGTGAGCAAGCCAAAATCCAAGC
CTGCAAATGCCTCAAGGTTATGAAATTAAAA-CCCTAAAGGCTACCAATAGCAAATAGCCTACTAGGCT-----------
---------TTAAGCTACAACCAGTC-AATCA-TTTCCTTACTTTGCTTCTGCTTTTTCTCTGTAAAAGTC-TCTCCCCA
GCTCCTGTTGGTAGAGCACTCCTAACCAG-TTCTGATTCGGTGCTGCCAGGTTCAAACTTATTTTTGCTAAAATGCTTTC
TTAA-AATTTTCAG-TAT--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------GCCTTAGTTTATCTTTTAA--AA---TGTT---C-AAATGACAAGGCCTCTCCTAGGAGGTGGCATGA
GGCACA-----CTGCTCTTTTCCCTG
>Sus_scrofa
GCTCCGTGGAAGGGTGCTGGGAAAACGGCAGTGCTGATGG------GGGCGGC-------C-TCT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------GGTT---C-AGATAATAAGGCCTCTCTTAGG-GGTGGCACGA
GGCACA------CCTGCCATCGCCTG
>Bos_taurus
GCTCCGTGGAGTGTTGCTGAGAAAATGGTGGGGCAGCTTGGTGGCAGGGTGGTGGGGGAGC-TTT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------TGTT---C-AAATAACAAGGCCTGTCTTAGAAGGTGGCTCAA
GGCCCA------CTGGCCTTTCTCCG
>Equus_caballus
GCTCCGTGGAAAGTTGCTAAGAAAACTGCAGTGCTGGTTG------GGGTGGC-------C-TTT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------CGTG---C-AGATAAAAAGGCCTCTCCCAGGATGTGTCATGA
GGCCCACCTCCTGGCCCCTTTCCCTC
>Ceratotherium_simum
GCTCCGTGGAAAGTTGCTAAGAAAACTGCAGTGCTGG-TG------GGGTGGC-------C-TTT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------CCTT---G-AAATAACAAGGCCTCTCCTAGTAGGTGGCATGA
AGCACA---CCTGGCCCCTTTCCCTG
>Condylura_cristata
GGCCGGTGGAAAGCTGCTAAGGACTCTGCAGAGTC-CTTG------GGGTGGG-------C-TTT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------GTT---C-ACCTAGCAAGGCCTCT-GTAGGAGGTGGCAAGA
GGCACA-----TTGTCCCTTTCCTTG
>Erinaceus_europaeus
GCTCAATGGAAAGTGAATAAGAAAACTGCAGTAATGATTG------AGGTGGG-------C-TTT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------GCTT---C-AAAGAGCA------CTCCTAGGAGCTGGCTTGA
GGCATG------------CTCCCCTA
>Homo_sapiens
GCTCTGTGGAAGGCCACTAAGAAAACTGCCATGCAGTTCG------GGGTGGC-------C-TTA---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------AATT---C-AAATAACAAAGCCTATCTCGGGAGGTGGCGTGA
GGCATG----------------CCTG



Dog8_LTR

>MER34C_CF
----------------------------------------------------------------------TGTTG---AG
GAGAAAAAAATTTTCCTCTACCCTT-CTAGGTTCTTCTGGCTGGT--CTAAGAATCAAATTGA----CATAAGACAGATT
AACAGGAGAAAAACAAACAAAAGTTTAATAACATATGTATACCTCCTGTATACATGGGAGAG------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------ACCCAGGAAAAC-TGAGTAACTCCCCG-AAATGGCCCAAGCCATCACCTTAAATA
CC--ATCTCCAGCTAAAG--ACAAAAAAGATG-TT---------GGGGGTGGGGAGTCAGT-----TATGGGAGG-----
TTACCAGG-AAAAGCACAGTAAACAAGGGTAAGGTTGTTATGCAGATTTAAGTC-CTTGCCTTCTCCATTGATAAGAGTT
TCTAGAGATTTAGAGTCATCCTCCTCTTCCTGGTACAGAGAGGGAGACACCCTTACAAATGGAGATTTCCCTTATAAATG
TAAATGTCTCTTACAAAAGGGTAACTTCTACT-CGGTTTTCAGAGCTTCTCCTGTGTCTGCAGTTTCT---TAAAAATAA
TCAGCCTAAAATAATCCTTATGCCAAAGAGGCATATTTTGGGGTGGCAAATTCTGCTCCCCTTCA---------------
--------------------------------------------------------------
>Canis_familiaris
TTATCTTACCCGTCCAAAACCTAGCCATCTTTGAAATCAGCCTGG---------CTCG--------T---TGCAGGGGAG
GAAAAAGAATTTTCCCTCTGCCCTT-CTTGGTTCT--TGACTGA-------GAGCTCCTGTAA----TAAGAGATAGATG
AGCAGGAGAA----AAACAGAAGTTGAGTAAC--AGGTACACCTGCT---TCCGTGAGAGCG------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------ATCCAGGAGAACTTGAGGAACTCCCTGAAAATGGCCCAAGCCGTCACCTTAAATA
TG--TTCTCCAGCTACTGACACAAGAAAGATGATT---------GGGGCTGGGAG-------------------------
---------AGAAGACCTGGAAAC-AGGATAAGATTGTTATGCAGATTTAAGTTGGGCTTTGTCTCC--CGATAAGAGTT
TCTTGTGATTTAGTGTCACCCTCCTCTTCCTGGTGCTGAGAG-GAGACACCCTTTCAAGTGGAGACTTACCTTGTAAATG
TAAATTTCCCTTC------AGTAACTTCTACG-TGGTTTTCAGAGCTTTTCCCCTGCTTGCTGTTTTTTTTTAAAAATAA
TGAGATCAAGATAATCCTTATGCCAGAGAGGCAGATTTGGGGGTTGCAGATCCTGCTCCCC-------TCCT---CAT--
--TAGCCAGGTCTCACAAATTAGGGAGTGAGTTCCAGCCCTGGACAG----GGTTG-CAGTT
>Felis_catus
TTATTTTACCCTTTCAAAACCCATCCATCCTTGAGATCAGCCTGG---------CTGA--------T---TGTAGGGGAG
GAAAAATAATTTTCCCCCTGCCCTT-CATGGTTCT--TGGCTGA-------GACCTCCTGTAA----TAAAAGACAGATT
AACAGGAGAAAAACAAAC--AAGTTTAGTAAC--ATGTCCACCTCCTGCATGCATGAGAG--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------ATCCAGGAAAACTTGAGGAACTTCACG-AAATGGCCCATGCCATCACC-------
----TTTTTCAGCTTAAGACACAAGAAAGATGGTT---------GGGGCTGGGGTGTGTGTGTGTGTGGGGGGGGGGGGT
TAGGTGGG-GAAAGACCTGGAAAC-AGGGTAAGGTTGTTATGCAGGTTTAAGTT----TGTGTCTCCTTTGATAAGAATA
TCTTGTGATTTAGTGTCACCTTTATCTTCCTGGTGCTGAGAG-CAAACACCCTTCCAAATGGAGATTTCCCTCGTAAATG
TAAATTTCCCTTC------GGTAACTTCTATTCCGGTTTTCAGCTCTTCTCCTGTGCCTGCTGTTTTA-AAAAAAAATAA
TGAGATCAAGATAATCCTTATGCCGAAGAGGCAAGTTTCGGGGTGGCAGATTCTGCTCGGT-------CCCT---CAT--
--TAGCCAAGTCTCACAACTTAGGAGGTGAGTTCCAGCCCTGGACAG----GGTTG-CACTT
>Manis_pentadactyla
TTATTTTACCCTTCCAAAACCCATCCATC-TTGAGATCAGTGTGGCTGTCTTATCTGA-----TCCT---TGTAGGGGAT
GAAAAATGATTTTCCCTCTGCCCTT-TTAGGTTCT--TGGCTGATACCCCCACCCCCTTGTAA----TATA----AGATT
AACAAGAGAA----AAATGGAAGTTTAATAAC--ATGTATACCTGCCATATACATGGGAGAG------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------ACCCAGGAAAAC-TGCATAACCCTCTG-AAATGGCCCAAGCCATTACCTTAAGTA
CC--TTCTTCAGCTAAAGACACAAGAAAGAT--TT---------GGGGGTGGGGGTGGCGA-----TGTGGGGGTATCAC
TTGCCAGGAAAAAGCCTGGTAAGCAAGGGTAAGGCTGTTAAGCAGATTTAAGTTGGGTCCCTTCTCCACTGATAAGAATA
TCTTGTGATTTAGAGTCACCCTTCTCTTTCTGCTGCTGAGAG----ACATACTTACAAATGGAGATTTCCCTTATAA---
----------------TAGGGTAACTTCT----CAGTGTTCAGAGCTCCTCCTGTGACTGCTCTTTTT---AAAAAGTAA
CTAGCTCACAATAATCCTTCTGCC--AGAGACATATTTTGGGGTGGCATGTTCTGCTCCCTGTCA---CTCT---CAT--
--CAGTCAAGACTGACCAATGAGGAATCAAGCTCTAACCCTGGACAG----GGCTG-CACCT
>Condylura_cristata
TTTTCTTACTCTCTCAAAGCTCATCCTTC----AGATCAGCTT-----TCTTATCTGA-----CTTT---CGTAGGAGTG
GAAAAATAACTTTCTCTTTACCTTT-TTAGGTTAA--TGGTTTAC------ATACCCATGCAA----TGAAAGACAGATA
AACAGGAGAAAAACAAACCAAAGTTCAATAATGTGTGTACTGCTGGTACGT-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------ACCCTGGAAAAC-TGAGTAACTCCCCG-CAGTGGGCCAATACTTCACCTTAAATA
CCTTTTTTCCATCTAGAGATCTACCAAAGATG-TT---------GAGGCTGGGGAGGGT-------TACGGG--------
---------GAAAGCACCGCAAAGGAGGGCTTGGTGGTTCTGCCGGCTTGAGTC-CCCATCTTCTCCATCGATAAGAGTT
TC--ATGATGTA--GTCTTCCTTCTCTT-CTGTTACAGAGAA---CACACCCTTACAATGGGAGATTTCTCTTATAA---
---ATATCTTTTATCAAAGTATGAGCTTAACT-CCATTTTCAGAGGTTTTCCTGTGCCTGCTCTTATT---TAAAAACAA
CCAGCTTAAGAGACTCCTTATGCCAAAGAGGCATATTTTGAAGTCATGTGTAGCGCCCCCTCT-A---CTCT---CATTA
GCTAGCTAATTCTTACAAATTAGGAAACAAGTCCCAGCCTCAGGTATGTACGGTTG-CACCT
>Solenodon_paradoxus
TTATCTTACCCTTTCAAAACTCATCCACTTTTGAGTTT----TGGTTGTCTTATCTGA-----CTCT---TGTTGGGGAG
GAAAAATAAATTTTCCCTCATTTCTACTTGATTCT--TGGCTTAG------ACCCCGCTCCAGTTTCTTACAGGTAGGTT
AATAGGAGAAAAACAAACAGAAATTTAATAACACATATACCTTTTGTATACATGGTGATAACTGGAATGCAGTAAGCCCA
GTCATTATGAATTTAAGTTTATCAGCTTGAGGATTTTAATCTGGACATCAGTAGACTGCCCACCACTGCAATGAGAGTTG
AACTTTTATGCATTTTCTCTGGGTTGAGATACAGGCAAAGAAAGACAGTCACTCTCAGTGTGAATAAAGGCCCTTAAGTA
ATCCTAAGCAGTCTGGTTTCTGTCTTTGTCACGTTAGATGTTAGGTCCCTCCAACTCAGTGGCTCTGGGATATTATCTGG
TGATCAGCAGAGGCAAGCACAGGATGATTAAAATTTATCTAAACTCAGAGGAATGTCATGGGAATCTTAGGGAGTACTCA
AAAGCTTCTCTCTGATAGTTCCTATCTGGCAGATGGGGTGAGATGCGCCTGCTTAATCAAGCCAATGCATTCTTCCATGG
TTTTTCCATAGAACTAGGCCAGCTTGTTCTGACTTCATCCTCTGCAAGTTCTTCTGGACCAGGCAGAGGGGGTCCCAGGA
GTAAATTTCGTTTGCAGTAGGAAATGCAAAGAAAAACATGAGTAACTCCTCG-AAAAGGGCCAAGTCCTCATCTTAAATA
CCTTCTTT--AGTGAAAGGCATG--GAGGGTG-TTGGATAATGGGAGGTTATGGGAGGC------TACCTGG--------
---------AAAAGCACAGTAA----------GGTCGGCCTGCAGAAGTAAGT--CCTGTCTTCACCATTGAGTTGAGTT
TCTTGTGATTTTGAATCTTCCTTCTCTTCCTGTGCTTAAAGAGAG-ATAGCCTCACCAAAGGAGTTTTCCTTTGTGA---
ATGTAAATGTCTTGCAAAATGGTAAATTCTCC-TCGGTTTCAGAGCTT---CTGTGTCTGCTACCACT---TAAAAATAA
CAAGCTCGAGATCATCCTC-TGACAGAGAGGCATAATTTGGGCTGGCATATTCCAGT-CCTCTGA---CTCT---TAT--
--TAGCCTAGTCTTAGAAACTAGGAAGCACGTCCCAGAGCTGGATAG----CATTG-CACTT
>Sus_scrofa
TTATTTTATCCTTTCAGAACCCATCCATC-TTGAGATCAGCCT------------TGA-----CCTT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TAG--
--CAGCCAACCCTTTCAAATTCGGAAGCCAGTCTCAGCCCTGGACAA----GGTTG-CCTCT
>Bos_taurus
TTA-----TCTTTCCAAAACCCATCCATC-TTGAGATCAGCCTGGCTGTCTTATCTGA-----CTCT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TAT--
--CAGCCA-GCCTCCTAAATTAGGAAGCAGGTCCCAGGCCTGGACAG----GGTTGCCCCCT
>Equus_caballus
TTCTTTCACCCTTTAAAACTCCGTCCGTC---------------------TTA-CTGA-----CTC--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------AT--
--CAGCCGAGTC--ACTGATGAGGAGGCCAGT-----CCCCTGACAG----GGCCG-CCCGT
>Tapirus_indicus
TTATCTTACCCTTTAAAAACCCATCCATC---------------------TTACTTGC-----CTCT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------CTT--
--CCGCCAAGTCTCACAAATTAGGAAGCAAGTCCCAGCCCCGGACAG----GGTTG-CCCCT
>Myotis_myotis
TTATTTCACCCTTTCAGAACCCATTCATC-CTGAGATCAGCCTGGCGGTCTTATCTGA-----CTC--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------AT--
--CAGCCAAGTCTCACAAATGAGGA-----------------------------TGACCCTT
>Rousettus_aegyptiacus
TTATTCTGCCCTTTCAAAACCCATGCATC-ATGAGATCAGCCTGGCTGTCTTATCAGA-----CTCT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------CAT--
--TAGCCAAGTCTCACAAATTAGGAAGCAAGTCCCAGCCCTGTACAG----GGTGG-CCCCG
>Homo_sapiens
ATAGCTTACCCTTTCAAAACCCATCC----------------TGGCTGTCTTATTTGA---TTCTCT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TAT--
--CAGCCAAGTCTTACAAATCAAGAAGCAAGCCTCAGCCCCAGATAG----GGTTG-CACCT



Dog9_LTR

>MER34A_CF
------------------------------------------------------------------------TGTAGGGG
AGGCAAAATTTTACCTCTACCCTCTTAGGGTTTTTCAGCTGGGCCTGAGAATTAAATTGACATAAGACAGATTAACAGGA
GAAAAGCATACAAATTTATATAAGTTTTACGTGACATGGGAGCCCTCATAAGGAAATGAAGACCCAAAGAAGTGGCAAAA
CCTAAATGCTTTTATACTAGGTTGAACAAAGAGAGGCAA-----TTGTGGAAAAGTAACTAAAATATATGGGG---AGGC
TAAAGGAAGATAAGAGTTATT------TTAACAAGGTCTGTTTGTACAGAATTCTCTCGGCCTCGACTCCCC----GTCT
CTGGTGATAAGAATG-TTTCTTTCCTCCTGGTATAGGGAGGACATCTTTCACATGGGAGTTTTATCTCCTGCTTTCAGGA
AGAAAAGGGAAGGTCAGAGC---GNCCTTCTTGCACCTGCTGTTTTTCAAGTGCCTTTAGCTCAAAATAATCCTTATGCC
AAAGTGGCATATTTTGGGGTGGCATATTCTGCCACCCTTCA---------------------------------------
----------------------------------------------------------
>Canis_familiaris
TGTAGATCTGGTAATATTTATTTATATTCTTGCTTAGTTT------CTTTTCTTG------A---GGTT---TGTAGGGG
TAGAAAAATT-----TCTTCCCTTCTA-AGTTCTTTGGCT-CGTCTAATAATTAAATTGGCATAAGACA--TTAACAGGA
AAAAA----ACAAGTTTA---ATTTCATATAT---AT-GGAGCTC-CATAAAAATACACAACT-CAAAGAAGTGACTGTA
GCAAGCAACTAT-----------------------ACAATACATTTGTGAAAAATTAAC-AAGACAAAGAGGT-TTAGGC
TTGAGGTAG---TAAATTAGTGAAGAAGTAACAAGGCTTGTCTATACAGCCTTCTCA-GCCCTAAATTCCCTAACCAACT
CTGGTGATAAGGATGACTTCTTCCCTCCTGATACAGGAGAGG----------------GATTTATTTCCAGCTTTCAGGG
GGACAAAAGAAGGTCGGAGTCGGAGTGTTCTTATACCAACTGTTTCTTAGGTAACTTTAGTTCAAAATAATCAGTATCCT
GAAGTGGCATATTTTGGGGTGACATATTCTGCTCCCCTGCA---GGTT---TGGCATATTTTGGGGTGACATATTCTGCT
CCCCTGCAGGTTTGTCATCTCTGTCCCTGAAG---AACTACCATTTTGAACTTAGTCT
>Felis_catus
TATAGATCTGGTGATAGTTATTTATATTCTTGTTCAGAATCTTCAACTTTTCTTG------A---GGTT---TGTAGGAG
CAGAACAATT-----TCTTCCCTTCTA-GTTTCTTTGCCT-TGTCTAATAATTAAATTGACATAAGACAGATTAACAGGA
GTAAA----ACAAGTTTA---AATTCATACAT---ATGGGAGCTT-CCTAAAAATATGAGACTCCAAAGAAGTGACCAAA
GCAGGCAACTTTTATACC---TTTTAGACAGGAAGGCAATCCATTTATGAAGAATTGAC-AAGACAAGGGGGT-TTGGGC
TTAGAGTAG---TAAATTAGTGAAGAAGTAACAAGGTTTGTTTATACAGCCTTCTCAGGCCTTATATTCCCT----ATCT
CTGGTGATAAGGATGCCTTCTTCCCTCCTGGTAGAGGAGGGGGAC------------------ATTTCCTACTTTCAGGG
GGACAAAGGAGCATCAGAGT------GTTTTTATACCAGCTGTTTCTCGGGTAACTTTAATTCAAAATAATCCAGATGCC
AAAGTAGCACATTTTGGCGAGCCA-ATTCTGCCCCCTGTCA---GGTT---TATCATCTATTC-----------------
------------------CTCTGTCCCTG------AACTACCA-TTTGCACTTGGTCT
>Manis_pentadactyla
TGTAGGTCTGGTAATGTTTACTTATATTCTTTTTCAGTTACTTTTGTTTTTCTTG------A---GGTT---TGTAGAAG
CAGAAAATTT-----TCTTCCCTTCTG-AGTTCTTTGGCT-GGCCT---AATTAAATTGACATATGACAGATTAACAGGA
GAAAA----ACAAGTTTA---ATTTTGTACAT---ACAGGAGCCC-CATAAAAATATGAGAGTCAACAGAAGTGACTAAA
GCAACCAGCTTTTATACC---TTTTTGACAAGGAACCAATAAATTTGTAAAGAATTGAC-AAGACAAAAGGAT------T
TTGGGGTAG---TACGTTAGTGAA---ATTGCAGGGTTTGCTTATACAGCTTTCTCA-GCCCTAAATTCCCT----ATCT
GTGGTGATAAAGATGCCTTCTGCCCTCCTGGAACAAAAAGGT--ACTTTCAC----GGGATTTATTTCCTGCTTTCGGGG
GGTCAGAGGAGTGTCAGAGT------GTCCTTGCAAGTGCTGTTTCTCCAGTAACTTTATTTCAAAATAATCAACATGCC
AAAGTGGCATATTTTGGGGTAGTCTATTCAGCTCCCTTCCA---GGTT---TACCATCTGCTA-----------------
------------------TTCTATCCCCAGAG---AACAACCATTTTGGACTTGGCCT
>Myotis_myotis
TGTAGGCCTGGTAATGTTTATTTCTATTCTTATTCAGTTATTTTTGGTTTTCTTT------A---GCTT---TATAGGCG
TGGAACATT------TATTTCCTTCTA-GGCCCTTTGGCT-GATCTAATAATTAAACTGGCGTAAGACAGATTTACAGGA
TAAAA-CCCCCAAATTTA---ATTATTTATGT---ATGGGAGCCC-CATAAAGACATGAGGCT-CATAGAAGTGAACAAA
GCAGGCAGCTTTCATAGC---TTTTAGACGAGAGAACAATCAATTTGTGAAAAATTGAC-AAGACAAAGGGGG-TTGCGC
TT----CAC---TAAATTGGTGAAGAAGTAACAAGACTTGTTTATATCGTTTTCTCG-GCCCTAAATTTCTT-----ATT
CCGGTGGTAAGAATG-CCTCTGCCCTTCTGATACAGGGAGGGTATCTTTCACATGGGAGATTTGTTTCCTGCTTTGGGGG
GAACCAAAGAGGGTCAGAGT---GTCCTTCTTGTACTGGCTGTTTCTCAAGTAACTTTAATTC-AAATAATCAGTATGCC
AACGAGGCATATTTGGGGCAGATCTGTTCTGCTCCCCTTAA---GGTT---TATCATCTATTA-----------------
------------------CTGGATCCCTGGAGCAGAAATAGCATTTTGGACTTGGACT
>Rousettus_aegyptiacus
TATAGGTCTGGTAATATTTATTTCTATTCTTATTCAGTTACTTTTGGTTTTCTTA------A---GGTT---TATAGGGG
TGGAAAAATT-----TTTTTCCTTCTA-GGTTCTTTGGCT-GGTCTAATAATT----TGACATAAGACAGCTTAACAGGA
GAAAA----ATAAATTTA---ATTTTGTACAT---ATGGGAGCCC-CATAAAAATATGAAACT-CAAAGAAGTGAGCAAA
GCAGGCAGCTTTTATACA---TTTGAGACAAGGAAACAATACA-TTGTGAAAAATTGAT-AAGAGAAAAAAGGTTTAAGC
TT----CAC---TGAAGTATTGAAGCAATAACAAAATTTGTTGATACACACTTTTCA-ACCCTAAATTCCCT----ATTT
CTAAGGATAAGGATGTCTTCAATCCTCCTGATACAGGGAGGGTACCTTTCACATGGAAGGTTTATTTCCTGCTTTTAGGG
GGACAAAGGAGTATCAGAAT---GTCATTCTTGCGCTGCCTGTTTCTCAAGTAACTTTAACTC-AAATAATTATTATGCC
AAAGTGGCATATTTTGGGGTGATACATTTTGCTCCCCATCA---GGTT---TTTCATCTATTA-----------------
------------------CTCTAGCCCCAGAGGAAGACTGCCATTTTGGACTTGGTCT
>Sus_scrofa
TGTAGGTCTTGTAATATTTACTTTTCTTCGTACTCAGTTAACTTTGTTTTTCTGG------A---GGTT-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------TATGATCTATTA-----------------
------------------CTCTCTCCCTGGAGGAGAACTACCATTCTACACTTGGTCT
>Bos_taurus
TGTAGGTCTGATAATATTTACTTTTATTTGTATTTAGTTAATTTTGTTTTTCTGG------A---GTTT-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------TATGCTCTATTA-----------------
------------------CTTCCTCCTTGGAG---AACTACCATTTTGCACTTGGCCT
>Equus_caballus
TGTAGGTCTGGTAATATTTCTTTCTATTCTTATTTAGTTAATTTTGTTTTTCTTG------A---GGTT-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------TATCATCTATTA-----------------
------------------TTCTATCCCTGGAGGAGAACTGCCATTTTGGACTTGGTCT
>Ceratotherium_simum
TGTAGGTCTGGTAGTATCTCTGTCTCTTCTTATTTAGTTAATTTTTTTTTTCTTG------A---GGTT-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------TATTGTCTGTTA-----------------
------------------TTCTATCCCTGGAGGAGAACTGCCATTTTGGACTTGGTTT
>Condylura_cristata
TGTAGGTCTGGTGATTTTTATTTCTGTTCTTCCTCAGGTAATCTGGCTTTTGTTGTTATTTT---AGTT-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------TATCACCTGTTG-----------------
------------------CTTTATCCCCA-AGGTGAACTATTGCTTTGAACTTGGTCT
>Uropsilus_gracilis
TGTAGGTCTGGTGATTTTTATTTCTATTCTTATTCAATTAATTTCTGTTATTTTTTTT---A---ACTT-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------TATCAT-----------------------
--------------------CTATCCCTG--GCATGACTATGGTTTTGGACTTGGTCT
>Homo_sapiens
TGTAGGTCTGGTAGCATTTATTTTTATTCTTACTCAGTTACTTTTGTTTTTCTTG------A---GGTT-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------TA-CTTCTATTA-----------------
------------------CTCTGTGCCCAGAGGAGAACTATCATTTTGGACTTGGGCT



Dog10_LTR

>MER34A
------------------------------------------------------------------------TGTAGGGG
AGG-AAAAACTTTTCCTCTACCCTCTTAGGTTCAGTGSCTGGGGGCCTGCGAATTAAACTGACAAAAGACAGATTAACAG
GAGAAAAGGCATACAAATTTTATTTAATATTT-TACGTGCACGGGAG-CTTCACA----GAAAAGAAGTGAAAACCCAAA
GAAGCGGTTAGACCTGGGGGCTTATATACCATTTTAACAAAGG-GC----GATAAATT-GTGGAGAAGTGACAAGACAAA
GGAAAAGGGGTTTGGGCTTCTAGGGGCGG------------TAAATTGTGGGAAG-----GTGACTAGGAAATATAT---
--------GGGGGAACTAATGGAAGATAAGGGTTATTTTAGTAAGGTTTGTTTATGCAGACTCATCTTGGTGTCGACTCT
CCGTCTCCGG--TGATAAGAGTCGCTCTCCTCTTCCTGGTACAGGGAGGGCACCTTCACAAAGGGAAATTTATGCCCTGC
TTTTAGGCAGAWAGGGGGAGGGCAGAGAGCTCTTCCTGCATCTGCTGTTTCTCAATTGCCTTCAGCTCAAAATAAT-CCT
TATGCCAAAGTGGCATATTTTGGGGTGGCATATTCTGATCCCCTTCA---------------------------------
--------------------------------
>Canis_familiaris
GATTTCTTCTTTAAATGAG------------TCCTAGTGCCATACTGATAACTACTACGTGA---GAGA---TGTAGGGG
AGG-AAAAAGTTCTCTTTGAAGTTTTTAGGGTCC-TGGCT--GGGTCTAAAAATAAATCTGAC-AAAAACAGATTAACAA
GAGAAAA-GCACACAAATTTTATTGAATTTTTACACAAACATGGGAGCCTTTATA----------AAATGAAGACTTA--
-AAGTGGCCAGAGCTGGAAACTTTCCTATCTTTTAGACAAAGAAAA----AATTAATCTGTGAATAATTGACAAGAC---
---AAAGAAGTTTGGG---CTAGAGGTAGCCCAGCTAGAACTAAGTAGTCCTTATTTTCCTTAACTAAGACAAGAATTTC
CTTAATTAAGATAAGAACAAGGAAGATAAGGGTTATTTTCAGTAGGTTTATA--TGAAGATTCCTCT--------AGTAC
CTTTTTCTGGGCCTATAAGAGTATGTCTCCAAG-------------------------AAAAGGAAAATTTACTTCCCGC
CTTTAGGCAGAAAAGG--------GAGAACTTT-TCTATGTTTACCACTTCTCAAGTGCCTTCAGTTCAAAATAAG-TTT
TATATCAAAGAGGCATATTTTGGGGTGACATATTCTGGTCTCCTTCA---GGAA---TTATTTCCCTCTCACAGAATGTA
AGCATCATCACTGGTGTCTTCCTCACATCTGC
>Felis_catus
GATTTCTGGTCTAAATGAG------------TTCTAGCACCATACAGATAACTACTCTGTGA---GAGA---TGTAAGGA
AGG-AAAAAGTTCTCCTCGACACTTTTAGGGTCC-TGGCT--GGGTCTGAAAATGAAACTGAC-CAAGACAGATTAACAG
GAGAAAA-GCACACAGA-TTTATTGACTCTTTACATGAACATAGGGGTCTTTATGTGGGAACATGGGATAAAGACCCA--
-AAGTGGCCAAAGCAGGAAGCTTTCATACCTTTTAGACAAAGAAAT----AATAAATC--AGAATAATTGACCAGAC---
---AAAGGAGTTTGGG---CTAGTGGTAGCCCAACTAAAACTAATTAGTCCTAAACCTCTTTAACTAAGACATGAACTTC
CTTATCTAGGACAAGAACAAGGAAGATAAGGGTTAGTTTAAGTAGGTGTGTT--TG--------TCT--------ATTGC
C-TTCTCTGGTCCTGTAAGAGCATGTCTCCAAT-------------------------AAAAGGAGAATTCATTTCCTGA
CTGTAGGCAGAAAAGG--------GAGAACTTTTTCTGTGTTTACTACTGCTCAATTGCCTTCAGCTCAACATATT-TTT
TATAACAAAGAGGCACATTTTAGGGTGGCACATTCTGGTTTCCTTCA---GGAA---CTATCTCCCTCTCACAGAATGTG
AACAGCATCACTGTTGTAGTCTTCACATCTGA
>Manis_pentadactyla
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNN---NNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCCCTTTGGCTCA-TGGCT--GGGTCTGAAAATTAAACTGAT-AAAGACAGATTAACAG
GAGAAAA-GCACACAAATTATAATGACTTTTTACACAGAGGTGGGAGTCTTTGTA----------AGAGAATGATCTGAA
AAAATGGTCAGAGCAGGAAGCTTTCATACCGTTTTGACAAAGAAGC----AATACATTTTTGAATAATTGATAAGAC---
-----AAAGTTCTGGG---CTAGGGCTAGTCCCTCTGGAAATAAGTAGTCCTTATCTGCCTTAACTA-------------
--------------------GGAATATAAGGGTGAGTTTAACAAGATTGGTC--CTCAGAGTCTTCT--------AGCAC
C-TTCTCTGGGCTGATGAGAATCTGTCTCCAAT-------------------------GAAAG---AGTTTAATTCCTGC
CTTTAGGCAAAA-----------------------------------------AATTGCCTTCAGCTGTAAATAAT-TTT
TATGTCAAGGAGGCATATTCTG---------------GTTTCCTTCA---GAGA---CTATTTCATTCTCCCAGAATGTA
AGCATCAGCATTAGTGTCTTCTTCATGCCTGA
>Equus_caballus
GATTTCTAGTCTGGGCCAGGGCT-----GTCACCCAGCACCATGCTGATAATTATCCTGTGA---GGGA---TGTAGGGG
AGG-AAAAAGTTTTCCTTGACCCTCTTAGGGTCC-TGGTT--GGGTCTGAAAATTAAACTGAC-AAAGACAGATTAACAG
GAGAAAA-GCACACAAATTTGATAGAATTTTTACATATACATGGGAGCCTTCACA--------AGAAATGAAGACCTGAA
GAAGTGGGCAGAGCAGGAAGTTTTCATACCTTTTAGACACACACACACAAAATA------TGAAGGATTGACAAGAC---
----AGAGGGTTTGGG---CTAGGGGCAG------------TAAACGTTGAAGAA-----GTAACTA-------------
--------------------GGAAGATTAGGGTGAGTTTAACAAGGTTTATT--TTCAGATTTCTCC--------AGTGG
C-TTCTCTGGGCTGATGAGAGTCTGTCTCCAAT-------------------------AAAAGGAGAATTTATTTCCTGC
CTGTGGGCGGAAAAGG--------GGGAGTTTTGTCCGTGCCTACTGCTTCTTAATTGCCTTTAGCTGAAAATAATCTTT
TATATCAAAGAGGCATATTTTGGTGTGACATATTCTGGCTTCCATCA---GGGA---CAGTTTCACTCTCACAGAATGTG
AGCATCGTCATCAGTGTCTTCTTCACATCTGA
>Ceratotherium_simum
GATTTCTAA-CTAGGCGAGGGCC-----GTCCCCAAGAACCATACTGGTAAGTATCCTGTGA---GGGA---TGTAGGGG
AGGAAAAAAATTTTCCTTGACCCTCTTAGGGTCT-TGGCT--GGGTGTGAAAATTAAACTGAC-AAAGACAGATTAACAG
GAGAGAA-GCACACAAATTTGATAGAATGTTTACACGTATATGGGAGCCTTCACA-------AGAGAATGAAGACATGAA
GAAGTGGCCAGAGCAGGAAGTTTTCATACCTTTTAGACAAAAAATCCCCCAACATATTTGTGAAGAACTGACAAGAC---
---AGAAAGATTTGGG---CTAGTGATAG------------TAAATGGTGAAGAA-----GTAACTA-------------
--------------------AAAAGATTAGGGTTAGTTTAACAAGGTTTATT--TGCAGATTCCTCT--------AGTTC
C-TACTCTGGGCTGATAAGAGTCTGTCTCCAAT-------------------------AAAAGGAGAATTTATTTCCTGC
CTTTAGGCAGAAGAAG--------AGGAGTTTTTTCTGGGCTTACTGCTTCTTAATTGCCTTCAGCTCGAAATAAT-TTT
TATATCAATGTGTCATATTTTGGGGTGACATATTCTGGTTTCCTTCA---GGGA---CCATTTCACTCTCACAGAATGTG
AGCATTGTCATCAGCGTCTTCTTCACATCTGA
>Sus_scrofa
GACTTCTTGTCTAAATAAAGGCT-----GCGCCTTAGCACTCCACTGACAGCT-TCACGTGA------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------GGGG---CCATTTCACTCTTACAGAGGGTG
AGCACTGCCGT--GGGGTTTCTTCCCATACGA
>Bos_taurus
GATTTCTCGTCTAAGCCAAGGCC-----ACCCTTTAGCACCACACTGACACCTATCACGTGA------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------GGGA---CCATTTCACTCTCGCAGAAGGTG
AGCATCATCA---GTGT-TTCTTCACATCTGA
>Myotis_myotis
GCTTTCTCATCTAAGCGAGGGCCCCTCCAGCACCCAGCCCCACAATGATAAGTATTATGTGA------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------GGGA---CCATTTTGCTTTCAAC-------
----TTCTCATCATTGTCATCTTCACATCTGA
>Rousettus_aegyptiacus
AACTTCTTTTCTAAGTGAGGGCCCCTCAACCCCCCAGGCCCACCACCATAACT--CATGTGA------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------GGAC---CTATTTCACTCTCACGGAATGTA
AGCATTGTCATTAGTATCTTCTTCACATCTGA
>Condylura_cristata
TATTTCTCTTGAAAACGAGACCT------CTACCCAGCACTACACTGATCGCTTTCCTGTCA------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------AG-A---TT-GTTTGTTCTCACATAGTGTG
AGCATCGGTGTCTGTG--------ACATCTGA
>Uropsilus_gracilis
GGTTTCTCCTCTAAATGAGGGCC-----ACTATTGAACACCACACTGACACCTACCATGTGA------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------GGGA---CATGCT-------------TGTG
ACCATCGGTACTGGCATCTTTGTGTCATCTAA
>Homo_sapiens
GATTTCTAATCTAGGCAAGGGCC------GTGCCAAGCACCACACTGACAGCTATCATTTGA------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------GGCA---ATATTTCACTCTTATAG--TGTG
GTCACCGTC-CCAGTGTGTTTTTCACATCTAA



Dog11_LTR

>MER34C_CF
----------------------------------------------------------------------TGTTGAGG-A
GAAAAAAATTTTCCTC----TACCCTTCTAGGTTCTTCTGGCTGGTCTAAGAATCAAATTGACATAAGACAGATTAACAG
GAGAAAA-ACAAACAAAAGTTTAATAACATATGTATACCTCCTGTATACATGGGAGAGACCCAGGAAAACTGAGTAACTC
CCCGAAATGGCCCAAGCCATCAC-CTTAAATACCATCTCCAGCTAAAGACAAAA-AAGATGTTGGGGGTGGGG--AGTCA
GTTATGGGAGGTTACCAGGAAAA-GCACAGTAAACAAGGGTAAGGTTGTTATGCAGATTTAAGTCCTTGCCTTCTCCATT
GATAAGAGTTTCTAGAGATTTAGAGTCATCCTCCTCTTCCTGGTACAGAGAGGG-----AGACACCCTTACAAATGGAGA
TTTCCCTTATAAATGTAAATGTCT--CTTACAAAAGGGTAACTTCTACTCGGTTTTCAGAGCTTCTCCTGTGTCTGCAGT
TTCTTAAAAATAATCAGCCTAAAATAATCCTTATGCCAAAGAGGCATATTTTGGGGTGGCAAATTCTGCTCCCCTTCA--
-----------------------------------------------------------------
>Canis_familiaris
CAGCTGAAGTGGAT----------GGAAGGAGATTCAAAACCAAAGCATCTGTCTTAGGC---CTGT---TGTGGGGT-A
G-AAAAAATTATTTTCCTTCTCCTCTTCTAGGCTCTT--GACTGA-ACATGCTTGTAATT--CA---GAGAGATTAACAG
GAGAAAA---AGGAATAAGTTTAATAACATGTGTA--CCCCCTGTATACATGGGAGATACCTGGGAAAACTGAGTAACTC
CCCCAAATGGCCCAAGCCATCGCTTTTAAGTATCATCTCTAGCTAAATAA--AG-TGGATGTTAGAGGTTGGG-TAGCCA
GTTTTGAGAGGTTACCAGGAAAACATATAGTAAATA-AGGTAACGTTGCTATGCAAATTTAGAC-----CCTTCTCTGCC
CATA--AATTTCTAGA----CA--GTCACTCTCCTCTTCCTGTTACAGAGAGGA-----------------------TGA
TTTCTCTTAAAACTGTAAATGTCC--CTTACAAAGAGGTAACTTCTGCACGGTTTTCAGAGCTTCTCCTGTGTCTGCTGT
TTCTTAAAAATAATTA--------------TTATGCCAAAGAGGCATATTTTGGTATGGCAAAATGTGCTCCTCATCA--
-GCGG---ACA------TGTATAATGCACTATTGCAATGGATACATTACAGAATGCTATCAATAA
>Felis_catus
CAGCTAGTATGGAT----------GGAAGGAGATTCAAAACCAAATAATCTGCCTCATGC---ATGG---CATGGGGTCA
G--AAAAATGACTTGCCCTTTCCTCTTCTAGGTTCTT--GGCTGAGACATGCCTGTAATT--CA---GACAGATTACCAG
GAGAAAA-GTAAACATGTGTTTAATAACATGTGTA--CCTTCTGTGTACATGAAAGATACCCAAGAAAACTGAGTAACTC
CCCCAAATGGCCAAAGCCATCAC-TTTAAATATCATCTCTAGCTAAAGACAAAG---GATGGTGGGGGTGGGG-TAGCCA
GTTGTGAGAGGTTACCAAGAAAATATACAGTAAACACGGGTAACGTTGTTATGCAGATTTAGATTTTTGCCTTCTCTATT
GATA--AATTTCTAGAGATTTA--GTCACTCTTCTCTTCCTGTTACAGAGGGTG-------------------------A
TTTCTCTTACAATTGAAAATATCC--CTTACAAAGAGGTAACTTCTACTTTGTTTTCAAAGCTTCTTCTG------CTGT
TTCTTAAAACGAATTA--------------TTGTGCCAGAGAGGCATATTTTGGTGTGACAAAATGTGATCCCCTTAA--
-GTAG---GCA------TATTTAATGCATTATTGCAATGGGCACATTATAGAATACTATCAATAT
>Manis_pentadactyla
CAGTTAAAGCAGAC----------TGGAGAAGATTCAAAACCAAAGCATCTGCCTCCTGC---CTGG---TGTGGAGG-A
G-GAAAAATAATTTTCCTTCTACTTTTGTAGGTTCTT--GGCTAAGATACTCTT-TAAT---GAAAAGGCAGATTAACAA
GAGAAAGATTAAACAAAAGTTTGGTAATATGT-----TATCTCCCATATCGCAAAGATACCTAAGAAAACTGAGTAACTC
TCCAAAATGTCCCAAGACACAAC-CTTAAATTCCGTCTTCAGCTAAAGACAAAAGAAGATGTTGGGGGTAGGG--AGACA
GTTGTGGGAGGTGTCCAGGAAAA-ACATAGTAACTAAGGGTAAGATTGTTGTGTAGGTCAAGAT------CTTCTCCAGT
GATGAGAATTTCTAGAGATTTA--GTCATTCTCCTCTTCCTGGTGAAGGGGAGGGCGACAGACACCCTTACAAATGGAGA
TCTCCCTTGTAAATGTAAAGGTTC--CTTATAAAGGAG-AACTCCTACTCAGTTTTTAGAGCTTCTCCTGTGCCTGCTGT
TTATTATGAACAATCAGCCTAAAA------TAATGACAAAGAGGCATATTTTGGGGTGACAAATTCTGCTTCCCTTCA--
-GCAG---GCA------TATA-CATGAGCTAGTGCAACAAATACCTTACAAAATACTAGCAATAA
>Myotis_myotis
GAGCTAAAGCAACT------ACATGGGAGGAGATC------------------CTCATAT---GTGG---TGTTGGGG-A
G-GAAAAATAATTTTGCCTATACCCTTCTAGGTTCTT--GGCTGAGACATCCT-GTAACA--AAAAAGGCAGACAAACAG
AAGAAAA--TAAACTGGTGTTTACTAGC--ATTTATACCTCCTGTATACATGGAAGATATTCAGGAAAACTGAGTAACTC
TCTGAACTAGCCCAAGCCATCAC-CTGAAATACCATCACCAGCTAAAGACAAAACAAGCTGGTGGGGGTGGAAGAAAGCA
ATTATGGGTG-------GGAAAG-TCCCAGTAAAGAAAGGTGAGATTGTTATGCTGATTTAGGT-CTTGCTTTCTCCACT
GATAAA----TTTAAAGATTTA--GTCATTTTCCT-------TGATAGAGAGTCACACACACAAATCAGACAAATGGATA
TTCCCCTTATACATGTAAATGTCCAGTTTTAAAAAGTGTAATATCTACTCTGTTTTTAGAGCCTCTT-TATATCTGCTGC
TTCTTAAAAATAATAA------------------GCCTAAAATAGCTATATTTAAGTGACAAATTCTGCTCCCCTTCT--
-GTGG---GCA------TATTTAATATGCTATTACAATGAATACATCTCAAAATACTATCAATAA
>Rousettus_aegyptiacus
CAGTTAAAGCAAAT----------GAGAAAAATTCTAAAACCAAACCATCTGACTCATGT---CA-----TGTGGGAG-A
G-TAAAAATTTTTTTTTCTCTACCCTTCTAGGCTCTT--AGCTGAGACACCCTTGTAAT---GAAAAGATAAATTAACAG
AAAAAA----ATATAGAAGTTTAATAACCTGTATA---CCTCTGTACACATGGAAGATTCCCAGGAAAACAGAAAAACTC
CCTAAAATGGTCCAAGCTATCAC-TTAAAATAGCATTTCCAGC-AAAAACAAAAGAAGATGTTGGCAGTGGGAGTAGCCA
GTTACAGGAGGCTGTTGGAAAAA-GGATAGTAAAGAAAAGTTAGGTTGCTAGGCAGACATAGAT-CTTGGCTTCTCCATT
GATA--GATTTCTGGAGAGTTA--GTCATTTTCCT-----TGATACAGAGAGGG-----ACACACACTTACAAG-AAAGA
TTTTCATTATACATGTGATTGTTT--CTTACAACAGTGTAATGTCTACTCTGTTTTTAAAGTTTCTCCTGTGACTGTTGT
TTCTTAAAAATAGTCTAAAATAATTT----TTATGACCAAAAGGTATATTTTGGGGTGACAAGTTTT-CTTCCCTTCA--
-GTGA---ACA------TATTTAATGT-TTATTGCAATAAATACATTACCAAATA----CAATAA
>Sus_scrofa
CCACTCAAGTAGAT----------GGGAGGAGATCTCAAACCAAAGTATCTAAATCGTGT---GTGG-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------GCA-----TTATTTAATGTGCTGCTACAATGAAAACATGATAAAATACTATCAGTAA
>Bos_taurus
CAGCTCAAACAAAT----------GGGATGAAATATGAAAA-AAAAAATCTACCT--TGT---GTGA-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------GCA------TATT-AATGTGCTATTGGAATGAATACA-GACAAAATATTGTCAATAA
>Equus_caballus
CAGCTAAAGCAGGCGGGGGGGGGGGGGGGGGGATCCAGGAGCA-AGCATCTGTCTCCTGC---GTGG-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------GCA------TATTTAATGTGCTACTGCAATGAACACATTACAAAATACTATCAATAA
>Ceratotherium_simum
CAGTTAGAGCAGAT----------GGGAGGAGATTCAGAACCAAAGCATCTGTCTCCTGC---TTGG-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------GCA------TACTAAATGTGCTATCGCAATGAATACATTACAAAATACTATCAATAA
>Condylura_cristata
CAGCTAAGTCATAT-------------AGCTGTTCAAAGCCAAAAGCATCTGCCTCAAGC---ATGG-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------GGA------TATTA--------ATTGTAATCGACACATTACAAAATACTACTGA-AA
>Sorex_araneus
TAG-TGAAGCAAAT----------GGGAAGTGGTCCAATAACAGAGCAGAAGCATCTGAC---TTGT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------GCACAGACATATTTAGTGTGGTATTGTAATGGATAC-TTACAAAATACTATCTATAA
>Cavia_porcellus
CAGTCAAGGCAGGT----------GGGAAGCAATCTTAAAACAAAACACTGGTGTTCTGC---TTGG-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------GCA------TAGTTCATGTGCAATTACAATGTATACATTACAAAATAGGGCCAAAAA



Dog12_LTR

>MER34C_CF
--------------------------------------------------------------------TGTTGAGGAGA-
--AAAAAATTTTCCTCTACCCTTCTAGGTTCTTCTGGCTGG--------TCTAAGAATCAAATTGACATAAGACAGATTA
ACAGGAGAAAAACAAACAAAA--------GTTTAATAACATATGTATACCTCCTGTATACATGGGAGAGACCCAGGAAAA
CTGAGTAACTCCCCGAAATGGCCCAAGCCATCACCTTAAATACCATCTCCAGCTAAAGACAAAA-AA-GATGTTGGGGGT
GGGG----AGTCAGTTATGGGAGGTTACCAGGAAAAGCACAGTAAACAAGGGTAAGGTTGTT-ATGCAGATTTAAGTCCT
TGCCTTCTCCATTGATAAGAGTTTCTAGAGATTTAGAGTCATCCTCCTCTTCCTGGTACAGAGAGGGAGACACCCTTACA
AATGGAGAT------TTCCCTTATAAATGTAAATGTCTCTTACAAAAGGGTAACTTCTACTCGGTTTTCAGAGCTTCTCC
TGTGTCTGCAGTTTCTTAAAAATAATCAGCCTAAAATAATCCTTATGCCAAAGAGGCATATTTTGGGGTGG-CAAATTCT
GCTCCC----CTTCA-----------------------------------------------------------------
----------------------------
>Canis_familiaris
AGAAATAATTTCTTTATCTTGCTGATTGCTAACTTCTCAGTGCCTTTAGTGTGCTAAC---ATGC---TGTTGGAGAGAT
AACATAATTTTCCCTCTACCCTTCTAGGTTCT--TCGCTGAGATACATCTGTAATAATAATA-------AAAAAAGATTA
ATAGGAG----ACAAACAGAA--------GTTTAATAGC--ATGTGTACCACCTGTAT--ATGAGAGATGGTTAGGAAAA
CCGAATAACTGCCCAAAACATTCCAAGCTGTCAGCTTAAATAACATCTTCAGCTAAAAACAAAAGAA-AATATTGGAGGT
GAGG----AGTCAGTTATGA-AGGTTAGTAGGAAAAGCACAGTAAATAAAGGCAAGGTTGTT-GTGCAGATTTAGGTCAT
TGCCCTCTCCACCAGTAAGAGTTT-TAGAAATTTAGAGTCATTTTTCTCTTCCTGCTACAGAGAAGGAGACAGTCTAACA
GATGGAGATTGTACATTTCCCTATACATGTAAATGTCTCTTACAAAAGGGTAACTTCT---CAGTTTTTAGATCATTTCC
TATGCCAGATGTTTCTTTAA---AATCAGCCTAAAATAATGCTTATGCCAAAGAGACATAGCTTGGG-TGGTTATACCCT
GCTCCC----CTTCA---GTGC-----CTAGCTCTTTTGGAGAAGCTATGGAA---------------------------
-TATATA-----TGCACAGACTTCCTAC
>Felis_catus
AGAAATAATTTCTTTATTTTGCTGATTGCTAAATTCTCAGTACCTTTA-TGTGCTAAT---GTGC---TGTTGGGAAGAT
AAAATAATTTTCCCTCTACCCTTCTATGTTCT--TGCCTGGGATGCACCTGTAATAATAAAAAT-----AATAAAGATTA
GTAGGAGAAAAATAAACAGAA--------TTTTAATAAC--ATATATACCACCTATAT--ATGGGACATGCCTAGGAAAC
CTGAATAACT-CTCAAAAGATTTCAAGCTGCCATCTTAAATTACATCTCCAGCTAAAGACAAAAGAA-GATACTGCAGGT
GAGG----AGTCAGTTATGAGAGGTTACCAGGAAAAGCACAGTAAACAAAGGTATGGTTGTC-AGGCAAATTTAAGTCAT
TGCCTTCTCTACTGATAAGAATGT-TAGAAATTTAGAGTC---TTTCTCTTCCTGGTACAGAGAAGGAGACACCCTAACA
GATGGAGATTGTACATTTCCTCATACATGTAAATGTCTCTTACAAAAGGATAACTTGT---CAGTTTTTAGAGCTTTTCC
TGTGTCAGCTGTTTCTTTTAAA-AATCAGCTCAAAATA------ATGCCAAAGAGGCATAGTTTGGGGTGGTTGTATTCT
GCTCCC----CTTCA---GTGC---CAATAGACCTCCTGGAAAAGCTATGCAA---------------------------
-TATATG-----TGCACAGATTTCCTAC
>Myotis_myotis
AGAAATGATTTCTTCATTTTGCTGATTGTCAAATTCGCAGTGCTTTTAGTATGCTAAT---GTGC---TGCTGAGGAGAA
TAAATAAGTTTTGCTTTATCCTTCTAGATTCT--TCGCTGAGACTGCACTGTAATAAA-----------AAGACAGATTA
ACAGGAAAAAAAAAAACAAAACACCAGATGTTTAATAAC--ATTTATAACTCCTGCATACATGGGAGATGTCCAGAAAAA
C----TAACTCTTTGAAATGTCTTAAGTCACCACATTAAATAATA----------------------------------T
GAGA----AGGCCAATTTGGGCGATGACTGGGAA---------AAACAAGGGTAAGGTTGTTAATGAGGATTTTAGTCAT
TGACTTCTCCATTCATA--TATTTCTAGAGATTTAGAATTATCTTTCTTTTCCTAGTCTAGACAGGGAGACACCCTTACA
CATGGAGATT-------------------------TCTCTTATAAAAGGGTAACTTCTGCTCTGTTTGCAGAACTTTCCC
AAT----GCTCTTTCTTAAAAATAATCAGCCTAAAATAA-CCTTATGCCAGAGGGGCCTATTATGGGGTGG-TATATGGT
GTCCCCCCCACCTCA---GTTC---CTATTGATCTTCCAGACAAAATACAGTT---------------------------
-TATTTA------CCACAGATTTCCTAC
>Rousettus_aegyptiacus
AGAAATAATTT----ATTTTGCTGATTGCTAAATGTACAGTGCTTTTAGTGAGTTAAT---GTGC---TGTTGAGGAGAA
AAAATAATTTTT-TTCTACACTTATAGGTTCT--TGGTTAAGACTCTCCTGTAATA-------------AAAAGACATTA
ACAGGAGAAAAACAAAAAGAT--------ATTTAATAAC--ATGTACATCTCCTGTATATAT-AGAGATACCCAGAAAAA
CTGAGTAACTCCCTGAAATGTCTTAAGACACTGTCTTAAATAATATCTTTAGCAAAAGACAAAAAAATGATGTTAGGGGT
GGAGGGAAGGCCAGTGATGAGAAGTTGGCAGGAAAAGCACAGTAAACAAGAGTAAGATTATAAATGAGGATTTAAACCAT
TTCCTTTCCCACTGATAAGAGTTTCTAGAGATTTAGAGTCATTCTCTTCTTCCTGCTACAGAGAAGAAGGCACTCTTACA
CATGAAGAT------TACTCTTATA-GTATAAATATCTTCTATAAAAGAGTAACTTCTACACAGTTTTCAGAGCTTTCCC
TACATCTGCTGTTTCTTAAAAATAATTAGCCTAAAATAATCCTTATGCCAAAGAGGCATATTTTGGGTTCA-TATATTCT
TTTTCC----CTTCA---GTTC---TTA---------CAGACAAACTATGGTATATAT----------------------
-TATATA-----TGCATGAATTTCCTAC
>Sus_scrofa
AG-AATAATTTCTTTATTTTGATGATTGCTAACTTCTCAGTGTATTTAACATTCTAAT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------ATGC---CTGTAGATATTCCAGAGAAACTGTA------------------------------
-CATAGAGTTCTTACACAGATTTCCTAC
>Tursiops_truncatus
AGAAATAATTTCTTTATTTTGCTGGTTGCCAGAACCTCAGTGCCTTTAGTGTGTTAAT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------GTAC---TTATAGATATTCCAGAGAAACTATGATATATATATATATATATATATATATATAT
ATATATA-----TATGCAGGTTTCCTAC
>Equus_caballus
AGAAAGAATTCCTTTATTTTGCTAGTTGTCAAATTCTCAGTGTCATTAGTGTGTTTTT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------GTGC---CTATGGATCTTCCAGAGAAACTATAGTA---------------------------
-TATACA-----CGCACAGATTTCTTAC
>Ceratotherium_simum
AGAAAGAATTTCTTTATTTTGCTGGTTGCCAAATTCTCAGTGCCATTAGTATGCTAAC----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------GTGC---CCATGGATCTTCCAGAGAAACTATGGTA---------------------------
-TATATA-----TGCACAAAT-TCCTAC
>Condylura_cristata
AAAAATG-----TGTGTTTTTC---TTGTCAAATTCTCAGTGCCTTTAGTGTGATGAT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------GCAC---TTATAAATCTTTTAGAGAAA-----------------------------------
-CACATG-----CACAGAGATACTGTAC
>Uropsilus_gracilis
NNNNNNNNNNNNTCTATTTCAC---TTGTCAAATTCTCAGTGCCTTTAGTGTGATAAT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------GCAC---TTATAAATCTTTTAGAGAAACT---------------------------------
-CATGCA-----CAAAGAGATACTATAC
>Homo_sapiens
AAAAATAATTTCTTTATTTTGCTGGTTGCTAAATTCTCAGTGTC-TTATTGTACTGAT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------GTGC---TTGCAGATGTTCCAGAGAAGCTGTGGTA---------------------------
-TA---------TGCACAGATTTCCTAC



Dog13_LTR

>ERV54-EC_LTR
--------------------------------------------------------------------------------
-------------TGTTAAAAACAA----GACAACAGGCCCAAAATGGAGTCACTTATGCTAAGCCCCACGTCACCAAAC
CGAGACTTAACTTAATTACAGTTTCGGCTCTCC-CAGAAATGGAATCTTAAACCAGTCAATCAGGAATCACCTGATCAGC
ACTAGTTAGGTAATCTGCCTGATAGACCCC-TGCCATCCCCTAAAGGAAAGTAACCTTGCAATAACCAATCCACTTTTTT
GCCTAGTATAACTTCCTTGTTC-----CTGCTCCCTTCTGCCTATAAAAGTCTTTCATTTT-------------------
--------GTACAGCTCCTCGGAGCTCCTTTCTATCTGCTAGATTGGATGCTGCCCAATTC--ATGAA----TCATTGAA
TAAAGCCAATAAGATCTTTAAAATTTACTCAGTTGAATTTTGTTTTTTAACA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------
>Canis_familiaris
AAGATCAG-TT-TTGGCCAGGAATG------TTTACCTAAAAATTTGCAGTTTAGCTCAATAACATGGATGGTGCTTTGG
CAT---CTAT---TGTTGAACACAG----GGCAACAGGCCCAAAATGGAGTCACTTATGCTAAACCCAGGGTCACCAAAC
CGAGACTTAGCTTAATTACAGTTTTAGTTTTCC-CAGAAAAGGAATCATAAACCAGTCAATTAAGAATCAGTTGATCAAC
ACTAGTTAGGCCATCTGCCTAAAGGTCATC-TGCCATCCCCTAAAGGAAAGTAACCTTGCAATAACCAACCCGCTTTTTT
ACCTAGTATAACTTCGTTGTTCGCATTCTTTTCTTTTCTGCCCTTAAAAGTCTTTCATTTT-------------------
--------GTACAATTCCTCAGAGCTCCTTTCTTCCTGCTAGATTGAATGCTGCCCCATTCGAATTGA-TTTTTGCTCAA
GTAAACTCATAAAATTTTTAATATGC-CTCAG-----TTT-ATCTTTTAACA---TGAT---GGAAGTGGAGCCTTTCC-
--------------------------------------------------------------------------------
------------------------------------------------------------------------------GT
TAAAATC-------------------------------------------------------------------------
------------------------------------------------AAGGTATATGTTGCTCTCAACTG
>Felis_catus
AAGATCAG-TT-TTGGCCAGGAGTG------TTTACCTAGAAATTTGCAGTTTGGCTCAAAAATACGGACAGTG-TTTGG
CAT---CTGT---TGTTGAAAACCG----GACAACAGGCCCAAAATGAAGTCACTCATGCTAAGCCCAGCATCACCAAAC
CGAGACTTAACTTAATTACAGTTTCAGCCGAAAGCTGAAATGGATTCGTAAACCAGTCAATCAGGAATCGGTTGATCAAC
ACTAGTTAGGTCATCTGCCTGATAGACCCCTTGTCATTCCTTAAAGGAAAGTAACCTTGTGATAACCAACTCTCTCTTTC
ACTAAGTATAACTCTGCTGTTC-----CCATTCTTTTCTACCTATAAATGTCTTTCTCTTTTTTTTTAATTTTTTTTTTA
CGTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNN---NNNNNNNNNNNNNNNNN-
--------------------------------------------------------------------------------
------------------------------------------------------------------------------NN
NNNNNNN-------------------------------------------------------------------------
------------------------------------------------NNNNNNNNNNNNNNNNNNNNNNN
>Manis_pentadactyla
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNCAGTTTGGCTTAAGAGTATGGCTAGTGCTTTGG
GAA---CTAT------TAAAAACAA----AACAGCAGGCCCAAAATGGAGGTACTTATGCTAAGCCCTGGGTCACCAAAC
TGAGACTTAACTTA--TTAAGTTTTGGTGCTCC-CAGAAATGGAATCTTAACTCAGTCA----GGAATCACCC-ACCAGT
ACTAGTCAGGTAACCTGCCTGTTAGATCCT-TACTATCCCCTAAAGGAAAGTGACTTTGCAATATTCAACCTGTATTTTA
CCTTAGTACCTCTTCCTGCGTC-----CTGCTCCTTT-TGTCTATACAAGTCTTTTATTTT-------------------
--------GTACAGCTTCTTGGAGCTCCTTTCTATCTGCTACATTGGATACTGCCTGATTCAAATAAATTTTTTGATCAA
ATAAACTCGTAAAATTTTTAATAT-------------TTT-ATCTTTGAACA---CTAT---GGAAGTGGAGTTTTGCC-
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AG
TAAAATC-------------------------------------------------------------------------
------------------------------------------------AAGGTATATCTTTCTCTCAACTG
>Sus_scrofa
AAGCTCAA-TT-TTGACCAGGACTA------TTGACTGAGAAATTTGCAGTTTAGCCCAATAACATGGACAGTGCTTTGG
AAT---CTAC---TGTTAAAAAGAA----GACAACAGGCTGAAAATGGAGTGACTTATGCTAAGCCCTACATCACCAAAT
TGAGATTTAACTTAATTATAGATTCTGCTCTCC-CAGAAATGGAACCTTAAATCACTCAGTCAGGAATCTCCTGGTCAGC
ACTAGCTAGATAATCTGCCTGAGAGACCTC-TGCCATCCCCTAACAGAACAAAAC--CATAATAAGCAGCCCACTTTTTT
GCCTAAGATAACATCCTTGTTC-----C---TCCCTTCTGCCTATAAAAGTCTT--GTTTT-------------------
--------GTATAGCTCCTTGAAGCTCTTTTCTATCTACTAGACTGGATGCTGCCCAA-TTGAATCAA-TTGTTGCTCAA
----ACTTGTAAAATTTTTTAAATGC-CTTGG-----TCT-ATCTTTTAATA---CCAC---AGAAGTAGAATATTATC-
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AG
TACAATC-------------------------------------------------------------------------
------------------------------------------------AAGGTATATTTTGCTCCCAACTG
>Bos_taurus
AAGATCAA-TTTTTGACCAAGACTAGAACTATTTACCTAGCAATGTGCAGTTTAGCTCAATAACATGGATAGTGCTTC--
TAT---CTGT---ATAGTAAATGGATAGTGAATCTAGGCCCCAAATGGAGTCACTTATGCTAAGCCCTGTATCATCAAAC
TGAGATTTAACTTAATTACAGTTTCTGCTTTCC-TAGAAATGGAATCTTAAATCAGTCAATCAGGAATCACCTGATCAGC
ACTAGTTAGGTCATCCGTCTGATAAACCCC-TGTGATCCCCTAAAGGAAAGAAAC--CACAATAGCCAACCCACTTTTTT
ACCTAGTATAATTTTCTCATTT-----CTGCTCCTTTCTGCCTATAAAAATCTTTCATTTT-------------------
--------GTACAGCTCTCTAGAGCTCCTTTCTGTCTGCTAGATTGCATACTGTCCAATTCAAATCAG-TTGTTTCTCCA
----ACTTGTAAAAACTTTAACATGC-CTCAG-----TTT-ATCTTTTAACA---CTGT---GGAAGTTGAGT-TTGCC-
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AG
TATAGTC-------------------------------------------------------------------------
------------------------------------------------AAGGTATATTTTGCTCTCAAATG
>Equus_caballus
AAGACCAA-TTTTCAAGCAGAAGTA------TTTACCTAGAACTTTGCAGTTTGGCTCAATAATATAATCAGTGCTTTGG
AAT---CTAT---TGTCAAAAACAA----GAGAACAGGTGCAAAATGGAGTCGCTGATGCTAAGCCCCACACCACCAAAC
CAAGACTTAACTTAGTTACACTTTTGAC--TCC-CAGAAATGAAATCTTAAATCAGCCAATCTGGAATCATCTAATCAGG
ACTGGTGAGGTCATCCGCCTGATAGAACCC-TGCTCTCCCCTAAAGGAAACTGACCTTGCAATAACCAACCGGCTTTTTC
TTCTAGTATAACTTCA----TC-----CCACCCCCTTCTGCCTATAAAAGTCTTTCAGTTT-------------------
--------GTACGGCTCCTCGGAGCTCTTTTCTATCTGCTAGATTCGCTGCTGCCTGATCTGAATTGA-TTTTTGCTCAA
ATAAACTCTTAAAATTTTTAATAAGC-CCCAG-----TTT-ATCTTTTAACA---TTAT---GGAAATGGAGTTTTGCC-
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AG
TAAAATC-------------------------------------------------------------------------
------------------------------------------------AAGGTATATTGTGCTCTCAAATG
>Ceratotherium_simum
AAGATCAG-TTTTTGACCAGGAGTA------TTTACCTAGAACTTTGCAGTTTGGCTCAATAATATGGACAGTGCTTTGG
AAC---CTGT---TTTTAAAAACAA----AACTACAGGTGTAAAATGGAGTTGCTTATGCTAAGCCCCGAATCACCAGAT
CAAGACTTAACGTAATTAGCGTTTT--CACTCC-CAGAAACACAATCTTAAATCAGTCAATTGGGAATCACCTGATCAAC
CC--GTTAGATAATCTGCCTGATGGACCCC-TGCCATCCCCTAAAGGAAAGTGAC--TGTAATAATCAAGCAGCTTTTTT
GTCTAGTGTAACTTCCTTG-TC-----CAGCTCGCTTCTGCCTGTAAAAGTCTTTCACTTT-------------------
--------GTATAGCTCCTCAGAGCTCTGTTCTGTCTGCTAGATTGGATGCTGCCTGATTTGAATTGA-TTTTCCCTCAA
ATAAACTC--AAAATTTTTAATACGC-CCCAG-----TTT-ATCTTTTAACA---CTCT---GGAGGTGGAGTTTTGCC-
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AG
TAAAATC-------------------------------------------------------------------------
------------------------------------------------AAGGTATATTTTGCTCTCAACTG
>Myotis_myotis
AAAGTCAATTTTTTGACCCAGAGTA------TTTACCTAGAAATTTACAGTTTGGCTCACTCATATGGATAGTGCTCTGC
AAC---ATAT----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------AGAGGTGGTGTTTTGCC-
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AG
TAGAATC-------------------------------------------------------------------------
------------------------------------------------AGGGTATATTTTGCTCTGAACTG
>Rousettus_aegyptiacus
AAGGTCAA-TT----------------------------------TGCAGTTTGGCTCAAGCATATAGACAGCGATTTGC
AAC---CTAT----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------AGAGGCGGCATTTTGCC-
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AG
TAAAATC-------------------------------------------------------------------------
------------------------------------------------AAGGTATATTTTGCTCACAACTG
>Condylura_cristata
ATGGTTATTTT--------GAGAGA------TTTACCCAGAAATTTGC--TGTGACTCAATAATCTGAACAGTATTTTGG
AAT---CTCT----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------GAAGATAGAA--TTGTC-
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AG
TAAA----------------------------------------------------------------------------
---------------------------------------------------------------CTCAACAG
>Sorex_araneus
NNNNNNNNNNNNNNNNNNNNNNNNA------TTTACCCAGAAATTAAAAG-TTAACTCAATAATATGAACAATGCTTTGA
AGT---CTAT----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------GGAAATGGGATTTTGCCA
AATGACATCAAGAAATGTTTTCCTCTCATGCCCTGCCACAGTGGCAGGGTGGGTTGGGGGGGAGATGGGATTGGGGAGGG
TGGGAGGGACACTGGGTTTACGGGTGGTGGAGAATGGGCACTGGTGAAGGGATGGGTTCCCGAACTTTGTATGAGGGAAG
TATAAGCACAAAAGTGTTATAAATCTGTAACTGTACCCTCACGGTGATTCTCTAATTAAAAATAAATAAATTATAAAAAT
AAAAAATAAAAAAAAATCAACTATCAAAAATTTAAAAAAAAAAAAAAAAAGAAATGTTTTCCTCTCAACTG
>Homo_sapiens
AAGGTCAA-ATTTTGACCAGCAGTA------TTTACCTAGAAACTTGCATTTTGACTCAATAATATGGACAGTGCTTTGG
AAT---CTAT----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------GGAGGTGATGGTTCACC-
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AG
TAAAATC-------------------------------------------------------------------------
------------------------------------------------AAGGTATATTTTGCATCTAACTG



Dog14_LTR

>CARERVR1_LTR
--------------------------------------------------------------TGTTGGGGAAGGTCATCG
AGAAGACGTGACCGCCGGTTGACCC--GTGAGCTGGACCCGGG-CAATCAGAGGCTCCTCACCCCCTCCCCTGTCCTTGG
AATGTGGGTTCCGCTTGCCTTCCCCGCTCCCAGAGGCTGCTCCAAGGACACAGCCTTG----AGATAGTGATGTGGTGTT
GAGAACACCTGNACGGTATACGTGACTGAACCCAGTTAAGGCCTCTATATAAACTTTTAAGATT-TGGCGGGC---GGGT
GCGGAGATCTACTCGTCTTGCTGCCGCCCAAGACAAGCCTCGTATGTAAGTTCCCTTTGCTTATTAAANCTGCCACCT--
--------ACCAACCTGGAGTGGCCTGCCTC-----------------------TTTCTTCGGTCTCTCCCTGCCCTCTG
CGTA-CGGGGGCCGGTTTCAGATTACACCCGGGAAGCTCCCGAGGGGGTTGCGAACCAACA-------------------
------------------------------------------------
>Canis_familiaris
ATATTCCTAGAAGATGTTAAAACAGCAGAAAGCAGGATATCTAGTTTATT---AGCATC---TGTTGGAGAAGGTCAGTG
ACAAGA-----CCACTGGTTTACCT--GTGAGCTGGAGCTGG--CGATCAGAGCCTCCTTA---TCCCACCTGTCCCTGG
AATGGATG-TCTGCCC-CCATTCCT-CCACTAGGAGCTGTTTCAGGTTCACAGTCTT------GAGAGCGAGGTGGTGTT
GAGACCATCTGGACCAAATATGTGACTGAACCCAGTTAAGTCCTCTGTATAAAT--TTAGGATTCTGGG-----------
--AGAGATCCATCAGTCTAGTTGCCGCCCAAAACAAGCCTCATATGTAAGTTCCT-TTGCTTATTAAACCTGCCACCT--
--------ACCAATTTGAAGCAGCTCACTCC------------------------TTTTTCAATCTCTCCTTGCCCTCCA
TGGA-TGGAGGCCAGTTTCAGGTTTTACCTGGAAAGTTCCCGA---TTTTTCGAACCAACA---GCAATC---CTTTGTA
AAACTGCTTCTCCTGAGTAGTTGTTCTGAATTGGGCACTG-GTATGAT
>Felis_catus
ATGTTGCTAGAAGAAGTTAAAACAGCAGAAAGCAGGCTGTCTAGTTCATT---AGCGTC---TTTTGGAGGA-ATCACTG
AGAAGACAGGACTGCTGGTTGACCT--GTGAGCTGGATCTGG--TGATCAAAGGCTTCTCA---CCCCACCCATCCTTGG
AATGTACG-TCTGCCCACCACTCCA-CCACTAGGAGCTATTTCAAAGACAGAGCCTT------GAGAGTAAGGTGTTGTT
GAGACCATCTGAACTGAAAATGTGACTGAACCTAGTGAAGGTATCTATATAAAC--TTAGGATTCTGGCAGGC---CAGT
GCAGAGATCTATTAGTCCTGTGACCACCCACAATAAGCCTCATAGGTTAGTTCCC-TTGCTTGTTAAACCTGCCACCTAC
CAATCTGAACCAATCTGAAGTGGCTTACCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTCTCTCCTTGTCCTTCA
TGTA-TGTGGGCTAGTTTCAGACTTCACCTGGGAAGCTTCCAA---TTTTGTGAACCAAGA---GCAACC---CTTTGCA
AAACTGCCTCTCCTGAGTTG---TTCTGAATTGGGCACTG-TTATGAT
>Manis_pentadactyla
ATA-TCCCAGAAGAAGCTCAAACAGCAGAAACAAGG---TCTAGTTCATT---AGTATC---TGTTGGAGGAGGTCATCA
AGAAGACATGACCACTAGGTGACCTAAGAGAGCTGGCCTCAGG-CAATGGGAAGCTTCTCACCCTCTCCCCTGTCCTTGG
AGCATACATTTTGCCCCCATTTCCCACAGCTGGAGCCATTTTCAAGGATGCAGACCTG----AGAGAGCAACGTGTTGTT
GAACCCATCTGAACAGTATGCGTTCT----CTCAGGTAAGGCTGCTGTACAAAC--TTAAGATTCTGGAGAGT---GGGT
GTGGAGTTCTACTCGCCTTGCAGCTGCCCAAGACAAGTCTCATGGGTAGGTACCC-TTGCTTATTAAAACTGCCACCT--
--------ACCAATTGGGAGTGGCCTGCCTC-----------------------TTTCTTCAGTCTCT-ATTGCCCTCTG
TGTA-TAGGGACCAGTTTCTGATTTCACCCAGGGAGCTTCCAA---GTTCA--------CA---G---TC---CTTTGCA
AAATTGCTTCTCCTACATTG---TTCTGAATTAGGCCCAG--TATGAC
>Sus_scrofa
GTATTTCTTGAAGAAGCTGAAGAAACAGAAAGAAGGTCATCTAGTTCACT---AACATC---TGTCAAAGGAGATCACTG
AGAGGATGTGTCCATTGAATGACCC--TCAAGCTGTACCCAAG-CAGTAGGAGGCCCTTCACTCCCTCCCCAGTCCTTGG
AATGTATGTTCTACCCATCATTTGC-CCACAAGGAACGGTTTCAAGGATGTA-CCTTG----AGAGAGTAAGATGCTATT
GAGACCATCTGAACTGAATACATGCCTGAACCCAGGAAAGG---CTATAAAAACTTTTAAGATTCTGGCAGGC---AGAT
GCAGAGATCAACTTGTCTTACAGCTGACCAAGACAAGCCTTGGATA-----TCCC-TCACTTATTAAAATAGCCAC----
---------------------AGCCTGTTTC-----------------------TTTCTTAGGTCTCTTCCTGCACTCTT
TGTA--CAAGGCCAGTTTCAGATTTCACCTGGAAATCCCTTCA---TTTTGCAAATCAACA---GCATCC---CTTTGCA
AAGTCTCTTCTCTTGAATTGCTGTTCTAAATTGGGCCCTG-GTATGAT
>Tursiops_truncatus
GTATTCTTTGAAGAAGCTAAAGCAACTGAAAGCAGGTCATTTAGTTCATT---AATATC---TGTTGGAGGAGGTCATGG
AGAGGATGTGCCCGCTGGTTAACCC--TCAAGCTGTACTCAGG-CATTGGGAGGCTCCTCACTCCCTCCCGGGTCCCTGG
AATGTACCTTCTGCCCACCATTTGC-CCACTAGGAGCTGTTTCAAGGATG-AATCTTG----AGAGAGTAA-ATGCTGTT
GAGACCATCTGAACTGTATAAGTGTCTGAACCCAGGTAAGGCT------------TTTAAAATTCTGGCGGGC---AGGT
GCAGAGATCTACTGGTCTTGCAACTCACCAAGACAAGCCTGGTGTG-----TCCC-TTGCTTATGAAAATCGCTACCT--
--------ACCAATCTGGAGTGGCCTGCTTC-----------------------TTTCTTAGGTCTCTCCCTGC-CTCTT
TGTA--TGGGGCCAATTTCATATTTCACCTCAAAAGCTACTCA---TTTTGTGAAGGAACA---GCACCC---CTTTGCA
AAGTCTCTTCTCCTGAGTTGCTGTTCTGAATTGGGCTCTG-GTATGAT
>Equus_caballus
ATATTCCTGGAAGAAGCTAAAATAGCAGAAAGCAGGTCACCCAGCTCCTG---AGCATC---TGTTGGAAGAGGTCATTG
AGAGGACG-------TGGTTGACCT--GTGAGCTTGTCCTGT--CAATCGGAGGCTCCTCAGCTCCCCCTCTGTCCTTGG
AATGTGCATTCCACTCACCATTCCC-TCACTAGGAGCTGTTTCAAGGATGCACCTTTGATCAAGAGAGCAATATGTTATT
GAGGCCATCTGAATGGTATATGTGACTGAGCCCAGGTAAGGCCTCTAGACAAAC-TTTAAGATTCTGGAGAGC---GGGT
CCAGAGATCTACTCATTTTGTGGC-AACTAGGGCAAGCCTCCTAAGTCAAGTTCCTTTGCTTATTAAACCTGCCATCT--
--------ACCAATCTGGAGTGGC-TGTCTC-----------------------TTTCTTCAGTCTCTCCTCACCCTCCG
TGTA-AAGGGGCCAGTTTCAGATTAGACCTGGGAAGCACCCAA---ATTTGTGAACCAG-----------------TGCA
AAATTGCTTCTCCCGAATTGCCAAGCTGAATTGGGCTCTG-GTATGAA
>Ceratotherium_simum
ATATTCCTAGAAGAAGCTAAAATAGTGGAAAGCAGGCCATCTAGTTCTTG---AGCATC---TGTTGGAGAAGGTCATAG
A---GATGTGACCTCTGGTTGACCT--GTGAGCTGGTCCTGG--CAATCAGAGGCTCCTCAACTCCTCCCCTGTCCTTGG
AATGTGCATTCTGCCCACCATTCCC-CCAATAGAAGCTGTTTCAAGGATGCAGCCTTGATCAAGAGAGCAATATGTTGTT
GAGGCCATCTGAACAGTATACATGACTGAGCCCAGGTAAGGCCTCTATATAAAC-TTTAAGTTTCTGGAGGGC---GGGT
GTGGAGATCTACTCATCCTGTGGC-ACCCAAGACAAGCCTCCTAAGAAAGTTCTC-TTGCTTATTAAACCTGCCACCC--
--------ACCAATCTGGAGTGGTACGTC-------------------------TTTCTTAGGTCTCTCCCTGCCCTCTA
TATA-TGGGGGCCAGTTTCAGATTTCACCAGGGAAGCTCCGAA---GTTTGTGAACCAG-----------------TGCA
AAATTGCTTCTCCAGAATTGCCATTCTGAATTGGGCTCTG-GTATAAA
>Myotis_myotis
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNN---NNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NATGTATATTTCCCCCACCTGTCCC-CAAATAGGAGCTGTTTTAAGAACATAGCTATG----A---GGTAGTACCATGAT
TAGACAATTAGGTCTGCAAATATGACTGAACCCAATTAAGACCTCTATAAAAAC--TTAAGATTTTGGCTGGCAGGGAGT
GCAGAGAGCT--------CGCTTTCACTCAAGACAAGCCTGGTATGTAAGTTCCC-TTGCTTATTAAATCTCCCACCT--
--------ACCAATCTGGAGTGGCCTGCCTT----------------------TTTCCTTTGGTCTTTCCTTGCCATCTG
TTTATGGGAGGACAATTTCAGATT-CACCTAGGAAGCTCTTGA---GTTTGCAATCTAACA---GGACAC---TTTTGCA
AAATTGCTTCTCATGAATTGCCCTTCTGAATTGGTCTCTG-GTATGAT
>Rousettus_aegyptiacus
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNN---NNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGGATCTGTGCCAATTAGAGTCTCCTCACCACCTCCCCTGTCCTTAG
AATGTATATTCTGCCGACCCTTTCT-CCTTTAGGAGCTGTTTCA-GGCTATAACCGTG----AGATAGTATGGTCTTGTT
GAGACC-TCTGGATTGAACATATGGCTGAACCCAGTTAAAGCTTCTATATAAACATGTAAGATTTTGGTAGGC---GGGT
ATTCAGATCTA-TGCTTTTGCAGCTGCTCCAAACGAGCCTTGTATATAAATTCCC-TCACTTATTAAATCTACCACCT--
--------ACGAATCTAAAGTGGCCTGTCTT-----------------------TTTCTTTGGTCTCTCCTTGTCCTCTG
TTTATAGGAGGCAAGTTTCAGATTTCACTTGGGAAGCTTGTGA---GCTCACAAACTAACA---AGAGCC---CTTTGCA
AAATTGCTTTTC-------------CTGAATTGGGTTCTA-GTACTAT
>Condylura_cristata
GTATTCCTCGAAGAAGCTAAAACAACAGGAACCAGGTTAACTAATTCGTT---AGCACA---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------CCTTGCC
A-TTGTTTTCCCCAGAATTGTCTTTCTGA----GGTACTGCCTACAAT
>Erinaceus_europaeus
ATATTCCTAGGAAAAGCTAAAATATAAAAAATCAAGTTA--------ATT------GTA---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------CTTTGAA
AAATGGCTTCTCTTGAATGGTTGTTTTGAGCTGGACACTA-TTTTTAT
>Homo_sapiens
ATGTTCCTAGAAGAAGCCAAAGCAGCAGAAATCAGGTCATCTAGATCATT---AGCACC---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------CTTTGCA
AAATTGCTTCTTCTGAATTGCTTTTCTGAATTGGGTTCTG-GTATGAT



Dog15_LTR

>MER57LA
-------------------------------------------------------------TGTGTTAAAAGATAAACTG
----------AGGCATATTAAAAA-TTTTAAGAGTTTATTTGAGC-AAAAATCGATTCAAATCAGGCAGCACCAAACCAG
GAAG----TGGTTAGGAGCGCTCCACCGACAGGAGCTAGGGGAAAGACTTTTATAGAGAAGAGGCAGAAGCAAAGCAAGG
AAATTATTTGATTGGCT--------------ATAGCTTAAGCAGTTGCCTTATTTGGGAAAGCCTAGTTGGCTGTTTGTG
-ATTGGTTGTCCTTAG-GTTTTGA--TTTCTTAACCTTGAGGCATTTACA-GGCTTAGGTTTTGGTTTGCTTAC-GTAGG
CTG-CTAAGGCATTAGAACCAC------CTCAGTCTAATGGCCTCCTTGTTTAATTAATTTAACA---------------
-----------------------------------------------
>Canis_familiaris
TGTATTAATTATATGTACCTCTGCAAAAAGATACAACTAAGAGACCTTTG---AA-GC-----TGCTAAAAGATAAACTG
----------AGGCATATTGAAAA-TGTTGAG-----TATTGAA--AAATGGTAATTGGAATCGGGCAGAGCCAACCCA-
TAAG----TGGTTAGGAGCGCTCCACAGAGAGGAGCTCAGGGAAAAACTTTTATAGGGAAAAG-----------TTATGA
AGATTAT-TGATTAGCT--------------ATAGCTCCA--------------------AGTATACTTGGCTGCTTGTG
-ATGGATTGTCCTTGAGGTTTTGAT-TTTGTGA-TCTTGAGGCATT-ACA-GGCTTAGGTTTGGATTTGATTAC-TTAGG
CCA-GGAGGGCATGAGAGCCAC------TTCAGTCTAATGGCCTCCTCGCTTAAATAATTTAACA---CAAC---TAAGC
TCAACTT-AGTGGTGACTGTCAAAAGCCTTCCTGGAAAAT-ACTTTG
>Felis_catus
TTGTTAAATTATGCACACCTCCACAA--AAATACAACTCAGCGATCTTTG---AA-GC-----TGTTAAAAGATAAACTG
----------AGGCATATTAAAAA-TGTTGAG-----TTTTAAGC-AAAAGTGGATTGAAATGCACCAGTGCCAAGCCGT
TAAG----TGGTTGGGAGCTCTCCACAGACAGGGGCTCG--GAAAGATTTTTATAGAGAGAAAGCAA------AGTAAGA
AAATTGT-TGATTAGCTTATTAATATTATTGATAACTTAA--------------------AGTCTAGTTGGTCGTTTGTG
-ATTGGTTGTCCGTAGGGTTTTGTTATTTGTGA-CCTTGG-----------GGCTTCGGTTTTGGCTTCATTAC-TTAAG
CTC-CCAGGGCATGAGAGCCAC------TTCAGTCGAATGGCCTCCTTGTTTGATTAATTTAACG---CGGC---TAAAC
TCAACTC-AGTCACGCCTGTCAAGAGCCTTCCTGGAAAAT-ACTTTG
>Manis_pentadactyla
TGGTTAAATCCTGCACACATCTGCAAAGAGATACAACTGAGAAGTCTTAA---AT-GC-----TGTTAAAACATAAAGG-
----------AGGCATGTTAAAAA-TTTTATGAGCTTAGTTGAGC-AAAAATCTATTGGAATCAGGCAGTGCCAAATGG-
AAAG----TGGTTAGGAGCGCTCCACCAATAGGAGCC----GAGAGACTTTTACGGAGGAAAGGCAGAAGCACAGTGAGG
ACATTAT-TTATTGGCT--------------GTAGTTTAA--------------------AGCCTAGTT----GCCTGGG
-ACTGGTTGTCCTTAGCATTTTGAT-TTCACAA-CATTGAGGCATTTACA-------GGCTCTGGTTTACCTAC-GCAGG
CTGCCCAGGGCATTACGGCCAC------CTCACTTTAAGGACATCCTAGCTTAATTAGTTTAACA---CAGC---AAAGC
TCAACTC-AGCCATGCCTGCTAAGGGCCTTTCTGGAAAGT-ACTTTG
>Sus_scrofa
TGGTTAAATCATACACACCTCTGCCACAAGATACAACAAAGAGATCTCTG---CA-GC-----TATGAAAAAAAAGAAAG
AAAAAAAAACAGGCCTATTAAAAT-TTTTAGGAGCTTATTTGAGC-AAAAATATATTGGAATCTGGCCATGCCAAACCA-
GAAG----TGGTTACAATCACTCTACCCACAGAAGCTTG-GAAGAGAATTTTACAACGAAAAGGAAG------AGTAAAG
AAATTAT-TGATTGGCT--------------ATGTCTTAA--------------------AGCCTAGTCAGCAGTTTGTG
-ATTTGTTAACCTTAG--TTTTGAT-TTCATAA-CCCAGAGGTATTCACA-GGCTTAGGTTTGGGTTTGATGACATTAGG
CTG-CCTGGGCATTAGAGACACCGCGGTCGCGGTCTCGTGGCCTCTGAACTTAATTCGCTTAACA---CAAT---TAAGC
TGAACTC-AGTCATGCCTTTAAAGCCCCTTTCTTGCAAAT-ATTTTG
>Tursiops_truncatus
TGGTTAAATTATGCACACGTCTGCAAAAGGATACAACCAAGAGATCACTG---AA-GC-----TGTTAAAAGATAAAC--
----------AGGTCTATTAAAAAATTTTAGGAGTTTATTTGAGC-AAAAATCGATTGGTATCTGGCAGTGCCAAACCA-
GAAGGGGTTAGTTAGGAGCACTCCACCTACAGGAGCTCG-GGAGAGACTTTTATAGAGAAAAGGCAGAAGCAAAGTAAAG
AAATTAT-TGACTGGCT--------------ATGGCTTAA--------------------AGCCTAGTTGGCAGTTTGTG
AATGGGTTGTCCTTAGCATTTTGAT-TTCATAACCCTAGAGGCATTTATAGGGCTTAAGTTTTAGTTTGATGAC-CTCCG
CTG-CCTGGGCACTAGAGCCAC------CTCAGTCCCATGGC--TCTTGCTTAATAATTT--ACA---CAAC---TAAGC
TCGACTCAAGTTGTGCCTATCAGACCCTTTTCTTGANNNNNNNNNNN
>Equus_caballus
TGGTTAAATTATGCACATTTCTGCAAAGAGATACAACTAAGAGATCTTTG---AA-GC-----TGTTTAAAGATAAACTG
----------AGGCATATTGAAAA-TGTTAAGAGTTTATTTGAGC-AAAAATCAATTGGAAT-GGACAGCACCAAACGA-
GAAG----TGGTTGGGAGTGCTCCACTGATAGGAGCTCGCAGAGAGACTTTTGTAGAGAAAAGGCAGAAGCAAAGTAAGG
GAATTAT-TGATTGGCT--------------ATCGTTGAA--------------------AGCCTAGTTGGCTGTTTGTG
-ATTGGTTGTCTTTAGCATTTTGGT-TTTTTTACCCTTGAGGCATTTACA-GGCTTAGATTTTAGTTTGATCCC-TTAGG
CTG-CCAAGGCATTAGAACCAC------TTGAGTCTAATGGTCTCCCTGCTTAATTAGTTAAATA---CAAC---TAAGC
TCAACAC-AGCCATACCTGTCAAGGGCTTTTCTGGAAAAT-ATTTTG
>Ceratotherium_simum
TGGTTAAATAATGCACATTTCTGCAAAGATATACAACTAAGAGATCTTTG---AA-GC-----TGTTTAAAGATAAATTG
----------AGGCAAATCAAAAA-TTTTAGGAATGTATTTGAACAAAAAATCAGTTGGAAT-GGGCAGCTCCAAACCG-
GAAA----TGGTTAGGAGTGCTCCATAGACAGGAGCTTGGGGAGACATTTTGGTAGAGAAAAGGCAGAAGCAAAGTAAGG
AAATGAT-CGATTGGCT--------------ACAGCTTAA--------------------GGCCTAGTTGGCTGCTTGTG
-ATTGGTTGTCCTTAGCATTTTGGT-TTTGTGA-CCTTGAGACATTTACA-GGCTTAGGTTTTGGTATGACTAC-TTAGA
CTG-CCAAGGCATTAGAGCCAC------CTCAGTCCAACGGCCTCCTTGTTTAATTAATTTA------------------
--AGCTC-CGTCATGCCTGTCAAGGGCTTTTCTGGAAAAT-ACTTTG
>Myotis_myotis
AGGTTAAATCATGCACACCTCTGCAAAGAGATACAACTAAGGGATCTTTG---CA-GC----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TAATC
TCAACTC-AGTCATGCCTGTCAAGGGCCTTTCTGGAAAAT-ACTTTG
>Rousettus_aegyptiacus
GGTATCAATTATGCACATCTCTGCAAAGAGCTACAACTAAGGGATCTTTG---TA-GC----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TAATC
TCAAGGC-AATCATGCCCGTCAAAAGCCTTTCTGGAAAAT-TCTTTG
>Condylura_cristata
AGGTTAAGTGATGCACACCTCTTCCAAGACAGAAAGCTAAGAGATCAATT---TA-AC----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TAAGC
TCAAATC-AGCCATGCCTATCAAGGGTCTTTCTGGAAAAT-GCTTTA
>Sorex_araneus
TGGTTAAATAATGAGCATCTCCACACTGATACACAACTAGAAGATCTTTG---CAGGA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TATGC
TCAATTG-AGTCAAGCCTCTTAAGAAACTTTCTAGAAAATAATTTTG
>Homo_sapiens
TGGATAAATTATCCAAACCTCTGCAAAGGGGTACAATCAAGACGTCTTCA---TA-GC----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TAAGC
TCAACTC-GATGATGCCTGGTAATGGAGTATCTGGGAAAT-ACTTTA



Dog16_LTR

>ERV54-EC_LTR
----------------------------------------------------------------------TGTTAAAAAC
AAG-ACAACAGGCCCAAAATGGAGTCACTTATGCTAAGC-----------------------------------------
-----------------------------------------------------------CCCACGTCACCAAACCGAGAC
-------------TTAACTTAATTACAGTTTCGGC----------TCTCCCAGAAATGGAATCTTAAACCAGTCAATCAG
GAATCACCTGATCAGCACTAGTTAGGTAATCTGCCTGATAGACCCCTGCCATCCCCTAAAGGAAAGTAACCTTGCAATAA
CCAATCCACTTTTTTGCCTAGTATAACTTCCTTGTTCCTGCTCCCTTCTGCCTATAAAAGTCTTTCATTT-----TGTAC
AGCTCCTCGGAGCTCCTTTCT----ATCTGCTAGATTGGATGCTGCCCAATTCATGAATCATTGAATAAAGCCAATAAGA
TCTTTA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AA
ATTTACTCAGTTGAATTTTG---TTTTTTAACA-----------------------------------------------
----------------------
>Canis_familiaris
TTTAAGGAAAAAAAACACAACTGTACTCTATCATAAGGCCGAAATGGCTTTTTGCTAAAT---CAGT---TGTTAAAAAC
AAG-ACAACAGGCTCAAAATGGAGTCACTTATGCTAAGC-----------------------------------------
-----------------------------------------------------------TCCACATCACCAAATACAG--
----------------CCTTAATTACACTTTTGGCC---------TCACCCAGAAATGGAATCTTGGAAC-GTCCGTCAA
GAACTACCTTATTAGCACTAGTGAGGTCATCTGCCTGACAGACCACCCCCATCCCCTAAATGAAAGTGATCTTGCCACAA
CCCATCCACTTTTTG--------------CCTTTTTCCCACTCCCTTCTGCCCATGGAAGGCTTTCATTT-----GGTAC
AGCTTTTTGAAACTCCTTTCT----ATCTGCTAGATGGGATGCTGCTAGAATCACGAATCATTAAATAAAGCCAGTAAGA
TCTTTA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AC
ATTTACCCCATGGCATTTTG---CGTTTTAATA---TTTT---GAATTTCT-----------------------------
-------------------TCA
>Felis_catus
GTATAGAAAAAAAA----AATTATATTCTACCA-AAGGCAGAAACAGCTTTTAGCTAAAT---CAAT---TGTTAAAAAC
AAG-ACCACAGGCTCAAAATGGAGTCACTTAAGCTCAGC-----------------------------------------
-----------------------------------------------------------TCCATATCACCAAACTGAG--
----------------ACTTAATTACACTTTTGACC---------TCTTCCAGAAATGGAATCTTAA---AGTGAATCAG
GAACTACCTGATCAGCATGAGTGAGGTCATCTGCCTGATAGACCCCTGCCATCCCATAAAGGAAAGTGGTCTTCCCACAA
CCATTCCACTTTTTG--GCAGTATAATTTCCTTGTTCCCACTCCCTTCCGCCTATAGAAGTCTTTCATTT-----TGTAC
AGCTTTTGGAAGCTCCCTTCT----GTCTGCTAGGTAGGATGCTGCTCGAGTCATGAATCATTAAATAAAGCCAGTAAGG
TCTTCAATTTTTTTAACCTTTATTTATTTTTGAGAGAGAGAGAAAGTATGAGCAGGGAGGGGCGGAGAAAGAGAGGGAGA
CACAGAATCTGAAGCAGGATCCAGGCTCCCCACTGTCAGCACAGAGCCTCATTCAGGGCTCAAACTGGAACTCTCCAACG
GTGAGATCATGACCTGAGCCTAAGTCCGATGCTTAACTGACTGAGCCACCCAGGCGCCCCAAGCCAATAAAATCTTTCAA
ATTTACTCAGTTGAATTTCG-------TTAATA---CATT---GAATTTCTTCGGTTATTAA--GTTATCT-------GG
AATGAAACTTC--TTTTTCTCA
>Manis_pentadactyla
TTAAGAAAAAAACA--------CTATTTTACCATAAAGCAGAAGGGGCTTTTTGCTAACT---CAAT---TGTTAAAAAC
AAG-ACAATTGGCCCAAAATGGAGTCACTTATGCTAAGC-----------------------------------------
-----------------------------------------------------------CCCACGTCACAAAAGGGAGCT
-------------TTACCTTAATTTCACTTTTGTCC---------TCTCCCAGAAATGGAATCTTAAGTCAGTAGATCAG
GAACTACC------------GTGAGGTA---TTGCTGATAAACCCCTGCTATCCCTTAAAGGAAAGTGACCTAGCCACTA
CCAATCCACACTGTG--CTAGTACAACTTCTTCA-TCCTGCTCCCTTCCACCTAGAAAAGTCTTTCATTT-----TGTAC
AGCTCCTTGGAGCTCCTTTCTAGTAAACAGCTGGATAGGATGCTGCCAGGTTCATGGATCGTTGAATAAAGCCAATATGA
TCTTTA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AA
ATTTACTCAGTTGAATTTTGTTTTTTTTTAACA---CTTT---GAATTTCTTTGGTTATTAAAAGCTTTCT-------GG
GATGAAACTTC--TTTTTCTCA
>Sus_scrofa
TTAAGAAATA---------------------------GCAGAAAGAGCTTTTTGCTAAAT---AACT---TGTTAAAAAT
AAGAAAAATAGGCCCAAAATGGAATCACTTATGCT---------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TCTCTCAGAAACAGAATCTTAACCTAATCAATTGG
GAATCA-CTGATCAGCACTAGTGAGGTAATCTGCCTGAAAGACCTCTGCCATCCCCTAAAGAAAAGTGACCTTGCCACAA
CCAATCCACTTTCTG--CTTGTATAACTTCCTTG-TCCCACTCCCTTCTGCATGTAT--GTCTTTAATTT-----TGCAT
AGCTCCTTGGAACTCCTTTCT----AACTGCTAGATGGACTGCTACCTGATTCACAAATCCTTGTATAAAGCAAATAAGG
TCTTTA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AA
ATTTACTCAATTAAATTTTGTT-TTTTTTAACA---CTTT---GAATTTCCTTGGTTGTTAATAGATTTCTTAAAAAAGA
AAAAAAAAGAAAATTCTTTTTC
>Bos_taurus
TTAAGAAAAAA-------------GTTCTACAATAA-GTGAAAAGAGCGTCTGGCTAAGT---CAAT---TGTTAAGAGC
AAG-ACAACAAGCCCGAATTGGAATCACTTATGCAGACCTGGGTTCAACCCCTGGGTCAGGAAGATCCCCTGGAGAAGGA
AATGGCAACCCACTCTTACCTGGAAAATCCCATGGTCAGAGGAGCCTGGTAGGTTACAGTCCATGGGGTCAAAAAGAGTC
GGACACGGCTGAGTGACTTCACTTTCACCTTTCACCTTTCATGCTTCTCCCAGAAATGAAATGTTAACCTAATCAATCAG
GAATCTCCTGATCAGCACTAGTGAGACAACCTGCCTGATAGAGACCTGCCATCCTTTAAAGAAAAGTGACCTTGCCACAA
TCAATCCACTTTTTG--CTAGTATAATTTCCCTG-TCCCACTGCCTTTTGCCTATATCAGTCTTTAAACTTTGTATGGAT
AGCTCTCTGGAGTTCCTTTCT----ATATGCTAGATGGGAGGCTGCCTGATTCATGAATCAATAAATGAAGCCAATAAGA
CTTTAA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AA
ATTTACTCAGTTGAATTTTA--------TAACA---CATT---GAATTTCTTTGATTGTTAAAAGTTTTCT-------GG
AATAAAACTTC--ATTTTCTTA
>Myotis_myotis
TTAAGAAGAAAAGT---------GACTCTGCTACAAGGCAGAAAGAACTTCTTGCTAAAC---CAGT---TGTTAAAAGC
AAG-ACAACAGGCCCCACATGGAGCAACTTATGGGAAGT-----------------------------------------
-----------------------------------------------------------CCCATGTCACCAAAAGGAG--
------------------ACAATCACACCTGCAGCC---------TCTCCCGGAAATGGGAGGGTAAACCAGTCAGTGAG
GAGCAGCCTGGCCAGCACT-GTGAGGGCATCTGTC---------------ATCCCC--GAGGAAAGTGTCCTGGGCACTG
-CAGTCCAAGCTCTG---CTATAGGACTTCCTTGTTCCCACCTCCTTCTGCCCAGAACAGTCTCTCATT------GGCAC
AGCTCCTCGGAGCTCCCTTCT----ATTGGCTGGATGGGATGCTGCCAGAGCCATGAATCACTGAATAAAGCCAATA---
TCTTTA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AA
ATGTACTCAGTCCAATTCTGG--TTTTTTAACA---C-TT---GAATTTCTTTGGCTCTTAAATGTTTTCT-------GG
AATGAAACTTCTTTTTTTCTCA
>Rousettus_aegyptiacus
TTAAGAAGAAAA---------TGTATTCT-CCATAAGGCGGAGAGAGCTTTCCGCTAAAT---CAGT---TGCTAAAAAC
AAG-ACAACGGGCCCCAAATCGAGTC------------------------------------------------------
------------------------------------------------------------CCATGCCACCAAAAGGAG--
--------------------AATTACACTTACGACC---------TCTCCCAGAAATGGAATCTTAAACCAGTCGGTCAG
GAGCCACCTGATCAGCACCAGCGAGG---------------------------CCCTAACAGAAAGTGACCTCGCCACAG
GTGACACACCTTCTG---------CATCTCCCCG-TCCTGGCCACTTTGGCCTAGGACAGGGTTTCACTT-----CGCAC
TGCGCCTCGGGGCTCCTTGCT----CCCTGCTGTATGGGGTGCTGCCCGGCTCAGGAATCGTTGAATAAAGCCAGTAAGA
TCTTTC--------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------GA
ATTTGCTCAGTTGAATTTTG---TTTTCTAACA---CATT---GAACTGCTCTGGACATTAA--GTTTTCT-------GG
AATGAAACTTC--------TCA
>Equus_caballus
TTAAGAAAAAAA---------TGTATGCTATTATAAGGCAGAAAGAGCTTTTCGCTAAAC---CATT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------GAATTTCTCTGGTTGTGAGAAGTTTTCT-------GG
AATGAAACTTC--TTTTTCTCG
>Ceratotherium_simum
TTAAGAAAAAAA---------TGTATTCTACTATAAGGCAGAAAGAGCCTTTTGCTAAAC---CATT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------GAATTTCTCCAGCTGTTAGAAGTTTTCT-------GG
AATGAAACTTC--TTTCTCTCG
>Condylura_cristata
TTAGAAAATAA----------CTTATTCTGTCATAAGACAGGAAATGTTTTTTTCTAAAT---TATT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------CAATTTCTCAGGTTATTAAA-ATTTTCT-------GG
AATGAAACTTC--------TCA
>Sorex_araneus
TTAAAAAAAAA-----------------------AAAGCAGGAAAAGCTTTTTGTCAACT---CATT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------AAATTTTCTGAGTTTTCAAAAGTTTTCT-------GA
AATGAAATTTC--TTTTTCTCA
>Homo_sapiens
TTAAGAAAAAA----------TGTATTCTACCATAAGGCAGAAGCAGCTTTTTGCTAAGT---CATT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------GAATTTCTCTGGTTGTTAAAAGTTTTCT-------AC
AATGACACTAC--TTTTTCTCA



Dog17_LTR

>MER57LA
-----------------------------------------------------------------------------TGT
TAAATTAATTAAACAAGGAGGCCATTAGACTGAGGTGGTTCTAATGCCTTAGCAGCCTACGTAAGCAAACCAAAACCTAA
GCCTGTAAATGCCTCAAGGTTAAGAAATCAAAAC-CTAAGGACAACCAATCACAAACAGCCAACTAGGCTTTCCCAAATA
AGGCAACTGCTTAAGCTAT------AGCCAATCA---AATAA--------------------------------TTTCCT
TGCTTT---------GCTTCTGCCTCTTCTCTATAAA-----AGTCTTTCCCCT-----------AGCTCCTGTCGGTGG
AGCGCTCCTAACCACT----------------------TCCTGGTTTGGTGCTGCC---TGATTTGAATCGATTTTTGCT
CAAATAAACTCTTAAAATTTTTAATA-------------------------------------------------TGCCT
CAGTTTATCTTTTAACACA-------------------------------------------------------------
--
>Canis_familiaris
AAGTCTGTT------G-TTTTG-AAATCTTCAAGTATTCAATTTAGA-AAAAATTATTGTTTGACA---AGAAT---TGT
GAAGTTAATCAAACAAGGAGGCCATTAGATTGAAGTGGCTCTTATACCATGGAGTTGTGTGTAAGCAAACCCAAATCTAA
ACCTG-AGATCCTTCAAGGTGATAGAATCAAAATGCTAAGGACAATTAATTACAAAGAGCCAATTAGACT----------
----------TTAAGCTAT------AACCAAACA---AATAG-------------------------CTTCTTTTTCCCC
CTTTTT----------CTTCTGTACTTTGTCTATACA-----AGTCTTTTACCT-----------GGCTCCTGTCCTCAG
AACACTCCAAACCACT----------------------T-CTGGTCTAATATTGCC---CAATTCAAATAGAATTTTACT
CAAATAAAG--TTAAAATTTTTAATA-------------------------------------------------TGCCT
CAAATTATCTTTTAAT-------ATCAT---GAAATAC-AGAATGTATTTTAAAGGCATATTAAATTTTATTCCAAATGA
AG
>Felis_catus
AAGTTTGCT------G-TTTTATAAATCTTCAAGCATTCAGTTTAGATTAAGTTTATTGTTTGATG---AGAAT---TGT
GAAGTTAATTAAATAAGGAGATTCTTAGATGAAAGTAGCTCTAATGCCAGGGAGGTCTGTGTAAGCAAACCCAAATCTAA
AGCTGGAGGTCCTTCAAGGTTACAGAATCAAAATGCTAAGGACAACCAATTACAAACAGCCAATGAGGTT----------
----------TTAAGCTCT------TGCCAATCAGCCAATCAAATGCTGCTGCTGCTGCTGCTGCTGCTTCCCCTTCCCC
CTCTCTTCTCTTATTGCTTCTGCACTT----TATACA-----AGTCTTTTAACT-----------GGCTCCTGTCCTTGG
AACACTCATAACCATT----------------------T-CTGGTTTTATGCTGCC---TAATTCAAACAGGTTTTC---
--AATAAACTCTTAAAACTTTTAATTTTTTTTAATGTTTATTTATTTTTGAGACAGAGAGACAGAGCATGAACGGNNNNN
NNNNNNNNNNNNNNNN-------NNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NN
>Manis_pentadactyla
AAGTCTGCT------G-TTTAATAAATCTTCAGGTATTTAATTTAAA-TAAGTATATTATTTGAGG---AGGAT---TGT
GAA--TGAACAAAGGAGAAGGCCATTAGATTAAAGTGGCTCTAATGCCA-GGAGGTCTACATAAGCAAACCAGAATCTAA
GCCTGGAAATGCCTCA--GTTGTGAAATC-AAATGCTGTGGA-AACCAATCATAAACAGCCAACTGGGCT----------
----------TTAATCTGT------AGCCATTGA---AATAA--------------------------------TTTCTT
TTTTTA--------TGCTCTTGCACTTGCTCTGCATA-----AGTTTTTTGCCT-----------GGCTCCTGTCCTCAG
AATGCGCCTAATCACT----------------------T-CTGGTTGGGT-CTGCA---TAATTCAAATCAATTTTTGCT
CAAA-------CTTAAATTGTTAATA-------------------------------------------------TGCCT
CAGTTTACCTTTTAAC-------AGGGT---GAAATACAAAAATGTATTCTAGGCGTATATTAAATTTTATCCCAAATGA
AG
>Equus_caballus
AAGTCTGCT------G-TTTTATAAATC---AAGTGTTCAATTTAGA-TAAGTTTATTGTTTGAAG---AGAAT---TAT
TAAGTTAATTAAACAAGGCGGCCATTAGATTGAAGTGTCTCTAAAGCCGTGGAGGTCTACATAAGCAAACCAAAATCTAA
GACTGGAAATGCTTCAAAGTTACAAAACCAAAATGCTAAGGACAATCAATCACAAGTAGCCAACTAGGCT----------
----------TTAAACTAA------GGTCAATCA---AATAA-------------------------------TTTTCCT
ATTTTT----------CTTCTGCACTTTCTCTATACATTGTCGGTCTTTCCCCC-----------GGCTCCTGTCCTCAG
AATGTTCCTAACTACT----------------------T-CTGGTTTGGTGCTGCCAATTGATTCAAATTGACTTTTGCT
CAAATAAACTCTTAAAATTTTTAATA-------------------------------------------------TGCCT
CAGTTTATCTTTTAAC-------AGGGT---GACATAC-AAAATGCATTTTAGGTGTATATGAAATTTTATCCCAAATCA
AG
>Ceratotherium_simum
AAGCCCGCT------G-CTTTACGAATCTTCAAGTATTCAATTTAGA-TAAGTTTATTGTTTGAAG---AGAAT---TAT
TAAGTTAATTACACAAGGAGGCGATTAGATTGAAGTGGCTCTCAGGCTGTGGAGGTCTATGGAAGCAAACTAAAGTTT--
GACTGGAAATGCCTCCAAGTTACAAAATCAAAATGCTAAGGACAACCAATCACAAATAGCCAACTAGGCT----------
----------TTAAGCTAT------AGCCAAT-A---AATAA--------------------------------TTTCCC
TTTATT--------TGCTTCCACACTTTCTCCATACAGAATAAGTCTTTCACCT-----------GGCTCCTGTCCTCAG
AATGCTCCTAATTACT----------------------T-CTGGTTTGGTGCTGCC---CAATTCAAATTGGTTTTTGCT
CAAATAAACTCTTAACATTTTTAATA-------------------------------------------------CGCCT
CAGTTTATCTTTTAAC-------AGGAT---GACATAC-AAAATGTATTTTAGGTGTATATTAAGTTTTATCCCAAATGA
AG
>Condylura_cristata
AAGTCTGCT------G-CTTTATAACACTTCAAGCA-TCACTTTATG-TAAGTTTAATGTTTAAAG---AGAAT---TGT
TAAATTAATTAAACAAAGAGGCTATTAGA------TGGCTCTAAAGCCACAGAAGCCTAAATAAATAAACAGGAATACAA
ACCTGTAAATG-TTCAAGGTTATAAAATTAAAATGCTATGAACAGCACATT----------------GCT----------
----------TTAAGCTAT------ACTACATCA---AGTGA--------------------------------TTTCCC
TTTTTC--------TGTCTCTGAACTTTCTCTATGTAAGCCCCTCTTTTTATCTCTGAGGGATGGGGGTCAAGCCCCCAC
CTTGACTCTAAGGGGTGGGGGTGTGGGAAGGGTGGGAGCACTGGCTTGCCACTGCC---CAATTTGAATTGATTCTTGGT
CGAATAAAA-CTTAAAAAATTTAATA-------------------------------------------------TAACT
CAATTTATCTGTTAAC-------AGGGA---GAAATCC-AAAGTGCATTTTTGGTGTATATTAAATTGTATCTCAAACTG
AG
>Sorex_araneus
AAATATGCA------G-CTTTATAAAACTTTAAGAATTCACTTTAGA-TAAGCTTAATGTTTGAAG---AGATT---TGT
-AATTAAATTAAA-----AGTCCATTAGA-----CTGGTTGTAGTGCCCTAGAGGTCTAAGTTAGCAAGCCCAAATCTAA
GTCTGTAAA--CCTCAAGGTTA-GGAATCAAAACGCCAAGGGCAACCAATTAC----AGTCAACTAGTTT----------
----------TTCTGTTTTGCATCAAATCAATCA---TGAA---------------------------------TTCTCC
CACTTC---------------AAACTTATTTAAAAAAAT---AACCTTCCCTCA-----------AATTTTTTTC-----
-------------ATT----------------------T-CAGGTTTGGCACTGAC---CAATTCAAATAGATTTTTGCG
CAAATTTA---TTAAAACTTGTAATA-------------------------------------------------TGCCT
T-GTTAGTCTTTTAAG-------AAAGT---GATATAT---ACACAACTTTAGCTGTATACTAAATTGCATTGGAAATGA
AC
>Sus_scrofa
ATGCTTGCT------G-TTTTATAAATCTTCAT-TGTTGAATTTAGA-TGAGTTTAATGATTGAAG---AGGGA------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------AAAACACAAAAATGTAATTTAGATATATATTAAATTTTATCCCAAATGA
AG
>Bos_taurus
AAGTTTACT------T-TTTTATATATCTTCAAATATTCAGTTTAGA-GAAGTTTAATATTTGAAA---AGGGA------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------AAAATAC-AAAATGTATTTTTGGTGTATATTAAATTTTATCCCAAATGA
AG
>Myotis_myotis
AAGTCTACT------A-TTTCATAAATCTTAAAGTATTCCATTTTGA-TAAATTTAATGTT-AAAG---AAGGC------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------AAAATAC-AAAATATATTTGAGGTATATATTAAATTTTATACCAAATTC
AG
>Rousettus_aegyptiacus
AAGTCTGCT------GTTTTTATAAATATTCAAGTATTCAATTTATA-TAAGTTTAATGTTTAAAG---AGGTC------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------AAAATGC-AAAATATA-TTAAGGTGTATATTAAATTTTATCCCAAGTGC
AG
>Homo_sapiens
ATGTTTGCTCTTTCAG-TTTTATAAATCTTCATGTATT-----------------------TGAAG---AAGGT------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------AAGATAT-TAAATGTATTTTAGTTGTATATTAAATTTTACCCCAAATGA
CA



Dog18_LINE

>L1MA9_3END
-----------------------------------------------------------------------GGAATCTAA
AAAAGTCAAACTCATAGAAGCAGAGAGTAGAATGGTGGTTGCCAGGGGCTGGG-----GGGTGGGGG-------------
---AAATGGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCT----GGAGATCTAATGT
-ACAGCATGGTGACTAT-----AGT---TAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAG--ATCTTAA
GTGTTCTCACCACACA--CAAAAAA---ATGG-TAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAAT
CATTTCACAATGTA------TACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATT
ATACCTCAATAAAGCTGGAAAAA---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------
>Canis_familiaris
TAGAA-CAAAAAGT---GGTCTCTCCCCTTAGGAAATTTATTATCTAATT---AGGGAAGGAATATGTT-----------
-AAGC-CAAATTCGTAGATACAGAGAACAGATTGGTGGTTGCCAGAGACAGG-------GATGGGTG-------------
---AAATGGGTGAAGG-GGGACAAAA-TTACAAACTTCCAGTTAT--AAAATAAATAAATAAGTCAGGGTGAGGTAATGT
-CCAGCATGGTGACTATCTAGCAGT---TAA------TGTATTATAGATTTGAACATTGTTGAGAGAATAG--ATCTTAA
AAGTTCTCATCAGAAG--AAAAAAA---TTCT----CTATGTGTAGTGGTGGA--ATTTAACTAGACTTAGTGTGGTGAT
CATTTTGCAATACATATACACATAAATATCAAATCAATATGCGATATACCTGAAACTAATATCA-TGTTGTATGTCATTT
TT--------------------------AAAAAGAATGTGTT--------------------------------------
---------------------------------------------------------------------TATAACTAG-C
AATAAGTAATACAAAGACTTTTTTAATGTTTTATTTATTTTTTTAAAGATTTATTTATTTATTTATCCATGATAGACAGA
GAGAGAGAGAGAGAGGCAGAGACGCAGGAGGAGGAAGAAGCAGGCTCCATGAAGGGAGCCCAACGTAGGCCTCAATCCCG
GGACTCCAGGATCACGCCCTGGGCCAAAGGCAGGCACTAAACTGCTGAGCCACCCAGGGATCCCTACAAAGACTTTTACA
TATGATACTGAAACTTTAAAT
>Felis_catus
TAGAA-TAAAAAG------------CCCTTGAGGAGCTCGTTATCTAATC---AGACAAAGGATGTTTT-----------
-AAAC-TAAGCTCATAGATGCAAAGAACAGATTGGTGGGTTCCAGAGGCAGGA------GTTGGGTG-------------
---ACATGGGTGAAGG-GAGCCAAAA-TTACAGACTTCCAGTTGT--AAGATAAATAAGTCA-----GGTGATT--ATGT
-ACAGCACGGTGACTAG-----AGT---TAATAATACTATATTTCATATTTGAAAGGTGCTGAGAGAATAG--ATCTTTC
AAGTTCTCGTCAAAAG-AAAAAAAA---TTCTACAACTATGCGTAGTGATGGG--TGTTAACTAGACTTACTGT-GTGAT
CATTTTGCAAAATATATACATACAAATATCAAATCATTATGTTGTATACCTGAAACTAATATAA----TGTATGTCAATT
ATACCTCAATTAA-------------AAAAAAAGAATGTGTT--------------------------------------
---------------------------------------------------------------------TATAATTAG-C
AACATG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------AAAGGCCTTTAAA
CAAGATACAGGAGCTTTAAAT
>Manis_javanica
TAGAA-TAAAAAGT---CATCTTCGCCCATAGGGAACTCATTATCTAATA---AAGGAAAGAATATGTT-----------
-AAAC-CAAATTCGTAGATACAGAGAACAGATTGGTGGTTGTCAGAGGCAAGGGTTGAGGGTGGGCA-------------
---AAATACATGAAGG------------TATAAGCTTCCAGCTAT--AAAATAAAAAAGTTCT----GGGGATGTAATGT
-ACAGCATGGCAGCTAT-----AATATATAATAATACTATATTGCATATTTTAAAATTGCTAAGAGAGCAA--ATCTTGA
AATTTCCAATCACAAG-GAAAAAAAAGATTCCATAACTATGTATGATCATGGA--TTTTAACCAGACTTATTGTGGTGAT
CATTTCACAAAATATACA------AATATCAAATCATTATATTGTACACATTAAACTATTATAA----TGTATGTCAATT
ATACCTCAATTTTT------------TAAAATAGAAA--GTT--------------------------------------
---------------------------------------------------------------------TATAATTAGGA
AGT-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------AGAGGCTTTTAAA
AAAGATGCAAAAGCTTTAAAT
>Sus_scrofa
TAGTA-TAAAAAGT---CATCTTTACCCTTGGGGAACTCATTATGAAATT---AAGGAAGGAATGTGTT-----------
-AAAC-CAAACTCAGAGATACAGAGAATAGACTGGTTGTTGGCAGAGGTGGGG----GCAGGGGATA-------------
---AAATAGGTAAAGG-CAGTCAAAACTTAGAAATTTCCAGATAT--AGGATAAATAAGTCCT----GGGGATGTAATGT
CACAGCATGCT-----------AGT--------AAACCACATTGCCTATTGGAAAGTTGCTAAGGGAGTAGTAATTTTAG
AAGTTCTA-CTACAAG-AAAAAAAA---TCCTATAAGTATGTATAGCGACAAA--TTTTAACTAAGCTTATGGTGATGAT
CATTTTGCAGTATATGCA------AATATAAAATCATTGTGTTGTGCCCTTGAAACTAATGTAA----TGTATGACAATT
ATACCACAACAAA-------------AAGT-------GTGTT--------------------------------------
---------------------------------------------------------------------GATAATTAG-A
AATGCA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------AGAGGCCTTTAAA
TAAGATTCAGAAATTTTGAAT
>Tursiops_truncatus
TAGAA-TAAAAAGT---GGTCTCTGCCCTTGGGGAACTTATTATGTTATT---AAGGAAAGAATGTGTT-----------
-AAAC-CAAGCTCATAGATACAGAGAATAGATTGGCAGTTGGTAGAGGTGGGA--TGGGGGTGAGTAAATGGGGAGGGTG
AGTAAATGGGTGAAAG-GAGTCAAAACTTACAAACTTCCAGTTAT--AGAATACAT-AGTCAT----GGGGATGTAGTGT
CACAATGTGGTGACGAT-----AGG---TAGTAA-ACTGTGTTGCATACTTGAAAGCTGCTAAGAGAGTAGGAATCTTAG
AAATTCTCATCACAAGAAAAAAAAG---TTCTGTAACTATGTGTGGTGACGAA--TGTTAACTAGGCTTATTGTGGTGAT
TTTTTTGCAATATATAC-------AATATCAAATCATTATGTTTTACACCTGAAACTAATATAG----TGTATGTCAATC
ATACTTCAGTAAA-------------AAC--------GTATT--------------------------------------
---------------------------------------------------------------------TATAATTAG-A
AATGTG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------AGAGACCTTTAAA
TAAGATTCAGAAACTTTGAAT
>Equus_caballus
TAGAA-TAAAAAGT---GGTCTCTGTCCTTGGAGAACTCGTTATCTAAGT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------AGGGAAAGAATGTGTT--------------------------------------
---------------------------------------------------------------------TATAATTAG-A
AATATG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------AGAGGCCTTTAAA
TAAAATTCAAAAACTTTAAAT
>Ceratotherium_simum
TAGAA-TAAAAAGT---AGTCTCTGCCTTTGGGGAACTCATTATTTAATT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------ATGGAAAGAATGTGTT--------------------------------------
---------------------------------------------------------------------TATAATTAG-A
AATATG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------AGAGGCCTTTAAA
TAAAATTCAGAAACTCCAAAT
>Myotis_myotis
TACAAATAAAAAGGAGAGGTCTGTGCCTTTGGGGAATTCATCATCTAATT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------AGGGAAAGAATGTATT--------------------------------------
---------------------------------------------------------------------TATAATTAGAA
AAAATG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------AGAGACCTTTAAA
TAAGATTCAGACACTTTAAAG
>Rousettus_aegyptiacus
TGAAA-TAAAATGT---GGTCTCTGGCCTTGGGGAACTCATTATCTAATT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------AGAGAAAGAATGTGTT--------------------------------------
---------------------------------------------------------------------TATAATTAG-A
AATATG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------AGATGCCTTTAAA
TAAGATTCAGAAACTTTAAAT
>Condylura_cristata
TAAAA-TAAAAAGT---GATCTCTGCCTTTAGGGAATTCATTGTCTAATT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------AGGAAAAGATTGTGTT--------------------------------------
---------------------------------------------------------------------TGTAATCAG-A
AATATG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------AGAGGCCCTTAAA
TGAGGTTCAGAAACTTTAGAT
>Sorex_araneus
TTGAG-TAAAAAGT---GATCTCTG-CCTTGGGGAACCCATTGCC-AATT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------AAAGAAAGAATTCTTT--------------------------------------
---------------------------------------------------------------------TACAATCAG-A
AATATA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------AGAGAGTTTTAAA
TAAGAGATAAAAATTTTAAAT
>Ictidomys_tridecemlineatus
TAGAA-TAGAAGGT---GGCCTCTGTCCTTGGAGATCTCAATATGTAATT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------AGGTAACATATGTTTT---TGTAGGACATGGGATGCTGCTCCACATCAGATGGT
GGCTTAGCATACACAATACCCTAGGTTCAATCCCAGCACTACTCCCCAAAAAACTAAAGAGAATGTGTTTATAGTTAG-A
AAT-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------GGAGGATTTTAAA
TCAATTTCAGAAACT--AGAT



Dog18_LTR

>CARLTR7
---------------------------------------------------------------------------TGTAG
GGGCCGAGGGCAGGCCGCCCCAAG--ATGGGCCACTTTGGCATGAAGATTATTTTGAGCTGAAGGCAATCGAGACCCTGC
GGGCTCAAGAGAAAC-TTTTGCCCCTCCCTTAACTACATAGAAGAATCTAAATTGGGGG---TCTTTCCCAGAATAAGGG
TTATTAGCAGAGATAA---ATTTTATCTGAGTGACCCATCTGTATGGCAGGGCAAACATCTAATTACCAA-ACATCTGCT
CTTCTTATCGCCCTGTGAANTGCATTCCTTTCCTCTGAAGTCCCAGACCCCTACCCCCTTCTCCTTAGTTCAGGATGACA
TATANACCTCATTTTGCCTGACTG-----TCTTTGGAATTTCCATGTCTGTGTGGATTCCCCGTACGTACGCTATTAAAT
--------------TTGATTT-----------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------TCTCCTG
TTAATCTGTCTCATGTCAATTTGATTCTTAGTCCAGCTAGAAGGACCTT-GAAGGGGA--CAGGAATTCTTG----CTCC
CCGACA--------------------------------------------------------------------------
---------------
>Canis_familiaris
CTAGGAGTAGAAGCAATATGTGCTATTTC------------TGTTCCAAGG---TTTTAGAGAAG---CAGG---TGAAG
GGGAACAGAATATGCCACCTCAAA--GTGTGCCA-----GGATG-----------GAACTGAAGGCAATCAAGACCCACC
AAAGTTGGGAAAAGC-TCTTACTTCCTCCTTAATTGTCTAAAGCAATTTAGAAAGGGG----CTTGTACCAGAAAGAGAG
CTATTACAAGAGATCA-CTTTTTCATCTGAAAGGCTTATCTGCATGGTATGCCAAACATTTATTTATCAA-ACATTTGCT
CTTCTCATCTTACTGTGAATTGTCTTGCTTCTCTTTGAAGCTCCAGATCCCTATTCCTTT--CCTTGGCTCAG-------
------CCTGTATT-GCCTTATTA-----TCTTTGAA--TAGCATA-TTTTATGGAGCTTTTGTATGTA-AAAATTAATT
-----------------TTTT-----------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------TTCCCTG
TTAATATGTTTCATGTTAATTAAATTATTAGACCAGCCA--AGAACCTA-GAAGGGTAGAGAGAAAAGTGTT--------
--------------------------------TTCCCTTCACCTTCTG-AAGACAGATACAAATAACCATGAGGCCTTAA
GGGATGGTGGATCCA
>Felis_catus
ATATGAGCATAAGCAACATGTGCTATTTC------------TGTTCCAAGG---CTTTTAAGAAG---CAGG---TGAAG
GGGAACAGAATCTGCCACCCCAACATGTGTGCCACCTTGGCATG-----------GATCTGAAGGCAATCAAGACCCATA
GGACTCAGGAAAAGCTTTTAATCTCCCCCTTAATTGCCTAAAGTAATTTAGAGAGGGA---TCCTGTACCAGGAAGACTG
CTATTACCAGAGATAA-ATTTTTCATCTGAAAGACTTATCTGCATGGCAAGGCAAACATTTATTTATCAA-ACATTTGCT
TTTCTTATCTTCCTGTGAATTGTCTTGTTTCTCTTTGAAGCTCCGGCTCCC-------TT--CCTCAGCTCAG-------
------CCCCAATT-ACATGGTTG-----TCTTTGAG--TCCCATATTTTTATGCAGTTTTCATATGGACAAAGTTCGAT
--------------CTGTTTTTTC--------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------TTTCCTG
TTAATCTGTCTTATGTCAATTTAATTATCAGACCAGCCA--AGAATCTT-GAAAGGTAGAGAGAAAACTATTTTCCCTCC
CCTACA---TGTA---TATGGACCCCACACATTTTCTTTCTCCTCATG-AAGACAGATACGAATGACAGTGAGGCCTTAA
GGAATGGTGGATCAA
>Manis_javanica
ATATGAGTGGGAGCAATATGTGCTATTGCTAATAGCTACTATGCTCGAAGGCTTCTTTCTAGAAG---CAAT---TGAAG
GAAAGCAAGATGCTCCACCCCCAA-----------GTTGGCATGCA---------GAGCTGAAGACAATCACGACTCAGA
AGACTCAAGAAAG-CTTACTACCTCCC-GTTAAGTGCCTAAAATAACTTAGAAAGAGGG---CCTCTACCAGGAATAGAG
CCATCGTCAAAGATAG-CTTTTCCATCTGAAAGACTTATCTGCATGGCAGAGCAAACATTTATTTACGAACACATTTGCT
CTTCTGATCTTTCTGTGAATTGTCTTCCTTCTCTTTAAAGCCCAATA-TCGTATCTCTAT--CCTTAGCTAAGGATGGTA
TGAAAACCTCAGTT-GACTGACTGACTGCCTTTTGAG--CTTCAAATTTTTATGAGGCTCCCATATGTACAAAATTAGAC
--------------TAATTTT-----------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------TTTCCTG
TTAATCTGTTTTGTGTCAGTTTAATTATCACACCAGCCA--ACAACTTA-GAAGGGCAGAGGGAAATTCTATTCCCTTTC
CTTACA---CAAG---CATGCACCCTGTACTTTTCTTTGGCCCTTCTG-AAGACAGATGTAAACAACAGTGCACCCTTAA
GGAATGGTGGATCCA
>Sus_scrofa
ATATGAATGGAAGCAATCTGTGTTATTTC------------TGTCCAAACA---CTTTTAAAAAG---CAGG---TGAAG
GAGAGCAGATTATGCAACCCTGAT--AGGTGTCATTTTGGCATGTA---------GGACTGAAGGCAGTCAAGACCCAGC
AGACTCAGGAAAATCTTCTTAACTCCCCTTTAACTGCTTGAAATAATTTTAAAAAGGAG---CCTTTACCAGGAAGAGCA
GTATCAATACACATAA--CTTTTCATTTGAAAGACTTATCTGCATGGCAAGGTAAGCTTTTTTTAAAATAAATATTTGCT
TTTTGCATCTTCCTGTGAATTGTCTT-CTTCCCCTTGAAGCCCCAGA-CCCTATCCCTTT--CCTTAGCTCAGTATGGCA
TATAAACATCAATT-CTCTG---------TCTTCGAG--TCTCATATTTTTATGGGACTGCCATACATGCAAAATTAAAT
--------------TTGTGTT-----------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------TCTCCTG
CTAGTCTGCCTTATATCAATT-AATTATCAGACAAGGCA--AGAACCTA-GAGAGGCAGAATAAAAATTATTTTTCCTCC
CCTACA---CAAG---TATGCAGGCTGCACC-TTGCTTTCCCCTTCTG-AAG--AGATGCAGATGACAGTGAGGTTTTAA
AGG-CAGTACAGCCT
>Bos_taurus
ATATGAATGGAAGCAATGTGTGCTTTCTC------------TGCCCAAGGG---TTTTTAAAAAC---CAGG---TGAGG
---------------CACCCCAAA--GCATGCCATTTTGGCATATT---------GAACTGAAGGCAAACAAGACCCAGC
AGATTCAGGAAAGTCTTCCTACCTCCC-CTTAACTGCCTAAAATAATTTAGAAAAGGGG---CCTGTACCAGGTAAAGTA
GTAATAGCACAGATAA-CTTTTTCATCTGAAAGACTTAGATGCATGACA-AGCAAGCATTTATTTACTAA-ATATTTGCT
TTTCTCATCTTCTTGTGGATCATCTGCTTTTTCTTGGATGTCCCAGATCCTTTTCC------TCTTAGCTCAAGATGGTA
TTTAAGCCTCAATT-GCCTGATTC-----TCTTTGAG--TCTCATTTATTTGCAGGACAGCCA----TACAAAATTAAGT
GTGTACTGCTCCTGTTGTTTTTGGTGGTTAGTCTCTAAGTCATGTCTGACTCTTGTGACCTCATAGACTGTAGCCCACTG
GGTTCCTCTGTTCATGAGATTTCCCAGGCAAGAATACTGGAGTAGTTTGCCATTTCCTTCTCAAAGAGATCTTCCTGACC
CAGGGATCAAAGCTGCATCTCCTGCATTGACAGATGAATTCTTTACCACTGAGCCACCAGGGAAGCACATGTTTCTCCTT
TTATTCTACCTTATATCAATTTCATCATCAGACTGAGCA--AGAACCTA-CAAAGGCAGATGAAAAGTTACTTTTCCTCC
CCTACA---TGGG---TATGCAGGTTGCACTTCCCTTTCCCCCTTCTG-AAGACAGATGCAATTGACAGCGAGGTCTTAA
GGGGTGGTAGATCCA
>Equus_caballus
ATATGAGTAGAAGCAATGTGTGCTATTTC------------TGTTTCAAGG---CTTTTAAGAAG---TAGG---TGAAG
GGGGGCAGAATACGCCACCTCAAA--ATGTGCCACATTGGCACGTG---------GAGCTGAAGACAATCAAGACCCAAC
AGACTCAAGAGAAGCTTTTTACCTCCCTCTTAACAGCTTAAAATAATTTAGAAAGGGGG---TCTGTACCAGGAAGACAG
CTACTACCTGAGATAA-CTGTTTTATCTGAAAGACTTATGTGCATGGCAGGGCAAACATTTATTTACCAA-ACATTTGCT
TTTCTCATCCTT---------------CTTCTCAT---------------------------------------------
------CATCAAAG-GCCTGACTG-----CCTTTGAG--TCACATATTTTTATGGGGCTCCTGTATGTACAAAATTAAAT
--------------TTGTTTT-----------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------TGTCCTG
TTAATCTGTCTTATGTCAACGTAATTATTAGGCCAGCCA--AGAACCTA-TAAAGGTAGAGGAAAAATTATTTTCTCTCC
TCTAAA---CAGG---TATGCGCCCTGCACCTTTCCTTTTCCCTTCTG-AAGCCAGATGCAAATGACAATGAGGGCTTAA
GGGATGGTGGATCCT
>Ceratotherium_simum
ATATGAGTAGAAGTAATATGTGCTATTTC------------TGTTTCGAGG---CTTTTAAGAAG---TAAG---TGAAG
GGGGGCAGAATACACCACCCCAAA--ACGTGTCACATTGGCGTGTG---------GAGCTGAAGGCGATCAAGACCCAGC
AGACTCAGGAGAAGCTTTTTACCTCCCTCTTAACT-CTTAAAATAATTTAGAAATAGGG---TCTGTACCAGGAAGAGAG
CTATTACCAGAGAGAA-CTTTTT-ATCTGAAAGACTCATGTGCATGGCAGGGCAAACATTTACTTACCAA-ACATTTGCT
TTTCTCATCTTCCTGTGAATTGCCTTCCTACTCTTTGAAGCCCCAGACCCCTATCCTTTT--CCCTAGCTCAGGATGGTA
TATAAGCCTCAATT-GTCTGACTG-----CCTTTGAG--TCTCGTATTTTTATGGGGCTCCCATACATACAAAATTAAAT
--------------TTGTTTT-----------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------TGTCCTG
TTAATCTGTCTTATGTCAATTTAATTATTAGACCAGCCA--AGAACCTA-GAAGGGTAGAGGGAAAATTATTTTCTCTCC
TCTAGA---CAGG---TATGCAACCTACACCTTTCCTTTCCCCTTCTG-AAAACAGATGCAAATGACAATGAGGGCTTAC
AGAATAGTGGATCCA
>Myotis_myotis
ATATGAATGGAAGCAATCTGTGCTATTTC------------TGTTCCAAGG---CTTTTAAGAAT---CAGG---TGAAG
GGGGA-GGAACATACCACCTCAAA---GGTGCCACTTTGGCATGTG---------GAGATAAAGGCAATCAAGCCCCAGA
AGATTCAGGAAAGGATTTTTACCTTC-CCTTCATTGCCTGAAAGAATTTAGAAAGGGGCCTGCCTGTACCAGAAAGAGGG
CTATTGTCAGAGAAAACCCTTTTCACCTGCAAGATGGATCTGCCTGGCAGGGCAAACATTTCTTTACCAA-ACATTTGCT
CTCCTCACTTTCCTGTGAATCGTCTCCCTCCCCTTGGCAATCCCAGGTCCCTATCCTTTT--CCTTAGCTCAGGTAGTTT
TATAAACCTCAATT-GCCTG----------CTTTGAG--TCTCATCTTTTTATGGGGCTCTCATATGTATGAAATTAAAT
----------------GTTTT-----------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------TCTCCTG
TTAATTTGTTGTATATCCATTTAATTATTAGACTAACCA--AGAACCTAGGAAGGGTAGAGGGAAAATTATTTCCTCTCC
CCTACA---CAAG---TATGTCTCCTGCACCTTTCTGTTCTCCTTCTG-AAAACAGATCCA-ATGACAATGAGACCCTAA
GCGATGGTGGATCCA
>Rousettus_aegyptiacus
ATATGAGGGGAAGCAATATGTGCTATTTC------------TGTTCCAAGG---CTTTGAAGAAG---CAGG---CAATG
GAGAAAAGAACATGCCACCTCCAAA-ATGTGCTACTTT-GCATGTG---------GAGCTAAAGACAATCAAGACTCAGC
GGACTCACAAAAGGCTTTAAATCTTCCCCTTAACTCCCTAAATGAATTAGGAAAGGAGT---TTTGTACCAGGAACAAAG
CTATTACTAGAGTTAA-CTTTTTCATCTGAAAGGCTTATCTGCATAGCAGGGCAAACATTTATTTACCAA-ATATTTTCT
CTTCTCATCTTCCTGTGAATTGTCTCCTTCCCCTTTTAAGCCCCAGACTCCTGTCCCTTT--TCTTAGTTCAGAATGGTA
CATAAACCTCAATT-GCCTGACTG-----CTTTTGGG--TCTCATATTTTTACGGGACTCCTGTATGTATGAAATTAAAT
--------------TTGTTTT-----------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------TCTCTTG
TTAATTTGTTTTATATAAATTTAAT----AGACCAACCG--AGAACCTA-GAATGGTTGAGGAAAA-TTATTTTTCCTTC
CCTACA---CAAG---TATGTTCCTTGCACCTTTCCTTTTCCCTTCTG-A--ACAGACACAAATGACAATGAGCCCTTAA
GCAATGGTGGATCCA
>Condylura_cristata
ATATGAGTGTAAGTGGAATGCACTAATTC------------TGTTCCAAGG---CTTTTAAG------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----TGGTGGCCCCA
>Sorex_araneus
AAATGTGTGAAAGTAGTACGCATTACATC------------TGTCCTAAAG---CTTT-AAGAGG---CAGG--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------TGTTTTCCTTGTACTTTTTATTCCCCCTTCCCAAAGGTAGATGAGAACAACAATCGGG--TTAA
TAAGTAGTGGGTCCA
>Homo_sapiens
ATGTGAGTGAAACTGATATGTGCTATTTC------------TGTTTCAAAG---CTTTTAAGAAG---CAGG--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------CATGCAATATGCTCCATCCCCTTCCCCTTTTGTAAAATAGATCCAAATGA---TGAGGTCTTAA
GGGATGGTGGATCCA



Dog22_LTR

>MER57LA
--------------------------------------------------------------------------------
-----------------------------TGTGTTAAAAGATAAACTGAGGCATATTAAAAATTTTAAGAGTTTATTTGA
GCAAAAATCGATTCAAATCAGGCAGCACCAAACCAGGAAGTGGTTAGGAGCGCTCCACCGACAGGAGC-TAGGGGA-AAG
ACTTTT---ATAGAGAAGAGGCAGAAG---------------------------------------------------CA
AAGCAAGGAAATTATTTGATTGGCTATAGCTTAAGCAGTTGCCTTATTTGGGAAAGCCTAGTTGGCT-----GTTTGTGA
TTGGTTGTCCTTAGGTTTTGATTTCTTAACCTTGAGGCATTTACAGGCTTAGGTTTTGGTTTGCTTACGTAGGCTGCTAA
GGCATTAGAACCACCTCAGTCTAATGGCCTCCTTGTTTAATTAATTT-AACA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------
>Canis_familiaris
TAACAACTT----TTCATCCATCTTCTGAAGCACTTTTG--CTT----------TAAAAATGCTGCTTTCA---------
--TAAACCACGTGGAGAG---CAGCT-----TGTACAAATACCAACTGAGGCATATGACAAACGTTAAGAGTGTATTTGA
GCAAAAGTTCATTCAAATGGGAACACACAAAACCAG-AAGTGGTTAGGAGCAATCCATTAACAGGTGT-TGGGGAAAGTG
ACCCGGGAGAGAGAGAAAAGGAGGAAG-----------------------------------------------------
TAGTTAGGAAACTATT-GATTAGCCATGGCTTAC--------------------AGCTTTGTCGGCC-----CCTTATGA
CTGGTTGTCCTCGGGTGTCAATTTCA---CCTTGAGGCATTTACCGGCTTAAGATATGGTTTG-TGATGTAGGCTGCCAT
GAGATTAGAGCCACCTGAGTCTAACAGCTTCCTTGTTTAATTAATTT-AATT---GTAG---GTTAGTAGACAACTAGGT
C--TATCAATAAATGA----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AT
CTGCATATTGTCTGGCTTTTTATT
>Felis_catus
TAACAAATT----TTTATCCCATTTCCGAAGTACTTTTG--TTT----------GAAAGATGCTGCTTTCA---------
--TACAATAC----GTAG---ATAG------TGTTCAAATATCAACCAACG-----------CCTAAAGAGTTTATTGGA
GCGAAAGTCCATTCTGATGGGGATACACCAAACCAG-AAGTGGTTACGAACAGTCCATTAACAGC----TGGAGA--GAC
ACTTTG---GTATAGAAAAGGAGGAAG---------------------------------------------------CA
AAGTAAGGAAATCATT-GACTGGCTACAGCTTAA--------------------AGCCTGGTTAGCT-----GCTTGTGA
CTCGTGGTCCTCAGGTTCCAATTTCATAACTTCGAGGCATTTACAGGCTTA-------------TGATGTAGGCCGCCAG
GACAGAAGAGTCACCTCAGTCTAATGGCCTCCTTGTTTAATTAACTT-AA------GAG---GTTAGTGGCTAACTAGGT
C--CATCGACAAATGA----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AT
CTGGACATTGTCTGGCTTTTTATT
>Sus_scrofa
TAACCATTT----TTAAGCCAATTTCTGAAGCATTTTTGTTTTTTTTTTTTTTTTAAAAATGCTGCCTTCT---------
--TACTCTTGGTAGGTAA---CTAG------TGTTCAAAGATAAACTAAAGCAGAGAAAAA-------GAGTTTCTTTGA
TCAAAAATCAACTCAAACGGGGCAGCACAAAACAGG-AA------------CAACCAGTGGAAGAGTC-TGGAGA--GAG
ACTTT----ATAGAGAAAAAGTGAAAGCAAAGTAAGGACTTTGTTTTGTTTTGTTTTCTCAGGCTGCACCTGCAACAACA
AAGTAAGGAAATTATT-GATAGGTTGTAGATTGA--------------------AGCCTAGCTGGCT-----GCCTATGC
TTGGTTGTCCTTAGGTGTTAATTCCACAACCTTGAGGCATTTACAGGCTTAGGTTTTGGTTTG-TTACACAAGCC-CTGG
GGCAGTAAAGCCACCTCCATCTCATGGCCTCCTTGTTTAATGAATAT-GACA---GTAG---ATTAGTAAATAAGAAGGT
C--CACTGACAAATAT----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AT
CTGGGTATGGTCTGGCTCTTCCTT
>Bos_taurus
AAAAAGTTT----TTT---------------------TTTTTTT----------TAAAGTTGCTTCT-------------
--TATACTAGGTGAGTGG---GTAG------TGTTCAAAGATAAACTGAAGCATTAAAAAAATTTTAAGAGTTTATTTAA
TCAAGAGTCAACTCATATAGGACGAT--------------------------ATTTACTGGCAGGAGC-TGAGGA--GAG
ACTTTC---ATAGAGAAAAAGTAGAAA---------------------------------------------------CA
AAATAAGGAGATTACT-GATTGG-------TTGA--------------------AGCCCAGCAAGTT-----GTTTGTGA
TTGGTTGGTGTTAGGTGTCAATTTCATAACCCTGAGGCATGTGCAGGTTTGGCTTTGGGTTCG-CTACACAGGCCACTAG
GGCATCAGCGCCACCTCAGTCTCATGGCCTCCTTGTTTAATTAACAT-GACA---GTTG---CGTAGTGGGTAAGTAGGT
C--CATGAATAAGTGAA---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AT
TTGGGTATGATCTGGTTCTTTATT
>Equus_caballus
TAACAACTT----TTCATCCAATTTCTGAAGCATTTTTG--TTT----------AAAAAATGCT---TTCT---------
--CACACTAGGTGGATAG---GTAA------TGTTCAAAGGGAAACTGAGGCATCTTAAAAATGTTAAGAGTTTGTTTGT
GCAAAAGTCCACTAGAATGGGGCAGCGCCAAATCGG-AAGCGCTGAGGAGGGATCCACTGACAGGAGCGCAAGGA--GAG
ACTTTT---ATAGAGAAAAGCAG-------------------------------------------------------CA
AAGTAAGGAAATTACT-GATTGGCTGTAGCTCAA--------------------GGCCTAGTTGGCT-----GTTTGTGA
TTGGTTGTCCTCAGGTTTCGATTTCATAACCTTGAGGCATTTACAGGCTTAGATTTTGGTTTG-TTATGTAGGTCACTAG
GGCATTAGAACCCCCTCAGTCTAATGGCCTCCTGATTTAATTAATTT-AACA---GTAG---ATTAGTGCACAAGTAGGT
C--TGTCAAAAAATGA----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AT
CTTGATATTGTCTGGCTTTTTGTT
>Ceratotherium_simum
TAACAACTT----TTTATGCAACATCTGAAGCATTTTTG--TTT----------AAAACATGCTGCTTTCT---------
--TACAATAAGTGGATAG---GTAG------TGTTAAAAGGTAAACTGAGGCATATTAAAAATGTTATGAGTTTATTCGA
GCAAAAGTCCATTTGAATGGGGCAGCACCAGACGGG-AAGTGGTTAGGAGCCATTCACCAACAGGAGCTCAGGGA--GAG
ACTTTT---ACAGAGGAAAGAAG-------------------------------------------------------CA
AAGGAAGGAAATGATT-GATTGCCTGTAGCTCAA--------------------AGCCTAGTTGGCT-----GTTTGTGA
CTGGTCGTCCTTAGGTTTCGATTTCATAACCTTGAGGCATTTACAGGCTTCGATTTTGGTTTG-TTACATAGGCCCCCAC
GGCATTCAAGCCCCCTCAGTCTAATGGCCTCCTCATTTAATTAATTT-AACA---GTAG---ATTAGCAGATAAGTAGGT
C--CATCAACAAATGA----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AT
CTGGATATTGTCTGGCTTTTTATT
>Myotis_myotis
TAATCATAT----TTTAGCCAAAATTGGAAGCATTTCTG--TTT----------TTAAAATGCTGCTTTCT---------
--CACACACGGTGGATAG---GTAG------TGTTCAAAGATAGACTGAAGCGTGTTCGAAATGTTAAGGGTTTGTTTGA
GCAAAGGTAAATTTGAACAGGTCAGCACCAAACCGA-AAACAGTTACCAACAATCCACCCACAGAAGC-TGGGGA--GAG
ACTTCT---ATAGAGAAAAAACGGAGG---------------------------------------------------CA
AAGTCAGGAAA------------------CGTAA--------------------AGGCTGGTTGGCCTTCAGGTTTGTGA
CTGGTTGTCCTTTG--------TTTGTAACCTTGAGGCATTTACAGGCTTTGGTTTGGGT-TG-GTCCATAGGCTGCCAA
GGCATTAGAGCCACCTCAGTCTCATGGCCTCCTTGTTTAATCCACAG-TA-------AG---ATTAGTGGATAAGGAAGT
C--CGTGGGCAAGTGA----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AA
ATGGATAATGTCTGGCTTTTCATT
>Rousettus_aegyptiacus
TAGCAATTC----TGTATCCAATTTCTGAAGCGTTTTTT--TTT----------AA----TGCTGCTTTCT---------
--CATACTAG----ATAG---ATAA------AATTCAAAGATAAACTGAGGCTTATTAAAAATGA---------ATTTAA
GCAAAAGTTGACTCAAGTGAGGCAGTACCAAACCAG-AAGTGGTTAG-AGCAATCCATCAACCGACAC-TGGTGA--GAG
ACTT-----ATAGAGAAAAGGTGGACG---------------------------------------------------CA
AAGTAAGGAAACTGTT-GATTGGCTATAGCTTAA--------------------AGCCTAGTTGGCT-----ATTTGACA
TTGGTTATCCTTAGGCCTAGATTTCATAACCTGGAGGCATTTATAGGATTAGATTTTAGTTTG-GTATATAGGCTGCCAA
AACATTAGAGCCACCTTAGTCTAATGGCCTTCTTATTTAATTAATTTTAACA---GTGG---ACAAGTGGATAAGTAAAT
C--CAGTGACAAGTGA----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AT
CTGAATATTGTCTGGCTTATTATT
>Condylura_cristata
AAACTACTTTTTATTTATCCAATTTCGGAAGCATTTTTG--TTT----------AAAATGTGCAGCTTTCT---------
--TACACTCAGTGAATAG--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------GCAG---ACAAGCCA----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AT
CTGGATATTGTGCTGCATTCTGTT
>Erinaceus_europaeus
ACAAAACTT----TGTAGACAATTTCCTGAGCACTTTG---TTT----------AAA---CCATGCTTTAAACAAAGCAT
GGTAGACTAGGCAGACAG--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------TCATAG---ACTAGTGAATGAGTGGGT
TCACATTGACAGATCAATCTGTATTTATTTTTGCATTCATTTTTAAAGATTTTATTTATTTGAGGGGAAGAGAGAACCAG
GGTGTCACTATGGCACACACATTGCCAGGAATTGAACTCTGGACCTCATGCTTAAGAGTCTAATACATTTATCCACTGAG
CCACCTCCCAGGTTTCA---------------------------------------------------------------
------------------------------------------------------------------------------AC
CTGGACACTGTGTAAAATTTTGTT
>Homo_sapiens
TAACAAGTT----TTTAAGCAATTCCAGAAACTTTTTTA--TTT----------AAAAA---------------------
------CTCTATGGCTAG--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------GTAG---AACAGTAGATAAGCAGGT
C--CACAGATAAATCAATCAGAGAAAAAAAAATCTTCCTTTAGAGGAGGTACATGAAACAGAAAACCCTCCCCATGACGA
GATGCAACCATGATTCCCTAGGGAGATGAATGGGACCGCTCAGGACCATTCCCATTTGTCCATCTTCACTCCCCAAATGG
ACCAGTGACCCCTACTGGATTGTGACAGCTGTGGGCAAAACCCTCCTCCAATTCATGCTCATCATTAAGTAGGAAACTCC
ATCGTGGAGGGAGGCACAAAGCTGTTTAGACCCTGGAATTTCACCTAAGGCATAGAGATGCACACATCGCAGATGACCAC
ATGGATACTGTCTGCATTTTGATT



Dog23_LTR

>LTR10_EC
-----------------------------------------------------------TGTCGAGAG-TTTAGCTAAGC
TACTCCATGGTATTGCTGCCTCGGCATCCA----------TTTTGTTTGGCCAAGCGGCCTGCGGGGACCTTAAACTGAC
ACTAG-CCCCTCATGCAAGCGCATGCCCTAGATAGCAGCCCGCAGAGTCACA-AGCAAATG-TAAGTTCCTGATATGACT
TCCCCAACAGCCCTTGTGATCAACAGTCTCCCCCGCCTCCCAGGGCCTTCC--CCTTGTGCGCCCCTTAGATAAGACCCC
CG----TGGAGCTTACCAAAACCCCGCTCTTTTTGGTTTGAATTGACCAATCCGGCCTTAGCCCGGGAACCCCAAAGCAC
TCCACCCACGGACCCTAA-------TAAAGGCATGTGCCCCAGGTCCTGCCTCTCTCTCTGCCTGCACCCTGCCT----T
GACCTCCCTATGTGGCCCCTCGAGGCGTGCCGTGTACTTCCTCCAGGACC-------TGTGAGTAATAAACTTCTCTATT
TCAATTTCTCTTGTGGTCTGTTGTTGAACCGCGGCTCACCATCC-----GGCACCCTGTGCTCCACTTAACAAATGTTAA
TTTAACAAAGTCATAACA--------------------------------------------------------------
-----
>Canis_familiaris
GCCAGGGACTCCTACAAATATCTAAAATTCAGTG-TCAGC-AAAAATA---TAAGA---TTTCAAGAG-TTTATCTAAGC
TATTCTATGGTATTGTTGCCTTGGCATTCA----------TTTTGTGCAGCCAAGCAGCCTGTATGGACCTTAAACTGAC
AGTAG-CCCTTCATGAAAGCTCCCATCCTAAATGGCAG-CCACAGAGCCACA-AGAAAATG-CAAGTCATTGATACGACT
T-CCCAATAGCTTTTTGG--TAATAATCTCTCCTGCCTCCCA-TACCTATATGCCTCCTGTACTTCTTGGATAAAACCCC
TG----TGGGACTTACCAAAGTCCTCTTC-TTTTAGTTTGAGTTGACCAATTTGGCCCCAGCCTGGGAACCCCAAAGCAC
TCTACACATGGATCCTAA--------AAAGA-AAGTGCCCCTGGTCCTGTCCCTCTCTCTGCCTGCACCATGTCT----T
GACTTCTCCAAATAGCACCTTGTGGTGCTTCCTCTACCTCCTCTAACACC-------TGTGAGTGATAGTCTTCTCTATT
TCAATTTCTCTTGTGGTCTTTTGCTGAACTGTGGCTCACCATAC-----AGTAGCCTGTACTGTAGTTTACACATGTTAA
TTTAACAGTGTCATAATA---TAAGT---TTATAAACTCAGAAAAGTGATGAAACAATTGAAGAGGAAACTAAAATACAG
GGAAA
>Felis_catus
GCAGGGGACTCATACAAATATCTAAAATGCATT--TCAGC-AAAAATA---TAAAA---TGCCAAGAG-TTGAGCTAACC
TACTCCATGGTATTGCTGCTTTGGCATCCA----------TTTTGTGCAGCCAAGCAGCCTGTGGGGACCTTAAGCTGAC
AGCAG-CCCTTCATGCAAGTTCATGTCCTGGATGGCAG-CCACAGAGCCACA-AGAAAATG-CAGGTTCCTGATAGGACT
C-CCCAACAGCC-TTGTAATCAACAGTCTCTCCTGCCTCCCAGCACATCTGTGCCTTCTGCACTCCTTGGATAAAACCCC
TG----TGGGACTTACCATAACCCTGCT--TTTTGGTCTGAGTTGACCAATTTGGACCTAGCCTGGGAACAAGAGAGCCC
TCTACACACAGACCTTAA-------TAAAGG-AAGTGCCCCAGGTCCTGTCACTCTCTCTGCCTGCACCTTGCCC----T
GACCTCTCCACATGGCACCTTGTGGTGCTCCCTCTACCTCCTCTAAGACC-------TGTGACTATTAGACTTCTCTATT
TCAATTTCTCTTGTGG-CTTTCATTGAACCATGATTCACCATCCAGTAGAGTAGCTTGTACTCTAGTTATCACATGTTAA
TTTAACAATGTCATAACA---TAAGG---TCATAAACTCAGAAAAGTGAAGGCGG-AGGGAAGAGGAAGCTAAGATACAC
AAAAA
>Sus_scrofa
GGCAGGGACT--TGTAAATATCTAAAATGCAGTA-TCAAC-AAAAATA---TAAAG---TGGTGAGAGTTTTATCTAAGC
TATTC-ATGGTATTGCTGCACTGGCATCCC----------TTTTGTGTGGCCAAGTGTCCCGCAGAGACCTTAAACAGAT
ACTAGTCCCTTCATACAGAGGTATTCCTTAGACAACA----------------AACAAACA-TAAGTCCCTGATATGACT
TCCCCAACAGTGCTTGTGATCAACACTCTCCCTCGCCTCCCGGCACCCATATGCCTTATGCATCTCTTGTATAAGACCTC
CA----TGGGTTTTTCCAAAACC-TACTC-TCTTGTTTTGAATTGGCCACTCTGACCCTAGCCTGGGAACCCCAAAGCAC
TCTAACTACAGATGCTAA-------GACAACTAAGTGCCCTAGGTCCTGCCATTCTCTCTGCCTGCACCCTGCCT----T
GACCTCTCCAAATGGCCCCTTGAGGAGTGCCAAGCACCTCCTCCAGGACC-------TGGGACTAATAAACTTCTCTGTT
TCAGTTTCTCT-GTGGCCTTTAGCGGAAT--AGGTTCACCATCT-----GGCACCCTCTGTTCCACTTAACAAATGTGA-
----ACAAAATCACATTC---TGAGC----CATAAACCCAGAAAAGTGAAGAC--------AGAGGAACATAAGGTACAC
AGAAA
>Tursiops_truncatus
GGCATGGACT--TATAAATATCTAAAATGCAGTATTCAGCAAAAAATA---TAAGG---TGTAGATAG-TTTAGCTAAGC
TACTCCATGGTACTGGTGCCT-GGCATCCA----------TTTTGTGTGTCCAAGTGTCCTGTAGAGACTTTAAACCGAC
ACTAGACCCTTCATGCAAGAGTATTGCTTAGGTAACAG-CTACAGAGTCACA-AGCAAATGTTAAGTCCCTGATTTGACT
TCCCCAACAGCCCTTGAGATCAACATTCTCTCTTGCCTCCCAGCACCTGTATGCCTTTCACGGCCCTTGGATAAGAACCC
CA----AGGGACTTAGGAAAACCACACTC-TTTTGTTTTGAATTGACCAATTGGACCCTAGCCCAGGAACCCCAAAGCAC
TCTAGCTACAGATGCTAA-------TAAAAGCAAGTGCACCAGGTCCTGTCACTCTCTCTGCCTGCACCCTGCCT----T
GACCTCTCCAAATAGCCCCTTGAGGTGTGCTTAATACCTCCTCTGGGACC-------TGTGAGTAATAAACTTCTCTATT
TCAATTTCTCTTTTGGTCTTTTGTTGAAC--AGATTCACCATCT-----GGCACCCTGTGCTCCACTTAACAAATGTTA-
----ACGAAGTCAGAAGA---TGACG---TTATAAACTCAGAAAAGTGAAGACAG-GGGAAAGGGGAACTTAAGGTACCC
AGAAA
>Equus_caballus
GGCAGGGAGTCACATAAATATCTAAACTGCAGTA-TCAGC-AAAAATA---TAGGA---TGTTAGCAG-TTTAGCTAAGC
TACTCCATGGTATTGCTGCCGCGGCGTCCA----------TTTTGTGTGGCCAAGTGGTCTGCAGGGACCTTGAACTGAC
TCTGG-GCCCTCATGCAAGCACACGCCCTAGATAGCAGCCTGCAGAGTCACATAGCAAATG-TAGGTTCCTGACATGACT
TCCCCCACAGCCCCTGGGATTAACAGTCTC-CCTGCTTCCCGGCACCTGTATGCCTCATGTGCCCCTTCAACAAGATCCC
CC----TTGGACTTGTCAAAACTTAGCTA-TTTTGGTTTGAATTGACCAATCTGTCCCCAGCCTGAGAAACCCAAAACAC
TCTATCCATGAACCCTAA-------TAAGGG-AAGTGTCCCAAGTCCTGTCACTCGCTCTGCCTGCA-CCTGCCTCGGGT
GACCTCCCTGATTGGCTCCTTGAGGTATGCGCTGTACCTTCTCCAGGAGC-------TGTGAATAATAAACGTCTTTATT
TCAGTTTCTTTTGTGATCTTTTGTTGAACTGTGGCTCACCACAG-----GGTAGCCTGTGTGTCATTTAAAAAATGTTAA
TTTAACAAAGTCATGACA---TAAGG---TTATAGACACAGAAAAGTGAAAATGG-GGAAAAGCAGAACCTAAGGTACTT
AGAAA
>Ceratotherium_simum
GGAAAGGATTCATATAAATATCTAAAATGCAGTA-TCAGC-AAAAATA---TAAGA---TGTTGGGAG-TTTAGCTAACC
TACTCCATGGTATTGTTGCCTAGGCATCCA----------TTTTGTGTGGCTAAGTGGTCTACAGGGGCCTTGAACTGAC
ACCAG-CTCCTTCTGCAAGCCCATGCCCTAGACAGCAGCCTGCAGAGTCACACAGCAAATG-TAAGTTCCTGATATGATT
T---------CCATTGTGATC-ATAGCCTCTCCTCTCTCCCAGCACCTGTATGCCTTATACACCCCTTAGATAAGACCCC
CG----TGGGACTTACCCAAACCCAGCTC-TCTTGGTTTGAATTGACCAATCTGGCCCTAGCCTGAGAAGTCCAAAGTGC
TCTACCCATGAACCCTAA-------TAAAGA-AAGTGCCCCAAGTCCTGTCACTCTCTCTGCCTGCA-CTT--------T
GACCTCCCCAAATGGCCCCTTGAGGTGTGCCCTGTACCTTCCCCA-GATC-------TGTGAGTAATAAACTTCTCTATT
TCAATTTATCTTATGATCTTTTGTTGAACTGTGGCTCACCATCT-----GGCAGCCTGTGCACCACTTAAAAAACGTCAA
TTTAACAAAGTCATAACA---TGAGG---TTATAAACACAGAAAAGCAAAGACAGAGGGGAAGGGGAACCTAAGGTACAC
AGAAA
>Myotis_myotis
GGAAAGGGCTCATAAAATTATCTAAAATTTAGTG-TCAGC-AAAAATA---TGATT---CATCATGAG-TTTAGCTAAGC
TTTTGCATGGTATTGTTAACTCAGCATCCTTTTTTTTTTTTTTTTTTTAATCAGAAGGCTTCCAGGGACCTTAAATTGAC
ACTAG-CCCCTTATACAAACACATGCCCTAGATAACAG--CACAGAGTTTA--GGCAAATG-TAAGTTCCTGTCAAGATT
C-CCCAACAACCTCTGTGATCAATA-------------------------------------------------------
------TGGGGCTAACAGAAACCCTTCTC-TTTAGGTTTGAATTGACCACTCCTGCCTTAGTCTGGGAACTGCAAAGCAC
TCCATCCACAGACTCTGA-------GAAAGGCATATGCCCCGGGTCCTGCCTTTCTCTCTGCCTGCA--CTGTCT----T
GACCTCCCCAAGTGGCCTC-AGAGCTGTGCCCTATACCACTTTCAGGACCTATGAATTGTGAGTAATAAACTTCTCTATT
TCAATTTCTCTGGTTGTCTGTTGTAGAAC--TGGCTCACCATCT-----AGTACCCTGCTATCCACTTAACAAAAGTTAA
CTTAACAAAGTCATAATG---TAAGT---CTATAAATTCAAAAAAGAGGAGATAG-ATGAAAGGGGAACCCAAGGTACAC
AGAAG
>Rousettus_aegyptiacus
GGAA--GACCCACACAAATATGTACAATGCAATA-TCAGT-AAAAATA---TAAGA---TGATGAGTG-ATTAGCTATGC
TATTCCATGTTACTGCTGCCTTGGCATCTA----------TTTTGTTTCACCAAGAGACCTACAGGGACCTTAAATTGCC
ACCAG-CTCCTCATGCAAGCACATGCCCTAGGTAACAGCCCACAGAGTCACA-AGCAAATC-TAAGTCCCTGATATGACT
TCCCCAACAGCTCTTGTGATGAATAGTCTCTCCTGAATCCCAGCACCTGTATGCCTTAGGCACTCTTTAGATAAGAACTG
CCTCCATGTAGTTAACAAAACCCC-GCTC-TTTTGGTTTGAATTGACCACTCCTGCCCTAGCCTGAAAACCTC-------
---ACCCACAGACCATAATAAAGGCTAAAGGCGAGTGCCCCAGATCCTACCTCTCTCTTTGCC-----------------
------------TCACACATTGGAGAGTTCCCTGTATCCTCTCCAGGACCTATGAACTGTGGATAATGAACTTCTCTGTT
TTAATTTCTCTTGTGGTTTGTTGTTGAAC--TGGCTCACCATCT-----AGCACCCTGTGATCTACTTAA-AATGACTAA
TTTAATAAAGGCATAACA---TAACA---TTATAAACTCACAAATGGGAAGATAA-GGGAAAAAGAAACATATAGTACAC
AGAAA
>Condylura_cristata
GACGGGAACT--CAAAAATGTCTAAAATGTT----TCTGCAAAAATTG---TAAGG------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------TTATGAATGAAGAAAAGTTAAGACAATGGGGAAGAGGAATTTAAAATACAC
AGCAG
>Erinaceus_europaeus
GAAGTGGAC--ACATGAGTATCTAAGACGCTATG-TCTGC--ATCTCA---TGGGG------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------TCATAAGTCAAGAGCAGCTA-GACAT---------GGAA---GAGACAAAC
AGAAT
>Homo_sapiens
GGAGAGGACTCACTCGA---CATGAAAAAAAGTA-TCAGT--AAATTA---TAAGG------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------TTGTAAACTCAGAAAAGTGAAGACAA------AAGGCAGCCCAAGGTACAC
AGAGA



Dog26_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
---------------AGAAAAGGGAACCCTTGTACACT--GTTGGTGGGAATGTAAATTGGTACAGCCATTATGGAAAAC
AGTATGGAGGTTCCTCAAAAAATTAAAAATAGAACTACCATATGATCCAGCAATCCCACTTCTGGGTATATATCCAAA-G
GAAATGAAATCAGTATCTCGAAGAGATATCTGCACTCCCATGTTCATTGCAGCATTATTCACAATAGCCAAGATATGGAA
NCAACCTAAGTGTCCATCGACGGATGAATGGATAAAGAAAATGTGGTATATATACACA-------------ATGGAATAT
TATTCAGCCTTAAAAAAGAAGGAAATCCTGCCATTTGTGACAACATGGATGAACCTGGAGGACATTATGCTAAGTGAAAT
AAGCCAGGCACAGAAAGACAAATACTGCATGATCTCACTTATATGTGGAATCTAAAAAA---------------------
--GTCAAACTCATAGAAGCAGAGAGTAGAATGGTGGTTGCCAGGGGCTGGGGGGTGGGGG---------AAATGGGGAGA
TGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGTACAGCATGGTGACTATAG
TTAATAATACTGTATTGTATACTTGAAATTTGCTAAG---AGAGTAGATCTTAAGTGTTCTCAC--------CACACACA
AAAAAAT---GGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCAC----AATGTATAC
GTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA
------------------------------------------------------------------------------
>Canis_familiaris
CAGCTTTCTCTTCTG-----TGGAATCAGA------AAA-AAACTCTTATTTGTTTGTTTA---------------AAAA
TATTAATGCGTA-----------------TCGTGCACT--GTTGGTGGGAGTGTAAATTGGTGCAGCCACTAAGGCAAAC
AAGATGGAGGTTCCTCAAAGA-TTAAAAATAGAACTACTGTATGATCCATCAATTCCACTTCTGGATATTTATCCAAA-G
AAAATGAAAGCA-TAACTTGAAAAGATATGTGC-TCCCTATGTTCATTGAAGCATTAGTTTTAATAGCCAATATATTGAA
ACACTCTAGGTGTCC------------GTGGATAAAGAAGATG---CACACACACATG-------------ATAGACTAT
TCTTCAACCATAAAAATGAATGAAA--------TTTTCAGCCACATGGATGGACCTTGAAGACATTTTGCTAAGTGAAAT
AAGTCAAATAGAAAAAGACA-ATACTACATGATCTCACTTACATGTGAGATCAAAAAAAAAAAAAAAACCCAAAATTAAA
AAGCCTAACTCAGAG------AAAACAGATCAGTGGTTG--GGAGGAGGAGGGGCAGGTAGAC------AAAATGGGTGT
AGGGAGCCAAAAGGCACAAACTTCCAGGTAT---AAAGAAGTAAATCCTGGGGATCTGATGTACAGCATGGCAACTATGG
TTAATAATGCTGTATTACATACTGGAAAATTCCTAAG---AGAGTAAATCTTAAAAGTTTTCTT--------CACAAGAA
AAAGAATTTTGGC-ACTTTGTATGATGACAG--ATCTTAAGTAAACTTACTGTGGTCACCATTTTGC----AATATATAC
AAGAACAGAATCATTATTTTGTACACCTGAAACTAATATAG-TGTTG-ATGTCAATTATGCCTCAAT---AA--------
---AGAA-TATTAATGTATTT---ATTATTA---TCATATCA-AAGAAATGGTGCTCACCTAGCACCTTTGAGTGGCG
>Felis_catus
CAGCTTTCTCCTCTG-----TAGAATCAGA------AAT----------GATATTTATTTA----TTTATTTT---TAAA
TATTAACCTATC-----------------CTGTGCACT--GTTGGTG-GAATGTAAATTGGATCTGCCACTACAGAAAAC
AGTATGGAAGTTCCTCAGAAA-TGAAAAAGAGAACTACCTTATGATCCAACAACTCCATTTCTAGGTATTTATCCAAA-G
AAAAGAAAAACACTGACTTGAAAAAATATATGC-ATCCCATGTTCATTGAAGCATTAATTATAATAGCCAGTAGATGGAA
ACAACCTAGGCATCCACTGATAGATGAACGGATGAAGAAGATGTGACATATACATATATCATAGATACATGATAGACTAT
TGCCTAACCATAAAAAAGAATGAAA--------TTTGCAACAACATGGATGGACCTTGAAGGCATTTTACTAAG-----T
AAGTCAAACAGAAAAAGACACATACCGTGTGATGTCGCTCATATGTGAAATCTAAAAAACACAAAAAC---------AAA
AAATGTAACTCAGAG------AGAACAGATTGGTGGTTGCCAGAGATTGGGAGGAAGGGCAGGTAGACAAAAATGCGTGT
AGGAGGCTAAAAGGTAAAAACTTCCTGTTAT--AAAATAAATAAATCCTGGGGATCTAATGCACAGCATGGTGACTATAG
TTAACAGTACTGTATTGCATACTGGAAAATTGCTGAG---AGAATAAATCTTAAAAGTTCTCTT--------CATGAGAA
AAAAAGTTTTGGC-ACTTTGTATGACGACAG--ATGTTAACTGAACTCATTGCAGTAATCATTTTAC----AAAATTTAC
AAATATTGAATCATTGTGCTGTACACCTGAAACTAAA-----TGTTTTATGTCAATTATGCCCCGATA--AA--------
---AAAA-TATTAACGTATGT---ATTATTA---TTGCATGA-AAGAAATGGTGCTC-CATTGGACCTTTGAGCACTG
>Manis_javanica
CAGCTTTCTTCTCTG-----TAGAATAGGA------ACC---ACGTT-AATTATTTAATTA-ATTTTTACCTT---AAAA
TA-TAATGTATA-----------------TTGTTCACT--ATTGGTGGGAATGTAAATTGGTGCACCCACTATGGAAAAC
AATATGGAAGGTCCCAAAATA-TTTAAAATAGAACTACCGTATGAATC---------ATGTCTAGGTATTTGTCTGAA-T
AAAATGAAAACACTAACTCAAAAATTTATGTGCACCCCCATGTTCATTACAGCCTGATTTATAATAGCCAAGATATGGGA
ACAAGATAAGTGTCCATTGATGAATGAATAGAT-AAGAAACTGTGGTATATATATACA-------------ATGTAATAT
T---CAGCCATAAAAAAGAATGAAATCTTGCCTTTTGCAACAACACGGATGGACCTTGAGGGCATTATGTTAAATGAAAT
AAGTCAAACAAAGAAAGGCAAATACTGTATGCTCTCACTTATGTGGAGAATTAATAAAAAGAAAAAAC----------CA
CAACAAAACTCACAG----ATAGAGTAGGTTGGTGGT----AGAGGCTGAGAGGG------------------TGAGTGA
AATGAGTGAAAGGGGTCAAGCATCCAGTTAC------AAAATAAGTCATGGGGATGTAACATAAAGCATGGTGACTATAG
GTAATAATAATGTATTGCATATTTGAAAGTTGCTAATAACAGAGTAAATCTTAAATATTCTCATCACACACACACACACA
CACAAATACCTGTGGCCATGTATGGTGATGG--ATGTTAACCAGACTTATTGTGGTGATCATTTTGC----AATATATAA
AAATATTGAGTCACTATGATGTATAACTGAAACTAATATAA-TGTTATATGTCAATTATACATCACTTGAAA--------
---AAAA-AAGTAATGTGTGT---ATTATTT---TTGCATGA-AGGAAATGGTCCTCACCTTGCCCCTGTGAGTGGTG
>Sus_scrofa
CAGCTTTCTTCTTTG-----TGGAATAGGA------AAA---ATGCTAATTTACTTATGTATTTTTTTACTTT---AAAA
TGTTAATGCATA-----------------TTGTGCACT--ATTGTTGAGAATGTAGATTGGTACAGCTACTGGGGAAAAC
AGTGTTGAGTTTCCTCAAAAA-TTAAAAATAGAATTACTAGATGATTCAGCA-----ACTTCTAGGTATTAACACAAACA
AAAATGAAAACACTAACTTGAAAACATATCTGG-TCTCCATGTTCTTAGCAACATTATTTACAATAGCCAAGATTTGGAA
ACAACCTAAGTATTCATTGATAG-TGAATGGATAAAGAACATGTGGTATATACATACA-------------ATGGAATAT
TATTCAGCCATATAAAATAATGAAAGCTTGCCATTTGTGATAACATGAGTGGACCTTGAGGGCATTATGCTAAGTGAAAT
AAGTCAAACAGATAAAGACAAATACTATATGATCTAACTTATAAGAGGAATCTTAAAAAAAAAA--------------CC
AAAACACCCTCATAG----ATAGAACAGATTGATTGTTGCCAGAGATAGAGAGGGATG----------------GAATGA
AGGGCGTCAAAAGGCACAAACTTCCAGTTAT--AAAATAAAGAAGTCATGGGAATGCAATGTATAGCATGGCGACTATAG
TTAA---TTCTGTACTGCATATTTGAAAGCTGCTAAG---AGAGTAAATCTTAAAAGTTCTCAT--------CACAAGAA
AAAAAATTT--GTAACTATATATGATGACAG--ATGTTGAATAGATTTGCTGTAGTGAT---TTTGCAATAAATATTTAC
AAATACCAAAT-ATTATGTAGTATACCCAAAATTAAGATAA-TGCTATATGTCATTTATACCTCAATTT--A--------
---AAAA--ATTAATGCATTT---ATTATTA---TTGCATCA-AAGAAATGGTGGTCACCTTTCACCTCTGAGTGGTG
>Vicugna_pacos
CAGCCTTCTTCTCTG-----TGGAATAGGA------AAA----TGCTAGCTTATTTATTTATTTTTTTACTTT---AAAA
TATTAATGTTGA-----------------TTGTGCAGTTTGTGGGTGGGTTTGTAAATTGGTGTAGCCACTATGGAAAAC
AGTACAGAGGGTCCTGAAAAG-TCAAAAATAGAGCCACTATATGATCCAGCAATTCCACTTCTGGGTAGTTATGTGAA-G
AAAATGAAAACACTAACTC-AAAAGATGCATATGCCCCCATGTTCACTGCAGCATTACCTACAACAGCCAAGAAATGGAA
ACAATCTAAGTATCCATTGGTAGATGAATGGATAAAGAAAATGTGGTATATATAGACA-------------ATGGAATAT
TATTCAGCCATAAAAAAGAATGGGAGCTGGCCATTTGTGATAACACGGATGGAACTTGAGGGCATTATGCTGAGTGAAAT
AAGTCAGACAGAGAAAGACAAATAGTGTATGATCTCACTCATAGGAGGAACCTTAAAAAAGA------------------
------CCCTCATAC----ACAGAACAGATTGGTGGTAGCTAGAGGTGGGGAGGGATG------------AGATGGGTGA
AGGGGGTCAAAAGATACAAATGTCCAGTTAT--AAAATAAGTAAGTCATGGGGATGCAATGTACAGCATGGTGACTATAG
TTAA---TACTGTACTGTTCATTTGAAAGTTGCCAAG---AGAGTAAATCTTAAAAGTTCTCAT--------CAGAAGAA
AAAATTCTTTGTTAACTATGTATAGTGACAG--ATGTTGACTAGATTTATTGTG---ATCAATTTGCAATAAATATAAAC
AAATATTGAATCAGTATGTAGTATATACAAAACTAACATAG-TGCTATGTGTCAATTATACTTCAATT------------
---AAAA--ATTAATATATTT---ATTATTA---TTGCATCC-AAGAAATGGTGCTCTCCTTGCACCTCTGAGTGGTG
>Equus_caballus
CAGATTTCTTCTCTGTGGAATGGAATAGGA------AAA-------------ATTTATTTA-TTTTTTACTTT-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---AAGA-TACTAATATGTTT---ATTATTG---CTGCATTG-AAGAAATCGTGC-----------------------
>Ceratotherium_simum
CAGCTTTCTCCTCTG-----TGGAACAGCA------AAA---------ATTTATTTATTTA-GTTTTTACTTT-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---AAGA-TATTAATATGTTT---ATTATTA---TTGCATCA-AAGAAACAGTGC-----------------------
>Myotis_myotis
CAGCATTCTCCTCTG-----TGAAAAAGGA------AAA---ACACTAATTTATTTATTAG--TTTTCACTTT-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---AAGA-TATTAATGTGTTT---ATTATTATTATTGCACCA-CAGATATGGAGCTCACCTTGCACCTCTGAATGCTG
>Rousettus_aegyptiacus
TAGCTCACTCCTCTG-----TGGAATAGAA------AAA---ACACTCATTTATTTATTTA-GTTTTCACTTT-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---AAGA-TATTAATGTATTT---ATTATTG---TTGCATCC-AAGAAATGGTGCTTACCTTGTACCTTGGAGTGATG
>Condylura_cristata
CAACTCTCGCCTCTG-----CGGAGCAGGC------AAATATTCATTCATTCATTCATTCATTCATTTATCTT-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---ACAATTATGAATGTGTTT---CTTATCA---TTTTATCAAAAGAAATGGTACCCACCTTACAAGTTGGAGTGCTA
>Uropsilus_gracilis
CAG-TTTCTCCTTGATAGAATGGAGAAGAATCAAACAAATATTCATTCATTAATTCATTGATGCATTCATTTA-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----TCA-TATATATGTATTT---ACTACCT---TTGCATCA-AAGACATGTCATCACCCTTGCAGCTTGGAGTGGTA
>Homo_sapiens
CAGCTTTCTTCTCTA-----TGGAATAGGA------ATA-----------ATATTTATTCA-TTTTTTACTTT-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---AAAA-TGTTCATGTTTTT---ATTACTA---TTGCATC---AAAAAAGATGCTTATCTTGCACTTTACAGTGTGG



Dog27_LTR

>CARERVR1_LTR
-------------------------------------------------------------TGTTGGGGAAGGTCATCGA
GAAGACGTGACCGCCGGTTGACCCGTGAGCTGGACCCGGGCAATCAGAGGCTCCTCACCCCCTCCCCTGTCCTTGGA-AT
GTGGGTTCCGCTTGCCTTCCCCGCTCCCAGAGGCTGCTCCAAGGACACAGCCTTGAGATAGTGATGTGGTGTTGAGAACA
CCTGNACGGTATACGTGACTGAACCCAGTTAAGGCCTCTATAT------AAACTTTTAAGA-TTTGGCGGGCGGGTGCGG
AGATCTACTCGTCTTGCTGCCGCC----CAAGACAAGCCTCGT-ATGTAAGTTCCCTTTGCTTATTAAANCTGCCACCTA
CCAACCTGGAGTGGCCTGCCTCTTTCTTCGGTCT---------------------CTCCCTGCCCTCTGCGTACGGGGGC
CGGTTTCAGATTACACC-CGGGAAGCTCCCGAGGGGGTTGCGAACCAACA------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----
>Canis_familiaris
CACAAGTGCTTGGGATTTTGATTTTTGGCTGGTTTGAATATTTAATTTGC---ATGAG---TGTTGTAAG---TCAT-GA
GAAGATATGACTGCTGGTTGATCTGGCACCTGGCCT----------GGGGCTCCTCACCCTCTACCCTGTCCTTGAA-GT
GTACATTCTGCCCACCATTCCCATACTAGGA-GGTGTTTCGAGGACATAGTTTTGAGAGAGCAGTGTGTTATTGAGACCA
TCTTGACTGAATATGTGAGCAAACCCCATTAAAGCCTCTGTAT------CAGCTTTTAAGATTTTGACA----AGTGAGG
AGATCTACTCATCTTGTGGCTGCC----AAAGACAAG-CTCCT-GTGTAAGTTCTT-TTGTTTCTTTAACCTGCCA----
-----------------GTTTCTTTCTTTGGTTT---------------------CTCCTTGATCTCCATGTACTGGGGC
TAGTTTCAGATTTTACC-TGGGGAATTCTCAGGA---TTGTCAACTAACA---ATGA-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------G---TGTATATAT--------TTTTCAGTGTATAATAAGTTGGTGGTTAAAATTATTCTA
A-GAA
>Felis_catus
CGAAAGTGTTTAGGAGTTTGATCTTTGGTTCTTTTGAATATTTAATCTGC---ATGAG---TGTTGTAGGAGGTCATTGA
GAGGACATGACTGTCGGTTGATCTGGGAGCTAGAC----------GGGGGCTCATCACCCTGTCCCCTGTCCTTGAA-AT
GTACATTCTTCTCACCATTCCCACACTAGGA-ACTGTTTCAAGGACA-AGTCTTGAGAGAATAGTGTGTTACTGACAGCA
CCTTGACTGAATATATGA-TAAACCCCATTTAGGCCTCTGTCT------CAACTTTAAAGATTCTGGAA-ACAGGAGTGG
AGATCTACTCGTC-TGTGGCTGCC----AAAGACGAGCCTCCT-ATATAAGTTCCC-TTGCTTATTTAA------ACCTG
CTGATATGGAGTGGATAACCTCTTTCTTTGGTCT---------------------CTCCTTGACCTCCATGTACTTGGGC
CAGTTTCAAATTTCACC-CGGGGAGCTTCCAAGG---TTGTGAACCAACA---ACAA-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------G---TGTATATAT--------TTTTCAGTGTATAATAAATTGGTGGTTAAAATTATTCTA
AAGAA
>Manis_pentadactyla
CACAAGCATCTGGGAATCTGATTTTTGGTTATTTTGAATATTTAATTTGC---ATGAG---TGTTGGAGGTGGTCTTCAA
GAGGCTATGACTACTAGTTGGCCTGTGAACTGGACCTGGGCAATTGGAGGCTCCTCTCTCCATCCCA-GGCCTTGGG-AT
ATACATTCTGCCCACCATTTCCACACTAGGA-GCTGTTTGAAGGAC--AGCCTTGAGAGAGTAAGATGGTGTTGAACCCA
TCTCGACTTAATAAGTGGCTGAACCCAGTTAAGGCCTCTATAT------AAACTTTTAAGAATCTGGCAGGT-GGTGCAG
AGATCCACTTATCTTGTGGCTGCC----CAAGACAAGCCTTGT-ATGTAAGTTCTC-TTGCTTC---AGCCTGCC-TCCA
CCAGTCTGGAGTGGTCTGTCTCAGTTTCCCCTCC------------------------CCTGCCTTCTGTGTACTGGGGC
CAGTTTCAGATTTTACCGCAGGAAACTCCCAGGG---CTGTGAACCAACA---AGGA-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------G---TATGTATCT--------TTTTTACTGTATAAT----TGGTGGTTAAAATTAAATAA
AAAAA
>Sus_scrofa
CCCAAGTGTTTGGAAGTTTGATTTTTGGTTATTTTGAATATTTAATTTAT---ATGAA---TATTGGAGGAGGTCTTTGA
GAGGATGTGGCCGCTGGTTGAC------------ACAGGCAAACTGGGGGCTCCTCACTCTCTCCCCTGTCTTTGGA-AT
GTAC-CTCTGCCCACTGTTCTCATACTCAGA-GCTGTTTCAAGGATGTAGCCTTGAGAGAGTAATGTGTTATTGAGACCA
TCTGGACTGAATACATGGCTGAACCCCAATAAGTTCTCCTTAA------AACTTTTTAAGATTCTGGCA---CAGTGCAG
TGATCTACT-GTTTTGTGGCTGCC----CAAGAGAAGCTTCCT-ATGTAAGTTCCC-TTGTTTATGAAATGTGCCATCTA
CCCATCCGGAGGGGCACGCCTCTTTCCTCCTTCT---------------------CTCCTTGCCTTCCGTGTAC-AGGGC
CCGTTTCAGATCTCACC-TGGAGAACTCCCAGTA---TTGTGATCCAACA---ATGA-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------G---CATATATAT--------TTTTCAGTGTGTAATAACCTGATGTTTAAAATGATACCA
AAGAA
>Bos_taurus
CATAGGCATTTGGGAATTTGGTTTTGGGTTATTTTGAATACTTAATTTGT---ATGAG---TGTTGCAGAAGGTTTTGGA
GAGGATGTGAATGCCAGGTGACCTGT-AGCTTGACTCAGACAACTGAAGGCTCCTCACTCCCTCCC--GTCTTTGGA-AT
GGACA-TCTGCCCACTGCTCCCACACTAGCA-ACTGTTCTAAGGAGGCAGCCTTGAGAGAGTAATGTGTTACTGAGACCA
TCTGGACTGAATACATGTCTGAACACCATTAAGGCCACCATAT------AAACTTTTCAG--TCTTGCA---TGATGCAG
ATGTCTACTTGTCTTGTAGGGGCT----CAAGCCAAGACTCGT-ATG-AAGTTCCC-TTGCTTGATAAGCCTGCCACCTT
CCAATCTGGAATAGCCTGCGCCTTTCTTCAGTCT---------------------TCCCTTGCTCTCCATGCATGGAGGC
CAATTTCAGATCTCAGC-TGGAGAACGCTGAATA---TTGTGAACCAACA---ATGG-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------G---AATATTT-T--------TTTTCAGTGTGTAATAAATTGATGGTTAAAATTATACTA
AAGAA
>Equus_caballus
CACAAGTGTTTTGGAATTTAAATTTTGG--ATTTTGAATATCTAATTTAC---ATGAG---TGTTGGAAGAGGTCGTTGA
GAAGAAGTGACCACCGGTTGACCTGCAAGCTGGACCTGGGCAATTGGAGGCTCCTCAACCCCTCCC--GTCAGTGGA-AT
GTACATTCCGCCCACCGTTCCCACACTCCGA-GCTGTTTCGAGGACACAGGCTTGTGAGAGTAAGGTGTTGTTG---CTA
TCTGGACCGAATATGTGACTGCACCCAGTGCAGGCCTTTCTAT------AAACCTTTAAAA-TCTGACAGGCCAGTGCGG
CGATCTACTCATCTTGCGGCCACT----CAAGACAAGCCTTGTCACGTAAGTTCCT-GTGCTTATTAAACTCACCACCTA
CCAATCTGGAGTGGTCTGCCTCTTTTTTCAGTCT---------------------CTCTTTGCCCTCCCTGTATGGTGGC
CAGTTTCAGATTTCA-C-TGGGGAACTCTCAAGG---TTGCAAACCAACA---ATGA-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------G---TATATATAC--------ACTTCAGTGTGTAATAGACTGAGGATTAAAATTATCCTG
AAGAA
>Ceratotherium_simum
CGCAAGTGTTTTGGAATTTAATTTTTGGTCATTTTGAATATCTAATTTAC---AAGAG---TGTTGGAAGAGGTCATCGA
GAAGATATGACCACAGGTTGGCCTGCAAGCTGGACCTGGGCAATTGGAGGCTCCTCACCCCCTCCCCTGTCCGTGGA-AT
GTACGTTCTGCCCACCATTCCTACACTCTGA-GCTGTTTCAAAGATGCAGCCTTGAGAGAGTGAGGTGTTGTTA---CCA
TCTGCACTGGATACGTGACTGAACCCAGTTGAGGCCTTTCTAT------AAACTTTTAAAATTCTGGCAGGAGACTGCGG
AGACCTACTCGTCTTGTAGTCACC----CGAGACAAGACTTGTTTTGTAAGTTCCT-TTGCTTATTAAACTCACCACCTA
CCAGTCTGGAGTGGTCTGCCTCTTTTTTCAGTCT---------------------CTCTTTGCCCTCCTTGTATGGTGGC
CAGTTTCAGATTTCACC-TAGGGGACTCTCAGGG---TTGCAAACCAACA---ATGA-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------G---TATAAATAT--------TTTTCAGTGTGTAATAAATTGAGGATTAAAATTATACCA
AAGAA
>Myotis_myotis
-----------------------TTTGCTTATTTTGAATATTTAATTGAG---ATG-G---TGTTG--------------
GAGCACGTGACTGCTGGTTGATTGGTGAGCTGGGCCCAGGCAGTCAGAGGCTCCTCACCCTCTCCCCTGTCCTTGAA-GG
GTACATTCTGCCCACCATTCCCACAGTAGGA-GCTGCTTCAAGGACATAGTTTTGAGAGAGTAAGGCATTGTTGAGGCCA
TCTGGATGGT----------------------GGCCTCTATATATATAAAAACTTTTAAGATTCTGATG--TGGGTGCAG
AGATCTACTCGTCTTGCAGACACCCCAGCCAGACAAGCCTCAT-ATGTGAGTTCCC-TTTCTTACTAACCCTGCCAACTA
CCAAGCTGGAGTGGGCTGCCTCTTTCTTCAGTCT-------------------------TAGCCCTCCATGTACTGGGGC
CAGTTTCAGATTTCACC-CAGGG--------------TTGTAAACCAACA---ATGAGTACAGTGGGGCCTTGACTTACG
AGTTTAATTCGTTCTGTGATGGAGCTTGTAACTCAAATTACTCGTATGTCAAATCAAAAAGTGAATGAGTGAGACATGTG
ATGCTGGGCTGATGTTGTGGCGTTCACTGTGATGTTCGCTGCGCCAACTAGTGGTGGGGTATCTGAAGCTGGCTTGTAAC
CCGAATTTTAGCTCACAACTCAAAGCAAAAAATCGGCCGAGAGACGGCTCGTATCTCGAAAAACTCGTTAGTCAGAACAC
TCGTAAGTCAAGGCTCCACTG---TATATGTAT--------GTTTCAGTG----------------CTAAAATTGTACTA
AAGAA
>Murina_aurata_feae
-----------------AGAGTGTTTGCTTATTTTGAATATTTAATTTAC---CTG-G---TGTTG--------------
GAGGAAGTGACTGCTGGTTGATTGGTGAGCTGGGCCCAGGCAGTCAGAGGCTCCTCACCCTCTCCCCTGTCCTTGAAGGG
GTACATTCTGCCCACCATTCCCACAGTAGGA-GTT-CTTCAAGGATGTAGTTTTGAGAGGGTAAGGTATTGTTGAGGCCA
TCTGGATGGT----------------------GGCCTCTATAT------AAACTTTTAAGACTCTGATG--TGGGTGCAG
AGATCTGCTCGTCTTGCAGACACCCCAGCCAGACAAGCCTCGT-ATGTGAGTTCCC-TTTCTTACTGACTCTGCCATCTA
CCAAGCTGGAGTGGGCTGCCTCTTTCTTCAGTCTTACCTGCACCCCTCTCCCCCCCCCCCGCCTCCCCATGTACTGGGGC
CAGTTTCAGATTTCACC-CAGAGAACTCTCAGGG----TGTAAAGCAACA---ATGA-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------G---TATATATAT--------TTTTCAGTG----------------CTAAAATTGTACTA
AGGAA
>Condylura_cristata
CACACATG----GAAATTTGAGTTTTGGTTATTTTGAATATTTGACTTAC---AAGAA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------TATATATATATATATGTTTTTCAGTGTACAGTCAATTGAGCGTTAGAGTTGTACTA
AAGAA
>Erinaceus_europaeus
CATAAATATTTGGGAATTTTAGTTTTGGTTA-TTTGAATATTTAGTATAT---GAAAA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------TATATGTGTGTA-----TATTCAGTCTATAATAAATTTATGGTTGGAGATATACTA
AAGAA
>Homo_sapiens
CACAAGTGTTTGGGAATTTGA-TTTTGGCTATTTTGAATATTTAACTTAC---ATGAG----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------TACATGTATA-------TTTTCAGTATATAATAAAGTGATGATTAAAATTATACT-
---AA



Dog29_LINE

>L1_CARN7_3END
------------------------------------------------------------------------TTGTATGG
TGACAGATGGTAACTAGACTTATTGTGGTGATCACTTCACAATGTATACAAATG-TCGAATCACTATGTTGTACACCTGA
AACTAATATAACATTGTATGTCAATTATACTCAAATA------AAAA------------------AA-------------
----------------------------------------------------------------
>Canis_familiaris
AAAATAAGAAGACAAAGTT-TTAAATTTTTTTT----AGGGATGAGAGTGGAT---ACCA-AAAAGATA-----------
TGTCAGATGTTAACTAGACTTATTGTGGTGATCATTTTGAAATATAAATAAATA-TCAAATTATTAGGTTGTACACCTGA
AACTAATATAATGCTGTATGTCAGTTATACCCCAATAAAG---AAAATGGTTAAAA--TAAAA--AA----AAAAAGAAA
GAAA---TGTGGGTAGGAAGTCACATATGACCAT-GGCATAAGAAG------CTGGCCACAGTG
>Felis_catus
AAAGTAAAAGGACTAATTTTTAATTTTTTTTTTT---AGGGAGGAGAGTAGAT---CTAG-AAAAGATA-----------
TGTCAGATGTTAACTAGACTCATTGTGGTGATGATTTTGCAATACATACAAATGTTCAAATCATTATTTTGTATACCTGA
AACTAATATAATGCTGTGTGTCAATTATACCCCAATA------AAAATGGTTAAAA--TGCAA--AAT---AAAAAGAAA
GATA---TGTGACTAAGAAGTCACATATGACCAT-GACATAGGAAG------CTGGTCAAAGTG
>Manis_pentadactyla
TTTTTTAAATGACCAGTGTTTACATGTTTTTTTTGAGAGGAAGGAGAGTGGAT---ATAGAAAAAGGCA-----------
TGTCAGATGTTAACTAGACTTATTGTTGTGATCATTTTGCAATGTATACAAATA-TTGAATCATTATGTTGTACACCTGA
TTCTAGTATAATGATGTATGTTAGTTTTATCTCAATAAAGT-AAAAAAAATTAAAATTTAGAA--AAC---AAAGAAAAA
GATA---TCTAAGTAGGAAGCCATATATAATCAT-AGCATAGGAAGAG----CTGGCCAGAGTG
>Sus_scrofa
AAAATAACAT----------TAAAATTATTTCTGGCAGGGGAGGTAAGTAGAT---ATAG-AAACAATA-----------
TGTTGGATGTTAACTAGGC-----ACTGTGATCATTTTGCAA-------------TTGAATCATT--GTTGCACAGGTGA
AATACAAACAATTCGGGATGTCAGTGACAGCTCTGTTTTTTAAAAAATGGTTAAAGTTTAACAGCAAC---AAAAAATAA
AAGA---TGTGAATAGGAAGTCACATATGACCAT-GGCCTTAGAAGAGCTATCTGGCTAAAGTG
>Bos_taurus
AAAATAAAATAACTAATT--AAAAATTATTTTTGGTGAGAGAGGAAAGCAGTT---GTAAGGAAAAAAA-----------
-AAAGTATGTTAACTAGGTTTAT----GTGATCATCTTGCCA-------------TTGAATCATTATGTTGTATACCTGA
AATTAATACAATGCTGTATCTCAATTATAGCACACTT--TT-AAAAATGGTTAAATTTTTTTA--AA----AAAGGAAAA
CATT---TGTGAACAGGAAGTTACATATGACCATGGGCGTTGGAAGAGTTAGTTGGACAGAGTG
>Equus_caballus
TAAATAAAATGACTAATTTAAAAAAAATTTTTTTGAAGAGGAGGAGAGTGGAT---ATAGACAAAGATA-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------TTGGAACAGAAAGTCACATGTGACCAC-AGCATAGGAAGAG----CTGGCCAAAGTG
>Ceratotherium_simum
AAAATAAAATGACTAATTT-TTAAATGTTTTTCTGAGGAGGAGGAGAGTGGAT-------ACAAAGATA-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------TTTGAACAGGAAGTCACATATGACCAT-GGCATACGAAGAG----CTGGTCAAAGTG
>Myotis_myotis
AAAATGAAATGGCTAAATT-TTAAATTATTTTT--AAGGGGAGCCGAGTAGAT---ACAGAAAAAGACA-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------TGTGGACAGGAAGTCACATATTAGCAT-GGCGTACAAAAAC----CTGGCCAAAGAG
>Rousettus_aegyptiacus
AAAGTAAAATGACTAATT--TTAAAATGTTATTTGAGGGAGAGGAAAGTAGAT---ATAGAAAAAGACA-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------TGTGAACAGGAAGTCATATATGGTTAT-GG-----ATAGAG----TAGGCTAAAGTG
>Condylura_cristata
TAAAAAAAATCACTAATAT-----AACTTTTTAAGGGAGGCAGGAGAACAGAT---ATATAAAATGCCA-----------
--------------------------------------------------------------------------------
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-------TGTGAACAGAATG---CATACAACAAT-GGCATATGAAAAG----CTGACCAAGGTA
>Erinaceus_europaeus
AAACTGAAAGGACTGAATTTTTAAATGCATTTTTGAGGGGGAGGAGAATAGAT---ATATAAAAATCTG-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------TGTGAA-AGGAAGTTACATATAACCAT-GGCATA-GAAGAT----CTGGCCAAAGTT
>Homo_sapiens
AAAATAAAA-GGCTAATTC-AAAAATAAT--------AGGAGGGAGAGCGTGT-----AGAAAATTACA-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------TGTGAACAGGAAGTCATGTGTGACCAT-GGCTTAGAAAGGG----CTGGCCACAGTG



Dog31_LINE

>L1_CARN5_3END
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TTTTT
TATTTGAGTATAGTTGACACACAATGTTACATTAGTTTCAGGTGTACAACATAGTGATTCAACATCTCTATACGTTATG-
--------------------------------------------------------------------------------
-----------------------------
>Canis_familiaris
AACAGCCACCATTGAACCACCA-AATG--ATGTTAA------------------GCCATTATTATAATTATTAT---TAA
ACTT---------------TTAA-AAAA---TTGTTACTACATGGGAAGA-AT-TTGTGAGGGAGATTCAACTTTC--TT
TTTAGAGGTACAATTGTCACATAACGT---ATTAGTTTCTGCTGTGTAACATATTGATTCAATCATTGCA----------
--TTAACTTATTTTATTTTTTATA---CATA-GGTAGAGGGAAT---------GTCAACCTCCTTTTCCAAACCTGTTAG
TGACTC-CTATTGTATATTGG----AGAA
>Felis_catus
AACAACCACAGCTGAATCACTA-AATG--GTGTCAA------------------GTCATTATTGTAATTATTAT---TTA
ACTC-----------------AA-AAAA---TTGTTACTACATGGGAAGA-AT-TTTGGGGAGGGATTTGATTTTC--TT
TATAGAGTTATAATTGCCATATAACAT---ATTAGTTTCTGGTGTATAACATAATGATTCAGTCTTTGCA----------
--CTAACTTGTTTTATTTTTTATA---CTTA-TTTAGAATCAAT---------GTCAACCTCC-TTTCCAAATCTGTCAG
TGACTC-CTTTTGAATATTGG----AGAA
>Manis_pentadactyla
AACAGCCATGACTGAATCACTA-AAAG--GTGCCAA------------------GTCATTATT---ATTGTTAT----TA
ACTT-----------TTACTTTC----A---TTGTTATTTTATGGGAAGAGGTATTTTTGGAGGGTTTTGATTTTT--TT
TATTGAGAGAAAATTC-------ACCTCAAATTAGATTCAGGTGTACAACATAATGATTCAACATTTGTA----------
--TTAACTTATTTTATTTTTAAAA---CTTA-TTTAGAGGAAAT---------GCCCACTTCCTTTTCCAAACC-ATCAC
TGACTC-CTATTGTATATTGG----AGGA
>Sus_scrofa
AACCACCATAATTAAATCACCA-AAAG--GTGCCAAGACATTTTCATTGTTGTTGTTATTATTACTATTATTAT----TA
ACTTTTAAATTTAATTTTATTTT-AATA---CTGTTACTACATGGGAAAA-GAATTTTGCGGGAGGTTTGA-------TT
TTTTGAGATATAGTTTTGACATAAAATTATACTAGTTTTAGGTGTACAACATAATAATTTGATATTTGT-----------
-----ATTTATTTTA---TTTTTT---TAAA-CTTAGAGGCTGT---------GCCAACCTCCCTTTTCAAACTGATCAA
TGACTC-CTACTGTATATTGG----AGAA
>Bos_taurus
AAATGTTACAACTGAATCACTA-AAAT--GTGCCAAGACATTATTATTACTGTCATTGTTATTTCTATTATTAT---CTA
ACTTTTAAATTTAGTTTTATTTT-T-TA---TTGTTACTACAGGGGAAAA-GT-TTTAAAGGGAAGTTTGATTTTTCTTT
TTTTGAGATATAGTTGACACATAACATTCACTTAGTTTTAGGGATATAACATAGTGATTTGATACTGGTT----------
--ATAACTGAT-------TTTTTT---TTAA-CTTAGAGGCAAT---------GTTAAATT--------AAATCTATCAG
TTACTC-CTATTGAATATTGGGGAAAAAA
>Equus_caballus
AACAGCCATGACTGAATCACTA-AAAG--ATCTTAA-------TTATTATTATTATTATTATTATTTTTATTAT---TTA
ACTT--------ATGTTGTTTTT-AAAG----------------------------------------------------
--------------------------------------------------------------------------------
---------------------------CTTA-TTTAAAGGCAAT---------GCCAATCTCCTTTTCCAAACCTGTCAA
TGACTC-CTACTGTAGATTGG----AGAA
>Ceratotherium_simum
AACAGCTATGACTGAATCACTA-AAAG--ATGCCAA------------------GTCATTATT---ATTATTAT---TTA
ACTT--------ATATTATTTTT-AAAA----------------------------------------------------
--------------------------------------------------------------------------------
---------------------------CTTATTTTAGAGGCAATAAATTTAGAGTCAATCTCCTCTTCCAAACCTATCAA
TGACTC-CTACTATATATTGG----AGAA
>Myotis_myotis
AATTGGCATGACTGAGTCATTA-AAAG--CTGACAA------------------GAGATTTTT---ATTGTTAT---TTG
ACTG--------ATGATAATTTT-TAAA----------------------------------------------------
--------------------------------------------------------------------------------
---------------------------CTTA-TTTAGAGGCTAT---------ATCAATTACCTTTTCAAAACCTATCAA
TGATTC-CCAATGCATATTGA----AAAA
>Rousettus_aegyptiacus
AATAAGCATAATTGAATCACTA-AAAG--ACTCCAA---------------------ATTATT---AGTATTAT---TTA
ACTT--------ATGTTATGTTT-TAAA----------------------------------------------------
--------------------------------------------------------------------------------
---------------------------TTTA-TTTAGAGGCAAT---------GTCAACCTCTTTTTCCAAGCCTGTCAA
TGACTC-CTATCATATATTGG----AAAA
>Condylura_cristata
AACCGCCTCAAATTAACCATTA-AAAGTCACTCTAA----------------ATGTCACTCTTTGTATTATTAT---TTA
ACTT----------GTAGTTTTT---AA----------------------------------------------------
--------------------------------------------------------------------------------
---------------------------TTTA-TTTACTGACAAT---------CAAAGCCTCCTT---------------
-------------------------ATAA
>Sorex_araneus
AGCAGTCACAACTAAATCACTACAATA--GTGCCAT------------------CATTTTACAATGATTCTCAT---GTA
AGTT---------TGCCCATTTAAAAAA----------------------------------------------------
--------------------------------------------------------------------------------
---------------------------TTTA-CTTAGAACAAAA---------GTTGAACTCCTTTTCCAAGC--ATTAC
TGATTG-CAAATCTATATTGA----AGAA
>Homo_sapiens
AACGTCCATAACAGAATCACTA-AAAG--ACATCAA------------------------------ATTATTAT-----T
ATTT--------------------AAAA----------------------------------------------------
--------------------------------------------------------------------------------
---------------------------TTTA-TTGAGAGGCAAT---------GTCAATCTGTTTTTTCAAACCTATCAG
TGACTCTCTATTGTATATTGG----AGAA



Dog31_LTR

>ERV54-EC_LTR
--------------------------------------------------------------------------------
------------------------TGTTAAAAAC----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AAGACAACA------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------GGCCCAAAATGGAGTCACTTATGCTAAGCCCCACGTCACCAAACC
GAGACTTAACTTAATT-ACAGTTTCGGCTCTCCCAGAAATGGAATCTTAAACCAGTCAATCAGGAATCACCTGATCAGCA
C----TAGTTAGGTAATCTGCCTGATAGAC------------------CCCTGCCATC----CCCTAAAGGAAAGTAACC
TTGCAATAACCAATCCAC-TTTTTTGCCTAGTATAACTTCCTTGTTCCTGCTCCCTTCTGCCTATAAAAGTCTTTCATTT
TGTACAGCTCCTCGGAGCTCCTTTCTATCTGCTAGATTGGATGCTGCCCAATTCATGAATC-ATTGAATAAAGCCAATAA
GATCTTTAAAAT-----TTACTCAGTTGAAT-------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TTTGT
TTTTT-AACA----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------
>Canis_familiaris
AAAACAGGCTGC--------------------CAGATT--------------TGGCC-ACGGG-------CCAGCATTGG
CCAACTCT-GCTCT---GCAC---AGTTAAAAAC----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AAGACAACAGGGGCTCCTGGGTGGCTCAGTGGCTGATCGGCTGCCTTGGGCTCAGGGCATGATCCCGGGGTCTGG
GATGGGTTCCACAGCTGGGTCCCTGCAGGGAGTCTGCTTCTCCCTCTGTCTGTGTCTCTGCCTCTCTCTGTGTCTCTCAT
GAATAAAATAAATCTTTTAAAAAAACAAGACAACAGGTCCAAAATGTAGTC----ACGCTAAATCTGGGGTCACCAAACC
GAGATTTAGCTGA----TAGTTTCCA-CTCTCCTAGAAACGGAATCTT-AACCAGTCAGTGAGGAATTGCCTAAGAAGCA
C----TCCTTAGGTAATCTGCCTGCCGGCCCCCTGTCCACCGCCCCTGCCCTGCCATC----CCCTAAAGGAAAGTGACC
TTGTCAGGACCGACCTGC-TTTTTTGTCTGGTATAACTT-CTTGTTCCCA-TCCTTCCCACCTACAAAAGCCTTTCATTT
TGTACAGCTTCTCAGAGCTCCTTTCTAGCTGCTAAGTGGGATGCGGCCCAATTCACGAATC-GCTGAATAAAGCAAACAG
GATCTTTTCACT-----TTACTCAGTTGAGC-------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TTTGT
TTTTTCAAGAGCCTGGTGGCAGTGGTAGGATACA-AGAGACTTC-------TTCAGGGA------------GCCAACCCT
TTGAGTTCT----CTTTCTTGCCATTTCCAGGGTCTGTGGATAAGGTCCTCTGAGCTCCAAGCTCCGCTCCGGAAGAATT
CCCGAGGTAATCGGCTTTTCAATCCAGGGCTGGCAGGTCAGTCTAAACTGGCCTTGACGGGATCCCTGGGTGGCGCAACG
GTTTGGCGCCTGCCTTTGGCCCAGGGCACGATCCTGGAGACCCGGGATCGAATCCCATGTCGGGCTCCCGGTGCATGGAG
CCTGCTTCTCCCTCTGCCTGTGTCTCTGCCTCTCTCTCTCTCTCTCTGTGTGTGACTATCATAAATAATAAATAAAAATT
AAAAAAAATAAGTAAATAAACTGGCCTTGACTGGTCCCCTGGTTGGTCCATGGTCCCAGTCCAAGGCTTAGCAGATCAGC
TTGAGCTAGCAGATAGATGCCCCCTGGATCCCTAGCCCC-------TGGTTAGTTCCTAGTCCCCA-TCTGTTGGGATCT
GCTCATTTGGCCTAGAGATCCACACTGGGAGCTGCTGGTGCTGCAC-ACCGAAGGTCTTCCCTTGGCCGGTC-------C
ACGGTACCATCTCTCTGGTTACTGCTAAAGTCCTGAGCT--GTTTCCTTGGTTACTGCTGGTCTGTATTACTGTGCAAGT
GAAGTAAAGGAGTAATAGATCCACTTTTAACAGGAATCCCAGAAGCCAAAGCTGCAAAATTGGTGGGCACAGCAGGCCAA
GCAGTGAACAGCTGTAGGAGTGCTTGCCACGTAACTCTAAGGCTCTTGTGCTAGGATAAGCTGGTCACAACATGGGTTAG
ATGGACTCCAGGACACCTGCCCACCTCAAGAAAATTTCCATGCAACAAGGTACAAGGTAAAGAGCACCATCCAATCCCCA
ACCCAGTGGCACATTGCTCTTAGGTATTAATTTGGCTCCAAGGGACCAAAGGCTTAGCTAAGGAA-TGGTATCCCTCTAG
TCTCAAAGACTTGAGCATGCCAACTTCTGGTAGACCTGCTTGTTTTATACCTAAGAACTATGGTCTTGAAAGCTGTAGAT
ACCTCCAAGAAATGACAAAAATCTCATGAAGACAAGCTAGAAGTACAATGGCCATCATGGAGAAGACAACATCATTCAAG
ATTTCATT------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------TGAAAGCAAGGGTTCCCAAATCAAACAGAATAGGATACCTATTTTGATTGGCAT
GCAGAAGCC------------------TCCAAAATTGCTTCATTGAAAGATTGTTTGCAAAAGGTTAATAAAAAATCAAA
GACATAAGAGGTACCTAAAACAAAAGACTAAGATGTCACTCCTACTGCTCCCCTCTAA---CCTTTATCTGAAATACTC-
-GGTCTGCAGATCCTCTGCCTGAATTGCCTTTTCACTAGGCAGAGTTGGCCTGGGACCCTGGGTGGCTCAGTTGGTTAAA
TGTCTGCCTTCAGCTCAGATCACGATCCTTGGGTCCTGCACCGAGCCCTTCATCCTGCTCCCTGCTCAGCAAACAGCCTG
TTTCTCCCTCTATCCCTCCCCCTGCTCATACTTTCTCTTTCACATGTTCTCTCAAATAAATACATGAAATCTTAACAAAA
AAACTGAGGTCAGCCAAACTAGTGGCCTTACAGACACCCCCATATCTATCCTTACAGACCTTTCATATGGGCCCCTCCCA
GGGTTAGCGGGACTCTGAGAGATTTCTCTGGTAAATTACTACCGGAAAATAACTACCAGTTATTCCCTTCAACAACCAAG
GGGAAACTAAAATTGAAATTAATGGAAATCCTTACCAAATTGTAGTAGATACTAGAGCTATACTCCTCTCTACTTTAAAC
CCTACTCTGGAGCCTCTAGAT-AAACTGTGGGAAAACTGGCAGAAGTTGGCAAAGGGTGATCTGTGTGTCTCA-------
-------TTCTGTGTCCTGAGAATTGTCTAAGTC-TTCTCCCTTTTGGCTGGGGGCGGGGTGGGGTGGGGGGTGCCAGTA
GCATCCTTTGCAAGCCCCCCCTGGGAATGCCTCTTGTATCCAA---GGGTGGAGAGGGATGGTTCAGGACTGCCAGGACT
ATTCTTTCCAGCTGTTTTTCCCAGCTGAAACCTGACAAGCTATTTAAAAGGA---TTTTTTAAGTAGCTCTGTGGTCAGA
AGTTGGCCAAATCGGAA---GATATTCAG-ACCTGATAGTAACGGTTTTTAGCTCC-CTCCTCTCAGCTAAGCTTACCCA
AAGAGGGGAAGGAACACATCGGGAAGACAAACCTCTAAATCTAGAACATAGGAATCTTTTTAAAGATTTCCATCTTATTT
GAATATCTCCTCCCTGTATAAAAAGACACGAATTGACAATAAGGTAGTTGGGCAGGAGGGTCAGCCCTTTTG-----ACT
TTAAGTCACAACCCCATCCTTCGAGGAATTAA-------AGCCTTTGTCTTCCAAACTGAGTCTTTACAAGAATGCAAAT
ACAGCTCTGGAGGCAATTCAAAATCCACTTATCCTTTTAACCAATCCCCAAAACTCACCCATTCATCTCAAAAGGCTCAC
AAA----ATTCAAGATTTAGGAAACAGAAATCCTTAGAAGGAGGAGCTTGCATTCTCTCCCTGTGCTTTTGAGATGTAAA
TGTTCTACATGGTCTCT---CTAGGAACTGAGGTAATTCTTATCAGAAGGGGGGGGGAAGTTGCGGCAAGGATATTCGAA
AAGGAGGGAAATGAAAAATCCT----------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------GA
AAGTCTTCTCTACAAATATTGGTAAAAAGTTTAAACCATCAGAATGGGTAACCTTAACTTATTGCAACTTCTAGAAACAC
AATTTGGATCTAGCTGTTCTTTTAGAAACTAGTGAG-------TTACTGTACCCA---------TCTTGTGCTTAAAATT
ATAAAACAACAGCTGTAAGGTCTGTTTGTGTCTGTGTGTATGT--------------TACATATGCTGTAGATGTGTGA-
-----TTTAAAAAAAAAAAAACCTCTGGATGGTACTGCCAAAATTAATTTT-----------------------------
-------------------------------------------AAAAAAGAGTAA-------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------TTAAAGAGAAATAAGCA
TTTACCAAATTAAATATTCTTAGACTCTTAGAAATAAAAGAACTAACCCGAATATTTTTCAGGTTTACCTGATTGGGGAT
AGTCTTTGGCTTAAAAA---------------------------------------------------------------
---------------------AAAAGCAAGTCTCAGCTTGTTGGTTTAATTAAAACAGGCATGTATTTAGAGCCACCAGC
ATTAAATATACGACCTGTATTCTACCTGGGTTTTCTACTCAGATAGACTGTTCCCTCTGTTACAAAGTCTGTCAGCAAGA
AAAATATCTTAGTATAATATTAGAGTTAACTTTGTTTAATGTTTGTAAAATTTTCATGGGTAATTTAA--ATGTTAAAAA
CAGGGGTGCCTGGGTGGCTCAGTTGGTTATACGCAGCTGCCTTTGGTTCAGGACCTGGGATGGAGCCCCAGATCAGGCTC
CCTGCTCAGTGGGGAGTTGGCATCTCCCTCCCCCTACCCCCTAACTCATGTTCTTTCTTTCTCTCTCTAGCAAATAAATA
AAATCTTTAATAATAAATATA-TTAAAGA-------CAAGTGATTTAGATAGATGTAAGTAGGATAAAAGTTTTTAGAAT
TTTGCTATA-----TTAAATGATGTATAG------------TCACTGAG----TAGATCATTTTCAAATAAAATA-----
---------TAATAACACATTAATTCTTGATCATAGGTGTATCTAATTTTACTTTTGG---CTTAATATAGAGAAACTTA
AGGTATGTGGGTATGTTAGTAAAGATGTTTCATGCAACACTGAGAAATCCACTATGAGAAAGAATATACCCCTTCAAGTT
ATGAAATGTCTTT-TACGTTTGTTGATCCACAGAATGGTAGCGTAGGAGACAGTCTGTGATTGCTTACTTCTTAGTTTTT
GCTAGGAAAT-AGGATTCTGTGGATTAAGAATCCTAATAAATAGAAGTACCTGAACCTCCTTAGAAATAGCAAGGGTGAA
GGAAAACAACACTATGTATT------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------AAGAGTAGGTAAGGAAAGTAAAATGACTGGTTGTTTCAGAAGGAGAAAAAACATAC
ATATGGGACAAGATATGAATGGATATAAAAACAGTTGTAGGTTTGTGGAAATGGAATCCTGCAGAG-GGATTTTACATGT
GATCAAATAGGCTAAGATTGGAATGGATTTATTTATTAAGTTTTTCTAATGAGTTTTAATAGCAAAAGTGCACTGGTACA
AAATTAGAATTTGATTCTCTCCCTGCTAAAAGGACCGTGTTCTCTTGGACCTTTGGTATGCTTTAGATCAGAGATGGTGA
AAGTTGCCTTATCTTTTAAGTAACCTGCCTGGGGATCCCTGGGTGGCGCAGTGTGCCCTGCCTTTGGCCCAGGGCACGAT
CCTGGAGACCAGGGATCGAATCCCACATCAGGCTCCTGGTGCATGGAGCCTGCTTCTCCCTCTGCCTGCTTCTCCCTCTG
CCTGCGTCTCTGCCTCTCTCTCTCTCTCTCTCTCTGTGACTATCATAAGTTAAAAAAAAAAAATTAAGTAACCTGCCTGG
GCAGCAAAGATTTCACGTTTTAACCAAAATAACTTCC-TATGCTTCACATTG---TCATCAGCTCTTGGGTTACTTAAGA
AAATCCAATCTTCTCAAAACTAAAAGAGCTAAATTTTGTTCACAGCTATGTAACCATCTGCATTTGCCTTTAACATCATT
TTCTACTGTCATTTTGGTTAAACAGATAATGAAGTATTATTTCATAATGATCTGTGATCCTATTTAGTCAAA--CATTCA
AACTGCTTGACGTTTTGACAACTTCCTAAAATCAAATTCTAAATGGGGGTTTTTCTCCATCTTCAAGTAACTCTGAAATT
TCCCAGAGGGTCCCTGGAAAATCTCAAAGGATTTATCTCTCATCTGGTAAAATATCAAACTAATTAGGTTTATTTGCTAT
TAAATTATGTGGGAAGCATTATCAAGT--AAGAGATA-CTAAACCTCCTTAGCCTATACCTGTATGAGCAAAGGTCATTA
ATACAAGTGTTCTAGAAAATGTGTGATACTCTTAGAAATCTGATATGTCCCAGTATAATTTTATCAGTCATAAATGCAAT
TATTACCTTAAAATGTTGTGCATCGCACAAATAACCAAATTTCCTTGTCATTTCCATTACGAAGAACCCTAACGATGAGC
ATCTTTTAAGTCTTTTGACATTTACAGACTACTTACTGTTTTACTCTGATGCTTTTGCAGAAGTGAGACTCATGACAAGG
ACCCTACCAGGAACTCCGGATCACTGACACGGCTGCCATATTACAAGGTATTGAAACGTGGGGTGCATATTTCACAGCTG
AAGAAGGCCCCACCTGACATCTGGTCCTGTGCAAATGCTAGAGACCTCAAAATCAAATTGGCTATGAAGAGAAACAGCCA
ACATCAAGGTAGACTGCTTCTGCCCAAGACATCAGAC-CAAGTGAGTTCCTCTCTATTCCTCCTTCCCTCCCTGACCATC
CTTTTCCTAATTCTTAAA-----CAGGCCTTTATGATTCATTTGCCCATATTTTGCTCTGTTCTGGCCTGAAAGATAATG
CCACTGTTCATATGCTCAGGGTGCTGCAAACAGCGATAGCCCTATCCCCAAACTACTGCTGGACTGGCCCCAGTGCTGCC
GATCCTGTAGTTCTGCCAATCACATACTTCT--CTGATTGCCAAACACCTTGATTTCTCTGGAACTAAGTAAGTTCCCTC
TCTATGAGGTCAGGTCCCT-----------------TTCCCCTGCCTCAGTTTAACAAGCCCAAACCCAGGGAACCCTGT
ATCTGAGCTCTGTACCAAGAAGGGGACA-----TGAGAGTAACCAGAACAAAACTGCCTGTGTGGTCTACACAGACTTAT
ATTTAACTGGCCTCC-TCGCTGTCACCTTCCCAGCCCTGAGCCACAAACTCAAGCAGGAATTACCAGGGGGCATTCGTGA
CTACCTAGATAGCTTCCTTTGGTAGAT----CACTGGCTCTTGGCAAGGGTGAGTGCAAAAGAAGCTATTGCCAGGACCT
CACCTTAACCCTTAAAGTTACGTATTGCAGAATTCCCTGTGAAAGTC-ATAGCTGCCAACAAAAAATCCCTGGACTCTCT
AGCCAAAGTTGTTCTTGAT------------------TGTTGTTTCAGCAGAGCAAGGAAGTGTCTGCACTGTGGTCAAT
GTTACTTGCTGCACTGAATGGACACTTTGGGGGAAGCTGAGCTCAGCTGCATAAGACCACTGTACACAGCCAGCGGGCTA
AAGAAAGGGACTCCTTCAATGGGATTTGATCTTGATGGCTATGGGTTTTGGG-GACTATGGCTCTGAGGTACTCCAGACA
TTGGGAATTGTCCTGCTTATAATAATCATAGGGGCATCTGGGTGGCACAGTGGAGTAAGCAGCCAGCTCTTGGTTTTGGC
TTGGGTCATGTTCCCGG---------------------------------------------------------------
------------------GGTCCTGGGATCAAGGCCC-TCACTGGGCTCTGTGCTTAGCA--------------------
-----------------------GGGAGTCTG-----CTTGGGATTCTCT---------------------------CTC
TCCCTCTG---TCCTTCCTTCCACCTGCGCCCCCCCAAAG-------------------------TGTGCTCCATAATAA
ATA-----------AATAAATCTTTT---AAAAAATCGTAATAATCTTCCTGGTT---------CACCGTATTCTC-TCA
CAAGC---------------------TTTAAATGCATGTTCATGTTCACAGTCTCTCACAAGCTTTAAATGCACGTTCAT
G----------------TTCACAGCCACTACCCACCAAGCAACTGATCTCATTGAGAATGGAACGTCGGGATGCCTGGGT
GGTTCAG-------------------------------CAGTTGAGCGCCT----------------------ACCCTTG
GCCCAGGGCATGATCC-----TGGAGACCCGG--GATTGAGTCCCACATCGGGCTCCTG--------------------C
ATGGAGCCTGCTTCTCTCTCTGCCTATGTCTC---TGCCTCTCTCTCTCTCTGTGTCT--------------CCCATGAA
TAA----ATAAAATAT------------------TTTTAAAAAGAGAGAGACA------------------------GAA
TGG--------------AACGTCAGAAAGA------------------------------------------------AA
TGAAGAGAGGGACT---------------------------------------GAAT--------GTGAACA----TGAA
CCTATAGTCATG----------------------------ACTTG-TGAATAACACA-----------------------
----------------------CCAAAA-----------------------GTCAGCAAAAAAA----------------
------CACCATCACC---------------TGTGAATATCAACAGATTTGGCAA---------------AACTCAACTT
CCAAGTGG-------TGACTGTGAGTAGCGCTAA-----------------TGTCATAAACTTTGATCACATCTCTCAG-
----GTTTATTAGCGTCTG-------------------------------------------------------------
---------------ACCAAAACAGGGAATTGATAAAAATAAAAAATAATGAAATAAAAATTAAAACAAAACAGGCCCAT
GTCACCAAACTTCACAGTTTCCACTCTCCCAGAAATGGAATCTTAAGCCAGTCAATGAAGAATTGCCTCATCAGCGCTAA
TTAGGTA--------AACAGACCCCTGCCATCCCTTAAAGGAGAGTGACCTTGTC--ACTAATCGGCTTTTTTGTCTACT
ATAACTTGATTGTTCCTTCTCCCT--------------TCTTCCATTTTCTACAGCTCCTTGGAGCTCCTTTCTCTACGC
AGGATGGAATGCTTCCTTGTTCACAAATCATTGAATGGAGCCAG-TAAGATCTTTAGAAAATTGACCCAGTTGAGCTTTG
TTTTTTAACA---ACAC---CATGAAGGGAAATAGCTACTCCTAA------ATGATTCT----------ATCAGTGCA--
-CCAAAATA
>Felis_catus
AACACAGACAGGGAGC----------------CGGATT--------------TGGCCCGCAGG-------CCATTGTTTG
CCAACCCCTGCTCT---ACGC---TGTT-----G----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AAAACAACA------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------GGTCCAAAATAGAGTCACTTGCACTAAGACCAGAGTCACCAAACT
GAGACTCAACTGA----TAA-CTGTA-CTCTCCCAGAAATGGAATATTAAAC----CAGTGATGAACT----AATAAGCA
CTACTTACTTAGGTCACCTGGCTGACAGCC------------------CTCTGCCATC----TACTAAAGGAAAGTGACT
TTGTCGTGACCAACCTGCTTTTTTTGTCTAGTATTACCTCCTTGTTCCCATTCCCTCCCACCTACAAAAGCCTTTCATTT
TGTACAGCTTCTCAGAACCCCCTTCTATCTGCTGGATGGGAGGCTGCCCAGTTCACCAACT-GTTGAATAAAGTAAGGAC
GATCTCTGCACT-----TCATTCAGTTGAGTTTGGGGTTTTTTTTAATGCTGATTTTATTTATTTGGGGGGGGGGTACAG
AGAGAGACAGAGAGACAGAGAGAGAGAATCCCATGCAGGTTCCATGCTGTCAGTGCAGAGCCCGACACAGGGCTCGATCC
CATGAACTGGGAGATCATGACCTGAGCCCCAGTCAAGACTCGGACACAACCAAATGAGCTACCAGGTGCCCCAAGTTTGA
GTTTTTAACAGTTTAGTGGCAGTGGTAAAACGCAGAGAGACCTCCGGCCCCTTCAGGAATGGGAAACATATGTGGACCCT
TAGACTTGTCTAACTTTGTTGCCA-TTCCAAGGCCCGTGGATAAGATCCTCTCAGATCTGAGCTCTGCTTGTGTTGAGCT
CCCGGTCTGCTTGGCTTTCCAGGCTAGGATTCTTGGGTCGGTCTCAA-TGGAC-TGA----AGTCTCTAACACAGCACCA
GGC-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------CAGTCCTCGTCCAG-------------GGC
TTGAGCTGGCAGAGGGT-TCCTCCTGAAACCCGAATCCCCAGCGCCTGGTTAGTCCCTTGTCCC--ATATGTTGCCGTCT
ACTGGTTTGGTCCATAGTTCCACATTGGGAGCTGCTGGTGCTGC-TCACCTAAGGCCTTCTCTTGGCCGGCCCACAGTCC
ATAGTACCATGTCTTTGGTTACTGCTGGCATCCACAGCTCCACATCCTCAGTTACTGGTGGTTTCTGTTCACGTGCACGT
AACGTAAAGGAGTAATACATCCATTGTTACTGGGAATCTCAGGAGCCAAAGCTGCAAAACCGACGGGCACGGCAGGCCAG
GCACTGAAAAGCTGCTGGGGTGCTCACCACCTAACTCGAAGACTCTCGTGCTAGGATAAGCTGGTCACAACATGGGCCAG
A----CACCAGGCCACCTGCCAACCTCAAGAAAATCCCCCTGTAATGAGGTACAAGGTAA--GGCACCATACAATCCCCA
GCTCGGTGGCACATCCCTCTTAGGTATTAATTTGCCTCTGAAGAACCCACAGCTTGGCTGAAGACAAAGAGATCCTCTAG
ATTCAAAGACTTGAGCATGCCAACTTCTGGTACACCTGCCTCTTTTATCCCTGAGAATTATGGCCCTGGAAGCTGTAGTT
ACCTACAA-AAATGACAGA-CTCTCACTAAGACAAGCCAGAATTACAATGGCCATCATGGAGAACACTCCAACTAGACAT
CATTCGTTTAAGAAATGCACTTGAAAGGGGCACCTGGGTGGCTCAGTCGGTTGGGCATCAGACCTTGGCTCAGGTCATGA
TCTCATGGTTTGTGAGTTCGAGCCCCACATCGGGCTTTGTGCTGACAGCTCAGAGCCTGGAGCCCGCTTCAGAGTCTGTG
TCTCCTCCTCTCTCTGTCTCTCCCTCCCTTGCTCATGCTCTATCTCTGTCTCTCAACAAATAAATGTTAAAAAAAAAAAA
TTAAAAGAAAAAAAAAGAAATGCACTTGAAAGCAACGGTTCCCAGGTCAAACAGAATGGGATACCTATTTTAATTGGCAT
GCAGGAGCCTCCAAAAGGCTTCAAGATTCCAAAATCGCTTCATTGAAAGATTCTGTGCAAAAAGCTACTACAAAATTGAG
GACACAAGAAGTACCTAAAACAAAAAACTACGATGTGACTCCTACTGCTCCCCTCTAGTCTCCTTTACGTG-AGCACTCA
GAGTCTGCTAATCGTCTATCTGAACTGCCTTGCCACTCTGGAGAG-----------------------------------
-------------------------------------------------------------------ACCGCACAACC--
------------------------------------------------------------------------------GT
AAACAGAAGCCTGCCAAACTAGTGGTCTTCCAGACGCCCCCATATCTACCTTTGCACAC--TTCACATGGGCCCCTCCCA
GGGCTGGCGGGACTCTGGGGGACTTC-CTGGTG-----------------AACTACTAGTTATTCCCTTAAACAGCCAAA
GGGAAACTAAAATTGAAATCAATGGAAATCCTGGCCAGATTCTGGTAAATACTAGAGCTATACTCC---CTACTTAAAAC
TCTACTCCAGAGCCTCTAGATGGGATTGTGGGAAAACTGGCAGAAGTCAGCAAAGGGTGACATGTGTGTCTTCTGGGAAG
TCTTGTTTTTCATGTCCTGAGAACTGCCTAAGTCTTTCTTCCTTTTGGCTA-----TCTCTGGGGTTGGCAGAGCGAATA
GTATCCTTTTTA--CCCTCCCTGGGAATTCCTCTTACATCCAAGGGGGGTGGGAAGGGACTATTCAGTACTGCCAGGAAT
ATTT------ACTGCTTTTCCCAGCTGAAACCTGACAAGCTATTTGAAAGGATTTTTTTTTAAGTAGCTCTGTGGTCAGA
AGTTGGCCAAACTGGAAGCTGATACTCAGAACCTGATAGGGACTGTTTTTAGGACCTCTCCCCTTAGCTAAATGTACCC-
-AGAGGCAAAGAAAAACATTCCAAGGACAAAGTTCTAAATCTAGAACACAGGAATCTTTT----GATTTCCATCTTAGTT
GGAGATCCTCTCCCAG-ATATAAAGACACAAATTAAAGATAATATAGTCGGGTGGGAGAGTCAGCCCTTTTGAAATCATT
GTAGATCACAACGCAATTCTTT-AGGAATTAAGAACAACGGTCCTTGTCTTACAAACTGAGTCTTTATGAGAACAGAAAT
GCAGCTCTGGAAGCAATTCAAAGCCTACCTATCCTTTCTACC-CTCCCCAAACCTCA-CCACTCTCCTCAAAAGGCTTGC
AGGTATCATAAAAGATTTAGGAAACAAAAATCC-CAAAGGGAGGAACT--CAATCTTTCCCTGTGCCTTTGAGATGTAAA
TGTTCTATCTGGTCTCTAGGCTAGGAACTGAGGTCATTCTTATCAGTAGGGGGGAAAAAATGG-GGC-AGGACATTTGGA
ACCCAGGCAAATGAAAAATCTTAAAAGTCTTCACAGGGGCACCCGGGTGGTTCAGTCAGTTAGATGCTTGACTTCAGCTC
AGGTCATGATCTCATGGTTTGTGAGTTCAGGCCTGCGTTGGGCTCTGTGCTGACAGCTCAGAGCCTGGAGCCTGCTTCAA
GATTCTGTGTCTCCCTCTCTCTCTGCCCCTCCCCCACTCATGCTCTGTCTCTCTGTCTCAAAAATAAACATGAAAAAAAA
AAGTCTTCTCCACAAATATTAGTAAAAAGTTTAAGCCATCAGAACAGGTAACCTTAAGTTATCCCATCTTCTAAATCCAC
AATTTGGATCCAAGTGTTCTATTGTAAACTAATGAGCTCTGCATTGGTGTACCAGTTAAAATTTTTTCATGGTTAAAATT
TTAA---AATAGCTGTAAGATGTGTTTGTGTCTGTATTTATGTTTATATATGTCTAATATGTATACTGCAGATGTGTGAT
ATTTCTCT------------GTCTCTGGCTGGTACTGCCAAAATTATTTTTTTTTTAATTTTTTTTTCAATGTTTATTTA
TTTTTGGGACAGAGAGAGACAGAGCATGAACGGGGGAGGGACAGAGAGAGAGGGAGACACAGAATCGGAAACAGGCTCCA
GGCTCCGAGCCATCAGCCCAGAGCCTGACGCGGGGCTCGAACTCCCGGACCGCGAGATCGTGACCTGGCTGAAGTCGGAC
GCTTAACCGACTGTGCCACCCAGGTGCCCCCAAAATTATTTTTTTAAGGTCTATTTAATTAGTTTAAAGCAAAATAAGCA
TTTACCAAATTGAGTACTTCTAGACTTTCAGAAACATAAAATCTAACCCAAATGTTTTTCAAGTTCACCTGATCTAGGAT
AGTCTTTGGTTTAAAAAAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAAAGAGAGAGAGAGA
GAGAGAGAAAGAGAGAGAGAGAGAAGCAAGTTTAGGTTTGTTGGTTTCATTAAAACAGGCATGCATTTACAGTGA-----
--------------TTTTATTCTGCTTGGGTTTTCTAGTCAAATAGATTAAT-GTTCTGTTAC---GTTTGCCAGCAACA
AAAGTAACCTAGCATAATGC-----CTAATTTTCTTTAGTGTCTGCAAAATTTTCATGAGTAATCTAAATATGTTAAAAG
CA----------AGTGATTTAGATAGATGTAAG----------------------TAGGATAA-----------AAGTTT
CCAGGTGAA-----------------------------------------------------CTTTTCAGCGA-------
-------TGATTATGAGTATACTTACAGAGTTTCCCCAAATATTTTTGATAACT----------TGAAACTTTATAG--T
TTTCCTACATTAAGTTAAATGGTACATAGTGAACATTTAGATCACTTAATATCTAGATCATTTTCAAATAAGATAAAATA
ATGAAACATTAATGAAACATTAATTATTGAACACAGGTTTATCTACTTTTACTTTGGGTTTCTTATTGTAAAGAAACGTA
AGGTATGTGGGTCTATTAGTA---ATGTTTCATACAACATTGAGAAATTTACTGTGAGGCAGAATAT---TCTATAAATT
ATGAAGTGTATTTGTGAGTTCACCGATCCACAGAATGCTGGTGTAAG----AGTCCACAATTACATACTTCTTAGTTCTC
ACTAGGAAATAAGGACCCTGAGCTTTAAGAATTTTAATCAGTGTATGTACTTGAAACTTCTTAGAAATAATAAGGGTGAA
GGGAAACA--AGTGTGTATTAAGAGTAGGCACGGGGGGGCGCCTGGGTGGCGCAGTCGGTTAAGCGTCCGACTTCAGCCA
GGTCACGATCTCGCGGTCCAGGAGTTCGAGCCCCGCGTCAGGCTCTGGGCTGATGGCTCAGAGCCTGGAGCCTGTTTCCG
ATTCTGTGTCTCCCTCTCTCTCTGTCCCTCCCCCATTCATGCTCTGTCTCTCTCTGTCCCACAAATAAATAAATGTTGAA
AAAAAAAATTAAAAAAAAAAAAAAAAGAGTAGGCACGGAAAGTAAAATGACTGGGTCTTCCAGAATGAGAAAAA----AC
ATATAGGACAAGATCTGAATGGGTATGAAAAAAATTGTAGGCTTTTGGAAAAGGAATCTTGGGAAGAGAATTTTGCCAGT
GGTCAAGTGGGCTAATACTGGAATGGATTTAT---TTAAGGTTTCCTAAAGAGCTTTAACAGCAAAAGTACACTGGTACA
AAACTAGAATTTGATTTTCTCTCTGCTAAAAGGACAGCTTTCTCTTGGACTTTGGGTATGCTTTAGATTAGAGATAGTGA
AGGT----TTATCTT-----------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------TTATGTAATCTGCCTGG
CCAGCAAAGCTTTTTTGTTGTAACCAAAATAATTTCCGGGCGCTTCCCATGGTCTTCATCAGGTCTTGGATTACTTAAGA
AAATCCAATCTTCTCAATAGTAAAAGAGCTAAATTTTGTTCACAACTATGCAACCTTCTGAATTTGCCTTTATCATCATC
CTCTATTGTCCTTTTGGTTAAACAGATAATTAAGTATTATCTCATGATGCTCTGTGATCCTATTTAGTCAAATGTGTTCA
AATTGCTTGATGTTTTGACAACTTCCTAAAATCAAATTCTAAATGGGGGCTTCTC-CCACCTTAAAGTAACTCTGAGATT
TCCCAGAGGGTCCCTGAAAAAATTGCAAAGATTTGTCTCTCCCCTGGTAAAATATTAAACTAATTCGGTTTATTTGCTGT
TAAGGTACATAGGAAGCATTATCAAATACAAGGGATGCCTAAACCTCCTTAGTTTGTATTTACATGGATGCAGGTTATTA
ACATAAATGTTCTACAGACTGTAAGAAATTCCTAGAAATATGATGTGTCCCAATATAATGTCACCAGTCATAATTCCAGT
TAT---CTTAAAATGTTACATATAGCACAAATAACCAAATTTCCTTGTCATTTCCATTATATTGAA-CCTAACAATGAGC
ATC-TTTAAGTCTCTGGGCATCTGCAGACAGC-CACTGTCTCACTCTGATGCTTTTGCAGAAGTGAGACTCATGAAAAGG
ACCCTACCAGGAACTCCTGATCACTGACGCCACCGCCAAATTACAAGGCGTGGAAAC-TCAGGTGCATATTTCACAGCTG
AAGAAGGCCCCACCTGACATCAGGTCCTGCGCAAATGTTGGAGACCTCGAAATCAAACTGA----GAAGAGAAGCGG---
-----------------------CCAAGACCTCAGATGCAAGAGTGTTTCTTTCCATTCCTCCTTCCCTCTCT----ATC
CTCTTCTTAATTCTTACAGTACGAAGGTCTTTGTGATTCATTTGCACATATTTTGCTCTGCTCTGGCCTGAAAGATAATG
CCATGGTTCATATACTCAAGCCATTGCAAACAGGGATAATCCAACCTTGACACGACTGCTGGATTTGCCATAATGCCGAC
AATCCTGTAGTTCTGCCCATCACACACGTCTCCCTGATTGCCAAATGCTTCAGTTTCTCTGGAACTGAGTCAGCCCCCTC
TCTATTAAGTCAGGCTCCTCAACCCCTGGGGGTCTATTTCCCTGCCTCAGTTTAAGAACCCCAAACCCAGGGAACATTGT
GTCCAGGCTCTGTACAAAGAAAGGGACACAAAGCAAGGGTAACTGGAACAAAAGTGCCTGTACGGTCTAGAGTCGCTTAA
ATTTCACATGCCTCCATGGCTGTCACCTTCCCAGCCTTGAGCCACAGACTCAAGCAGGCATCGCCAGAGGGCATTCATGA
CT-CCAAAATAGCTTCCTTTGGTAGCTGCTCCCCTGGCT------AAGAGTAAGTACAAATGAGGCTACTTCCAGACCTT
CACCTTAACTCTCGAAG----GTGTTGCAGAAGCCGCTGTTAAAGCCAATAGCTGCCAAC-CAAAATTCCTGGGCTCTCT
GGCCGAAGTTGTTCTTGATAATACGAGAGCCCTCGACTACTGTTTTGGCAGAGCAAGGAAGTGTCTGCACCGTGGTTAAC
GCCACTTGCCGCACTGAATGGACACTTCTGGGGAAGCTGAGCTCAGCTACGGAAGATCACAGAACCAAGCGAGCTGGCCT
AAGAAAGGGACTCCTTCAATGGGACTTGA-CTTGTTTGGTTTGTGTCTTGGGAGACCATGTCTTTGAAGTACTCCAGACA
ATAGGAATGATTCTGCGTATAATAATCATAAGA--ATCTTCCTGGTGCGCTGTGTTCTCCCACAAGCTTTAAGT----GC
AT-GTTCATGTTCGCAGCTGCTAACCGCCAAGCAAGTGAGGTCACTGGGAATGGAACATCGGAAAAGTAATGAAGAGAGT
GGCTGACGTAAAGAATGTGAACCTGAAGTCATGACCTGTGACTGAATACCAGAATCAGCAAAAAAAAAAAAAAAAAAAAA
AGTCATCACCTGTGAATACTGACAGAAATCAGCAACACTTGAGAACTTCTAAGAGGTGGCTAGGAGTAATGCTAATGCTT
TAAATTTGGATCACATCTCTCAGGTTTAGTCTGATCAAAAGAGGGGAATTGTTTTTTTCTGGTTTTGTTTTTAATTTTAG
TTAACATACTGTGCAATACTGGTTTTAGGAAGAGATTTCAGTGA--TTCATCGCTTGCATACAACACCCAGTTCTCATCA
CAAGTGCCCTTAGTCCCCGTCACCCATCTAAGCCCAT-CACCTACCCACCTCCCTCCACCAACCCTCAGTTTGTTCTCTT
ATTGTTTTCTTTTTCTTTTAACATTTATTTATTTTTGAGAAACAGAGAGCATGAGCAGGGGAGGGGCAGAGAGAGAGGGA
GATACAGAATCCAAAGCAGGATCCAGGCTCTAAGCTGTCAACAAAGAGCCTAATGCAGGGCTCGAACCCACAAACCGTGA
GATCATGACCTGAGCCAAAGTTGGGCACTTAACCAACTGAGCCACCCA-AGTGCCCCTGTTCTCTATTATTAAGAGTCTC
TTATGGCTTGTTTCCCTCTTTTCTTCTTTCTCCCGTTCCCATATGTTCATCTGTGTTCATTCTTAAATGTGACATATGAA
TGAGATCATAGGATATTTGTCTTTCTCTGACTTATTTCACTTAGCATAATGCACTCTAGCTCCATCCATGTCCTTGCAAA
TGGCAAGGTTTATTTTTAACGGCTGAGTAATATTCCATGGTGTACATATTCCATACCTTCTTTATCCATTCATCAGTCAA
TGGACATATGGGCTCTCTCCATAGTTTGGCTATTGTTGACGATGCTGCTATAAAAATCAGGGTTCATGTACACCTTTGAA
TCTGTATTTTTGTATCCTTTGGGTAAATACCTAGTGGTACACTTGTTGGATCATATATGGTAGTTCTATTTTTAACTTTT
TGAGGAACCTCCAGACTGTTCTCCGGAATGGCTGCACCAGTTTGCATTCCCACCAGTGTAAGAAGGTTCCCCTTTCTCCA
CATCCTCGCCAACACCTGTTGCCTCTTGTGTTGTTAATTTTAGCCATTCTGACAGGTGTGAGGTGGTATCATCATGGTTT
TCATTTGTATTTCCCTGATGATGAATGACGTTGAGCATCTTTTCATGTGTCTGTTAGCCATCTGGATGTCTTCTTTGGGA
AAGTGTCTATTCATGTCTTCTGCCCATTTCTTCACTGGATTATCTGTTTTTTGGGTGTTGAGTTTGATAAGTTCTTTACT
GAATTTTGGATACTCACCAAGA-GGGGAAATGTTAAAAATTAAACAT------TTAAAAATTAA---AAAACA-------
---------------AGTTTCTGCTCTCCCAAAAATGGAATCTCAAGCCAATCAATGAGGAATCACCTCATCAGCACTAA
TTAGGTAGTTTTCCTGATAGACCCCTGCCATCCCCTAAAGGAAGGTGACCTTGTCTGGCCAATCTGCTTTTTTGTCTAGT
ATAATTTCTTTGTTCTTCTTCCCTTCTCCCTATAAAAGTCTTCCATTTTGTACAGCTCCTCAGAGGTCCTTTCTATCTGT
GGGACAGGATGCTGCCTGGTTCACAAATCGTTGAATAAAGCAAATTAAGATCCTTAAAAAACTTACTCAGTTGAATTTTG
TTTTTTAACA---ACAC---CATGAAGAGAAACAGCTACTCCTAA------ATGACTCA-------ATCAACAGCGCATG
CCCCAAATA
>Manis_javanica
CAAACAGGCTG-GAGC----------------AGGATT--------------CAGCCCACGGG-------CTATA-TTTG
CCAACCCCAGCTCC---ACAC---TGTTAAAAAC----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AAGACAACA------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------GGCCCAAAATGGAGTCACTTGTGCTAAGTCCCACATCACCAAACC
AAGACTTAACTTACTCAGAG-TTTCAGCTCTCCCAGAAATGGAATCTTAAGCCAGTCAATCAGGAGTCACCTGGTCAGCA
T----TAACTAGGTAACATGCCCTTCGGAC------------------CCCTGTCCTC----CCCTAAGGAAAAGTGACC
TCGTCATAACCAACCCACTTTTTTTACCTAGTGT------CCCTGGCCCCCCCTCTTCTGCCTGTGAAAGCCTTTCATTC
TGTACAGCTCCTGGGAGCTCCCCC--ATCTGCTAGACGG-ATGCTGCCTACAT---GAATC-GTTCAACAAAGCCAGTAA
GATCTTCAAAGT-----TTACTCAGTTAAAC-------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------TGT
CTTTT-AACA----------------------------------------------------------------------
--------------------------------------------------------------------------------
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-------------CCAC---CATGAAGAGAAACAGATAGTCCCAAATAA--GTGATTCT-------GTCACCAAGGCA--
-CCAAAATA
>Sus_scrofa
GGCTGGGGCTGGGAGTGGAGGAGGGAAGCAGGGGGATT--------------TGGCCCTCAGG-------CCAGAGTTTG
CCAAGCCCCACTCT---GGGC---TGTTAAGAAC----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AAGACCACA------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------ACCCCAAATGGAATCACTCACGCTAAGCCCCACATCAACTAACC
AAGACTTAA-TTA----TAG-TTCTG-CTCTCCCAGAAATGGAATCTCAATGCAGTGGCTCAGGAATGGCCTGACCAGCA
A----TAATCAGGCCCCCTGCCTGGTCGAC------------------CCCTGCCACCCCGTCCCCTACAGAAAGTGACC
CTGTAGTCACCACCC----TACTTCATTCAGTGTAACTTCCTTGTTCCTGTTCCCACCTGCC-ATAAAAGTCTTTCATTC
TATTCAGCTCCTCCAAGCTCCTCTCCCTCTTCTGAGGG------------ACTCACAGATCTGCCAGATAAAGTCAACGA
AATCTTTAACAG-----TTACTCAGTTGAA--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TGTTAT
TTTGT-AACA----------------------------------------------------------------------
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-------------ACAC---TGTGAGGAGACACAGATATCCCCAACGC---AGGCTCCC-------AAGGTCTATGCA--
-CCAAAGCA
>Tursiops_truncatus
AGACCAGGCTGGGAG-----------------CGGGTC--------------TGGCCCCCAGG-------CCAGAGTATG
CCACCCCCTGCTCT---ATGC---TGCTAAAAGC----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AAGACCATG------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------GCCCCCAAGTGGAGTCACCTGTTGTAACCCT-ACGTCACCAAATG
GAGACCTCA-TTA----CAGTTTCCG-CTCTCCCAGAAACAGAATCTTAACCCAGTGGGTCAGGAACCGCCTGACCAGCA
C----TGGT-----CAGCTGCCTGGTAGAC------------------TCCTGCCACCCGTCCCCTACAGGAAAGTGACC
CTGTAATAACCCACC----CACTCTGTCCAGCACCACGTCCTTGTCCCTGCTCCCTTCTGAGGATGAAAGTCCTTCATCC
-GTCCAGCTCCTCGAGGCTCCTCTCCATCTGC-AGATGGGACACTGGCCGATTCATGAGC--GCTGAACAAAGCCAGTAA
GATCTCTAACAC-----TTACTCAGTTGGA--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TTTTAT
TTTTT-AACA----------------------------------------------------------------------
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-------------ACAC---CATGAACAGAAATAGACGTTCCTAAATAC--GTGATTCTATCT---AACATCGGTACG--
-CCAAAATA
>Equus_caballus
GGAACAGGCAGGGAGC----------------TGGATC--------------TGGCCTGGGGG-------CCGTAGTCTG
CCAAGCCCTGCGCT---GCAC---TGTTAAAAAC----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AAGACAACA------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------GAACCAAAATGGAGTCGCTTATGCTAA-CCCCACGTCACCAAACT
GAGCCTTAG-TAT----CAGCTTCAG-TACTCGCAGAAATGGAATCTTAAACCAGTCAGTCAGGAGTCACCTGGTCAGTA
C----GAGTGAGGTCACC-GCCTGACTG--------------------ACTGACTGGC----CCCCAAAGGAAAGTGACC
T-GCAATCACCAATCTGC-TTTTTTCCCTAGTATAACTTCCTTGTTCCTGCTCCTTTCTGCCT--AAAAGTCTTTCATTT
TGTACAGCTCCTTGGAGCTCCTTTCTGTCTGCTAGATTGGATACTGTCCAATTCATGAATC-ACTGAATAAAGCCAAGAA
GATCTTTAAAAC-----TTACTCGGTTGAA--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TTTTGT
TTTAT-AACA----------------------------------------------------------------------
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-------------ACAT---CACGAAGAGAAATAGCTATTCCTAA------ATGATTCT-------ATCATCAGTGAG--
-CCAAAATA
>Ceratotherium_simum
AGAACAGCCTGGGAGC----------------TGGGTC--------------TGGCCCGCAGG-------CCATAGTTTG
CCAACCCCTGCTCT---ACAC---TGTTAAAAAC----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AAGACAACA------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------GGCCCAAAGAGGAGTCGCCTATGCTAAGCCTCACGTCACCAAAGT
GGGACTTAA-TTA----CAGTTTTGG-CTCTCCCAGAAACGGAATCTTAAACCAGTCAGGCAGAAATCGCCTGGTCAGCA
C----CAGTGAAGCCATCTGCCTGGTAGAC--------------------CTGCCATC----CCCTAAGGGACAGTGCCA
C-------ACCAACC----C--------TAGCGGAACTTCCTTGTTCCTGCTCCCATCT--------------TTCATTT
-TGTAAGCTCCTCGGACCTCCTTTCTACCTGCTAGATTGGACGCTGTCCAATTCATGAACT-GCTGAATAAAGCCAGTAA
GATCTTTAAAAT-----TTACCCAGTT-----------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------TTGT
TTTTT-AACA----------------------------------------------------------------------
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-------------ACAC---CATGAAGAGAAATAGCTATTCCTAAATAC--ATGATTCTATCT---ATCATCAGTGCA--
-CCAAAATA
>Myotis_myotis
AG--CAGGCTGGGAGC----------------CGGGTT--------------TGGCCTGTAGG-------CTGTAGTTTG
TCAACCCA-GCGCT---GCAC---TGT--AAAACGGGTGGGGAACCTTTTTTCTGCCAAGAGCCACTGGATATTTATAAC
ATCATTTGAGGGCCAAAAATTATCAACTTAAAAATTAACCCGCTGTATTTGGTCAAACACTTAATTAACTCACCCCTGAT
GCCTTGGCAGGGCCAGACCACATGATTTCTCGGTCCTTATACAGCCCTCCGGCCAGCTGTTCCCCGCCCTGCTGTAACAC
ACACAAAGACAACA------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------GGCCCTACATGGAGTCACTCGTGCTAAGCCCCAGGTCATCACACT
GAGACTTA---------CAGTTTCAGCCTCGCCCAGAAGTGGACTCTTAAACCGGTCCATCAGGAGTCCCCTGACCAGCA
C----CAGCGAGGACATCTGCCTGGTGGGT------------------CCCTGC-AT-----CCCTGAAGGAAAGTGACC
TTGTCACAGTCAGCC----CATTTTTGCCAGAATGACGTCC---TCTCCGCTCCCTTCTGCCC------GTCTCTCCTCT
TGCACAGCTCCCTGGAGTTCCTTTCTGCCCACT--ACGAGGTGCTGACTGATTCAGGAGTC-ACTGAATAAAACCAGTAA
GATCTGTAAAATAAATATCACTCACTCGAA--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TCTGGT
TTTTT-AACA----------------------------------------------------------------------
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-------------AAAC---CATGGAGAGAAACAGATATTGTTAAATAA--ATGATTCTATCCATCATCATCAGTGCA--
-TC-AAATG
>Rousettus_aegyptiacus
AAAACAGGCTAGAAGC----------------CGTGTT--------------TGGTCTGCAGA-------CCACAGTTTG
CCAACCCCTGCTCT---ATAC---TGTTAAAAAC----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AAGACAACA------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------GGCCCAAAATGGAGTCACTTATGCTAAGCCCCACATCACCAAATT
GAAATATAACTTAATTACAGCCTCAGCTCCTCCCAGAAATGGAACCTTAAACCAGTTAATCAGGAATCACCTGACCAGCA
C-----TGGGAAGGCAACTGCCTGGTGGAC-------------------CCTGCCATC----CCCTAAAGGAACGTGACC
TTGCCACAACCAGCC----CACTT--GCTAGTATAACATCCTTGTTTCTGCTCCCTTCTGCCT--AGAAGTCCTTCATTT
TGCAGAGCTCCTTGAAGCTCCGT-CTATCTATTAGACGGGTCGCTGCCCAATTCATGAATT-GTTTAATAAAGCCAGTAG
GATCTTTAAAAT-----TTACTCAGTTGAA--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TTTTAT
TTTT--AACA----------------------------------------------------------------------
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-------------ACAC---CATGAAGAGA---AGATATTCTGAAATAC--ATGATTTT-------ATC--CAATGCA--
-ACAAAATA
>Condylura_cristata
AAAATCAGCTGGGGAC----------------CAGATT--------------AGAACCATGGA-------CGAGAGTTTG
CTAACCCCTGCTCT---GTAT-----------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------CA---GAGAAAAATGATACTCTTAA------ATGATTCT-------ACCATCAGTGCA--
-CCAAAATG
>Sorex_araneus
AAACCAGAGAGAGGGT----------------CGAATCACCCCAGGGTGGGATAGCCAACATGGGCGGCCCTGGCATGTG
CCAAGCCCTGCTCT---GCAC-----------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------AGTTAAGGGAAATGGGTATCAGGAAGAAATGATGATTCT-------GTCACCAATGCA--
-CCAAGATA
>Homo_sapiens
CAAACAGGT---GAAC----------------TGGATT--------------TGGTCCATGGG-------CCAC--TTTG
CCAACCTCTACTGT---A-AC-----------------------------------------------------------
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--------------------CACAAAGAGTAACAGATATTCCTAAATCA--ATTACTGT-------ATCATCAGTGCA--
-CCAGAATG



Dog34_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
-------GTTAATTAGCTTGATTGTGGT-AATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAA
ATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------
>Canis_familiaris
ATCAAAAC---CACAAATTTTAAAACATG--ACAATGT-----CC-AATTTCGCAAATTTC---AAAAACTCTCAGCTGA
ATCT----------------CTTGTGGT-AATCATTTCACAGCATATGTAAAT--CAA----TCATGCTGTATACGTTCA
ACTTATACA-TTAATGTATGTTAATTATTTCTTACTAAAACTGA---------AAAAAA-----CTCAACAG-TTC----
---TTGTCTAAGTGTAGGC---TTTGACATTCCAATACGACACAGTATATGGT-TCTTACAGACAACTAA------TTCC
TACCTTTCCTCTCAACCCAATATTCACATTCC--------CTTCCTTAACTTAAAAAAAAAAACAAAAC--AAACAAAAA
AAACTGTATGCTTCTTTCATACAGAATGTTTCTCTCCTCATCCATTCCATAGGATCGTCACCTTCCAGAAAGCCTTCGCT
TCCTTTCCTTTCTTTAAAATTTTATTCATTTGATTTGGGGGGGGGGGGGGGAGCACAGGCAGGCAGGCAGGCAGGGGGAG
AGGGAGCAGCAGACTCCCTGCTCAGGGAGCCTGACATGGAGAGTTCATCAGTCCCAGGACTCTGGGATGACCTGCCTTCG
GGCTGAGCCATTCAGGTGCCCCAAGCCTTCACTTTCTTGCTTTACTCATCAAACATACATAATCACTAGA----------
----GTAGGTAAAATGCC-TCTTCTGTGAAC
>Felis_catus
ATCAAAATAAACACAAGTTTTAAAACATGAAAACATGAAAATGTCCAATTTCTCAAACTTC---AAAAAATTTGGGCTAA
ACCT----------------AGTGTGATAAATCATTTCACAGTATATGTAAAT--CAAACCATCATGCTATACACTTCAA
ACTCATACC-TTAATGTATGTCAATTTTTTCT------------------------------------------------
----------------------------------------------------T-TCTTACAGACA----A------CTAC
TCCATTTCTCTTCAATCTACTATTCACATCCCTTCCTTAACTTTTTTTTTTTTAA-------------------------
---TTATGCGCTTCCTTCATACAGAATGTTTCCCTCCCCATCCATCCCACAGGATCATCACATTCCACAAAACCTTTGCT
TTCTT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------GCTCCATTCACCAACCATACACAATCATTAGA----------
--GAGTAGGTAAAATGCA-TCTTCTCTGAAC
>Sus_scrofa
ATGAAAATCA--ACAAGTTCTAAAACATA-AAAAATGT-----TCAAATTTCTCAAACTTT---AAAAATTCTCCACTGA
ATCT---------------AATTGTAGC-AATCATATC-AGTTATGTGTAAAT--CAAGCCATTATGCTGTACCTCTAAA
ACTTAAACA-GTGCTGTGTGTACATTAGTTCTCAATAAAACCAGAAAAAA---AGCCCAC----CTCAATGG-CACCT--
-CTTTTTCAAAATACAGGCTTGTTTGACACTCCCATTCCACATTTTAGATGGC-TTTTACAGACAATT-A------CTCC
CACATTTCATTTAAATCTACTATTCACTTTCC--------CTTCCTTGCCTTTAAAAAA--ACCCCAA---AAAAACAAA
AACCTATGTGCTTCCTTTATACAGAATGCTTCTTCCTACAACCATTCCATAGGATCATC-CATTCCAGAAGGACTTCACT
TGCTT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------GCTCCAGTCATTAATCATACACAGTCATTGCA----------
--GACTAGGTAAAATGTC-TCTTTTGTAAAC
>Bos_taurus
CTCA-------CACAAGTTCTAAAACATG-AAAAATGT-----TAAAATTTCTGAAACTTT---AAAAATTTTCAGTTGA
ACCT----------------A---TGGG-AATCATTTC--ATAATACATAAAT--AAAACCGTTATGCTGCACAACTTAA
AATTACACA-GTGATATATGTAAGTTATTTCTTAATAAAAGCAGAAAAA----AAAAAT-----CTCGATGG-CTCCT--
-CTTTACCTAACTACAGG----TTTGACACTCCCATTTCACATTTTAGATGGT-TCTTATAATTAGTT-----------C
TACCTTTCTTTTCAATCTAGTATTCAGCTTCC--------TTTCTCTGCCTTTAAAAACAAAATCAAACAAACAAAAAAC
AATGGATGTGTTTCCTTTGTATAGAATGTTTCTCCCCACATTCATTCCACAGGATCATC-TATTCCAGAAAAACTTTGCT
TTCTT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------GCTACACTCATCAATTATACACAGTCATTACA----------
--GACTAGGTAAAATGTT-TCTTCTGCAAAC
>Myotis_myotis
ATCAAATTAAACACATATTTTAAAGCATGAAAAAATGA-----TCGAAATTCTCAAACTTT---CAA--TTCTTAGCTGA
ACCT----------------ATTGC-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------TGTTTCTCCCCACATCCATCCCACAGAATCATC---TTTCTCAAAGCCTTTGCT
TTCTT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------G------------ATCAGTCTTAGTCATTAGA--------GA
GTAGATAAATAAAATGCC-TCTTCTGTAAAC
>Rousettus_aegyptiacus
ATCAAAACAAACACAAGTTTTAAAACTTT-GAAATTGT-----TCAAATTTCTCAAACATT---AAA--TTCTCAGCTGA
ACCT----------------ACTGTGGT-AATCATGTCACAAGACATGTAAAT--CAAACCATTACGCTGTATGCCTTAA
ACTTATACA-GTGATGTATGTCAAGTTTCTC-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------AATAAAATGGC-ACTTCTGTGAAC
>Equus_caballus
ATCAAAATAAACACAAGTTTCAAAATGTG-AAAAATGT-----CCAAATTTCTCAAACTTT-------------------
--------------------------------------------------------------------------------
-----------------------------------------------------AAAAATT----CTCA-CTGTCTCCT--
-TTTTGCATAAGTACGAGCTCATTTGACACTCTCATACCACACTTTATATGGT-TCTTACAGACAACT-A------CTCC
TACCTTTTCCTTCAATCTACCATTGAACTTCC--------CTTCTTTGCCTTAAAAGAA-------AA---AAACAAAAA
AACCTACGAGCTTCTTTTATATAGAATGTTTCTCTCCGAATCCATCCCACAGGATCATC-TCTTCTAGAAAGACTTCACT
TTGTT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------GTGCCACTCATCAATCATACACTGTCATTAGA----------
---------------GCC-TCTTCTGTGAAC
>Ceratotherium_simum
ATCAAAATAAACACAAGTTTTAAAATGTG-AAAAATGT-----TTAAATTTCTCAAACTTT-------------------
--------------------------------------------------------------------------------
-----------------------------------------------------AAAAACT----GTCAACGG-TTCCT--
-TTTTGTCTAAGTACAAGCTCATTTGACACTCCCATACCACACTTTATATGGT-TCTTACAGACAACT-A------TTCC
TACCTTTCCCTTCAATCTACTATTCACCTTCT--------CTTCCTTGCCTTTAAAAAA-------AA-------AAAAG
AACCTATGTGCTTCCTT-------AATGTTTCTTCCCCAATTCATCCCACAGGATAATC-CCTTTTAGAAGGCCTTCACT
TTCTT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------GCTCCACTCATCAATCATACACAGTCATTTGA----------
---------------GAC-TCTTCCGTGAAT
>Condylura_cristata
ATCAAAATAAATACAAATCTTAAAACATGAAAAAAAAA-----T--------TCAACCTTA-------------------
--------------------------------------------------------------------------------
-----------------------------------------------------AAAAACT----CTCAACGG-TTCCT--
-CTACTT-----GACGTTTTTCTATGACATTCCCAAGGCATACTTTACCTGGTGTTTTGAAGACAAGACAAAATTCTAAC
TACCGTTCCCTGCAATTTAATATTCACCTTCC--------CTTCCCTGTCTTCTAACAA------------CCAAAACAA
AACCTATGTGCTTCCAGT-CATAGACTGTTTCTTACCACATCTATCCCA----------------------GTCTTCAAT
TAC-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------CGTTCCTTAACCATAGTCATTAAA----------
--TACCAGATTAATTGCCTTCATCCACAAGA
>Solenodon_paradoxus
ATCAAAACAAATACAAGTTT-AAAAAATGAAAAATATT-----CAAATTATCTCAAACTTA-------------------
--------------------------------------------------------------------------------
-----------------------------------------------------AAAAAAAAAAATTCAACAG-CACCT--
-CTTTGTTGAATGACAGGTTTATCTGACAATACCACA-CACATTTTATATGAT-TCTTATATACAAGT-A------CTTC
TA----TCCTTTCAATCTACCATTCACCATCC--------CCTTTTCAAGTTAAAGACA-------AA-------GCAAA
GAT----GTACTTCCTTTATACACAATGTTTCACCTCAGAATGATCCCAAAGGATCATC-CTTTCCAGAAAGTTCTCACT
TTCTT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------GCTCCAATCATGGGT----CACAGTAATTAAACATCAATGCT
TCGTAAAAGTCAAATGTC-ACATCTATAAAT
>Cavia_porcellus
ATCAAAATAGATACAATCTTTTCATTGTG-AAAATTTT-----TTTGGTTTTTCAAAATTA-------------------
--------------------------------------------------------------------------------
-----------------------------------------------------AAAAA-T----CTCTA----TTTCT--
-CTTTGTTCAATGACTGGGTTACTG---ATACCTATACTATAGTTTAAACAAT-TGTTACAACTA-----------CTAC
TCCTGTTTCCTTTAAAC----ATTTTCATTTC--------TTTCTTT---------------------------------
-----------TTCCTTAACACAGAACATTTCTCCT---ATCCATTCAATC---------CTTTACAGAGAACTTTTCCT
TTCTT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------G--------ATTGCTCAAAACCACCCAATATA----------
CAGATCAGATCAAATGTC-TCTTCTGTAAAT



Dog36_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------------ATGAATAAGTTCTGGAGATCTAATGTACAGC--------------ATGGTGACTATAGTTAATAAT
ACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTC---TCACCACACACAAAAAA----ATGGTAA
CTATGTGAGGTGATGGATATGTTAATTAGCT---TGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCA
CGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAAAAAAAAA------------------
---------------------------------------------------------------
>Canis_familiaris
CACTTGTTTACCTTAATAAACAAACCTTCCTCCTGCTAATA--CTAACATCCTTTT---AAAACACAACCC---TGTAAA
CTTGCAACTAGTAAATAAGTAAGCGCTAGAGATCT-CTTTACGAC--------------ATAGTGATTATAGTCAACAAT
ACTGCATTATAAACCTCAAAGTTGCTAAGAGACTAGATCTTAATTGTTC---TCAAAA--CACAA--------ATGATAA
TTATGTAACATGATAAAAGTATTAGCTAACA---CTACTATAGTAATCATATTGTAATATGGAAGTGTATCAAACCAACA
CATTGCATACCTTGAATCTACACAG-TTTTATTTGTCCATTATATCTCAATTAAAAAAAA----------AATCTACAAC
CC---T--AGGGTT-ACAAT----GTTGTTAATCTCTGCCTATTTGCTC-ACCCACCAAATAC
>Felis_catus
CATTTGTTTGTCTTAATAAACAAACCTTCCTCCTGCTAACA--CTAACATTCTCTT---AAAACTCAACTC---TATAAA
CTTCCAACTAGTAGATAAACAAGTCCTAGAGATC-GATATGCAAC--------------ATAGTAATTACAATCAACAAC
ACTGTATTATAAACTTCAAAGTTGCTAGGAGACTAGGTCTTAATTGTTC---TCAACAGGCACAA--------ATAATAA
TTATGTGACATGATAAAAGTGTTAG-TAACA---CTACTATAGTAATAAT-----AATATGTAAGTGCATCAAACCATCA
CGTGGTATATCTCAAATCTATGCGA-TGTTATATATCAATAACATCCCAATTAAAAAA------------AAAACACAAC
TC---T--AGGGTTTACAAT----ATTAATGATCTCTGCCTCTTTGTTC-ACTCATCAAAAAC
>Manis_pentadactyla
CATTTGT----CTTAGTAAATAAACCTGCCTCATGCTAATA--CTAACTTCCTCTT---AAAACATAGCTC---TATAAA
CTTACAACTAGTAGATAAGTAAATTCTGGAGATCTAATGAATAACTACTGTGTTAAAATACAGTGAT----ATCACCAAT
ACTGTATTATAAATTTTGAAGTTATCATGAGACTAGATCTTAATTGTTCTATTTATTACA-ACAAAGAA----ATACTAA
TTATGTAAAATAATAAAGGTGTTAGCTAACACTGCTACTGTAGTAACCATAATGCAATATATAAATGTATCAAACTAACA
TTTTTTATACCTCAAACCTACACAG-TGTTATATCTCAATTACATCTCAATACCATACACACA-------CATACACATA
TG---TCCAGGGTTTACAAT----GTCACCCATCTCTGCCTCTTTGCTTTG----TCAAGGAC
>Sus_scrofa
TATTTGCCCACCTTAATAAACAAATATTCCTTTTGCTAATA--GCAAATTCCTTTT---AACACTTAA--C---TATCAA
TCTGCAACTAGTAGGTAAATAAGTTCTGGAGATCTAATGTGCAAC--------------CTAGT-ATTATAGTCAACAAT
ACTGCATCATGAATTTCGAAGTTGCTAGGAAACTAGATCTTAATTGCTT---TCAGCACACACAAAAAAAACCATGATAA
TTATGTGATGCAATAAAGGTGTAAGCTAGCT---CTACTGTAGTGATCATATTGAAATACATAAATGTATCAAACCAACA
CTTTGTACACCCCAAACTTACACAA-TGTTATATGTCAGTT-------AATTAAAAAAAAAA--------AAAAAAAACC
TC---T--AGGGTTTATAAT----GTTAACAG-CTCTGCCTC--TGTTTTGCCTATTAAAGAC
>Bos_taurus
TATTTGCTTGTCTTAATAAATAAATCTTCCTTTCGCTAATA--TTAATTTCTTTTT---AAAACATCA--C---TATCAA
TTTGCAACTGGTAGACAGAAAAGTTCTGTAGATCTAAAGCACAAT--------------GTAGTGATTATAATCAACAAT
ACTGTATAATAAAGTTCAAAG-TACTAAGAAACTAGATCTTAATTGTTT---CCAACA--CACAAAAAAAGACATGATAA
TGACGTGATGTGATAAAGGTGTCATTTAGCA---CTACTGTAGTAACCATATTGCAATTTGTAAATGTACCAAAATAACA
CTTTATATATCTCAAGCTTATGTAA-TGTTATATGTTGATT--------ATCAAAAAAAAAAAAAAA---ACACCCAAAC
TC---T--AGAGATTAT-------GTTAACAGCCTCTGCCTCTTTATTCTGCCTCTCAAGGAC
>Equus_caballus
CCGTTGTTTGTCTTAATAAACAAACCTT-CTCCTACTAACA--CTAACTTCCTCTT------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------ATGGCGCAAT
TC---T--AGGGTTT-CAAT----GTTAACAACCTCCACCTCTTTGCTCTGCCTACCAAAGAC
>Ceratotherium_simum
CATTTGTTTGCCTTAATAAACAAACCTT-CTCCTACTAATA--CTGACTTCCTCTT------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------AAGGCGTAAT
TC---T--AGGGTTT-CAAT----GTTAACAACCTCTGCCTCTTTGCTCTGCCTATCAAA-AC
>Myotis_myotis
CATTCATTTGCCTTGAGAAACAAACCTTCCTCTTGCTAATA--CTAACTTTCTCGT------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------AAAATACAAT
TC---T--AGGGTTTACAATATTAATTAACAACCTTTGCCTCTTTGCTCTACCTGTCAATGAC
>Pteropus_vampyrus
CATTCATTTGCCTTAATAAACAAATCTTCCTCTTGCTAAT------ACTTTCTCTT------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------AAAACACAAT
TC---T--AAGGTTTATAAT----GGTAACAGCCTCTGCCT-------------AGCAAAGAC
>Condylura_cristata
GTTTTGTTTGTCTTTTCAAACAAACCCTTCTCTTATTAATG--CTAATGCCCTCTT------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------AAGACA---T
TT---T--ACAGTTTACAAA-------ACTAACCTTTGCCTCTTTGCTCTG-CTAGTAAAGAC
>Sorex_araneus
CATTTGTTTGTTTAAGTAAATGAATTCTTATCTTCTTAATA--TTAATCTTATCTA------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------AACACACAAC
TC---T--A---------------GTACTTAACCTATGCCTCTTTATTATATCTAGAAGATAT
>Homo_sapiens
CATCTGTTTGTCTTAACATGTAAACCTTCCTCTTACTGGTGTTCTAACTTCCTCTT------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------AAAACACAGC
TC---T--AGGGTTTACAAT----GTT---ATCCTCTGCCT-------------ATCAAAGAC



Dog40_LINE

>L1_Carn7_
----------------------------------------------------------------------TAACNTTGTA
-TGGTGACAGATGGTAACTAGACTTATTGTGGTGATCACTTCACAATGTATACAAA------------------------
------------------------------TGTCGAATCAC--TATGTTGTACACCTGAAACTAATATAACATTGTATGT
CAATTATA-CTCAA--ATAAAAAAA-------------------------------------------------------
------------------------
>Canis_familiaris
TTTTGTCCTATGCTTTGGGTCCTCTCCTCTCCATTTCCCTAAGATCGTGGGCTTGGT---AACT-CT--------ATGTG
GTGATGG---ATGGTAAGTAGACTCAT--TGGTGATCATTTTGCAGTGTATACAAA------------------------
------------------------------TATTGAATCAT--TATTTCACACACCCGAAACTAATATAATGTTATGCGT
CAATTATATCTCAATACTAAAAAAAAAAAAAAA-------AAAACATT----AAA-ACCAAAGACAGCCTT-TGTTTCTA
TTCTCTGACGTGATGTTAGCCTTA
>Felis_catus
TTTTTTACAATGCTTTGTGTCCCCTCTTCTCCATTTCCTTAAGGTTGTGGGCTT--T--------------------GTG
GCGATGG---GAGGTAACTAGACTTACTGTGGCGATCATTTTGCGGTGTATACAAA------------------------
------------------------------TATTGAATCAC--TGAGTTGTACACCCAAAACTACTATAATGTTATAGGT
CAATTATAGCTCAATAATAAAA------------------AAAAGACT----AAA-GCCACAGAGAGCCTT-TGTTTCTG
TTCTCCGGCACTGCATTAGCCTTA
>Manis_pentadactyla
TTTTTTACTATGCTTTGAG-----TCCCCTCCATTTCCTTAAGGTCCTGGGCTT--T---GTA-ACT--------ATGTG
ATGACAG---AGGGTAACTAGACTTCCTGTTGTGATAATTTTGCAGTG-ATACATAATATCGCTGCATTAGGATATATAT
TATGATATATGATACATATTCGATATATAATATCAAAGCATTCTATT--GTATACCTGAAACTAATATAATGT-------
CAATTACACATCAATAATAAC-------------------AAAAAGCTT---AAA-GCCACAGGTAGCTTT-TGTTTCTC
TTGTTTGGCACGACCCTCACCTTA
>Sus_scrofa
TTTTTTACTATACTTTGAG-----TCCTCTCCTTTTCCCTAAGGCTGTGGGCTT--T---GTA-ACT--------GTGTA
-TGATAATGGATGATAACTAGACTTACCATGGTGATCATTTCTC-ATGTATGCAAA------------------------
------------------------------TATAAAATCAG---ATGT-GTATATCTGAAACTAATATAATGCTACATAT
CAATTATACCTCAATTATTTAAAAAAAAAGCAAAAAC---CAAAAGCT----AGA-GCTAAAGATAG--CT-TTTTTCTA
TTCTCTAGCACCACCTTGGCTTGA
>Bos_taurus
TTTTTTACTATGCTTTGAG-----TCTTCTCCATTTCCCTATGACTGTGGATTT--T---ATA-ACT--------ATGTA
-TGGTGA---TGGATAACTAGACTTATCATGGAGATCACTTCTCAATGTATACAAA------------------------
------------------------------TGTCAAATCAT--CATGT-GCACAACTGAAGCAAATATAATGCTGCATGT
CAATTATACCTCAACTTGGAAAAAAAAA------------AAAAAACT----AGA-GCTAAAGATAG--TT-CATTTCTG
TTCTCTGGCACCCCCTTGGCCTTA
>Equus_caballus
GCTTTTACTATGCTTTGAG-----CCCGCTGCATTTCCCTAAGGTTGTGGGTCT--T---AAAGACT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------AAA-GCCACAGACAGCTTT-TGTTTCTA
TTCCCTGGCACTCCCTTAGCCTTA
>Ceratotherium_simum
GTTTTTACTATGCTTTGAG-----CCCTCTCCATTTCTCTAAGGTTGTGGGTCT--T---AAAGACT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------AAA-GCCACAGATGGGTTT-TGTTTCTT
TTCTCCAGCACTACCTTAGCCTTA
>Myotis_myotis
TTTTGTACTATTCTTTGAG-----TTCACTCCATTTAACTAAGGTTGTGTGCTT--T---AAAGTCT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------AAA-GCGACAGACAGTTTT-TGTTTCTA
TCCTCTGGCACTACCTTGGCCTTG
>Pteropus_vampyrus
GTTTTTACTATGCTTCAAG-----TCCTCTCCATTTCACTAAGGTTGTGGTCTT--T---AAATCCT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------AAA-GCCACAGATAGCTTT-TATTTCTA
TCCTCTGGCACTACCTTAGTCTTA
>Condylura_cristata
TGTTATGGCAT-------------TGTATCCTGTTTCCCCACCACTGTGAATTT--T---GAAGAC--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------AAACATCAC-GAAGGGCTTTCATTTCTA
TGCTCTGCCACTACCTTTGCTTTG
>Sorex_araneus
TATTTTGCCATAGGTTGTG-----TGCTTTCCATTTCCCCATAGTTGTGTACTT--T---AAATATT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------AAA-ACCACAGATAGTTAT-TATTTCTA
TTCTCCAACACTGTCTTA-CCTTA
>Homo_sapiens
TTTTTTTCTGTGTTTTGAG-----TTCTCCCCATCTCCCTGAGGTTGTGGGCTT--T---AAAGACA-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------AAA-GCTACAAATAGCCTTTTATTTCTA
TTCTCTAGCACTATCTTAGCCCTT



Dog40_LTR

>MER34C_CF
--------------------------------------------------------------TGAAGGGGAGCAGAATTT
GCCACCCCAAAATATGCCTCTTTGGCATAAGGATTATTTTAGGCTG----------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------ATTATTTTTAAGAAACTGCAGACACAGG
AGAAGCTCTGAAAACCGAGTAGAAGTTACCCTTTTGTAAGAGACATTTACATTTA--TAAGGGAAATCTCCATTTGTAAG
GGTGTCTCCCTCTCT-----------------GTACCAGGAAGAGGAGGATGA-------------------CTCTAAAT
CTCTAGAAACTCTTATCAATGGAGAAGGCAAGGACTTAAATCTGCATAACA-----ACCTTACCCTTGTTTACTGTGCTT
TTCCTGGTAACCTCCCATAACTG--A-------------CTCCCCACCCCCAACATC-TTTTTTGTCTTTAGCTGGAGAT
-GGTATTTAAGGTGATGGCTTGGGCCATTTCGGGG----AGTTACTCAGTTTTCCTGGGTC-------------------
---------TCTCCCATGTATACAGGAGGTATACATATGTTATTAAACTTTTGTTTGTTTTTCTCCTGTTAATCTGTCTT
--ATGTCA--------ATTTGATTCTTAGACCAGCCAGAAGAACCTAGAAGGGTAGAGGAAA-ATTTT----TTTCTCCT
CAACA-----------------------------------------------------------------
>Canis_familiaris
GAAATACCTAACCAGTTTATTATTGGGATTATAGCGTTTGGGTGGTCTGTAA---CATT---TGAAGGAAAGCAGAATTT
GCCACCCTAAAATATTTCTTATTGGCATAAGAATTATTTTGGACTG----------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------AGTATTTTTAAGAAACAACAGATATAGG
AATAGCTTTGGAAACT---TAGAAGTTACTCTTTTGTAAGAGACACTCA--------TAAGGGAAATCTCCATTTGTAAG
GGTATCTCTCT---------------------TCACTAGGAAGGGAAGGAGGA-------------------CTGTACAT
CTCTAGAAAATTTTATCAATAGAGAAGGTCACTACCTAAATCTGCATAACA-----ATCACACCCTAGGTTACTGTGCGT
TTCCTGATAGCCTCCATTAAGTG--G----------CTCCTCCCATCTCCCAGCATC---TTTTGTCTTTAGCTGGAGAT
-GATATTTAAGGTGGTGGCTCATACCACCTCAGGA----AGTTACACAGTTTTCCTGGGTA-------------------
---------TTTCCCATGTATACAGGAGGTACACA---GCTAATAAACTT--GATTGTTTTTCTCCTGTTAAT----CTT
TTATTACA-------------CTGGGTATCTCAGCCA--AGAGCCTAGAAGGGTAGAGGGAA-AATTATTCTTTTCTTCC
CTACA---CTAT---ATTTTTGAATCAAATAAATGTAATG-AAATGTTT----TAAAATAAGTATATTGT
>Felis_catus
GATATATCTAACCAGCTTATCATCAGAAATATCAAGTTTAG----TTTGTAA---CTTT---C---AGGAAGCAGAATTT
GATACTGTAAAATATTTTTCTTTGGCATAAGAATTATTTTAGTCTGAGTTTTTTTAAGTTCATTTTTTTTTATTTTATTT
TTGGGAGAGAGAGAGAGAGTGGCTCTGCCAGTGCAGAGCCTGATGCAGGGCTCACATTCAGGAATCATGAGATCATGACC
TGAGCCAGAGTTGCATGCTTAACCAACTGAGCCACCCAGCGCACCTAGGCGAAGTATTTTTAAGAAACAACATATATAGG
AATTGCTCTGCAAACTGAGTAGAAGTCTCCTTTTTGTAAGAGAC----AAATTTA--TAAGGGAAATCTCCATTTGTAAA
AGTACCTTTCTCTCA-----------------GCATTAGGAAGAGAAGGATGG-------------------C-------
-TCTCAAAGCTTTTATCAATAGAGAAGGTCACAACCAAAATCTGCATAACA-----ATTACACCCTTGTTTTCTGCGCTT
TTCCTGATAGCCTCCCTTAAGTG--GCTCACTCTCCCTCTCACCCCCCACCCCCAACATCTTTTGTCCTTAGCTGGAGAT
-------------GATAGCTAAGGCCATCTCAGGA----AGTGACTCAGTTTTCCTGGGTA-------------------
---------TTTCCCATGTATACAGGAGGCATACA---GTTAATAAACTT--AGTTGTTTTTCTCCTGTTAAT----CTT
TTATTACA-------------GTGGGTGTCGCAGCCA--AGAACCTAGAAGGGTAGAGGGAAAAATTATTTTTTCCTTCC
CTACA---CTTT---ATTTTTGATTCAAATAAATGTAATA----TGTTT----CAAAATAAGTATATTCT
>Manis_javanica
GAAATATCT----CTTTTGCCATTGGTATTACACAGTTTGGGTGGTCTGTAA---TTTT---TGAAGGGGAGCAGAATTA
GCCACCCTAAAATATGTCTCTTTAGTATCAGCATTATTTTAGTCTG----------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------TTTATTTTTAAGAAACAGCAGACAAAGG
AAAAGCTCTGAAAACTTAGTAAAAGTTACCCTTTTGTTAGAGATACTTATATTTA--TAAGGGAAATCT--AATTGTAAA
A-------------------------------GTACCAGGAAGAGAAGGATGAATATAACTCTAGATTATCTAGATAAAT
CTCCAGAAACTCTTATCAATGGAGAAGGCAAAGACGTAATTCTGTATAACA-----ACCATATCCTTGTTTACTGTGCTT
TTCCTGATAGCTTCCCTTACTGGCTGCACCCCTTTCCCCCCAACCATCACTGTCATCTTCTTTTGTCTTTAGTTAGAGAT
-GGTATTTAAGGTGGTAACATGAGCCATCTCTAGG----AGTTACTAGGTTTTTCTGGGTG-------------------
---------TCTCCCATGTATGCAGTAGGTATACAT--GTTATTAAACTAATGG----TTGTCTCTTGTTAATCTGCCTT
TTATTGCA-------------GTGGGTATCTTGGCCA--AGAACCTAGAAGAGTAGAGGGGA-AATTA-TTTTTTTTCCC
CTACG---TTTT---ATTTTTGAATCAAATAAGTGTAATATAAATGGTTGGTCCCAAATAAGTATATTCT
>Sus_scrofa
GAAATACC-AGCCGTTTTATCCTTGGTATAATAGAGTTTAGTTGCTCTGTTA---CTTT---TGAGGGGAAGTTGAGTTT
GTCACCCTAAAATATGTCACCCTGAGATAAGGATTATTTTAGGC------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------TTTTTAAGAAATAGCAGGCCCAGG
AGAAGC--TGAAAAATGTACAGAAGTTACTCCTTTTTAAGAGGTATTTATACTTCATAAAGGGAAATTTATTTTTGTAAA
GGTGTCTTCCTCCAT-----------------GTACTAGGAAGCAAAAGATAA-------------------C--TAAAT
CTCTATAAACTCTTATCTAAGGAGAAAGCAAAGATCTAAATCTGTATAACA-----ACCTCATCCTTATTTACTGTGTTT
TTCCTGATAACCTCCT-TAACTG--G--------------------TTCCCAACATTTTATATTATCTTTAGATGGAGAT
-GGTATTTAAAGAGATGGCTTGGACCATTTCAGGG--------AGTTAGTTTCCTTGGGTC-------------------
---------TTTCCTAAATATATAGAAGGAATAGAT--GCTATTAAACTTCTGT----TTCTCTCCTGTTAATCTGTCTT
TTCCTACA-------------GGGCATAACTCAGACA--AGAGCAAAGAAGGGTAGAGGAA--AATTT-ATTTTTCTCCA
CTGAA---CTTT---ATTT--GAATGAAATAAATGTATTATTAATGTTT----CAAAGTAAGTATATTCT
>Tursiops_truncatus
GAAATATCTAACCATTTTATTGCTGATATAGTAGAATTTAGTTACTCTGTAA---CTTT---TGAAGGGAAGCAGAATTT
GCTACCCTAAAATATGTCTCCCGGGGATAAGGATTATTTTAGGCTG----------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------ATTTTTTTTAAGAAACAGCAGACCTAGA
AAAAGCCCTGAAAAGTGAATAGAAGTTACTCTTTTGTAAGAGATATTTACATTTA--TGAGGGAAACCTTCATTTATAAG
AGTGTCTTCCCCCCGCCCCCCACAAACCCCATTTACTAGGAAGAGGAAGATGA---------------------CTAAAT
CTCTAGAAACTCTTATCGAAGGAGAAGGCAAGGACTTAAATCTGTATAACA-----ACCTTATCCGTATTTACCG-GCTT
TGCCTGATAACCTCCCATAACTG--G----------CTTCCCACCTC--CCAACATCTTATTTTGTCTTTAGCTGGAGGT
-GGTATTTAAGGAGATGGCTTGGGCCATTTTGGGG----AGTTAATAAGTTTTCCTGAGTC-------------------
---------TTTTCCATGTATACAGGAAGAATACAT--TTTATTACACTTCTGT----TTTTCTCCTGTTAGTCTGT-TT
TTCTTACA-------------AGGCATGTCTCAGCCA--AGAACCTAGAAGGGTAGAGGAAA-AATTA-CTTTTCCTCCC
CTAAA---CTTT---ATTTTTGAATCAAATAAATGTATTATAAATGTTT----CAAAGTAAGTAGATTCT
>Equus_caballus
GAAATACCTAACCATTTTATTATTGGCATTATAGAGTTTGGATGGTCTGTAA---TTTT---TGAGGAGGAGTAGAATTT
GCCATCTTAAACTGTCTCTTTGTC--ATAAGGATTATTTTAGCTGA----------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------CTATTTTTAAGAAACAGCCGACATAAG
AAAAGCTCTAAAAACTGAGTAGAAGTTACCCTTTTGTAAGAGACATTTACATTTA--TAGGAGAAATATCCATTTGTAAA
GGTGTCTCCCTCT-------------------GTCCTGGGAAGAGAAAGATGA-------------------CTCTAAAT
CTCCAGAATCTCTTATCAATGGAGAAGGCAATGACCTAAATCTGCATGAC------AACCTTCCCTTGTTTACTGTGCTT
TTCCTGATAGCCTCCCATAACTG--G----------CTCCCCC----CACCAACATCTTCTTTTGTCTTTAGCTGGAGAT
-GGTATTTAAGGTGGTGGCCTGGGCCATTTGGGG-----AGTTACTCAGTTTTCCTGGGTA-------------------
---------TCTCCCGTGTATACAGAAGGTATACAT--ATTATTAAACTTCTGTTTGTTTTTCTCCTTTTAATCTGTCTT
TCTTTTTA------------CGGGGGAGTCTCAGCCA--AGAATCTAGAAAGGTAGAAGAAA-AGTGA-TTTTTCCCTCT
CTACA---CTTT---ATTTTTTAATCAAATAAATGTAATATACATGTTT----CAAAATAAATATATTCT
>Ceratotherium_simum
GAAATTCTTAACCATTTTATCATTGGCATTATAGAGTTTGGGTGGTCTGTAA---CTTT---TGAAGGGGAGCAGAATTT
GCCACCTTAAAATATGTCTCTTTGTCATAAGGATTATTTTAG-CTG----------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------ACTATTTTTAAGAAACAGCAGACAT--G
AAAAGCTCTGAAAACCGAGTAG--GTTACCCTTTTGTAAGAGACATTTACATTTA--TAAGGGAAATCTCCACTTGCGAG
CATGT---------------------------------------------------------------------------
----------------------------------------------------------------------------GCTT
TTCCTGACAGCTTTGCATAACTG--C------CCACCCCCGCCCCCCACCCAACATCTTCTTTTGTGTTTAGCTGGAGGT
-GGTATTTAAGGTAGTGGCTTGGGCCATTTTGAGG--------AGTTAGTTTTCCTGGGTA-------------------
---------TCTCCCGTGTATACTGGAGGTATACAT--GTTATTAAACTTCTGTTAGTTTCTCTCCTGTTAATCTGTCTT
TTATTACA-------------GGGAGAGTCTCAGCCA--AGAATCTAGAAAGGTAGAAAAGGTAGGTA-TTTTTCCTCCC
CTACA---CTTT---ATTTTTGAATCAA-TAAACGTAATACACATGTTC----CAAAATAAGTATATTCT
>Myotis_myotis
GAAATACCTAACCTTTCTATCATCGGCATTATAGAGTTTGG-TAGTCTA--A---CTTT---TGAGGGGGAACACAACTT
GCCACCCTAAAATATGTCTCTTTGGCCTAAGGATTATTTTAGACTG----------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------ATTATTTTAAAGAAACAGCAGATATAGG
AAAAGCTCTGAAAACTGAGAGGACTTTAGCCTATTATGAGA----------------TGAGGGAACTCTCCATTTGTAAG
GGTGTCTCCCTCTCA-----------------GTACCAGAAAGAGAAGAATGA-------------------CACTAAAT
CTCTACAAACTCTTATCAGTGGAGAAGCTACTGAC-------------------------------------CCGTGCTT
TTCCTGATAACCTCCCATAATTG--G----------CTTCACCACTTCCCCAATATCTTCTTTTGTCTTTAGCTAGAGAT
CTGTATTTAAGGTGGTGGCTTGGGCCGACTCAGGGAATTAGTTACTTAGTTTTCCTGAG---------------------
---------TCTTCCATGTGTAAAAGAGATATATAT--GTTATTAAACTTGTGTTTCATTTTCTCCTGTTAATCTGTCTT
TTATTACAAGGGCCAGTTAGGGGGAGTGTCTCAGCCA--AGAACAGAGAAGGGTAGAGGTAA-AATTA-TTTTTCCTCCC
CTACA---GTTT---ATTTTTGAATCA----GGTGTAATATAAATGTTT----CAAAATAAGTCTGTCCT
>Rousettus_aegyptiacus
AAAATACCTAACCATTTTATCATTGGCGTTATAGAGTT-GGGTGATCTGTAA---CTTT---TGAAGGGAAGCAGAATGT
GCCACCCCAAAATATGTCGCTTTGACATAAGGATTATTTTAGGCCG----------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------ATTATTTTCAAGAAATGGCAGGCATAGG
AAAAGCTCTGAAAACTGAATAGAAATTACCCTTTTGTAAGAGACACTTACCTTTA--TAAGGGAAATCTTTATTTGTAAA
-GTATCTGCTTCTCT-----------------GTATCATAAAGAGAAGGATAA-------------------CTCTAATT
CTCTAGAAACTC---------------------ACCTAAATCTGTATAGCATAGCGACCATACTCTTGTTTTCTGTGCTT
TG--TGATAACCTCCTCTAACTG--T----------CTCCTCCACCC-------TACATCTTTAGTCTCTAGCTGGAGAC
-AGTATCTAAGGTAATGGTTTGGGCCATCTCTGGG----AGTTACTCAGTTTTTCTGGGTCTCCCATATAAATTACCCAG
TTTTCAGGGTCTTCCATCTATATAGGAAGTATATAT--GTTATTAAGTTTTTAT--GTTTTTCTCCTGTTATTCTGTCTT
CTATTATG----------GGGGGTGGGGGTTCAGCCA--AGAACAGAGAAGTGTAGAGGGGA-AATTA-TTTTTCTTCCC
CTACA---ATTC---ATTTTTGAATCAAATAAATGTAATGTGAATGTTT----CGAAATAAGTTATTTAT
>Condylura_cristata
GAAATGCCTGA-------------------------TTTGGGTGCCT----A----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------ATTT---ATTCTTGAATCAAATAAATGTAATAGGAATACTT----AAAAATAAATATATCCC
>Sorex_araneus
AAAGCATCTATTCATTTTG-CATCAGTGTTATATAGTTGGAGCAATATGGGA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------TTTC---ATTTTTGAGTGACATAAATGCAAAATAAAAGTTT----CAAAATAA---------
>Galeopterus_variegatus
GAAATACCTAACCATTTTGTCATTGGCATTATATAGTCTGCATGGTCTGTAG----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------TTTT---A------AATCAAATAAAGGTAATATAAATGTTC----C-AAATAAATATAGTCT



Dog43_LINE

>L1_CARN7_3END
------------------------------------------------------------------------TGGTAACT
AGACTT-ATTGTGGTGATCACTTCACA----ATGTATACAAATGTCGAATCACTATGTTGTACACCTGAAACTAATATAA
CATTGTATGTCAATTATACTCAAATAAAAAAA------------------------------------------------
------------------------
>Canis_familiaris
AATTATTACATATTTTAATGAAGATAAATGTGAGAACTGCAAAGCTTATT---AAAGCATTATAGTTCT-----------
-GACTTAACTATGGTGATCATTTTGCT----GTGTATACAAATATTAAATCCCTCTGCTGTACACCTGAAAATAATATAA
TGTTGTATGTCAGTTGTACCTCAATTAAAAT----AAAGTGTTACAGTTCT---TTCTTAATAAAG--------------
---------------AAGCTTTTA
>Felis_catus
AATTATTACATACTTTAATGAAGATAAATGCGAGAACTACAAAGTGTATT---GAAGCATTGTAGTTCT-----------
-GACTT-ATTATGGTGATCATTTTGCA----GTGTTCACAAATATTAAATCACGATATTGCACACCTGAAAATAATATAA
TATTATACGTCACTTATACCTCAATTAAAAT----AAAGCATTACAGTTCT---TCCTCAATA-ATCCAAAATTGTTTAA
TTATA-----AAGGGAAGCTTTTA
>Manis_pentadactyla
AATTATTACAAAGCTTAATGAAGATAAACCTGGGAACTACAAAGGGTATT---AAAGCATTATAGTTCT-----------
-GACTT-ACTGTGGTGGCCATTTCACA----GTATATACAAACATCAAACCATTACATTATATA-CTGAAACTCACATAA
TATTTTATGTCAATTATACCTGAATTTTTAA----AAAGCATTGTAATTCT---CCCTCAATAAATCCAAAATTGTTTAA
TTATAAAAGAAA-TAAAGCTTTTC
>Sus_scrofa
AATTATTATAGGCTTTAGTGAAGATCCATCTGAGAACTGAAAAGTGTATT---AAAGCAATATAGTTCT-----------
-GACTT-ATTGTGGTGATCATTTCACACACTATATGTACAAATACAGAATCATTATGTGATATACCTAAAACAAATATAA
TGTTATGTGGCAATTATACCTCAATTTTAAA----AAAGCATTATAGTTCT---TCCTTCATAAATCCAAAGTTGTTTAA
TTATAAAAGAAAGGGAAGCTTTTA
>Bos_taurus
AATTCCTACAGATCTTAAGGAAGATAAATCTGAGAACTGCAAAGTGTATT---AAAGCATTATAGTTCT-----------
-GGC---ACTGTCATGATCATTTCTCA----GTGCATACAAATATAGAACCATTATGTGGTACACCTGAAAATAATACAA
TGTTATATGGAAATTATACCTCAATTTTTAA----AAAGCTTTAGAGTTCT---TCCTTCATAAATCCAAAATCATTTAA
TTATAAAAGCAAAGGAAGCTTTTA
>Equus_caballus
AATTATTACAGGCTTTAAAGGAGATAAATCTGAGAACTGCAAAGTGTATT---AAAGCATTATAGTTCT-----------
--------------------------------------------------------------------------------
------------------------------------------------------TCCTTCATAAATCCAACATTGTTTAA
TTATAGAAGAAAGGGAATCTTTTA
>Ceratotherium_simum
AATTATTATAGACTCTAATGAAAATAAATCTGAGAAC-------TGTATT---AAAGCATTATAGTTCT-----------
--------------------------------------------------------------------------------
------------------------------------------------------TCCATAATAAATCCAAAATTGTTTAA
TTACAAAAGAAA-GGAAGTTTTTA
>Myotis_myotis
AATTTTTATGGACTTTAATGAAGATAAATCTGAGAACTCTAAAGTGCATT---GATGCATTATAGTTCT-----------
--------------------------------------------------------------------------------
------------------------------------------------------TCCTTAATAAATCCAAAATTGTTTCA
TTTTAAAAGAAAGGGAAGCTTTTA
>Rousettus_aegyptiacus
AGTTATTACAGATGTTAATAAAGATAAATCTGAGAACTGTAAAGTTTATT---AAAGTATTATAGTTCT-----------
--------------------------------------------------------------------------------
------------------------------------------------------TCCTTAATAAATCCAAAATTGTTTAA
TTATA-AAGAAAGGGAAGCTTTTA
>Condylura_cristata
CATTATTGCAGACTTTAATGAAGATAAATCTGAAAGTTGTAAAGTATATC---AAAGCATTATAGCTCT-----------
--------------------------------------------------------------------------------
------------------------------------------------------TCCTTAACAAATCAGAAA----CTAA
TTATAAAAGAAAGGGAAGCTTTAA
>Sorex_araneus
CTTTATTACCGGTTTTAATGAAGATAAATCTGAGACTCGCAAAATACATT---GAAGCATTATAGTTCT-----------
--------------------------------------------------------------------------------
------------------------------------------------------TTC----CAAATATGAAATTGTTTAA
TTATAAAAGAAAGGGAAGCTTTTA
>Homo_sapiens
AATTATTACAGGCTTCAGTGAAGATAAATCAGAGAACTGCAAAGTGTATT---AAACCATTATGGTTCT-----------
--------------------------------------------------------------------------------
------------------------------------------------------TCCTTAACACGTCTGAAATTATTTAA
TTATAAAAGAAAGGGAAGCTATAA



Dog45_LTR

>ERV54-EC_LTR
--------------------------------------------------------------TGTTAAAAACAAGACAAC
AGGCCCAAAATGGAGTCACTTATGCTAAGCCCCACGTCACCAAACCGAGACTTAACTTAATTACAGTTTCGGCTCTCCCA
GAAATGGAATCTTAAACCAGTCAATCAGGAATCACCTGATCAGCACTAGTTAGGTAATCTGCCTGAT-AGACCCCTGCCA
TCCCCTAAAGGAAAGTAACCTTGCAATAACCAATCCAC-----------TTTTTTGCCTAGTATAACTTCCTTGTTCCTG
CTCCCTTCTG--------------CCTATAAAAGTCTTTCATTTTGTA-CAGCTCCTCGGAGCTCCTTTCTATCTGCTAG
ATTGGATGCTGCCCAATTC--ATGAATCATTGAATAAAG---CCAATAAGATCTTTAAAATTTACTCAGTTGAATTTTGT
TTTTTA-------ACA-------------------------------------------------------------
>Canis_familiaris
TTGCAAAGCGAAATTT-ATTTTCACTTTCTCACTTCTTT-GACTACAATGTT---GCAT---TGTTAAAAGAAAAATGAC
AGGCCCAAAATTGAATTACTTATGCTAAGCTCCACATCACTAAATCAAA-----ACATAATTATAGCTTAGTCTCTCCCA
GAAATGTAATCTTAAACCAGTTAGTCAGGAATAGCCAGATCAGCACTTGTTAAATAACTTACCTGGT-GGACCCCTGCTA
TGCCCAAAAAG-GAGTAACTTTGCAATAACCGACCCAC-----------TTTTTTGTATAGTATAATTCCTTTGTTCCTG
CTCCCTTCTG--------------CCTATAAAAGTATTTCATTTTGTA-CATCTTCTCAGGGTTCCTTTATTCCTGCTAG
ACTGGATGCTACCCAGTTCAAATAAATTTTTGCTCAAAG---GTCTTAAAATTTTTAATATGT-CTCAG------CTTAT
-TTTTA-------ACA---GCAT---ATACCTCTAGAGAAACTTAACTTATTTATTTTATTCCCACCTTC-ATAGAA
>Felis_catus
GTGCAAAGCCGAATTT-ATTTTCACTTTCTCA----TCT-GACTCCAATCTT---GCAT---TGTTAAAAACAAGACAAA
ATGCCCAAAATGTAGTCACTTATGCTAGGCACCCTCTCACTAAACTGAG-----AGATAATTATAGCTTAGTCTCTACCA
GAAGTTGAATCTTTAACCAGTCAATCAGGAATAGCCAGAACAGCACTACTTAGGTAATCTACCTAAT-AAATTCCTGATA
TTGCCTAAAGG------------CAATCACCAACCCAC-----------ATTTTTGCCTAGTATAGCTTCCTTGTTCCTG
CTTCCTTCTT--------------TTTACAAAAGTATTTC---TTGTA-CATCTGCTTAGAGCTCTTTTCTACTTGCTAA
GCTAGATGCTGCCCAATTCAAATACATTTTTGCTCAAAG---CACGTAAAATTTTCAATATGT-CTTAA------TTTAC
CTTTTA-------ACA---ATAT---ATACCTCTATAGCTCCTCAACATATTTATTTTATTCCCACCTTC-TTATAA
>Manis_pentadactyla
CTGCAAATCCAAATTT-ATTTTCACTTTCTCATTTCTCT-GACTACAATATT---GTGC---TGTTAAAAACAAGACAGA
AGGCCCAAGATAGAGTCACTTAAGCTAATCTCCACATCACCAAACTGAGACTTAACTTAATTACAGTTTAGATTCCCCCA
GAAACGAGATCTTAAACCAGTCAATCAGTAATAGCCAGATCAGCACTAGTTAGGTAATCTACCTGATAAGACTCCTTCCA
TTCCCTAAAGGAGAGTAATTTTGCAATAACCGAACTAC-----------TTTTTTGCCTACTATAGCATCCTGGTTCCTG
CTCCCTTCCT--------------CCT------GTCTTTCATTTTGTA-CAGGTCCTTGGAGCTCCTTTCCATCTGGTAG
ATTGAATGCTGCCTGATTTGAACTGATTTTTGTTCAAATAAACTCTTAAAAACTTTAATATGC-CTCAG------TTCAT
CTTATA-------ACA---GTAT---ATGCCTCTAGAGCACCTAAACACATTTATTTTTTTTACATCCTCTTTATGG
>Sus_scrofa
TGGAAAAATCAAATTT-ATTTTCACTTTCTCACTTCCCT-GAGTACAATGTT---GTGC---TG-AAGAAAGAAGACAAC
AGGCCCCAAACAGAGCCACTTATGCTAAACCCCATGTCACAAAATCAAG-----ACTTAATTACAGTTTTGGCTCTCCCC
AAAATGGAATCTTAAA-CAATGAATCAGGAATCATTTGATTAGCAAAAGTTAGGTATTCTTCTGAAT-AGGCCCTGGCCA
TCCTTGAAAGAAAAGTATCTTTGCAATAACAAACCTTC-----------TTGTTTTCCTAGTAAAATTTCCTTGTTCCAG
TTCCAATCTG--------------------------------TTTGTA-TGATTCTTCAGAGCTCCTTTCAATCTGCTAT
ATTTGATGCTGCCCAATTCAAATCAATTGTTGC-CAAATAAACGCTTAAAATTTTTAATATGA-TTCAG------TTGAT
CTTTTA-------ATA---ACAT---ATACCTCTAGAGCTCCTCAACATATTTATTTTATTTCCATTTTC-TTATAG
>Bos_taurus
CTGAAAAATCAAATTT-ATTTTCGCTTTCTCAGTTCTCT-GACTACAATGCT---ATGT---TG-TAAAAACAAGACAAT
AGCCTTGAAA--------CACATGGTAATCTCCATGCCATGAAACCAAGGCTTAACTCCATTACAGTTTAGA-TCTCCCA
GAAACAGAATCTTAAAATA-TGAATCAGGAATCATCTGACCAGCACTAGCTAGGTAATCTTCTGAAT-AGACTCTGACCA
TTCCTGAAAGAAATGTAACTTTGCAATAACCAATCCACTTATTTATTTATTTTTTACCTAGTAAAATTTCCTTTATTCTG
CT----TCTG--------------CTTGTAAAAGTATT--GTTTTGCA--AAATCCTCAGAGTTCCTTTCAATCTTCTAT
ATTTGAACATGCCCAATTCAAATCAATTTTTGCTCAAATAAACTCTTACA--TTTTAATATGA-TTTAG------TTGAT
CTTTTATTAAATAACA---ACAT---ATAATTCTAGAGCACCTCAGTATATATGTTTTATTTCCACCTTC-TTATAG
>Equus_caballus
CTGCAAAACCAAATTT-ATTTTCACTTTCTCACTTCTCT-GACTATGACGTT---GTAT---TGTTAAAGACAAGAAAAC
AAGCCCAAAATAGTGTCTCCTATACTAAGCCTCATGTCACCAAACTGAG-----ACTTAATCACAGGTTCAGCTCTCCCA
GAAATGCAATCTTA----AGTCAATCAGGAATGGCCTGATCAGCACTAGCTAGGTAATCTGCCTGAT-AGACTCCTGCCA
TCGCCTAAAGGAAAGTAACTTTACAATAACCAACCCAC-----------TGTTTTGCCTAGTGTAACTTCCTTATTTCTT
CTCCGTTCTG--------------CCTATAAAAGTCTCTCATTTTGTA-CAGCTCCTTTGAGCTCCTTTCTTTCTACTAG
GTTGGATGCTTCCTGATTCTAATCGATTTTTGCTCAAAG----TCTTAAAACTTGTAACATGC-CTCAG------TTTGT
CCTTTG-------ACA---GGGT---ATACCTCTAGAG---CTTAACATACTTATTTTATTTTCATCTTC-TTATAG
>Ceratotherium_simum
CTGCAAAGCCAAATTT-ATTTTCACTTTCTCACTTCTCT-GACTACAACATT---GCAT---TGTTAAAAACAAGACAAC
AGGCCCAAAACGGAGT--CTCACGCTAAGTCCCAAGTCACCAAACTAAG-----ACTTAATCACAGTTTTGGATCTCTCA
GAAATGGAATCTTAAATCAGTCAGTCAGGAATTGTCTGATCAGCACTAGTTAGGTAATCTGCCTGAT-AGACTCCTGCCA
CTCCCTAAAGGAAAGTAACTTTGCAATAACAAACCCAC-----------TTTTGTGCCTAGTATGACTTCATTATTAGTC
CTCCATTCTG--------------CCTATAAAAGTCTTTCATTTTGTA-TAGCTCCTCAGAGCTCCTTTCTTTCTGGTAG
GTTGGATGCTTCCCGATTCCAATCAATTTTTGCTCAAATAAACTCTTAAAATTTTTAATATGC-CTCAG-------TTGT
CTTTTG-------ACA---GCAT---GTACCTCCAGAG---CTAAATATATTTATTTTATTTTCATCTTC-TTATAG
>Myotis_myotis
CTGCAAAACCAAATTT-ATTTTCACTCTATCACTTCTCT-GACTACAACGTT---GCAT---TGCTAATAACAAAATAAT
GGACATGA-ATGGAGTCACTTATGCTAAGCCTAAAGTCACCAAACTAGG-----GTTTAATTATGGTTTCAGCTCTCCCA
CCAATGGAATCTTAAGGCAGTCAATCAGGAATCACCTGATCTGCCCTAGTTAGGTTATCTGCCTAAT-AGATCCTTGATA
TTCTTTAAAGGAAAGTAACTTTGCAGTAACCAATCCA------------TTTTTTGCCAAGTATAACTTCCCCATTTCTG
TTTCCTTCTGTCTATAAAAGCTTTTCTATAAAAGCTTTTCATTTTGTACCAATTCCTCAGATCTTCTTTTTATCTGATAT
ATTGGCTGCTGACTTTCTTGAATAGATTTAGGCTCAAACAAACTC--AAAATATTTAACGTGC-TTCAGT--GTTGTTGT
TTTTTA-------ACA---GCAG---AAACTTCTGGAATTCCTCAACATATTTATTTTATTTCCATCTGC-TTATAG
>Rousettus_aegyptiacus
CTGCAAAACCAAATTT-ACTTTCACTTTCTCACATCTCT-TACTACAATGTT---GCAT---TGTTAAAAACAAAATAAC
AGGCATAAAATGGGGTCACTTATGCTAAGCCCCACATCACCAAACTGAC-----ACCTAATTACAGTTT-GGCTCTCTCA
GAAATGGAATCTGAAACCAGTCAAACAGGTCTGAGTCAAACAGCACTAGTTAGATAATCTGCTTGAC-AGACCCATGCCA
TCCCCT-AAGGAAAGTAATTTTGCAATAACCAATCC-------------TCTTTTGCCAAGTATAACTTTCCTGTTCCTG
CTCCCTCACG--------------TTTATAAAAGTCTTTAATTTAGTA-CAGTTCCACAGATTTCTTTGCTATGTGATAG
ATCAGCTGCTATTCAATTTGAATTGACTTTTGCTCAAATAAACTC--AAGATATTTAACATGT-CTCAG------TTTAC
TTTTTA-------ACA---GCAT---ATATCTCTAGAGTTTCTCAACATA-----TTTATTTCCGTCTTC-TTATAG
>Condylura_cristata
TTGGAAAACCAAGTTTCATTTATACCTTTTCAATTCTTT-TACTGCAATA-T----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------GTAT---ATAACTCTAGAACTTCTCAAAGAA-----TCTCTTTCCATCCTC-TTAAAG
>Uropsilus_gracilis
CTGGAAGTTCAAATTTTATT--GATTTATTCACTTTTTTTTACTACAATG-T----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------GTGT---ATTTTTCTAGAACTCCTCAAATGA-----TCTATTTCCATCTTC--TATAG
>Homo_sapiens
CTGCAAAACCAAATTT-ATTTTCACTTTCTCACCTTTCT-GACTGAAATGTT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------GCAT---ATAGCGCTAGAGCTTCTTAACATACTTATTTTATTTCCATCTTC-CTACAA



Dog46_LINE

>L1_CARN7_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------ATAAATAAG-------------------------------
-TCATGGGGATGTAATGTACAGCATGGNGAATATAGTCAATA-----ATATTGTANTAACNTTGTATGGTGACAGATGGT
AACTAGACTTATTGTGGTGATCACTTCACAATGTATACAAATGTCGAATCACTATGTTGTACACCTGAAACTAATATAAC
ATTGTATGTCAATTATACTCAAATAAAAAAA-------------------------------------------------
----------------------------------
>Canis_familiaris
CCTTGACATCCTTAAGA-TCTTAGCTTTCTACAG-TGCTATTTTCCTTATTA---TT--AACAAATG-GCTT---GGGAT
GCATGAGTGGCTCAGCAGTTGAGCTTCTGCCTTCCACCCAGGGCATGATCCTGGAGTCCCAGGATCGAGTCCCACATCGG
GCTCCTGGCAAGGAGCCTGCTTCTCTCTCTGCCTAGGTCTCTGCCTCTCTCTCTCTCTTTCTGTGTCTGTCTCTCATGAA
TAAATAAATAAAATCTTAAAAAAAACACACCCCAAATGGCTTTAAAAATAGCTTCATATTAAACA-TGGCTTGTGCCATT
TTTAAGATGATTGAA-GTAGGTCTTAGAAGTTTTCATCACTAGAAAGAAGTTTC-GTAATGATACAAGGTGATGGGTGTT
AACTAGACTTACT---GTGATCACTTCACAATATACACCAACATCGAATCATTATGTTGAACACCTGAAACTAATAT---
-------GTCAATTATATCTAAATTT--------TT------TTTAAATGGCTT---ATTACAATTTCAAGGGGCTCCCT
CAGGCCAGAGATGGGACCATCTGAGCACTAGTAA
>Felis_catus
CCTTGACATCCTCAAGA-TTCTAGATTTCCCCAGATGCCCTTTCCCTTATTA---TT--AACAAATG-GTTT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------TAAAAATTGCTTCTTATTAAAAAGTGGCTTGTGACA--
-TTAAGATTATTTAA-GTAGATCTTAAAAGTTTTCATCACTAGAAAAAAAATT--GTAAAGATGCTAGGTGATTGATGTT
AACTAGACTTACT---GTGATCACTTCACAATATATACCAACATCGAATCATTTTGTTGGACACCTGAAACTAATATAA-
----TATATGAAGTATATCTAAAGTT--------TT------TAAAAATGGCTT---G-TGCGATTTCAAGAGCTTCCGT
CAGGCCAGAGATGGGACAACTTGAGTGCTAATAA
>Manis_pentadactyla
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATTGCCCTTTAAATGCATA---TT--AAAAAATG-GCAT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------AATAAATGGCTCCATATTT-------------------
-TTAAGATCATTTAA-GTAAACCTTAAAAGTTTTCATCATTAGAAAAAAAATTGTGCAATAATGTAGGGTGACGGATGTT
A-----ACTTACTGTAGTGATCATTTCACAATATACACAAATATTGAATC---ATGTTGCATACCTGAAATTAATATAAT
GTTAC---------ATATCTAAA-----------TT------------TGGCTT---G-TGCAATTTGAAGAGGCTCCCT
TGGGCTAGCAGTGGGACAATTTATGCACTAATAA
>Sus_scrofa
CCTTGATAGCCTTGAGA-TTTTAGCTTTCCACAGCTACCCTTTGTCTTCGCA---TTTTAAAAAATG-GCT---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TATTGGCATCGTATTAAAAA-TGGCTTGTGCCATG
-TTAAGAGCATTTAA-GTAGATCTTAAAAGTTTACATCACTA---AAAAATTT--GTAGCAATGAAAGGTGATGGATGTT
AACTAGACTGATTGTGGTGATCATTTCACAGTATATACAAACACGGAGTCTTTATGTCGTCCACCTGAAACGAACATAAA
GTTATATGTTGATTATATCTAAATTT--------TT------AAAAAATGGCTT---G-TGCCATTTCAAGAGGCTCCCT
TGGGCCAGAGATGGGACCATCTGAGCACTAATAA
>Tursiops_truncatus
CCTTGATATCCTTGAGA-TTCTAGCTTTCTACAGCTACCCTTTTTCTTCATA---TT--AAAAAGCAAGGGT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------TAAAAATGGCTTCATACTAAAAA-TGCCTTGTGACGTT
TTAAAAATCATTTAA-GTAGATCTTAAAATTTTTCATCACTAGAAAAAAATTT--GTAACAATGTATGGGGACAGATGTT
AACTAGACTTA-TGCTGTGACCATTCTGCAATGCATACAAATACCGAGTCGTTACATTGTAAACCTGAAAATAATATAAT
GTTACATGTAAATTATATCTAAATTT--------TT-------AAGAATGGCTT---G-TGCAATTTTAAGAGGTTCACT
TGGACCAGAGATGGGACAATCTGAGCACTAATAA
>Equus_caballus
TCTTGATATCCTCAAGACTTCTAGCATTCTACAGTTACCCTTTCTCTTCATA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------TT------AAAACATGGCTT---G-TGCAACTTTAAGAGGCTCTCC
TGGGCCAGAGATGGGACAACATGAGCACTAACAA
>Ceratotherium_simum
TCTTGATATCCACAAGACTTCTAGCTTCCTGCAGTTAGT---TTTCTTCAAA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------TT-------AAAAATGGCTT---G-TGCAACTTGAAGAGGCTCTCC
TGGGCCAGAGATGGGAAAATCTGAGCACTAATAA
>Myotis_myotis
CCTTGATATCCCTCAGT-TTCTAGCTTTATACAGTTACACTTTCTCTTCATA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------TTTTT--AAAAAAATGGCTT---G-TGCAATTTCAAGAGGCCCCAT
GGGCCCAGAGATGAGCTAATCTGAG-----ATAA
>Rousettus_aegyptiacus
CTTTGATATCCTTGAGT-TTCTAGGTTT--ATAGTTACCTTTTTTCTTCATA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------TG------AAAAAATGGATT---G-TGTAATTTCAAAAGGTTTCCT
TGGGCTAGAAATGGGACAATCTGAGCACTAATGA
>Condylura_cristata
--------------AGACTTCTAGTTTTCTCTTGCCTCTC--TTTTTTCATA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------TT------AGAAAATGGCTT---G-AGGAATTTCAAGAGGCTTTCT
TAGGTTAGTGATGGGACAATTTGAGTGCTAACAA
>Solenodon_paradoxus
CCTTGATAACCTCAAGACTTTTAGAGTCCTACAGTTACCCTTGTTCTTCATA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------TT-----AAAAAAGTGTTTT---A-TGTGATTTGATAAGGCTCTCT
TGAGTACTAGATGGAACAGT--------GAATAA
>Homo_sapiens
CCTCAATATCCTTGAGACTTCTGGGCTTTTACAGTTACCCTTTTTCTATGTA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------TTATTAATAAAAGATGGCTT---G-TGAAACTTGAAGAGGCTCCTT
TAGGCCATAGATAGGACAATCTGAGCACTATTAA



Dog46_LTR

>MER34C_CF
--------------------------------------------------------------------------------
-------------TGAAGGGGAGCAGAATTTGCCACCCCAAAATAT-GCCTCTTTGGCA-TAAGGATTATTTTAGGCTGA
TTATTTTTAAGAAACTGCAGACACAGGAGAAGCTCTGAAAACCGAGTAGAAGTTACCCTTTTGTAA-GAGACATTT----
-------------------------------------ACATTTATAAGG---GAAATCTCCATTTGTAAGGGTGTCTCCC
TCTCTGTACCAGGAAGAGGAGGATGACTCTAAATCTCTAGAAACTCTTATCAA-TGGAGAAGGCAAGGACTTAAATCTGC
ATAACA----ACCTTACCCTTGTTTAC---------TGTGCTTTTCCTGGTAACCTCCCATAA------CT-GACTCCCC
A--CCCCCAACATCTT-TTTTGTCTTTAGCTGGAGATGGTATTTAAGGTGATGGCTTGGGCCATTTCGGGGAGTTACTCA
GTTTTCCTGGGTCTCTCCCATGTATACAGGAGGTATACATATGTTATTAAACTTTTGTTTGTTTT------TCTCCTGTT
AATCTGTCTTATGTCAATTTGATTCT-------TAGA--------------CCAGCCAGAAGAACCTAGAAGGGTAGAGG
AAAATTT---TTTTCTCCTCAACA--------------------------------------------------------
------------
>Canis_familiaris
TAATTT---GCAAAATGTGTTTCACTGCCCACT------ATCCCTCCTCCACTC----------TCCCAAAAGT-----T
TTA---AAGC---TGAAGGAGAGCAGAATTTGCCACCCCACAATAT-TATTCTTCGACA-TAAGGATCATCTTG------
--------AAGAAACAGCAGACATAG----------AACAACTATGCAGAAGTTCCCCTTTTGTAAGGGGACATTT----
-------------------------------------ATGTCTCTCAGG---GAACTCGCCATCCCTAAGGGTGTCTCCC
TCTCTGTACCAGGAA---AAAGAGGTGTCTAGATCTCTAGAAACTCTTAGCAA-TGGAGAAGGAGAGGACTTAAATCTGC
CTACCA----ACCATACTCCAGCTCAC---------AGTGCTTTGCCTGACAGCCACCCATGA------CT-GGCTCCCC
ACGCTCCCAACATC---TTTTGTCTTTAGCCAGAGAGGGTATTTAAGGAGGTGGCTTGGGCCATTCCAGG-AGTTACTCA
GCTTTCCTGGGTCTCTCCTGTGTATGTGGGGGGCAT----ATGTTAGTAAAC--TTGTTTGTTTT---TCTCCTTCTTGT
TATTTATTT------ATTTTTATTACAGCAGG-GGTGGGTGGGG----GCCTCGGCT--AAGAACCTAGAAGGTTAGAGG
AAAAATTATTTTTCAACCCTTACA---AAGC---CAACTGCCTTTTTTTTTT-------CAGAGAAGAAATAGGAGGCCA
GAGAGGTGAAGC
>Felis_catus
TAATTT---GTAAAATGTGTTTCACTGCCCGCT------ATCTGTCCTCCACTC-----------CCCAAAGGG-----T
TTA---AAGC---TGAAGGAGAGTTGAATTTGCCACCCCACAGTACGGGTTCTTTGGCA-TAAGGATCATCTTG------
--------AAGAAACAGCAGACACAG----------AAAACCTGCATGGAAGTTACCCTTTTGTAA-GGGACATTT----
-------------------------------------ACATTTATAAGG----AAGTCTCCATCCGTAAGGGTGGCTCCC
TCTCTGTACCAGAAA------GATGTGCCTACATTTCTAGAAACTCTTACCAATTGGAGGAGGCGGGGACTTCGATCTGT
GTACCA----ACCATGCTCTCGCTCAC---------TGTGCTTTGCCTGACAGCCTCCCATAC------TTGGGCTCCCT
AT-CTCCCAACATC---TTTTGTCTTCAGCTGGAGATGGTATTTACAGTGGTGGCCGGGGCCATTCCAGG-AGTTCCTCA
GTTCTCCTGGGTCTCTCTTGTGTATGCAGGGAGCATAC--ATGTTATTAAAC--TTCTTTGTTTTTTCCCTCCTCCTGTT
CATCTGGCT--------TTTTATTATAGCTGCAGGGGGGTGGTT----GCCTCAGCC--AAGAGCTTAGAAGGTTAGAGG
AAAAATTATTTTTCAACCTATACA---AAGC---CAACTCCCTTATTTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNN
>Manis_pentadactyla
TAATTT---GCA-AATGTG---CACTGCCCACT------ACCCCTCCCTCCCTCCCTCCCTCCTCCCCAAAGGG-----T
TGC---AAGC---TGAAGGGGAGCAGAAGGGGCCACCCCAAAGTAT-GCCTCTTTGGCA-TAAGAACTGTTTCAGGCTGA
TTATTTTTAAGAAACAGCAGACATGGGAGAAACTCAGAAAACCTAGTACAAGTTA-CCTTTTGTAA-GAGACATT-----
---------------------------------------AACTCCAAGG---GAAATCACCATTTGTAAGGGTGCCTTCC
TGGCTGTACCAGGAAGAGAAGGA-----CTGAATCTCTAGGAACTCTAATCAG-CAGAGAAGGTAATGACCTACATCTGA
ACAACAACCTACCTTACCCTTGTTTGC---------TATGTTTTTCATGACAACCTCCCGTAA------CT-GGCTCCCA
A--TCCCAAACAACTTCTTTTGTCTTTAGCTGGACACTGTATTTAAGGTGATGGCTTGGGCTATTTCCGGGAGCTCCTCA
GTTTTCCTGGGTCTCTTCCATGTATACAGGAGGTATAC--ATGTTATTAAAT--TGGTTTGTTTT---------CCTGTT
AATCTCTCT--------TTTTATAAT--GTGGGGGGAGGAGGGA----GGCTCAGTC--AAGAGCCTAGAACGGTGGAGA
GAAGATTATTTTTCCTCCCCTACA---AAGC---CAATTTCCTTAATTTTT--------CAGAGAAAAAACTGGAGCCCA
GAGAGGTGAAGC
>Sus_scrofa
TAACTTGAGGAGGAAGGCAGATTCCTGCCAG--------ACCTCTCCCAT------------------------------
-----------------------------------CCCC-AAATAT-GCCTCTTTAGCA-CAAGTATTATCTCAAGCTGA
TTATTTTTAAGAAACAGCAGATGTAGGAAAAGATCTGAAAATAGAGTAGGAGTTACCCTTTTGCAA-GAGACCCTTTAGC
AAGTTAAAAATTACAAGTTAAAAGTTACCCTTTTGCAAGATTTATAAGGAAAAAAATCTCTATTTGTTAGGGTGTCTTCC
TCTCACTA-CAGGAAGAGAAGGATAA--CTAAATCTTTAGAAA--CTAATCAA-AGGAGAAGAGAA--------ATCTGC
AGAACA----ACTATATTCTC-TTTAC---------TGTGCTTTTCCTGATAACCTCCCTTAA------CT-GACTGC--
-----CCTCAAATT---TTTTGTCTTTAGCT-GAGATGGTATTTGAGGGGGTGATTTGGGTCATTTCAGGTAGTTGATCA
ATTTTCCTGAGTATCTCCCATGAATACAGAAGGTACAC--ATATTATTAAAC--TTGTTTGTTTT-----CACTCCTGTT
TATATCT----------TTTTATTAC-----------AGAGGGG----GTCTCAGCC--AAGAATGTAGAAAGGTAGAGG
GAAACCTATTTTTCCTCCCCTACA---AAGC---CAATTCCTTTTTTTTTTTTTTTTGCCAGAGGAGAAGCTGTAAC--A
GAGATTTGAAGC
>Tursiops_truncatus
TCATTT---GCAAAATGTGTTTCACTTCCCATG------ACCTCTCCCCCAC----------------AAAGGG-----T
TGC---AAGC---TGAAGGGGAGCAGAATTTGCCACCCCAAAATAT-GCCTCTTTGGCT-TAAGGATTATCTTGAGCTGA
TTATTTTTACAAAACAGCAGACATAGGAAAAGATCTGAAAAGTGAATAGGAGTTACCCTTTAGCAA-GAGAGCCTTTAGC
AAGTTAAAAATTACAAGTTAAAAGTTACCC-TTTGCAAGATTTATAAGG---GAAACCTCCATTTGTAAGGGTGTCTCCC
CCTCTCTACCAGGAAGAGAAGGATAACTCTAAATCTTTGGAAACTCTGATCAA-AGGAGAAGGAAATGACTTAAATCTGC
ATAACA----CCCATACTCC-ACTTAC---------TGTGCTTTTCCTGATACCCTCCCTTAA------CT-GACTCC--
-----CCTCGCATC---TTTTGTTTTCAGAT-GAGATGGTATCTAAGGTGATGGCTTGGGTCATTTCAGGGAGGTGCTCA
GTTTTCCTGGGTCTCTCCCATGAAAACAGGAGGTGCAC--ATGTTATTTAAC--TTGCTTGTTTT------TCTCCTATT
TATCTTTCT--------TTTTATTAC------------AAGGCG----GTCTGAGCC--AAGAACCT-GAAGAGTAAAGG
TAAAATTATTTTTCCTTCCCTTCA---AAGC---CAACTCCCTTTTTTTT---------CAGAGGAGAAACTGGAGCCCA
GACAGGTGAAGC
>Equus_caballus
TAATCT---GCAAAAAGTCTTTCACAGCCCAGT------ACCCCTCCCCTGCCC-----------CTAAAAGGG-----T
TGC---AAGC---TGAAGGAGAGCAGAATTTGTAACTCCAAAATAT-GCCTCTTTGGCA-CAAGGATTGTCTCGAGCTGA
TTATTTTTAAGAAACAGCTGACATAGGAAATGCTCTGAAAAGGGAGTAAAAGCTACCCTTTTGTAA--GGACATTT----
-------------------------------------ACATTTGTAAGA---GAAATCTCCATTTGTAGGGTTGTTTTTC
TCTCTGTACCAGGAAAAGAAGGATGACTGTACATCCCTAGAAACTCTTATCAT-TGCAGAAGGCCAGGACCCAAAGCTGC
GTAACA----ACCTTACCCTTGTTTAC---------TATACTTTTCCTGGTCACCTCCCATAA------CT-GACTCCTC
A--TCCCTAACCTC---TTTTGCCTGTAGCTGGAGATGGTATTTAAGGTAGTGGCTTGGGCCATTTCAGGGAGTTACT--
-----CCTG-GTATCTCCTATGTATACAGGAGGTATAC--ATTTTACTAAAC------TTGTTTT------TCTCTTGTT
AACCTGTC---------TTTTTTTAC------AGGGGGAGGGTC----CCCTTAGCC--AAGATCCTAGGAGGGTAGAGG
GAGAATTATTTTTCCTCTCTTATA---AAAG---CAACTCTCTTATTTTT---------CAGATGAGAAAATGGAGCCCA
GAGAGGTGAAGC
>Ceratotherium_simum
TAATCT---ATAAAAAGTGTTTCACTGCCCAGT------ACCCCTCCCCTGCCC-----------CTAAAGAGG-----T
TGC---AAGC---TGAAGGGGAGGAGAATTTGTTACTCCAAAATAT-GCCTCTTTGGCATTAATGATTGTCTTGACCTGA
TTATTCTTAAGAAACAGCTGACATAGGAAATGCTCTGAAAACTGAGTTGAAGTGACCCTTTGGTAA--GAATATTT----
-------------------------------------ATATTTATAAAG---TAAATCTCCATTTGTAGGGGTGTCTCCC
TCTCTGTACCAGGAA---GAGGATGACTCTAAATTTCTAGAAACTCTTATCAT-TGCAGAAGGCAAGGACTTAAATCTGC
AAAAGA----ACCTTACCCTTGTTTAC---------TGTGCTTTTCCTAGTCACCTCCCATAA------CT-TACTCCTC
A--CCCACGACATCTTCTTTTGCCTTCGGCTGGAGATGGTGTTTAAGGTGGTGACTTGGGCCATTTCAGGGAGTTGCTCA
GTTTTCCTG-GTCTCTCCCATGTATACGGGAGGTATAC--ACGTTATTAAAC--TTGTTTGTTTT------TCTCCTGTT
AATCTATCT--------TTTTATTAC-------GGGGGAGGGTC----CCCTCAGCC--AAGAACCTAGAAGGGTAGAGG
GAGAATTATCTTTCCTCTCTTACA---AAGC---CAACTCCCTTATTTTT---------CAGATGAGAAACTGGAGCCCA
GAGAGGTGAAGC
>Myotis_myotis
TAAGTT---GCAAAAAGTGTTTCATTG-------------TCCCTCTACCACAT-----------TCAAAAGGC-----T
TGC---ATGT---TGAAGGGGAGCAGAATTTGTCACCCCCAAATTT-GCCTCTGTGGTG-TAAGGATTATTGGGAGCTGA
A-------AAGAGACAGGTTACATAGGAGAAGCTCAGAAAACT---CAGAAGTTACCCTTTTGTAG-GAGACATTT----
-------------------------------------ATGTTAACAAGG---GAAATCTCCATTTATAAG--TGTCTCTC
TCGCTGTATCAGGAAGTGAAAGATGATTCTAAATTTATAAAAACTCTTATAGA-TGGAGAGGTAAATGACTTA-ATCTAA
ATAACA----ACATTACCC--ATTTAC---------AGTGCTTTGCCCCATAATTGTCCATAAAAAATTAT-GGCTGCCG
---CTTCCAACATTTTCCTTTGTCTTTAGCTGGAGATGGTATTTAAGATGGTGG------------TGGAGAGTTACTCA
GTTAGCCTGCGTATCGCCCATGTATACAAGAGATATGC--ATGTTATTAAACTTCTGTTTTCTTT------CCCAGTGC-
-----------------TTTTATTTCAGGCGTGAGGAGGAAGGTAGGTGTCTCAGCC--AGGAACCCAGATGGGTAAAGG
AAAAACAATTTTTCCTCTCCTACA---GAGC---CAAGTCCCTTATTTTT---------CAGATTAGAAACTGGAGCC--
AAGAAGTGAAGC
>Rhinolophus_ferrumequinum
TAATTT----TAAAATGTATTTCACTGCCTACT------ACCCCTCCTCCACAC-----------CCAAAAGGG-----T
TGC---AAGC---TAAAGGGGAGCAGAATATGCCACCCCAAAATAT----------------------GCCTTGAGCTGA
TTATTTTTAAGAAAGAGCATACACCAGACAAAATCTGAAAACTGAGTTGTAA----------GTAA-GAGATACTT----
-------------------------------------------ACAATG---GAAATCTTGATTTGTATG--TGTCTCCC
TGCCAGGACCAGGAAAAGAAGGATGA--------TTCTAGGAATTCTTATCTA----AGAAGGCAATGACCTAAATTTGC
ATAACA----GCCTTACCCTTATTTACTGTATGTGTTGTGCTTTGCCTAATAACCTCCCGTAA------CT---------
A--CCCTCAATATCTTCCTTTGTTTTCAGCTTCAGTTGGTATTTAAGATGTTGG------------CAGGGAGTTATTCA
GTTTTCCTGAGTATTTCTTGTGTGTACAGGAGGTGTAC-----ATATTAAACTTTTGTTTCTGTT----TTTCTGCTGTC
AATCT------------TTTTATTACCAGTGTGGGGGTGGGGTGAGGTGGCTCATCC--AGCAACCTATATGGGTAGAAG
GAAAATTATATTTCCTTCCCTGCA---AAGC---CAACTCCTTTATTTTT---------CAGATGAGAAACTGGAGCCAA
GAGAGGTGAAGC
>Condylura_cristata
TACTTT---GCATCAATTGTTTCCTTGCCAGTACCTGCCACCCCTCCCCCCTCC-----CCAGCCCCCAA---GTTACAC
TGA-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------AAGC---CAACTCCTGTATTTAC---------CACA-GAGAAATTGCAGCCTG
GAGAGGTGAAGC
>Scalopus_aquaticus
TAGTTT---GCATAAATTGTTTCATTGTTAGT-------ACCCCTTGCCCCTCC------------CCAAAGGGTTACAT
TAG-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------AAGC---CAACTCCTGTATTTAC---------CAGATGAGAAACTGCTGCCCA
GAGAGGTGAAGC
>Homo_sapiens
TAATTT---GTAAAAACGTTTTCACTGCCTGCTAGCCCCGCCTCTTCTCTGCCC----------CTAGAAACGG-----T
TGA-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------AAGC---CAACTCCCTTATTTTT---------CAGATGAGAAACTGGAGCCTA
GAGAGGTGAGGC



Dog47_LTR

>MER34C_CF
----------------------------------------------------------------------TGTTGA---G
GAGAAAAAAATTTTCCTCTACCCTTCTAGGTTCTTCTGGCTGGTCTAAGAATCAAAT--TGACATAAGACAGATTAACAG
GAGAAAAACAAACAAAAGTTTAATAACATATGTATACCTCC-TGTATACATGGGAGAGACCCAGGAAAACTGAGT-AACT
CCCCGAAATGGCCCAAGCCATCACCTTAAATACCATCTCCAGCTAAAGA--CAAAAAAGATGT---TGGG---------G
GTGGGG--------AGTCAGTTATGGGAGGTTACCAGGA-AAAGCACAG---TAAACAAGGGTAAGGTTGTTATGCAGAT
TTAAGTCCTTGCCTTCTCCATTGATAAGAGTTTCTAGAGAT---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------TTAGAGTCATCCT-----------CCTCTTCCTGGTACAGAGAGGGAGACA
CCCTTACAAATGG--AGATTTCCCTTATAAATGTAAATGTCTCTTAC-AAAAGGGTAACTTCTACT--CGGTTTTCAGAG
CTTCTCCTGTGTCTGCAG-TTTCTTAAAA--ATAATCAGCCTAAAATAATCCTTATGCCA--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------AAGAGGCATATTTTGGGGTG-----GCAAATTC
TGCTCCCCT------TCA--------------------------------------------------------------
--------------
>Canis_familiaris
CAACGAAACAGCAAGACATCACAATTTTCTACGACCTG--TTTTTC--ATATGTTCCAAA---TAAT---TGTGGGGGAA
GAGAGACAAGTTTCCCTCTACCTCTCCAGACTCTT-------GGCTGAGACACCCCTTGGAATAAAAGACAGATTAACAG
GACAAAAGCAGACAGAAGTTTAATAAC--ATGCATACCTCC-AGTATCCATGCGAGAGATGCAGGAAAACTGAGTAAACT
CCGTGAAATGACCCAACCGACCGTCTTAGATACCATCTTCGG-TAAAGAAAAAAGAAAGATTT---TGGAGTGGGAGGGG
GGGAAA--------GGCCAGTCTGGGGAGGTGAGCAGGC-AAAGCACAA---TAAACAAGGGTACAACTGCTAAGCACA-
CTAAGTTGCTGCCTTCTTCTTTGAGAAGGGTTTCCAGAGAT---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------TTACAATCATCCT-----------CCTCTTCCTGGTACTGAGAGGGAGACA
CCCTTAGAAATGG--AGATTTCCTTTTTAAATGTAAATGACCCCTAC-AAAGGGGTGACTTCTACT--TGGTTTTCAGAG
CTTTTCCAATGTCTGCTA-TTTGAAAAAAA-ATAATCACCCTAAAATAACTTTTATGCCA--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------AAGAGACACATTTTGGGGTG-----GCAAATTC
TACTCCCT-------CCG---TTAT---A--AACCATGGGATAAAATTAATGCGAGAAAAA--AAA--------------
---ATC--AACTTG
>Felis_catus
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNN---NNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNCCCCCACCTTAAATACCATCTTCAG--AAAGACAAATGGAAGATTT---TGGAGCGGGGGGCG
GGGGGGGGGGCGGAAGCCAGTTTGGGGAGGTGACCAGGC-AAAGCACAC---TAAGTCAGGCTACAACTGTTCGGCAGAT
TTAAACCGCCGCCTTCTCCACTGATCCGAGTTTCC---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------CCAGAGTCACCCT-----------CCTGTTCCGGGTGCGGAGAGGGAGACA
CCCTCACCGATGG--AGATTTCCTTTTTAAATGTCAATGTCCCCTAC-AGAAAGGCAACTTCTCCT--TGGTTTTCAGAG
CTTTCCCCAGGTCTGCTG-TGTTTAAAAA--CTAATCAGCCTAAAGTAAGCCTGCTGCCA--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------AAGAGACATATTTCGGGGGGGGGGAGCAAATTC
TGCGCCCCT------TCT---TAAT---A--AAACATGGGAGAAAATTAATGCAAGGACAA--GTAACTGTTTTTCC---
---ATC--AAGTTG
>Manis_pentadactyla
CAACAAAACAG-----CAT--TAATTTTCTAAAGCATG--TTTTTTTCATATATCACAAG---TAGT---TGTGGG-GGA
AAAACATAATTTTCCCTCTGTCCATATAGGTTCTT-------CACTGAGACCCATCCTGTAATAAAAGACAGATTAACAA
GA-AAAAACAGACAGAAGTTTAGTAAC--ATGATTATCTCC-TATACACATGGGAGAGACCCAGGATAATAGAAT-TACT
CCTTGAAATGGTCCAAGCCCTCACTTTTAATACCATCTCCAGTTAAAGA-CAAAAGATGTTACAGGTGGA---------G
GGGGAA--------CACCAGTTATGCGTGGTGACCAGGA-AAAGCACAG---TAAA---------GGCTGTAATGCAGAT
TTAAGTCCTTGTCTTCTCCATTGTTAAGAGTTTCTAGAGAC---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------TGAGTCATCCC-----------CTTCTTCCTGGTAT--AGAGGGAGACA
CCCTTACAAGTGG--GGATTTCCCTTATACAGTCAAATGCCCCTTAC--AAAGCATAACTT---TT--TGGTTTATAGAG
CTTTTCCTATGTCTGCTA-TTTCTTAAAAA-ATAATTGGTCTAAAATAATTCTTATGAGA--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------AAAAG-CTTATTTGGGGGTG-----GCAAATTC
TGCTCCCCT------TCA---TAAC---C--AAACATGGGAGAAAATTAATTCAGGAAAAT--AAAATTGTTTTTAC---
---ATC--AAGTTG
>Sus_scrofa
CAAGAAAACAGCCAGACAT--CAATTTTCTAAGACCTC--TTTTGG--AAATGTTTGGAA---TAAT---TGTGGGAGAA
GAAAAACAATTTTCCTTCTACCCTGCTAGCTTTTT-------GGCTGACACCCACTG-----------------TAACAG
GAGGAAAACAG-GAGAAGTTTAATAGC--ATGGATCCCTCCTTGTATACCTGGGAAGGACCCAGGAAAAAT------ACT
CCCTCAAACAGCCCAAGCCACCACCTTAAGTACCATCTCCAGCTAAAGACCAAAGAAAGATGT---TGAG---------G
GCAAGG-----------GAGTTGTGGGAGGCTTTCGGGCAAAAGCACAG---TAAACAAGGATAAAGTTGTTATGCAGAT
TTAAATCATTGTCTTCTCCACTGATAAGAGTTCCTAGACTT---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------CTAGA----CCCT-----------CCTCTTCACAGCACAGACTGGGAGACA
GTCTTACACATGG--AGTTTTCCCTATAAATGGTGAAGGTCCCTTAC-AAAAGCATTGCCTCTACTACTGATTTCCAGAG
CTTTTCCCACGTCTACTG-TCTCTTAAAAACATAATCTGCTCAAAATAATCCTTATGCCA--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------AAGAGGCATATTTTAAGATG-----GGAAATTC
TGCTCCCCTTCATAATCA---TAAT---C--ATATGTGGGAGAAAATTAATGCAGGAAAAA--ATAATTGTTTTTGT---
---GGC--AAGTCG
>Tursiops_truncatus
CAGCAAAAGAACAAGACAT--CAATTTTCCAAGATGCG--TTTTTT--AACTGTTTCAAA---GAAT---GGTAGGAGAA
GAAAAATAATTTTCCTTCTACCCTGCTAGATTCTT-------GGCCGAAACCCCCCG-----------------TAACAG
GATGAAAACAA-CAGAAGTTTAATAGC--ATGGGTCCCTCT-TGCATACATGGGAGAGACCCAGGAAAACTGAGT-AACT
CCCAGAAAT-GTCCAAGCCACCACCTTCAATACCGCTCCCAGCTAAAGACCAAAGAAAGATGC---TGGG---------G
GGAGGG--------AGCCAGTGATGGGAGGTTTTCAGGC-AAAGCACAG---AGAACAAGG---------TTGTGCAGAT
TTAGGTCACTGCCTGCTCCACTGATAAGACTTTCTAGAGAT---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------TTAGAGTCACCCTCGTCTTCCAAATCTCCTCCTGGTACAGATAGGGAGACA
CCTTTACAAACGG--AGATTTCCCTTGTGAATGTAAATGTCTCTTACAAAAAAGGTAACTTCTACT--CAGCTTTCAGAG
CTTTTCCTGTGTCTGCTT-TTTCTTAAAAA-ATTATCTGCTCAAAATAATCCTTATGCC---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------AGAGGCATATTTTGAGGTG------GAAATTC
CGCTTCCAT------TCA---TAAT---C--AAACATGGGAGAAAATGAATGCAGGAAAAA--ATAATTGTCTTTAT---
---GTC--AAGTTG
>Equus_caballus
GAACAAAACAGCAAGACAT--TGATTTCCTAAGACTTG--ATTTTT--ATATGTTTCAAA---TAAT---TGTGGAGAAG
GAAAAGTAATTTCCCCTCTACCCTT-TAGGTTCTT-------AGCTGAGACTTCCTT-GTAATAAAAGACAGATTAACAG
GAAAAACACAA-CAGAAGTTTAATAAC--ATGTATGCCTCC-TGTATATATGGGAAAGACTCAGGAAAACTGAGT-AACT
CCCTGAAATGGCCCAAGCCACCAGTTTAAATACCATCTCCTCGTAAACA-CAAAAGAAGATAT---TGGG--------TT
GGAGGG--------CGTCAGTTATGGGAAGTGAACAGGA-AAAGCACAG---TAAACAATGGTAAGGTTGTTCCACAGAT
TTAGGTCATTGCCTTCTTCATGGATAAGAGTTTCTAGAGAT---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------GTAGCCATCCCT----------CCTATTCCTGGTACTGAGAGGGAGACA
CCCTTACAAATGTGCAGATTTCCCTCATAATTGTAAATGTCTCCTAC-AAAAGGGTAACTTCTACT--CAGTTTTCAGAG
CGTTTCCTATGTCTGCTG-TTTCTTAAAAA-ATAATCAGCCTAAAATAATCCTTATTCCA--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------AAGAGACATATTTTGGGGTG-----GCAAATTC
TGC-CCCCT------TCA---TAAT---C--AAACAGGGTAGAAAATTAATGAGTGAAAAA--TTAATTGTTTTTAT---
---ATC--AAGTTA
>Ceratotherium_simum
CAATAAAACAGCAAGACAT--TAATTTTTTAAGATCTG--TTTTTT--ATATGTTCCAAA---TAAT---TGTGGAGAAG
GAAAACTAAATTTCCCTCTATTCTTCTAGGTTCTT-------AGCTGACACCCCCCT-GTAATAAAAGACAGATTAACAG
TAAGAAAACAAGCAGAAGTTTAATAAC--ATGTACACCTCC-TGTATACATGGGAAAGAACAAGGAAAACTGAGT-AACT
CCTCAAAATGGCCCAAGCCACCACCTTAAATACCATCTCCAGCTAAAGA-CAGAAGAAGATGT---TGGG---------G
GCGGGG--------G--CATTTATGGGAGGTGACCAGGA-AAAGCACAA---TAAAGAAGGGTAAGGCTGTTATGCAGAT
TTAAGTCTCTGCCTTCTCCACTGATAAGAGTTTCCAGGGAT---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------TT--AGTCATCCC-----------TCTCTTGCTGGTACAGAGAGGGAGACA
CCCTTACAAATGG--AGACTTCTCTTATAAGTGTAAATGTCTCTTAC-AAAAGGGTAACTTCTACT--CAGTTTTCAGAG
CTTTTCCTATGTCTGCTG-TTTCTTATAAA-ATAATCAGCCTAAAATAATCCTTATGCCA--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------AAGAGACATATTTTGGGGTG-----GCAAATTC
TGCTCCCCT------TCA---TAAT---C--AAACATGGAAGAAAATTAATGCAGAAAAAA---TAATTGTTTTTAA---
---ATG--AAGTTG
>Myotis_myotis
CAATAAAGTAGAATGAAAT--TAATTTTCTAAGAACTGGTTTTTTTTAATATGTTCTAAA---TTAT---TATGGAGAAA
GAAAAATAATTTCTCTCTCCCCTTCAAAAGTTCTT-------GGCTAAGATACCGCATATAATAAA----AGGTTAACAG
GTGAAAAA----CAGAAGTTTAATCGC--ATGGATATCTCC-TGTATACCTGGGAGAAA-----------GAAGT-AACT
CTCTGAAATAGCACATGTCACCACCTTAAATACCATCTCCAGATAAAGA-CTAAAAAAAATGT---TGGA---------G
GTGGAA-------GAGTTAGTTAC---AGGTTACCAGCC--AAGCTCAGTTATAAACAAGGGT---GTGGTTATGGGGAT
TTAAGTCCCTGCCTTCTGCATTGATAAGAGTTGCTAGA------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------CTAGAGACT---------------TGTCAGCTTGGCACTGA--GGGAGACA
TCTTTACAAATGG--AGATTTTCCTTGTAAATGTAAATATCTCTAAT-AAAAGGGTAATTTTTACT--CTGTTTTCAGAG
TTTTCCTTGTGTCTGCAG-TTTCTTAAAA--ATAATC----TAAAATAATGCTTATGCTA--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------AAAAAACACATTTTGGAATGG----TTATATTC
TGCTCCCCT------TCA---TAAT---C--AAACCTGAGATAAAATTAATGCAGGAAAAA--AAATGTTTCTT------
---ATC--AAGCTG
>Rousettus_aegyptiacus
CAACAAAACAGCATGACAT--TAATTTTCTAAGGCCTGTTTTTT----ATAGGTTCCTAA---TAAT---TATGGGGAAA
GAAAAATAA---TCCCTCTACCTTTCTAAGGTTGT------TGACTAAAACAATCCTA-TAATAAAAGACAGATTAACAG
GAGAAAAACAA---GCAGTTCCATAAC--ATGGATACCTCC-TGTATACACGGGAGA--CTCAGG---------------
------AATGGCCCAAGCCACCAGCTTAAATTACATCTCCAGCTAAAGACAAAAGAA---------TGGG---------G
GGTGGT--------GTGCAGGTATGGGAGGTTTTAAAGC-AAAGCTCCC---TAAATAAGG-TACTGTTATTATGCAGAT
TTAAGTCCTAGCCTTTTGCATTGATAAA--TTTCTAGAGATGTTGTCCCTGTTTCCATTTATTAAAACAAAACAAACCAA
AAACAAAAACAAAACTAAAAAAACAGTACTGCTTGCCTAGGAATGAATGCTATATTTTCTAGGATTTGACATTTTCAGCA
ATCAAACTACTAAAAACAGAATGCTAAATAGAATGATGTCATTTGTTTCCATAGACTATATTAGATATACTCGATATACT
AGAGCGTTACAAAAATAATAATAATGAAAGTGAGACATTTCGTGGCAAACTTTGGGAGTAAGGTTGGGACTGTAATCCTC
AAGTTATTTTGGGGAAAATGGGAAAAGGGTTAGAGTCAT--------------CCTCTTCCTGTTACAAAGAGGGAGACA
CCCTTACAAATGG--AGATTGCCCT---------------------------------------------GTTTTCAGAG
CTTTTCCTATGTCCGTTGTTTTCTTAAAA--ATAATCAGCCTAAAATAATCCTTAGGTCAAAAAGACTTTTTTTTTTCAC
TTAATAACAATTTCATTTTTTTGCATTTTTATTTTTTTAATTCTTTAATGTCACAACATATTTGACCCCATTTACCACAT
CTACCTTCTTCCTCCACCCCCACACTCTCTGGTAACCACTAGTATATTGTCCATGTCCATGAGTCTCTGTTTGTCCTGTT
CATTTGTTGCTTTTTCGTTTATATCCCACATATAAGTGACATCATGTGGTTTTCAACTTTTTCTGTCTGGCTTATTTCGC
TTAGCACAATTATCTTGAGGACCATCCATGTTGTCGCAAATAGCAGTATTTCATCTCTTCTTATGACTAATATTCCATTG
TATATATGTGCCACAGCTTCTTTAGCCAGTCATCTATCGTAGGACACTTCAGTTGCTTTCATGTCCTAGCCACTGCGAAT
AATGCTGCTATGAACATCGGTGTGCAAAATATCTTTTTGGATATGGGTTTTCAAGTCTTTGGCAAGTAAATACCCAGTAG
AGGGATTGCTGGATCATATGGTAGATCAATTCTTAGTTTTTTGAGGAACCTCCATACTGTTTTCCATAGTTGCCAGTCCC
ACCAGCAGTGTATGAGGGTTCCTTTTTCTCCACATCATTTCCAACATTTGTTGTTACTTGTCCTGTTGACAACAGCTATT
CTAACAGGTGTGAGATGATTACTCATTGTGGTTTTGATTTGCATTTCCCTAATAGCTAGTGATGATGAGCATCTTTTCAT
ATGTTTGCTGGCTACTTGCATGTCTTCTTGGAAGAAGTATCTGTTCCAAAAGACATATTTTGGGGTA-----ACAGAGTC
TGCTCCCCT------TTA---TAAC---C--AAACATGAGA-----TTAATGTAAGGAAAA--AAAATA-TTTTTAT---
---ATAATAAGTTG
>Condylura_cristata
CAACCAAACAGCAAGACAT--GAATTCTCTAAGGCCA---TTTTTTTTTTATGTTCCAAA---TAAT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------C--AAGCATGAGAGATACTTAATGCAGGAAAAAATATAACATTTTTTAT---
---ATC--AAGTTG
>Erinaceus_europaeus
CAACAAAAC--------ATC-CATTTTTCTAACACCTG--TTTTTC--ATATGTTCTAAA---TAAG-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------C--AAATATGGAAAAAAAT-AATGCATGAAAAA--GCAATAGTTTTTCTTTT
TTAATC--AGCTTA
>Tupaia_chinensis
CAACAAAAC--------AT--TAATTTTCAACAATTTG--TTTTGT--ATATGCCCTAAA---TAAT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------CTTAAATGTGTGCAAAATTTAACTGAGGGAAAA--GTAATTATTCTTAC---
---ATC--AAGGTG



Dog50_LINE

>L1MA9_3END
-----------------------------------------------------------------------------TTT
TTCC------AGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATA
TACGTATACATTGTGAAATGATTACCACAATCAAGCTAAT----------------------------------------
--------------------------------------------------------
>Canis_familiaris
TAACATAATCATGCAACTAAATGCAACAATGCAACTGTATAACTAGAAATAATTTGGC---TTCTCAAATTTTG---TTT
CACTTAAAAATTTTTTACTGAGGTATAGTTGACATAT-AGCATTATATGTGTTTC-GATGTATGATATGATGGTTTAATA
TTTTTATATATTGTGAAATGATTATTATAA------------------TAATTTTTTT-----TAAAAAGCAAA-----C
CTTTCCCCATTTCCTTCA-CTCAGCAAAAGATTTCTTCGCATG-TAACTTTGAATA
>Felis_catus
TAACATAATCATACAAGTGGATGCAACAATGCAATTTTATTACTAGAAATAATTTGGT---TTCTCAAGAT------TTT
TACTTAA---ATTATTCTTGAGGTATTATTGACATAT-AGCATTATATGTGTTTC-GATGTATGATGTAATGATTTGATA
TTTCTATATATTGTGAAATGATTACTACAA-------------TAATCAAATATTCTT-----TTAAAGAAAAA-----C
CTTTCCCCATGTCCTTCA-CTCTATGAAAGATTTCTTCACACA-TAAC--TGAATA
>Manis_pentadactyla
TAGTAAAATCATGCAAGTAAATGCTAC--------TATAGTATTAG-AATAATTTGGT---TTCTCAAATA-TT---TTT
TACTTTAAAAATTTTTAGTGAGGTGTAATTTACATAT-AACATACTA---GTCTCAGATATAC------ATGACCCAATA
TTTGTATATATTGTAGACTGATCACTACAA-------------TAATCTATTTTTTTTA----AAAAAGGAAAA-----C
CTTCTCCCATCTCCTTCACCTCAATAAAAGACTT-TTAATACA-TAACTTTGAATA
>Sus_scrofa
TAACATAATCATGAAAGTTAA--CTAC--------TATAGTACTAGAAATAATTTGGT---TTATCAAATAATT---TTT
T----AAAAAATTTTTATTGAGATATAATGGTCAT---AACATTATATTAGTTTCATATGTAACA---AATGATTCAATG
TTTATAAATACTGCAAAATGATCACTATAA-----------------AGAAATATGTTT----TAAATATGAAA-----A
TCTTCTCTCTTTCCTTCA-CTCAGCAAAAAAATTTTTCATGCA-TAACCCTGAACT
>Bos_taurus
TACCATAGTCATGAGAACAAAT-CTAC--------TATAGTACTGGAAATATGTTGGT---ACATCAAATAATT---TGT
TTTTTAA---AATTTTATTGTGATATAATT--------AACATTA-----ATTTTATGTGTATAACACAATGATTCAGTA
TTTGCATATATTGCAAAATTATCCTTACAA-------------TACTAAAAATATTTT-----TAAAAAGA--------A
TCTGCCCCATTTCTTTCA-CTCAGCAAAAGATTTCTTCACAC---AACTCTGAATA
>Equus_caballus
TAAGATAATCATGCAAGTCAACACTGC--------TAGAGTACTAAGAATAATTTAGT----------------------
--------------------------------------------------------------------------------
-------------------------------------------TTCTCAAATA-TTTT-----TTAAAGGAAAA-----A
GTCCCCCCATCTCCCTTG-TTCAGTAAAAGATTTCTTCACATG-TAACTGTGCCTA
>Ceratotherium_simum
TAAGATAATCATGCAAGTAAATGCTGC--------TATAGTGCTAGGAATAATTTGGT----------------------
--------------------------------------------------------------------------------
-------------------------------------------TTCTCAAATTTTTTT-----TTAAAGGAAAA-----C
CTTCCCCCATCTCCTTTG-CTCTGTAAAAGATTTCTTCACATG-TAACTGTGCATA
>Myotis_myotis
TAACA---TTATGCAAATAAATGCTAC--------TATAATACTAGAAATAATTTGAT----------------------
--------------------------------------------------------------------------------
-------------------------------------------TTCTCCAATATATTGT----GAAAAAGAAAA-----C
CTTT----ATCTCCTTGA-------AAAATATTTCTTCACATG-TAAC--TGAATA
>Rousettus_aegyptiacus
TAACATTACCATGCAAATAAATGCCAC--------TATAGTGCCAGAAATAATTTGAT----------------------
--------------------------------------------------------------------------------
-------------------------------------------TTCTCAA---TTTTT-----TTTTAAAAAAA-----C
CTTTTCCCATCTCTTTTT-CTCAGCAAAAGATTTCTTCGCATG-TAGCTATGAATA
>Condylura_cristata
TAACATAACGATGCGAGTGAATACTAC--------CATACTACCAGCGATAATTTGGT----------------------
--------------------------------------------------------------------------------
-------------------------------------------ATCCCATATAACTTTC----TAAAAAGAAAAA----T
CTTCTCCCTTTTCCTTTG-TTCCACAAAATATTTCTTCACATGTTAATTGTGAATA
>Erinaceus_europaeus
TAATATAAT--TGAAATAAAATGCAAC--------TGCAGTTCTAGAGATGATTTGCA----------------------
--------------------------------------------------------------------------------
-------------------------------------------TTTTCAAGTATCTTTCT---CAAAATGAAAA-----C
TTTCTTCCACCTCCTTTC-CTTAGCCAAATATTT----------------TGAATA
>Homo_sapiens
TAATGTCATAATGCAAGT-AATGCCAC--------TATAGTATTAGGAATAATTTGCT----------------------
--------------------------------------------------------------------------------
-------------------------------------------TTCTCAAATATTATT-----TAAAAAGAAAAAAAATA
TTTCCCCCATACCCCATG-CTCAGCAAAAGATTTCTTCACATG-TAACTGAGGATA



Dog57_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--TCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGTACAGCATGGTGACTATAGTTAA
TAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCACCACACACAAAAA-----------
----------------------AATGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTC
ACAATGTATACGTATATCAAAA-CATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATA
AAGCTGG-AAAAA-------------------------------------------------------------------
-----------------------
>Canis_familiaris
CTGATTATTTCCTTCATTTGAACACCTCTACTTTTTTTTA---TTTCT---TGAAAATCACTTCATATGG---TTAAAA-
--------GGTACAAACTGTGAGCTGT--AAG-----TAAGTATGAGGGATGTGATGTACATTAGTATGACTATTGCTAA
CACTGTTGTGTGATACATAAGAAAGTTGTCA--AGAATGGATTCTGAA--TTCTTACCACAGACATTTTCTTCTTTTTTT
CTGTTTTCTT-----TTCCTTTTATTGTATCTATATGA-TTTATG--TATTTTAGCTGAACCTACTGTGATAATCATTTC
ACAA--TATATGTGAATCAAAT-TATGGTGCTG-ATATCTTAAACTTATCCA-GTGATGTATGTCAATTGCTTCTCAATA
TAACTGG-GGAAAATAAAAACGAATTTAAAAATAAT---TTTTAAA---ATTATCTT-TTAAAATTAGCT----CATATA
TTCTGGGGCTTGATAT-AAAGAG
>Felis_catus
CTGATTATTTCCTTCATTCGAGCACCTCTGG-TTTTTTAC---TTTT-----GAAAATCACTTTATACAC---TTAAAA-
--------GGTACAGACTTTGAGTTAT--AAGTTAAATAAGGAGTAGGGATGTAATGTACAAAAGTATGACTATAGCTAA
CACTGCTGTGTGATACATAAGAAAGTTGTCAAGAGAGTAGATACTGAA--TTCTTATCACAAGGAGAAT----TTTTTTT
CTTCTTTCTT-----TTCTTTTTATTGTACCTATATGT-ATGATG--TATTTTAGCTGAACATATTGTGATAATCATTTC
CCAG--TACATGTGAATCAAGC-CATCATGATGTATGACTTAAATTTATACA-GTAATGTATTTCAAGTATTTATCAATG
AAACTCT-AAAAAATACAAAGGAATTTGAAGATAAT---TTTTAAA---ATTGCCTC-TAAAAATTAGCT----CATATA
T-CTGGGGTTTGATGT-AAAGAG
>Manis_pentadactyla
CCCATTATTTCCTTCATTCAAACTCCTCTACTTTTTAAAA---TTTCT---TAAAAATCACCTTATATGG---TCAAAA-
--------GGTACAAACTTACAGTTAT--AAGATAAACAAGTACTAGGGATGTAATGTACAA-ATAATGACTATAGTTGA
TACTACTGTATGGTATAGAGGAAAATTGTTAATGGAGTAAATCCTAAAAGTTCTCATTACAAGGAGAAA-AAATGTTTTT
ATTTTTTCTTCTCTGTTTTCTTTTCTTTGTCTATATGAGAAGATG--GATTTTAGTTTAACCTATTGTAATAATCATTTC
AGAG--TACATATAAATC-AAC-CATCATGCTGTATGCCTTAAAATTACA---GTG--ATTTGTCAATTATATTTCAATA
AAACTGGAAAAAAATAAAAAGGAATTTTAAAATAAT---TTTAAAA---G-CACCTCATTAAAATGATCTCAAATATATA
TTCTGGGACTTGGTGT---GGGG
>Sus_scrofa
CCCATTGTTTCCCTCATTTGAACACCTCTAC--TTTTTTA---TTTAT---AAAAAATCACTTTATATGT---TCTAAA-
--------GGTACACAGTTCCAGTTAC--AAGATAA--AAGTGATAGCATTGTAATGTACAACATGATAACTAGAGTTAA
T--TGCTGTATGATATATGGGAA---CATTAAGAGAATAAATCCTAAAAACTCTCATTACAAAGAAAAT-----------
CTTTGTTTTT-----TTCTTTTTACTGTATCTATGTGAGATGTTG--TTTGTCAGTTGAACCTACTGCGGTAATTATTTC
ACAA--TATGT-TAAATCAAAC-CATAAT--TAAATGTCTTAAATTCATA---ATAATATATGTCAATTATTTTGCAATG
AAACTGG-AAAAAATAAAAAGGAATTTAAAAATAAT---TTTAAAA---ACCACTTTATAAAAATTAGTTCAAAAATATA
TCCTGGGACTTGGTGT-AAAAGG
>Bos_taurus
CCAACTGTTTCTTTCATTTGAACACATCTATGTTCTTA-----TTTCTAAAAAAAAATCACCTTATATAG---TCAAAA-
--------GGTACAAGCTTCCATTTCT--AAGATAAGTAAGTGCTAGGGTTGTAA--TATAACACGATGACTAGAGTTAG
CAATGCTGTGTGAAATATAGGAAAGTAGTTAAGAGGATCAATTATAAAAGTTCTCATCACAAGGAAAAG-AAATTGTTTT
CTTTTTTCTT-----TTCTCTTTATTGTATCTATATGAGATGATG--TAGGTTTGCTGAATCTATTGTGGTAATTATTTT
ATAA--TACATGAAAGTAAAAAGCATCATACC--ATATCTTGAATTTATACTTGTGATATATGTCAATTATTTTTCAATA
AAACTGG--AAACAAGAAAGGAATTTTGAAAATAAT---TTAAAAA---A-AACCATATGA-AATTAGCTGAAAAATATG
CTC--GGACTTAGTGT-TGAGGG
>Equus_caballus
CCCATTATTTCCTTCATTTGACCACTTCTAC-TTTTTTAA---TTTC----------TCATTT-----GC---TCAAAA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------ATCACCTTAGAAGAATTAGCTCAAACATACA
TTCTAGGGCTTAGTGT-GAAGGG
>Ceratotherium_simum
CCCA-TAGTTCCTTCATTTGAATACCTCTACTTTTTTTTA---TTTC----------TCATCT-----GC---TCAAAA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------ATCACCTTATAAGAATTAGCTCAAACATACA
TTCTGGGGCTTGGTGT-GAAGGG
>Myotis_myotis
CCCATTATTTTCTTCACTGGAACACCATTCC--TTTTTAA---TTTC----------CCATCT-----GC---TCAAAT-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------TTCACCTTATAAAAATTAGCTAAAACATATA
TTCTGGGACATGGTGG-AAAATG
>Rousettus_aegyptiacus
TTTATTATTTCCTTCACTTGAACACCTCTCC-TTCTAAAA---TTTC----------CAATCC-----GT---TTGAAA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------ATCACTTTATAAAAATTAGCTGCAACACATA
TTCTGAGTCTTGGTGT-AAAGGG
>Condylura_cristata
CCCATTAATTCCTTAATTTGAA-ACATATAC---TTTTTG---TTTC----------TCATCT-----TT---TTAAAA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------AACACCTTA-AAAAATTAGTTCAAACTTAGA
TCA------GTGGTAT-GATGAA
>Sorex_araneus
CCTATTACAT-TTTCATTTGAA-ATCTTTAA--TTTTAAA---TTTC----------TAATCT-----GC---TAAAAA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------ATCACCTTATA---------------TTATA
TTCTGAAACATGGTGTAAAAAAG
>Homo_sapiens
GCTGTTATATCCTTCATATAAACACCCCCAT--TAAAAAAGCTTTTT----------TCATCC-----GC---TCAAAA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------ATCACCGTATAAAAATTAGCTCAAACATA--
TTGTGGGACTCTGTGT-GAATGG



Dog58_LTR

>MER21C
----------------------------------------------------------------TGTGTAGGAAAAAACA
AAC-------TGTTTTTCT--------------------CTACTCTCACAACACTTCTGNCACCAAATGTGTGGGGTTTT
----------------TCCCACACACCAAGCAATTCTCCAGCGGACACCAGCTGGGTGTCCTACAATTCAATTCAATTCT
GACACTATCTACCTGGAGNTAGCGTCAGATCCCACAGGTTAAGGGCTCAGTCCCACAAGACTGCCCCCAC----------
------------------------------TTCAGACGCCAATC-GCAAGTCCCAGGTTGTGACCTGTACTTCTGACCGA
CCGGCTATAAATC-GGGGGTTCCCACGACCCCCTCCTCGGGTTCGA-TAATTTGCTAGAGCGGCTCACAGAACTCAGGGA
AACACTTTACTTACG-TTTACCGGTTTATTATAAAGGA----TATTACAAAGGATACAGAT----GAACAGCCAGATGGA
AGAGATGCATAGGGCAAG--GTATGTGGGAAGGGGCGCGGAGCTTCCATGCCCTCTCCGGGCGCGCCACCCTCCCGGCAC
CTCCACGTGTTCAGCAACCCGGAAGCTCTCCGAACCCCGT-CCTTTNGGGTTTTTATGGAGGCTTCATTACGTAGGCATG
ATTGATTANATCATTGGCCATTGGTGATCAACTCAACCTTC--AGCCCCTCTCCCCTCCCCGGAGGTCGGGG-GTGGGGC
TGAAAGTTCCAACCCTCTAATCACATGGTTGGTTCCCCTGGCGACCAGCCCCCATCCTGAGGCTATCCAGGAGCCCCCAG
CCAAGAGTCACCTCATTAGAACAAAAGACGCTCCTATCACCCAGGAAATTCCAAGGGTCTTAGGAGCTCTG---TGTCAG
GAACCGGGGTCAAAGACCAAATATTAGAACAAAAGATTCT----CCTAGCGCCCCTATCGCTCAGGAAATTACAA-GGGT
TTTAGGAGCTCTGTGCCAGGAACCGGGGGCAGAGACCAA-ATATATATTTCTTATTATATCACAATATCACA--------
-------------------------------------------------------
>Canis_familiaris
GGAT--ATGATTCTGGAGTTTGAGAAGGGCTTCTGGGCTAGGGATATAGATTT---GGGAG---TGTTCAGAAAGG--CA
GTCC------TGTGTTTCTCCCTTACTCTCACAGAGCTGCTATACTCAGAACA---------CTAGAGGTGGGTGGT---
----------------TCTCTCACAACAAGCAATTCTCTG--CAACTCCAGCTGGGTTTCCTACAATTGAACTCAATTCT
GCTACCGTGTACCTGGACATAGCATCAGAT--------------GTTCAGTCCTATAAGACCACCCCCAA----------
--------------------------GCAGTTCAGGTGCTAATT-GCAAGC-CCAG-TTGTCACCTCTATGTCTGATCGA
TCAGCTCTAAACT-GGAGGTTCCCATGACCTCCTCTTCAGGTTCCATTAATATGCTAGAGTGGTTCACAGAACTCAGGAA
AACAGTTTATTT------------TTTATTATAAAAGGA---TATGATAAAGGATACAGGTAAACAAACATCCAGAGGGA
AGAGATGAGTAGGACAAG--GTATATGGAAAGGGGCAAGGAGCTTCCACGCCCTCTGCAGTCATTCTTCTCTCCCTGTAC
CTCCATGTGTTTGCCCACCTGGAAGCTCTCCAAACTCCATACTTTTAGGATTTGTATGGAGGCTTCACCATGTAGGTGTG
ATGCATC-------------------ATTGCCTCCATTTCC--AGCCTCTTTCCCTTCTTTGGAGAGTGAGCTATGGGAT
TAAAGCTTTCAAGCTCTTAATCATG-GCTTGGTCTTTTTGGTGACCAGAGCCTATCCAGG------------------AA
CCCAGAGTTGTTTCATTATAAGAAAAGACACTGCTATCACCTGGGAAATTCCAAAGGATTTAAGAACTCTG---TGTCAG
GAACTAGGATCAAAGACCAAGTTTTAGAACAAAAGATGTT----CTTCGCACTCTAGTCACTCAGGCAATTACAA-GAGT
TTTAGGACTTTCATGCCAGGAACTGGGTGCAGAGACCAATATATATATTTTCTGTTATC--------TTACA---GGGAG
---CCATCAGAGACCCACTAAAATATGGGGTAAGTTAATTTATGGAGATTGTAAT
>Felis_catus
GGAT--GTGACTCTGGGGTTTGAGGAGGGGTTCTTGGATGGAGATATACATTC---AGGAG---TGTTTACAAAGACTCA
GTCCTTCTCCTGTGTCCT---CTTACTCTCATAGTGCTGTTACACTCAGAACA-TTCTGACGATAGAAATGTGTAGGT--
----------------TTTCTTACAACAAGCAGTTCTCTG--CAACCCCAGCTGGGTGTCCTACAATTTAACTCCATTCT
GATACTGTGTACCTGGACATTGCATCAGATCCCACAAATTAAGTGTTCAGTCTTAGAAGACCACCACCAC----------
-----------CCCCCCCCCCCACACGCAATTCAGATGCCAGTT-CCAACT-CTAG-CTGTCACCTACGCTTCTGACTGA
TTAGCTATAAACA-GGAGGTTCCCATGACCCCCTCTTTAGGTTCCATTAATTTTTTAGAGTGGTTCACAGAACTCAGGAA
AACAGTTTACTTACT--------GTTTATTATAAAAGGA---TATGATAAAGGATACAGGT----GAACATCCAGATGGA
AGAGATGGCTAGGAAAAGGTGTGTGTGGGAAAGGGCGAGGAGCTTCCACCCCTTGTGCAGGCATGCCTCTCTCCCTGCTC
CTCCACATATTTGCCCATCTGAAAGCTCTCCAAGCCCTACACCTGTAGGATTTGTATGCAGGCTTCATCATGTATGCATG
ATCCATA-------------------ATTACCTCCATTTCC--AGTCCCTCTCCCTTCTCTGAAGAGTGATGTGTAGGAC
TCAAAACTTCAAGCTTCGGATCAAG-GCTTGGTCTTTCTGGTGACCCCCACCCACCC-----------------------
-------TTGCCTCCTTAGAACCAAAGACACTGCTATCACCTGGGAAATCCCAAAGGATTTAGGAACTCTG---TGTCAG
GAACTGGGGTCAAAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNN
---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>Manis_pentadactyla
GGAT--ATGGCTCTGGAGTTTGACAAAGGGTTCTGGGATACAGCTGTAACTTT---GGGAG---TATTTAGAAAACCTCA
GCCCTCCATCTGTGTGTCTCCTTTCCTGTCATATCACTACTACCCCCACAATACTTCTGATACCAGGTGTGTATGTGGGT
GTGTGTGTGAGGGGGATTCTTCCCAACCATCAACTCTCTG--TGACACCAGGGGGATGTCCTATAATTTAACTCAGTTCT
GACACTGTCCACCTGGAGACAGTGTCAGATCCCACAAGTTAAGGCTCCAGTCCTATGAGACTGCCTCCCCCCATGCCTCC
CCATCCCCTCAACACCCCCACCCCATGCAATACAGATGCCAATT-CCAAGT-CCAGATTGTCACCTGCACTTCTGGCTGA
TCAGCTATAAATT-AGAGGTTCCTATGATCCCCGCTTCAGGTTCAATTAATTTGCTGGAATAGTTCACAGAACTCAGG--
AGCAGTTTACTTACC-CTCACCAGTTTATTATAAAAGCAGTTTAT-ATAAAGGATACAGAT----AAACAGCCAAATGGA
AGAGATGCACAGGACAAG--GTATGTGGGAAGGGGCGTGGACCTTCCATGCCTTCTCCAGGCACATCACTCTCCCTGCTC
C--------------------------------ACTCCATACTTCTAGGATTTTTATGGAGGCTTTATCATGTAGGCATG
ATTGATC-------------------ATTAACTCCATTTCC--AGCCCCTTTTCCCTCCCTGGAGAATGGAGGGTGGGGC
TGAAAATTCCAA-CTTCTAATCGTG-GCTTGATCCTTCTGGTGACCAGTCCCCTTCCAGGAG--------------CCCA
CCCAGAGTCGCCTCGCTGGAACAAAATACACTCCTATCACCCAGGAAACTCCAGTGGAGTTAGGAACTCTG---TGTCAG
GACCCTGGGTCAAAGATTAAATATTAGAACAAAAGAGGTTGCTAGTTAGTGCTCTTATCACTTTGGAAGTTCCAG-GGGT
TTTTGGAGCTCTGTGACAGGACCTGAGGGCAGAGACTAATATACGTATTTTCTGTTATC--------TTACA---CGGAG
---TCGTCAGAGACCCACTAAAATATGTAGCAAGTTAATTT---GAGATAGTAAT
>Condylura_cristata
GGAT--ATAACTCTGGAACTTGAGTAGGGG-TCCAGCATAGAGGTATAAATTT---GAGAG---TGTTTAGGGAATTTCA
GTCCTCC-TCTTTATACTTTCTCAGCTATC-CCCAACTGTCATACTTGCAAC--TTCTGATACCAGCTGCGTGGGGCATT
----------------TTCTGCACAACAAATATATCTCTG----ACAAAAGCT-GATATCTTACAAATTAATAAAAATTT
G--ACTATCTACTGGGAGATGGATTGAAGTTCCACAGATTCAGGGGCCACCCCCA--------CCCCCACATAT------
-------------------CTCTTGTGCAGCTCAAATGCCAATTAGCAAAT-CTAG-GTGTCACACATGCTTCTGACGTA
TCATC---------AGAAGTTTCCATGACGTCCTCTTCAGATATGATTAATTTACTAGAATGGTTCACAGAATTTAAGAA
A--AGTTTACGTACTCTTTGCCAGTTTGTTAGAAAAGAA---TATGATAAAGGGTAT-GAT----GAACACCCAAATGGA
AGAGATGCAAAGGTCAAA--------------AGGCACGGAGCTCCCATGTTCT-TCCAGTTGCCTCA---TGCATTACC
CCTCAAGTATTAGCAAACCTGGAAGCTCCCAAAACACTGTATTTTTAGGATTTGGGGGGAGGCTTCCTCACACAGTAATG
ATAGCTC-------------------ATTAATTCCATTTGCAGAGCCCTTCTCCCTTCTCTGGGCG--------------
-------------CTTCTAATCA---GACTTGATTTTCTGGTG-CCAGACCCCATCCAGG--------------------
-----GGTCATCTTAGCAGAACAAAAGACACTGCCATCACC-AGGAAATTCCAAGGGATTTAGAGGCTCTGTGATGTTAG
GAACTGGGGTCAAAACCCAAATATTAGAATAAAAGATGCT----CTTAGTACTCTAATCAGTTAGGAAATTACAA-----
-----------------GGAATTGGGGGACACAGTCCAATA-ATATATTTTCTGTTGTC--------TCACA---GGAAG
---TCATCAGAGATCCACTAAAATATATAGCAAGTTAATTTATTGAGATAATAAT
>Solenodon_paradoxus
GGCC--ATGACTCTAGAGTTTAAGAAGACAGTCTGGGATAGTGATGTAAATTT---GGGAG---TATGTAGAAAACTTTA
GTCTTCA---TGCATTTC-------CTCTCACACTGCTACCACACTCACAATAGTTTGAACACCCAATTGATGTGGAGTT
----------------TTCTCCGTAATTAGAAATTCTCTG--CTACACCAGCTAAATTTCCTAGAATATAACTTAATTCT
GACACTGTCTTCCTGGAGCTAGAGTTAGATCCCACAGA------ATTCAGTCCTACAATGCTACCCCCTT----------
--------------------------GCAGTTCAGATGCCAATC-ATAAGT-CCAGGCTGTCACCGTTGCTTCTGACCCA
TCAGTCATAAATCAGGAGGATCCTATGACCCCTTGTTCAAGCATGATTAATTTGCTAAAGAAGTTCACAGAACTCAGAAA
AACAGTTTGCTTACTGTTTTTCAGTTAATTATGAAA------TATGATAAAAGATCTAGAA---TGAATATCCAAATGAA
AGAGATGCAAAGGA-AAG--GTATGTGGGA--GGGTACAGAGGGTTCCTGTTCTTTCTGGGTGCCTGACTCTCCTGGCGC
CTCCTTGTGTT-----------GAGCTTTCCAAACCCCATA---------------------CTTCATCATGTAGGCATG
CTCAGCC-------------------CTTAACTTCATTTCC--AGTC-CTCTGCCTTCTCTGGAGAATGATGTA------
-------------------------------------------------------CCAGG--------------------
-CAACAGTCACCTCATTAGAGCAAAAGACATTGCTGTCCCTCAGTAAATTCCAAGAGATTTAGGAGCTCAG---TGTCAG
GAACTGGGGTCAAAGAATAAATATTAGAACTAAAGATGTT-----------CTCTTATTACTTAGAAAATTAGGGTGCAC
ATATACATATACATTTCAAAAACTCTATCAATATTGACATGTAGAAATATGTTGTTATT--------TCACA---GGGAG
---TCATCGGAGACTCACTAAAATAGGTAGTGAGTTAATTTATTNNNNNNNNNNN
>Sus_scrofa
GAGT--ATGACTCTGGAGTTTGAGAAGAGAGTCTGGAATAGAGATATAAATTT---GAGGG-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---TTACCAGAAA-CCACTAAAATATGTAGCAGGTTAAT-TATG--GATAATAAT
>Vicugna_pacos
GGGT--ATGACTCTGGAGTTTGAGACGGGAGTCTGAAA-AGAGATATAAGTTT---GAGAG-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---TCATTGGAAACCCACTAAAATATGTAGCAAGTTAA--TATT--GATAGTAAT
>Equus_caballus
GGAT--ATGACTCTGCAGTTTGAGAAGGCAGTGTGAGATCGAGATATAACTTT---GAGAG-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---TTATTAGAGACCCAAGAAAATATGTAGAAAG-TAATTTATT--GAGAGTAAT
>Ceratotherium_simum
GGAT--ATGACTCTGGAGTTTGAGAAGGAGGTCTGGGATTGAGATATAACTTT---GCGAG-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---TCATTAGAGATCCACTAAAATATGTAGAAAGTTAATTTATT--GATAGTAAT
>Miniopterus_natalensis
GGAT--ATGA--CTGGAGTTTGAGAAGGAAGCCTGGAATGGAGATATAAGTTG---GGGCG-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---TCGGCAGAGACCCACTAAGATATGTAGCAAGTTAATCTATT--AATAG-AGC
>Pteropus_vampyrus
GGAT--ATGACTCTGGAGTTTGAGAACGAAGTCAGGAATGGAGATATAAATTT---GGGAG-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---TCATCAGGGACCCACTAAGATATGTAGCAAGCTAATCTACT--GATAGTAAC
>Homo_sapiens
GTATACATGACTCTGGAGGTTGAGA-GATGTTCTAGGATAAAGATATAAATTT---AGGAG-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---TCACCAGAGACTCACTAAAATACATAGCAAGTTAATTTATTGAGATAGTTAT



Dog59_LTR

>CARERVR1_LTR
-------------------------------------------------------------------------------T
GTTGGGGAAGGTCATCGAGAAGACGTGACCGCCGGTTGACCCGTGAGCTGGACCC-------------GGGCAATCAGAG
GCTCCTCACCCCCTCCCCTGTCCTTGGAATGT--------GGGTTCCGCTTGCCTTCCCCGCTCCCAGAGGCTGCTCCAA
GGACACAGCCTTGAGATAGTGATGT--------GGTGTTGAGAACACCTGNACGGTATACGTGACTGAACCCAGTTAAGG
CCTCTATATAAACTTTTAAGATT-TGGCGGGCGGGTGCGGAGATCTACTCGTCTTGCTGCCGCCCAAGACAAGCCTCG--
-TATGTAAGTTCCCTTTGCTTATTAAANC-TGCCACCTACCAACCTGGAGTGGCCTGCCTCTTTCTTCGGTCTCTCCCTG
CCCTCTGCGTACGGGGGCCGGTTTCAGA--TTACACCCGGGAAGCTCCCGAGGGGGTTGCGAACCAACA-----------
------------------------------------------------------
>Canis_familiaris
TTGTTGAAGCCAAGGAGAAGGAGGTAGA-CCCCCATACCAAGCAAGTCTTTTGTCCAT---TTGGATA---CTCAG---T
GTTGGAGGATGTTGTCAAGAGAATGTAACCACCAGTTGACCCAGGAGCTGGACCT-------------GGGCAGTCAGAG
GCTCCTCAGCCCCTCCCCTGGCTTTGGAAGAT--------ATGTTCTGTCCACTATTCTCATAGTGGGAGACGTTTTCAA
GGATGCACCCTTGAGAGAACAATGT--------GTTGTTGAGACCATCTGGACAGTATATGTGACTGAACCCAGTT-AGG
CCTCGATATAAACTTTTAAGATTCTTGCAGGCCAGTATAGAGACCTACTCATCTTGCGGCTGCTCAAGACAACCCTTA--
-TATGTAAGTTCTC-TGGATCATTACACT-TGTCACCTCCCAATCTAGAGTGGTCTGCTTCTTTCTTTGGTCTCTCCTTG
CTTTCTTTCTACAGGGACCAGCTTTTAAACCAGCA-------------------------------------CTCAG---
AAAAC----TTTCAT----TGACTAATCCTGACATGATGACTAGAAAATAGATG
>Felis_catus
TTGTTGAAGCCAAGGAGAAGGAGATAGC-TCCCC-CATCAAGCAAGCCTTTTGCCCAT---TTGGATG---CTCAG---T
GTTGGAGGAGGTCATTAAGAGGACATGACCTCTGATTGACCCATAAGCTTGACCT-------------GGGTAATCAGAG
GCTCCTGACCTCTTCCCCTGGCCTTGCAATAT--------ACATACGGTCCATTATTCTCACAGTGAGAGATGTTTTCAA
GGATGCAGCCCTGAGAAAGCAATGT--------GTTGGTGAGACCATCTGGACCGTGTATGTAACTGAACAC-----AGG
CTTGTATACAGACTTTTAAGATTCTCACAGGCAGGTATAGAGATCTACTCATCTTGTGGCTGCCCAGGAAAAGCCTCA--
-TACAGAAGTTCTC-TTGCTCATTAAACCTTGACATCTACCAATCTAGGGTGGCCTGCTTCTTTCTTTGGTCTCTCTTTG
CCTTCTTTGTATGGAGGNNNNNNNNNNNNNNNNNN-------------------------------------NNNNN---
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>Manis_pentadactyla
TTGCTGGG---------------------CCCCTATACCAAGCAAGTCTCCTGTCTAC---TTGGGTG---CTCAG---T
GTTGAAGGAGGTCA---AGAAGGCATGACCACCAGTTGTCCTGTGAGCTGGACCC-------------AGGCAAACGGAG
GCTCCTCA-CCCCTCCCCTGTCCTTGGACTGTCCTCGTCCCTTTCCCGTGCACCCTTCCCTCAGTGGGTGTTATTTTCAA
GGATGCAGCCCTGGAAGAGCACTGTGGCGTTGCGTTGTTGAGGCCATCTGGGTGTTGTGCGTGACTGAACCCTGTTCAGG
TCTCTCTATAAACTTCCGAGGTTCTGGTGGGTAGCTGTGGAGATGTACTCATCTTGCGTCTGCCCAAAACAAGCCTTGGC
TTATGTAGGTTCCC-TTGCTTATTAAACC-TGCCCCCTACCAGTCTGGAGGGGTTTGCCTCTTTCTTCGGTCTCTCCTTG
CTCTCTGTATATGGGGGCCAGCTCGTGAACCAACA-------------------------------------CTC-----
AAAAG----TTTAGTGAACCAACTTATCCTGATACGGTAGCTAGGAAATATATG
>Equus_caballus
TCGTTGAAGCCAAGGAGAAGGAGCCAGGCTCCCAATACCAAGCAAGTGTTTTTCCCAC---TAGGGTA---CGTAG---T
GTTGGAGGAGCCCAATGAGAGGACATCACCACTGGTTGATCCAAGAGCTACACCTGAGAGCTAGAGCCGGGCAATCAGAG
GCTCCTCA-CCCATCCCCTGTCCTTGGAATGT--------GTGCTACAACCACTATTACCACAGTGGAAGCTGTTTTCAA
GGACGCAGCCTTGAGAGAGCATTGT--------GTTGTTGAGACCAACTGAA-----TACATGACTGAACCCAGGTAAGG
TCTCCATATAAACTTTTAAGATTCTGGCAGTCAGGTGTAGAGATCTACTCGTCTTGTGGCTGCCTAAGACAAGCCTCA--
-TCTGTAAGTTCCC-TTGCTTATTAAACC-TCCCACCTATCATTCTGAAGTAGTCTGCTTCTTTCTTTCGTCTCTCCTTG
CCCTCTGCGTTCGGGGGCCAGTTTTCGAACTAACA-------------------------------------CTCAG---
AAACA----CTTAATGAATTAACTTATCCTGATACGGTGGCTACGAAATATATG
>Ceratotherium_simum
TTATTGAAGCCAAGGAGAAGGAGCTAGGCTCCCAAGCCCAAGCAAGTATCTTGCCCAC---TTGGGTG---CTCAG---T
ATTGGAGGAGGTCATTGAGAGAATGTGACTGCTGGTTGACCTGAGAGCTAGACCC-------------GGGCAATCGGAG
GCTCCTCA-CCCCTCCCCTGTCCTTGGAATGT--------ATGTTCTGACCACCATTCCTACAATGGGAGCCATTTTCAA
GGACACAGCCTTGTGAGAACAATGT--------GTTGCTGAGACCATGTGGATGGTATATGTGACTGAACCCAGTTAAGG
CCTCTATATAGACTTTTAAGATTCTGGTGGGCGGGTATGGAGATCTATTCATCTTGTGGCCACCCAAGACAGGCCTCA--
-TACGTAAGTTCCC-TTGCTTATTAAACC-TGCCGCCTACCAATCTGGAGCGGT----TTTCCTCTTTGATCTCTCCTTG
CCCTCTGAGTTTGGGGGCCAGTTTTCCAACCAACA-------------------------------------CTCAG---
AAAAG----TTGAATGGGCTAACTTA-CCTGATACAGTGGCTAGGAAATATATA
>Sus_scrofa
TTGCTGAAGCCAAGGTGTAGAATCTAGG-TCTTAATATCAAGCAGGTCTTTAGCCCAC---CTGGGTG---CTCAG----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
AAAAG----TTTAGTAAT-GAACTTATCCTGAGACAGTGGCTTGGAGATACA-G
>Bos_taurus
TTGTTGAAGCCAA---CCAGAATCTGTG-TCCCAATACCAGGCAAGATTTTTGCCCAC---CTGGTTG---CTCAG----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
AAAAG----TTTAATGCCTGAACTGATCCTGATACAGTGGCTTGGAAATATATG
>Myotis_myotis
TTGTTGAAACCAAGGAGCAGTATCTAG--TCCCAATGCCAAGCAAGTCCTTTGCCTAC---TTGGGTA---CTCTG----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
AAAAA----TTTCATAAACAAA--TACACTGTTACCGTGACCAGGAAATATACG
>Rousettus_aegyptiacus
TTGTTGAAACCGAGGAGCAGGATCTAGG-ACCCAATACTAAGCAAGTCTTTTGCCCAC---CT-GGCG---CTCGG----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
AAAAA----TTTAATGAACAAA--CATCCTGTTATAGTGGCTACGAAATATATG
>Condylura_cristata
TTATTGGAGTCAAAGACTAGGGTTGATG-TCTCAATACTAAGCAAGCCAGAATCCTATATACTGGGGA---CTCTG----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
AAAAA----TTCAATTAATGAAATCATCCTGATATGATGGCCAGAAACT--ATG
>Erinaceus_europaeus
TTGTTTCAGGTAAGTAGCTGCATCTTGG-CCCCAAAACCAAGCATATCTTTTGTAC-----TTGGGTG---CTCTG----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
AAAAAAAAATGTGATGCTCATGATTATTCTGACATGAACGTAACAAAATACATG
>Homo_sapiens
TTGCTGAAACCAAGGAGCAGAAACTAGG-CCCCAGTGCCAAGCAATTCTTTAGCCCACT--TTGGGTG---CTCAG----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
AAAAA----TTCAATAAAAGAACTTATCCCAATAGGATGGCCAGGAAAAATATG



Dog60_LTR

>CARLTR7
--------------------------------------------------------------------TGTCGGGG-AGC
AAGAATT---CCTGTCCCCTTCAAGGTCCTTCTAGCTGGACT-AAGAATCAAATTGACATGAGACAGATTAACA------
---------GGAGAAAATCAAATTTAATAGCGTACGTACGGGGAATCCACACAGACATGGAAATTCCAAAGACAGTCAGG
CAAAATGAGGTNTATATGTCATCCTGAACTAAGGAGAAGGGGGTAGGGGTCTGGGACTTCAGA------GGAAAGG----
AATGCANTTCACAGGGCGATAAGAAGAGCAGATGTTTGGTAATTAGATGTTTGCCCTGCCATACAGATGGGTCACTCA--
----------GATAAAATTTATCTC-------TGCTA--ATAACCCTTATTCTGGGAAAGAC-CC---CCAATTTAGATT
CTTCTATGTAGTTAAGGGAGGGGC-AAAAGTTTCTCTTGAGCCCGCAGGGTCTCGATTGCCTTCAGCTCAAAATAATCTT
CATGCCAAAGTGGCCCATCTTGGGGCGGCCTGCCCTCGGCCCCTACA---------------------------------
---------------------------
>Canis_familiaris
CCTTTGTATCCATATCATCTTGGTTTTCAAACAGCCATGCTTTT-ATATTATCATTTG---ACAC---TATAATGGCAGA
TACATTTTCCCTTCTTCTCTTCTAGGTTCTT-GAACTGACCT-AATAACTAAATTGACATAAGACAAATTGACA------
---------GGAAAAAAATAAATTTAATTTTGTATATAC-AAGAACC-CCAAAGATATGAGA--CTCAATAGCAGTCAGA
G-AACTAAGGCTTAGATGCCTCCCCGAGCTAGGGAAT--GAGAT-GGGGCATGGGGCTTCCAAGTATGGGGGGGAGGGTA
GGGGCAACTCACAGAAAGATAACAAGAGCTGATGTTTGGTAATCAGATGTTTGTCCTGCCATGCAGATAAGTCTTTCAGA
T-------AAAAAATAAGTTATCTC-------TGGTA--ATAGCTGTCTTTCTGGGCCAGGGCCC---CCTATCTAAATT
CTCTAAGGCAGTTAAGGGATAGGT-AAAAGTTTTTCTTGAGTCTGCTGGCTTTTGGCTGCCTTCCACTCAAAGCAATCCA
CATACTAAAGTGGTCCCTTTCAGGGGGGCGTGCTCTGCTTCCGTGCA---ACAC---CAAACACTACTTTTCCTTGTCGG
TCACAACTCAGCTTACAGAATGAGTAT
>Felis_catus
CTTTTGTGTCCATATTATTTTGGTTTTCAAGCAGCCATACCTTT-ATATTATCATTTG---ACAG---TATAG-------
--------------------TCTAGGTTCCT-TGGCTGGTCTAAATAATTAAGTCAACATAAAACAAGTTAACAACAACA
ACAACAACCAAAAAAACCTAAATGTAATTCTGTACAAAC-AAAACCCTCCAAAGATATGAGA--CTCAGTGGCAGTCAGA
G-AATTGAGGCTTATGTGCCATCCTGAGCTAAGGAAT--GTGCTAGGGGTCTGGGGCTTCCAAGTGTGTATGGAGG----
GGGGCAACTCACAGGAAGATAACAAGAGCCCATGTTCAGTAATCAGATGTTTTCCCTGCCATGCAGGTAGGTCTTTCA--
--------AGAAAAAATGCTATCTC-------TGGTA--ATAGCTCTCTTTCTGAGCCCGGA-CG---CCTATCTAAATT
CTTTAAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNN---NNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNN
>Manis_javanica
CTTTTATATCCCTGCCATCTTGGTTTTTAAGCAACCATATTTTT-ATATTACCTTATG---ACAC---TAGAGGGACGGA
AAAAAATTTCTCTTCCTCCCCTTTAGGTCCTTTGGCTGGTCT-AATAATTAAGTTGACATACAACAGAGTAACA------
---------GGAGAAAAACAAATTTAATTTTGTATGTAT-GAGAGCC------------------TCACAGGCAGTCAGG
C-AGTTGAGGAACGCACACCATCCTGAGCTAAGGAAT-GGGATTAGAGGTCTGG-GCTTCAGA------GGGCAG-----
AAGGTGATTCACAGGAAGATAACCAGAGTGGACTTGGGGTAATCAGATGTTTTCCCTGCCATGTGGGTAAGTCTTTCAGA
TTTTTAAAAAAAAAATGGTTTTCTC-------TGGTAATATAGCTCTCTTCCTAGGCCAGG--CCTTATCTATCTAAATT
CTTTTAAGCAGTTAAGACAGAGGC-AAAAGATTTTCCTGAGTCTCCTGGGACTTGATTGCCTTCAGCTCAAAATATTTCA
CATGCCAAAGTGGCACATTTTGGGGTAGCATATTCTGCTCTCCTTTG---ACAC---CAAATATTACTTTTCCTTATTTA
TTACTGCTAAACTCCAAGAATGGGTAC
>Equus_caballus
CTTTTGTATCCGTACCATCTTGGTTTTCAAGAAGCCACTCTTTC-ATATTATCATTTG---ACAC---TGTTGGGGCAGA
-AAATTTTCCCTTCTTCTCTTCCAAGTTCTT-TGGCTGGTCT-AATAATTAAATTGACATAAGACAGATTAACA------
---------AGAGAAAAACAAATTTAATTTCATACATAC-AGGAGCC-CCAAAGGCATGAGA--CTCAAAGGCAGTCAGG
C-CGTTGAGGCTTGGATGCCATCCTGAGCCAAGGAGAAGGGGGTAGGGGCCTGGGGCTTCAAA------GGGGAGG----
AAGGCAGTTCACAGGAAGACAGCAAGAGCAG-TGCTGGATAGTCAGATGTTGGCCCTGCTGGGTAAGTAAGTTTTTCA--
---------GGTAAAAAGTTATCTCTCTTTCTTTCTG--ATAGCTCTCTTTCTGGGTCAGG--CC---CCTATCTGAACT
CTTTTAGGCAGTTAAGGGAGAGGT-AAAAA--CTTCCTGAGTTTGCTGGATCTTGATTGCCTTCAGCTCAAAACAATCCA
CATGCCAAAGT-GCACATTCTGGGGTGGCACATTCTGCCCCCTCA-----ACAC---CAAATACCACTTTTCCTTACAGA
TCATAGCTAAATTTCTGGAGTGGGTGC
>Ceratotherium_simum
CTTTTGTATCCGTACCATCTTGGTTTTCAAGAAGCCACACTTTT-ATATTACCATTTG---ACAC---TGTAGGGGCAGA
-AAATTTTCCCTTCTACCCTTCCAGGTTCTT-TGGCTGGTCT-AATAATTAAATTGACATAAGATAGATTAACA------
---------GGAGAAAAACAAATTTAATTCCATACATAC-AGAAGCC-CCAAAGATATGAGA--TGCAAAAGCAGTCAGG
C-AGTTGATGCTTAGATGCCGTCCTGAACTAAGGAGA-------AGGGGCCTGGGGCTTCAAA------GAGGAGG----
AAGACAATTCACAGGAAGATGAGATGAGCAGATGTTTGGTAAACAGATGTTGGCCCTGCCATGTAAGTCAGTCTTTCA--
---------GGTAAAAAGTTATCTC-------TGGGA--ACAGCTCTCTTTCTGGGCCAGG--CC---CCTATCTGAATT
CTTTCAGGCAGTTAAGGAGGAGGTAAAAAGCTCTTCCTGAGTCTGCTGGGTCTTGA------------------------
-GTGCCAAAGTGGCACGTTCTGGGGT-GTATATTCTGCTCG---------ACAC---CAACTACCACTTTTCCTTACAGA
TCATAGCTAGATTTCCGGAACAGGTGC
>Myotis_myotis
CTAT----ACTATACTATCTTGGTTTTCAAGCAACCATGTTTTTGACATTATCATTTG---ACAC---TGTAGGGACTCC
AGAATTTCCCCCTTCTCACCTTCAGGT-------------CT-AATAATTATACCGACATAAAATAGATTAACA------
---------GAAGAAAAACAAATTTAATTTCTTTTGTAT-AGGAGCC-CCCAAAATATGAGA--CTCAAAGACA-TCGGG
C-AATTGAGGCTTAGATGCCATCCTGAGCTAA--------------------GATGCTTCAAAA-----GGGGAGG----
CGGGCAGTTCACAGA---ACAAGAAGAGCAGATGTTTGGTAATGAGATGCTACCCCTGCCATGCAGGTAAGTGTTTCA--
-----------GACAAGGCTACCTG-------TGGTA--ATCGCTCTCTTTCTGGGCCAGTC-CC---CCTCTCTAAATT
CTTTTAGGCAGTTCAAG---------------------GGGTCTGTTGGCACTTGATTGCCTTCAGTGCAAAATAATCCA
CATGCCAAAGTGGCACATTTAGGGACCGCCTAGCCAGCTCCCCTTCA---ACGC---CAAACACTGCTTTTTCTTACTTA
TCACGGGGAAACTTCTACTATGGGTTT
>Rousettus_aegyptiacus
CTTTTGTAGCCGAACCATCTTGGTTTTTAAGCAGCTATACTTCT-ACATTATCATTTG---ACAC---TGTAGAGGCAGA
AGAATTTTCTGTTCTTCCCTTTTAGGTTATT-TGGCTGGTCT-AATAACTAAATTAACAGAAGACAAATTAATA------
---------GGAGAAAAACAAATTTAATTTCTTATGTAT-GGGAACC-CCACAGATA--AGA--TTCTAAAGCGGTCAGG
C-AATTGAGGCTTACATACCATCCTGAGCTAAGCAAT--GGAATAAAGGCCAGGAGCTTCAAA------GGTGGGG----
AGGGCAATTTGCAGGAAAATAACAAGAGCAGGTGCTTGGTAATCAAATGTTTG-CCTGGCATGCAGGTAAGTCTTTCA--
--------GAAAAAAAAGTTATCTC-------TGGGA--GCAGCTCTGATTCTAGGCATGCT-CC---CTTATCTAAATT
CTTTTAGACAGTTAAGGGACAGGT-TAAAGGTTTTCCTAAGTCTGCTGG-TCTTGGTTGCCTTCAGCTCAAAATAATCCA
CATGCCAAAGTGGTACATTTTGGGGCAGCCTATCCTGCTCCTCTTCA---ACAC---CAAGTATGACTTTGTCTTATTTA
TCATGGCTAAACTTCTGAAATGGGTGT
>Sus_scrofa
CTTTTGTATTTGTGCCATCTTGGTTTTCATTGTGCCACACTTTT-ATATTATGATTTG---ACAC---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------CAAACACTGCTTTTCCTTATTTG
CCATGGCTAAACTTGCAGAG-GGGTGC
>Bos_taurus
TTTTTGTATTTTTGCCATGTTGGTTTTCAAGCTGCTATACTTTT-ATATTATTATTTG---ACAG---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------CAAACACTACTTTTCCTAATTTG
TCATGGCTAAATTTCTGAAAAGTGTGC
>Condylura_cristata
CTTTTACATTCATGCCATCTTGGTTTCCA-GCAGTCATGTTTTT-ATATTATCACTTA---ACAT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------CAAATAT--CTTTCCTTTCCTTA
TCACAATGAAATTTCTAGAGTGGCTGC
>Erinaceus_europaeus
CTTT-GGATGCATGCTATCTTGGTTTATGAGCACATGTGTTTTC-ATGTTATCATTTG---ACAC---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------CAAATAATACTTTTTCCTATTTA
TCATGG-TAAACTTTTGTAATGGGTGC
>Homo_sapiens
CTTTTGTAGTTACAGCATCTTGGTTTTCAAGCTGCCATTATTTT-TTATTATCATTAG---ACAC---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------CACATCCTACTTTTCTTTCTTTA
TCACAGCTCAACTTCTGGAATGGGTAT



Dog62_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
------------TTTTTCCA-----GCTTTATTGAGGTATAATTGACAAATAAAAATTG--TATA-TATTTAAGGTGTAC
AACGTGATGTTTTGATATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATA
GTTACCA---TTTTTTTGTGTGTGGTGAGAAC------------------------------------------------
--------------------------------------------------------------------------------
------------------ACTTAAGATC---TACTCTCTTAGCAAATTTCAAGTATACAATACAGTATTATTAACTATAG
TCACCATGCTGTACATTAGATCTCCAGAACTTATTCATCCTGCATAACTGAAACTTTGTA--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------
>Canis_familiaris
AGAAGATTCAGTTTAGCACCTGGCTCTTTGTCATC--CCGTCTTGACC------------------------TCTA---A
TGGTTT---A---------------TTTTTACTGAGGTATAGTTGACATAT-AACATTA--TATT-AGTTTCAGGTGCGC
AACACAATGATTTGATACTTAGATATATTGCAAAGTGATCACCACAGTAAGTCTGATTAACTATACTGTTACTATACTGA
GTTACAAAA-TCTTTTTTCTTGTGATAAGAAC------------------------------------------------
--------------------------------------------------------------------------------
------------------TTTTAAGATC---TACTTTCTTACCAATTTTTAAATATGCAACACAGTATTATTAACTGTAG
TCACTGTGCTGTACATTTCAT----------------------GTGATTGCAAGTTTGTAAAGTCAAATGAA---CTG--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------ATCGTCT---TTAACT-T
ATGTACATATTTATCTGTGAAACT-GTAAAATGTTTGAGGGAGGGG
>Felis_catus
AGGAAATTCAGTTTAGTACCTGGTTTTTTGTCACC--CTATCTTGACC------------------------TCTA---A
TGGTTT---ATATTATTTTA--------TTTTTGAGGTATAATTGACTTAT--ATATTAGTCATT-AGTTTCAGGTGTAT
AAGATAATGATTCAATATTCACATGTATTGCAAAATGATCACCCCAGTAAGTCTAATAAAT--ATCTGTCACCATACACA
GTTACAAA--TTTTTTTTCTT---ATAAGAAC------------------------------------------------
--------------------------------------------------------------------------------
------------------TTTTAAAATC---TACTCTTTTAACAATTTTCAAGTATGCAATACAGTATTATTAACTATAG
TTACTATTCTGTATGTTTCTT----------------------GTGATTACATGTTTGTAAAGTAATGTAAA---CTC--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------ATGGTTT---TTAACTAT
GTGTATAGATTCATCTGTGAAACT-GTGAATTATTTTAGGGGAGGG
>Manis_pentadactyla
ATAAGATTCATTTTGGCATTTGGCTCTTTTTTATC--CTTTCTTGATT------------------------GCTA---A
TGGTT----A-TTTATTTTA------TTTTATATAAGTATAATTGACATGT-AACACTA--TATT-AATTTCAGGTGTAC
AACATAGTGATCGATTATCTGCATATATTGCAACATGATCACCACAATATGTCTAGTTAAC--ATTCATCACCAAAAATA
GTTA------GTTTTTTCCTTGTGATGAGAAC------------------------------------------------
--------------------------------------------------------------------------------
------------------TTTTAAGATC---TACTTTTTTAGCAACTTTCAAATATGCAATACAATATTATTAACTATAG
TCACCATGTTGTACATTACAT----------------------GTGATTACATGTAAATG---------------CCA--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------ATGGCTT---TTAACTAT
AATTACAAATTCGTCTGTGAAACT-GTAAATTGTTTGAGGGAAGGG
>Sus_scrofa
GCAAGATTCAGTTTAGCACTTGGGTCTTTGTTGTT--CTATCTTGATC------------------------TCTA---A
TGGTCT---ATTTTATTTTATTATTTTTTAATTGAGGTATAATTGATATAT-AACATTA--TATTAAGTTTCAGGTATGT
AACCTAATGATTTGATATTTGTATACATTGCAAAATAATCACCACAGTAAGTCTAGTTAAC--ATCTGTGTTCATATATA
GTTACAAAACTTTTTTTTCTTGTGATGAAAAC------------------------------------------------
--------------------------------------------------------------------------------
------------------TTTTAAGATATAGTACTCTTTTAGCAACTTTCAAATATACAA-----TATTGTTAACTAT--
-CACCATGCTGTACATTACAT----------------------GTAATTACATGTAAAGA---------------CTATT
TTTTTTTCTCATCTTTTTAGGCTGCACCTGTGGCATATGGAAGTTCCCAGGCTAGGGGTTGAATTGGACCCCAGCCTATG
CCACAGCCCGGCCCCTACCCCACAGCTCATGGGAATGCTGGATCCTTAACCCACTGAGCAAGGCCAGGGGTTGAACCTGC
ATCCTCATGGATGCTAGTTGGGTCCATTACCACTGAGCTACGACAGGAAAGTTTAAAGGCTAATGGTTT---TTAACTAT
AAGTACACATTCATCTGTGAAACT-GTAA-TTGTTTGAAAGAAGGG
>Bos_taurus
GTAAGAAACAGGATAGCACTTGGCTGTTTGTTGTT--CTATCTTGATA------------------------TCTA---A
TGGTTT---A-TTTATTTTATTATGTTTTTATTGTGTTATAATTGACATAT-AACATTA--TATT-AGCATCAGGTGTAT
AACATAATGATTCAATATTTGTATGTATTGCAAAATGATCACCACAGTAAGTCTAATTCAC--ATTCATCTTCATAC--A
GTTACAGAACATTTTTTTCTTGTGATGAGAATTTTTTAAGATCTACTCTTGGGACTTCCCTGGCAGTCCAATGGTTAGGG
CTCTATACTTCTACTGCAAGGGGGCACAGATCCGATTCCTGCTTGGGGAACAAAGATCCTGCATGTCTCAAGGCATGGCC
AAAAAAAAAAAAAAAAAATTTTAAGATC---TACTTTCTTAGCAACTTTCAAATATACAATACAGTATCATTAATTATTA
CCA-TATGCTGCACATTACAT----------------------GTAATTACATGTTAAAGA--------------CTA--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------ATGGTTT---TTAACTAT
ATGTTCCTATTCATCTGTGAAACT-GTAAGTTGTCCAAAGGAGGGG
>Equus_caballus
GTAAGATTCAGTTTAGCACTTGGCTGTTTGTTGTC--CTGTCTTGGTC------------------------TCTA---A
TGGTTT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------TTAACTAT
GTGTATGGATTCATCTGTAAAACT-GTAAATTCTTTGAGGGACAGG
>Ceratotherium_simum
GTAAGATTAAATTTAGCATTTGGCTCTTTGGTGTC--CTGTCTTGGTC------------------------TCTA---A
TGGTTT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------TTAACTAT
ATTTACAGATTCATCTGTAAAACT-GCATATTGTTTGAGGGA-GGG
>Myotis_myotis
ATAAGTTTTAATTTAGCCCTTGGCTCTTTGTTGTC--CTATCTGGATC------------------------TCTA---G
TGGTTT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------TTA-CTAT
ACATTCTCA--CATCTGTGAAATTGGTAATTTGTTTGAGGGA-GGG
>Rousettus_aegyptiacus
ATAAG------TTTAGCACTTGGCTCTTTGTTGAC--CTATCTTGATC------------------------TCTA---A
TGGTTT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------TTAACATT
ACTTTTTCA--CATCTATGAGTTC-TTAAATAGTTTGAGGAAAGAG
>Condylura_cristata
ATCAAACTCAATTTAGTGCTTGGCTCTCTGTTGTC--CTATCATG---------------------------TCTA---C
TGGTTT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------TTA-ATAT
AAGGACAGTTTTTTCTGTGAAACT-GTACATTGTTTGAGGGAAAGG
>Solenodon_paradoxus
ATAAAATTCACTTTCACACTTGGATTTTTGTTGTC--CTGTCTTGATC------------------------TCTG---A
TGGATG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------TTAACTAT
A----CACATTCATCTGTGAAACT-GTAAATTGTTTTATCATGGGG
>Homo_sapiens
ATAAGATTCAGCTTATCACTTGGCTCATTGTTGTTCTCTGT--TGATCGCAACATGTACGGATTCTATATGTACAA---A
TG--TT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------TTAGCCAT
AGGTACAGATTCATCTGTGAAACT-GTAAATTGCTTGAGGAAAGCA



Dog77_LTR

>MLT1A0
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------TGCTATGGTCT
GAATGTT-TGTGTCCCCCCAA-------AATTCATATGTTGAAA-----CCTAATCCCCAATGTGATGGTATTAGGA-GG
TGGGGCCTTTGGGAGGTGATTAGGTCATGAGGGCGGAGCCCTCATGAATGGGA-TTAGTGCCCTTAT-AAAAGAGACCYC
AG-AGAGCTCCCTTGCCCCTTCCGCCATGTGAGGACACAGTGAGA----AGGCGCCGTCTATGAACCAGGAAATGGGCCC
TCACCAGACACTGAATCTGCCGGCGCCTTGATCTTGGACTTCCCAGCCTCCAG--------------AACTGTGAGAAAT
-AAATTTCTGTTGTTTATAAGCTACCCAGTCTATGGTATTTTGTTATAGCAGCCCGAACAGACTAAGACA----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------
>Canis_familiaris
GCTCAT-GCTCTAAAGCACGCGCTGTGGGCAACGCCACTGCTATCACACCTGCTGCAACCAGCTGGCAAAACTGAAGTGT
GTCCC-TTG-CTGGGCAAAATCAACCCAATG-CCTCGGACATCTGCAAGC--TAC--------AAAGGAACTGCTATTTC
TTAAGGTAGA--CTTTGCTAATGGAGCT-ACATTTTCTCTTAA-TCAT------AACAGT-ATATGCCAAAC-CAACTCT
CCTAA----AACAGTGTTAAAGTAGAGT-AAGGGCCTTAATGAGTCACA-TCAGGACATGAGGCAACAGCACT-ACCCTC
ATCTT--GTGCCTCGTTCTGGTGGACATTTCTGCCT-AAGCAGCTCTAAGC---ATACATTAACACGATACAATCTGGCA
CAA---CCTCAAGGATTCA-CTGTGCAGGGCACAA---AATAGAGCTTTATTATCATCCATGCACTAGTTAATGGGAATA
CATAATTCCATAATAACAGTTTCAAGTGAAATTGGTCTTTAAAATGGTAGTTCTTTGGTGGGAACC---TGCCATGGTCT
GAATGTT-TGTGTGCCACCAA-------AATTGATGTGCTGAAG----TCCTAAAGTCCAATGTAATGGTGTTGGGA-GA
TGGGGCCTTTGAGAGATGATTAAGTCATGAGGGTGGAGC-CTCATTAATGGGG-TTAGTGCTCTTAT-AAAAGAGACCCT
GA-AGAGCTCCCTTCCACTTTCCTCTGTGTGAGGACTCAGCAAGT----AGA----GTCTATGAACCAGGAA----GCCC
TCACCAAACAACAAATCTGCTGCA--CATGATTGTGGGTTTT-CAGGTTCTAG--------------ATTTGTAAGAAAT
-AAACATTTGGTGTTGATAAGTGACCCAG----TGCTATTTTGTTATAACAACCCAAATGGACTAAGACA---GAACATG
AATGCTATAAAATGTGGCACAAACTAGAGGA-TAACTGTGCAAAGTACAAAATGGAGCTTTACTGCCTCTACCCCGGTTA
ATTGGAATATA-TA-------------------------------ATTCCATA-ATAAAAACTGAAAATCAAATTGGTCA
TTAGAATGGTAGTGCTGC---AGTGGGAACT---CAACCACTATAAAACTAAAGCATAG--TTCTCCTCTATCTGGAAAA
GTTGTC
>Felis_catus
GCTCAC-ACTCTAAAGCCTGCACTGTGGGCAGTGCCATTGCTGTCACACCTGCTGCAACCAGCTGGCAAAACTGAAGCGT
GTCCC-CTGGCTGAGCAAAGTCAGCCCAATG-CCTCGGACATCTGCAAGC--TAC--------CAAGGCATTGCTATATC
TTAAGGTGGA--CTTTGCTAATGAAGCT-ACATTTTCTCTTAA-TCGT------AACAGT-ATATGCCAAAC-CAACTCT
CCTAA----CGCAAGGTTAAAATAGAGT-AAGAACCTTAGTGAGTCACA-CCAGGGCATGAAGCAACAGCACC-ACCATC
ATTGT--GTGCCCCATTCTGGTGGACATTTCTGCCT-AAGGAGCTCTAAGC---ATACATTAACACTCTAAAATCTGGCA
CAA---ACTCAAGGATTCA-CTGCTCGGGGTACAA---AATGGAGCTTTACT---GCCTCTTTGCTGGTTAATTGGAATA
TATAATTCCATAATAACAATTCCAAGTCAAATTGGTTTTTAAAATGGGAGTTCGTTGGTGGGAACC---TGCCATCGTCT
GGACGTT-TGTGCCCCACCAA-------AATTCATATGTTAAAG----TCCTAATGTCCAATGTGATGGTATTGAGA-GA
TAAGGCCTTAGAGAGGTGAGCAGGTCATGAGGGTGGGGC-CCCATCAATGGGA-TTAGT--TCTTAT-AAAAGAGACCCC
AC-AGAGCTCCCTTGCCCTTTCCTCTCTGTGAGGACATAGAAAGA----AGG---------TGCACCAGGAA----GCCC
TCACTGATCAGCAAATCTGCTATA--CGTAATCCTGGATTTTCCAGGTTCTAG--------------ATTTGCAAGAAAT
-AAATGCTTGC-----ATAAGCGACACAC----TGCTATTTT-----AACAACCCAAATGGACTAAGACA---GAACATG
AACCCTATAAAATGTGCCACAAACTCAAGGATTCACTGTGCAAGGTACAA-ATGGAGCTTTACTGCCTATGCACTGGTTA
ACTGGAGTATA-TA-------------------------------ATTCCATA-ATAAACATTCCACACAGGGTTGNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNN
>Manis_pentadactyla
GCTCGCAACTCTGAAGCACGCACTGTAGGCCACGCCCTTACTGTGACACCTGCTGCAACCAGCTGGCAAAACGGAAGTGT
GTGCC-CTGACTGGGTGGCATTGGCACAGAG-CCAGGGACATCTGCAAG---GAC--------CAAGGCACTGCCCTTCC
TTAAGGCAGG---TTTGTGAGGGGAGCT-ATATTTTCTCTCAG-TCAT------AACAGT-ATCTGCCAAACACAG-TCT
CATAA----AGCAGTGTTTCAACAAAGT--AGAGCCTTCATGAGTCACATTCAGGCCATGAGGCAGTAGGACT-AC---A
GTCCT--GTGCATCATTCCAGGGGATATTTCTGCCT-AAAGAGCTCTAAGC----TACACTAACACTAAAAAATCTGGCA
CAA---ACTCAAGGGTTCA-CTGTGAAGAGTACAA---AACAGAGCTTTACT---GCCTGTGTGCTGGTTAATTGGAATA
TATAATTCAGTAATGAAAATTCTAAATCAAATTGGTCTTCAGAATGGCAGTAGTTCATTGGGAATT---TGCTATGGTTT
GAATGAT-CGAGCCCCACAA--------AAT-----------------TCCCATTGCCCACTGTGATGGTACTGGGAGGG
TGGGGCCTTTGGGAGGGGCTGAGGTCATGAGGACAGAGCCCTCAGGAATGGGC-TTTGTA---TTAT-AAAAGAGACC-C
AC-ACACATCCCTAGCCCCTTACACCATGTGAGGACACAGCAAAA----AGGCACAGTCTATAAACCAGGAA----GCCA
TCGCCAAACAGCAGATCTGCCACCACCACGATCCTGGACTTTCCAGGCTCTGG---------------ATTGTGAGCAAT
-ACACGTTTGTTGTTTATAAGCCACCCAGTCCATGGTGTCTTGTTGTAACAGCCCAAATAGACTAAGACA---GAACATG
AACACTATAAAATCTGGCCCAAACTCAAGAATTCACTATGCAGGGTACAAAATGGAGCTTTACTGCCTATGCACTGGTTA
ATTGGAATATA-TA-------------------------------ATTCTATA-ATAAAAACTCTAAATCAAATTGGCCT
TCAGAATGGTGGTTCTTC---AGTGGGAACC---CAACCACTGTGAAACTAAAGCAGAG--CTCTC---TACCTG--AAA
ATAGTA
>Sus_scrofa
GCTTGC-ACTCTAAAGCATGCAGTGTTGGCAATGCCACTTCTATTACACCTGCTGCAACCAGCTGACAAAACTGAAGTGT
GTCCC-CTGACTGGGC-AAGTCAACCCAATG-CCTGGAACATCTGCAAGC--TAC--------CAAGGCACTGATATTTC
TTAAGGAAGA--TTTTGCTAATGGGGCT-ACATTTTCTCTTAA-TCAT------GGCAGT-AAATGCCAAACACAACTCT
CCTAA----AGCAGTGTTAAAATAGAGT-AAGTGCCTTAATGAGTCACA-TCAGGCCAGGAAGCAACAGCACT-AC---C
ATCTC--GTGCATCATTCTGGTGGACATGTCTGCCT-AAGGAGCTCTAAGC---ACACATTAAGACTATAAAATCTGGCA
CCA---ACTCAAGGATTCA-CTGCGCAGGGTACAA---AACAGAACTCTATG---GCCTCTGTGCTGGTTAACTAGAACA
CATAATTCCATAATAAA-ATTCCAAGTCAAATTGGTCTTTAGAATGGCGATTCTTCAGTGTGAACC---TGCAATGGCCT
GAATGTTGTGCCCTTCCCCCA-------AACTCATGTGTTGAAA----TCCTAATGGGCAATATGGTAGTATTGGGA-GG
TGAGGCCTTTGGGAGATGCTTAG-----------------CTCATGCATGGGA-CTAGTGTCCTTAC-AAAAGAGACC-C
CC-AGATCTCCCTGGCCC-TTCTACCATGTCAGGAAACAGACAGA----AGGCACCATCTATGAACCAGGAA----GCTC
TCACCAAACACCAGATCTGCTGATGTCATGATCCCGAACACCCCAATCTCCAG--------------AACAATGGGAAAT
-AAATGTTTACTGTTTATAAGCTACCAAGTCTGTGCTATTTTATTGTAACAG-CTAAGCAGAGCAAGA-------ACATT
AACACTGTAAAATCTGGCACCA--------GTTCACTGTGCAGGCTACAAAATAGAACTTTCCTGCCTATGCACTGGTAA
ATTGGAATATA-TAATAATATATTATAGATAGATAAATAGATAATATTCTACA-ATAAAAATTCCAAGTCACATTGGTCT
TTAGACTA----------------------T---GAACCACCACAAAACTAAAGCACAG--CTCTCCTTTATCTAGAAAA
CTGGTC
>Tursiops_truncatus
--------------------------------------------------------------------------------
--------------------------------CCTTGAAGGTCTGTAAGC--TAC--------CAAGGCACCGACAATTA
ATAAGGTAGA--TTTTGCTAATGGAGGT-ACATTTCTTATTAATTCAT------GGCAGT-ATATTCCAAGCACAGCTCT
CATAA----AGCAGTGTGAAGATAGAGTAAAAAGCCTAGATGAGTCACA-TCAGTCCACGAGGCAACAGCACCGAC---T
GTCCT--GTGCATCACTCTGGCGGACATTTCTGCGTAAAGGAGCTCTAAGC---ACAGATTAATACTATAAAATCTGGCA
CCA---GCTTAAGGATTCAGCTGTGCAGGGTACAA---AATGGAGCTTTACT---GCCTATGTGTTGATTAACTGGGATA
TATAATTCCATAATAAA-ATTCCAAGTCAAGTTGGTCTTTAGAATGGCGATTCTTCAGTGGAAACC---TGCTACGGCCC
GAAAGTT-GTTTCCCCCCAAA-------AATTCATACGTTGAAA----TCCTAATGCCCAGTGTGATGGTATCGGGA-GG
TAGGACCTTTGGGTGGTGCTTAGGTCATGAGGG--GAGCCCCTCTGAATGGGATTTAGTGCCCTTAT-AAAAGAGACCCC
AC-AGAGCTCCCTAGCCCCTTCCACCATGTTAGGGACCAGAGAGA----AGGGACCATCTATGAACCAGGAA----GCCC
TCGCTAAACACCAAGACTGCTGATGCCACGATCCTGGACTTCCCAACCTCCAG--------------AACTGTGAGAAAT
-AAACGTTCATTGTTTATAAGCGACCCAGACGATGTTATTTTATTACAACAGCCCGAGCAGACTAAGACA---GAACATT
AACGCTATAAAATCTGGCACCAACTCAAGGATTCACTGTGCAGGGTACAAAATATCACTTTACTGCCTATGCACTGGTTA
ATTGGAATATA-TA-------------------------------ATTCCATA-ATAAAAATTCCAAGTCAAATTGTTCT
TTAGAATGTTAGTTCTTC------------C---TAACCACTATGAAATTAAAGACTTG--CTCTCCTTTATCTGGAAAA
GTGGTC
>Equus_caballus
-----------------------------------CATTGCTGTCACAACTCCTGCAACCAGCTGGGGAAACTGAAGTGT
GTCCA-CTGATGGGGCAAAGTCAACCCAATG-CCTTGGACATCTCCAAGC--TAC--------CGAGACATTGCAATTTT
TTAAGGTAGA--TTTTGCTAAAGGAGCT-ACATTTTCTCTTAA-TTCT------AACAGT-ATATGCCAAACATAACTCT
CCTAA----AGCGGTGTTAAAATAGAGT-GAAAGCCTTAATGAGTCACA-CAAGGCCATGAGACAGCAGCACT-AC---C
ATCTT--GTGCCTCATTCTGGTGGACATTTCTGCCT-AAGGAGCTCTAAGC---ATACATTAACACTACAAAATCTGGCA
CAA---ACTCAAGGACTCA-CTGTGATGGGTACAA---AATGGAGCTCGACT---GCCTGTGTGCTTGTTAATTTGAATA
CATAATTTCATAATGACTATTCTAAATCAAATTGGTCTTTGGAATGGCAATTCTTCAGTGGGAACC---TGCTACGGCAT
GAATGTT-TGAGTCCCTCCAA-------AATTCATGTGTTGACATCCTTCCTAATGCTGAAAGCGACGGCATTGGGA-GG
TGGGGCCTTTAGGAGGTGCTTTGGTCATGAGGGTAGAGCCCTCATGAATGGGA-TTAGTGCTCTTGTAAAAAGAGGCCTC
CGCAGAGTTCCCTAGCACCTTCCACCATGTGAGGACACAGTGAGACTATGAACCACATCGATGAACCAGGAG----GCCC
TCACCAAACACCCAATCTGCCAATGCTGTGATCCTGGACTTTCCAACCTCCAG--------------AACTCTTAGAAAT
-AAATGTTTGCTGTTTATAAGATACCCAGTGTGTGC-ATTTTGTTATAACGGACTGAAAAGACTAAGACA---GAACATT
AACACTATAAAATCTGGCAAAAACTCACAAATTTACTCTGTAGGGAAAAAAATAGAGCGTTATTGCTAATACACTGTTTA
ATTGGAATATA-TA-------------------------------ATTCTATA-ATAAGAATTCCAAGTCAAATTGGTCT
T-ATAATAGTGGTTCTTC---ACTGGGAACT---TAGCCACTATGAAACTAAAGCATAG--CTCTCCTTTATCTGGAAAA
ATGTTC
>Ceratotherium_simum
--------------------------------------------------------------------------------
------------------------------------------------------------------GGCACTACAATTTC
TTACGTTAGA--TTTTGCTAATGGAGCT-ACATTTTCTCTTCA-TCAT------AACTAT-ATATGCCAAACACAACTCT
CCTAA----AGCAACGTTAAAATAGAGT-GAAAGCCTTAATGAGTCACA-TCAGGCCACGAGACAACAGCACT-AT---C
ATCTT--GTGTGTCATTCTAGTGGACATTTCTGCCT-AAGGAGCTCTAAGC---ATACATTAACACTATAAAATCTGGCA
CAA---ACTCAAGGATTCA-CTGTGAAGGGTACAA---AATGGAGCTTTACT---GCCTATGTGCTGGTTAACTGGAACA
TATAATTTCATAATAAAAATTCCAAATCAAATTGATCTTTAGAATGGCAGTCCTTCAGTGGGAACC---TGCTATGGCCT
GAATGTT-TGTGTTCCCCCAA-------AATGCATATGTTGACA----TCCTAATGCCCAATGTGATGGCACTGGGA-GG
TGGGGCCTTTGGGAGGTGATTTGGTCGTGAGGGTAGAGCCCTCATGGATGGGA-TTAGTGTTCTTAT-AAAAGAGGCCCC
AG-AGAACTCCCTAGCCCGTTCCACCATGTGAGCACACAGTGAGA----AGGCACCATCTATGAATCAGAAA----GCCC
TCGCCAAACACTGAATTTGCCAATGTTGTGATCTTGGACTTTCCAACCTCCAG--------------AACTGTTAGAAAT
AAAATGTTTGTTATTTATAAGCTAGCGAGTCTGGCCTATTTTGTTATAACAGACTGAACAGACTAAGACA---GAACATT
AACACTATAAAATCTGGCACAAACTCATAAATTTACTACGCAGGATACAAAATAGAGCTTTACTGCCTATGCACTGGTTA
ATTGGAATATATTA-------------------------------ACTCCATA-ATAAAAATTCCAAGTCAAATTGACCT
TTAGAATAGTGGTTCTTC---AGTGGGAACC---CAACCACTATGAAACTAAAGCATAG--CTCTCCTTTATCTGGAAAA
GTGGTC
>Condylura_cristata
-----C-AC-CAAAAGCATGCACTGCAGGCAATGCCAGGGCTGTTACACCTGCTGCAACCAGCTGGCAAAACCGAAGGGT
ATCTC-CTGACTGGG--AAGTCAACCCAGTG-CCTCAGACATCCACAGGCTATAC--------AAAGATGCAGCTATTTC
TGAAGGTAGATTTTTTGCTAATGGAG-T-ACATTTTCTCTTAC-TTGT------CACAAT-ATATGCCAAACACAACTCT
CTTGA----AACTG-GAAAAAATAGAGT-AAATGCCTTAATGAGTCACA-TCAGGTGATGA-----CAGCACT-AC---C
ATCTC--ATTCCTCATTCTGATGGACAGTTCTGCCT-CAGGAGCTCTATGC---ATGCATTAACACTAGAAAATCTGGCA
CAA---ACTCAAGGAATCA-CTGTGAAGGGTACAA---AACAGAGCTTTATA----------TGCTGGTTAATTGGAATA
TACCACTCCATAATAAGAATTCAGAGTCTAATTTGCTCTCAGG----------------GAGAACC---TGTTAAAGTAT
GGATGTC-TCTGTCCTCTCCCCATCCCCCATTCATGCGTTAAAA----TCCTAACACCCCATGTGAACACATGTGGA-GA
CAGGGCCTTGGGGAGGTGCTTAGGTCATAGGGTTGAAGCTGTTAAGAATGGGG-CTGGTATCCTCAT-GAAAGAATCCCC
C--AGAATTCCCTAGTCCCCTCCACTGTCTCAGGACACATGGAGA----AGATGCTGTCAATGAACCAAGA-----GTCT
TCACCAAA---------TGCTACTGCCAAGA-CCCAAACTTGCCAGCTCCAGG--------------AACTTTGAGAAGT
-AAATATTGGCTCCTTGTAAGCTACCCAATCGGTGCTGTTTTGTTATCAGAGTCCAAATGGACTGAGAGA---AGACATG
CACAGCATAAAATCTGGCAATAATGCAAGGATTCAC-GTGAAGGGTACAAAATACAGCTTTATTACCTGCACACTATTTA
ACTGCAATATA-GA-------------------------------ATTCCATA-ATAAAAACTCCCAGTTAAATTGGTCT
TTAGAATAGTGGTTCTCC---AGTGGGAGCC---CAACCTCTATGAAATGGAAACATAG--CTCTCTCTCACT--AAAGA
GTGGTC
>Sorex_araneus
GATCTC-GCTCCCAATCATGCGCTGTAGGCAAAGCCAGTGTTGTTACACCTGCTGCAA-CAGCTGGCAAAACTAAAGCAT
GTCCCGGTGACTGGACAGAGTCAACCTAACG-CCTTAAATATCTGCAA----CACCCCCCCCTCAAGGCATGGCTCTTTC
T-ATGGAAGA--TTTTGCTAATGAGTCTCATTTTTTCTCTTCA-TCGTCTCTTAAGGAAC-ATATTCCAAA--TGACTTT
GCTAA----AGTCATATTAAAACAGAGT-CAGAGCTTTAAAGAATCACA-TCCAGGCATGCGGTAGCTGCATT------T
GTCTCCGGTACATCATTCTGGTGGACACTTCCGCCT-AAGGAGCGCTAAAC---ACACATTCACACTGTGAAACTTGCCA
CCACACGCGTACAGACTCA-CCATGAAGGAGACCACCCAAGGAAGCTTTACT---GCCAATGTGCTAATTAAGAGGAATA
TATTGTTCCAT-ACAAAAATTTTAATACTAATTGGTCTTTTTA--TGCAGCTCTTCTGAGGGAAAC---TACCATGATCT
AACTGTT-TTTGCTTACTGACTC-----AGCTGATATACTAGAA----TCCTAAGGTCCAGTGTGATGGCATTAGGA---
-----CTTTGGAGA---GCTCAGGTCTGGAGCACAGAATTCTCATTAACAGA--TTAGTGTTCTTAT-AAAAGAGACCCC
AGTGGA-------TGCCCCTCCCACC-TGAGAAGACACTTTGAGA----AAGCACTGTTTACGATCCCTGCA----GCCT
----CGATGAACAAATCTGCCAGAGCTATCATTCTAGACTTCTCAGCCCCCAGACGAGATAAAAAAAAAAAATGAAAAAC
CAAATGTATCTTGTTTATAATCTAGCCAATCTGTGTTATTTTGTTCAAACAGCCCAAACAGATTGAGG-----GGACATG
AACATTACAAAACCTGGCATAAACTCAAGAATTTGTTCTG--AGATGCAA--------TTTACTGACTACACTCTGGTTG
ATTGGGATATA-TA-------------------------------ATTTCATAGAAAAAAATTCCATCTCAAATTGATCT
TTAGAATGGTGGTTCTTTTAGTACAAGAAGC---CATATACTGGGAAACTAAGGTACAG--CTCTCCTCTAGCTG-----
-TGGTG
>Myotis_myotis
ACCCCT-GCTGTAAAGCATGCACTGTAGGCAATGTCATTACTGTCACACCTGCTGCAACCAGCTGGAAAAACTGAGG-GT
GTCCC-CTGACCAGGCAAAATCAACCCGACA-CCTTGAACATCTGAAAGC--TAC--------CAAGACATAGCCATTTC
TTCAGGTAGG--TTTTTCCAGTGGAGCT-ACATCTACTCCCAA-TGCT------AACAGG-AGCTGCCAAGCCTGACTCT
CCTAAAGACAGCAGTGTAAAAGGGAAGT-CAGAGCCTTAACGAGTCACA-TCCAGCCACAAGACAATAGAACT-GC---C
ATCTT--GTGCCTCATTCTGGTGGGCATTTCTGCCT-AAGG-------AGC---AC----------TCTAAAATCAGACA
CAA---ACTCAAGGATTCC-CTGTGCGGGGTACAC---AGTGGAGCTTTACT---GCCTGTGCACTGGTTAACTGGAATG
TATCATTCCATAATAA------------AGACTGGACTTTAGAATGATGGTTCTTCAGTGGGAACC--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------CAGCCATGCTGATACTAAAGCAAGG---------------------
-TGGCC
>Rousettus_aegyptiacus
GCTCTC-ACTCTAAAACATGCACTGTCGGCAATGTCATTGTGGTTACACCTGCTGCAATCAGCTGGCAAAACCAAAGTGT
GTTCC-CTGACCAGGCAAAGTCAACCCAATG-CTTCAGACATCTGCAAGC--TAC--------CAAGTCATTGCTATTTA
TTCAGGTAGA--TTTTGCCAATGGAGCT-ACCTTTTCACACAG-TCAT------AACAGTAATATGGACCACGCAACTCT
CCTAA----AGCAGTGTTAAAATAGAGT-AAGAGCCTTAGTGAGTCGCA-TGAGGCCATGAGGCAACAGCACT-AT---C
GTCTC--GTGCATCATTCTGGTGTACAGTTCTGCCT-AAGGAGCTCTAAGT---GTACATTAACCCTATAAAATCTGGCA
AAA---ACTCAAGGATTCA-CTGTGTAGGGTACAA---AATGGACCTTTACT---GCCAACATCCTGGTTAATTGGAATA
TATAGTTCTATAATAAAAATTTCAAGTAAAATTGGTCTTCAGAATGGTGGTTCTGCAGTGGGAACC--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------CAACCACCATGACACTGAAGCATAGGTCTCTCCTTTATCTGGAAAA
CTGATC
>Homo_sapiens
GCTTGC-ACTCCAAAGCATGCACTGTGGGTAATGCCATTACTGGTACACCTGCTCCAACCAGCTGGCAAAACTGAAGTGT
GTCTT-TTGACTCAGCAAAGTCAACCCAATGCCCCCAGACAGCTGAAAGC--TAC--------CAAAACATTGATATTTG
TGAAGGAAGA--TTTTGCTAATGGATCT-ACATTTTCTCATAA-TCAT------AATAGC-ATATTTCAAACACGACTCT
CCCAT----AGCAGTGC-----TAGAAT-AAGAGTCTTAACGAGTCACA-TCAGGCCATGAGGCAACAGCACT-AC---T
GTCTT--GGGTATCATTCTGGTGCACATTTCTGCCT-AAGGAGCTCTGAGC---ATACATTAACACTATAAAATCTGGCA
CAG---ACTCAAAGATTCA-CTGTGAAGGGTACAA---AATGGAGCTTTACT---GTCTATGGGCCGATTAAGTGGAATA
TATAATTCCATAATAAAAATGCCAAGTCAAATTGGTCTTCGGAATGGCAATTCTTTTGTGGAAACC--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------CAACTGTTATGAAACTAAAGTACAG--CTCTCCTCTCTCTGAAGAA
GGGGTC



Dog79_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--CAGAGAGTAGAATGGTGGTTGCCAGGGGCTGGGG----GGTGGGGGAAATGGGGAGATGTTGGTCAAAGGGTACAAAG
TTTCAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGTACAGCATGGTGACTATAGTTAAT----------------
----AATACTGTATTGTATACTTGAAATTTGCTAA--------------GAGAGTAGATCTTAAGTGTTCTCACCACAC-
-ACAAAAAAATGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTA
TATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAA-------------
---------------------------------------------------------
>Canis_familiaris
TTT-------TTCTAATATCATAAAGCAACA---GGTACCTAT-------GGGAGGTTTT----AGTATTTATTTCCTA-
--TAGAGAACAGACTGGTGGTTACAAGAAGCAGGCATGGGAGCAGTCGAAATGGGTAAA-GGGAGTCAAAAGATACAAGC
TTCCAGTGCT--AAAATAAATACATCATGGAGATGTA-----CAGCATGATGACTATAGTTGTT----------------
----ACTACTGTACTGCCTATTTGAAGATTGGTAA--------------GAAAGAAAATCTTAAAAGTTCTCATCTCAAG
-GAAAAAAATT-------GTATGTGGTGACAG--ATGTTAATTTGACTTATTGTGGTGATCATTTGTTAATATATACAAA
TAGTGAATCATTATATTGTACATCTGAAGCTAATGTAA-TATTGTATGTCAATTATATGTCGATAAAAA---CAAATT-T
ACTTCTTA---ACTTTTATCCTGTTTGCAGTTTTAACT-AGCATATGCTATATTTGT
>Felis_catus
TTTTTGGATATGAGCACTCCATAAAGCAACAATGCATACATAT-------GGGAGGTTTT----AGTATTGATTTTCTA-
--CAGAGAACTGACTGGTGGTTACCAGAGGCAGGGGTGGGAGCGGGCAAAATGGGTGAA-GGGGGCCAAAAGGCACAAAC
TTCCAGTTAT--AAAATAAATACATCATGGGGATGTAATGTGCAGTGCGATGACCATAGTCGTT----------------
----AATACCGTACTGCATATTTGAAAGTTGCTAA--------------GAGAGTACATCTTACAAGTTCTCATGACACG
-AAAAAAAATTTGTAACCATATAGGGTGACAG--ATGTTAACCAGACTTATTGTAGTGATTGTTTCTCACTATGTACAAA
TAACGAATCATGCTATTGTACACCTGAAACTAATATAA-TGTTGTATGTCAACTTTATCTCCATAAAAA---CAAATT-T
ACTTCCTA---ACTTCTGTACTATTTGCAGTTTTAATG-AGCATTCACTATTTTTGT
>Manis_javanica
TTTTGGGATATTAAAACATCATAAGGCAATATAGACTATATAT-------GGGGAATTTT----AATATATATTTCCTA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------ACTTCTATCCTGTTTACAATCTTAATT-AGTATACACCTT--TTGT
>Sus_scrofa
CTTCTGGATATTAGAGCATC-TAAAGCAATACAGAGTATATACAT-----GGAAGGTTTT----AATTTTTACTTCCTA-
--TAGAGCACAGATTTATGGTTGCCAGAGGTAGAGG-----GTGGGTGAAATGGGTGAA-GGAAG-----------AAAC
TTCAACTAA---AAACTAAACAAGTCTTGGGAATATAATGTACAGCATGGCAACTATAGTTAATCACACCGTATTGTC--
-AAAAACACCATAATGCATATTTAAAAGGTCCCAATAAATCTTAAAGGTTAGAATAGATCTTAGAAGTTCTCATCACAAG
AAAAAAAAAATTGTAGCCATATCAGGTGACAG--ACGTTAACTAGACTTATTGTG---ATCATTTCTCAAAATACACAAA
CATGGAATCAT---GTTGTATACCTGAAAC-----TAA-TGTTACACGTCAATTACACCTCAATAAAAA---AAAATTGT
ATTTCCTA---ACTTCCATCCTGTTTGCAATTTTAACTAAGTATATGCTATTATAAT
>Bos_taurus
TTTTTGGATATTAGACCATCATAAAGCTGTATAGGGTATATACAA-----GGGAGGTTTG----AACATGTATTTTCTA-
--CAGAGAACCGGTTGCAGGTTACCAGAGGTGAGAG-----GTGGGCAGAATGAGTGAA-GGGGGTCGAAAGGTACAAAC
TTCCAGTTA-------TAAACAAGTCATGGGGGTGTAATGTACAGCATGGCAGCTATAGTTAATAATAGTGCATTGTCTA
AAAAAATACTGTATTGCATATTTAAAAGGTGCTAA--------------GAGAATAAAATTTAAAAGTACTCATCACAAG
-AAACATTTTTTGTAGCTATGTGTGGTGACAG--ATGTTAACTAGAATTATTGTG---ACCATTTCTCAGTATATACAAA
TATGGGATCGT---GTGGTACACCTGAAACCAATATAA-TGTTGCCTGTCAACTGCACCTCAATTAA-----AAAACTTT
ATTTCCTA---ACTTCCATCCTGTTTGCAGTTTTAACTAGGTGTATGTTATTTATGT
>Equus_caballus
ATTTTGGATTTTAGAATATGATAAAGCAACACAGAGTATATAT-------GGGAGGTTTT----CATATTTATTTCCTA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------ACTTCCATCCTGTTTGCAGTTTTAACC-AGCATATGCTATTTTTGT
>Ceratotherium_simum
ACTTTGGATATGAGAAT-TGATAAAGCAACATAGAGTATATAC-------GGGAGGTTTT----AATACTTATTTCCTA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------ACTTCCATCCTGTTTGCAGTTTTAGCT-AGCATATGCTATTTTTGT
>Myotis_myotis
TTGGAGAATATTAAAACATCGTAAAGCAATGTGG------------------------TT----TATATTTATTTCCTA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------ACTTCCATTCTGTTTGCAAT-TTAACT-AGCATATGCTATTTTTCT
>Rousettus_aegyptiacus
TTTTTGAATATTAAAACATCATAAAATGATATCAAGTATATGTGTGTGGGGGGGGGGGGT----GATATTTATTTCCTA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------ACTTCCATCCTGTTTGGAATTTTAACT-AGCATATACTGTTTTTGT
>Condylura_cristata
TTT---GGTAGTCGAAGATCATAAAGCAACACAGTGCCCACAG-------GGGAGGCATC----AATGTCTATTCCCTA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------ACATTAATCCTGTTTGTAGTTTTAACT-AGCGTATGATATTTTTCT
>Erinaceus_europaeus
TCCTACACTGCTAGACTATCATAAA-CAACATGGAGTCTACAT-------GGGAGGCTTTA---AATATTTACTCCCTG-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------ACATTCATCCTGTTTGCAATTTTAACT-AGTATATGTGATGTATTT
>Heterocephalus_glaber
CTTTTGGATATTGAAATATAATAAAGAAATACAGA-------------------GGCT------AACA-----TTCCTA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------ACTTCCATCCTATTTGCAGTTTTAACC-AGCATTTGCTATTTTTAT



Dog80_LINE

>L1MA9_
----------------------------------------------------------------------TAAAAAAGAA
GGAAATCCTGCCAT---TTGTGACAACATGGATGAACCTGGAGGACATTATGCTAAGTGAAATAAGCCAGGCACAGAAAG
ACAAATACTGCATGATCTC-ACTTATATGTGGAATCTAAAAAAGTCAAAC---------TCATAGAAGCAGAGAGTAGAA
TGGTGGTTGCCAGGGGC------TGGGGG-GTGGGGGAAATGGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATG
CAGGATGAATAAG-------------------------------------------------------------------
--------------------------------TTCTGGAGATC---TAATGTACAGCATGGTGACTATAGTTAATAATAC
TGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCACCACACAC---AAAAAAATGGTAACTATGT
GAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACA
CCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAAT----AAA-------------------------------
-------------------------------------------------------------
>Canis_familiaris
CATTCAGG--ATATGCATTTTTGTGTGAGGCTTATGATCACACATCTGTAATT---AAAAATTAAAAGAATAAAC----A
AGAAATTTTGCTGT---TTACGACAACATAGATGGACTTTGAGGGCAT-ATGCTACGTGAAATAATTCAGACAGAGAAAG
GCAAATACTGTATCATCTT-ACTTATATGTGAAATCTAAAACAAACAAAT---------TCATAGATACAGAGAACA-CT
TGGTGGTTGCCAGAGGTGGGATTTGGGGA-GGGGGTGA----GGCGGAGGGAGC-GAGAAGGAACAAACTTTCAGTTAT-
-AAAGTAACTAAG-------------------------------------------------------------------
--------------------------------TCATAGGGATGTAATAATGTACAACATGGAGATGATGGTTAATATGAT
TTTCCTACATGTATGAGAGTTGGTAAGAGAGCAAATCTTAAAAGTTCTCAACAGAGGTTAAAAAAAAATTGTGTGACTGT
ATGGTGATAC--ATGTTAACTAGGTGTATTGTGGTGATCATTTTGCAGCATATACAAATGTCAAATCATTATGTTGTACA
CATGAAACTAGCATAA-TGTTACATGTCGACGATACCTCAAT----AAAAAAAATAAACAGGATAGACTGGTTCTCCTTA
T---ACAGAATACTT-TGTCTCTCTTATTAAGGCAGCATATAAATGGTCATTATGAACACA
>Felis_catus
CATTCAGA--ACAAGCATTTTTGTGTAAGGTTTATAACCATATATGTATAATT---AAAAATTAAGAGAATAAACAAGAG
TGAAATCTTTCCAT---TTGTGACAACACGGATGGATGTTGAAGGCATTGTGCTAAGTGAAGT--------CAGAGGAAG
ACAGATACTGTATTATCTT-ACTTACATGTGAAATCTAAAACAAACAAAC-----AAGTTCATAGATACAGAGAATAGAC
TGGTGGTTGCCAGAGGTGGGGATTGGGGA-GTAGACCAAATAGGTGTAGGGAGCAAAAAAAGTGCAAACTTCCAGTTAT-
-AAAATAACTAAG-------------------------------------------------------------------
--------------------------------TCATAGGGGTG---TAATGTACAACATGGAGACTATAGTTAATAAGAC
TGTGCCGCATATCTGAAAGTTGGTAAGAGACTGAGTTTTAAAAGTTCTCATCACAAGTAAAAAAAATTCTGTGACTATGT
ATGCTGATGA--ATGTTAACTAGATGTATTGTGGTGACCATTTTGCAATATATACAAATGTTGAATCATTATGCTGTACC
CCCGAAACTAATATAA-TGTTATATGTCAATGAGACCTCAGT----AAAAAA--TAAACAAAATAGACTTGTTCTCCTTA
C---ACAGAATACTT-TATTTCTATTATTAAGTCAGCATATAAGTGGTGATTATGAACATA
>Manis_pentadactyla
CATTCAGA--AGATGCATTTTTGTATGAGTTTTATAATCATATACATGTAATA---AAAAATTAAAGGAATAAA-AAGAA
TGCTATCTTGCCAT---TTGGGACAACATGGATGGACCTTGAGGGCTTTATGCTAAATGAAAT---------AAACAAAG
ACAAACACTGTATGA-----TCTTATATGTGAAATCTAAAACAAACAAACAAACAAAGCTCACAGATACAAAGAGCAGAT
TGCTAGATGCCAGAGGGAAAGGGTGGGGA-GTGGTCGAAATGGGTAAAGGGAAT-CAAAAGGTGCAAACTTCCAGTTAC-
-TAAATAAATAAG-------------------------------------------------------------------
--------------------------------TCATGG-GATG---CAATATACAGCATGAAGACTATAGTGAATAATAA
CGTTTTGCATATTTGAAAGTTGCTAAG-GATTAAATTGTAAAAGTTCTCATCATAAGT-GAAAAAATGCTGTAACTATGT
ATGGTGATGG--ATGTTAAGTAGATTTATTGTGGTGATCATTTTGCAATATATACAAATATTCAATCAT--TGTTATATG
CCTGAAACTAATATAA-TGTT-TATGTCAATTATACATCAATT---AAAAAGGTGAATCAAAATAGACTTTTTTTTTCCA
A---ACAACATACTT-TGTCTCTCTTATCAAGTAACCATCTTAGTACTGATTTTGAACACA
>Sus_scrofa
CATTCAGA--ATAGGCATTTTTGTGAG-GGCTTATAATCACATACATGTAATT---AAAAATTAAAGGCAT--ACAAAAA
TGAAATCTTGTCAT---TTGCAATGACATGCGTGGACCTTGAGGGCACTATGGTAAGTGAAATAAGTCAGACAGAGAAAG
GAGAACACTTTATGAT-TTAACTTATATGTGGAATCTGAAACAAACAAACAGTCCAGGTTCATAGATACAGAAAAC----
-GGTAGTTCCTTGATGTGGGGTGTGGG---GTGGACAAAATGGGCAAAGGTAAT-CAAAATGTACAAACTTCCAATTAT-
-AAAATAAATG---------------------------------------------------------------------
--------------------------------TCACAAATATA---TAAAGGATAGCATGGTGACTATATTTAATACTAC
TGTATCAAATATCTGAAAGTTGCTAGGAGAATAAATCTTAAAACCTCTCATCACAAATCAAAAAAAAAGTCTAACTATGA
ATGGAGATAG--ATGTTCACTAGACTTATTATGGTGAGTATTTTGCAATA-ATACAAATATTGGATCATTATGTTTTATA
CTTGAAATTAATATAA-TGCTGTGTATCTATAATAC-----T----TCAATACAAAATTAAAGTAGACTCATTTTCTCTG
T---ACAAAATGCTT-TGTCTGTGTTATCAAGTCATTGTGTTGGTGGTGATCATGAACACA
>Bos_taurus
CATTCAGA--ATATGCATTTCTGTGAGAGGTTTATAATTACATACATGTAACT---AAAATTTACAAGAATGAA-AAGAA
TGAAATCTTGTCAT---TTGCAGTGACATGGATGGACCTTGAGGGTATTCTGCTAAGTGAAATAAGTCAGACAAGGAAAG
----ATACCATATGATCTCAACTTAAATGTGGAATCTAAAACAAACAAAAA----AATTTCATACATACAGTGAATA-GT
TGGAGGTTGCCTGAGGTGGGGTGTAGGCATGTAGACCAAATGGGTGGAGGTGAT-CAAAATGTACAAACTTCCAGTTAT-
-AAAGTAAATAAGTTCCCTGGTGGCTCAGATGGTAAAAAATCTGCCTGCAATGTTTGTGTGTGTTAGGCTGATTCTTTAC
CACTAGTGCCACCTAGGAAGCCACTTTCACTTTCATGAATATC---TATTGCAAAGCATGGCTACTATAATTAATAATAC
TGTATTGTATATGTGAAAGTTGCTAAGAGAGTAAATATTAAGACTTCTCATCACACACACAGAAGAATCAGTAACTGTGT
ATGATGACAG--ATGTTAACTAGACTTATTGTGGTGATCGTTTTGCAATATATACAAATACTGAATTATTATATTTTAAA
CCTGAAACTAATATAA-TGATATATGTCAATTATACCTCAAT----AAAA-ATTAAATTAAAATAGACTATTTCTCTCTA
T---ACAAAATATTT---AATCTGTTATCCAGTTATTGTGTTAGTGGTGATTGTGAATGTA
>Equus_caballus
TATTCAGA--ATGCACAGTTTTGTGTGAGGCTTATAATCATGTATGTGTAATT---AAAAATTAAA----TTCTAATAGA
CTTATTCTCTCTAT------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----ACAGAATACTT-----TTTGTTATCAAGTCGTCATATTAGCGGTAATTATGAACACA
>Ceratotherium_simum
CATTCAGA--ATATACATTTTTGTGTGAGGCTTATAATCACATACACATAATT---AAAAATTAAA----TTAAAATATA
CTTGTTCTCTCTAT------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----GCAAAATACTT-TGTCTCTGTTATCAAGTCACTATATTAGTGGTAATTATGAACATA
>Myotis_myotis
CATTCAGA--AAATGCATTTTTGTGTGAGGCTTATAATCACATACATATAATT---AAAAATTACA----TTAAAAAACA
CTGGCTCTTTCTAT------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----GCATAATATTT-TGTCTCTGTTACCAAG------TATATGTGGCAATTATGAACACA
>Pteropus_vampyrus
CATTCAGA--AAATGCATTTTTGTGTGAGGCTTATAATCACATATGTATAATT---AAAAATTAGA----TTAAAATAGA
CTGATTCTCTCTAT------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----ACAAAATATTTTTGTCTCTGTTATCAAGCCACTGTAAAAGTGGTGATTGTGAACACA
>Condylura_cristata
CTTTGAGAATATGG--AGTTTTGTGTGAGGCTTATACTCACATATACATAATT---AAAAATTAAA----TT-AAATAGA
CTGGTTCTCTCTAT------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----ACAAAATGTTT-------TGTTATCAAATCACTACATTAGTGGTGATTATGAACACA
>Sorex_araneus
TATTCAGAATATGTACATTTGTGTGTGAGGCTTATAATCACATGCATATAATT---AAAAATTAAG----TTAAAATAGA
CTAATTCTCTTAAT------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----GTGGAATTCAC-TGTCCTTTATAACAAGTCACTATATTAGCATTGATACTGAACACA
>Homo_sapiens
CATTCAGA--ATACACATTTT-GTGTGAGGCTTATAATTACATACATATAATT---TAAAATGAAA-----TGAAATAGA
CTGGTTCCCTCTAT------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----ACAAAGTCCTT-TGTCTCTGTTATCAAGTCACTGTATTAGTGGTGATTATGAACACA



Dog84_LINE

>L1_CARN7_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------ATATAGTCAATAATATTGTANTAACNTTGTATGGTGACAGATGGTAACTAGACTT-ATTGTGGTGATCACTT
CAC--------AATGTATACAAATGTCGAATCACTATGTTGTACACCTGAAACTAATATAACATTGTATGTCAATTATAC
TCAAATAAA-----------------------------------------------------------------------
----------
>Canis_familiaris
ATT--TGCAAG-AAATAGGCCACATATA----TCATAAGGGGACCCT---TTTC---AAAAAT-TAGAAACT-CA-----
-----------------------------------AATATTTGAAATTTGTTGAGAG--TCAACCTTAAAAAGTCCCCAC
CAC-----ATGAA---AAAAAAATTTTTGTAATTATGTATAGTGATGGATGTTAACTAGACTT-ACTGTGGTGATCATTT
TGC--------AATAAATACAAATATCAAATCACTGTGATATATGC-TGAAACTAATACAATGTCTTAAGTCAATTAAAC
CTCAATAAC------AAAT-TAGAAGCAATT----CAATCTTCCTTCATTCTCCATCAACTAGT----AATACCAAATCT
TCAGTGCTTA
>Felis_catus
ATT--CACAAG-AAATATTAAACATATAATA-TCATAATGGCACCCA---TTTC---AAAAAC-TAGAGACT-CT-----
-CAGCATGGTGATTATAGTTAAAAATACTGTATTGCATATTTGAAAGTTGGTAAGAG---AGA-CTT-AAAAGTCCTCAT
CAC-----ATGAA---AAATAAATTGT---AATTATGTATGGTGATGGATGTTAACTAGACTT-ATTGAGGTAATCATTT
TGC--------AGTATATGCAAATACCAAATCACTATGTTATATACCTGAAACTAATATAATGCCTTATGTGAATTATAC
GTCAATAACA---AAAAAT-TAGAAACAATT----CAATCTTGCTTCATTCCCAGTCAACTAGT----AAGATCAAATCT
TCAGTGCTTA
>Manis_javanica
ATT--CCCAGG-AAATAGTAAACATA-AACA-TCTCAAGGTCACCCA---TTTC---AAAAAT-TATAG----CT---GT
ACAG-ATGGTGACTATAGTTAATAATACTGTACTGCACATTTAAAAGTTGCTAAGAGAATAGATCTT-AAAAGTCTTCAT
CAC-------------AGAAAAATATTCTGTATTATGTATGGTGATGGATGTTAACTACACTT-ATTGTGGTGA-CATTT
TGC--------AACATATACACCTATCGAATTATTATGTTATACACTTGACACCAGTAAAACTTGTCAA-----------
-------------AAAAAA-TTGAAACAACT----CAATCTTCCTGCATTCCTGGACAACTAGTAATAAATATCACATCT
TCATTGTTTA
>Sus_scrofa
ATC--AACAAG-AAATAGTAAACATACA----TTACAAGGTCACCCA---TTTC---AAAAAT-TAGAAACA-AT---AA
ATAGCATGGTGACTAT--TTAATACTACAGTATTACAAATTTGGAAGTTGCTAAGAGACTAGATCTT-AAAAGTCCTTAC
CAT-----AAGAA---AAAACAATTTT--TAACCATGTATGATGATGAACATTAACTAGACTT-CATGTGTTGATCACTT
TGCTATATATATATATATATAAATACTGAATTATAATAATACATACCTAAAACTAATGTGTCTATTTACCT---------
---------------CAAT-AAAAAAAAATTA---CAATATTG-TTCTTTCCTGGCCAACTACT----AATAGCAAATCT
TCAATGCTTA
>Bos_taurus
CTT--CATAGG-AAATAGTAAACATATAATA-TCACAAGGTCACTCA---TTCC---CAAAAT-TAGAGAC---T---AT
ACAGCGTGGTAACTATAGTTAATAATACTGTATTGCAAGCTGGAAAGTTGCTAATAGAGTAGATCTT-AAAAGTTCTCAT
CACGAGAAATAGA---AAAAAAATTGTTTTAACTATGTATGGTGACAAATGTTAACTGGACTTAACTGTAGTGATCATTT
TGC-------------------------TATTATTATGTTGTACATGTGAAGCTAATATAATG---TATGCCAAATATAC
CTCAATAA-----AAAAAT-CAGAAACAACT----CAATCTTGCTTCATTCCTGTCCAATGAAT----AATATCAAATCT
TCAATGCTTA
>Equus_caballus
ATT--CACAGG-AAACAGTAAACATGTCACGTTCGCAAGGTCACCCA---TTTC---AAAGAT-GAGAAACA-CC-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------CAATCTTGCTTCACTCCTGGCCGACCAGC----AACAGCACACCT
TCAGTGCTTC
>Ceratotherium_simum
ATT--CACAGG-AAACAGTAAATATATAACATTCACAAGGTCACCCA---TTTC---AAAAAT-TAGAAACAACT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------CAATCTTGCTTCATTTGTGGCCAACTAGT----AATATCAGATCT
TCAAAGCTTC
>Myotis_myotis
ATT--CACAAGAAAATAGTAAACATATAACA-TCACAAGGTCACTCA---TTTC---AAAAAT-TTGAAATGACT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------TAATCTTGTTTTATTCCCATACAAGCAGT----AATATCAAACTC
TCAATGCTAA
>Rousettus_aegyptiacus
ACT--CACAGG-AAATTGTAAATGTATAACA-TCTCAAGGTCATTCA---TTTC---AAAAAT-TAGAAAAAACC-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------TAATCTTGCTTCATTCCCAGCCAAGAAGT----AACATCAAACCC
TCAATGCTTA
>Condylura_cristata
AAT--CTCAGG-AAACAGTAAACATAGTA---TCATAAGGTCAACTTTTTTTGC---AAAAAGAGAAAAATAACT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------TAATCTTGCTTCATTCTTGGTCAGCGAGT----AATATCAAACCT
TCCATGCTTA
>Erinaceus_europaeus
GCTAAAACAGT-AAACAGTAAATATAACA---ATACAAGGCAACCTG---TCTC---AAAAAT-TATAAACAACG-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------CAATCTTGATTTATTTCTGGTCTTGCAGA----AATATCAAAGCT
ACAGTGCCTA
>Homo_sapiens
ACT--CATAGG-AAATGGTAAACATATAATA-TCACCAAGTCTCCCT---TTTT---GAAAAT-TAGAAATAACT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------CAATCATGCTCCATTCCTGGTCAACCAAG----AATTTTAAATTT
ATAATGCTTG



Dog90_LINE

>L1MA9_3END
-----------------------------------------------------------------------------CAT
TTCACAATGTATA-CGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCA
ATAAAGCTGGAAAAA-----------------------------------------------------------------
--------------------------------------------------------------------------------
-------
>Canis_familiaris
TTCCAAATGGCATGATTTCCTAGCAGAG-AAACTTGCATGTCAGTTCTTGGGTAT---AAA-CTGTATTCCCAT------
-----AATATACATTGTAAATCAAAGCATCACACTGTA---CTTAAACTTACATAG-TGATGTAGGTCAATTATGTCTCA
ATTAAACTGGGAAAAATAAATAAGTAG--ATAACAAGGCATTAATAGACAGAGAGGCAAAAAAA----------------
---------AAAACTGTCTTCCAAT---TTCTCAGCTATGGAATGCAGAT-------AAAAATTAACTCAC-ATGGCCAC
TGCGAAG
>Ailuropoda_melanoleuca
TTCCAAATGGCATGACTTCCTAGCAGAG-AAACCTGCATTTAAGTTCTTGGGTAT---AAA-CTGTCTTCCCAC------
-----AATATACATTGTAAATCAAAGCATCACACTGCACACCTTAAACTTACACAG-TGATGTATCTCAGTTATTTTTCG
ATTGAACTGGAAAAAACAGATAAGTGG--ATAATAAGGCACTGATAG----AGAGGCAAAAAAAAAGAAAAAGAAAAGAA
AAAAAA---GAACCTGTCTTCCAAT---TCCTCAGCTATGAAATACAGAT-------AAAAATTAACTCAC-ATGGCCAC
TGCAAAG
>Manis_pentadactyla
TTCCGAATGACATGATTTTCTGGCAGAG-AAAATTGAATTCTAATTCTTGGGTAA---AAAGCTGTACTCCCAC------
-----AATATACATTGCAAATCAAGCCATCATGCTATGGGGCTTCGACTCATAGAG-TCAGGTATGTCGCTTATTTCTCA
GTAAAACAGGGAAA-------AAATAA--GTAGTAAAGCAATAATATAAGGAAAGGCAAAAAAAG---------------
---------AGATCTGTACCCCAAT---TCCTCAGCTATAAAATGGAGAT-------AAAAATTAACTCAC-GTGGCCAT
TGTGATA
>Sus_scrofa
TGCTCAATGATGTAATTTCCCAGCAGAGAAAAA--GAATTTCAATTCTTGGATAG---AAAGCTATATTCCTAC------
-----AAGACA---TGTAAATCAAATCATCATACTGTATGCCTTAAATTTAGACAG-TGATGT--GGCAATTATTTCTCA
GTAAAACTTGATCA-----ATAAATAA--AGACTAAGGCATTAATATCGAGAAAGGTAA---------------------
---------AAAATACTGTTTCAAT---TCCTCAGCTATAAAATGAAGAT--------AAAATCAACTCACAATCACCAT
TGCAAAG
>Bos_taurus
TTCCAAATGGCATGATTTCCTGGCAGAG-AAAAGTGCATTTCAAGTCTTGGGTAG---AATACGGTATTCCTAT------
-----AATACA---TGTAAATCAAATCATTGTGCTGTATGCCTGAAACTTACACAG-TGATGTATGTCAATTATTTCTTG
GTAAAGCTGGATAA-----ATAAATAAATATATTGAGGCATTAATACAGAAAAAGACAA---------------------
---------AAAAACACATTTCAAT---TCCTCAGCACTAAAATGGAGAT-------AAAAATAAGCTCATAATGGTCAT
TGTGAAG
>Equus_caballus
TTCCAAATGGCGTAATTTCCTGGCAGAGAAAAACCGCATTTCAATTCTTGGGTAT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------AAAACTGTATTCCAAT---TCCTCAGCTATACAATGGAGAT-------AAAAATTAACTCAC-ATGGCCAT
TGTGTGG
>Ceratotherium_simum
TTCCAAATGGCATAATTTCCTGGCAGAG-AAAACTGCATTTCAATTCTTGAGTAT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------AAAACTGCATTCCAAT---TCCTCAGCTATAAAACGGAGAT-------AAAAATTAACTCAC-ATGGCCAT
TGTCTAG
>Myotis_myotis
TTTTAAATG-TGTAATTTATTGGCAGGG-AAAATTGTATTTCCATTGTTGGGTAT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------AAAACTGTATGCCAAT---TTCTCAGCTATAAAAGGGAGGT-------GAAAAGTAATTTAC-ACGGCCAC
TGCGAAG
>Rousettus_aegyptiacus
TTCCA--------GATTTCCTGTCAGGG-GAAATTGCATTTCAATTCCTGGTCAT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------AAAACCATAACCCAAT---TAATCGGCTAAAAAACAGACAT-------AAAAATTAATTTAC-ATGGCCAC
CAGAAAG
>Condylura_cristata
TTTCAGATGACACAATTTCCTGGCAGG--AAAACTGCATT-----TCTTGGTTAT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------AAAACTGTATTCCAAT---CCGTCCGCTATGAAATGGAGAC-------AAAAATTCATTTCC-CTGGTGGT
TGT-TAG
>Sorex_araneus
TTTCAAATGGCATCACCATCCAAGTGGG-AAAACACTGTTTCAATTCGTAGATAC-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------AAATCAAT-TTCCAAT---TCTTTAGTTGTAAAATGAGGACCAAAAAAAAAAAAAAATGTCCCACGGCCAT
TGCAAAA
>Homo_sapiens
TTCCAAGTGGCATACTTTCCTGGCAAGA-AAAACTGCATTTTAATTCTTGGGTGT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------AAAACTATATTCCAAT---TCCTCAGCTATAAAATGGAAAT-------AAAAATTAATTAAC-ATGGTCAT
TGTGAAG



Dog92_LINE

>L1_CARN7_3END
-------------------------------------------------------------------------------A
GTTATAAAATAAATAAGTCATGGGGATGTAATGTACAGCATGG----NGAATATAGTCAATAATATTGT-----------
--------------------------------------------------------------------------------
------ANTAACNTTGTATGGTGACAGATG--------------------------------------------------
--GTAACTAGACTTATTGTGGTGATCACTTCACAATGTATACAAATGTCGAATCACTATGTTGTACACCTGAAACTAATA
TAACATTGTATGTCAATTAT------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------ACTCAA
ATAAAAAAA-----------------------------------------------------------------------
------------
>Canis_familiaris
CCAATACTCTCTTGGTCTC--CTTCATTCATCTGTGAAATGAAG--AGTATGATGGGG---A-AAAGGGAAGTGAG----
------------ACAAGTCATGGGGATAT--------------------------------------------CATATTT
GAAAGTTGCTAAGATAGTTGATCTTAAGAGTTCTCATCACAAATATATATATATATATATATGTTATATATAGTTTTATA
TATATATGTGAC--TGTATGGTGGCAGACAAATATATATATATATATATATGTATTTATATAAATAACTGTATGGTGGTT
GACTGTCTAGACGTTTTACTGTGATCATTTCGCAGTATCGACATGTGTTGAGTTATTATGCTGTACACCTCAAAGTAATA
TAATG-TATGTGTCAAGTAC------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------ACCTCA
ATTCT-------AAAAGAGGAAGTCAG---AATGG----CTGTTTTTGTGCAGAACCACTTACATGCTAT--GGTGCTTT
CAGGTTGAGTGG
>Felis_catus
CTAATCCTTCCTTTGTCTC-ACTTCATTCATCTGTAAAATGAGA--AGAATGATGGTA---AGAAGAGGAAGTGTG----
------------ATATTTC-TGGGGATATAATGCACAGCATGGTGACTGACTATAGTTAATAATACTGTGTTGCATATTT
AAAAGTTGCTGAGAGAGTAGATCTTAAAAGTTCTCATGAGAAAAAAACGT------------------------------
------TGTCAC--TGTATAGTGACAGACATAT-------------------------------------TATTATAAGT
GACTA--TATATTTATTATGTTGATCATTTTGCAATACATACAAATATTGAATCATTATATTGTATACCTGAAACTAATA
TAAC--CATATCTCAATTTTTTTAAGTTTATTTATTTATTTTGAGAGAGAGAGAGAGAGAAAAGTGTGAGTGGGGGAGGC
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAATCCCAAGCAGGCTCCATACTGTCAGCACAGACCCTGATGCTGGACTCCAT
CTCACAAACCATGAGATCATGACCTGAGCCGAAGTCAAGAGTCGGATGCTTAACCGACTGAGCCATCCAGGCGCTCCTCA
ATTTTAA-----ACAGAAGGAAGTGAG---AATGG----CCAGCGCTGTACAAAACCACCTGCATGCTGTACGGTGTTTT
CAGGTTCAACGG
>Sus_scrofa
CTCCTCCT-TCTTTGTCTC-ATTTCCTTCTTCTACAAAATGAGG--AGAGTGATGCTC---A-CAAATGAAGTGAG----
------------ACACGTCATAGGGATGTGATGTAGAGCATGA----TG---------------ACTGTACAGCATGTTT
GAAAGTTGCTAAAAGAGTAGAATTTGAGCGTTCTCATCATAAGAAAAAAT------------------------------
------TGTAACCATGTATGGTGAAAGATA--------------------------------------------------
--TTAGCTAGACCTGTTCTGGTGATCATACTGAATTACATGCAAATACTGAATTGTTATATCGTACAGCTGAAACTAATA
TCATGTTATATGTCAACAAT------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------ACCT-A
ATTTTAA-----AAAATGGGAAGTGAG---GATGG----CCAGTTTGGTGCAAAATCATTTGTGTGCTAT--GGTGCTTT
CAGGTTCTGTGG
>Bos_taurus
CCAATTCTCCTTTTGTCCC-ACTTACTTTATCTATAAAATGAAA------TGATGGTC---ACAAAGGAATATGGG----
------------ATAAGTCACGGAGATGTGTTGTACAGCAGGA----TGGCTATAATAAGTAATACTGTACAGTGTATTT
GAAAGTTGCTCAGAAAGTCTATCTTAA---TTCTCATCACAAGAAAAAAA------------------------------
------TATAACACTGTATAGTTATAGGTA--------------------------------------------------
--TTAGATAGACTTACTATGATGATCATTTTGCAATATATACAAATATTGAATTGT-------TACACCTAAAATTAATG
T-----TCTATGTCTATTTT------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------ACCTTA
ATTTTA------TAAAAGGGAGGTGAG---GATGG----CTAGTTTTGTGCAAAATCACTTGCATGCTTT--GGTTCTTT
CAGATTCAGTGG
>Equus_caballus
CTAAGCCTCTCTCTGTCTC-GCTTCTTTTACCTGTAAAATGAGAACAGAATGATGGTC----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------AAAAAGAGAAGTGGG---GATGG----CCAGTTATTTGCAAAACCACTTGCATGTCAT--GGAGTTTT
CAGGGTCAATAG
>Ceratotherium_simum
CTAAACCTCTCTCTGTCTC-ACTTCCTTCATGTGTAAAATGAGGACAGAATGATGATC----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------AAAAAGAGAAGCGAG---GATGG----CCAGTTATGTGCAAAACCACTTGCATGCTCT--GGTGCTTT
CAGCTTCCATAG
>Myotis_myotis
CTGATTCTGTCT--GTCTC-ACTTCCTTCATCTATAAAATGAGGACAGAATGATGGTC----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------AAAAACAGGAGTGAG---GACAG----GCAGTTTTACGTACAACCGCCTGCATGCTAT--GGTGCTTT
CAAGTTTAATGG
>Rousettus_aegyptiacus
CTAAACATCTCTCTGTCTC-ACTTCCTTCATCTACAAATTGAGGATAGAATGATGGTT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------C--AAAAGGAGTGAG---GATGGCTGGCCAGTTTTGTGTAAAACCACATACATGCTAT--GGTGCTTT
CAGGTTTAATTG
>Condylura_cristata
GTGATCCT--CTGTGTCTC-ACTTCCTTCCTCTGTAAAGCGAGG--AGAATAACGGTC----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------CAAAGAGGAAGTCAG---AAGAG----TCCATTTTGTGTGGAAC-ACCT-----------GGC-CTTT
GAGGATCAGCAG
>Uropsilus_gracilis
CT-ATCCTATCTCAGTTTCAACTTCCCTCCTCTGT-AAATGAGAA-----AATTGGTC----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------CAAAAAGGAAGTGAG---AGAG-----CCAGTTTTGTGCAAAACCACT------------GGTGCTTT
CAGGCTGAAACG
>Homo_sapiens
CTAAACCT--CTGAGCCTT-ACTTCTTTCATCTATTAAATAAAGACATAAAGATGATC----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------AGAAAGGGAGGGGTG---CGTGC----ATAGTTTTGTGCAAAACCACTTGCATGCTAT--GGTGATTA
CAGATTTCATAA



Dog93_LINE

>L1MA9_3END
------------------------------------------------------------------------------AA
GAGATATCTGCACTCCCATGTTCATTGCAGCATTATTCACAATAGCCAAGATATGGAANCAACCTAAGTGTCCATCGACG
GAT----------------------------------GAATGGATAAAGAAAATGTG-----------------------
------GTATATATACACAATGGAATATTATTCAGCCTTAAAAAAGAAGGAAATCCTGCCATTTGTGACAACATGGATGA
ACCTGGAGGACATTATGCTAAGTGAAATAAGCCAGGCACAGAAAGACAAATACTGCATGAT-CTCACTTATATGTGGAAT
CTAAAAAAGTCAAACTCATAGAAGCAGAGAGTAGAATGGTGGTTGCCAGGGGCTGGGGGGTGGGGGAAATGGGGAGATGT
TGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGTACAGCATGGTGACTATAGTTA
ATAATACTGTATT-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-GTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCACCACACACA--------------------------
---------AAAAA----ATGGTA--------ACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCAT
TTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAA
T------AAAGCTGGAAAAA------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------
>Canis_familiaris
CCTCTTATGTACTGTA-------TTTGAAATTTGGTTTGGTAAGCTATTAGCTCTT-----AAAACAAT-----------
-------------------GTTCATTGCAGCATTACTCACAATAGCCAAGATGTGGAAACATCCTAAGTTCCCATTATTA
TATACATATTTATATACTTACATGTATAAATATAAATAATTGTATACATAATATATA-----------------------
--ATATATAAATATATATAATGGAATATTATTCAACCAGGAGAAAGAAATAAA-CCTGCCATTTGAGACAACCTGGGTGA
ACATTGATGTCATTATGCTAAGTACAATAAGTCAGACAGAGAAAGACAAACACTGTATGTTATTTACTTTTATGCAGAAT
CTAAAAAAGCTGAACTTGTAGAAAAAGAGAGTAGGATGGAGGTAACCAGGGGCTGGAGGGTGAAGGAACTGGGGAGATGT
T-----AAGAGTATAAACTTGCAACTTGT--AGATATATAGGTTCTGGAGATCTAATGAACAGCATAGTGATTATAGTCA
ACAATACTATATC-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-ATAAACTTTGAAGTTGCTAAGAGATGAGATCTTAGTTGTTCTCACCACAAAAA--------------------------
---------AGAA-----ATGGGG--------ATCTTGTGATGTGGTAGAGATATTAGCTATTGCTATGATGGTAATCAC
T--GCAGTATATAAATGTATTAAA--ATCATGTTGTACATTTCAAACATCCTCCG-TGTTACACGTCAATTACATTTCAA
TTTTTAAAAGGAGGGAAAAAAAAGAATGGATGTGTTAGTCATTCTGT-AATGCATAAAAAAACAAAAAAATCTAA-----
------------------------------ACGATTTTCAAAGCCCTGAT------------------------------
----------------------------------------------------------------ATTCCTCAAAATCACA
TGGTAACAGA
>Felis_catus
CCTCCTTAATACTACC-------TTTG------------GTGAACTATTAGATTTTT---GAAAACAATTTGCCT-----
-----GTCTGCATGCCCACGTTCTTTGCAGCATTACTCACAATAGCTAAGATAAGGAAACAACCTAAGTGTCCATCATTA
TAT-----------------------------------------------------------------------------
-----------------TAATAGAATAGTATTCAGCCATGAGAAAGAAATAAA-CCTGTCATTGGAGACAACATGGATGA
ACGTTGAAGTCATTGTGCTAAGTGACACAAGTCAGA----GAAAAGCAAACACTGTATGTTATTTACTTTTATGTGGGAT
CTAAAGAAGCTGAACTCATAGAAAC--AGAGTAGAATGGTGGTTACCAGGGGTTGGAGGGTGAAGGAACTGGGGAAATGT
T-----AAGGGTATAAACTTGCAACTGAT--AGATAAATAGGTTCTGGAGATCTAATGAACAACATAGTGATTATAGTCA
ATAATACTGTATTATAAACTTCAAAGGGGCGCCTGGGTGGCTCAGTCGGTTGAGCGTCCAACTTCAGCTCAGGTCACGAT
CTCACTGTCTGTGAGTTTGAGCCCCGTGTCAGGCTCTGTGCTGACAGCTCAGAGCCTGGAGCCTGTTTCAGATTCTGTGT
CTCCCTCTGTCTCTGCCCCTCCCCCACTCATGCTCTGCCTCTCTCTCTCTGTCAAAAATAAATAAACATTAAAAAAAAAT
AATAAACTTCAAAGTTGCTAAGAGATGAGATCTTAATTGTTCTTACCACAAAAA--------------------------
---------AAAAAAAAGATGGGA--------ATTATGTGATATGGTAGAGGTATTGGCTAACACTATGATAGTAATCAT
T--GCAGTATACAAATGTATCCAATCAACACATTGTATACTTTAA-----------TGTTACATGTCAATTCTTCCTTAA
TTTTAAAAAAGGGGGAAAAAAGAGAATGGATGTGATAGTCATTCTAT-GATGCATAAAAGACAAA---------------
------------------------------ACAATTTGCAAAAACCTGAT------------------------------
----------------------------------------------------------------ATTCTTAAAAATCACA
TAGTAACAGA
>Manis_pentadactyla
CCTCCTTAATTCTGTA-------TTTGAAATTTGGTTTTGTAAGCTATTAGCTATTT---AAAAACCATTTGCAT-----
-----GTATGCATTCACATGTTTATTATGGTATTATACACAATAGCCAAGATATGGAA-TAACTTAAGTGTTCATTGATG
GAT----------------------------------GAATGGATAAAGGTCTAGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGTGAATATTATTCATCCATGAGAAGGAAGGAAA-CCTGCCACTTGTGACAACGTGGGTGG
ACTTTGAGGGTATTATGCTAAATGAGATAAGTTAGATAAGGAAAGACAAATACTGTATGAT-CTCACTTTTGTGTGGAAT
CTAAGATAGCTGAACTTGTAGAAACAGAGAGTAGAATGGTGGTTACCAGGGGCTGGAGGATAGAGGAGCTGGGGAGATGT
T-GTTAAAGGACACAAACTTGCAACCAGT--ATATAAATAGGTTCTGGAGATCTGAGGCTTAGCATAGTTTTCATAGTCA
ACAGGAGTGTACT-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-ATAAAGTTTCAAGTTGCTAAGA---CAGATCTTAATTGTTCTCACCACAAACA--------------------------
---------GGAA-----GTGGGA--------A-TATGTGACATGGCAGAGGTGTCAGCTAATGCTATGGTGGTAATCAT
ATAACAATATGATATGGCACCAAATCAACACATTGTGCACCTTAAACTTATGCAA-TGTTAAATGTCAATTATACCTCAA
TTTT-AAAAAAAGGAAAAAAAGTGAATAGATGTCATAGTCATTCTAC-AATGAATAAAAACAAAAAAAACAAACACAG--
------AAAAAATCCCTGCAT---TTAGGCACTACCTGAGAAGGCCTGAT------------------------------
----------------------------------------------------------------ATTCTTCATAGTCACA
TAGTAACAGA
>Sus_scrofa
TGTTCTTAATTATGGAT------TTTAAATTTTGGCTTTGTGAGCTATCAGCTCTTT---AAAAACAATTTGCAT-----
-----GTTTGTCCTCTCA-GTGCACTGCATCATTACTTGCAATAGCCAAGACAGGGAAACAACTTAAGTGCCCATCAATG
GAT--------------------------------------GTATGAAGAAGATGTG-------------------GTAT
ACACACACACATGCACACAATGGAAGATTATTCAGTCACAAGAAAGAAGAAAA-CCTGCCATTTGGAAAAACATGGATGG
ACACTGAGGGCATTATGCTAAGTGAGAGACGTCAGACAGCGAAAGACAAATATTGTATGAT-TTCACTTTTATGTAGAAT
CTAAAAAAGCCAAACTCATAGAAAC----AATAGGATGGTGATTTCCAGGGGATAGAGG-TGGTGGAACTGGGAAGATAC
T-GCTTAAGGGTAAAAATTTCCAACTAAT--GGATAAACAGGTTCTGGAGATCCAATGCACCACGTGGTGAATATAGTCA
ATAATACTGTATTATAAACTTTG---------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------TTTTTATTATAGTTGATTTACAATGTTGTGCCAACTGTAT
TGTAAACTTTAAAGTTGCTAAGAGAAGAGATT----ATGTTTTCAATGCACAAA--------------------------
---------AATGA----ATAAAA--------GTTATGTGATTTAATAGAGATGTT------------------------
-----------TAAATGTACCCAA--------------------------------TGTCGTATGTCAATTATGTTTCAA
T---AGAAAAAGGGAAAAGAAGAGAATAGACGTGATAGTCATTCTGC-AATGCATAAAAAACAAAATAAACAAAATGAAA
CTA---ACAAAAAATCTGAAT---TTAGGCAGTACTTGAGAAAGTCCAATTGGAGTTTCTGCTGTGGTACAGTAGGTTAA
GGATCAGGCATTGCCATAGCGACCAAAAAAAAAAAAAAAAAAAAGAAGAAAAAAAAAAGGTCTGATCTTCTTTGATCACA
TAGTAACAGA
>Bos_taurus
TCTTTTTAATGCTGTA-------TTTGAAATTTGGTTTTGTGAGCTAATAGTTGTTT---AAAAGCAATTTGCAT-----
-----GGTTGTACTCCCATGTTTATTGCAACATTATTCACAATGGCCAAGATATGGAAACAACCTAAGTGTCCATCAGCA
GAT-----------------------------------------------------------------------------
--------------GTCAGATGGAAT--TATTCAGCCATGAGAAAGAAG--AACCCTTCCATTTGGGACAACATGGATGG
ACATTGAGTAAACTATGTTGAGTGACATAAGTCAGAGAGAGAAAGATGAATTCTGTATGAT-CTCACTTTTCTGTGGGTT
CTAAAAAAGTTGAACTCATAGAAAC----AGCAGTATAGTGATTTCCAGGGGCAGGGGAGTTAGGGAACTGGGGAGATGT
T-GCTGAAGGATGAAAACTTGCAACTAGT--CAGTAAATAGGTTCTGGAGATTCAATGCACAACATAGTGATTATAGTCA
ACAATACCGTGCT-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-CTAAACTTCAAAGCTGCTAAGA-------TCTTAATCATTTTCCCTGCATACACATGCACACACACACACACACACACA
CACACACACACACACACAATGAGAATTCGATCATTTTGTTATTTAATAGAGATTACCACCAAGGTTATGGTGGTAATCAT
ATTGCAATGTATAAATGTATTAAGCCAACACACTTCATACCTTAAAAGCACCCAA-TACTATATGTCAATTATTTTTCAA
T----AGAAAAGAGAGAACAAGAGAATGGAGGTGGTAGTCACTCTATAAATGTATAAACAAAAACCA-------------
------AAAAAC------TAT---TTAGGCATTACTTG---------AAT------------------------------
----------------------------------------------------------------GATCTGCATAATCATG
TGGTAACAGA
>Equus_caballus
CCTCCTTACTGCTGTA-------TTTGAAATTTGGTTTTGTGAGCTATTAGCTTTTT-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------GAAAACAATCTGCAT---TTAGGCACTACTTGAAAAGACCCAAT------------------------------
----------------------------------------------------------------ATTCTTCATAATCACA
TAGTGATAGA
>Ceratotherium_simum
CCTCCTTAATGCTACA-------TTTGAAATTTGGTTTTGAGAGCTATTAGCTCTTT-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------AAAAACAATCTGCAT---TTGGGCACCACTTGAAAAGGCCCAAT------------------------------
----------------------------------------------------------------ATTCTTCATAATCACA
TAATGACAGA
>Myotis_myotis
CTCTCTTAATGCTATAGTTAGTGTCTTAAATTTGATTTTGTGAGCTACTGGCTCTTT-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------AAAAACAATCTGCAT---TTAGGTACTACTGGAAAAGGCCCAAC------------------------------
----------------------------------------------------------------AGTCTTCATAATGACA
TAGTGACAGA
>Pteropus_vampyrus
CTTCCTTAATGCTATA-------TTTGAAATTTAATT--ATGAGCTATTAGCTCTTT-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------AAAAACTATCTGCAT---TTAGGCACTACTTGAAAAGGCCCAAT------------------------------
----------------------------------------------------------------ATTCTTCATAATCACA
TAGTGACAGA
>Condylura_cristata
CTT---AAGTGTTATA-------TTTAATTTTTGATTTTGTTAACTAT----TCTTT-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------AAAGACAATCAGCAT---TTAGACACTAATTGAAAA--CTCAAT------------------------------
----------------------------------------------------------------AATC-TCATAACCCCC
TAGTAAGAGA
>Uropsilus_gracilis
TCTCCTGAATGTTATA-------TTTAATTTTTGCTTT-GTGAACTATTAGTTCTTT-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------AAAAACAATCTGCAT---GTAGACACTAATGGAAAA-CCTTAAT------------------------------
----------------------------------------------------------------AATCTTTATAATCACC
TAATAATGGA
>Homo_sapiens
CTTTCTTAATGCTGTA-------TTTGAAATTAGGTTTTGTGAATTATCAGCTCTTT-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------AAAAACAATTTGCAT---TTAGGCACTGCTTGAAATGGTCCAGT------------------------------
----------------------------------------------------------------TTTCTTTATAATTACA
TAGTGACAGA



Dog103_LINE

>L1_CARN7_3END
--------------------------------------------------------------------------------
------CTTATTGTGGTGATCACTTCACAATGTATACAAATGTCGAATCACTATGTTGTACACCTGAAAC--TAATATAA
CATTGTATGTCAATTATACTCAAATAAAAAAA------------------------------------------------
---------------------------------------
>Canis_familiaris
AACATT---TTAGGTGAATAAAGAAATTTGCTCTTTC-ACATATTGGTAATTAATATAC---ATAAGCT------GTTGT
CCT-----------GATGATCATTTTGCAATACATATAATTATCAATTCACTATGTTGTACACCTGAAGC--TAATATAG
CGTTATATGTCAATTATACACCAATTTA------GGAAAAA---ATAAGTCATTACCTT---CTAAAAGTAGAG---CAA
GCAGAAAATAGATTCCCTAATAGACTTAAGAATCATGTG
>Felis_catus
AACATT---TTAGGTGAGTAAAGAAATCTGCTCTTTC-ACATATTGGTAATTCACATAC---ATAAGCT------GTTGC
TCT-----------GGTGATTGCTTTGCGATACATATAAATATCAATTCACTGTGTTCCAAATCTGAAA-----------
-GTTACATGTCAGTTACAACTCAATTAGAAAAAAAAAAAAA---AACAATCACTGCCTT---CAAAAAACAGAG---CAA
GCAGAAAATGGATGCCCTACTGGGCTTTGGAATTGCGTC
>Manis_pentadactyla
AACCTT---TTAGATGAATAAGGTAATCTGCTATTTC-CCACAC------------------------------------
--------------GATGATCACATCACAATATAT--AGTTATCAAATCATCACGATGTACACCTGAAA-----------
-ATAGTATGTCAATTATGCTTCAAT---------------A---AAAAGTCATTGCCCT---CAAAAAATAAGG---CAA
GTAAAAAATGGATTCCATAAAGGGTTTTGAAAATCTGTG
>Sus_scrofa
CAAATTCACTTAGGTGAGTAAAGGAATCTGCTCTTTC-ACATGTTGGTAATTAATGTAC---ACAAGTC------ATTGT
CCT-----------GGTGATTATTTCACAATATTTACAAATATCAAATCATTATGTTGTCCACCTGGAAT--TAATACAA
TGTTACATAACAATTAAATCTCAA----------------A---AAAAGTCATTTCCCT---CAAAAAAAAAAAGATAAG
GAAGAAAATGGGTTTCATAGTGAGTTTAGGAAATTCGCG
>Bos_taurus
CACATT---TTAGGTGAA-AAAGGAATCTGCTATTTC-ATACACTGTTAATTACTGTAC---AGAAATC------ACTGC
CCT-----------GGTAACCATTTCACTATATAT-------------------GTTGTACACCTGAAGCTATAATATAA
TGATATAGGGCAATTATATCTTAA---------AAAAAAAA---AGAAGTCAATGCCCT---CAAAAAATAAGA---CAA
GCAGAGAAGGTATTCAATAGTGGATTTAGGAAACTCGCG
>Equus_caballus
AACATT---TTAGGTAAGTAAAGGAATCTGCTATTTC-ATGCCTTGGTAGTTAATGTAC---AGAAGCC------TTTGT
CCT-----------------------------------------------------------------------------
--------------------------------------------------------------CAAAACATAGGA---CAA
GCAGAAAATGGATTCCATAATGGACTTAGAAAGTTTGTG
>Ceratotherium_simum
AACATT---TAAGGTAAATAAAGGAATCTGCTATTTC-ATACATTGGTAATTAATGTAC---AGAAGTC------TTTGT
CCT-----------------------------------------------------------------------------
--------------------------------------------------------------CAAAAAATAGGA---CAA
GCAGAAAATAGATTCCGTAATGGATTTAGGAAATTTGTG
>Myotis_myotis
GACATT---TTAAGTAAATAAAGGAATGTGGTATTCC-ACACATTGGTAGTTCATGTAA---AGAAGTT------ATTG-
CCT-----------------------------------------------------------------------------
--------------------------------------------------------------T-AAAAATGAGA---CAA
GCAGAGCATGGATTCCACAGTGGTTTTAGGAAATTTGTG
>Rousettus_aegyptiacus
AACATT---TTGGATAAATAAAGGAATCTGCTATTTC-ACACATTGGTAATTGATGTAG---AGAGGTC------ATTCC
ATT-----------------------------------------------------------------------------
--------------------------------------------------------------TAAAAAACAAGA---CAA
GTAGGGAACAGATTCCACAGTG--TCTAAGAAATGTGTG
>Condylura_cristata
GACTTT---GGAGGTGAATAAAGGAAGACTCCGTTCC-ACACACGGGTGATTCACACAG---CCA--CC------GCCAT
CCT-----------------------------------------------------------------------------
--------------------------------------------------------------CAAAGGACAGG----CAG
GCAGAATGTGGACCCCC----ACACTCAGCAATCTGGGG
>Sorex_araneus
AATGTT---TTAAGTGAATAAAGAGATC--ATCTTTCAATATACTG----CTAATATAT---AAAAGTTACTATATTTTC
ACT-----------------------------------------------------------------------------
--------------------------------------------------------------CTTAGAACAAAA---CAG
--------TGGATTCTATAATGAATTTGGAACATCTATA
>Homo_sapiens
AACATT---TTAGGTGACTAAAGGAATCTGCTGTTTC-ACACATTGGTATTTAATGTAC---AGATGTT------GTTGC
CTT-----------------------------------------------------------------------------
--------------------------------------------------------------AAAAAAAAAGTG---TAA
GCTAAAAATAGGTCCCATAATGGGTTTAGAAAATGCGTG



Dog120_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------TAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTT
AAGTGTTCTCACCACACACAAAAAA------------------------------ATGGTAACTATGTGAGGTGATGGAT
ATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATAT
ACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA-------------------------------------
--------------------------------------------------
>U6
--------------------------------------------------------------------------------
--GTGCTCGCTTCGGCAGCACATATACTAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACA
CGCAAATTCGTGAAGCGTTCCATATTTTT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------
>Canis_familiaris
GAAGGAGGGTGATT--TT-TAAAAAGGT-TTCAGGACTTCAAATGGCAATATCTACC----AAA---AAATAAGGCTTG-
--GTGCTTGCTCCAGCAGCACATATATTAAAACTCTAGTGATACAGAGAAGATTAGCACAGCCCCTGTATAAGGATGACT
TTCAAATTCATAAAGTATTCCACA--TTT------------TTTATGATATAGATCAAAATT-TCAAGAAAGTAGATCCT
GAGAGTTTTCATCACAAGG------------ATATTTTTTTTCCTTTTCTGTTTTATTGTATCTACATGAGATAATGG--
CTGCTAACTAAGATGAAAGTGACAATCATTTCACAATA--AACACAAGTCAAACCATTATGTTGTATACCTTAAACTTAC
AC-AGCGATACATGACAATTATACCTCAATAAAACTGGGG-T----AGGA-AGGCTTG---GATATAATTATCCATA-CA
GGCTTT---------------TCTTCTAGTCTAATATTATATCTTAAGAA
>Felis_catus
GAAGGAAATAACTTAAA--AAAAAAGAT-TTCAGGGCTTCAAATACCATCATCTATT-TTAAAA---AAGTAAAGCTCG-
--GTGCTTGTTCCCACAGCACATACACTAAAATCGGAATGATAAAG---AGATCAGCAGGACCCATGCAGAAGGATGGCT
TGCAAATTCGTGAGGCATTCCACA--TTT------------TGTATGATATAGATGAAAATT-TTAAGAAAGTGGATCCT
--GAGTTCTCATCATAAGG---------------ACTTTTTTTTTCTTTTTTTAAATTGTATCTATATGAGATCATGG--
CTGCTGACTAAACTGTCAGCGTTAATCATCTCACAGTG--AACACAAGTGAGGCCATTAAGTTGTATACCTTAAACTTAT
AC-GGTGGTATGTGACAATAATACCTCAGTAAAACCAGGGGT----AGAAAAGTCTTG---GATATAATTATCCTTA-GA
GGCTCT---------------TCATC--------TATTATATCTTAGGAA
>Manis_pentadactyla
GAAGAAAGAACAATGA------AAAAAC-TTCAGGGCTTCAAAAGCCTGTGTATATTAAAAAAA---AAATAAGGCTTT-
--GTGCTGGCTTCAGCAGCACATATACTAAAATTGGAACAATACAGAGAAGTTTAGAATGAACCCTGCACAAGGATGACT
TGTGAATTCACGAAGCATTTCATA-TTTT------------TGTATGATGTACANNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNNNNNNNNN---NNNNNNNNNNNNNNNN-NN
NNNNNN---------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>Equus_caballus
GAAGGAAAAGCAATGA---AAATAAAGT-TTTAGAGCTTCAAATGCTTCTATCTATT----AAA---AAATAAGTCTTT-
--GTGCTCGCATCATCAGCACATATGCTAAACTTAGAATGATACAGAGAAGATGATCATGGTCCCTGCACAAGGATGACT
GGCAAATTCATGAAGTGTCCCATA--TTT------------TGTATGATATATGTGAAAGTTGTTAAGAGACTAGATCCT
AAGAGTTGTCATCACATGG---AAAATTTGTTTTCTTTTCTCTCTTTTTCTTTTTATTGTATCTATATGAGATGATGG--
ATGCTAACTAAACTTATTGTCGTAATCACTTCACACTA--AATCTAAGTCAAACCATTGTACTGTACACCTGAAACTAAT
AC-AGTGATGTATGTCATATGTATCTCAATAAA-CTGGGGA-----AAAAAAGGCTTG---GATTAAATTATCCTTA-GC
GTCTCT---------------TCTTCTAATCTAATATTAAATTTT-TGAA
>Ceratotherium_simum
GAAGGAAAAGCAATGA---AAAAAA-GT-TTCAGGGCTTCAAAGGCCTACATCTATC----AAA---AAATAAGTCTTG-
--GTGCTTGTTTCAGTAGCACATATACTAAAATTAGAATCATACAGAGAAGATTAGCATGGTCCCTGCGTAAGGATGACT
CACAAATTCGTGG-----CCCATA--TTT------------TTTATGATATATATGAAAGTTGTTAAGAGAGTAGATCCT
AAGAGTTGTCATCACAAGGAAAAAAATTTTTTTTCTTTGTTTGCTTTTCATTTTTATTGTATCTATATGAGATGATGG--
ATGCTAACTAAACTTATTGTGGTAATCATGTTACAACG--TATGTAAGTCAAACCATTATGCTGTATATCCTAAACTTAT
AC-AATGATGTATGGCAATTATATCTCAATTAAACCAGGG------AAAA-AAGCTTG---GATTAAATTATTCTTA-CA
GTCTCT---------------TCTTCTAGTCTAATATTATATTTTATGAA
>Sus_scrofa
GAAGGAAAAGCAATGATT-AAAAAAA---TTCAGGGCTTTGAATGCCTACATCTATT----AAA---ATACAAAGCTTG-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------GATTAAATTACCCTTA-GA
GCCTCT---------------TCTTCTATTTAAATATTAACTCTTAAGAA
>Tursiops_truncatus
GAAGGAAAAGCAATGATT-AAAAAAAGT-TTCAGGGCTTCAAATGCCAATATCTATT----AAA---ATACAAGGTTTG-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------GATTAAATTATTCTTA-GA
GCCTCT---------------TCTTCTATTCAAATATTAACTCTTAGGAA
>Myotis_myotis
GAAAAAAAGGCATTGATT-AAGAAAAGT-TTCAGGGCTTTAAGTGCCCATATCTATT----AAA---ATATAAGGCTTC-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------CATTAAATTATCCTTA-GA
GTAT-T---------------TCTTCTGGACAAACAT-AAATCTTAGGAA
>Rousettus_aegyptiacus
GAAAGAAAAGTGATGATTAAAAAAAAGT-TTCAGGGCTTCAACTGCCCATATCTATT----AAA---ATACAAGGCTTG-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------GATTAAATTATCTTTA-GT
GTCTTC---------------TCTTCTTATCTAACAT-AAATCTTAGGAA
>Condylura_cristata
GAAGACAATCCAGTGATT--AAAAATGT-TTCAGGGCTTCAAATGTTTATATT--------AAA---ATGCAAGACCTA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------AATTAAATTATTCTTAAGA
GTCTCT---------------TTTTCTAGTCTATTACTAAGTCTCAGGAA
>Erinaceus_europaeus
GAAAGAAAAG---TGATG---ATAAAATATTTTAGGATTTAAAGTCTTATC-----------TA---TTATAAG-TTAA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------GATTTGTATATTCTTTAGA
TTTTCTATTACATTCAGAGTCTCTCTTAGTTTAATAGTAAATCTTAAGAA
>Homo_sapiens
GAAGCAAAAGCAATGATG---ATAAAGT-TTTGAGGCTTCAAATCTCTATGTCTG------GAA-------GAG-CTTG-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------GATTAAATTATCCTTA-GT
GTCTCC---------------TCTAC---TCTAATATTAAATCTTAGAAT



Dog128_LINE

>L1MAB_EC_
-------------------------------------------------------------------GAACTCATACAAC
TCAATAGCAAAAA---AACCAAATAATCCAATTAAAAAATGGGCAGAGGATCTGAATAGACATTTTTCCAAAGAAGACAT
ACAAATGGCCAACAGGTACATGAAAAGGTGCTCAACATCACTAATCA-TCAGGGAAATGCAAATCAAAACCACAATGAGA
TATCACCTCACACCTGTTAGAATGGCTATTATCAAAAAGACAAGAGATAACAAGTGTTGGCGAGGATGTGGAGAAAAGGG
AACCCTTGTGCACTGTTGGTGGGAATGTAAATTGGTGCAGCCACTATGGAAAACAGTATGGAGGTTCCTCAAAAAATTAA
AAATAG-AACTACCATATGATCCAGCAATCCCACTTCTGGGTATATATCCTAAAGGAAATGAAATCACTAATCTTGAAGA
GATATCTGCACTCCCATGTTCATTGCAGCATTATTCACAATAGCCAAG----AYATGGAAACAACCTAAGTGTCCATTGA
TGGATGAATGGATAAAGAAAATGTG---------------------------GTATATATATACAATGGAATATTATTCA
GCCATA-------------AAAAAGAAAAGAAGGAAATCCTGCCATTTGTGACAACATGGATGGAACCTTGAGGGCATTA
TGCTAAGTGAAATAAGTCAGACAGAGAAAGACAAATACTGCATGATCTCACTTATATGTGGAATCTAAAAAAA-------
--AAAAACCAAACTCATAGAAACAGAGAATAGATTGGTGGTTGCCAGAGGCTGGGGGGTGGGGG------------AAAT
AGGGAGAGGTTGGTCAAAGGGTACAAACTTTCAGTTATAAGATGAATAAGTTCTGGGGATGTAATGTACAGCATGGTGAC
TATAGTTAATAATACTGTATTGTATATTTGAAAGTTGCTAAGAGAGTAGA-TCTTAAAAGTTCTCATCACAMAAACAAAA
AAAAAATTTGTAACTATGTGAGGTGATGGATGTGTTAATTAACTTCATTGTGGTAATCATTTCACAA---TATATACATA
TATCAAATCATTATGTTGTACACCTTAAACATAATACAATGTTATATGTCAATTATATCTCAATA----AAACTGAA---
AAAAAAAAA----------------------------------------------------------------
>Canis_familiaris
TGGTGAAACTAAAGGGTAGTATTTTAAAGTTATGCACATGATAGTTTGTTA---AAAACTGTGA-----------ACAAC
TCAGTAGCAAAAAGAATCCCAAACTGTTTGATTT-AAAATGGGCAAAATCTCTGAATAGACATTTTTCCAAAGAAGACAT
A--GATAGCCAACAGATGTATGAAAGGATGTTCAGCATCTCTCATCA-TCAGAGAAATGCAAATCAAACCTACAATAAGA
TATTACCTCACACCTGTTAGAATGACTCTTATCAAAAAGGCAAGA---AGTAAGTGTTAGTGAAG--------------G
AACCCTTGTGCACTGTTGGTGGAAAT-TAAATTGGT------ACTATGGAAGACAGTGTGGAGGTTCCTCAGAAAGTTAA
AAATAGTAACTATCCTATAATACAGCAATTGCACTTCCGAGTATTCGT-CTGAAGAAAATGAAAACACTAA-CTCAAAAA
GATCTATGCACCCCCATGCTCATTACAGCAATTTTTACAATGGCCAAGATATATATG----------AAGTGTCTGTCCA
TGGATAAATGGATAAAGAT-----------------------------GTGTATAGATGT--------------------
-------------------AAAAAAAAATGAATGCAGTCCTGTCATTTGTGGCAGCATGGATAGATT-TAGAGGATATTA
TCCTATGTGAAACAAGTCAGACAGAAAAAGACAAATGCCACATGATTTCACTTATGTTTGGACTCTAAATAAA------A
ACAAAAACCAAGCTCATAGATACAGAGAACAAATTGGTGGTTGTCAGAG----GAGGTT--GGGTGGGGGTAAGTGAAAT
AGGTGAAAG-GATTCAAAAAGTACAAAATTCCAGGTATAAAATA----AGTCATAGGGATATAATGTTTAGCACAGTGAC
TATAGTTAATAATACTGTATTGCATATGTGAAGGTTAGTAAGATAGTACAGTCTTAAAAGTTCTCATCACAA----GAAA
AAAAATGTTGTAATTAC------TAACAAG--CATTAAGTAGACTTATTGTGGTAATCATTTTACAA---TATATACAAA
TATCAAATCATTATGTTATACATCTGAAAC-TAATATAA---TGTATGTCAGTTATACCTCAGTT--AAAAACAAAA---
TAAAACTGTGAGC---CTT-GCTTATGTGGATACAATTTAAATA------AAATCATTATCCAGGGTGATTAA
>Felis_catus
TGGTGAAACTAAATAGTAGTATTTTAAAGTTATGCACATTATAGCTTGTTA---AAAAACTTGA-----------ACAAC
TCAGTAGCAAAAACAATCCCAAATGATCTGATTTAAAAATGGGCAAAGGCTCTGAATAAACATTTTTCCAAAGAATACAT
ACAGATGGCCAACAGACACATGAAAACAGGTTCAGCATCACTAATCA-TCAGGGAAATGCAAATCAAAATCACAATGAGA
TATCACCTCACACCTGTTAGAATGACTCTTCTCAAAAAGATAAGA-------AGTATTGGTGAGGATGTGGGGAAAAGAG
AAC-CTTGTGCACTGTTGGTAGAAAC-TAAACTGGTACAGCCACTCTGGAAAACAGTGTGGAGTTTCCTCAGAAAGTTAA
AAATAGAAACCATCATATAATATAGCAGTTCCACTTCTGGATATTCAT-CCGAAGAAAATGAAGACACTAA-TTCAAAAA
GATACATGCACCTCCATGCTCATTACGGCAGTTTTTACAGTAGCCAAGATGTATATGGAAATAGCCTAAGTATGCATCCA
TAGATGAATGGGTAAAGAA-GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAATGAAGTCTTGCCATTTGAGACAACATGGATGGACC-TAGAGGGTGTTA
AGCTAAGTTCAATAAGTCA----GAGAAAGACAAATGCCTTATGATCTCAC----AGGTGAAATCTAAATGAA------A
ACAAAAACCAAACTCATAGATACAGACAACAAATTGGTGGCTGCCAGAGATTGGGGGGTAGGGGTGGAGATAGGTGAAAT
TGGTAAAGG-GAGCCAAAAGGTAAAAAATTCCAGTTATAAAATA----AGTCAT-GAGATGTAACGTACAGCATGGTGAC
TGTAGTTAGTAATACTATATTGCATATGTGAAAGTTGCTAAGAGAGTAAA-TCTTAAAAGTTCACATCACAA----GAAA
AA----GTTGTAATTAT------TGACAAA--CATTAACTAGACTTCTTGTG---ATCATTTTACAG---TATATACAAA
CATCAAATCATTATGTTGTACATCTAAAAC-TAATATAATGTTGTATGTCAGTTACACTTCAATT---AAAACAAAG---
CAAAACTGTGAGC---CTT-GCTTACAACGATGGGATGT-AATA------AAATCATTGCCCAAGGTGATTAA
>Equus_caballus
TGGTGACACTACATGATAGTGCTTTAAAATTATATGAATTATAGTTTTTTA---AAAACTATGA-----------ACAAC
TCCATAACAAAAA------CAAGCAATCTGATTACAAAATGAGCAGAGGATCTGAATAGACATTTTTCCAAAGAAGACAT
ACCGATGGCCAACAGGTGCATGAAAAGGTGTTGAGCATCACTAATCACCCAAAGATATGTAAATCAAAACCACAATGGGA
TATCACTTCATGCCTGTTAGAAAGTCTTTTATCAAAAAGATAAGA---AG-AAGTGTTGGTAAGGGT-TGGAGAAAAGGG
AGCTCTTGTGCACTGTTGTTGGGAATGTAAATTGGTGCAGCCATTATGGAAAACAGTGTGGAGCTTCCTCAAAAAGTTAA
AACCAG-AACTACCATATGATCCAGCAATTCCACTTCTGGATATTTTT-CTGAAGAAAATGAAAACACTAA-CTCTAAAA
GATATCTACACTCCCATTTTCATTGCAGCATTATTTCCAAGAGCCAAA----ACATGGAAACAACCTAAGTGTCCATCAA
CGGATGAATGGTTGAAGAAAATGTG-----------------------GTGTATATATATATACAATGGAATATTATTCA
TCCATA-------------A-----AAAAGAATGAAATCATGCCGTTTTTGACAACACAGATGGACC-TTGAGGGCATTA
TGCTAAGTGAAATAAATCAGACAGAGAAAGACACATACCATATGATCTCACTTATATGTGGAATCTAAAACAAATAAACA
AAATAAACCAAGCTCATAGATACAGAAAATAGATTAGGGGTTGCCAGAG-TCAGGGGTTAGAAGTGCTG---GGCAAAAT
GGCTGAAGG-GGGTCA-AAGGTACAAACTTCCAGTTATAAAATAAGT-AGTCCTGGCGATGTAATGAACAGCATGGTGAC
TATAGTTAATAATACTGTATTGCATATTTGGAAGTTGCTAAGAGAG--------TAAAAGTTCTCATTACAA----GAAA
AAAA--TCTGTAGCTATGTATGGTGGTGGA--TGTTAACTAGACTTATTGTGGTGATCATTTCACAATACTATATACAAA
TAGCTAATCATTTTGTTGTATACTTGAAAC-TAATATAGTGTTGTCTGTCAGTTATACCTCAATAGGAAAAAAGAAA---
AAAAACTATGACT---CTT-GCTTACAGGGATGGAATTT-AATAAATATTAAATCATTGCCCAGGGTGATTAG
>Ceratotherium_simum
TAGTAAAACTACATGATAGTATTTTAACTTTATACAAATGACGGTTTTTTA---AAAACTGTGA-----------ACAAC
TCCATAGCAAAAA-----ACAAACAATCTGATTAAAAAATGAGCAGAGGATCTGAATAGACATTTTTCCAAAGAAGATAT
ACAGATGGCCAACAGGTACATGAAAAGGTGTTCAGCATCACTAATCA-TCAAGGAAATGTAAATCAAGACCACAATGAGA
TATCACCTCACGCCTGTTAGAATGACTTTTATCAAAAAGATGAGA---AATAAGTGCTGGCAAGGGTGTGGAGAAAAGGG
AACTCTCATGCACTGCTGGAGGGAATGTAAATTGGTGCAGCCGCTATGGAAAACAGTATGGAGGTTCCCCAAAAAGTTAA
AAACAG-AACTACCGTATGATCCAGCAAGTCCACTTCTGGGTATTTTT-GTGAAGAAAACGAAAACACTAA-CTCTGAAA
GATATCTACACTCCCATGTTCATTGCAGCATTATTTACACTAGCCAAG----ACATGGAAACAACCTAAGTGTCCATCAG
CGGATGAATGGATGAAGAAAATGTG-----------------------GTGTATATATAT--ACAATGGAATATTATTCA
CCCATA-------------A-----AAAAGAATGAAATGGTGCCATTTGTGACAACATGGATGGACCTTTGAGGGCATTA
TGCTAAGTGAAATACGTCAGATGGA-AAAGACAGATACCATATGATCTCACTTATATGTGGAATTTAAAACAAACAAA-C
AGAAAAACCAAGCTCATAGATACAGAAAATAGATTGGTGGTTGCCAGAG-TCAGGGGTTGTGGGAGGTGA--GGCAAAAT
GGGTGAAGG-GAGTCAGAAGGTACACACTTCCAGTTACAAAATAAATAAGTCATGGGAATGTGATGTACAGCATGGTGGC
TATAGTTAATAATACTGCATTACATATTTGAAAGTTGCTAAGAGAGTATA-TGTTAAAAGTTCTCATCACAA----GAAA
AAGA--------AAAATCTATGGTGATGGA--TGTTAACTAGACTTATAGTGGTGATCATTTCACAGTACTATATACAGA
TAGCTAATCATTATGTTGTATACCTGAAAC-TAATATAG---TGTATGTCAATTATACCTC--------AAAAGAAA---
AAAAACTGTGACT---CTT-GCTTATAGGTATGGAATTT-AATAAATATTAAATCATTGCCCAGAGTGATTAA
>Sus_scrofa
TAGTGAAACTACAT-ACTA-CTTTAAAAATTTTGCAAATTGTAATTTGTTA-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-AAAAGTGTGAGC---CTT-GCATACAGGGATGGAATTT-AATA------AAATCATTGTCCAAGGTGATTAA
>Bos_taurus
TGGTAGAACTACATGATGGTACTTTAAAATTTTCCAAATTATCATTTGTTT-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-AAAACTGTGAGC---CTT-GCATAGAGGCATGGAATTT-CATG------AAATCATTACCCAGGGTG-CTAA
>Myotis_lucifugus
TGGTGAAACTATATGATAATATTTTAAAGTTATGCAAATTATAGTTTGTTG-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-AAAACTGTAAGT---CTT-ACTTACAGGGATGGGATTT-AATA------AAATTACCACCCAGAGTCATTAA
>Rousettus_aegyptiacus
TTGTGAAATGGTATGATAGTATTTTAAAGTTATGCAAATTATAGTTTAGTG-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-AAAACTGTGAGT---TTT-GCTAACTGGGATGGAATTT-ATCA------AAATCATCACCCAGAGTGATTAA
>Condylura_cristata
TGGTAAAACTGCAGGAT-ATATTTTGCAG----GCAACTTACAGTTTGTTA-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-AATACTGTGAGC---CTTTGCTGACAAGAGTAAAATGT-AATA------AAATCATTGCCTAGAATGATTAA
>Solenodon_paradoxus
NNNNNNNNNNNNNNNNNNNTATTTT----ACATGAAAATTTCAGTTTGTTA-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-AATACTATGAGC---CTT-GCTTATAGGGATGAACTTT-AATA-----AAAATAATTGCCTAGAGTGATTAA
>Homo_sapiens
TGGCAAAACTACAAAATAATATTTTAAGCTTATGAAAATTACAGTTTATTT-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
AAATATTTTCGGC---CTT-GCTTACAGGGATGTAATTT-AAT-------ACATCACTACCCAGGATGATTAA



Dog131_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------TTTTTCCAGCTTTATTG-AGGTATAATTGACAAATAAAAAT
TGTATATATTTAAGGTGTACAACGTGATGTTTTGATATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAA
CATATCCATCACCTCACA--TAGTTAC--CATTTTTTTGTGTGTGGTGAGAA----------------------------
--------------------------------------------------------------------------------
----------------------------------------------
>Canis_familiaris
CAATGATAT-AAA---------------AATATCTTGAGGAGTA------GGCTCAGTAATTAATTAGCTAATTAATTTA
TTTTTGTTGAGTAGAAGAGT---T-ATTTCATGGAAAGAAA---------TAGCAACACCAAGAGGTGTTAAATTGGATC
AGCTGAAG---TTTGTATTTTCATGCCAA----------TTTTTCCAGTTTTATTGAAAAAAAAATTGACATAC-ATCAC
TCCATAAGTTTAAGAAGTAGAGCATGATGGTTTGATTT--GCATATATTATGAAATGATTACCACA------CTA-GT--
--------TCAGCTAACAATCAGGAAATTCAGTTT--------------------ATCTTG-TCACTCATTAGG----AA
AAAAAAATAGTCACAGATGTGGTAATAAAACAATTCTGTAGCA---TGTAGAAAATTAAAATTGTTCCTTTAAAATATAA
AAAT-----ATCTGGCT-----------TGCAAATTTAATCTGAGA
>Felis_catus
TGAAGAGAC-AGA---------------AATATCTTGAGGAGTAG-----GGCTCTGTA-------AATTAATTAATTAA
TTTTTGCCAAGTAGAAGAGT---TTATTTCATGAAAGAAAAAAAAAAAACCAGCAACACCAAGAGGTGTTAAATTGGATC
AGGTAAAG---TTTATATTTTCATGTCATT---------TTTTTCCAGTTTTATGGAAAAAAAA--TAATGTAC-ATCAC
TGTATAAGTTTAAGGAGCACAACATGATGGTTTGATTT--GCATATACCATGAAATGATTATGACA------CTAGGT--
--------TCAGCCAACATTCAGTAAATTCATTTT--------------------AACCTG-TCACTCATTAGGTAAAAA
GAAAAAACAGCTGCAGATGTGGTAATAAAACAGTTCTGTAAAA---TCTA------TAAAATTGTTCCTTTAAAACATAA
AAAT-----ATGTGGCT-----------TGCAAATTTAGTCTGAGA
>Manis_pentadactyla
NNNNNNNNNNNNN---------------NNNNNNNNNNNNNNNN------NNNNNNNTA-------AACCAACTCATTTA
TTTATGCCAAGGAGAAGACT---TAATTACATGAAAA----------------GAACAGCAACAAGTATTAAATGAGATC
AGCTCAAG---TTTGTATTTGTC----------------ATTTTCCAGTTTTATTG-AAAAATCATTGTCATAC-ATTAC
TGTGTAAGTTTAAGATGTAGAGCTTGATGATTTGACTT--ACATA-----------AATGACCACC------ATAGGT--
--------TCAGCTAACACTCAGTGAGTTTATGTT--------------------AACCTGTTAACTCATTAGG----AA
AAAAAAATACTTGCAGATATGGTAAGAAAATACTC---TAAAC---TGTA------TAAAATTGTTCCTTTAAAA-ATGA
AAAT-----ATCTGGCT-----------CACAAATCAAATCTGAGA
>Myotis_myotis
TGATGATAT-AAA---------------AATATCTTGAGGAGTA------GGCTCAGTA-------AATTCTTTTATTT-
TTGCTTTTAAGTAGAAGACT---TTACTTCATGGAAAAGAA---------TAGCAACACCAGCAGGTATTAACTTAGATA
AGTTGGAG---TTTGTATATCAATGCTATT---------TGTTCCTAGTTTTATTG-GAAAATTCTTGACATGC-ATCAC
TATATAATTTTAACTTAAACAGCAAGATGGTGGGACTT--ATATATATTTTGAAATGAGTATCTCA------ATAAGT--
--------TCAGCTGTCATCCAGCAAACTCATTTT--------------------AAC-TG-TAACTTCGTAGG----GA
AAGAAAATAGCTGCAGGTGTGGTAATAAAACAATTTTCTAGAA---TTTA------TAAAA-TTTTACTTTAAAATATAA
AAAT-----ATCTGGTT-----------CACAAATTTAATCTGAAA
>Rousettus_aegyptiacus
TGATGATATAAAA---------------AATATCATAAGGAGTA------GGCTCAGTA-------AATTATTTTT----
----------TTAAAAGACT---TTACTTCATGAAAGGGAA---------CAGCAATATCAGCAGGTATTAAGTTGGGTC
AGCTGAAG---TTTGTGTTTGTATGCCGATGTTGTTGCTTTTTTCCTTTC--TTTG-AAAAATAATTGACATAT-GTCAC
TATATAATTTTAAGTTATCTAGCATGCTGATTTGATGT--ATATTTATTGTGAAACAATTACCACA------ATAAAT--
--------TCAGCTAATATCTAGTAAATTCATTTT--------------------AATATG-CAATTCATTAAG------
-AAAAAATAGCTGCACATGTGGTAACAAAACAATTTTCTAGAA---TATA------TAAGGTTTTTCCCTTAAAA-ATAA
AAAT-----ATCTGGCT-----------CACAAATTTAATCTGAGA
>Sus_scrofa
TGATAATAT-AAA---------------AATGTCTTGAATAATA------GGCCCAGTA-------AAATAATTTG----
----------TTAGAAAGTT------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------TATTAG--AATTTATTAGC------
-AAAAAATAGCTTCAGATATG--------------CTCTAGGA---TATA------TAAAATAATTCCTTTAAAATTTAA
AAATTTTACATTTAATTAAATTTAAATGTAAAAATTTAATCTGAAC
>Bos_taurus
TGATGATAC-TAA---------------CATATCT-GAGGAATA------GGCCCAGTA-------AATTCATTTATTT-
---------GTTACGAAATT------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------TATTAG-GGATTTATTTGG-----A
AAACAAATAGCTTCAGATGTGATAATAAAACAATTATCTAGAA---TATA------CAAAA-TTTTCCCTTAGAGTATAA
AAAT-----ATCTAGCT-----------CACAAATCTAATGCAAGA
>Equus_caballus
TGATGATAC-ATA---------------AATGTCTTGAGGAGTA------GGTGCAGTA-------AATTCATTT-----
---------------TAACC------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------TG-TAACTCATTAAG-----A
AAAAAAACAGCTGCAGATGTGGTAATAAAACAATTCTTGAGAA---TATA------TGAAATTGTTCCCTTAAAATATAA
AAAT-----ATCTGACT-----------CACAAATTTAGTCTGAGA
>Ceratotherium_simum
TGATGATTT-AAA---------------AATATCTTGAGGAGTA------GGTCCAGAA-------AATTCATTT-----
---------------TAACC------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------TG-TAACTCATTAGG------
AAAAAAATAGCTGCAGGTGTGGTAATAAAACAGTTCTCAAGAA---CATA------TAGGGCCAGCCCC-----------
-----------GTGGCT-----------TAGTGGTTAAGTGTGCGC
>Condylura_cristata
TGACAACAT-------------------AATATCTTGATTAGTA------GACCTAGAA-------CATGTATTCT----
---------------AAACC------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------TG-TGACTC-----------A
GAAAAAAAATCTGCCACTATGGTAATAAAGCACTTTTGTAAGG---TGTA------TAAAAAGTTTCCTTT---ATATAG
AACT----------------------------------ACCTGAGA
>Sorex_araneus
TTATGCTATTTTATAAGCATATAAGCTGGACATTTTAATATCCAGCTACTGGCCCAGCA-------AAATAATTC-----
---------------TTAAC------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------ATG-CATCTC---AGG------
---AAAATA--TGCAAATATAGTAATAAAATGCTTATCTGGAA---TATA------TAAAGTCATTCATTTTTACTGAAA
AACA-GTACCTGTG--------------CATTACTTTAATCTGAAA
>Homo_sapiens
TAATGGTAT-AAA---------------AACATTTTGAAGAGTA------GGTCCAGTA-------AAATAATTTT----
---------------TAAGC------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------TA-TGACTCATTAGA----AA
ACAAAAATAGCTGCAGATGTGGTAATAAAACAACTCTCTAGAA---TGTA------TAGAATTGTCTTTT---AATATAA
AAAC-----ATCTGGCT-----------CAAAAATTAAATCTTAGA



Dog138_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
----------GGCTGGGGGGTGGGGGAAATGGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATA
AGTTCTGGAGATCTAATGT--ACAGCATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAG
TAGATCTTAAGTGTTCTCACCACACACAAAAAAATG-----------------------GTAACTATGTGAGGTGATGGA
TATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGT-ATATCAAAACAT---------------------
----------------------------------------------------------------------------CACG
TTGTACAC------------------------------------------------------------------------
-----------------------------------------------------------CTTAAATATATACAATTTTTA
TTTGTCAATTATACCTCAATAAAGCTGGAAAAA-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------
>Canis_familiaris
TGTCAGCACTTCTGCAGAAATTGCTACCTTGCTAC--TCAGGTTTATCTGTG--TATAGCCTCTC-CTCTC---CAAA--
AGAGGGA--------------GTGAGACTCAGAGAAAGA-TGGTCAAAAGATATAGACTCCCAATTATG--AGACCAAGA
GCCACTGGAGATGTAATGTAGAGAACATAAGAATAGTTGTTAACCTCACTGTGCCCTATATTTGAAAGTTGTTAAGAGAG
TAGATCTTAAAAGTTCTCATCACAAGGAGAAAAACTTTACTTTA------------AAAAAAAATCTATGAGAGGATGG-
-ATGTTAATTAAATTTACTTCGGTACTCATTTTACAA--TAGATGT--AATCAAGTCCT---------------------
----------------------------------------------------------------------------CATG
CTGTCCAC------------------------------------------------------------------------
-----------------------------------------------------------CTTAAATTTACACAG-TCCTG
GCTGTCAATTACAGCCCCAAAAGGCTAGGGG------AGTAGGAGAAT---CAAAAG-CCAAACTA-CAGAAACAACATG
-TAAAATCTTTTTTT-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------AGTATGTATGTTTTAA
>Felis_catus
CTTCCCCATTTCTGCAGAAATTGCCACCTCGTTAC--TCAGAATGACCTACT--TATGGCCTCCT-CCCCC---CAA---
ATAGGGA--------------GGGGGAATTGGAGGAAAG-TGGTCAAAAGACACAAAC-TCCAGTTTTG--AGATAACCA
----------------------------------------------------------------AAACTGGGGATGTATG
TAGATCTTAAAAGTCCTCGTCACAAGGAGAAAAACCTTTTGTTTCTCTTCTTTTTCAAAATATCTGTATGCGATGACAG-
-CCGTTCGCTAAATTTACTGTGGGACTCATTTCACAA--TATACGTCAAGTCAGGTCCT---------------------
----------------------------------------------------------------------------CGTG
CTGTACAT------------------------------------------------------------------------
-----------------------------------------------------------GTGAAACTTACACAG-GGCTG
TATGTCAATTATAGCCCAATAATGCTGGGGTGGG---GGGAGGATAAT---CAAAAG-CCAAAATA-GAGAAACAAAATA
-TAAAA--TGTTTAT-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------AGTGTGTCTGTTTCAA
>Myotis_myotis
CTTCA-CATTACTGCAGAAATTGCTACCTCATTAC--TCAGGATTGTCTTTT--AATAGCCTCTT-CCCCC---ATA---
GGAAGGT--------------GGGGGAATTGGATGAAGG-TGGTCAAAATATATAAACTTCCAGTT-----AGATAAGTA
----------ATGTTATAT--ACAACACGATGACTACAGGTAACACTGCCATATGGTATATTTGAAAGTTGTTAAGAGAG
CAGATATTAAGAGTTCTTATCACAATGGGAAAAAATGTTTTCTC------------------TTTTTTTTGTATGATATG
TATGTTAACTAAAATGTTTATGGTAATCATGTCACAA--TATATGT-AAGTCAAGTTATATTTTTTTTAAAATATATTTT
ATTGATTTTTTACAGAGAGGAAGGGAGAGGGATAGAGAGTCAGAAACATCAATGAGAGAGAAACATCGATCAGCTGCCTC
CTGCACATCCCCCAATGGGGAAGTGCCCGCAACCCAGGTACATGCCCCTGACCGGAATCGAACCCGGGACCCTTCAGTCC
GCAGGCCGAAGCTCTATCCACTGAGCCAAACCGGTTTTGGCGTCAAGTTATATTTTATACTTAAATTTACACAC-TGCTG
AGTGCCAATTATAGCTTAATAAGACTGG---------GAAAGATCGAT---CAAAAA-TGAAAATG-TAGAAACAAAAAT
CTAAAA--TGTTTTC-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------AGTGTGTATATTTTAA
>Rousettus_aegyptiacus
CTCCACTACTGCTGCAGAAATTGCTACCTCATTAT--GCAGGATTATCTGTT--AATAGTCTCTT-CCACT---AAATGT
GGGGGGT--------------GGGAAGACTGGATGAATG-TGGTTAAAAGGTACAAACTTCCAGTTTTG--AGATAAATA
------GGTAATGTAAGGT--GCAATATGAAGATTATAGTTAACACTGCTGTATAGCGTATTTGAAAATTGTTAAGAGAG
TAGAT----AGAGTTCTCATCACAAGGAAAAAATATTTTTTT-----------------GTATCTGTATAAGATGATAG-
-ATGTTAACTAAGTTTATTTTGGTAATCATGTCACAA--TATATGT-AAGTCAAGGCAT---------------------
----------------------------------------------------------------------------TATG
CTGTATAT------------------------------------------------------------------------
-----------------------------------------------------------CTTAATCTTACACAG-TGCTG
TATGTCAATTATAGCTCTGTAAAACTGTGAGAG----AAAGAAATAAT---AAAAAA-TCAAAATA-TAGAAACAAAATT
-TAAAT--TGCTTTC-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------AGTGTGTATATTTTAA
>Sus_scrofa
TGTCACCGTGTCTGCAGAATTTGCTTCCCTGTGACCATCAGGATTATCACT---GGTAGCCTCTT-CCCCT---ATGA--
AGATGGT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------AAAAAAGCCAACATATTAAAAACATGATT
-TTGAA---ATTTTC-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------AGGGTGTCAATTTTTA
>Bos_taurus
TGTCACCGTTGCTGCAGCAATGGCTACCTCATGATAAT-AGGAT------------TAACCTCTT-CCTCC---ATAA--
AAATCAT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------AAAAAG-CCAAAATA-CAGAAACAAGATT
-TAAAA--TATTTTC-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------AGTGTGTAAATTTTTT
>Equus_caballus
CTTTACCATGTCTGCAGAAATTGCTAGCTTGTTAC--TCAGGATTATCTATT--AATAGCCTTTTCCCCCC---ATAA--
GGATAAT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------AAAAAA-CCAAAATA-TAGAAACAAGACA
-TAAAA--TATCTTC-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------AGTGTGTATATTTTAA
>Ceratotherium_simum
CTTTACCACATCTGCAGAAATTGCTACCTTGTTCT--TCAGGATTATCTATT--AATAGGCTTTT-CCCCC---ATAA--
GGATAAT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------AAAAAA-CCAAAATA-TAGAAATAAGATT
-TAAAA--TATTTTC-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------AGTGTGTATATTTTAA
>Condylura_cristata
CTTTA--------------------------TTGC--TCAGGATTTTCTATCTGTATAGTTTCTT-CTGTC---AAAA--
GGATAAT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------AAAAAT-CTAAAGTA-CAGAAAGAAAATT
-TAAAT--TTTTTTC-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------TGTGTA---TTTTT
>Sorex_araneus
CTTTACCACTCCTGCAGAAATTGCC-TCTTGTCAC--TCAGCATGGTCTATT--AATA-TTTCTT-TCCCC---ATAA--
GGATAAC-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------AAAACC-CCAAAATA-TAGAAATAAAAAT
-TTAA----ATTCTTATATATATATATATGTACATATATACACACACACACACACACACACACACACACACACACACGGG
ACTGCATATCAGGCCTGGGGCAGAATGGGCACAGCCAACAGTAAAGCTACTCCCAGTTTGGTGTTTGGTGAATGACTCTG
AGTGTGCTCAGGGACCATTTAGTGCTGGAAATGAAACATGGACCTCCTGTATGTAAAGCATATCACCAGCCTGTTGAGCC
ATATCTCTGGCCCTCAGTGTGTATATTTTTA
>Homo_sapiens
TTTCACCATTTCTGCGGAAATCGCTACCTTGCTCT--TCAGAATTATATATT--AATAACCACTT-TTCCC---ATAA--
GAATAAT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------CAGAAA-CCAAGATA-CAGAAACAAAATT
-TTAAA--TATTTTC-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------AGTGTGTATGTTTTTA



Dog143_LINE

>L1MA9_3END
----------------------------------------------------------------------------TACA
GCATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCACCACA
CACAAAAAAA--TGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACG
TATATCAAAACATCACGTTGTAC----------ACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAG
CTGGAAAAA-----------------------------------------------------------------------
------------------------------------------------------------------------
>Canis_familiaris
ATTCGAAGAGGGAAGGGGTGCTAATTTGCCTGTTGT----TAAGAGTCATTTAT---GAAGAATACTCAGAGA-------
---------TTACACTTAATAATACTGTACTGCATATTTGAGAAGTGCTAAGAGAGTAGATCTTATAAGTTCTCATCACA
AGAAAAACAATTCTGTAGCTAGGTGTAGTGATGG--ATGTTAGCTAGAATTACTGGGGTGATCATTTTGCAGTATATACA
AATATCAAGTCATTATGTTAAAC----------ACCTGAAGCTAATATAA-TGTTATAT-TCAATTATACTTCAATTTGA
GAAAAAAAAAAAAGGAGAG---------TTCCAAACAAAGAAACCCCTCC----------------------AAA-----
----ACCACTCAGAGA---AAA-AGATAAAGGCTTAAATTGCCTATGGTGGCATATG-TTTAACTT--CTGG
>Felis_catus
ATTGAAAGTGTGAAGGGGTGCTAATTTGCATGCTGT----TAAAGGTCATCTAT---GAAGAACACTCAGAGA-------
---------TTATACTTAATAAGACTGTATTGCATATTTGAGAGTTGCTAAGAGAGTAGATCTTGTAAGTTCTCATCACA
AGAAAAAGAATTTTGTGGCTATGTACGGTGATGG--ATGTTATCTAGACTTACTGTTA-----------------ACACA
AATGTCAAATCATTATGTGAAAC----------ACCTGAAACTAATGTAA-TGTTATAT-TTGATTATGCTTCAATTTAA
GAAAAAAAGAAAAACAAAGGAAACAAAATTCCAAACAAAGAAAACCCCCC----------------------AAA-----
------CCGTCAGAGA---AAA-AGATGAAGGTGCACATTGACTACAGTGGCATATG-TTTACCT---CTGG
>Manis_pentadactyla
ATTGAAAGAGTGAAAGCGTACTAATTTGCATGCTGT----TAATGGTCATCTGT---GAAAAACAATC--AGA-------
---------CTATAGTTAATAATACTGTATTGTGTATTTGAAAGTTGCTAAGAGAATAGATCTTAAAAGTTCTCATCACA
AGAAAAAAAAATTTATACCGATGTATGGTGATTG--ATGTTAACTAGACTTATTATTGTGATCATTTTGTAGTGTACACA
GGTGTGGAATCATTATGTTGTACTAATAAAAGACACTGAAACT-ATATAA-TGTTATATGTCAA-----CTTTAA---AA
AAAGGGAAAAAAAGGAAAGAAAATC---TCCCAAACTAAAGAAACCAAAAGCAA------------------AAGC----
----AAAAAGGAGAAA---AAG-AGATGAGAGCTTAAATTTCCTACAGTGGCATATGTTTTAATTT--CTGG
>Equus_caballus
ATTG--AGAGTGAAGGGGCGCTGATTTGCATGCTGT----TAAAGGTCATCTAT---AAAAGACACTCAGGGA-------
---------CCATAGTTAATAATGCTGTATTTTATATTTGA-AGTTGCTAGGGGAGTAGATCTTAAAAGTTCTCATCACA
AGAAAAAAAATTTTGTGACTATGAATGGCGATGG--ATGTTAACTAGAT---TTGTGGTGATCATTTCACAATATCTACA
AATGTTGAATCGTTATGTTGTAC----------ACCTGAACCTAATATAA-TGTTGTATGTCAAGTATACCTCAA--CAA
AAAAAAAAACAAAAGGAAGAAAAT----TCCAAAACTAAACAAACAAGA-----------------------AACC----
----AACACTTAGAGA---AAA---AGGAGAACATAAATTGCCTCCAGTGTCATATG-CTTAACTC--CTGG
>Ceratotherium_simum
ATTGAAAGAGTGCAGTGGTGCTAATTTGCATGCTGT----TAAAGGTCATCTAT---AAAAAACACTCAGGGA-------
---------CTATGGTTAATAACACTGTATTGCATATTTGAAAGTTGCT--GAGAGTAGATCTTAAAAGTTTTCATCACA
AGAAAAAAGA-TTTCTAACTATGTATGGTGATGG--ATGTTAACTAGAT---TTCTGGTGATCATTTCACAATATATACA
AATATTGAATCATTATGTTGTAA----------GCCTGAACCTAATATAA-TGTT-TATGTCAATTATACATTAC-----
-------AAAAAAAACAAGAAAAT----TCCAAAACTAGAAAAACAAACAGCAAACAAACAAACAAACC---AACC----
----AACACTCAGAGA---AAA-AGATGAGAGCATAAATTGCCTACAGTGTCATATA-TTGAACTCCTCTGG
>Sus_scrofa
ATTGAAAGAAGGAAGGGGTGCTCATTTGCACCATCTTA--TAAAGGCCATCTAT--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------AAAA----
----AACATGCAGAAA---AAAGAGATGAGAACATAAACTGCCTACAGTGGCATATG-TTTAACTC--CTGG
>Bos_taurus
TTTAAAAGAAAAAAGGGGCACTCATCTCCATCCTGT----TAAAGGCCATCTAT--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------AAAAA---
----AACACACAGAAA---AAA-GGATGAGAGCATAAGTTTCCTACAGTGGCATATG-CTTAACTC--CTGG
>Myotis_myotis
ATCGAAAGAATGAAAGAGCTCTAATTTGCATGCTGTTAAATAAAGGCCATCTAT--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------AAAA----
----AACACTCAGAGA---AAA-AGATGAGAACATGAATTGCCAACAGTGGCATATG-TTTAACTC--CTGG
>Rousettus_aegyptiacus
ATTGGAAGTATAAAAGAGCTCTAATTTGCAT--------------GTCATCTAT--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------AAAAAAAA
AAAAAACACTCAGAGA---AAA-AGATGAGAGCGTGGATTGCCTACAGCGACGTATG-TTTAACTC--CCGG
>Condylura_cristata
ACTGAAAGAGTGAAGGCTCACTAATTTGCATGCTGT----TAAAGGCCATCTAT--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------AAAA----
----AACACTTAGAGA---CAA-AGATGAGAACAAAAGTTGCCTACAGTGACATATG-TTTAGTTC--CTGA
>Sorex_araneus
ATGGAGAGAGTAAAGACACACCAATTTGCCTGCTGT----TAAAGGCCATTTAT--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------AAAA----
----AATTTACAGAAA---AGG---ATGAGAGTACAAATTGCCTATAGTGGCATATG-TTTAGCTC--CTGG
>Homo_sapiens
ATTGAATGAACAAAAGGGTACAAATTTGCATGCTGT----TAAAGGCCATCTAC--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------AAAA----
----AACACTCAGAGA---AAA-AGATTAGAGCATAAATTGCCTATAGTGGCATCTA-TCTAACCC--CTGG



Dog151_LINE

>L1_CARN7_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------TTTTTTT-------ATTTGAG-TATAATTGACATACAATGTTATATT
AGTTTCAGGTGTAC-AACATAGTGATTCGACATTTGTATACATTGTGAAGTGATCACCACAATAAGTCTAGTTACCATCT
--GTCACCATACAANGTTANTACAATATTATTGACTATATTCNCC-----------------------------------
------------------------------------------------------------------------
>Canis_familiaris
TTTCATGGCACATCAACGCTCCC--------AAGGAACAAAGATAATTCTTTGCCAAGA---------------TGA---
CATAT---TCCACCTTTTTAA-----------------------------------------------------------
--------------------AAAC---------TTTTAAC-------ATT-GAGTTGTAAGTGACATACAATGTTATATT
CGTTTCTGGTGTAC-AGCATAATGATTCGGTATCTGTATACACTGCAAAATGATCACTACTAGAAGTCCAATTAACGTCT
------------AGAAT---TACAACAGTTATTTTT------------CCTGTATCTCTTTTCTTCTGTCTTTA--CTTT
TTTTCT---GAACATAGCTCACTCCCAGCTCAGTCAGAAAAGTCCTGTGGTCCCCCTGGGAGTGTGGAACAG
>Felis_catus
TTTCGCGACACATCAAAGCTCCC--------AAGGGACAGAGAAGATTCTTTGCCAGCA---------------TGA---
CATAT---TCCTCCTTTTTTA-----------------------------------------------------------
--------------------AA-----------CTTTTAA---AAAAATT-GAG-TGACGTATACATATAACATTATATT
CGTTTAAGGTGCACAAACATAATGATTTGATATTTGTATACACTGCAAAATGATCACCACGATAAGTA-----AGAGTGT
--CCCACT------------TACAATGGTTTCTTTC------------CTTGTGTCTATTTTCTTCTGTCTTTACTTTTT
ATTTCT---GAATATAGCTTGTTCC-AGCTCCGTCACCAAAGCCCCT-TGGTCCCCTGGGAATGTGGTCCAG
>Manis_pentadactyla
TTTCCCTACACATCAAAGCCCTC--------TAGGGACAAAAAGAATCCTCTGCCAGAA---------------TGA---
CACAG-----TGCTATTTTTG-----------------------------------------------------------
--------------------AAACT--------CTTTTGT-------ATTAAGG-GATAGAGCCCATG------TATATT
ACTTACAGGTGCAC-AACTTTATGCTTTGGTATGTGCATATACTGCAAGATGATCGCCACAAGAAGTCTAGTTAGGATCT
AAGTCACCAGGCACAGT---TACAAGGTTTTTTCCT------------CGTGT--CTTTCTTCTTCTGTCATAACTCTTT
GTTTCT---GAATGTAGCACATTCTCAACTCTGCCACCAAAG---------TCCCTTGGGAGTGGGACCCAG
>Myotis_myotis
TTTCACTACAAGTCAAACCCCCC--------TACAAACAAAGAGAATCCTCTACCAGAATGATTGAAGTATAACTGA---
CATA----------------------------------------------------------------------------
--------------------AAACC--------TTCTATT----------------------------------------
AGTTTCAGGGGTA--AACATAATGAGTTGATAGTTGTGTGTATTGTGAAATGACCACCCC---AAGTCTAGTTAACATCT
--GCCACCATACATAGT---CACAAAATTTTTTCC-------------CTTGTATCTTTTTTCTTCCATCTTAA----CT
ATTTCT---GAACATAA-TCATTCACAACCCTATCCCCAAGG---------TCTCTTGGGGGTGGGGTCCAG
>Rousettus_aegyptiacus
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------ATT----------------------------------------
AGTTTCAGGTGTAC-AATATAATGACTTGATATTTTTACATATTGCAAAATGATCAC------AAGTCCAATTAACATCT
--GTCACCATATGCAGT---CACAAAATTGTCTTTTC-----------CTTGTGTCTTTTATCTTCTGCCTTAA----CT
ATTTCT---GAACGTAGCTCATTCTTGACTCTGTCACTAAGGCCCCT-TGGTCCCTTGTGCGTGGGGTCCAG
>Sus_scrofa
TTTCACTCTACATCTAAGCCCT---------TAAGAACAGAGAGAATCCTCTGCCTGAA---------------TGA---
CCTACTCCTTTTTTTTTTTTT-----------------------------------------------------------
--------------------TAAC---------TTTTTCT----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------GAACATGGCTCATTCCCAGCCCTGTTACTTGAGTCCCT-CCGTCCCTGGGGAGTGGGGTCCAG
>Bos_taurus
TTTCACTACATGTCCTAGCCCTT--------TAAGAACATAGAGGGTCCTCTGCCTGAA---------------TGA---
CATGT---TCCTTTTTTATT------------------------------------------------------------
---------------------------------TTTTCCT----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------GAACATGGCTTATCCCTAGTTTTGCCACCAAGG----------TCCCTGGAGATGGATTCCAG
>Equus_caballus
TTCCACTCCACATCAAAGCCCTC--------TAGGAACATAGAGAATCCTCTGCCAGAT---------------TGA---
CATATTCCTCCTTTTTTTCTT-----------------------------------------------------------
--------------------AAGTCAT------TTTTTCT----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------GAGCATGGTTCATTCCTAACTCTGTCACCAAGGTCCCA-GGATCCCTTGGGAGCA-GGTCCAG
>Ceratotherium_simum
TTTCACAACACATCAAAGCCCTC--------GAGGAACACAGAGAATCCTCCGCCAGAA---------------TGA---
CATAG---TCGTCTTTTTTTT-----------------------------------------------------------
--------------------AAACT-----CTTTTTTCCT----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------GAACATAGCTCATTCCTAACT--GTCACCAAGGTCCCA-TGATCCCTTGGGAGCG-GGTCCAG
>Condylura_cristata
TTTCACAGCATATCAAAGCCCTC--------TAGGAATATAAAGAAGCTTCTACCAGAC---------------TGA---
CATATTACTTCTCTTTCTTTA-----------------------------------------------------------
--------------------AAAATACAAGATTTATTTCT----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------GAACATAGCTTACTTCTAACTCTGTCACCAAGGACAGAGTTGTCCTTTGGGAACAGGGGCCAA
>Erinaceus_europaeus
TTTCATTATACATCAAAAACTTC--------TAGGGACATGGAAAATCCTTTGCCAGAA---------------TGG---
CATAC--------TTTGCTTAACAAAAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAAAGAGAAAGAAAAAAAG
GAAAGAGGAGAAAGGAAAAGAAAAGAAACTCTTCATTTCT----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------GGATATAG-------------TTGTCACCAAGATCCTT-TGATCCCTTGGGACCTGGAT-CAG
>Cricetulus_griseus
TTTCTTTGTGTTGCTTTGCTCTTCCTGGTTGTACAAAAGTGGAGAACCCTCTGCCCTAA---------------TGA---
CCTGT---CTTTCTGTCTTTT-----------------------------------------------------------
--------------------AAGAC--------CTTTTCT----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------TGACACAG-----CCAGCACTTTGCCACTAAAGTCCTTTTGAACTAC-----ATAGGACCCGG



Dog157_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
---------------------------TTTTTCCAGCTTTATTGAGGTATAATT--GACAAATAAAAATTGTATATATTT
AAGGTGTACAACGTGATGTTTTGATATACGTATAC--ATTGTGAAA----TGATTACCACAATCAAGCTAATTAACATAT
CCATCACCTCACATAGTTACCATTTTTTTGTGTGTGGT------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----GAGAA-CACTTAAGATCTACTCTCT-------------------------------TAGCAAATTTC-AAGTATAC
AATACAGTATTATTA-----------------------------------------------------------------
-------
>Canis_familiaris
AAATGAGTGATAAATAGCTAACTTTTGTAAGTTATTTA--------AAGAAGGGACTTG---ATACATTTGAT-------
-TTTTT-------------------------------TAAATTGAGGTATAATT--GACATAT-AACATTATACCAGTGT
CAGGTGCACAACACATTAATTTGGCATTTTTATAT--ATTGCAAAA----T-ATCACCCCAATAAGTCTAGTGAAC--AT
CCACCTCCATACATAGTTA--AAATTTTT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------TAT--------------------------------------------------------------
------------------------------------------------------------------------------TG
TGATAAGAA-CCTTTAAGATGGGTTCTCT-------------------------------TAGCAACTTTC-AAATATAC
AACAC-------------GT----TT-ATGTCT---AATGCTTTCTCCCACATATCATATTTGCTACCTGTATTAAACAT
TCCTAAT
>Felis_catus
AAATGAGTGAGAAATAGCTAACTTTTGTAACTTGTTAA--------AAGAAGGGATCTG---GCATATTTGAT-------
-TTTTT------------------------------TTT--------TTCAATT--CACAT----ACATTATACTAGTTT
CAGGCATACAACACATTGATTCAATATGTGTATAT--ATTGCAAAA----TGATCACCACGGCAAGTCTAGTTAAC--CT
CCATCACCACATGCAGTTC-TACATTTTTT--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------CCT--------------------------------------------------------------
------------------------------------------------------------------------------TG
TGATGAGGA-CTTTTAAGATCTGTTCTCT-------------------------------T-GCCACCTTC-CAATATAC
AATAGT------------GTATATTT-ATTTCT---AATGCTTTCTCCCGTATTTCATATTTGCTACCTGTATTAAACAT
TCCTACT
>Manis_pentadactyla
AAATGAGTGATAAACAAC-----TTTATAAGTGATTA---------AAGAAGAGATCTT---GTATATCTGAT-------
-ATTTT------------------------------TTTAATTGAGATACAATTTAAACATAT-AACATCATATTAGTTT
CATATTAACAACACATAGATTTGGTATTTGTATAT--GTTGAGAAA----TTATCACCACACTAAGTCTAGTTAAC--AT
TCACCACCACATGTGGTTA-CAAATTCTTTCT------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------CCT--------------------------------------------------------------
------------------------------------------------------------------------------TG
TGATGAGAT-CTTTTGAGAT----TCTCT-------------------------------TAGCAACTTCC-AAATATGC
AATAT-----------------ATTTGATTTTT---AAAGCATTGTCCTATACATCGTATTTGCTACTGCTATTAAACAT
TCCTATT
>Equus_caballus
AAATGAGTGATAAACAGCTAACTTTTATAAGTGATTAG--------AAGA-GGGATCTT---GTACAGTTAAT-------
-TTTTT------------------------------TTAAATTGAGATATAATT--GACATAT-AACATTATATTAGTTT
CAGGTGTACAACATATTGTTTCAGTATTTGTATAT--ATTGGTAAA----TGATCATCACAATAAGTCTAGTTAAC--AT
CCACCACCACAT---GTTA-CAAATTCTCATTTCTTGTGATGAAAAACTTTTTTTTTTTTATTTTTATTTTTTTCGGATG
TCCATCATATTTCAAATTCTGGATACATTACATCATGTTCACCTCCTGAACACTAATTATAGTGCGTCCCCTCACATGTG
ACCCTAATCACCCCTTTTGCCCTCCCCACCCTTCCCCAATGGTAACCACCAGTCCAATCTCCAATGCTATGTGTTTATTT
TTTTTGTCGTTTTTATCTTCTACTTGTGAGTGAGATCATATGGTATTTGACTTTCTCCCTCTGACTTATTTCACTCAGCA
TAATACCCTCAAGGTCCATCCATGTTGTCACAAATGGCTGGATTTCATCATTTCTTATGGCTGAGTAGTAGTCCATCATG
TGATGAAAAACTTTTAAGATCTACTCTCT-------------------------------TAGCAACTTTC-AAATATAC
AGTGTT------------GTATATTTGATTTTT---AATGCATTCTCCCACACATCATATTTGCTGCCTGTATTAAACAT
TCCTACT
>Ceratotherium_simum
AAATGAGTGATAAACGGCTAACTTTTATAAGTGATTAG--------AAGAAGGGATCTT---GTATAGTTGAT-------
-CTTTT-------------------------------TAAATTGAGATATAATT--GACATAT-AACATTATATTAGTTT
CAGCTGTACAACATATTGATTCAATACTTGTATAT--ATTGTGAAA----TGATCATCACAATCAGTCTAGTTAAC--AC
CCACCACCACATGTAGTTA-CAAATTTTTTT-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------TCT--------------------------------------------------------------
------------------------------------------------------------------------------TG
TGATGAGAA-TTTTTAAGATTTACTCTCT-------------------------------TAGCAACTTTC-AAATATAC
AATATA------------GTATACTTGATTTTT---AATGCATTCTCCTACACATCATATTTACTACCTGTATTAAACAT
TCCTACT
>Myotis_myotis
AAATGAGTGATAAGCAGCTAACTTTTATAAGCGATTAG--------AAGAAGGGATCTT---ATATATTTGAT-------
-TTTTT---AAAAAATCGAGATATTCACACATAACATTATATTGAAACATTATT--GACATAT-AACATTATATTAGTTT
TAGGTATACAGTACAGTAATTTGATATTTGTATAT--AATGTGAAGTGATTGATCACCACAATAAGCCTACCTAGC--AT
CCATTGTTTCAC--AGTTA-CAATTTATT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------TCT--------------------------------------------------------------
------------------------------------------------------------------------------TA
TGATGATAA-CTTTTAAGATCTACTGTCT-------------------------------TAGAGACTTTC-CAATAAAT
AATATA------------GTATGTTTGATTTTT---AATACATTCTCCCACA--TCATATTTGTTACCTGTATTAAACAG
TCCAACT
>Rousettus_aegyptiacus
AAACAAGTGATAAACGGCT----TTCATATGTGATTAG--------AAGAAGA-----------------GAT-------
-TTTTT------------------------------TTTAAATGAGATATAATT--GACATAT-AACATTACATTAGTTT
CAGGTATA----ATATTGATCCAACATTTTTACACTAAATGGGAAA----TAATCACCACAATAACTCTAGTTAAC--AT
CCATCATGACAC--AGTTA-CAATTTTTT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------TCT--------------------------------------------------------------
------------------------------------------------------------------------------TG
TGATGAGAA-CTTTTATGATCTACTCTCTTTCAGATATATAACATAGTATGTTTGATTTCTAATG-CTTTCAAAATATAT
AATACG------------GTATGTTTGATTTTT---AATGCTTTCTTTCACACATCATATCTGCTACCTGTATT-AACAT
TCCAACT
>Sus_scrofa
AAATGAGTGATACACAGCT----TTTATGATTGA------------AAAAAAGGATCTT---GTATATTTGAT-------
-TTTTT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------AATGCCTTCTCCCACACATTATATTTGCCACCTCTGTTAAATAC
CCCTGCT
>Bos_taurus
AAATAAATGGTAAATAGCTAACTTTTATATGTGAT--A--------AAGAAGGGATCTC---GTATATTTGAT-------
-TTTTT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------AATGCATTCTCGCACACATCATATTTGTTATCTCTGTAAACACC
CACTACT
>Condylura_cristata
AAATGAGTGATAAAGA--TATCTTTTCAAGGGGATTAG--------AGGAAGGAAT-TT---GTGTATTTGAT-------
-TTTTT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------AATACATCCTCCAACATTTT-TATTTGCTAGCCATATTAAA-AC
TGCTATT
>Solenodon_paradoxus
AAATGAGTGATAGGTAATTA-----TACAAACCATTTAATTCTTTTAAGAATGGATTGT---TTATATTTGATTTTTCAT
AATTTT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------AATACATTCTCCTACATATCATATTTTCTATCTATATTAAAAAT
TCCTACT
>Homo_sapiens
AAATGAGTAGTAAACATTTAAC-TTTATAAGGGATTGT--------AAAAGGAGATCTT---ATATATTTGA--------
-TTTTT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------AATGTATTCTCCTACACATCAGACTTGCTATAGGTATTGAACAC
TTCCACT



Dog180_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
-----------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATG
TTTTGATATACGTATACATTGTGAAATGATTACCACAATCAAG-CTAATTAACATATCCATCACCTCACATAGTTAC---
-CATTT-TTTTGTGTGTGGTGAGAACACTTAAGATC----TACTCTCTTAGCAAATTTCAAGTATACAATACAGTATTAT
TAACTATAGTCACCATGCTGTACATTAGATCTCCAGAAC-----------------------------------------
---------------------------------
>Canis_familiaris
CCCT--------TTGCTTCTTACCTCTAAGTG-CTTC-----TGTTGGCAGAGCTAAGAAAGAA---A-GGTTTAAATTT
TAA---------CCTTTTTCAAAAAGTGAGGTATAGTTAACATATA-ACAC--TATTAGTTTCAGGTGTACAGCGTA---
ATTTGCTATTTGAATATATTATGAAATGATCACCAC-AT-AAGTGT---CATCATTT--ATCACCTTACATAGTT-TAAA
AAATTTCCTTTTATTGTAATGATGACTTTTAAGATC----TGTTCTCTTAGCAACTTTCAAACATGCAATACAGTCTTAT
TAACAATAGTCACCATGCTGGCTGGTAT--------------AACCTCC-AAATTTTAA---TCTCTTGATGAAATAAAG
TCCATCCATTCTACA-TTGTGGTTTTAAATATG
>Lynx_canadensis
CCCT--------TTGCTTCTTACCTCTAAGTG-CCTT-----TGTTAGAGAGACGAAGAAAGGA---A-GGCTTAAATTT
TAA---------TCTTTTTTTAAAC-TGATGTGTGATTAACATATA-ACGCTGTATTAGTTTCACGTGTACAATGTA---
ATTTGATATTTGAATATATTACAAAATGATCACCAC-AG-AAGTGTAGCTAACATTT--GTCACCTTACATAGCTACATA
AAATTTCTTTTTCTCCCAATGAGGACTTTTAAGATC----TACTCTCTTAGCAACTCTCAAATATGCAATATAATATTAT
TGACTCTAGTCACCATGCTGGACAGTAC--------------ATCTCCC-AAATTTTAA---TCTCTTGATGAAATAAAG
TCCATCCATTCTACCTTTGTGGCTTTAAATATG
>Manis_pentadactyla
CCTT--------TAGCTTCTTACCTCTATGTGCCTTT-----TGTTGGAAGGGCTAGGAGAGAG---AAGTCTTAAATTT
TAA---TC-TTTCCTTTTTTTTAAATTGAGGTATAATTGACATGTA-ACATTATATTAGTTTCAGGTGTACAATGGA---
ACACAATAATTGAGTATATTGCAAAGTGATCATCCC-AGCAAGTGTAGTTCACATCT--GTTGCCTTACATAGTT-----
AAATTAGTTTTTCTTGTGATGAAGACTTTTAAGATCTACTTACTCTCTTAGCAACCTGCGAATGTGTA--ACAGTATTAT
TAGCTATAGTCATCATGTTGTATATTAC--------------ATCTCCC-AAATTTTAA---TTTATTGATGAAACAAAG
TCTAACCATCTTACATTTGTG-CTTTAAATATG
>Equus_caballus
CCTT--------TTGCTTCTTACCTCTAAGTGCCTTT------GTTGGAGGGGCTAGGGAAGGA---A-GAC--AAATTT
TAA---TCTTTCTTTCTTTTTTCAGTTGAGTTATAATTGACA-----------TATTAGTTTCAGGTATACAACATAATC
ATTTGATATTTGAATATATTGCAAAATGATCACCAA-AGCAAGTGTAGCTAAAATCC--ATCACCTTACATAATTACACA
ACGGTTTTGTTTCTTGTGATGAGGACTTTTAAGACC----TGCTCTCTTAGCCACTTTCAAATATGCAATACAGGATTAT
TAGCTAGAGTCGCCATGCTGTACATTAT--------------ATGCCCT-GAATTTTAA---TCTCTTGATAAAATAAAG
TCTGTCCATTTTACATTTGGGGTTTAAAATATG
>Tapirus_indicus
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNN
NNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNATG--GACTTTTAAGATC----TACTCTCTTAGCAACTTTCAAATATGCAATACAGAATTAT
TAACTATAGTCACCATGCTGAACATTGC--------------ACCCCCCCAAATTTTAA---TATCTTGATAAAATAAAG
TCCATCCATATTACCTTTTTGATTTTAAATATG
>Sus_scrofa
CCCT--------TGGCTTCTTACCTCTAAGTACCTTT-----TGTTGCAAGGACTAGGAAAAGG---AACGCTTGAATTT
TCA-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------TCTCTTGATGAAATGAAG
TCCATTCATTTCACATTTGTGGTTCTAAATGTG
>Bos_taurus
CCTT--------TGGCTTTTTACCTCCAAGAGCTTTT-----TGTTGCAGGAGCTAGGAACAGG---AACACTTGGATTT
TAA-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------TCTCTTGATAAAATGAAG
TCTATCCATTTTACATTTGTGGTTTTAACTATG
>Myotis_myotis
TCCT--------GTGCTTCCTACCTCTGGTTACCTTT-----CCTGGGAGGGGCTGGGCAAAGA---AAAGCTTC--CTT
TAA-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------TCTCTTGATGAATTAAAG
TCCGTTCATTTTACATTTGTGGCTTTACATATG
>Rousettus_aegyptiacus
TCTTAAATCTAAGTGCTTCTTACCTCTAAGTGCCTTTTTGTGTGTGAGAGGGGCTAGGAAAAAG---AAGTCTTAACTTT
TAA-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------TCTCTTGATGAAATGAAG
TCCACCCATTTTACATTTGTGGCTTTAAATATG
>Condylura_cristata
TCCT--------TTGTTTCTTACCTTTAATTGTCTTT-----CTTTGGAGGGGCTAAGAAAGGG---AAGACTCCAGTTT
TTA-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------TCTC-TGATGAAATACAG
TTCATTCATTTTACATTTGTGGATTTACATATG
>Sorex_araneus
TTCT--------TTGCTTCTTTCCTTAAAATAACTTT-----TGTTGGA-GGGCTAGCAGAGGA---ATAAAAACA-TTA
ATA-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------TCT--TCATAACATAATA
TTTATTCATTTTGTATTTATGATTTTAGATATG
>Homo_sapiens
CACT--------TTGCTTCTGACCTCTAAGTGTCCTT-----TGTTGAAAGGGTTAGGAAAAGA---AAGGCTTAAGTT-
TAA-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------TCTCTTGATGAAATAAAG
TCTATTCATTTTCAATTTGTGGTTTTAAATATG



Dog184_LINE

>L1MA9_3END
-------------------------------------------------------------------------TGGTTGC
CAGGGGCTGGGGG--GTGGGGGAAATGGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTT
CTGGAGATCTAATGTACAGCATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATC
TTAAGTGTTCTCACCACACACAAAAA--------------------AATGGTAACTATGTGAGGTGATGGATATGTTAAT
TAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTT
TATTTGTCAATTATACCTCAATAAAGCTGGAAAAA---------------------------------------------
-----------------------------------------------
>Canis_familiaris
AAACCA--AGGTTCAATGATAAAGTCATATAAATGAGTTCTGCATTATGCAG-----AAGTTTATTTGCC----------
-AAAGACAAA-----GCTGGGGGGATGGAAAGAAGATGGTCAAAGGATACAAAATTCCAGTTATA--AGATAGATGGATA
CTGAGGATGTAATGTGCAACACGAAGACGATACTTAACACCACTCTATGATATATAGGTAGATTTTTGGGAGAGTGGATC
CTGAGATTTCTCATCACAGGGAGAAA-----TTTTCTTTTTTTCTTAATTGTATTTTAGCGAGATGATGG--ATGTTAAC
TGGACCTGATGTGGTAAGCATTTCACAA--TAGATGTAAATCAAACCATCATGATGTACACCTTGAGCATCTACAGTGAT
CTACATC-AATGATTTCTCAATAAAACTACAAAAGACGTTTTTT-------AAAACTTTATTTACT---AACCATTCATA
AGAATGAAATTTTAG-ATTTTAAA-TGTTTTCTACAAGTTATTATAA
>Felis_catus
AAACTA--AAGTTCTATGATAAAGCCATGCAAATGAGCTCTTCATTGTGCTT---AGACGTTTATTTGCT----------
-AGAGATGGGGGGGGGGGAGGGGAAT-GGAAGAAGGTGGCCGAAGAGTACAAAATTCCAGTTATA--AGAGAGATGAGTA
TTGGGGATGTAATGTG----------------GTTGATGCTGCTCAATGATATACAGGTAGAGTGTTGGAAGAGTGGATC
ATAAGAGTTCTTATCACAAGGAGAAATTTGCTTTTTTTCTTTTTTTTTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------NNNNNNNNNNNNNNN---NNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>Equus_caballus
AAACTA--AAGTTCAATGACAAAGCTGTGTAACTTAGTTCTGCATTATGATT---GGAAGTTTATTTGCT----------
-GGAAGCGGGGGCATGGGAGGGGACTTGGAGGAAAGTAGTCACAGGGTACAACCTTCCAGTTCTG--AGACAGATGGGTA
CCAGGGAGGCAATGATCATTACGATCACTGT-GCTAACACTGCCGCATTGTGCACAGGAAGGTTGCTGGGAGGGTGGATC
TGAAGAGTTCTCATCACAAGGAGAAATTT--TTTTTCTTTTCTTCTTACTGTATTTTTGTGAGATGATAG--ATGTTAAC
TAGACCTATT---ATAATCATTTCACAA--TATACGTGAAGCAAACTATCACACTGTACACCTTGAACTTATACAGTGAT
GTATGTCGAATTATTCCTTAATAAAACTGGAAAAAATATTTTTAAAA----AGAAGTTTATTTGCT---TATCATTCATA
AGGATGAAATTTTAG-ATTTTAAA------------AGTTATTATAA
>Ceratotherium_simum
AAACTA--AAGTTCAATGACAAAGCCGTGTAAATTAGTTCTGCATTATGATT---AGAAGTTTATTTGCT----------
-AGAAGCAAG----------------------------GTCAAAGAGTACAAAATTCCAGTTATG--AGATAGGTGGGCA
CTGGGGCTGTAATGTTCTACACGATGACTAT-GCTAACACTGCTGTATGATATAGAGAAAGGTTGTTGGGAGAGTGGATC
TTGAGAGTTCTCATCACAAGGAGAAATTTTTTTTTTCTTTTCTTTTTATTGTGTTTTTGTGAGATGCTAG--ATGTTTAC
TAGACCTATTGTGGTAATCATCTCACAA--TATAGGTAAAGCAAACCATCATGCTCTACACCTTGAACCTATACAGTGAT
GTATGTCAAATTATTTCTCAGTAAAACTGGGAAAAAAATTTTTTAAAA---AGAAG----TTTACT---TATCATTCATA
AGGCTGAAATTTTAG-ATTTTAAA-TATTTTATAAAAGTTATTATAA
>Sus_scrofa
AAACTA--AAGTTCACTGACTAAGCCATGTGAATTAGCTCTGCATTTTTATT---AA-------TTTGCT----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------AATCATTTGTA
AAGATGGAATTTTAGCATTTTAAG-TATATTCTCAAAATTATTATCA
>Bos_taurus
AAGCTG--AAGTTCAATGATTAAGCTGTATAAATGAATTCTGCATTATTATT---AGCAGTTT-TTTGCT----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------AATAATTCTTA
AGGATAGAACTTTAG-ATTTTACA-TATTTTCTAAAAGTTCTCGTAA
>Myotis_myotis
AAACTA--AAGTTCAGGGCTAAAGCCATGTAAATTATTTATGCATTTTGATT---AGAACATCGTTTGGT----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------AATCATTCTTA
AGGATGAAATTTCAG-ATTTTAAA-TATTTTCTAAACATTATTATAA
>Rousettus_aegyptiacus
TAACTA--AACTTCAATGATAAAGACACACGAATTAGTTCTGCATTATGATT---AGAAGTTTCTTTGTT----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------AATCATTCACA
AGGATGAAATTTGAG-ATTTTAAA-TGTTTTCTAAAGGTTATTATAA
>Uropsilus_gracilis
AAACTACACAGCTCAATGATAAAATCATGTACATTAGTTCCACATAATGATT---AGAAGTTTAACTGCT----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------AGTTATTCATA
AGGATCAAATTTCAG-ATTTTAAA-CATTTTCTAAAGGTGATTATAA
>Sorex_araneus
AATCTA--AAGTTTAATGACAAA-GCATGGGCATAAATTCCATGTTATAATT---AGGAGGTTGTTTA------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------AATCATTGATA
GGAATGAAATTTTTG-ATTCTAAA--GTTTTCTAAAGGTTGTTATAA
>Homo_sapiens
AAACTT--AAGGTCAATGATCAAGCCATGTAAATTAGTTCTGCACTGTGGTT---AAAAATTTACTTTAG----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------GACAAATC---
---CTGAAATTTTAG-ATTTTAAA-AGTTTGCTTAAACT-ATTATAA



Dog254_LINE

>L1MA9_3END
-----------------------------------------------------------------------AGGGTACAA
AGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGATC-------TA-ATGTACAGCATGGTGACTATAGTTAATAATACT
GTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCACCACACACAA--AAAAATGGTAACTATGTGA
GGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAAT-GTATACGTATATCAAAACATCACGTTG-TACA
CCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGC---------------------------------
-------------------------------------------------------------------------------
>Canis_familiaris
TCATGGCAGATAAAATAGGAAGCTTTGGTAATATGGTAGCCATATCTATC---AAAAGAAAT-AAAAT------------
-----------------------------------TA-------TATATATATAACTTGGTGACTGTATCTACTAGTATT
GTACTGTATATTTGAAAGTTGCTAAGACCACAGATCATAAAAGCTATCATCACAAGAATG-AATATTTGTGATTATATGT
GGTG-TGG--ATGTTAACTCGACTTACTATGGTGATCACTTTGTAATAATATATAAATATCGAATCATTATGTTATTATA
CCTGACATTAA-------------TGTCAATTACATCTC-----------AATAAA---AAAAGT---ACAAATATGCAA
AATGAGGAACA-AATAATCTCACGTGG-------------------------------TGTATACAGAACATG----TA
>Felis_catus
TCATGGCAAATAAAATATGAAGCTTTGGTAATATGGTAGCCATACCTATG---GAAACAAACACAAAT------------
CATTTTAGCAAT--TAAATAAAAAATTTATTAGAATAAAATAAGTA-AAATACAGCATGGTGATTATATTTAATAATACT
GCACTATATGTTTGAAAGTTGCTAAGAGCATAGATCTTACAAGTTCTCATCATAAGAAGA-AATATTTGTAATTAAGTGT
GGTG-CGA--CTGTTAACTAGATGTACTGTGATGATCATTTTGTAAT-ATATACAGATATTGAAACACTGTATCG-CATA
CCTGAAACTAA-------------TGTCAGTTATATCTC-----------AGTTAA---GGAAAT---ACAAATATGCAA
AATGAGGAACA-CATAATTCCACACAG-------------------------------TGTACATT-----------TG
>Manis_pentadactyla
TCATGACAGATGAAATATGAAGCTTTAGTAATATGGTAGCCATACCTGTC---AAAACAAAT----AT------------
-----GAGTTAT--AAAAT----GAGTCCTGGGGATG-------TA-ACATACAGCATGGTGACTATAGTTAATAATACC
GTAGTGTATATTCAAAAGTTACTAAG--CATAGATATTAAAAGTTCTCATCACAAGAAAATAAAACTTGTAACTATGTAT
G--AATGA--AGGTTAACTAGACTTATTGTGGTGATCATTTTGCAAT-GTGTGCAAATATAGAATCATTATGTTA-CATA
CCTGAAACTAATATAA-TGTTATATGCCAATTGTATCTC-----------AATAAAAAACCAAAT---ACAAATATACAA
AATGAGGAACA-AATAATTCTACACAG-------------------------------TGTACATAGAACATG----TA
>Equus_caballus
TCATAGCAGATAAAATATGAAGCTTTGGTAATATGGTAGCCATACCTTTC---GAAACAAAA-----T------------
---------AAT--AAAAT----GGGTCATGAGGATA-------TA-ATACACAGCACGGTGACTAGAATTAATAATACT
GTATTGTATATTTGAAGGTTGCTAAGAGAATAGACCTTAAAAGTTCTCATCACAAGAAA--AAAATTTATAACTATGTGT
GGTGATGG--ATGTTAACTAGTCTTATGGTGGTGATCAATCTGCAAT-ATATACAATTATCAAATAATTACACTG-TACA
CCTGAAGCTAATATAA-TGTTCTATGTTAATTATATCTC-----------AACAAA---AGAAGA---A-----ATGCAA
AATGGGAAAAA--ATAATTCCACATGG-------------------------------TGTACATACACTATG----TA
>Ceratotherium_simum
TCATGGCAGATAAAATATGAAGCTTTGGTGATATGGTACCCATACCTATC---AAAAGAAATACAAAT------------
---------AAT--AAAATAACTAAGTCATGGGGATA-------TA-ATATACAGCACGGTGACTATAGTTAATAATACT
GTACTGCATATCTGAAAGATGCTAAGAGAGTAGATCTTAAAAGTTCTCAACACAAGAAA--AAAATTTGCAACTATGTGT
GGTGATGG--ATGTTAACTAGACTTACTGTGGTGATCAATCTGCAAT-ATATACAAATATCAAATCATTATGTTG-TACA
CCTGGAACTAATATAA-TGTTATATGGAAATTATATCTC-----------AATAAAAAAACAAAT---AC----ATACAA
AATGAGGAAAA-AATAATTCCACATAG-------------------------------TGTACACAGAATATG----TA
>Sus_scrofa
TCATGGCAGATAAAATATGTACCTTTGGTAACATGGTAGCCATACCTATC---AATACAAATACAATT------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------AC----ATGCAA
AATGAGGAACA-AATAATTCCACACAG-------------------------------CATACACAGAACATGT---AA
>Bos_taurus
TCATGGCAGATAAAATACGAAGCTCTGGTGATATGGTAGCCATACCTATC---AATACAAACATGGTT------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------AC----ATGC-A
AATGAGGGACA-AATAATTGGGCACAG-------------------------------TGTACACTGAACATGTATCTA
>Myotis_myotis
TCATGGCAGATAAAATATGAAGCTTTGGTAATATGGTAGCCATACCTATC---AAAACAAATACAAAT------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------AC----ATGCAA
AATGAGGAACA-AATAATTCTGCATAG-------------------------------CGTATACAGAACGGG----CA
>Rousettus_aegyptiacus
TCATGGCAGATGAAATATGAAGTTTTGGTAATATGGTAGCCATACCTATC---AAAACAAATACAAAC------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------AC----ATGCAA
AATAAAGAACA-AATCATTCTGCATAG-------------------------------GGCACACAGAACATG----TA
>Condylura_cristata
TCATGGCAGATAAAATATGAAGCTTTGGTAATATGGTAACCATACCTATC---AAAACAAATACAAAT------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------AA----ATGCAA
AATGAGGAATA-AATAATTCCACAGGGTAGAAACAGAGCCAAAATCAGCTCCACACCATGGACACAGAACCAA----CA
>Erinaceus_europaeus
TCATGGCAGATAAAATATGAAGCTTTGGTTATATGGTAGCCATACCTAGC---AA-ACAAAT-AAAAC------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------GT----ATGCAA
AATTAGGTAGA-AATAACTTTACCTAG-------------------------------TATACACAGAACATA----TA
>Homo_sapiens
TCATGGCAGATAAAATAGGAAGCTTTAGTAATATGGTAGCCATACCTATC---AA-ACAAATACAAAT------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------TC----ATGC-A
CATGAGGAACA-AATAATTTTGTAGGG-------------------------------TGGACACAGAACATG----TA



Dog260_LINE

>L1_CARN7_3END
--------------------------------------------------------------------------------
-------------ATGTAATGTACAGCATGGNGAATATAGTCAATAATATTGTANTAACNTTGTATGGTGACAGATGGTA
ACTAGACTTATTGTGG----TGATCACTTCACAATGTATACAAATGTCGAATCACTATGTTGTACACCTGAAACTAATAT
AACAT---TGTATGTCAATTATACTCAAATAAAAAAA-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------
>Canis_familiaris
TATGAATCTTTGCTGACTCTCAGAGATAG----AGACAAGAAGGAAGGTA-----AAGACAA---A-TAGAG----ACTA
GGGAATGGAT----------CTTAAAAATTTTCATCACAAGAAAAAAAAT--TTATAACTATGTATGGTGGTAGATGTTA
ATTAGACTTATTGTGG----TGATCAC-----------------------------ACGTTATATACCTAAAACTAATAT
GATGT---TATATGTCAAGTATACCTCAAT----------AAAAA-----AATAAA-TAT---TGAAGTAGAGAAATAT-
---GAGAGA-TGAGAAGGGGAGAG--------------------------------------------GAAGGGAGAGGA
----------TGGGAGGGGAGATA-GAATGAGAA----------------------------------------------
----------TCTGAGAGACACT-TTTGTG
>Felis_catus
TGTGAATATTTGCTGACTCTGAGAGAGAG----AGACAAGGAAGGAGGTA-----AAGACAC---A-AAGAG----ACAA
GGGAGTAGAT----------CTTAAAAGTTTTCATCACGAGAAAAAA---TCCTGTAACTGTGTGTGGTGATAGATGTTA
ACTAGACTTTTTGTGG----TGATCAT-----------------------------ATGTTATATACCTGAAACTAAT--
-ACGT---TACATGTGAAGTATATCTCAATAAA-------AAAAGAAAG-AAAAAA-TAT---TGAGATAGAGAAACAT-
---GAAAGA-TGAGAGGGAGAGAGGTTGATGAAAAGATAGAGAGAGTGGAGGTGAGAGGAGGAAAAAGGAGGGCAGGAGA
AGGGAGCAGAGGGAAGGGGAGAGA-CAATGAGAA----------------------------------------------
----------CCTGAGAGACACTTTTTGTG
>Manis_javanica
TATAAATATTTGCTAACTCACAGACAGACA-------AAAGAGGAAGGTA-----AAGAAAC---A-AAGAAAGAGATGA
GAAAGTAGAT----------CTTCAAAGTTCTCATCACAAAAAAAAAAGTT-CTGTAACTATATATGGTGATGGATGTTA
AGTAGATTTCTTGTGGTGATTGATCATTTTGCAATACATACAAATACCGAATCATTATATTGTACACCTGAAACTATTAT
AATGT---GTTATGTCAGTTATACTTCAATAA--------ACAAAAAAGAGACTTGAGAC---TGAAGT-----------
----AGAGA-TGAGAAGAAAAGAG------------------AGGGTGAGGTTGAGAGAG--------GAGAGCAGAGG-
----------ATGGAGGTGGGGAA-GAATGAGAA----------------------------------------------
----------CCTGAAAGGATGT--CTGTG
>Myotis_myotis
TATGAATATTTGCTAATTCTGAGAGAAATG---GGACATGTAGGGAGATA-----AAGACAT---A-AAGAA-----CAA
GAGAATAGTT----------CTT-AAAATTTCTATCACAAAAAAAG------TTGTAACTATGTATGGTGATGAATGTTA
ACTGGACTTACTGTGG----AGATCATTTCATAATATATACAAATAATGAATCATTACATTGT--ACCTGACTCTAATAT
GCTGCTAGTATATGTTAATTATACCTAA------------ACAAAAAAGAGACAAA-GAT---CGAGGTAAAGAAACAT-
---GAGAGA-TGAGAGG-AGAGAG----------------------TGAGGTCCAGAGAGGGAGCGTGGAGAGCAAAGAA
G---------AATAGGAGAAGAGA-GGATGGGAA----------------------------------------------
----------CCTGAGAGGCACTATTTGTG
>Rousettus_aegyptiacus
TATGAGTATTTGCTAATTCTAAGGATG------GAGCATGGTGGGGGGTAGAGCAAAGAAAC---A---GAG----ACAA
GAGAGTAAAT----------CTTAAAAGTTCTCATCACAAGAAAGAAGAATTCTGTAATTATGTATGTTAACAGATGTTA
ACTAGATTTATTGTGG----TGATCATTTCACAATATATACAAATATGGAATCATTACATTGTACACTTGAAACTAAT--
-ATGT---CATATGTCAATTATACGGCAATTAAA------AAAAGAGAGAAACAAA-GAC---AGAGGT-----------
----AGAGA-TGAGAGGAGAGGAA------------------------GAGCAGAGAGGAGAGGAGAGGAAGGAAGAGGA
-------------GGAGGGAGTGA-GAATGAGAA----------------------------------------------
----------CCCAAGAAACACTATTTGTG
>Sus_scrofa
TATGATTATTTGCTAATTCTAAGAAAGAGATACAGACAAAAGGGGAGATA-----AAGATAC---A-AAGAA------AG
AGACAAAGAT----------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------TAAAGTAGAGAAACAT-
---GAGAGA-TGAGAAAGGGAGAG------------------ACAATGAAAAGAAGAGGAAAAAAATCAAAGGGGGAAGA
AG--------GGGAAGAGAAGAGA-GAA--AGAA----------------------------------------------
----------CCTGAGAGACACTTGGTGTG
>Tursiops_truncatus
TATGAATATTTGCTACCTCTAAGAAAGAGATACAGACAAGAAGGGAGTTA-----AGTGTAC---A-AAGAA------AG
AGACAAAGAT----------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------TGAAGTAGAGAAACAT-
---GAGAGA-TGAAAAGGAGAGAG-------------------AAGTGGAAGGAAGAGAAGGAGAAAAAAGGAAAAGGGA
AGGG------AAGGAGGGAAGAGA-GAATGAGAA----------------------------------------------
----------CCTGAGAGACACT--GTGTG
>Equus_caballus
TATGAATATTTGCTAACTCTAAGAGAGAGAGAGAGACAAGGAGGGAGGTA-----AAGACAC---A-GAGAC------GG
AGACGAAGAT----------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------TGAGGT-----------
------AGA-CGAGAGGGAGAGAA--------------AGAGAGGATGAGGCTGAGAGAGGGAACGTGGAGGGGAGAGAA
GGAAA-----GGGAAGGGGAGGGA-GAATGAGAT----------------------------------------------
----------CCTGAGAGACACTTTTTATG
>Ceratotherium_simum
TGCGAGTACTTGCTAACTCTAAGAGAGTGAG--AGCCAAGGAGGGAGGTA-----AAGACAC---A-AAGAA------AG
AGACGTAGAT----------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------TGAAGC-----------
------AGA-TGAGAGGGAGGGGG--------------AGAGAGGGTGAGGTTGAGAGAGGGACAGTGGAGGGGACGGAA
GGAGA-----GTGGAAGGGAGAGA-GAATGAGAA----------------------------------------------
----------GCTGAGAGACACTTTTTGTG
>Condylura_cristata
TATGGACATTTGCTAACTCTACGA-------------------GGGTGTA-----AAGACAC---A-AAGAA--------
-----GGTCT----------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------CACGGA----CATCAT-
---GAGACA-TGAGAGCTGGGGCA--------------------------------------------------------
----------GTTGCAGGGAGAGA-GAGAGGGGA----------------------------------------------
----------CCGAAGTGATGCC--CTGTG
>Erinaceus_europaeus
TATGAACATTTGCTGACTCTGAAAA------------------GGTGGTC-----AAGACAC---ACAAGAA------AG
AGGCAAAGAT----------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------TGAGGT-----------
----AGAGAGTGGGAGGAAAGGGA--------------------------------------------------------
------------GGTGGGGAGAG--CAGGGAGAA----------------------------------------------
----------CCAGAGAGACA----TGGAG
>Homo_sapiens
TATGAATATTTGCTAACTCTAAGAGGGAGCCAGAAACAAGGAGGGAGGTA-----AATACCC---A-AAGAA-------A
AAAACAAGAG----------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------TGAGGTAGAGAAACATG
GAGGAGAGAGTGAATGGGAGAGAG------------------AGAGTGAGAGAAGGAGTGGAGGAGTGGGGGTGAGAGAG
AGAG------AGAGAGAGAAGAAATAGATGAGGGAAGACAAAAAGAAAGAGAGAAAGAGAGATGAGAGAGAGGAGAAGAG
AAAATGAGAACCTGAAAGACAGT--TTGTG



Dog261_LINE

>L1MA9_3END
-------------------------------------------------------------------------TTTTTCC
AGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATAT-ACGTATAC
ATTGTGAAATG--------------------------------------------------------------------
>Canis_familiaris
ATTGGTAGGTCTCCTTCTTCCCCAAATTAAGAATATGCTGATAGGAATGAAAA---TTATACGTTTT---TTTCCCTTTC
AGTTTTATTGAGCTATAATTGACATA-TAGC--TATATATATTTAAAGCATACAGCATAATGACTTGAGAGGAA------
--------------ATACAGCTTTT---AGAAGTCAGATTAGTTTGCAACTGAATCATCTA----AAAAGTGTATGGTA
>Felis_catus
ATTGGCAGGTCTCACTGTTCCCGAAATTAAGAATATGCTGATGGGAATGAAAA---TTATATGTTTT----TTCTTCTTC
AGTTCTATTGAGCTATAATTGACATA-CAGCATGATATATATTTAAGGTGTACAGCATAATGACTTGAGAAGAG------
--------------ATATAGCTTTT---AGAATTCAAATTTGTTTGCAACTGCATCATCTATGTCAAAAGTATACGGTA
>Manis_pentadactyla
ATGGGCCGATCTTGCTCTTCCCCAAAGAAAGACTATGCTGATGCGGATGAAAA---T-ATAGTATTT----TTTCCTTTC
AGTTTCATTAAGCTATACATGACATA-CAGAACTGTGTAAGTTTAAGGTGTACAGCAAAATTATTT-----GAA------
--------------TTACAGTCTTT---AGAATTCAGGTTAGTTTGCAACGGAACCACCTGCATCAAAAGCATACAGTA
>Equus_caballus
AGTGGCGGGTCTCACTCTTCCCCAAATTAAGAATACGCTGATGGGAATGAAAA---TAGTTTTTATT-----TTTCTTTC
ATTTTTAT-----TATAATTGACATT-CAGCTCTATATAAGTTTAAGTTGTACAGCATA---ACTTGAGAGGAA------
--------------TTATTGTTTTT---AGAATTCAGATTAGTTTGCAACTGAATTGCCTATATCAAAAGTATTCAGTA
>Ceratotherium_simum
AGTGGCAGGTCTCA-TCTTCCCCGAATTAAGAATATGCTGATGGGAATGAAAA---CTGAAGTTTTT-----TTCCTTTC
ATTTTTATTAAGCTATAATTGACATT-CAGCTCTATATAAGTTTAAGGTGCACAGCATAATGACTTGAGAGGAA------
--------------TTATTGTTTTT---AGAATAAGGATTTGTTTGCAACTGAATTGTCTATATCAAAAGTATTTAGTA
>Sus_scrofa
ATTGGCAGTTCACACTCTTCCCCAAATTAAGAATATGCTGATGAAAATGAAAA---TTATAGCCTTT-------------
--------------------------------------------------------------------------------
----------------------------AGAATTCAGGTTAGTTTG-AAATGGATCATCCCCATCGAAAGAATACAGTA
>Bos_taurus
ATTGGCAGTTCATGCAGTTCCCCAAATTAAGAATATGCCAACAAAAATAAAAA---TTACAGCCTTT-------------
--------------------------------------------------------------------------------
----------------------------AGAATGAAGATTAGTTTACAAATGAATCATTCATATCAAAAGAATACAGTA
>Myotis_myotis
TTA------------TCTTCCCCAAACTAAGAACACTTCAATGAGAATGAAAA---TTATAGTTTTG-------------
--------------------------------------------------------------------------------
----------------------------AAAATTCGTATTAGTTTGCAACTGAATTGTCCAAATAAAAAGTATACAGTA
>Rousettus_aegyptiacus
ATTGTTAGGCCATACTCTTCTCCATACTAAAAATACTCTAATGGAA-TGAAAA---TTATAGTTTTT-------------
--------------------------------------------------------------------------------
----------------------------AGAATTCATATTAGTTTGCAACTGAATTGTCCAAATAAAAAAGATATAGTA
>Condylura_cristata
ACTGGCAGCCCATGGTCTTCATTCAACTAAAA--------ATCGGAATGAAAA---TTAGAATCGTT-------------
--------------------------------------------------------------------------------
----------------------------GGAATTCAGATTTTCTGGCAAACGAATCAACAATATGAACGGCATGCAGTA
>Erinaceus_europaeus
CTGTGCAGGTTCTGCCATTCCACCA-----GAACACACTCATGGGAATGAAAA---TTACAGCTTTT-------------
--------------------------------------------------------------------------------
----------------------------A-AATCCAGATTAGTTTGCAACTAAATCATCCATGTCAAAAGCATCCCATC
>Homo_sapiens
ATGGACAGGTTATGTTCTTTCCCAAA---GGAATACGCTGATGGAAATGAGAA---TTATAGTTTTA-------------
--------------------------------------------------------------------------------
----------------------------ACAATTCATGTTAGTTTGCAACTGAATTGGCCACATCAAAAGTGTACAGTA



Dog264_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
-----------------ATCAAAAAGACAGAAGATAACAAGTGTTGGCGAGGATGTGGAGAAAAGGGAA---CCCTTGTA
CACTGTTGGTGGGAATGTAAATTGGTACAGCCATTATGG-AAAACAGTATGGAGGTTCCTC--AAAAAATTAAAAATAGA
ACTACCATATGATCCAGCAATCCCACTTCTGGG---TATATATCCA---AAGGAAATGAAAT-CAGTATCTCGAA-GAGA
TATCTGCACTC--CCATGTTCATTGCAGCATTATTCACAATAGCCAAGATATGGAANCAACCTAAGTGTCCATCGACGGA
TGAATGGATAAAGAAAATGTGGTAT---------------------------------ATATACACAATGGAATATTATT
CAGCCTT-AAAAAAGAAGGAAATCCTGCCATTTGTGACAACATGGATGAACCTGGAGGACATTATGCTAAGTGAAATAAG
CCAGGCACAGAAAGA---------CAAATACTGCATGATCTCACT--TATATGTGGAATCTAAA-------AAAGT----
---------------------CAAACTCATAGAAGC-AGAGAGTAGAATGGTGGTTGC----CAGGGGCTGGG-------
--GGGTGGGGGAAATGGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGATCTA
ATGT-----------------------ACAGCATGGTGACTATAGTTAATAATA-CTGTATTGTATACTTGAAATTTGCT
AAGAGAGTAGATCTTAAGTGTTCTCACCACACACAAAAA----AA-TGGTAACTATGTGAGGTGATGGATATGTTAATTA
GCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTA
TTTGTCAATTATACCTCAATAAAGCTGGAAAAA-----------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>Canis_familiaris
GGAGGTTCTTAACCTCCTAATAAACACCTGTGGAT--------GGAATGTCTGAGGTGGTCTTTT---AAAACAGTAAGA
AGAAAGAAATCGAA--------------GTTCAGTAACAAGTGTTGGTGAAGATGTGGAGAAATAGAA----CCCTTGTG
CATTGTGGGTGGGAAT------TGGTGCAGCCACTTTGG--GAGCAGTATGGACACTCCTCAAAAAAAATTTAAAAACCA
ACAACCATATGATCCAGCAAA---ACCTCTGAG---TACTTACTCATCTGAGGAAATGGAAA---CTAACTTGCA--GAA
TGCATGCACTC--TCATGTTCATTACAACATTATTTACAATAGTCAAGATATGGAAGTATCC-AAGTGTCCGTAGATGGA
TGACTAGATAAAG-AGATGTGGTGT---------------------------------CTACATGCAATGGAATATTACT
CAGCCAC-GAGCA--AAGGAAATCTTGCCATTTGTGACAACATGAATGGACGTTGAGGGCGTTCTGCTAAGTGAGATAAG
TCTGACAAAGAAACACTATGAGATCATAAACCGTATGATCTCACT--TATATGTGGAATCTTAA-------AAAA---AA
A-----------TTAAAAAGCCAAATTCATAGATAC-AGAAAACAGATGGATGGTTGCTTGTCAGAGGTGGGT-------
-TGGGAGACACAAGATGGGTGAAGGACGTCAAAAGGTACAAAGTTCCAATTAT--AAAATGAATAAGTCCTGGGGATATA
ATGTGGGGATATAATTATATCCTGGGGATATAATGGTGGCTATAATTAATGATA-CTT-ATTGTATATTTG-TATATGCT
AA--GAGTAGATCTTAAAAATTCTCATTACAAGAAAAAAACACACACTGTAACTAAATATGATGATGA--AGGTTAA---
GACTTACTGTGGTGATCATTTCACTAGGTACATCAATATTGAATCATTATATTGTATACCTGAGACTAATATAA-GGTCT
TATGTCATATATATATATATATATATATATATATATATATATATATAATCATGTTTACATATATATATATAATTAGATTG
GTGAAAGAAAAGAAGGAAGAAAGAAA-------GAAAGAAAGAAAGAAAGCAAACGAAC---ATGTCCCCAGCACTATGA
TACTGCGATG-TCTGGGCACTGGGCTGGGTG---CTTCCAGAAGCATCGGTTCCCACAG
>Felis_catus
GTAAGTGCT--------CACTAAGCATCTGTTGATGGAC----TGAATGTCCAAGGTGATCCTTC---AGAACAATAAAA
AGAAAGAAATTGAA--------------AGTCAGTGACAAGTATTGGGAAGGATGTGGAGAAAAGGGCA---CCTTCGTG
CCCTGTTGGCGGGAATGTAAATTGGTGCAGCCACTGTGG-AAAACAGAATGGACACTCCTT--AAAAAGTGAAAGCCATA
ATGAACACATGATCGAGCAAGTCCTCTCCTGGG------------------GGAAATGAAAA---GTAACTTGAA--AAA
TATATATCCTC--CCATGTTCATGACAACAATATTTCCAATAGTCAAGACATG----------AAGTGTCCACAGATGGA
TGAATAGATAAAGAAAATGTGGCAT---------------------------------ATCTACGCAATGGAATATTACT
CAGCCAT-AAAAA--AAGGAAACATTGCCATTTGGGACAACATGAATGGAACTTGAGGGCACAATGCTAAGTGAAATAAG
CCTGACAAAGAAAGA---------CAAATAGCATATGATCTCACTTGTATATGTAGAATCTTTA-------CAAATACAA
A-----------GCTAAACACCAAACTCATAGATAC-AGAGAACAGATTGGCGATTGCTTTTTAGAGGTGGGG-------
-TGGGAGACACAAAATGGGTGAGGGAGATCCAAAGGTACAAAGTTCCAGTTAT--AAAATAAATGAATCCTGGAGATGTC
ATGT-----------------------ACAACGCGGTCACCATAATGAGTAATA-CTATATTGTATATTTG-TATATGCT
AAGGGAGTAGATCTTAGAAGTTCTCATTACAAGAAAAAA----A--TGATAACTAAATACGATGATTA--ACGTGAACTG
GATTTATTGTGGTGAGCATTTCCCTGTGTGTACAAATATTCAGTCATTATGTTGTACACTTGAAACTAACATAG-AGTTT
TATGTTGGTTTTATGTATATGTATATATATATATATATACACACACACACATGTATACATATATACATATGTATGTATAT
--------ACATACATGTGTGTACAT-------ATACGTGTATACATATGTATANNNNN---NNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>Manis_pentadactyla
GTAGGTTCT--------TAATAAATATCTGTTGACTGAT----TGAATGTCCAAGGTGGTCCTTT-----AAGAGTAAAA
AGAAGGAAACTAAA-----------------AGTAAACAAGTGTTGGTGAGGATGTGGAGAAAAAAGTA---TCCCTAGG
CACTGTCGGTGGGAATGTAAAGTGCTGCAGCCACCATGGAAAAACAATATGGAACATTCTC--AAGAAATTAAAAATAGA
ACTGCCATATGATACAGCCATTCCACTTCTGGGTTTTTTTTTTTCA---AGGGAAACAAAAA-CACTGTCTCAAA-AAAA
TATATGCATTCATTCATGTTCATTGCAGCATTATTTAAAATAGCCTAGACATGGAAACAACCTAGGTGTCCATGGATAGG
TGAATGGATAAAGAAAATATAGTAT-------------------------------ACGTATGTGCAGGGGAATATTATT
TGGCCAT-AGAAAAGAAGGAAA-CTTGCCATTTGTGATGACATAGATGGATGTTGAGGGCATTATGCTAAGTAAAATAAG
TCAGATAGAGAAAGA---------CAAATACAGTGTGATCTCACT--TACATGTGGAACCTAAAACAAATAATTTTAAAA
A----------TCTTAAAAACCAAACTCATAAATACTAGAGAACAGACTGGTGGTTGC----TTGGAGTGGGAGGTGAAG
CAGGGATGGGTGAAATGGGTGAAGGGAGTCAAAACGTACAAACTTCCAGTTAT--AAAATAA----GTCATGGGCATGTA
ATGT-----------------------ATAGCATAGTGACTGTAGTTGATAAAA-TTGAAT-CAATAGTTG-CACA--CT
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNN-------NNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>Equus_caballus
GTAGGTTCT--------CAATAAGTATCTGTTGGCTGAT----TAAGTTTCTGAAGTGGTCCTTT---AAAAGAGTAAAA
AGAAGGAAACTAAA--------------------TAACAAGAGTTCATGAGGATGTGGAGAGAAGGGAA---CCCTCGTA
CACCGCTGATGGGAATGTACATTGGTGCAGCCAGTATGG-AAAAGAGTATGGAGGTTCCTC--AAGAAATTAAAG-TAAA
ACTACCACATTATCCAGAAGTTCCACTTCTGGA---AATTTATTCA---AAGGAAATGAAAA-CACTAACTCAAA-AAGA
TATATGCATTC--CCATGTTCACTGCAGCATTATTTACAATAGCTGAGACATGGAAGCAACGTAAGTACCCATAGATGGA
TGAATGGATAAAGAAAATATGACATATATAAATATGACATACACACACGTGCACGCACACACACACAATGGAATATTATT
CAGCCAT-AAAAAATAAGGAGATCTTGCCATTTGAGACAACATAGATGGATCTTGAAGGCATTATGTTAAATGAAATAAG
TGAGACAGAGAAAGG---------GAAATACCATATGATCTCACT--TATATGTGAAATCTAAAACAAACCAAAAAAAAA
T-----------TTTTTTAATGAAACTCACAGATAA-AGAGAACAGATTGGTGGTTGC----CAGAAGTGAGGAGTG---
-GAGGGTGGGCGAAATAGGTGAAGGTGGTCAAAAGATACAAACTTCCAGTTAT--AAAATAA----GTCCTGGGGATGTA
ATGT-----------------------ACAGAATGCTGACTATAGATGATAACATTTGCATTGTATATTTAAAATTTGCT
AAGATAGTTGATCTTAAAAACTCTCATCACAAGAAAAGA----GATTTGTAACTAAGTGCGGTGATAG--ATGTTAACTA
GACTTATTGTGGTGATCGTTTTGCAATATATACAAATATCTAATCATTACGTTGTATGCCTGAAACTAACATAA-TGTTA
TATGTCAATTATATCTCAATAAAAATATGTATATTAAAAAA---------------------------------------
------------AATTAAGTTGATTG-------GTTAAAAAAAGAAGAAAGAAACTAAC---ATGAATCCAACACTA---
-----CGGCC-TCTGGGCTCTGGGCTCGTG----CTTCA-----------GCCCCACAG
>Ceratotherium_simum
GTAGGTTCT--------CAACAAATATCTGCTGACTGAT----TGAATTTCTGAGGTGATCCTTG---AAAAG-------
--AAGGAAACCAAA--------------ACTAAATACCAAGTGCTGGTGAGCATGTGGAGAAAAGGGAA---CTCTTGTT
CACTGTTGGTGGTAATGTAAATCAGTGCAGCTGCTATGG-AAAACAGTATGGAGGTTCCTC--AAAAAATTAAAA-TAGA
GCTACCACAGGATCTAGCAATCGCATTTCTTAG---TGTTTATATG---AAGGAAATGAAAA-CACTAGCTCAAA-AAAA
TATATACACTC--CCATGTTCGTTGCAGCATTATTGACAATAGCCAAGATATGGAAACAACCTAGATGTCCATAGATGGA
TGA----ATAAAGAAGATGTGATAT---------------------------------GTATATACAATGGAATATTATT
TAGCTGT--------AAAAAGATCTGGCCATTTGCAACAACATGGATGGAACTTGAGGGCATTATGCTGAGTGAAATAAG
CCAGATAGAGAAAGA----------CAGTGCTATATGATTTCATT--TATATGTGGAAGATAAA---AAACAAAATACCA
AAACATTTTTTTTTTTAAAACTGAACTCAGAGATAC-AAAGAACAGATTGGTGGTTGC----CAGAGGTGGCA-------
-TGGGG--------ATGGGGGAAGGGGGTCAAAAGGTACAAATTTCCACTTAT--AAAATAAAT--GTCATGCGGATGTA
ATGT-----------------------ACAGCATAGTGACTATAGATAATAATA-TTGTATTGTATATTTAAAAGTTGCT
AATGGAATAGATCTTAAAAGTTCTCATCCCAAGAAAAAA----AATTTGTAGCTATGTGTGGTGATGG--ATGATAACTA
GACTTACTGTGATGATTATTTTGCAATATATACAAATATCTAATCATTAAGTTATATACCTGAAACTAATATAA-TGTTA
TATGTCAATTATACCACAATAAAAATATATATGTTAAAAAA---------------------------------------
-----------ATAGGTTTATTAGTT-------AAAAACAAAAAAAGAACGAAAGTAAC---ATGTCTCCAGCACTG---
-----TGGTG-TCTAGTCACTGGGCTTGGTG---CTTCA-----------GTCCCATAG
>Desmodus_rotundus
GTAGGTTCT--------CAAGAAACGTCTGTTAGCTGAT----TGAATGTCTGATGTAGTACTTT---GAACGAGTAGAA
GAAAGAAA-CTAAA--------------ACTAAGTGACAAGTGCTGGCGAGGATGCAGAGAAAAAAGAA---CACTTGTG
CACCGTTGGTGGGAATGTAAATTGGCGCAGCCACTGTGG-AAAACGGTATGGAGTTTCCTC--AAAAGGTCAAAAATAGA
ATTACCATAGGATCTAACAATTTCACTTCTGGG---TATTTATCTG---AAGGAAACAAAAAGCACTCATTCGAA-AAAA
TGTCTGCACCC--TTCTGCTCTTTGCAGCGTTGCCTATTACAGCCACAGCGTGGAAACAATCTGAATGTCCACGGANNNN
NNNNNNNNNNNNNNNNNNNN--------------------------------------NNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNN-----------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNN-----------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNN-----------------------------------------------------------------
--------NNNNNNNNNNNNNNNNNN-------NNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNN---
-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>Pteropus_vampyrus
GTAGGTTCT--------CCATAAATATCTTTTGATTGATTAAATAAATGTCTGATGCGGTCCTTT---GAAAGAGTAAAA
AGAAGGAAACTAAA--------------ACTGAATGGCAAGCATTGTCAAGGATTTGGAGAAAAGAGAACAGCCCTTATG
CATTGTTGGTAAGAATGCGAATTGGTACAGCCACTATGG-AAAACAGTATGAAGATTCCCC--AAAAGATTAAAAATAGA
ACCACCATATGATCCAGCAATTCTATTTCTGGG---TATTTATCTG---TAGAAAACAAAAA-CACTAACTTGAATAAAA
TATCTGCACTT--CCACATTCATT-CGCTATTATTTATAATAGCTAAGACATGGAAACAACCTAAG----------AGGA
TGAATGGATAAAGAAAATGT--------------------------------------ATATATACGATGGAATATTATT
CAGCCATAAAAAAAGAAAAAAATCTTGCCATTCATAACAACATGGATGGACATTGAGGGCATTGTGCTAAGCAAAATAAG
TC----AAAGAAAGA-----------CATACCATATGATTTGATT--TATTTGTTAAATGAAAA-------AAAAAAAAA
G---------------------AAAACCATAGATAC-ACAGAATACATTGGTGGTTGC----CAGAGGC-AGGAGCG---
-AGGGTAGGGCAAAATGGGTGAAAGTGGTCAAAAGATAGCAACTTCCAGTTTT--AAAATAA------CTAAGACATGCG
ATAC-----------------------ACAACACAGTGACTGTAGTTAATAATA-CTGCCTTGCATATTTTAAAGTTGCT
AAGAGAGTAGATCTTAAAATTTCTCATCATAAGAAAAAA----AA--TGTGACAAAGTGTGGTGCTGG--ATGTTAACTG
GACTTACTGTGGTGATCGTTTTGCAATATATATGAATCTTGAATCATTATGTGGTAC-TCTGAAACTAATGTAA-CGTTA
CATGTCGATTTTTTA-----------------------------------------------------------------
--------AATTAGGTAATTGGGTTT-------AAAAAAATAAAAGGAC--------AC---ATGTATCCTGCACTA---
-----CAATG-TCTGGGTGCTGGGTGAGGTA---CATCACATAT--TCCGTCCCCATAG
>Sus_scrofa
GTAGGTTCT--------CAGTAAATATCTGTTGAC--------TGAATATCGGAGGTGGTCCTTG---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------AAAAGAGTAAAAAGGCGGAAACTAGC---ATGT--CCAGCAGGG---
-----CGACG-TCTGGGCATCAGGGTAGGG----CTTTCCATAT--TCAGTCTCCACCG
>Bos_taurus
GCAGGTTCT--------CAGTAAGTATCTGTTGACTGAC----TGAATGTCTGAGGTGGTAAAAA---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------GAAGGGAAGAGTAAAAAGAAGGGAATTGAC---ATAT--CCAGCACAA---
-----TGATG-TCTGGGCACCCGGCTAGGG----CTTTATGTAT--TCAGTCCCCACAG
>Condylura_cristata
GTA-GTTCT--------TCATAGATAGCTGTTGCCTGAT----TGAAT-TCCAAGATAGTTCTTT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------GAAAGCGGAAAAAGAAGGAAACTAAT---ATGTA-CCAGCATTA---
-----TGAAG-TCTGGGTGGTGGGCTGGGTACATCTTCACGTAT--TCAGTTCCCACAG
>Erinaceus_europaeus
GT---TTCT-----------TGAGTATCTGTTGACTAAC----TGAACGTCTGAGGCATCCATTT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------AAAAGATAAAAAGAAGGAAATCAAC---TGGCACCCAGCACTA---
-----CAGTA-TCTGGGCACAGAA-TAGGTAATTTTTCATGTAT--TAAGTCCCCACAG
>Homo_sapiens
GTACATTCT--------CAATAGATATCCGCTGACTGAT----TTAATGTCTGAGGGGATTCCTT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------AAAAGAGTAAAAGGAAGGAAACTAAC---ATGTAT-CAGCACTA---
-----CAATGACCTGAACCCTGGGCAAGGTG---CTTCACATAT--TTGGTCCCTACAG



Dog283_LINE

>L1_CARN7_3END
--------------------------------------------------------------------------------
-------------------TTTTTTTATTTGAG-TATAATTGACATACAATGTTATATTAGTTTCAGGTGTACAACATAG
TGATTCGACATTTGTATACATTGTGAAGTGATCACCACAATAAGTCTAGTT-ACCATCTGTCACCATACAANGTTANTAC
AATATTATTGACTATATTCNCCATGCTG--TACATTACATCCCCATGACTT-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------
>Canis_familiaris
TTCATGGAAAAGCTGC-TATG----TGTAAGATATTTAATGGGCATGCAAGAAAGATAA---AAGA-----------ATT
ACTAAGGCTTGTCCTT----TTTTT--ATTGAGGCACAACTGGCATGTAACATTATATTCGTTTCAGGTATACAACATAA
TGATTCAATATTTGTATATATTGCAAAATGATCATCACAGTAGGTCTAGTTAAACATCCATCACCACATATAGTTA-CAG
AATTTTTT--------TTCCTTGTGATGACTACTTTT-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-AAGATCTATCTAAAGCTTATCCTT---GGCCTC-AAAAAAGTGTTTGTGATCTAAGGAAAAA-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------CAAAGGTAAAGAAATG
>Felis_catus
TTCCCTGTGCAACCAC-TATG----TGTAAGA---CTAACGGACATGCTAGAAAGATAA---AAGA-----------ATT
ACTGAGGCTTGTCCTT----TCTTT--ATTGAGGCATAATTGACCTGTAACATTATATCAGTTTCAAGTGTACAACTTGA
TCATTCAATATTTGTATATATTGCAAAATGATCACTC---TAAGTTTAGTT-AACATCCACCACCGTATACAGTTA-CAG
AATTTTTT--------TCCCTTGTGGTGACAACTTTT-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-AAGATCTATCTAAAGCTTACCCTC---AACTTC-AAAAGAGTGTTTATGATCTAGGGAAAAC-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------AAATGTAAAGAAATG
>Manis_pentadactyla
TTCACTAAGCAGCTTT-TATGTACATGTAAGA---CTATTGGGCCTGCTGGAAAGACAA---AATA-----------ATT
TCTAAGACT---CCTT----TTTTTCTTTTTTGGTATAACTGACATATAACATTATGTTACTTTCATGTGTACAGCACAA
TGATTTGATATTTGTATATATTTTGAAATGTTCACCACAATAAGTCTAGTT-AACATCTGTCACCATACATAGGTA-TAG
AATTTTTT--------CTCT-TGTGATGACAACTTTT-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-AGGATCTATGTAAGGCTTGTCCTT---GACCTCAAAAAAAGTGTTTGTGATCTAGAGAAAAA-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------AAATGTAAAAGAATA
>Sus_scrofa
TTCACTGAGCAACTGCTTATG----TGTAAGA---CTAATGGGCATGCTAGAAAGGTAA----AGA-----------ATT
ACTAAGGCTTTTCCTT----TTTTTAAATTGAGGTACAGTGGACATAT-------TATTAGTTTCAGGTGTACCGCATAA
TGATATGATATT-GTATATATCATGAAATGATCACCGCAATTAGTCTTGTT-AACATCCATTACCACACATAGTTA-CAG
AATTTTTT--------TTCT-CATGGTGACAACTTTT-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-AAGATCTATCTGAGACTTACCCTT---GACCCC--AGAGAGTGTTTGTGATCTAGAGAAAACAATATAAAGAAAATTGG
CAAAGGAGCCTGCTCTGGCACAAAGGGATCAGTGGCATCTTGGGAGGGCTGGGACACAGGTTTGATCCCTAGCCTGGCAC
AGTCCGTGGGTTAAGAATCCGGCACTGCTGCAGCTGCAGCTCAGGCTGCAACTGTAGCTTGGATCTGATCCCCGGTCCAG
GAACTCTATATGCTGCAGGGTGGCCAAACAAAGTGAAAGGAAATG
>Bos_taurus
TTCACTGATCTGC--A-TATG----TGTAAGA---CTAATGGGCATGCTAGAAAGATTA---AAGAATTATTACAGAATT
ACTAAGTCTTCTCCTT----TTTTAAAATTGAGGTATAATTGACATATACCATT------------GACAGACACCATAA
TGATTTGATTTTGG--TATGTTATAAAATGATCACCACAGTAAGTCTAGTT-AGCATTCAATACCACATGTAGTTA-CAG
ATTTTTTT--------TTCC-TATGATGACAGCTTTT-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-AAAATCTATCTAAGGCTTATCCTT---GACCCC-AAAAGAGCGTTTGTGACCTAGAGAAAAC-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------AAAGGTAAAGAAATG
>Equus_caballus
TTCACCGAGCAGCTGC-TGTG----TGTAAGA---CAAGTGGGCAAACTGGAATGATAA---AAGA-----------GTC
AATAAGACTTATCCTT----TTTTTTTATTGACGTATAATTGACATGTGACA-TATATTAGTTTCAGGTGTGCAACATAA
TGATTCAATATTTGCATATATTGCAAAATGATCACCACAATAAGTCTAGTT-AACGTCTATCACCATACATAGTTA-AAG
AATTTCTT--------CCCT-CATGGTGACAACTTTT-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-AAGATCTGTCTAAGGCTTATCCTT---GACCTC-AAAAAAGTGTTTGTGATCCAGAGAAAAC-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------GAATGTAAAGACATA
>Ceratotherium_simum
TTCACTGAGGAGCTGC-TATG----TGTAAGA---CTAATGGGCATGCTGGAATGATAA---AAGA-----------GTT
GCAAAGGCTTATCCAT----TATTTTTATTGAGGTATAAGTGACATACAACATTACATTAGTTTCAGGTGTACAACATAA
TGATTTGATATTTGTGTATATTGCAGAATGATCACCACAATAAGTCTAGTT-AACGTTCGTCATCATATATAACTA-TAG
AATTTTTTTT------TTCTTTGTGATGACAACTTTTTTTTTTCCTGAAGAAGATTAGCCCTGAGCTAATATCTGTGCCA
GTCTTCCTCTACTTTGTATGTGAGTTTCTGCCACAGCGTGGCTGACGAGTGGTGTAGGTCCGTGCCTGGGATCCGAACCC
ATGAACCCGGGCCGCTGAAGCGGAACGCGCCAAACGTAACCCCTGCGCCGTGGGGCCAGCCCTGTGATGACAGCTTTT--
-AAGATCTATTTAAGGCTTATTCTT---GACCTG--AAAAAGTGTCTGTGATCTAGAGAAAAC-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------AAATGTAAAGAAATA
>Myotis_myotis
TTCATCAAGCAACTGC-TATG----CAT-AGA---CTAATGAGTATGCTGCAAAGATAA---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-AATA-ATTTCTAACACTTATCCTT---GACCTT-AAAATAGTGTTTGTAATCTAGAGAAAAT-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------AAACATAAAGAAATG
>Rousettus_aegyptiacus
TTCACTGAGCAGCTGC-TATG----CATAAGA---CTAATGGGTGTGCTGGAAAGATAA---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-AAGAAAATTCTAAGTCTTATCTTT---GACCTC--AAAAAGTGTTTGTGATCTAGAGAAAAC-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------CGATGGAAAGAAATG
>Condylura_cristata
TTAAACGAGTGGCTGT-TGTA----TGTAAGA---CTAGTGGGCATACTGGGAAGATAA---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-AAGC-ATTAATGAATCTTATCCTT---GACCTC-ATAAAATTGCCTGTGATCTAGAAAAAAC-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------AAATAGGAAGAAAGG
>Erinaceus_europaeus
TTGACT-AGCAGCTGC-TTTG----TGTAACA---GTAATGGGCTTGCTGGAAAGATAA---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-AAGA-ATTACTTAGGCTTAACCTT---GACCTC-ATAAAAGTGTTTGTGATCTAGAGAAAAC-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------AAATGTAAAAACAAA
>Homo_sapiens
TTCACTGAGCAGCTGC-TATG----TGGAAAA---CTAATGG-CATGCTGGAAAGAAAA---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-GAATTTTTCCTAAGGCTTGTCCTT---GACCTCAAAAAAAGCATATGTGATCTAGAGAAGAC-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------AAATTTAAAGAAATG



Dog284_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------TGGT
ATATATACACAATGGAATATTATTCAGCCTTAAAAAAGAAGGAAATCCTGCCATTTGTGACAACATGGATGAACCTGGAG
GACATTATGCTAAGTGAAA-TAAGCCAGGCACAGAAAGACAAATACTGCATGATCTCACTTATATGTGGAATCTAAAAAA
GT------------------------C-----------------------AAACTCATAGAAGCAGA-----GAGTAGAA
------------TGGTGGTTGCCAGGGGCTGGGG-----------GGTGGGGGAAATG----GGGAGATGTTGGTCAAAG
GGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGTACAGCATGGTGACTATAGTTAATAATACTG
TATTGTATACTTGAAATTTGCTAAGA---------GAGTAGATCTTAAGTGTTCTCACCACACACA---AAAAAATGGTA
ACTATGTGAGGTGATGGATATGTTAATTAGCTTGA---TTGTGGTAATCATTTCACAATGTATACGTATATCAAAACA--
TCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAA-----TAAAGCTGGAAAAA--------
--------------------------------------------------------------------------------
-------
>Canis_familiaris
GTTTGAGAAATGAATATGAGTGAATGAA-----TGTTTTATTT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TCTTGGTCT---AAGAGAGGTAGGCTAT-------
----ATATTTAATGGAATGTTATTCAGTTATAAGATAAAATGAAATCTTGCCATTTGTGACAA-----------CTCGAG
GGCATTATGCCAAGAATAG-TAAGTCAG----AGAAAGGCAACTGTCCTATAATCTCACTTATATGTAGAATCTAAAAAA
AG------AAAAAACAAATGAGAAAAC-----------------------AAGATCATAGATACAGA-----GAACAGAT
-------------------------------GGGTTGGGGTAGAAGGTGGGCAGAT------GAGTGAAGA---TTAAAA
GGTACAAACTTCCAGTTAT--AAAATAAATAATTCCTAGGGGTGTAATATATAGCATGGTAAGTATAGCTAATA---TTG
TCTTGTATATTTGAAATTTGCTAAGA---------GAGTAGGTCTTAAAAGTTTTCACCATTAGAAAA-AAAAATCTGTA
TCTGTGTGTAGTAAGGG--ATGTTAACTACACTTAACTATGTGGTGATGATTTCACAATGTATACAAATATGGAATCA--
TTATGTTTTGCATCTGAAGCTAATATAA-CATTATATGTCAATTATATCTACACAG--AAAAAGTGAA-------AAGAG
AGGTAGGCCTT---CTAGTGGATA--ATCCACTGGATGTATG-----TCTTTTCCTTCTGTCCTACAGGACA--------
TTTCTGT
>Felis_catus
GTTTGAGAAATAAATGTGAGTGAATGAATAAA-TGTTTTACTT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TCTTGGTTT---AAGAGAGGTAGGCTAT-------
----ATATTTAATGGAATATTATTCAGCCAAAAAATAGAATGAAATCTTGCCATTTGTGATAATTTGGATGAACCTTGAG
GGCATTATGCTATGTGTAA-TATATAAGTCAGAGAAAAACACCTGTCATGTAATCTCACTTATATGTAGAATCTAAAAAA
AA----AAAAAAAAAAAACAAACAAAC-----------------------AAGATCCTGGAT-CAGATCTTGGAACAGAT
CATGTAACAGATAGGTAGTTGCTAGAGGCAGGGGTGGGGGTGGAAGGTGGACAGAAT-----GCGTGAAGAGGGTTAAAA
GGTACAAACTTCCACTTAT--AAAATAAATAATTCCTATGGGTGTAATGTACAGAATGGTAACTATAGTTAATAATACTG
TATTATTTATTTGAAAGTCGCCAAGA---------GAGTGGGTCTTAAAAGTTTTCATCTTAAGAAAG-AAAATTCTGTA
ACTGTATATGGTGTTGG--ATGTTAACTACATTTA---CTATGGTGATCATTTCATAATGTATACAAATATGGAATCATT
TTATGTTGTGCACCTGAAACTAATAT----GTTATATGCCAATTATATCTACATTTTAAAAAAGTGGA-------AAAAG
----AGGCTTT---TGAGTTGAGA--ATGTAGTAGATATATG--------------TCTGTCCTACACAACA--------
TTTCTGT
>Phataginus_tricuspis
GTTTGAGAAATAA--ATGAGCGAATGAA-----TGTTCTATTT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TCTTGGTTT---AAGGGAGGTAGCTTAT-------
----ATATTCAGTGGAATGTTATTCAGCCATGTAAAAGAATGAAATATTGCCATTTGCAACAACCTGGATGGACCTTGAG
GGTGTTGTGCCAAGTGAAA-TAAGACA-------AAAAACAAATACCTTATGACCTCACT--TCTGTGGAATTTAAAAAA
AA------AAAGGAAAGAATACTAAAC-----------AGAC--AAAACCAAGCTCCTGGATGCAGA-----GGACAGGT
TG-----------------------------GGGTGGGGATGGGAGGTGGCACAAT------GAGTGAAGGGG-CTCAAA
AATACAAGCTTCCAGTTAT--AAAATAAG----TCCTGGGCATGTAATGTGCAGCATGGTGACTATAGTTAATAATACTG
CACTGTATATTTGAGAGTTGCTTAGG---------GAGTAGGTCTTAAAAGGTTTCATAAAAAG-AAA-ATAATTCTGTA
ACAATATGTTGTGATGG--GTCTTAGCAAGATTCA------TTGTGATCTTTTCATGGTATCCACAAATACCAA---A--
TTATATTGTACTCCTGAAACTAATATAA----TGTGTGTCAATTATATC-----------------GA-------GAGAG
AGATAGGCTTT---CAAATTGAGA--ATCTGGAAGATACAGG-----TCTTTTCATCCCATCCTACACA----------T
TTTTTGC
>Sus_scrofa
GTTTGAGAAATGA--ATGAGTGAATGCATAGAATATTTTATTT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TCTTGGTTT---AAGAGAGGTATGCTAT-------
----ATAGTCAATGGAACATTATTCAGCCATAAAAAATAATGAAACCATGCCATTTGCAACAACATGGATGGACTTTGAT
CATGTTATGCTAA-------TAGGTCAAAC--GGAAAGACAGGTACC-TATGATCTCACTTATATGTGGACTCTTAAATA
AA-----------------CAAAAACC-----------------------AAGCTCATGGACACAGA-----AAACATAC
------------TGGTGGTTGTCAGAAACAAGGGTGAGGGTGGGAGGTGGGTGAAAT-----GGGCTAAGGGAGTTAAAA
AGTAGAAACTTGGAGTTAT--AAAATAAGTAATCTATGGGGATGTCATGTACAACATGGTGA--ATAGTTAATAATACTA
TATTGTATATTTGGAAGTTTATAA-----------GAGTAGATTCTAAAAGTTTTCA-CACATTAAA--ATATTTGTGTA
ACAATAC-TGGTGGTGA--ATGTTAACTAGACTTA---CTGTGGTGATTATATCTCAATATACAGAAATATTGAACCA--
TTATTTTATGGTTC-------AATATAA-CATTTTACATCAGACAATC----------TAAAAAAAAA-------AAGAG
GGCTAGGCTTT---CAAGTTGAGA--ATCCAGTAGATGTAGG-----TCTTTGCATCCTGTCCTGCCCAGCATTTTTTTT
TTTTTGT
>Bos_taurus
GTTTGAGAAATGA--AAGAATGGTAGAATGAA-TGTTGTATTT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TCTTGGCTT---AACAGAGGTAGGTGGT-------
----ATATTCAATGGAATATTATTCAGCCGTAAGAAGGAAGGAAGCCTCGCCGTTTATAACAATATGGATGGACTGTGAG
GGTATTATGTTCAGTAACGCTAAGTCAG----AGAAAGACAGATA-CATATACCCTCACTTGTGTGTGGAATCTAAACAA
AC---------------------AAGG-----------------------AAGCTCATGGACACA-------GGACAGAT
------------TGGAGGTTGCCAGAGGCAAGGATATGGGTGAG-AGTGGATGAAGTGTGCTGGGGGAGGGGGTTTACAA
AGTATCAGCTTGTAGTTAG--AAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNN-----------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------NNNNNNNNNN-------NNNNN
NNNNNNNNNNN---NNNNNNNNNN--NNNNNNNNNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNN
>Equus_caballus
GTTTGAGGAATGA--ATGAA-------------TGTTTTCTTT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TCTTGGTGT---AAGAAAGGTAGGCTTT-------
----GTATTCAATGGAATATCATTCAGCCATAAAAAAGAATGAAGTCTTGCTATTTGTGACAGTGTGGATGGACCTTGAG
GGTATTATGCTAAGTGAAA-TAAGTCAGACAGAGAAAGACAAATACTATATGATCTCACTTATGTGTAGAATCTAAAAAA
AC--CCAACAAAACAAAACAAAAAAACCCCAAATAAACAAAAAACCCCT-GAGCTCGTAGATAGAAC-----AAACAGAT
------------TGGTGGTTGCTAGAGGCAAGGGTGGA-------ATTGGGCGAAAT-----GGGTGAAGGGAGTTAAAA
AGTACAAAATTCCAGCTAT--AAAATAAATAAGTGCTGGGGGTATAATGTACA-CATGGTGACTATAGTTACTAATACTG
TATTGTATATTTGAAAGTTGCTGAGA---------GAGTAGATCTTAAAAGTTTTCAGCACAAGAAAGTAAAATTTTGTA
ACAGTGTATGGTGATGG--ATGTTAAC-AGACTTA---TTGTGGTGCTCATTTCACGGTATCTAAGAGTCTCGCATCA--
CTGTGTTGTTTACCTGAAGCTATTGTAA-TGCTGTCTGTCAGTTAGACCTC---------AATGAAAA-------TAGAG
AGGTGGGCTTT---TGAGTTGAGA--ATCCTGTAGATACAGG-----TCTTTCCATGCTGTCCTACACG----------T
TGTTTGT
>Ceratotherium_simum
GTTTGAGAAAAGA--ATGAATGAA---------TGCTTTGTTT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TCTCGGTTT---AAGAGAGGTAGGCTGT-------
----GTATTCAATGGAATATCATTCAGCCATAAAAAAGAATGAAATCTTGCTATTCGTGACAACACGGATGGACCCTGAA
GGCATCATGCTAAGTGAAA-TAAGTCAGACAGAGAAAGACAAGTACCATGTGATCTTGCTTATATGTGGAATCTAAAAAA
AAAACCAACAAAACCAAAACAAAAAACCCCACGTACACAAAAAAACCCCCGAGCTCATAGGTACAAA-----GAACAGAC
--------AGATTGGTGGTTACCAGAGGCAGGGGTGGG-------GTTGGGTGAAAT-----GGAAGAAGGAAGTTAAAA
AGTACAAACTTCCAGCTAT--AAAATAAATAAGTCCTGGGGGTGTAATGTACAGC--------TATAGTTAATAATTCTG
TATTGTATATTTGAAAGTTGCTAAGAGAGTGGATTGAGTAGATCTTAAAAGTTTTCATCACAAGAAAATAAAATTTTGTA
ACAGTGTATGGTAATGG--ATGTTAACCAGACTTA---TTGTGGTGATCCTTGTGCAGTATATACAAATCTCGTGTCG--
TCATGTTGTATGCCTGAAACTAATATAA-TGCTATGTGTCAATTAAACCTC-------AATAAAGAAA-------TGGAG
AAGTAGGCTCT---CGAGTTGAGA--ATCCAGTAGATGTAGG-----TCTTTTCATCCTGTCCTACACA----------T
TTTTTGT
>Myotis_myotis
GTTTGAGAAAGGA--ATGAGTGAGTGAA-----TGTTTTATTT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TCTTGGTTA--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TAGAG
AGGTAGACTTT---TGAGTTAAGAATATCTAGTAAATACAGGGTTGTTGTTTTTATCCAGTCCTACATAGCA-----TTT
TTTTTGT
>Rousettus_aegyptiacus
GTTTGAGAAGTGC--ATGAGTGAACGAATGAA-TCTTTTATTT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TCTTGGTTT--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------AAGAG
AGGTAGGCTTT---TAAGTTGAGA--ATCCAGTAGATGTAGA----TTTTTTTCATGCTGTCCTACACAACA-------C
TTTCAGT
>Condylura_cristata
GTTTGATAATGAA--------------------TATTTCAATT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TCTTTATTT--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------AACAA
AGGTAGATTTT---CAAGTTGGGA--AT-CAGTAGGTGTAGT--------------CCTTTTGTATACTACA--------
TCTTTGT
>Uropsilus_gracilis
GTTTG----ATGA---TGAATGAGTGAATACT-TAATT--TTT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TTTTGATTT--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------AAGAA
AGGTAGA-CTT---CAAGTTGAGA--ATCTGATGGATGTAA---------------CCTTTTCTACACTGCA--------
TTCTTGT
>Homo_sapiens
GTTTGAGAAATGA--ATGAA-------------TGTTTTCTTTATTTATTTATTTCATTTTGTTTTTAAGAGATGGGGTC
TTACTCTGTTGCCCAGGCTGGAACTGCGGTAGTGCAATCATAGCTCACTGCAGCCTTGACCTCCTGGGCTCAACCAATCC
TCCAGCCTCAGCCTCCCGAGTAGCTGAGACTACAGGTGTGCACCACCACACCCAGCTAATTTTTTCATTTTTTGTAGAGA
CAGACTCTTGCTATGTTGCGCAGGCTGGTCTCAAACTCCTGGGCTTAAGGGATCCTCCTACCTTGTCCTCCTAAAGTGCT
GGTATTACAGGTGTGAGTCACTGCACTCAACTGAACGTTTTATTTTCTTAGTTT--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------ATTAG
AAGTAGGCTTT---AGAATTGATA--ATCCAGTAGGTGTAGG-----TTTTTTCATTCTGTCCTACGCAATG-------T
TTTTTGT



Dog286_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------TTTTTCCAG----CTTTATTGAGGTATAATTGACAAA----------TAAAAATT
GTATATATTTAAGGTGTACAACGTGATGTTTTGATATACGT---ATACATTGTGAAATGATTACCACA------------
-----------------------------------------------------------
>Canis_familiaris
ATCCTTTCCCCAAACTC--TTGGCTG------------------------------------------------------
--------------------------------------------------TTGTTGG-----------TTTT-ACTTTC-
--ATGTGAATTTT---TAAGTTTATTTTTTCCAG----TCTTACTGACATATTATCAACCTAC-----------ATCAGT
GTGTAAGTTTAAGGTATAGAGCATAATGGTTTGACTTCCGTTTTGTATAATGTGAAATGT-----------ATATGGATA
CT---GATGAATCTTTTAATGAAATGTTTCCTTCCTACTTCTCTCAGCAGGTGCTTCCC
>Felis_catus
GTTCTTTCTCAAAACTCT-TTGGCTA------------------------------------------------------
--------------------------------------------------TTCTTGGCC-------CCTTTT-ACTT---
---TATGAATTTT---TAAATTTATTTCTTCCAG----TTTCATTGAGATATCATCAATGGAC------AGGCAATGGAC
ATGTAAGTTTAAGGTGTACAGCATAATGGCTTGACTTCC-----GTATATTGTGAAATGT-----------ATATGAATA
TT---GACGAGTCTTTTAAGGCAATGCCTCCTTCCTACCTCTCTCAGCAGGTGCTCCCC
>Manis_pentadactyla
GTTCTTTCTCAAAATCCTTTTCGTTG------------------------------------------------------
--------------------------------------------------TTCTTGGTC-------CTTGTTAACTTTC-
--ATATGAATTTT---TTAATTTATTTTTTTCCAGTTTTTTTATTGAGACGTAATTGGCATGC-----------ATTACT
GTATTAGTTTAAGGTATATAGCATACTGGTCTGGCATA-------TATACTGTGAAATGT-----------ATGTGAATT
TT---GATTAATC---TAATGAGATGCTTCCTTCCGACCTCTTTCGGCAGGTGCTTTTC
>Sus_scrofa
ATTCTTTCTTAAAATTCTGTTGGCTATCCCCTCCTTTTTTTTGGCATGTGGAAATTCCTGGGCCAGTGACTCAAGCCAAT
ACAGTGACAATGCTGGGTCTCCTTAACCCACTGCACTACAGTATAACTACTTCTTGGCCTTTTTTTTTTTTTAACTTTC-
--ATATGAATTA--------AAAATTTTCCCTAG--------TTTGAAATATAATTGTCATGTATCACTTATATATCATG
GTATAAGTTTAAGGTATACAGCATGATGTTTTGACTGA------ATATATTGTGAAATGC-----------ACATG-ATA
TT---GA-TAGACTTTTAATAAAATGCTTCCTTCCTACTTCTTTCAGCAGGTTTGTTTC
>Bos_taurus
AAACTTTCTCAAAATTCTTTTGGTTT------------------------------------------------------
--------------------------------------------------TTCTTGGCC-------TTTTTC-GGCTTT-
--ATATGATTTA--------CATTTTTCCCCTAG----TTTTACTGAGATATAATTATTATAC-----------ATCACT
GTATATGTTTAAGGTGTACAACATAATGATTTGGCTTA------ATATGTCATGAGGTGT-----------GTATG-ATT
TT---GGTTGACCTTTTAATGAAATGCTTTCTTCCTACCTCTTGCAGCAGGTACATTTC
>Myotis_myotis
ATTCTATCTCAAAATTCTGTTGGCTA------------------------------------------------------
--------------------------------------------------TTCTCATAC-------CTTTTT-ACTTTT-
--ATATGAATTTT---TAAATATATTTTTACCAG----TTTTATTGATATATAATTGACATAC-----------ATCATT
GTATAAGTTTAAGGCACAGAGCATAATGGTTTAACTTAC-----ATCTGTTGTGAAATGT-----------ATATGAATT
TT---GATTAATCTGTTAATGAAATGTTTCCTTTCTACCTCTTTCAATAGGTACTTTTC
>Rousettus_aegyptiacus
ATTCTTTCTCAAAATTCTTTTGGCTA------------------------------------------------------
--------------------------------------------------CTCTCAGCC-------CTTTTT-ATTTTT-
--ATATGAATTTT---TAAATTCACTTTTCTCAG----TTTTATTGAGATATAATTGCCATAC-----------ATAACT
GTATACGTTTAAGGTATATGGCATCATGATTTAATTC-------ATATGTTGTAAAATTT-----------ACATAAATT
TA---GAAGAATCTATTAATAAAATGCTTTTTTCCTGTCTCTTTCAGCAGGTACTTTTC
>Equus_caballus
GTTATTTCTCAAAATTCTTTTCGCTA------------------------------------------------------
--------------------------------------------------TTCTTGGCC-------CCTTTT-ATTTTC-
--------------------------------------------------------------------------------
-----------------------------------------------------------------------ATATGACCT
TT---GATTAATCTTTTAATGAAACACCTTTTTCCCACCTCTTTCAGTAGGTACTTTTC
>Ceratotherium_simum
GTTCTTTCTCAAAATTCTTCTGGCTA------------------------------------------------------
--------------------------------------------------CTCTTGGCC-------CTTTTC-ATTTTC-
--------------------------------------------------------------------------------
-----------------------------------------------------------------------GTATGAAAT
TT---GATTAATCTTTTAATGAAATACTTTTTTCCTACCTCCTTCAACAGGTACTTCTC
>Condylura_cristata
ATTCTTCTTCAAAATTATTTTGCCTA------------------------------------------------------
--------------------------------------------------TTCTTGTCC-------TTTTTA-GCTTTC-
--------------------------------------------------------------------------------
-----------------------------------------------------------------------ATAGGAATT
TT---GA------TTGTAGCAACA------CTTCCTACATCTTTCAGTGGGTACTGTTC
>Solenodon_paradoxus
AGTATTTCTTAAAATTCTTTGGACTT------------------------------------------------------
--------------------------------------------------CATGTATCC-------TTTTTA-ATTTTC-
--------------------------------------------------------------------------------
-----------------------------------------------------------------------ATATGAATC
TT---GACTACTATTTTAATGAAATACTTCCTCCCTACCTCTTTCAGCAGGTACTTTTC
>Homo_sapiens
AGTCTTTTTCAAATTTCTTTGGACTG------------------------------------------------------
--------------------------------------------------TTCTTGGCC---------CTTTGGCTTTC-
--------------------------------------------------------------------------------
-----------------------------------------------------------------------AAATGAATT
TT---GATTAATCTTTTAATAAAATGCTTCCCTCCTACCTCATTCGACACATACTTCTC



Dog288_LINE

>L1_CARN7_3END
------------------------------------------------------------------------AATAATAT
TGTATAACNTTGTATGGTGACAGATGGTAACT-AGACTTATTGTGGTGATCACTTC------------------ACAATG
TATACAAATGTCGAATCACTATGTTGTACACCTGAAACTAATATAACATTGTATGTCAATTATACTCAAATAAAAAAA--
--------------------------------------------------------------------------------
---------------------------------------
>Canis_familiaris
AGATGT-CCCGGTGCTGAGAGCTGAGATCAGAGCTTCTGCAGGGGACATTT-----AAAAAAATCTCTA----------T
TTTGTATCTGTGTGAGATGGTGGATG-----T-ACACTTAGTGTGGTAATCATTTC------------------ACCACA
CATATGA--GCCAAATC---ATACCATCCGTCTTAAGCTTACCCAGCGCTGTATGTCAATTATATCACAGTAAGATTGCG
GGGAGGGGA----------AGAAG-------CCTGTA---GGTCCT-------------CAGACTCT--TAGGAGGGCAT
TTTGGTTCCCGCT---------AATAGTTTAGTGAGGGC
>Felis_catus
AGACGC-CCCTGCGTGGAGATCGGAGCCC----CCATCACAGAGGAGATTT-T-----AAGAAACTCTA----------T
TTTGTGTCTGTATGAGGCGACGGATGCTAATT-AAACTTATTGTGGCAAACGTTTC------------------ACAACA
AACGTAA--GTCACATCATGATACTGGCCACCTTAAACTTACACAGCGCTGTACGTCAATTATATCGCAATAAAACTGGG
GAAATGAAAAAGAATT---AAGGA-------TCTCGA---GTTCCT-------------GAGATTCT--TGGGAAAACAT
TTGGGTTCACGTTTCCTGC--CAATAGTTTGGCGAAGGC
>Manis_javanica
AGAGGC-CCCTGTGTGGAGATCAGACTGC----CTCCTGCAAAAGAGATTT-T----TTAAATTGT-TA----------T
TTTGCATCTATATGAGGTGATGGACT-----TGAAACTTACTGTGGTAATCATTGC------------------ACAATA
TATGTAA--GTTAAATCATTATGGTGTACACCTTGGTTTATCCAAGTGCTGTATGTCAATTGTATCTCAATAAAACTGGG
GAAAGC---AGGGAA----AGGAA-------TCTCTA---GGTCCC-------------TAGGTTCT--TCACAAAGCAT
TTTGGCTCACGTTTCCAGC--TAACGTTTCAGTGTAGGC
>Sus_scrofa
AAGTGT-CCCTGTGTGGAGATCAGAGGGC----CT-CTGCAAAGGAGATTT-T-----AAGAATCTCTA----------T
TTTATATCTACATTAGATGACAGA---TAACT-AAACTTACTGTGGTAATCATTTATATAGGGCTGTGTGTGTGTGTGTG
TGTGTGT--GTGAAATCATTATGCTGCATACCTTAAACTTACAGAGTGCAGT-----------ATCTCAATAAAGCTGGG
AAT--CAAAAGAAA-----AAGAA-------CCTCTA---GGTCTT--------------------------AAAAGCAT
TTTGGTTCACGTTTTCTCCTACAGCAGTTTACTGAGAGC
>Tursiops_truncatus
AGACGC-CCCTGCGTGGAGATCAGAGGGC----CT-CTGCAAAGGAGATTT-T-----ACAAATCTCTG----------T
TTTGTATCTCCATGAGATGATGGATGTTAACT-AAACTTACTGTGGTCATCATTTA------------------CGTGTG
TATATGT--GTCAAATCATCACGCGGCACACCTTAAACTTACACAGTGCAGT-----------ATCTCAATAAAACCAGG
AAA--CAAAAGAGA-----AAGAA-------TCTCTG---GGTCCT------------GCAGATTTTATTAGGAAAGCAT
TTGGGTTCACATTTCCCGC--CAACATTTCAGTGAGGGC
>Equus_caballus
AGACGC-CCGTGCGTGGAGAGCAGAGCGT----CTACTGCAAAGGCGATTT-G-----GAGAGTCTCCG----------T
TTTGCATCTCTGTGAGATGATGGGTGCTGAGT-A-----ATTGTGGTCATCATTTC------------------ACGAT-
TATGTAA--GTCAAATCATGACTCTGTACACCTTAAACGTATACAGTGCCGTATGCCACTTACATCTCGATGAAACTGGG
GA---GAAAAGGAA-----AAGAA-------TCTCTA---GGTCCT-------------TAGGCTTTT-TAGGAAAGCAT
TTTGGTTCACGTGCCCGGC--TCACATTTCAGCGAAGAC
>Ceratotherium_simum
AAAGACTCCCCACGTGGAGATGAGAGCAT----CTGCTGCAAAGGCGATTT-T-------GAGTCTCTG----------T
TTTGTATCTGTATGAGGCCATGGGTGTTAACT-A-----ATTGTGGTCATCATTTC------------------ACAAT-
TATATAA--GTTAAATCGTCATGCTGTACACCTTAAACTTATACAGTGCTGTAGGTCAATTATATCTCAATAAAACTGGG
GGA--GAAAAGGAA-----AAGAA-------TCTCTA---CGTCCT-------------TAGGCTTT--TAGGAAAGCGT
TTTGGTTTACGTTTCTGGC--TGACAGTTCAGTGAAGGC
>Myotis_myotis
GGATGC-CCCTGAGTAAGGATCAAGGCAC----CTGTTGCAAAG---ATTTGT---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AAGAA-------TCTCTA---GGTCCTTTCCTAAAAGTCGTCGGCTTT--TCAGGAAGCAT
TT----------------------AAGTTCTGCAAAGGC
>Rousettus_aegyptiacus
AGGCG------GCATGGATATCGAGGTGC----CTGCTGCAAAG---ATTT-T---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AAGAA-------TCCCTA---GGTCCTTTCCTAAAAGTCCTAGACTTT--TAGGGAATTGT
TT----------------------CAGTTCAGAGAAGGC
>Condylura_cristata
AGAAGC----TGCGTGGAAGGCCACGCAC----TACCAGCAAAGAA-ATTT-T---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AAGAACGTTGCTTCTGCA---GGTCGT-------------TAGGCTT---TAAAAAGGTGC
TCCGGTGGACAT---------------------GTAGGC
>Sorex_araneus
TCATAT-TCTTCAGAGGAGACCAGAGCAC----CCTATGA-------TTTT-T---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AAGGCCTCTGATTCTCCC---AGCCTT--------------GGGCTTT--CAGGAAAACAT
TTTGTTTCA-GTTCCTGGC--CAGCAGGGCCGGACAGAC
>Homo_sapiens
AGACACCCCTGCTGTGGAGATCAGAGCGC----CTACTGAAAAGGAGATTT-T---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AGGGATATTG-TCCTCTA---GGTCCT-------------TGAGCTTTTATAGGAAAGCAT
TTTAATTCACGGTTCAGGC--CACCAGTTCAGGGAAGGC



Dog289_LINE

>L1MA9_
--------------------------------------------------------------------------------
----CTCGAAGAGATATCTGCACTCCCATGTTCATTGCAGCATTATTCACA--ATAGCCAAGATATGGAAWCAACCTAAG
TG-----TCCATCGACGGATGAATGGATAAAGAAAA---TGTGGT------------------------------ATATA
--------------------------TACACAATGGAATATTATTCAGCCT-----------------------------
--------TAAAAAAGAA---------------------------GGAAATCCTGCCATTTGTGACAACATGGATGAACC
TGGAGGACATTA-TGCTAAGTGAAATAAGCCAG----GCACAGAAAGACAAATACTG-CATGATCTCACTTATATGTGGA
ATCTAA---AAAAGTCA--------AACTCATAGAAGCAGAGAGTAGAATGGTGGTTGCCAGGGGCTGG-----GGGGTG
GGGGAAATGGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGTACA
GCATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCACCACA
CACAAAAAA-----------------------------------ATGGTAACTATGTGAGGTGATGGATATGTTAATTAG
CTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACA-----------------------
--------------------------------------------------------------------------------
-----------------------------------------
>Canis_familiaris
TTTTT-----AGAACAAAATCACCACAGTGGCG-----TACTTTGTTTATTTC---AAATAAGATGTACATTTCTCACTG
---ACTTGAGAAGCTATCTACACCCTCATGTTCATGGAGGCACTACTTATAGTATAGGCAAGGCATGGCAACAGCCTAAG
TG-----TCCATAGACCGATGAATAAATGAAGAAGT---TGTCAC------------------------------ACATA
--------------------------CTCACTGAGGGATGTTATTCAGCCA-----------------------------
--------TAAAAAAATGA--------------------------GGAAATCCTGCCATTTGCAATAACATAGATGGACC
TTGGAGGCATTA-TGCTACGTGAAATAACTCAG--------AGAAAGACAAATACTA-TATGATCTTACTTATATGTGGA
ATATTC---AAATAACAACAACA--AATTTATAGGAAAAGAAATCAGACTTATGGTTACCAGAGGCAGGAGGTGGGGGAA
GAAGGAATCAGAAGAAAGTGATCAAAAGGTATAAACTTCCAGTTAT--GAGACCAGTAAGTACTAGAGCTATATTGTACA
ACATGATGACTATAGCT-ACACTGCTGTATAA----TAGGGAA---ATTAAGAGATTAAAACCTAGGAGTTCTCATCATA
AGAAGAAAA-------TCATGTTTTTATTCTTTCTTTTATTTTCAGTGTGTCTATATGTGAAAATGG--GTATCAGCTAA
GCTGATTGTCGTAATCATTTTACAA--CATATGTAGATCAAACCGTCATGCTGGATGCCTTAAACTTATACAGTGATGTA
TGTCAAATATTTCTCAGGAAAATTAG---GGGGGAAAA-----------GATTTTCTGACAT---GAAGACT-TTGATTA
CTGGGT----TTTGTTTAGCACAA-ATTTCTGTCCATTTGA
>Felis_catus
TTTTT-----AGAACAGAATCACTACATTTGCATACTTTATATT-------TC---AAACAAGATTTGCATTTCTCACTA
---ACTTGAGAAGATATCTGTACCCCCGTATTCATGGCAGCATTATTTACA--ATAGCCAAGGCATAGCGACAACCTAAG
TG-----TCCATAGATGGATGAATGAATAAAGAAGT---TATCACACACACACACACACACAC----ACACACACACACA
--------------------------CACACACAGGAATATTATTCAGCCA-----------------------------
--------TAAAAAATGA---------------------------GGAAATTCTACCATTTGCAGTAACACAGATGGACC
TTGAAGGTATTA-TGCTAAGTGAAATAATTCAG--------AGAAAGACAAATACCA-TATGATCTCACTTACATGTGGA
ATCTTA---AAAAACAAAAAATCT-ACTTCATAGAAAAAGAGATCAGACTTATGGTTACCGGAGGCAGGAGGTAAGGGAA
GTGGGAATTGGAAGAAAGTGGTCAAAAGGTACAAACTTCCAGTTAT--AAGACCAGTAAGAATGAGGGCTGCAATGTACA
---TTATGACTAGAGCTGACACTGCTGTATAA----CAGGAAA---ATTAAGAGAGTAAATCATACGAGTTCTCATCACA
AGAAGAAAA------------TTATTTATTCTTCTTTTATTTTTATTGTATTCATATGAGAAAATGG--ATATTAGCCGA
ACCTATTGGGGTAATCATTTTGCAA--TATATGTAGATCAAATCATCATGCTATATGCCTTAAACTT----AGGGATGTA
GGTCATTTATTTCTCAGTACAA-TGG---GAGGGAATAGA-------TTGTGTTTCTGGCAT---GAAGCCTCTTGGTTA
CTGGG------TTGTTTTGCACCA-ATTTCTGTCCATTTGA
>Manis_pentadactyla
TTTCTT----AGAATGACATCACTATATTTGCATCAGTTATGTTGATTATTTC---AAGCAAGTTTTGTGTTTCTAATTA
---ACTCAACAAGATAGCTACACCTCCACATTCAATGCAGCATTATTTACA--ATAGCCAAGACATGGAAATAGCCTAAG
TG-----TTCACTGATGGATGAATGGATAAAGAAGT---TGTGGAGAATATATATACACATAC----ACATACATACACA
------CACTCACGTGTGCGTGCAAACACACACTGGAATATTATTCAGCCA-----------------------------
--------CAAAGAAGAA---------------------------TAAAATCTTG---TTTGTGATAACATTGATGGACT
TTGACAGCATTA-TGCTAAGTGAGATAAGCCAG--------GGAAAGACAAAAACCATTATGATCTCATTTATATGTGGA
ATTTAAAACAAAAACAAAAAACTCAAATGCATAGAGAAAGAGACCAGTTTTGTATTTACTGGAGGCAAG-GATTGGGGAA
GGGGAAAATGGAGGAG------CAAAAGGTACAAACTTAGAATCAT--AAGATAAATAAGTACTAGGGGTGTAATGCACA
CCATGATGACTATAGGTAATAGTGCTGTGTGATGTATAGGAAAGTTACTAAGAGAGTAAATCCTAAGAGTTCTCATCATG
AGGAGAAAATAATTTTTCCCCTTATTCTTTTCTTCTTTCTGTTTATTGTATGTAAATGAGAAGATGG--ATGTTAGCTGA
GCCTACTGTGGCAGTCATCTCATGA--TACATGTAAGCCAAAGCATCATGCTATATGCCCTGAACTTATACAGTGGCATA
TATTGATTATTTCTCAAGAAAATTGG---GAAGAAAATGAAAAATATTTGTGTTTCTGACAT---AAAGACTCTTGGTTA
CTGAGGT----TTTTTTTGCATAA-ATATCTGTCCATCTGA
>Sus_scrofa
TTTTTTTTTCAGATTGAAATCACTATATTTGCACCAGTTATGTTGATTTTTTT----AATACAATTTG------------
-------------ATATCTGCACCC----------AGTGTCTTTATTTCCA--ATATCCAAGACATGGAAATAATCAAAG
TGCCTATCCTATCTGTGGATGAATTGATAAAGAAGT---TGTGGT----------------------------ATATGTA
--------------------------TATACAATATAATATTATTCAGCCACACACACACACACACACACACACATATGC
ACACTTACCAAAAAACAGAAACAAACAAACAAACAAAAAACAATGAGGAATCCTGTCGTTTGCAACAATGTGGATAAACC
TTGAGGGCATTA-TGCTATGTGAAGTGAGTCAG----GCAATCAAAGACAAATACTG-TGTGATC----TTACACGTGGA
TTGTGA---AAAAAAAAAAAAGC--AATTAGTAG----AGAGATCAGATTTGTGGTTACCAGAAGTGGGGTGTGGGGTAA
GGTGGAATTGGAGGAAGGTCATAAAAAAGTACAAAATTCCAGTTAT--AAGATACCTAAGTCCTAGGAAACTAATAAACA
ATGTGATGATTATAGTTAACAC--------------TAGGAAACCTGTTTAGAGAGTAATTCCTAAGAGTTCTCAGCACA
TCAGGAAAT-CTTTTTTTGTTCCCTTTTTTCTTCTTTTCTTTTTATTATATCTATTTTAAAAGATGG--ATGTTAGCTGA
AGCCAGTGTGGTAATCATTTCATAA--TACATGTAAATTGGACCACAACACTGTTTACCTGAAACTTATACAACAGTGTA
TGTCAGTCATTTCTCAAAA----GTG---GAAAAGG-----------TTGTGTTTGTAATAT---AAAGACTCGTGGTTA
CTGGGTT--------TTTACATAATAAATCTGTCCATTTGA
>Bos_taurus
TTTTTG----AGAACAAAATCACTATATTTGTACCAGTTATACTGAATATTTT---GAA--AAATTAGTGTTTTGTATGA
---ACTTAAAAAGATATCTGCACCC----------AGAAGCATTATTTCCA--AGAGCCAAGACCTGGAGATAACCTC--
-------CCCATTGATGAATGAATTGATAAAGAAGT---TGTGGT----------------------------ATATGTG
--------------------------TACACAATAGAATATTACTCAGCCA-----------------------------
-----TTTTAAAAAAAGGAAATCCT--------------------AGGAACCCTATTGTTTGCAACAACATGGATAAAAT
TTGAGGGCATTATTGCTATCTGAAAT--GTCAG----ACAATGAAAAACCAATACAG-TATGATCTCATTCACTCATGGA
ATCTGA---AAC-------------AATTCATAGAAAAAGAGATCAGACTTGTAGTAACCAGAAGTGG------------
------------------TTGTTGAAAGGTACAAGCTTCCAGTTAC--AAGATACATAACTCCTAGCAGTGTGATGAACA
GTATAGTGATTATAGTTAATGCTGCTGGATGATATATAGGAAAGCTGTTAAA----------CTAGGAGTTATAATCACA
AGGAAGAAA-AATGTTTTCCTTTTTTCTTCTTTCTTTTCTTTTTATTGTATCTATTTGAGAAAATGG--ATGTTAGTTGA
AGCTTTTGTGGTAATCATTTCATAA--TATATGTAAAGCAAACTGTCATGC-------------CTTATACAGTGGTGTA
TATCAGTTATTTCTCAAAA----GTG---GAAAAAAAAAA-------AA------CTGACGT---AAAGACTCTTGGTTC
CTGGG------TATTTTTGTACAGTATACCTTTCTATTTGA
>Equus_caballus_
TTGTTT----AGAACAGAATCACCATATTTGCATCAGTTATGTTGGTTATTTT---GAACGATATTTGTGTTTCTCACTA
---ACTCGAAAAGATATCTGCACCC-CATGTTCATAGCAGCAGCATTTACA--AAAGCCAAGACATGGAAATAACCTAAG
AG-----TCCATCAAGGGAGGAATGGATAGCTAAGTATATATAATGAATAAGAATATATATATACAATGGAATATATATC
ACAACTTCTTTATCTATTCCATTGTATATACAGTGGAATATTATTCAGCCA-----------------------------
--------TAAAAAAG-----------------------------GAAATTCTTACCATTTGCAATAACATGGATGGGCT
TTTAAGGAGTTA-CGCTAGGTGAAATAAGTCAGACACACAAAGAAAGACAAATATTG-TATGATCTCACTTAAATGTGGA
ATCTAA---AAAAAAAAA-------ACCTCAAAGAAAAAGAGATCAGCCTTGTGGTTACCAGAGGTGGGGGATGGAAAGA
GGGGGAATTGGAGGAAGGTATTCAAAAGGTACAAACTTCCACTTAT--AAGATAAATAAGTACTAGGAGTGTAATGTACA
A-ATGATGACCATGGCTAACACTGCTGTATGACATATAGGAAAGTTGTTAAGAG-GTAAATCCTAAGAGTTCTCATCACA
AAGAGAAAA-ATTTTATTCCTTTATTC-TCTCTACTTTCTTTTTATTCTAACTATATGAGAA-ATGG--ATGTTAACTGA
ACTTATTATGGTAATCATTTCACCA--TATACGTAAATCAAAACATCATGCTATATGCCTTAAATGTATACAGTGATATA
TGTCAATTATTTCTCAACAAAA-CTG---GGGAAAAAAGA-------TTGCTTTTCTGACAT---A----CTCTTGGTTA
CTGGGTT---CTTGTTTTGCACAA-ATATCTGTCTGTCTGA
>Ceratotherium_simum
TTTTTT----AGAACAAAATCACTATATTTGCATTAGTTATGTTGATTATTTT---GAATGAGATTTGTGCTTCTCACTA
---ACTCGAAAAGATATCTGCACCCCCATATTCATAGCAGCATTATTTGCA--ATAGTCAACACATGGAAACAACCTAAG
GG-----TCCATCAATGGATGAACGAATAAAGAAGT---TGTGATATATATATATATATATTCCACTGTGTGTTTATATA
------TACT----------------CACACAGTGGCATATTATTCAGCCA-----------------------------
--------TAAAAAAACAG--------------------------GGAAATCCTACCATTTGCAACAACAGGCATTGGCC
TCAAAGGTATTA-TGCTAAGTGAAATATGTTAG----ACAAAGAAAGACAAATACTG-TATGATCTCACTTACATGTGTA
ATCTAA---AAAAAAAAAAAA----AACTCA----AAAAGAGATCAGTCTTGTGGTTACCAGAGGTGGGGGGTAGAAAGA
GGGGGAATTAGAGGAAGGTGATCAAGAGGTACAAACTTCCAGTTGT--AAGATAAATAAGTACTAGGGATGTAATGTACA
AT-TGACGACTATAGCTAATGCTGCTGTATGATATTTAGCAAA---GTTAAGAGAGTAAATCCTAAGAGTTCTCATCACA
AAGAGAAAAATATTTGTTTCTTTATTCTTTTCTACTTTCTTTTTATTCTATCTATATGAGAAGATGG--ATGTTAGCTGA
ACTTATTATGGTAATCATTTCACAA--TATATGTAAATCAAACCATCATGCTGCATGCCTTAAACTTATACAGTGATGTA
TGTCAATTATTTCTCAACAAAA-------------AAAGA-------TTGTGTTTCTGACAT---AAAGACTCTTGGTTA
CTAGGTT---TTCGTTTTGCACAA-ATATCTGTCCGTCTGA
>Myotis_lucifugus
TTTTT-----TGAGCACAATCACTACATTTGCATCCGTTCTATTGATTATTTT---GAACAAGATTTGTGTTTCTGATGT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------AAAGACTCCTGGTTA
CTGGGTT---TTTGTTTCACACAC-ACATCTGGCCATCTGA
>Rousettus_aegyptiacus
TTTTTC----AGAGCAAAATGACTACATTTGTATCAGTTTTATTGATTATTTT---GAACAAGATTTATGTTTCTGACAT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------AAAGA--CTTGGTTA
CTGGGTT---TATGCTTTGAACAA-ATATCTGTCTGTCTCA
>Condylura_cristata
TGTTTT----AGAATAAGATCACTG-ATTTGCATCAGTTATATTGGTTATGTT---GAACACAATTTGTGTTTCTGACGT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------GAAGACTCATGATGC
CTAC------CTTGTTTTGTGCAA-ATACCTGTCCATGCAA
>Sorex_araneus
ATTTTT----AGAATAAAATCACAACATTTGCCTCCATTATATTGATTTTTTC---TAATAAGA--TTTTTTTCTTTATT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------AA-GAAACATGGTTA
TTGTCTTTTGTTTGTTTTGTACAA-ATCACTGGCCATTTGA
>Homo_sapiens
CCTTTG----AGAACAAAATTATTATATTTGCAACAATTATATTGAGTATTCT---GAATAAGACTTGTGTTTCTGACAT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------AAGGGCTCTTGGTTG
CTGGGT----TTTACTTTGCACAC-ATATTTGCCTGTCAGA



Dog291_LINE

>L1_CARN7_3END
--------------------------------------------------------------------------------
---------------------GGTGATCACTTCACAATGTATACAAATGTCGAATCACT-ATGTTGTACACCTGAAACTA
ATATAACATTGTATGTC---AATTATACTCAAATAAAAAAA---------------------------------------
-----------------------------------------------------------------------------
>Canis_familiaris
TGTAGGCATCAAGGGACCATT-----------------------TAGGGCAGAACGTATTCATGTATCT------ACTTT
---GGAAACATTACTCCA------------TTTGTAGTATATACAGATATCAAATCATT-GTGTTGTAAACCTGAAATTA
ATGTTATA------------------------------AAAA----------------AT------------------AA
AAACA---CTCTA---GTAATAGTGGAATA-GAAAATGAGTTGTGGTGTTAGAGATAGTTAGAAGTTATTTTAATAA
>Felis_catus
TGTAGGGATCAAGGGACCATT-----------------------AAGGGCAGAAGGTACTCGTATTTCC------ATTTT
---AGAAACATT---CCA------------TTCACAGTATATACGGGTATCAAATCATT-GTGTTGTACACCTGAATCTA
ATGTA---------------------------------AAAA----------------AT------------------AA
AAACA---TTCCG---GTAACAGTGGAATG-GAAAATTAGTTGTGGCACTAGAGATAGTCAGAAGTTATTTTTATAA
>Manis_pentadactyla
TATAAGCATTGTGGAACTGTT-----------------------TAGGGCAGAATGTATTCACTTTAC-------ATTTT
---AGAAACATTATTCCA------------TTTGTAGTATATACAAATACTGAATCGTTAATGTTGTGTGCCTAAAACTA
ATG--------TATGTC---AATTTTACCTCAA-----AAAA-----------AATCCAGAAAGATAGG---------TA
GATTA---TTCCA---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>Sus_scrofa
TTCAGGCATTGAGGGATCACT-----------------------CAGGGCAGAAGGCTTTCCCATTTCC------ATCTT
---AGAAACGTTATTTTG-----------CTTAACAATATATATAAATATCAAATCCTC-ATGTTATACACCTGAAACTA
ATATAATGTTTTATGTC---AGTTATAGCTCAA-----AAAA-------------TCCATAAAAAA--------------
GAGCATCATTCCA---GTAACACACGAAAT-AAAAATGGGTTG-------AGAGATAGCTAGAGGTTCTTTTAGTAA
>Tursiops_truncatus
TGCAGGCATTGAGGGATCATT-----------------------CAGGGCAGAATGTTTTCACATTTCT------GCTTT
---AGAAACATTATTTCA------------TTCACAATATATACAAATATCAAATCGTT-ATGTTATACACCTGAAACTA
ATA--------TATGTC---AGCTATACCTAAA-----AAAAAAAACCAAAACCCTAAATAAAAAAGAAAGAAAA---AG
AAACATTATTCCA---GTAACAGAGGAAGGCAAAAATGGGTTGTGGTACTAGAGATAGTTAGAAATTATTTTAATAA
>Equus_caballus
TGTAGACATTGAGGAACCATT-----------------------CAGGGCAGAGTGTACTCACATTTCC------ATTTT
---AGAAACATTATTCCA------------TTTGCAATATATACAAATATTGAGTCATT-ATGTTGTACACCTGCAACTA
ATATCATCTTGTATGTC---AATTATACCTCAATAAAAAAAA--------TCCCTTATATAAAAAAG------GA---AG
AAACATTATTCCA---ATAACAGTAGAATA-AAAAATGAGTTGTGGCACTAGAGATAGTCATAACTTATTTTAATAA
>Tapirus_indicus
TGTAGACATTGGAGGACCATT-----------------------CAGGGCAGAATGTATTCATATTTCC------ATTTT
---AGAAACATTATTCCA------------TTTGCAATATATACAAATATTGTGTCATT-ATTTTGTACACCTGCAACTA
ATATAATGTTGTATGTCATGAGTTATACCTCAATTTTTAAAA-------AGTCCCTTAAAAAAAAAAAGAAAGGA---AG
AAACATTACTTCA---GTAACAATGGAATA-AAAAATGGGTTGTGGTACTAGAGATAGTCAGAAGTTATTTCAATAG
>Desmodus_rotundus
TGTAGATATTGAGGG-CCATTAAAATGGGAATAATAAATATATTCAGGGCAGGATATATTTATATTCCC------ATTTT
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AG
AAACA-----TTA---GTAAC--TGGCATA-GAAAAGGGGTTGTGGTACTAGAGAAAG----AACTTATTTTAAAAA
>Rousettus_aegyptiacus
TGTAGGTATTGA-GAACCATT-----------------------CAGGGCAGAATGTATTCACATTTTCC-----ATTTT
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AG
AAACATTACTCCA---GTAACAGTGGAATG-GAAAGGGGGTTGTAGTACTAGAGATAGTCAGAAGTCATTTTAATAA
>Condylura_cristata
TGTTGACATAGAAGGTCCATT-----------------------CAGAG-GGAATATACTCACATTGTTTACATTAATGT
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AG
AAAA--CATTCTA---GTAACAGTGGAATG-GAAAATGCACTGTGCCA--AGAGACAG--------------AGTAA
>Sorex_araneus
TGTAGGCATTCACAGAAC--------------------------CAAGGCAGGGTATATTCACATTTCT------ATTTT
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AG
AAACATCATTTTA---GTAGCAGTGAAATG-GAAAGTAGTCTGTGGT-CTAGAGATAGTCAAAAGTTATTTTAATAA
>Homo_sapiens
TGTAGGCAGCAAGGGACCATT-----------------------CAGGGCAGAATGTATTCACATTTAT------ATTTT
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AG
AAA--TTACTTAA---GTAGCAGTGGAATG-AAAAGCAGTGTGTGATAATAGAAATAGTCAGAAGATATTTC-ATAA



Dog292_LINE

>L1_CARN7_3END
--------------------------------------------------------------------------------
---------------------------------------------TTGTATGGTGACAGATGGTAACTAGACTTATTGTG
GTGATCACTTCACAATGTATA----CAAATGTCGAATCACTATGT-TGTACACCTGAAA---CTAATATAACATTGTATG
TCAATTATA-CTCAAATAAAAAAA--------------------------------------------------------
---------------------------------
>Canis_familiaris
CAAAGACTTTTGCTCAAGAGGTTCCT-TCTTCCAGGAGCACG-------CTTACCCGCGCTTACCCCGC----------A
A------AATAACCCCCTCCATCACC---TTTGAGGAGTCGT---------------GGCTGTTAACTAGACTTCGTGTG
CCCATCACTGCGCGACCTAGA----CAAAGATTGTGTCCTCATGC-TGGACTCCAGAAG---CGGATATAATGTCATGTG
TCAATTGTACCTGAATT---------AAAAGATAATTTTTATT---TTTAAAGACTCAT---CCC-AGTCTTCTCGTCCA
GGAAGTCTACCTGGCGTGCCAGCCCTCCAAGGC
>Felis_catus
CAAAGACTTTTGCTCAACAAGTTCCCGCTTTCCAGGCTCACA-------GTTGCCCACTTTTACCTTGC-----------
A------AAGCAACCATTTTATCACC---TCCGAAGACCCAT---------------GAACGTTAACTAGACTTAATGTG
GTGATCACTTAGCAACAGGGA----CAAATATCGTATCATTATGCTTTTACATCTGAAA---CCAGTATAATGTTAGACG
TCAATTGCACCTCAATTTAAAAAAAAAAAAAAAAGAAATTGCT---TCTGGAGACTCAT---CTCGGGTCACCCAGTCTA
GGAAGTCTACCGAGATTACCAGCCCCCCAAAGC
>Sus_scrofa
CAAC-ACCTTTGCTCAAGAGTTTCC-----TGCAGGAGCACACCTTTACCTTATCCACCTTTATCTCGC------ACAAA
A------AAACCCTCACTCTATCATC---CC---AAAGCCAT---------------GGATGTTAACTAGACTGACGTTG
GTGATCATTTTGCAACAGATA----CAAATATTGTACCATGATGC-TATACACCGGAGA---CTAATACAATGTTATATG
TCAATTATACTTCAATAAAAA-------------------------TTTGAAGACTCAT---TTAAAATCACCTACACTG
AGAAACCTACATGAATTACCAGCCCTCCAACGC
>Tursiops_truncatus
CAAT-ACATTTGCTCAAGAGTTTCTC-TCTTTCAGGAGCACA-------CGAATCCACCTTTACCTTGCAAAAACAAACA
AACAAACAAAAAACCTCTCTATCATC---TTTTAATG-CCAT---------------GGATGTTAACTAGACTTACTTTG
GTGATCATTTTGCAACATATA----CAAATTTCGTATCATTATGC-TGTACACCTGAAACACCTAATATAAAGTTATATG
TCAATTATACCTAAATAAAAAAAAC---------------------TTTTAAGACTCAT---CTTAAATCACCTACTCTA
AGAAACCTACCTGAATTACCAGCCCCCCGAGGC
>Myotis_myotis
CAAAGACC-TTACTCAAGAGGTTCCC-TCATCCAGGAGCACA-------CTTATCCACTTATACCTTATTAAAAAAACAA
A------AAAAACTCACTCTATCATC---TTTTAAG-CTCAT---------------GGATGTTAACTAGATTTATGGTG
GTTACCACTTCCCAATACATATATGCAAATATCATATCATTATGC-TGTACACCTGAAA---GTAATATAATG-----TG
CCAATTAAAGAAAA--------------------------------TTTAAAGACTCAT---TTCAAGTCGCCTATTCTA
AGAAGTCTACCTGGAACACCAGCCCTCTGAGGT
>Rousettus_aegyptiacus
CAAAGACCTTTGCTCGAGAGGCTCCC-TCTTTCGGCAGCACG-------CTTATCCACCTTCACCTTCC---------AA
A------AAAGCCCCACTCTGTTATC---TTTTAAGACTCAA---------------GGATGTTAACCAGACTTACAGAG
GAGACCAGTCC-CAATCCATA----CAAGTATCGTATCATTACTC-TGTACACCTGAAA---TTAATATAATGGTATATG
TCAATTATACCTCAGTTAGAAAAAATTAT-----------------TTTAAAGACTCAT---CTCAAGTCACCTCTTCTA
AGAATTCTACATGGACTACTAGCCTTCTGAGGC
>Equus_caballus
CAAAGACCCTTGCTCAAGAGGGTCCC-TCTTCTGGGAGCACA-------CTTATCCACCTTGACCTTGC-----------
A------AAAAACCCACTCTATCATC------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------TTTTAAGACTCTC---CTCAAATTACTTCCTCTA
AGAAGCCTACTTGGATTACCAGCCCTGCAAGGG
>Ceratotherium_simum
CAAAGACCTTTGCTCAAGAGGTTCCA-TACTCTGGGAGCACA-------CTTATCCACATTGACCTTGC-----------
A------CAAAACCCACTCTATCATC------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------TTTTAAGACTCTC---CTCAAGTCACTTACTCTA
AGAAGCCTACTTGGATTACCAGCCCTCCAAGGG
>Condylura_cristata
CAAAGAACTCTGT--------------CTTGCCAGGAGCATG-------TTTATCTACCTT-ACTTTGC-----------
-------AAAAAGC-------TCCTT------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------GTTTTAGACTCAC---CTCAAGTCGCCTGCTCT-
-GATGCCTAGCAGGAGCACCAATCCTCCAAGGC
>Sorex_araneus
CAAAG---------------------------------------------------------ACCTTAC-----------
-------AAAATTCTCTTTCATCATT------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------TTCTAAGACTTTT---ATCAAGTAGCCAACTCTC
AGAAGTACACCTTGATTACCAGCCCTCTAAGGC
>Homo_sapiens
CAAAGACCCTTGCTCAAAGGGTTTCC-TTTTCCTGGAGAACA-------CTTCTCCACCTTCGTCTGAA---------AA
A------AAAAAAAATCTTTATCATC------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------TTTTAAGATATGC---TTCAAGCCATCTACTCTA
AAAATCCTACCTGGATTAACAGTCTTCCAAGGC



Dog293_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------------------------------TTTTTCCAGCTTTATTG-AGGTATAATTGACAAATAAAAATTGTA---
TATATTTAAGGTGTACAACGTGATGTTTTGATATA-CGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACAT
ATCCATCACCTCACATAGTT------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------ACCATTTTTTTGTGTGTGGTGAGAACAC
TTAAGATCTACTCT------------------------------------------------------------------
-----
>Canis_familiaris
TGGGGGAGGGCATGTGAGAGTGGAGGCTCAATGCCAGCAAACGGTCATTCTGC---ATTGC-----------CTTTTTTA
AA---GGTAGAAATCAATATGATTT------CTACTTTCAGTTTTACTG-AAATATAACTGACATACA-TCACTGTA---
CAAATTTAGGGTGGACAGCATGGTGACTTAACTTA---CATTTAGCGTGAAATGATTAGCACAGTAAGTTTAGTTCACA-
-TCCATCACCTCATATTGTT------------------------------------------------------------
--------------AAAAGAAAGAAAGAGAGAGAAGAGAGGGGAGGATGGAAAAAGGGAGGGAGAAGGAGGAAGCTGAGA
AGGGTGACAGAGAGAGGCTGGGAA----------GGAAGGAAAAGGAAAAAAAGTGTTTTTCCTTGTGAAG--AGAATTT
TTAGG------------GCTGCTTGAAG---TCTTACA-CTGGCACTGATG-GTCTACATGGGGACTTTGAAGGGACGTC
-TTGC
>Felis_catus
TGAGGGAAAGCATGTGAGGGGGAGGCCATA-----TACTAGCATTTGCTCTAC---ATTGTTTCATTGTTGTTGTTGTTT
AA---CTTAGAAATAGTGGGGGT--------TTTTTTTCAGTTTTATTG-AGATATTATTGTCATACA-TCACCGTA---
TAAATTTAGGACATACAACATGGTGACTTAACTTA---CATTTAGTTTGAAATGATTAGTACGATAAGAGTAGTTAGCA-
-GCTATGACCTCATATAGTTGAAAGAAAGAGAAGAATGAAAAAGAAAGGAAGAAAAAAGAAAGAAAAAAGGAAGAAAGAA
GAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAAGAAAGAAGAGAGAAAGAAAGAAAGAAAGAAAGAAAGGAAAGAAAGAA
AGAAAGAAAGGAAGAAGGGAGGGA----------GGAAGGAAAA-GAAAAAATGTGTTTTCCCCTATGGTG--AGAATTT
TTAGG------------ATTGTTTTAAG---TCTTACCTCTGGCACTGATG-GTCTGTGTGGGGGCTTTCAAGGGACGCC
-CTGC
>Manis_pentadactyla
TGCAGGAAGGCCAGATGACCTGAGGACCAAACACCCCC----AGTCCTTCTCT---GTTCC-----------TTTTTTTA
AA---GGCAGAAACCATATGTATATTT----TTTCTTTCAGTGTCATTG-AGATGTGA-TGACATGCA-TCACTGTG---
TAAGTTTAAGGTGTACTGCATGATGACTTGAATTA---CATTTATTGTGAAATGATCACCACAATAAGCTTAGTTAGCA-
-TT-ATCATCTCCTGTAGAT------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------ACA----------AACCAAGAAAAGAAAAAATGTAATTTTCCGTGTGATG--AGGAATT
TTAGG------------ATTGCTTTAA----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNN
>Sus_scrofa
TGTAGGCAGGAATGAGAAAGGGCGGACC-AGCCCCGATGAACAGTCCTTCTCC---CCTGA------------GTTTTTA
AA---GGTAGAAATCGTGCGTATAT------GTTTGCGTTGTTTTCTGT-GTATGGAATTGACATACA-CGACGC-----
TCCGCGCAAGGTGTGCAGCAAAAGTCTTCAGC--A---CGTACATCGTGAAATGATTAC------AAGTGTTGCTGACA-
-CCCCTCACCTCGTATAGTT------------------------------------------------------------
--------------------------------------------------------------------------------
--------------ATTTTTAAAA----------AGAGGGAAAAAGGAAAAATGCATTTTCCCTGGTGGTG--AGAACTT
TTAGC------------CCTGCCCTGA-----TCGACCGCTGGCACCGATG-GTC-ACCTGGGGACCCTCACGGGCCTCC
-CTGC
>Bos_taurus
TGCAGGAAGGAGTGAGAAAGGG-AGGCAGAGAACCAACTAACAGTCCT-CTCT---ACTAC------------TTGGTTT
AA---GGTAGAAATCATGTGAATACATATATTTTTTTTTTGTTTCATTG-AGATATAACTGACAAACA-TCACTGT----
TAAGTCTACAGTGTAAAGCATAATGACT--ATTTG---CATATATTGTGGAATGGTTACTACAAGAAGTTTAATTAACA-
-TTCATCACCTCATATAGTT------------------------------------------------------------
--------------------------------------------------------------------------------
--------------ATTAAAAACA----------GAAAGAAAAAGAAAAAAGTGTATTTCCCTTTGTGATA--AGAACCT
TTAGC------------ACTGCTTTAA----TCTCACTTCTGACACTGATG-GTCTCTGTGGGGACTTTCAAGGGCCTCC
-CCAT
>Condylura_cristata
TGCAGGAAGGAATGAGAAAGAGATGGCTCACTACCA------AGTCATTCTTC---ATT--------------------T
AA---GATAAAAATCA---------------TATCTTTTAGTTTTAATG-AGATATCTTTGATATACA-GTACTGTAAGT
TTAATATAATGGATACCATATAATAACTTGATTTC---TGTCTATCATGAGATA--------GATAAGTTTATTTAACA-
-TT-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
-GAAAGTGAAAAAGGAGGGAAGGA----------CAGAGTAAAGAAAGAAGATTTTTTTTTTTTAATGATGAAAAAACAT
CTAGG------------ATTTCTTTAAA---TTTTGCCTCTGGAAACAA---GAATCTATGTGGAGTATCAAGGGACTCT
-CTGT
>Erinaceus_europaeus
TGCAGGAAGGAGCTAGAAGGTGAGAGCCAAAGG--TACCAGCAGTCCTTCACC---ACTG----------------TTTT
A----------------------------------------TTTGAGGGTAGAAATCCC----ACACA-GTATATTCTGT
TTACGGGAGTC----CTGTTCAGTGATTTAGCTACATATGTCTTACATGTGTTC--------TG-AAGTGAATTCCACA-
-GT-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
-CCATGGCATCACCACCCATCACATCCAGAGCCACAAAATAAAAAAGACACA---TCTTTCCCTTCTGGTG--AAAACTA
TTAGG------------ATTGCTCTGCA---TTTTGTGTCTGGCACCAGGACACCTCCGTAAGGACTTCCTGGAGTCTCC
-CTGC
>Equus_caballus
TACAGGAAGGGGTGAGAAGGGGAAGGCTAA-----TGCCAACAGTTCTTCCTC---ATTGC---------------TTCA
AA------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------TCTTACCTCTGTCACCAAGG-GTCTATGTGGAGACTTTCAAGGGACTCC
-TTGC
>Ceratotherium_simum
TGTAGGAAGGAGTGAGAAGGGGAAGGCCAAATACCCACAAATAGTTGTTCTTT---ATTGC---------------TTTA
AA------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------TCTTACCTCTGTCACAAAGG-GTCTACGTGGGGACTTTCAAGGGAGTCC
-TTGC
>Myotis_myotis
TGCAGAAAGAAATGAGAAAGGGAAGTCCAAGT-CTAACAGATAGCCCTTCTT----ATTGC---------------TGTA
AA------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------TGTTACCTCTGACACCAAGG-ATCTGTGTATGGACTTTCAATAGACTCC
-CTGC
>Rhinolophus_ferrumequinum
GGCAGGAAGCGAAGAGAAGGG--AAGCCCAACACCAACACACAGCCCTCCTGT---AT-GC---------------TGTA
AC------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------TCTTACTTCTAGCACCA-GG-CTGTATGTGCAGACTTTCAAGGGACTTC
TTTGC
>Cavia_porcellus
TGTAGGACAGCATGAGAGGCTGAAGGCTCGACAGCTACCAACTGTCCTTCCTC---CT-GC-------------------
CA------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------TT--ACATCTGACATACAGGCGAC-GCACAGGGACTACCAAGCATCAAT
CTACC



Dog294_LINE

>L1_CARN7_3END
--------------------------------------------------------------------------TTTTTT
TATTTG-AGTATAATTGACATACAATGTTATATTAGTTTCAGGTGTACAACATAGTGATTCGACATT--TGTAT-----A
CATTGTGAAGTGATCACCACAATAAGTCTAGTTACC--------------------------------------------
------------------------
>Canis_familiaris
AAAAGGAATCTGCCTGTCTGCTCAGATAGAA--TTCTGGAGTGGCAGTTATAGAGTCTGA---TCCTTT----TTTTTTT
AAATCGA---CTAAGTGACATAGAACATTATATTAGTTTTAAGTGTACAGCATAATG-------ATTTGTGTAT------
-ATTGTGAAATGATCACCATGATAAG-------------TTCA--------C--AGTGACTACTGTGCAAGTTAACAGGA
CTTATGAAAT---TGACTCA-CAA
>Felis_catus
AATAGGAATCTGCTTGCCTGCCCAGAGAGAGACTTTTGGGGTGGCAATTCTAGAGTCTGA---TCCTTT---TTTTTTTT
TTATTGAGGTATAATTGACGTAAGACGTTTTATTAGTTTCAAGTATATAACGTAATGATTCAATATTCGTGTAT------
-TCTGTGAAATGATCACTACGATGAG-------------TTCAGT---AA-C--AGTGATTGCTACCCAAATTAACAGTA
CTTTTGAAAC---TGACTCA-CAA
>Manis_javanica
CAGAAG----------------------------------------------GAGTCTGA---TCCTTT-----------
--------------------------------------------------------------------------------
------------------------------------------------AATT--GGTGATTACTG-----------ACGA
CTTTTGAAAC---TGACTCA-CAC
>Sus_scrofa
AAAAGAAATCTGCCTGCTTGCCCAGAGAGAGACATCTGGGG----AGTTCCAGAGTCTGA---TTCTTT-------TACT
TTGTTAAAGTATAACTGATGTACAATATTATATTAGTTTCAGGTGTATAATACAATGATTTTATATTTGTATAT------
-ATTATGAAATGATCACCACAATAAA-------------TTTAAT---AATC--ATTGATTGTTGTTGGAGCTGACAGGA
CTTTTGAGAC---CAACTTA-CAC
>Tursiops_truncatus
AAAAGGATTCTGCCTGCCTACCCAGACAGAGACTTCTGGAGTGGCAGGTCA-GTGTCTGA---TTCTTT------TTTTT
TAATTGAGGTGTAAATGACATACCATATTATATTAGTTTCAGGTGTATAACACAATGATTTGATATTTGTGTAT------
-ATTGTAAAATGATCACCACAATAAG-------------TCTAGT---AATC--AGTGATTGCTGTCAGAGCTGACAGGA
TTTTTGAAAT---GGACTCA-CAC
>Equus_caballus
AAAAGGAATCTGCCTGCCTACCCAGACAGAGACTTCTGGGGTGGCAGTTCCAGAGTCTGA---TCTTTT------TTATT
TAATTGAAGTACAATTGACCTACAACCTTATATTAGTTTTGGGTGTACAACATAATGATTTGATATTTTTATATTTGTGA
CATTGTGAAATAATCACCACAATAAG-------------TCTAGT---AATC--AGTGATTGCTGCCAGAGTTGACAGAA
CTTGCAAAAC---TGACTCA-CAC
>Ceratotherium_simum
AAAAGGAATCTCCCTGTCTACCCAGACAGAGACTTTTGGGGTGGCAGCTCTAGAACCTGA---TCCTTT-----TTTTTT
TAACTGAAGTATAATTGACATA---CATTATAATAGTTTCAGGTGTACGACATAATGATTTGATATTTGTGTAT------
-ACTGCAAAATAATCACCACAATAAG-------------TCTAGT---AATC--AGCAATTGCTGCCAGAGTTGACAGAA
CTTTTGAAAC---TGACTCA-CAC
>Myotis_myotis
CAAAGGACTCTGCCTG----CCCAGACAAAGACTTCTGCAGTGGCAGTTCCAGAGCATGA---TCCTGT-----------
--------------------------------------------------------------------------------
------------------------------------------------AGTC--AGCGCTTGCTGCCAGAGTTGATGGAA
CTTTTGAAAC---TAAC-----AG
>Pteropus_vampyrus
CAAAAGAATCTGCCTGTCTACCCAGACAGAGACTTCTGGGGTGGCAGTTCCAGACTCTGA---TTCTTT-----------
--------------------------------------------------------------------------------
------------------------------------------------AATC--AGCAATTACTGCCAGAGTTGACAGGA
CTTTTGAAAT---TGACTCA-TAC
>Condylura_cristata
CAAAGGAATCCGTCTGCCTGCCC-GATAGAGACAACTGGCATGGCAGTTCCAGAATCC-----TTTTTG-----------
--------------------------------------------------------------------------------
------------------------------------------------AATC--AACATTTGCTGCCAGAAGTGACAGGA
CTTTGGTAAC---TGACTCACATG
>Solenodon_paradoxus
AAAAAGAATCTACCTGCCTTCCCAGACAGAGACTTCTAGGGAAGCAGTTCCAGAGTCTGA---ATCTTT-----------
--------------------------------------------------------------------------------
------------------------------------------------AATC--AGTGATTGCTGCCAGAGTTGATAGAA
CCTTTGAAGCTAATGACTCATTAT
>Homo_sapiens
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCAGTTCCAGAGTCTGA---TCCTTT-----------
--------------------------------------------------------------------------------
------------------------------------------------AATCACAGCAGTTTCTGCCAGA----------
--CTCAAAAC---TGACCCA-CAC



Dog295_LINE

>L1MA9_3END
------------------------------------------------------------------------CGTATATC
AAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA-------
---------------------------------------------------------------------
>Canis_familiaris
AAAAACAAAACAATAATGAAAATATGATTTAGCCTATTAAACTTTCAGAAGCT---AAAAATAAAAATA-----------
----CATTATGCAGTACATTTTAAACTTATAC-AGTGATGTATGTCAATTATATCTCAATAAAACTGGA-----------
-AAAAA-TAAAAATA---ATACTAAGTTTGGCAAGCTTGGGACAGTATAAATATAAGTAC----ATTTT
>Felis_catus
AAAAACAAAACAATAACAAAAATATGATTTGGCCTATTAAGCTTTCAGAAACT---AAAAATAAAAATA-----------
----CATTATGTGGTACACCTTAAACTTTCAC-AGTGATGTATGTCAATTATATCGCAATAAAACAGGAAAAAA------
-TAAAA-TAAAAATA---ATATTCAGTTTGACAAGCTTGGTACAGTATAAATAGAAGTACAAC-ATTTT
>Manis_pentadactyla
AAAAATAAAACTATAACAGAAATATGATTTAGCCTATTAAACTTTCAGAAGTT---AAAAACAGAAATA-----------
----CATGATGCTGTATACCTTAAACTTACAC-AGTGATGTATATCAAATATATCTCAATAAAACTGGA-----------
-AAATA-AATAAATA---ATATTCAGTTTGGCAAGCTTGGTACAGTATGAATATAGGCACAAC-ATTTT
>Sus_scrofa
AAAAACAAAAC---AACAAAGAGACGATTAAACCCATTAAAATTTCAGAAGTT---AAAAATAAACATA-----------
----CCTTGTGCTGTATAGCTTAAACTTTTAC-TGTGATATATAGCAATTATATTTCAACAAAACTGGAAAAAATAAG--
-TTAAA-TAAAAACA---ATATTCAGTATGGCAAGCTTGGCACAGGATAAACATAAGAACAAT-ACTTT
>Bos_taurus
AAAAACAAGACAATAACAAAAATATGACTAAGCTTATTAAAATTTTAGAAGTT---AAAAACAGAAATA-----------
----CATTATGCTGCACACCTTAAATTTATAC-AGTGATGTACAGCAATTACATTTCAATTAAATAAG------------
-TTAAA-TAAAAATA---ATGTTCAGTTTGGCAAGCTTGGTACAGTATAAATATAAATACAAT-ATTTT
>Myotis_myotis
AAAAACAAAACAATAACAAAAATATGATTTAGCCTATTAAACTTTCAGAAGTT---CAGAATAAAAATA-----------
----CATTATGCTGTATACTTTAAACTTATAC-AGTGATGTATGTCAATTATAGCTCAATGAAACTGGAAAGAAA-----
-TAAAA-TAAAAATA---ATATCCAGTTTGGCAAGCTTGATACAGTATAAATATAAATGCATC-ATTTT
>Rousettus_aegyptiacus
AAAAACAAAATGATAACAAAAATATGATTTTGCCTATTAAA-TTTCAGAAGTT---AAAAATAAAAATA-----------
----TATTATGCTGTACACCTTAAACTTATAC-AGTGATGTATGCCAATTATATCTCAATAAAACTGGAAAAAATAA---
-TAAAA-TAAAAATA---ATATTTGGTTTGGCAAGTTTGGTACAGTATAAATATAAATACAAC-ATTTT
>Equus_caballus
AAAAATAAAACAATAACAAAAATACGATTTAGCCTATTAAACTTTCAGGAGTT---------------------------
--------------------------------------------------------------------------------
-AAAAA-TAAAAATA---ATATTCAGCTTAGCAAGCTTGGTTCAGTATAAATATAAGTACAAT-ATTTT
>Ceratotherium_simum
GAAAAGAAAACAATAACAAAAATATGATCTAGCCTATTAAACTTTCAGAAGTT---------------------------
--------------------------------------------------------------------------------
-AAAAA-CAAAAATA---ATATTCAGTTTGGAAAGCTTGGTATGGTATAAATGTAAGTACAAT-ATTTT
>Condylura_cristata
AAAAACAAAACAGTAATAAAATTACAATT-AGCATATTAGACTCTCAGAAGTT---------------------------
--------------------------------------------------------------------------------
-AAAAATTATAAGTA---ATACTCCGTTTGTCAAGCTCTGTGCAGTATTGGTGT----------ACTTC
>Solenodon_paradoxus
AAAAATGAAACAATAACAAAAATAGGATTTAACCTATTAAACGTTCGGAAGTT---------------------------
--------------------------------------------------------------------------------
-AAAAA-TAAAAATG---ATACCCAGTTTAGCAAGTTTGGTACCAT-TAAATATAAATAC----ATCTC
>Homo_sapiens
AGAAACAAAATGATAACAAAAATATGATTTACCCTATTAAATTTTCAGAAGTT---------------------------
--------------------------------------------------------------------------------
-AAAAA-TAAAGATA---ATAT----TTT------ATTGGTGCAGTATAAATATAAACACAACAATTTT



Dog301_LINE

>L1_CARN7_3END
--------------------------------------------------------------------------------
----------------------TTTTTTTATTTGAGTATAAT-------TGACATACAATGTTATATTAGTTTCAGGTGT
ACAAC------ATAGTGATTCGACA-TTTGTATACATTGTGAAGTGATC----ACCACAATAAGTCTAGTTACCATCTGT
CACCATACAANGTT------------------------------------------------------------------
------------
>Canis_familiaris
TT----------TGCTCACACAAAC-----ATATTTGGAAGTCTTTGAACAGA---GTGATTTACCTTTTCTGTGTGTG-
---------TTTTATTAAT-------------GAGGTATAAT-------TAACCT------------TAGTTTCACGTGT
ACAAC------ACAAGGACTCAATA-TTTGT----ATTGTG------TC----ACCACAGTAAGTCTAGTTCATAT----
--CC-------------ATGGCTTACCTTTTTATTTATT---CTGGGGCCTAAGGGGTATAATAGTTAATTTTCTAAGAT
GTCAACGAGGGA
>Felis_catus
TT----------CGCTCACACAAAC-----ATATTTGGACATCTTTGAACAGA---ATGATTTACATTTTCTGTGTGTAT
G--------TTTTATTA-T-------------GAGATATAAT-------TG-CATAT--------ATTAGTTTCAGGTGT
ACAAT------A--------------TTTGTATATGTTGTGAAATGATC----ACCACAATAAGT---------GGTGAT
CACC-------------ATGGTTTACCTTTTTATTTATT---TTGGGGCCTACGGGGTAGACTAGTTAATTTTCTAAGAC
GTCACTGAAGGA
>Manis_pentadactyla
TTTT-ATAAGAATGCTCACACAGGCATCGTATATTTGGACATCTTGGAGCAGA---ATGATTTACCTTTCATGTGTGTTT
G---TTATCTTTTGTTATT-------------GAGATATAATTTATAATTGAGATAGAA-----CATCAGTTTCAGGTGT
GCAGT------GTAATGATTTGATC-TCCGTCTGCATTGCAAAATGATCAATTACCACAAAAAGTCTAGTTAATGTCCAT
CACC-------------ATTGTTTACCTTTTT-TTTATT---CTAGGCCCCAAGGGGTGTAACAGTTAACTTTCTAAGAT
GTCACTAAGGGA
>Sus_scrofa
CTTTTAAAAGAATGCTCACACAAAC-----ATATTTAGACATTTTTGAACAGA---AT-ATTTACCTTCTGTG-------
---------TTTTATTATT-------------GAGAAATAAT------TTAACGTATAA---CATATTAGTTTCAGGTAT
ACAAC------ATAATCTTTCGATGTTTTGTGTATCTTGCAGAATGCTC----ATTGCAATAAGCCTAGTTAACATCCAG
CACC-------------ATGATTTACCTTGTTATTTATT---CTAGGGCCTAAGGAGCATAATAGT----TTTCTAAGAC
ATCACTGAGGGA
>Bos_taurus
TCTTAAAAAGTATGTTCACATAAGCACCTTATGTTTGGACATCTTTGAACAGA---ATGATTTACCTTTTGTGTGTGTGT
G---------CGTGTTATT-------------GAAATAGAAT-------TGACACATAA--------TAGTTTCTTGTGT
ACAACATAGTAATAGTAATTTGATA-TTTATATATATTGCAAAATGATC----ACAGCAATAAATCTAGTTAATGTCCAC
CACC-------------ATGGTTTAC-TTTTTATTTATT---CTAGGGCCCAAAGA-TATAATTGTTAATTTTCTCAAAT
GTCACTCAGGGA
>Equus_caballus
TTTT-AAAAGAATGCTCAAAGAAACATCTT-TATTTGGACATCTTTAAATAGA---AAGATTCACCTTTTGTGTGTATGT
G--TGTGTTTTTTATTATT-------------GAGATATAAC-------TGACATATAA--------TAGTTTCAGGTGT
ACAAC------ATAATGATTCGATA-TTTGTATATATTGCAAAATGATC----ACCACAATAAGTCTAGTTAACATCTGT
CACC-------------ATGATTTACCTTTTTATTTATT---CTAGGGCCTAAGGGGTATAATGGTTAATTTTCTAAGAC
ATCAGTAAGGGA
>Ceratotherium_simum
TTTTAAAAAGAAGGCTCACAGAAACATCTTATATTTGGATATCTTTAAAGAGA---ATGATTTGCTTTTTCTGTGTGTTT
GTTACCTTTTTTCATTGTT-------------GAGATATAAC-------TGACATATAA---CATAGTAGTTTCAGGTGT
ACAAC------ATAATGATTCAACA-TTTTTACATATTGTCAGATGATC----ACCACAGT--GTCTAGTTAACATCCAT
CACC-------------GTGATTTACCTTTTTATTTATT---CTAGGGCCTAAGGGGTATAGTAGTTAATTTTCTAAGAC
ATCACTAAGGGA
>Myotis_myotis
TTTTAAAAAGAATCCTCACGCAAACATCTTATGTTTGGACATCTTTGAATAGA---ATGATTTAATTTTTTT--------
------------ATTCATT-------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------CTAGGGTGTAAGGGGTTTCATAGTTACTTTTCTAAGAC
GTCAGTGAGTGG
>Rousettus_aegyptiacus
TTTTAAGAAGA------ACACAAACATCTTAGATTCGGACATCTTTGAACAGA---AAGATTTAACCTTTTT--------
------------ACTTATT-------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------CTATGGCCTAAGGAGTATAATAGTTAATTTTCTAAGAT
GATACCAAAGGA
>Condylura_cristata
TTTTAAAAAGAATGCTCATGCAAATATCTTGAGTTTGGACATCTTTGAATGGG---ATGCTTTGCCTTTTT---------
------------ATTTTTT-------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------CTAGAGCCTAACTGGTATGATATTCCATTTTCTGAGAT
NNNNNNNNNNNN
>Sorex_araneus
TTCT-AAAAGAATGTTTGTGGAAGTATCATTTATTTGGAC----------AGA---ATGATTTATTTCACT---------
------------ATTTATT-------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------CTAAGCCCTAAAAGGTACACTAGTTNNNNNNNNNNNNN
NNNNNNNNNNNN
>Homo_sapiens
TTTTCATAAGAATACTCAC----ACATCTTACATTTGGACATCTTTGAACGGA---ATTATTTACCTTTTC---------
------------ATTTATC-------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------CTAGGGCCTAAGGAATATAATAGTTAA-TTTCTAAGAT
CTCACTNNNNNN



Dog302_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
----------------------------------------------------------ATGTGAGGTGATGGATATGTTA
ATTAGCTTGATTGTGGTAATC----ATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATAC
AATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA---------------------------------------
--------------------------------------------------
>Canis_familiaris
TAGGAAAACATTCACA-TTTACGG------------------------------------------------TA---TTT
TTATTTTGATATTCAAATG---AAAGAA---------------TAGTAGATAACT----------------G--ATATTA
GCTGGAACTTTTGGTATAA---------TCATCA--TATATGTAAATCACACCATCATACTGTATACCTTAAACTTATAC
AC-TGATGCATGTCAATTAT-TTTCAGCAAAACTAGGGGAAAAAAA---GAATAATAATAACCAACC---ATTGGAAATG
TAGAAAGAAT-GATAATGCAAGATA---AGGCAACACATTTCTTAGAATC
>Felis_catus
TAAGAAAACATTCACATTTTACAG------------------------------------------------TA---TTT
TTATTTTGATATTCAAATG---AAAGAA---------------TATTAGATAACT------------GATGG--ATGTTA
GCTGAACCTTTTGGGATAATC----ATTTCATAA--TATATGTAAGTCAAACCACCATGCTGTACATCTTAAACTTATAC
AA-TGATATATGTCAATTATTTCTCAATAAAAATAGGAAAAA-------AAAGAATAGTA-ATAACC---AACAGAAATG
TGGGAAGAAT-GATAATGCAAGATA-------------------AGGAAT
>Vicugna_pacos
TAGGAAAACTTTCACATTTTACGG------------------------------------------------TATTGCTT
TTATTTTGATATTCAAATG---AGAATATTCATGATATTCAAATAGTAGATGACT------------GATGG--ATGTTA
GCTGGACCTACTGTGATAACC----ATTTTACAG--TATATGTAAATTGGACCATCATGCTGTGCACCTTAAACTTATAT
AA-GGATGTATGTCAATTATTTCTAAATAAAACTGGAAAA---------AAATAATAGTAGATAACC---AACTGGAATG
TGGAAAGAAT-GATAATGCAAGATGAAGAGGCAACAAATTG-TAAGGATT
>Bos_taurus
TAGGAAAACATTCATATTTTATGC------------------------------------------------TACTGTTT
TTATTTTGATATGCAAATG---AAAGAC---------------TAGTAGGTAACT------------GATGC--TCATTA
GTGGAACCTATTG--ATAGCA----ATTTTATAA--TATATGTAAATCAAGCTATCATGCTGTAAACTTTAAACTTATAC
AG-TGATGTATGTTAATTATTTTTCAGTAAAACTGGAAAAA--------AAAGAATAGTGGATAACC---AACAGAAAAG
TAGAAAGAAT-GATAATGCAAGATGAGAAGGCAACATTATG--AAAGATG
>Equus_caballus
TAGGAAAACATTCATATTTTACAG------------------------------------------------TACTGTTT
TTATTTTGATACTCAAATG---AAAGAA---------------TAGTAGATATCT------------GGTGG--ATATTA
GCAGAACCTATTGGGATAATCATTTATTTCACAG--TATATGTAAATCAAACCATCATGATGTGCACCTTAAACTTATCC
AG-TGGTGTAGGTCAATTCTTTCTCTCTAAAACTGGAAAAGAA------AAAGAATAGTAGATAACC---AACAGAAATG
TGGAAAGAAT-GATAATGCAAGATAAAAAGGCAACAAATTTTTTAGGACT
>Ceratotherium_simum
TAGGAAAATATTCATATTTTATGG------------------------------------------------TATCGTTT
TTCTTTTGATATTCAAATG---AAAGAA---------------TAGTAGATAACC------------AATGG--ATGTTA
GCAGAACCTATTGCGATAATC----GTTTCACAA--TATATGTAAATCAAACTATTATGCTGTGTGCCTTAAACTTATAC
AG-TGGTGTATGTTACTTCTTTCTCAATAAAACTGGAAAAGAG------AAAGAATAGTAGATAACC---AACAAAAATG
TGGAAAGATT-GGTAACACAAGATA------------ACATTTTAGG-CT
>Myotis_myotis
TAGGAAAATATTCACA-TTTACAG------------------------------------------------TGCTGTTT
TTATTTTAATACTCACATG---AAAAAA---------------TAGTAGCTAACC-------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------AACAGAAATG
CGGAAAGAAT-AATAA----------GAAGGCAACACATTGCTTAGGACT
>Pteronotus_parnellii
TAGGAAAACATTCACATTTTACAG------------------------------------------------TACTGTTT
TTATTTTAATATTCATGTG---AAATAA---------------TAGTAGATGAGT-------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------GACAGAAATG
TGGAAAGAATGGACTATGTAAGATA-GGAGGCAACAAATTGCTTTGGACT
>Condylura_cristata
TAGGA--------------TATAG------------------------------------------------TATCATTT
TTATTTTGATATGTAAATG---AAAGGG---------------TAATAGATAACC-------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------AAAAGAAATG
AGGAAAGA-T-GATAATGCAAGATAAGAAGACAGCAAATTTCTGAGGACT
>Solenodon_paradoxus
NNNNNNNNNNNNNNNNNNNNNNNN------------------------------------------------NNTCATTT
TAATTTTGGCATTCAAATG---AAAGGA-------------------------TC-------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------AGCAGAGATG
TGGAAAGA-T-GATAATGCAAGATTAGATGGCAACAAATTTCTTAGGACT
>Homo_sapiens
TAGGAAAATGTTGA-ATTTTACTGAGTGCCAGAAAAATCTTAAATGGAAAATGTTATGAAAACGTTGAATTTTACTGTTT
TTGTTTTGATATTCAAATG---AAAAAA---------------TAGTAGATAACC-------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------AACAGGAATG
TGGAAAGAAT-AATAATGTAAGA-----AGGCATCAAATTTCTTAGGACT



Dog303_LINE

>L1_CARN7_3END
--------------------------------------------------------------------------------
-----------------------------------------------------------------TTTTTTTATTTGAG-
TATAATTGACATACAATGTTATATTAGTTTCAGGTGTACA-ACATAGTGATTCGACATTTGTATACATTGTGAAG-----
--------------------------------------------------------------------------------
-
>Canis_familiaris
GAA-TTTTCCCATT----CTGCTTTTCCTTTT-TAAATATTCTTTTGTTCACCTTATCTG------TTTCTCCATTTTT-
---AAATGGCTCAAACAAAATAGAA-------------------------------------GTTTTTCGAAAATTGAGA
TATAATTGACATATAACATTATATTAGTTTCAAGTGTTTA-ATGTAATGATTCGATATTTGTA-A-------------CT
-TTTCTCCATGTTC---GATTAATGA-TATAGAGT----CCTCCCAA-------AAGAGCCTCCTCAGTATCCGCGTTTT
T
>Felis_catus
GAGCTTTGCTCATC----CTACCTTTCCTTTT-TTAAAATTC--TTATTCACTTTATCTT------TTTGTCCATTTTT-
---TAATGGCTCAAACAAAATAGAAAATTGAGATATAATTGACATATAACATTATGTTAGTTTTTTTTTTTTAATTGAGA
TATAATTGACATATAACATTATGTTAGTTTCAGGTGTTTACACATAATGATTTAATATTTGTA-A-------------CT
TTTTCTCCGTGTTT---AATTAATAA-TGTAGAGT----CT-CTTAT-------AATAGCCTCCCCAATATTTCCA-TAT
T
>Manis_pentadactyla
AAACTTTTCCCAT-----CTACCTTTCCTTTTTTTTATACTTC-TGATTCACTTTATCTT----TTTTCTCCCATTTTT-
--TTAATGGCTCAAACAAAATGGAA------------------------------A---TTTATTTGCTTCAAATTGAGG
TATAATTGACA--TAACATTATATTAGTTTTGGGTATCCA-ACAAA--------ATATATGTA-A-------------CT
TTTTCTCCATTTTT---GATTGATAA-TAGAGCGT-------CCCAA-------AATAACCTCCTGAACATCTCCA-TGT
T
>Sus_scrofa
GAACTTTTTCAGTT----TTAACTTTATTTTT------TTTC--CTTCTTACTCTGTCTT------TTTCTCTATTTTT-
---TAATGGCTCAAACAAAGTTGAA----------------------------------GTTTTTTTTATTTAGATGAGG
TATAATTGATATGTAAC---ATATTAGTTGCAGGTGT----ACAACAGAATTCAATATTTGTA-A-------------TT
TTTTCTCCAGTTTT---GATTGATGATCATAGAGC----CT-CCCAA-------AATAGCCTCCTTAGTATCTCTG-TAT
T
>Tursiops_truncatus
GAACTTTTCCAGTT----CTAACTTTTCTTTT-----GTTTC--TTATTCACTCTATTTT---------ATCTATTTTT-
---TAATGGCTCATACAAAATAGAG------------------------------------GTTTTTTTTTTAATTGAGG
TATAATTGACATATAACATTATATTAGTTGCAGGTGT----ACAACAGGATTTGATATTTGTA-A-------------CT
TTTTCTCCCATTTT---GATTGATGGTTATAGAGT----CC-CCCAA-------AATAGCTTCCTCAGTATCTCCA-TAT
T
>Equus_caballus
GAACTTTTTCCATT----CTACCTTTCTTTTTATCCCCCTTC--TTATTCACTTTATCTT-------TTCTTCATTTTT-
--TTAATGGCTCAAACAAAATAGAA------------------------------GTTTATTTCTTTTTTTTAATTAAGG
TATAATTGACATATAACATTATATTAGTTTCAGTTATACA-ACATAATGATTCGATATTTGTA-A-------------TT
TTTTCTCCATTTTT---GATTGATGATTATAGAGT----C--CCCAA-------AATACCCTACTCAATGTCTCCA-TAT
T
>Ceratotherium_simum
GAACTTTTTCCATT----CTACTTTTCCTTTT-TTTCCCTTC--TTATTCACTGTATTTT-----ATCTTTTCATTTTT-
--TTAATGG-------AAAATAGAA--------------------------------------AATTTTTCTAATTGAGG
TGTAATTGACATATAACATTATATTAGTTTCAGTTGTACA-ACATAATGATTCGATATTTGTA-A-------------CT
TTTTCTCCATTTTT---GATTGATGATTATGGGGT----CC-CCCAA-------AATAGCCTCCTCAGTATCTCCA-TAT
T
>Myotis_myotis
GAACTTTCCCATTC-TTTCTGTATTTACTTTTTTCTTATCAC--TTTGTTATTTTAT------CTTT-TCTCCATTTTT-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------GATTA---ATTATAGTGT----CT-CCCCCTCCCCCAAACAGCCTATTCAATTTCTCTA-TAT
T
>Rousettus_aegyptiacus
GAATTTTCCCCATT-TTCCTACCTTTTTTTTT------------TTTATCACTTTTTAAT---CTTTTTTTCCATTTTT-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------GATTGATGATTATAGAGTACCCCCCCCCTAGCCCCCCAATAGCCTCTTCAATATCTA---CAT
T
>Condylura_cristata
GAACTGTTCACATTCTTTCTACCTTTCCTTTTTTAAAATTTT---------------------CTTTCTCTCCATTTTT-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------GATTGTTGACTATAAAAT----CTAGCCA--------GATAGCTTCCTCAATAACTCTT-TAT
T
>Solenodon_paradoxus
AAACTTTTCTCATT-----TATATCTTCCTTT--TAAATTTACTTTATTT----GAT------CTTTTTGTCCATTTTT-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------GATTGATTATTATTGAAC----CT-CTCA--------AATGACCTCCTCAGTATCTA---TAT
T
>Homo_sapiens
GAACTTTTCTCATT----CTGTCTACCTTTTT---AAAATT---TTATTCACTTTAT------CTTTTTCTCCAGTTTT-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------GATAGATGATTATAGAGT----TC-CCCAA-------AATGGCCTTCTTACTATTTCTA-TAT
T



Dog307_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
------------------------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGT
GTACAACGTGATGTTTTGATATACGTATACATTGTGAAATGATTACCACAATCAAGCTAAT-------------------
---------------------TAACATATCCATCACCTCACATAGTTACCAT----------------------------
---TTTTTTGTGTGTGGTGAGA---ACACTTAAGATCTACTCTCTTAGCAAATTTCAAGTATAC---AATACAGTATTAT
TAA-CTATAGTCACCATGCTGTACATTAG---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>Canis_familiaris
TTCTAAA----CAA-AGATACTTTGAATTTGGTCTGTTAC---TGGTCATAAT---CTGGTTTCATA---CAAATTTCCC
GAT---TT---TTA----AAATTATTTTTCCAGTCTTATTGAGATCTAGTTGGCACA-CATCACTGTGTAAGTTGAAGGA
GTAGAGCATAATGGCTTGACTTA-ACATGTACTGTGCATTGGTGACCTCAATAAGTTTAAT-------------------
-----------------------TAGCATCCACAATCTCACACAGACACAATAAAAAGCA--------AAAAAA------
--ATATTTCCCTTATGATGAG-----------GATTTAACTCTCT---TATTTTTCATACAGAT---CATACAGCAGCAT
TAG-CTATGGTCATCATG--------------CTGTACACATCACCATTTCCAGAT---ACT----GACAAGTAAAATGG
AAG-AGCTC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------CA------TT-GGGTTTAATTATAATTCTT
TGTC
>Felis_catus
ATCTACA----CAA-AGAAAATTTGAATCTGGTTTGTTAT---CACTCACAAT---CCGGTCTCATA---CCAATCTCCA
GAT---TT---TTA----AAATTATTCTTCTACTTTT-TTGAGATCTAATTGGCATA-CATCACT-TGTAAGTCTAAGGT
GTGTAGCCTAATGGCTTGACTT--ATATACACTGTGCAGTAATGACCTCAGAAAATTTAAT-------------------
-----------------------TAGCAGCCATCAGCTCATATAGACACAATAAAAAGCA--------AAAAAA-----T
ATATATATTCCTTGTGATGAAA---ATTGTTCAGATTTACTCT-----TAACTTTCATATATAT---CATACAGCAGTGT
TAG-CTATAGTTTCCATG--------------TCGT--ACATTACAATTTCTAGAT---TCT----GACAAGTAAAATGG
AAG-AGCTT-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------CA------TT-GGCTTTAATTACAATTCTT
TCTC
>Manis_pentadactyla
CTCTGAGGCAGCAA-AGCTCCTTTGCATCTGGTTTGTTACAATCACTTATAAT---CTTGTTTCACA---TAAATTTCCG
GAC---TG---TTAAAAATCATTTTTTCCCCAGCTTTTTAAAGATATAATTGGCATC-CATCACTGTCTAAGTTTAAGGG
GTACAGCATAATGGTTTGACTT--ATACACATTTTGAACTGATCACCACAGTAAGTTTATCACCTCGTATAGACATCATC
TATCATCTATCTATATCATCGCATTATCTTTATCATCTCAGATATACAAAAAAAAGAGAA--------AACAAAAAAAAA
ATTCCTTTTCCTTATGAGGTAAAT-CCTCTTAGGATTTACTTTCCTAACAACTTTCACATATGGTCTCACACAGCAGTAT
GAA--------CATCATG--------------CTGT------TATAATTTCCAGAT---TCT----CATGCATAAAATGG
AAG-CACTC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------CG------CTGGGGCTTAATTACAATTCTT
TCTC
>Sus_scrofa
NNNNNNNNNNNNAA-AGATACTTTGGATCTGCTTTGTTATCATTTATAATAAT---CT-GCTTCATA---TAAATTTCTA
TTA---CT-TTTCAAGTTACATTTTATGTCCAGTTTTAATGAGATATGATTGATACA-CATCACTGTGTAAGTTTAAGG-
----------------TGACTT--GCGTGCACTGTGA-------------------TTAGT-------------------
-----------------------TAGCATCCATTCTCTCATATAGATACAATTAAAAAG---------------------
------TTCCCTTATTATGAGACTCACTCGTAGACTTTACTCTCT---TAACTTCCCTATGCAT---CCCACAGCGGTGT
TAATTTCCAGTCATCATG--------------CTGG--ACAGTACAATCCCCAGAT---TTT----GACAAGTGAAAGGG
GAA-CGTTC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------CA------CT-AGATTTAATTATAATCTTT
TCTC
>Bos_taurus
CTCCAAAGAAGCAA-AGATGACTTGCATATGGTTTGTTAT---AATCACTAAT---CTGGTTTCATA---TGAATTTCCA
GAT---TTAAGTTA----CTTTTTTATTTCTAGTTTTAATGAGATGTGATTGACATA-CATCACCGTATAAGTTTAAGGT
GTGCAGCGTAATAGTCTGACTT--ACATGTATTGT-----GATTACCAC-------------------------------
------------------------AACACCCATCATCTCATATAGATACAATTAAAAAA---------------------
--CTTTTTTCCTTGTTAGGAGACTTACTCTCAGGATTTATTCTCTTAGCAACTTTCCTATATATTAATATATAGCAGAGT
TAA-CTACAGTTCTCATG--------------CTGT--ACATTACAATTCCCAAGT---TTT----GACAAGTGAAATGG
AAA-AGTTC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------CA------TT-GGGTTTAATCCCAAGTCTT
CCTC
>Equus_caballus
CTCCAAAGAGGCAA-AGATACTTTGGAGCTGGTTTGTTATAATCATTCATAAT---CTGATTCCATA---TAAATTTCCA
GGT---TT---T---------ATTTTTTCTCAATTTTCTTGAGATGTAATTGACATA-CATCACTGTATATGTTTAAGAT
GTACAGCATAATGGTTTGACTT--ACATATATTATGAAGTGATAACCACAATAAGTTTAGT-------------------
-----------------------TAGCATCCATCATCTCATAGAGATATAATAAAAAGAA--------AAAGA------A
TTTTGTTTCCCTTGTGATG------ACTCTCAGGATTTACTCTCTTAACATCTTTCGTACATAT---CATACGACAGTGT
TAA-CTACAGTCATTATG--------------TTGT--ATACTACAATTTCCAGAG---GTT----GACAAGCAAAATGG
AAG-AGTTC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------CA------TT-TGGTTTAATTATAATTCTT
TATC
>Ceratotherium_simum
NNNNNNNNNNNNNNTAGGCCATCAGG-GCTGG-------------CTCAGAAT-------TTCCAGATTTTTTTTTTTAA
GTT---AT---TT-----TTGTTTTTTCCTCAATTTTATTGAG--ATAATTGACATA-CATCACTGTATAAGTT------
-----ACATAATGGTTTAACTT--GCATATATTGTGAAGTGATTACCACAATAAGTTTAGT-------------------
-----------------------TAGCATCCATCATCTCATAGAGATACAATAAAAAGAATTAAAGAAAAAAAA-GAAAA
AAAATTTTTCCTTGTGATG------ACTCCTAGGATTTACTCTC--AACATCTTTCATATATAT---CATACAGCAGTGT
TCA-CTATAGCAATCATG--------------CTGT--ATATTACAATTTCCAGAT---TTT----GACAAGTGAAATAG
AAG-AGATC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------CA------TT-GGGCTTAATTATAATTCTT
TCTC
>Myotis_myotis
CCCCAAAGAAGCAACGGGCACTTGTGATTTGCTCTGTTATAATCCCTTGTAAT---CTGCTTTCGTA---TAAATGCCCT
GGT-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------TTT----CCC-----CAATGG
AAG-AGCTT-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------CA------TG-GTGCTTAATTCCAATTCTT
TCTC
>Rousettus_aegyptiacus
CCCCAAAGAAGCAA-AAATACTTTGGATTTGGTTTGTTATAATCGC--ATAAT---CTGGTTTCATA---CAAATTTCCA
GGT-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------TTT----GAC-----AAATGG
AAG-AGCTC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------TA------CT-GGGTTTAATGACAATTTTT
TCTT
>Condylura_cristata
CTCCAAAGAAGTCA-TGACACTGTGAATCTGGCTTATCATAATCACTTCTAAT---CTGGCTGCATA---TAAATTTCCA
GAT-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------TTTTTTGATGAAGTAAAATGA
AAATAGTTC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------CA------TT-GGG--------------TT
TCTC
>Erinaceus_europaeus
ATTCAAAGAA-----AGATACTGTGAATCTAGTTTTCTATAATAATTGGCAAT---CTAGCTATGTA---TACATTTACA
GAA-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------TTT--TTGGCAGTTACAATGA
AAG-AGCTC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------CA------TT-GGGTATAATTACAGTTCTT
TCTC
>Homo_sapiens
TTCCAAAGAAGCAA-AGGTAGTTTAGATTTGGTTTGTTATAATCTCTTATAAT---CTGGTCTCATATAATATATTTCCA
CAT-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------TTT----GACAAGTAAAATGG
AAC-AGCTCTTTGGGAGGCCAAGGTGGGTGGATCACCTGAGGTCAGAAGTTCGAGACCGGCCTGGCCAACATGGTGAAAC
CCTGTCTCTACTAAAAATACAAAAAATTAGTTGGGCGTGGTGGTGGGTGCCTGTAAATCCCAGCTACTCAGGAGGCTGAG
GCAGCAGAATCGCTTGAACCCAGGAGGCGGAGGTTGCAGTGATCCGAGATTGCACCATTGCACTCCAGCCTGATCAACAG
AGCGAGACTCCGTCTCAAAAAAAAAAAAGGAAAAGAAAAAGGAAAAAGAACAGCTGTGTT-GGGTTTAATTACAATTCCT
TCTC



Dog308_LINE

>L1_CARN7_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------TTTTTTTATTTGAG-TATAATTG--------ACATACAATGTTA-T
ATTAGTTTCAGGTGTACAACATAGTGA-TTCGACATTTGTATACATTGTGAAGTGATCACCACAATAAGTCTAGTTACCA
TCTGTCACCATACAANGTTANTACAATATTATT-----------------------------------------------
-------------------------------GACTATATTC---------------------------------------
---------------------------------------------
>Canis_familiaris
GCTCTATGGGAT-ACCCATAC-------CCAGCTGAGGATGGGT------GGGAATTT-CTC---TTCACTGCCAAGGGG
TTTTGTTTTGTTTTGTTTTTTTGTCTT-----------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------TTGGTATAA---GT
GTCCTTAATTTGGTATTACAGTCCATTTTTTCTCTTTTTTAAATTGAGGTATAATTG--------ACAT-TAACATTA-T
ATGAGTCTT-CGTGTTTACCATAAAGATTTTGATTTCTGTGTCCACTGCAAAATGATCCCCACAATAAGGCTAGTGAACA
TTGGTCACTTTACATAGTCGCAAAAGAATTTTTCAAAAATTTTTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC
TTTCTTTCTTTCTTTCTTTTTCTTTCTTTCTTTCT---------TTCGCTGTCATGTCTATTGCTCTAG---AATAAGTA
AATGTG-GCACTCA--GCTGGCTGTCACTTTACCAGATCAATTCC
>Felis_catus
GCTCCAGAAGACACCCCATGC-------CCATCTGAG---AGGGCCCCGGGGGAATAC-CTC---TTCACTATCATGGTT
TCATTGTTGTGTTTTGGTCTTTTTTTAAGATTGATTGATTGATTGATTGATAGAAAGCAGGGGCAGAGAAGGAGAGAAAG
AGAATCTCAAGCAGGCTCCACGCAGCACAGTGCAGAGCCTGACACAGGGCTCGAAATCATGAACCACGAGATCATGACCT
GAGCTGAAACCAAGAGTTGGGTACTTAACCAAGGGAACCACCCAGGTGCCCCTGTTTTTTTTGTCTTTGGCCTAA---GT
TTCCTTAATGTATTATGACAATTAAGTTGTTCTCTTT---AAATTGGGGTATAATTA--------ACAG-TAACATTA-T
ATTAGTTTT-GGTGTATACCATGA----TTCGGTATCTGTATCCACTGCAAAATGATCACCACAATAAGTCCAGTTAACA
TCTGTCACTTCACATAGTTACAGAGGAAACATT-----------------------------------------------
------------------------------TTTCC---------CCCCACGTCACGTGTAGTGCTTTAA---ATGAAGTA
AATGTG-GCACTCA--GCTGGCTGGCACTTTAGCAGATCAATTCC
>Manis_javanica
GCACCT----AT-ACCTACGC-------CCATCTGAG------TCGCTGGGGGAATAT-TGA---CTCAC----------
---------ATTGTGTGTGTGTGTGTGT----------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------GTGTTTAAA---AT
TTCCTTAGTTTATTATTACAACTCAT--------TTTTTTAAATTGAGGTATAATTG--------ATAT-TAATACTG-T
ATTCATTTCAGGTGTATAACATAATGA-TTTAACATTTGTGTACACTGCCATGTGAT-ACCACAATAAGTCTAGTTAACA
TCTGTCAC--CACACAGTTACAAAAAAAA---T-----------------------------------------------
------------------------------TGTTT---------TTCACTGTCATGTTTACTACTCTAA---ATTGAATA
AATGTG-GTACTCA--GCTGGCTGCCACTATACCAAATCAATTCC
>Sus_scrofa
ACTTCACGGGAT-TCCCATGC-------CCACCTGAG--TGGGTCCCTGGGGAAAAAC-CTC---TTCGCTGTCA-----
TTTTTGGGGGTTAGTTTCCTTACCATG-----------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------TTTTTCTAA-----
------------------------------------------CTTGAGTTATAACTG--------ACAT---ACATTA-T
ATTGGTTTCAGGGATACAACCGAATGA-TTCAATATTTATATACATTTTGAAACAATCGCTTCACAAAGTCTAGTTAACA
TCCATTTCTTTACAGAGTTACA--------TTT-----------------------------------------------
------------------------------GTTTT---------CTCACCGTCATAGCTATTGCTCTAT---ATGAAATA
AACACA-GCACTCA--GCTGGCTGCCGCTTTACCACATCAATTCC
>Bos_taurus
ACCCCACAGGAT-CCCCACGA-------CCATCTGAG--TGGGTCCTTGGGGAAACAT-CTC---TTCACTGTTA-----
--TTTCTTGGTAAGTTTCCTTAGTTTA-----------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------TTATTATAA-----
-----------------------------------------------------------TTCTTTTCATAAAACATTA-T
ACTGGTTTC-GGTATACAACATAATGA-TTCAATATTTGTATACATTTCTAAATGATCAATAGAATAAGGCTAGTTAATA
TCTGTCAATTCACATAAGTACAAAAAT-----------------------------------------------------
------------------------------TTTTT---------TTCACCGTCATGTTT-------------ATTGCATA
GACGTG-GCACCCA--GCTGGTTATTACTTTAACAAATCAATTCC
>Myotis_myotis
ACTCCTCAGGAC--CCGGCGC-------CCAGCTGAG--TGGGTCCTTGGGGGGT-GC-CGC---TTCACTGTCA-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------TTTCTTAAA-----
-------------------------------------------TTGAGGTATAATTGTTAGCATTATACCTAGCATTAGC
ATTAGTTTCAGGTGTACAACAAAATGG-TTCGATATTTGTACACATTGCAAAATGATCACCACAATAAATCTAGTTAGCA
TTCGTTACAA----------------------------------------------------------------------
------------------------------TTTTT---------TTCACTGTCCTATTTATTGCTCTAA---ATTAAATA
AATGTG-ACACTCG--GCTGGCTGCCACTTTGCTA-ATCAGTTCC
>Rousettus_aegyptiacus
ACTCCACAGGAT-ACCCGCGC-------CCATCCTAG--TGGGCCCCTGGGGGAATAC-CTC---TTCACTGTCA---AG
TTTATTTTTTTAAGTCTCTTTAGTTTA-----------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------TTATTACAA-----
--------------------------TTCTTTTCTTTTTAAAATTAAGGTATAATTG--------ACATGTAACATTA-T
ATTACTTGCAGGGGCACAACAAAATGA-TTTGATATTTGTACACGCTGCGAAATTATCATCACAATAAGTCCCACTAACG
TTTATTGCCTTACGCGGTTACAAAAGAACTTTT-----------------------------------------------
------------------------------TTTTT---------TTCACTGTCGTGTTTAT---TCTAA---ATTAAATA
AATGTG-ACACTCACCGCTGGCTGCCACT-TACTAAATCAATTCC
>Equus_caballus
ACTCCACAGGAC-ATGTGCAC-------CCATCTGAG--TGGGTCCCTAGGGGAACAC-CTC------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------GTCACCGTCACATTTATTGCTCTAA---ATTAAATA
AACGTG-GCACTCA--GCTGGCTGCCACTTTATCAGATCAATTCC
>Ceratotherium_simum
ACTCCATAGGAT-----ACAT-------GCACCTGAG--TGGGTCCCTGGGGGAACAC-CTC------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TTCACTGTCATGTTTATTGCTCTAA---ATTAAATA
AATGTG-GCACTCA--GCTGGCTGCCACTTTACCAAATCAATTCC
>Condylura_cristata
GC---ACAGGGC-ATTC--AG-------CCAACCAAG--TGGGTCCCAGGAGAAACAA-CGC------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TTTGCTGTCATGTT--TTTGCTGAA---ATTAAATA
AATGTGAGGACTCA--GCTAGCCGCCACTTTACTAAATCAATGCC
>Erinaceus_europaeus
ACTCCACAGGATAACCTCCACAGACAGACCATCTGAG--TGGGTCCCTGGAGAAACAG-CTC------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TTTGCTCTCGTGCTTGTTGTTCCAA---ATTAAATA
AATCTG-GCTCTCA--GCTAGCTTCCACTTAAGAAAATAAATTCC
>Homo_sapiens
AC-ACACAGGAT-GCCCATGG-------CCATCTCAG--TGGGTCCCCTGGGGAGCTACCTC------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------T-CACTGTCTTGTTTATTGCTCCAA---ATAAAATA
AATGTG-GCACTCA--GCTAGCCGCCACTTT-CCAAATCAATTCC



Dog309_LINE

>L1_CARN7_3END
--------------------------------------------------------------------------------
---------GACAGATGGTAACTAGACTTATTGTGGTGATCA-CTTCACAATGTATACAAATGTCGAATCACTATGTTGT
ACACCTGAAACTAATATAACATTGTATGTCAATTATACTCAAATAAAAAAA-----------------------------
------------------------------------------------------------
>Canis_familiaris
GGGGA--AACA------------TTGAGTTTTTTTCCTAAAGAAATAATCATTAGCCTT---A-ATAAAAATAA-GC-TC
TTATTT------------TAACTAGACTTACTGTGCTGATCA-TTTCACAATATATATAAATACCTACTCTTTATATTAT
CCACT-------AATGTAATGCTATATGTCAATTCTACCTCAATAAAAAT----ATGTAATTAA-AACTCA---------
GAATTT---ATCCC--AACATACATACATTTGTTCCTGTGTACACATATCTTCATTGAAA
>Felis_catus
GGGAA-ACATA--------------TTTTTTTATTCCTAAAGAAGTAATCATCAGACTT---A-ACAAAAATAA-GC-TC
TTACTT------------TAACTAGATTTATTGTGCTGATCA-CTT-ACAATATATACAGATACCTACTCTTTATGTTAT
CCACTTGAAACTAATATAATGTTGTATGTCAATTATACTTCAATAAAAAT----ACATGAATAAAAGCTCT---------
ATGTTC---ATCCC--AGCATATATACATTTGTTCCTATACACACATATCTTCATACAAA
>Manis_pentadactyla
GAAGG-AAACA-------TTGACAGACTTTTTTCCCCTAAAAAAATAATCATTAGACAT---AT--AAAAATAATAC-TC
TTATTT------------TAACTAAACTTATTGTGCTAGCCA-TTTCACAATATATACAAATATCTAATCATT---TTGC
ATACCTGAAAC--------TAATATAAGTCAATAATAGTT-AATAAAAAT--------AAATAA-GACTTG---------
ATATTT---ATCCC--AACACATATATATATGTTCCTAT--ACACATATCTTCATAGACA
>Sus_scrofa
GGGGG-AAGTGCTTTGTTCTGTGTGTG-TTTTTTTCCTAAAG----AATCACTAGACAT---AT--AAAAGTAAGGC-TC
TTATTT------------CAACTAGAGTTATTGTATTGATCA-TTT-GCCGTGTAGGCAAATATGGAATCATTATGCTGT
ACACCTTAAAC-----TAATGTTATAGGTCAATTAAACCGCCGTAGAGGT----AAATAATTGA---CTCA---------
ATGTT----ATCCC--A------------------------ACATATATCTTCATAGATT
>Bos_taurus
GGGGG-AAATG-----------CTTTATTTTCTTTTCTAAACAAATAATCACCAGACAT---ATATAAAAGTGGAGC-TT
TTATTT------------CAGCTAGATTTATTGTACTGATAA-TTTCACCATCTATATAAATGTGGAATCATCATGTTGT
ACATCTGAAAC----ATAATGTTATATGTCAATTATATCTCA--TATATT----ACTTATATAACATCTTAAACAGTAAG
ATGTT----ATCCC--A------------------------ACATATATCTTCATAGAAT
>Myotis_myotis
GGGGG-AAACA----------TTGGTGTGCTTTTCCCTAAAAAAGCAATTATTAGACTT---ATATAAAAATAAGGC-TC
TTATTT------------TAACTAGACTTATTGTGCTGATTA-TTTCACAGTATATAGAAATATCAAGTAATTATGTTAT
ACACTGGAAACT---AATGTGTTGTATATCAGTTATACCTCAATAAAAAT----AAATAAATAA-GGCTCA---------
---GTC---ATCCC-AATTGAACATATATATTTTCCTGAGCACACCTATCTTCATAGAAA
>Rousettus_aegyptiacus
GAGGG-AAAC------------------TTTTTTTTTTAAAGAAGTAATTATTAGAAAA---AT--AAAAATAAGGCTTT
TTATTT------------TAACTAGTCTTATTGTGCTGATCATTTTTACAATATATACAAATATCAAATCATTATGTTGT
ATGCCTGAAACT-ACATAGTGTTCTATGTCAATTTTACCTCAATAAAAAT----ATATAAATAA----------------
---------TTC----ACCAAATATACATACATTTCTATATACACGTATCTTCATAGAAA
>Equus_caballus
GGGAG-AAACT----------TGGGTGGTTTTTTCCCTAAAGAAGTAATGTTTAGACTT---ATATAAAAATAAGGCTCG
ATGTTT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------ATCCC--AACATATATACGTCTGTTCCTGTATACACATATCTTCATAGAAA
>Ceratotherium_simum
GAGGG-AAATA--------TGGGTGTG-TTTTTTTCCTAAAGAAGTAATCTTTAGACTT---ATATAAAAATAA-GCTGG
ATGTTT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------ATCCC--AACATGTATACTTATGCTTCTGTATACACGTATCTTCATAGAAA
>Condylura_cristata
AGAAG-AAATA--------TTGGTCTATTTTTTTTTTTAAGGAAGTAATCACTGAGTTT---AT--AAAAATTAGGCTGG
ATGTTT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------CTCCC--TACGTAGGAACCTATGTCCTT---TAGACACGTCTTCATAGAAA
>Sorex_araneus
GGTGG-AAATA-------------TTGGTTTTACCCCTAAAAAAGTAATCATTATAATT---ATATAAAAATATATCCCA
GTGTTT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------ATCCC--AACATACA------TGTTTTTGTAGACTTACGTCTTCATAGAAA
>Homo_sapiens
AGGAGAAAATG---------GTGTGGGCTCTTTTTTCTAAAGAAGTAATCATTGGACTT---ATAA--AAATAACACTTG
ATATTT--------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------ATCTGTCTGTATACACACACATACACTCATAAACACGTATCTTCATA-AAA



Dog310_LINE

>L1_CARN7_3END
--------------------------------------------------------------TAACNTTGTATGGTGACA
GATGGTAACTAGACTTATTGTGGTGATCA-----CTTCACAATGTATACAAATGTCGAATCACTATGTTGTACACCTGAA
ACTAATATAACATTGTATGTCAATTATACTCAAATAAAAAAA--------------------------------------
---------------------------------------------------------
>Canis_familiaris
ATT-----TCCCAGT--CAATACTGTTTGCAGTCATTTGTTT---GAAAAGTACGCATT--------------GGTGATG
GATGTTAACTAGACTTAACATGGTGATTGTTTGTTTTGGCAACCTATGCAAAGATTGAATCATTATGTTGTACACATGAA
ACGAATACGATGTTACATGTCAATTACATCTC--------------AAT--------------AAAAAATACATATT---
GG----ACAT-TGATA-TGAGCGAGGCATTGTCATAGCTTCTGGATACAACACGGGA
>Felis_catus
CTTTAATTTCACTCT--CAATATCGTATGCAATAATTTGTTT----GAAAGTATGTGTT--------------GGCAATG
GATGTTAACTAGACTGACCGTGGAGATTA-----TTTTGCAG----TACAAAGATTGAATCATTATGTTGTCCACCTGAG
ACTAATACTATGTTACATGTCAATTATATCTC--------------AGTTA------------AAAAAATACGTATT---
GT----ATTTTCGATATTGAGTGAGGCATTGTTCTAGCTTCTGGATACAACATGCAA
>Manis_pentadactyla
CTTTA-TTTCACTAT--CAATATCCCTTTCAGTAATTTGTTT----AAAAATATGTATT--------------GGTG-TG
GATATTAGCTGGACTTA-TATGTTGATCA-----TTTTGCAATATAGACAAATATTGAATCATTATACTCT----TTGAA
ACTAATGCAATGTTAGATGTCACTTATGTCTTGATGT--------------------------GCAAAGTAAGTATT---
GT----ACATTTAGTA-TGAGCCAAGCATCATTCTAGCTTCTGGATACAACATGGAA
>Sus_scrofa
CTTTAATTTCACTAT--CAATTTTCGTTTCAATAATTTGTTT----GAAAATATGTATT--------------CATGATG
GATATTAACAGGACTTACTGTGGTGATCA-----TTTTGTAGTATATACAAGTATGAAATCGTTATGTTGTACACCTGCA
ACTAATATAATGTTATATGTCAATTATATTTC--------------AATA-------------CAAATATATGTATA---
TGAATGACATTTAGTT-TGAGCCAGGCATTGTTTTAGCTTCTGGATACAGCATGGAG
>Bos_taurus
CTTTAATTTCGCTGT--AAGTATCCCTTTCAATAATTTGTTT----AAAAATATATATG--------------GATGATG
GATGTAAACTGGATTTACTGTGGTGGTCA-----TCTGGCAGTATATACAAATATCAAATCGTTATGTTTTGCACCTGCA
ACGAATATCATGTTATGTGTTGATTCTTTCCCTCCCTCCCTCTTTTTCTGTGTGTGTGTG---TGTGTGTGTGTGTA---
TGAGTGATGTTTAGTA-TGGACCAGGTATTGTTTGAACTTCTGGATACAGCATGGAG
>Myotis_myotis
TCT----TTCATTAT--CAGTATCCTTTGCAATAATGTGTTT----AAAAATATGTATT--------------GGTAATG
GATGCTAATTAGACTTATTGTAGTGATCA-----TTTCACAATAAATACCAATATTCAGTCATTATGTTGTACACCTGAA
ACTAATACAATGTTACTTGTCAATTACCTCTC--------------C----------------ATAAAAAATGAATT---
GT----ACATGTACTA-TAGGCCAGGCATTGTTCTAGCTCCTGGATACCACATGGAA
>Rousettus_aegyptiacus
CTGTAGTTTCACTAT--TAATATCCTACATAATAATGTGCTT----AAAAACAT-------------------GGTAATA
GATGTTAACTAGACTGACTTTGGTGATCA-----TTTCACAATATATACAAATTTTGAATC---ATGTTGTATACCTGCA
ACTAATATAATGT----TGTCAGTTATATTGC--------------C----------------ATTAAAAATATATC---
GC----ACAT-TAATA-TGAACCAGGCATT-------------GATAAAGCAT-AAA
>Equus_caballus
CTTTAATTTCACTAT--CAATATCATTT-CGCTAATTTGTTA----AAAAATATGTATT---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
GT----GCATTTAACA-TGAACCAGGAGTTGTTCTAGATTCGGGATAAAATACGGAA
>Tapirus_indicus
CTTTAATATCACTAT--CAATATCTTTTTCAATAATTTGTTT----AAAAATATGTATT---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
GT----ACATTTAATA-TGAGCCAGGCATTGTTCTAGCTTCTGGATACAACTTGGAT
>Condylura_cristata
CTTTAAAGTCACTCT--TGATATCCTTTTCAAGCAGTTATGT----TAAAATATATTTT---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
GC----ACATTTTATA-TGCACCAGGCATT-TTCTGGCTTCTGGATGCAACA-GGGT
>Solenodon_paradoxus
CTTTAATTGCACTAT--CAGTATTCTTTTCAGAGCTGTATTT----TAAAACATGTATT---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
GT----ACATTTAATA-CGAAC-AGACACTCTTCTAGCTTCTGAATACAACATGGGT
>Cavia_porcellus
CTTTAACCCCAGTCCCACAACATTCTTGTCTACAATCTGGTT----CATAATGTTTTAT---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
GT----TTATTTAATA-TGAGCCAGGCATAGCTCTAGCTTCTGGATACAACACGAGA



Dog311_LINE

>L1_CARN7_3END
--------------------------------------------------------------------------------
-------TTTTTTTATTTGAG-TATAATTGACA--TACAATGTTATATTAGTTTCAGGTGTACAACATAGTGATTCGACA
TTTGTATACAT-----------------------------------TGTGAAGTGATCACCACAATAAGTCTAGTTACCA
TCTGTCACCATACAANGTTANTACAAT-----------------------------------------------------
-------------------------------
>Canis_familiaris
GTGGTGGATACTGCTGACAAAGAACTTGAAGAAGCAAAGGTATTACATTT---ACCACTAAT-AGGA--------ATTTT
TATT--------------G--TTGTAACTGACA--TATAGCATTATATTAGCTCGAGGTGTACAATATGAT-------TA
TTTCTATATAT-----------------------------------TGTGAAATGATCACTGCAATAATTCTAGTTAGCA
TTGG--------------------------AC----TACTGATCAGGATTTTAATT---CTACTTTAAAC-ATCATGTA-
------AGTGCA--ATGGAAAAAGTGACATT
>Felis_catus
GTGGTGGATACCGCTGACAAAGAACTTGAAGAAGCAAAGGTATTACATTT---ACCATTGAT-AGGA--------TTTTT
TATT--------------GAGTTACAATTGACATGTATAGCATTATATTAGTTCTAGGTATATGACAAAATGATTCACTA
TTTGTACATAT-----------------------------------TGTGCAATAATCACTGCAATAATTTTAGTTAGCA
TCTA--------------------------AC----TACTGATCAGGATTTTAATT---CCTCTTTAAAC-ATCATATAA
TTATTAGATGCAGTGTGGAAAAAGTGACATT
>Sus_scrofa
GTGGTGGATACTGCTGACAAGGAACTTGAAGAAGCAAAGGTATTAGATTT---ATCACTGATGAGGT--------TTTTT
AATT--------------GAGGTATAATTGATA--TACAACTTTATATTAGTTTCAGGGGTACAACCTAATGATTCAATA
CTTGTATATAT-----------------------------------AGCAAAATGATCACCACAGTAAGTCTAATTAACA
TCCA--------------------------AC----TACTGATCAGGATTTTTGTT---CTGCTTTAACC-ATCATACAA
TTATT-AATGCA--ATGGAAAAGGTGACATT
>Bos_taurus
GTCGTGGATACGGCTGACAAGGAACTTGAAGAAGCAAAGGTACTGGATTT---ATCACTAATCAGGT----TTTTTTTTT
AATT--------------GAGGTATAATGGACA--TATTACATTATGTTAGTTTCAAGTGTACAACATAATGAATCGATA
TTTGTATGTAT-----------------------------------TGCAAAATAATCACCATAACAAGTCTAGTTAACC
TCCA--------------------------ACTAGTTACTGATCAGGATTTTAGTT---CTA-TTTAAAC-ATCATGCGA
TT----AATTCA-------------GGCTTC
>Myotis_myotis
GTGGTGGATACTGCCGACAAGGAACTTGAAGAAGCCAAGGTATTAGACTT---ACCACTGAT-AGTTTTTTTTTTTTTTA
AATT--------------GATGTATAATTGACA--TATGGCATTATATTAATTTCAGGTGTACAACATAATGATTCAATA
TATATATATATATATATATATATATATATATATATATATATATATATATAGTGAAATGACTACAATAATTCTAGTTAACA
TCTG--------------------------AC----TATTGATCAATATTTTAATT---CTACTTTAAAT-ATCATGTAA
TTATTAAATGCA--AAGGAAAAAGTGACATT
>Rousettus_aegyptiacus
GTGGTGGATACCGCTGACAAGGAACTTGAAGAAGCAAAGGTATTAGATGT---ACTGCTGATCAGAA-----TTTTTGTT
AACT--------------GAGGTATAATTGACA------------TATTAGCTTCAGGTATACAACATAATGATTCAATA
TTTGTATATAC-----------------------------------TGTGGAGTGATCAC---AATAAGTCTGTTTAACA
TCCA--------------------------AC----TACTGATCAGGATTTTAATT---CTACTTTTAAC-ATCCTGTAG
TTACTAAATGTA--ATGAAAAAAGTGACATT
>Equus_caballus
GTGGTGGATACCGCCAACAAGGAACTTGAAGAAGCAAAGGTACTAGATTT---ACCACTGATCAGGA---------TTTT
AATT----------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------CTGCTTTAAAC-ATCATGTAA
TTATAAAATGCA--GTGG-AAAAGTGATATT
>Ceratotherium_simum
GTGGTGGATACTGCCGACAAGGAACTTGAAGAAGCAAAGGTACTAGATTT---ACCACTGATCAGGA---------TTTT
AGTT----------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------CTACTTTAAAC-ATCATGTGA
TTGTTAAATGCA--GTGGAAAAAGTGATATT
>Condylura_cristata
GTGGTGACTACTGCGGACAAGGAACTTGAAGAAGCAAAGGTACCAGATTT---ATCATTGATCAGGA---------TTTT
AATT----------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------GTAATTTAAAAGATCATGTAA
T----AAGTATA------------TGACAGT
>Erinaceus_europaeus
GTGGTGGATACTGCTGAAAAGAAACTTGAAGAAGCAAAGGTACTAGATTT---A-AACTACTCAGGA---------TGTT
GATT----------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------CTAATTTAGAC-ATGATGCAA
CTATTATGTGCA--GTGAGAAAAGTGACATT
>Homo_sapiens
GTGGTGGATTCCGCCAACAAGGAACTTGAAGAAGCCAAGGTACCAGATTT---ACCACGGATAAGGA---------TTTT
AATT----------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------TTACTTTAAAC-ATCATGTAA
TTTTTAAATGCA--ATGGAAAAAGTAGCATT



Dog312_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
-------GGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGTACAG
CATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGA-TCTTAAGTGTTCTCACCACA
CACAA---AAAAAT--------------------------------GGTAACTATGTGAGGTGATGGATATGTTAATTAG
CTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTAT
TTGTCAATTATACCTCAATAAAGCTGGAAAAA------------------------------------------------
----------------------------------------------------------------
>Canis_familiaris
GTTCCCTCCTCGTGCTTATCTGTATCCAGTATTCATTCTGGCAC---------------AAAATC---ATGATTCAGAAG
ACGG-------------CAGTCAAAAGGTATAAACCTCCAGTTAC--AAGATAAATAAGTACCAGGGATGTAATGTATAA
CCTGATAACTATAGTTCGCACTGCCGCGTGGTATGTAGGAAT---GTTAAGAGAGTAGATTCCTAAAAGTTCTCAGCAC-
---AAGGGAAAAACCCTTCTTCTTGTTCTAC--TTTTCTTTTTT---GTATCTGTATGAGATGATGG--ATGTT-----G
ACTTATCGTGGTAATCACTTCACC--ACATATGTAGATCACAGCA-TATGCTGCCCACCTTAAACT--TATCGTG--TCC
ATGTCAAGAATATCTCCAGAAAACTGGGGAAATA---AAGGTT---AAGAAGA---GAGGAA------------ACCGTA
G----------AGGAGGA----ACG--GACACTCGCCTCG----------CCACTGATGCCTAG
>Felis_catus
GGTCTCTCCTAGTGCTTATCTGTATTCAGTATTCATTTTGGCAC---------------AAAGTT---ACAATTCAGAAT
AAGG-------------CAGCCAAAAGGTACAAACTTCCAATTAT--AACATAAATAAGTACTAGGGATGTAACGTATAT
CCTGATGAC-GTAGTTAACACTGCTGTATGGTATATATGAAA---GTTGAGAGTATAGAATTATCAAAGTTTTCATCAC-
---AAGCAAAAAATTTCTTTTCTTTTTCTAC-----TTGTTTTT---GTATCTATATGAAATGTTGG--ATGTT-----A
ATTTAATGTGGTAATCATTTCACA--ATATATGTAGGTTAAATCATTATGGTGTATGCCTTAAACTCATATAGTG--TCT
ACGTTAATTACATCTCAGTAAAACTGGGGAAACA---AAAATT---AAGAAGA---GAGGAA------------AAGGTA
G----------AGAAAGAACTGACT--GACATAGTTCTCTCC--------CCG--GGTGCCCAG
>Manis_pentadactyla
GTTACGACCTAGTGCTTATCTGTATTTGGTATTCATTTTAGCCC---------------AAAGTT---AAGATTCAGAAG
AAGG-------------CTGCCAAAAGGTACAAACTTCCAGTTAT--AAGGTAAATAAGTAGTAGGGATGTAATGTACAA
CACAATGACTATAGTTGAGACTACTGTATGACATATA-----GTTGTCAAGAGAGTA-AATTCTGAGAGTTCTCATCACA
GGGGAAAAAAAATTATTTTTCCATT-------------TTTTTT---ATGTCTATATGAGAAAATGG--ATATTAATTAA
GCTTATTGTGATAATCATTT---A--TGACATGTAGTTTAAATCATTATGCTACATATATTAAGCTTCTACAGTGC-TGT
GTATCAACTATATTGTAATAAAACAGGGAA---A---AAGATT---AAGAAGA---GAAGAA------------------
----------------------ACT--GACAGACTTCTCTCT--------CCATGGATATCTAG
>Sus_scrofa
GTTCCCACCTAGTGCTGTTCTGGATTCAGTATTCCTTTTGGCAC---------------AAAG-A---AAGACTCAGAAG
AAGG-------------TAGTCAAAAGGTGCAAAATTTCAGTTAT--AAGATAATTAGGTCCTA-GGATGTAAAGTAGAA
CCTGATGGGTACAGTTAACCTTGCTGTATAATATATATGACTGTTCTTT-GAGAGTA-AATCCTAAGGGTTCTAATCAC-
----AAGGGAAAATTTTTTTTCTTTTTCTAT-------TCTTTT---GTATCCAGATGAGATGATGG--ATGATAACTAA
AATAACTGTGGTAATCGTGTCAC---ATTCTTAAAAACCAAATCATTATGCTGTACACCTTGAACGTGTACAGTGC-TGT
ATGTCAATTGTGTCTCAATAAAACCGAGGGA--A---GAGATT---AAGAAGA---AAGGAA------------AAGACA
G----------AGAAGGAACTGATT--GACACACTTCT------------CTACTGATACCTAA
>Tursiops_truncatus
GTTCCCTCCTAGGGCTTCTCTGAATTCAGTATTCATTTTGGCAC---------------AAACTT---AAGACTCATAAG
AAGG-------------TAGTCAAATGGTACAAAATTCCAGTTAT--AAGATAATTAGGTACT-GGGATGTAATGTAGAA
CCTGATGACGATAGTTAACACTGCAGTATGATATATACAACAGTCGTTAAGAGAATA-AATCCTAAGAGTACTTGTCACT
CAGCACGGGAA------TTTTTTTTTTCTAC--TTTTTGTTTTT---GTACCTATGCGAGAGGATGC--ATGTTAACTAA
GGTTATTGTGGCAATCATGTCACA--ATACATGTAAGTCGAATCATTATGCTGTACACCTTGAACTTGTACAGTGC-AGT
ATGTCAACTGTATCTCAATAAAACTGGAAAAAAA---AAGATT---AAGAAGA---GAGGAA------------AGGACA
G----------AGAAGAAAGTGATT--GACACACTTTTCTCT--------CTGTTGATAACTAG
>Equus_caballus
GTTCTCTCCTAGTGCATATCTGTGTTTAGTGTTCATTTTGGCACA--------------AAAGTT---AAGATTCAGAAG
AAGG-------------TGGTCAGAAGGTACAAACTTCCAGTTGT--AAGATAATTAAGTACTAGGGATGTAATATAGAA
TGTAATGACTGTAGTTAACAGTGTCATATAGTATATATGAAAGTTTTTAAGAGAGTA-AATCCTAAGAGTTTTCACCAC-
---AAGGGAAAATTTCTTTTCCTTTTTCTAC-------TTTTTT---GTATCTCTATGAGATGGCAG--ATGTTTACCAA
ATTTATTGTGGTAATCATTTCATG--ATATATGTAAGTGAAATCATTGTGATATACATCTTAAACTTATACAGTGC-TGT
ATGTCAATTATATATCAATAAAACTAGGAACAAA---AAGGTT---AAGATGA---GAGAAA------------AGGGCA
G----------AGAAGGGACCAACA--GACACACTTCTTTCT--------CCA--GATGCCTAG
>Ceratotherium_simum
GTTCTCTCCTAGTGCCTACCTGCATTCAAGGTTCATTTTGGCAC---------------AAAGTT---AAGATTTAGAAG
AAGG-------------CAGTCAAAAGGTACAAACTTCCAGTTAT--AAGATAATTAATTACTAGGGGTGTAATGTACAA
CATAATGACTATTGTAAACAGTGCCATATAGTATATATGAAAGTTGTTAAAAGAGTA-AATCCT--AAGTTTTCACCAC-
---AAGGGAAAAAATTTTTTTCTTTTTCTTTCTATTTTTTTTTTTCGGTATCTATATAAGATGAGGG--ATGTTAACCAA
ACTTATTCTGGTAATCATTTCATA--ATGTATATATGTCAAATCATTATGTTGTATGCCGTAAACTTAGACAGTGC-TAT
ATGTCAATTATATCTCAATAAAACTGGGAAAAAA---AAGATTAAGAAGAAGA---AAGGAA------------AGGGCA
G----------AGAAGGAACTGACA--GACA--CTTCTCTCT--------CCACAGATGCACAG
>Myotis_myotis
GTTCTCTTCTAGTGCTCATCTGT-----GTATTCATTTTGGCAT---------------AAAGTT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------AAGATTCAGGTGAAGG---GAGGAA------------AGAGCA
G----------AGGAGGAACTGACT--GACATACTTCTCTCT--------CCACTGATGC-TAG
>Rousettus_aegyptiacus
GTTCTATCCTAGTGCTTAT-----TTTAGTATTTATTTTGGCAC---------------AAAGTG---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------AAGATTCAGAAGAAAG---GAGGAA------------AGAGCA
G----------AGAAAAAACTGAAT--GATA---TTCTCTCT--------ACATTGATGCCTAG
>Condylura_cristata
GTTCCCTCCAATTGTTTGTCTGT-----GTATTCATTTTGGTGG---------------ACAGTT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------AAGAATCAGAAAAAAA---GAG---------------AGGACA
G----------AGAAGGAACTGACT--GACA----TCTCTTT--------TCACTAATGCCTGG
>Uropsilus_gracilis
ATTCTCACCTAGGACTTGTCTGT-----GTCCTTATTTTGGTGC---------------AAAGTT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------AATATTCTGAAGAAGA---GAGGAAAGGACAGAAGACAGGACA
GAGGAGAGGATAGAAGGAATTGACT--GAC---CTTCTCTCCTGCTTAGATCACTGATACCTAG
>Homo_sapiens
ATTATTCCCAAGTGCTTATCTGT-----GTTTTCATTTTGGCACAAATTTTTATTCTACAAAGTT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------AAGATTCAGCAGTAAA---GACAAA------------AGGGCA
G----------GGAGGGAACTTACTCTGATATATTTCTTTCT--------CAGCTGATGCCTAG



Dog315_LINE

>L1_CARN7_3END
--------------------------------------------------------------------------------
----------------------------------------------------TTTTTTTATTTGAG-TATAATTGACATA
CAATGTTATATTAGTTTCAGGTGTACAACAT-------------------------------------------------
---------------------------------------------
>Canis_familiaris
CATTTTAAATATGTGGGACCTGGC---CAGAAATG-GA-CTCTGTTGGA-TTTTA---CAAAAATTTACATTTCC-----
-------------CTTTTTTTATTTTTTAAAGTTAAAACATTTTTT--------------ATTAAGGTATAATAGACATA
CAACGTTATATTAGTTTCAGA-------------TATGCTTTATATTTCT---AA-GGATTTATTGGCTTTCAGG-AAA-
CAGTCAGGGTGGGAAAAGTTT------------AGAAATGTAGTT
>Felis_catus
CATTTTATACATGTGGGACCTGAC---CAGAAA--------CTGTTGAA-TTTTG---TAAGA-CTTAAATTTCT-----
-------------CTTTTTTTATTTTTCAAAGTTCGAAAGGTTTTC--------------ATTAAGGTATAACTGGCATA
TAACAT---ACTAGTTTCGGG-------------TAAAATTTATATTTCT---GA-GGGTTTGTCTGCTTTCAGG-AAA-
CAGTCAAGGTGGGAAAAGTTT------------AGAAATGTAGTT
>Manis_pentadactyla
TATTTTATATATGTAGGACCTGAC---CAGAAATATGA-TCCTATTGGG-TTTTA---TAAGA-TTTATCTATTT-----
--TTTAATTAAAATTATTATTATTATTATTATTATTATTATTATTA-------------TACTGAGATATAATTGGTATA
TAACATTGTATCAGTTTCAGG-------------TAATATTTATGTTCCC---AA-GGGATTATCTTCCTTCAGG--AA-
----CAGAGTGGGGAAAGTTT------------AGAAATGTAGTT
>Sus_scrofa
CATTTTATATACATGGGACCTGAC---CATACATT-------TGTTGGATTTTTA---TGAGA-TGTATGTCTTT-----
----------------TACACATTTTTAAAATTAAAAAAATTTTTT-----------AAAATTGACTTGTAATTGGCATA
TGACAT--TGTTAGTTTCACG-------------TAAGATTTATATGGTT---AG-GGGTTTATCTGCTGTTACG-AAA-
----CAGGGTGGGAAAAGTTT------------AGAATTATAGTT
>Tursiops_truncatus
CATTTTACATATGTGGGACCTGAC---AAGAGATTTAG-CTCTATTGGA-TTTTA---TCAGA-TTTATACTATC-----
-------------TTTTAAACACTTTTTAAAATTTAAAATATATTTAAATTATTTAAAAAATTGAATTATAATTGGCATA
TAACATTATGTTAGTTTCAGG-------------TAAGATTTATATTGTT---AA-GGGTTTATCTGCCTTTAGG-CAA-
----CAGGGTGGGAGAAGTTT------------AGAAATGTAGTT
>Myotis_myotis
CAT-------ATGAGGGACCTGAC---CAGAAGTGTGA-CTCTGTTGGA-TTTTA---TAAGA-TTTATATATCT---AT
TTTATAATTAAAAGTGTTTTAATGTTT----------AAATTTTTT--------------ATTGAGAAATGATTGGCATA
TAGCATTATGTGAATTTCAGG-------------TAAGAGTTCTATTTCC---AA-AGGTTTATCGACTTTCAGG-AAA-
CAATCAGCATAGGAAAAGTTT------------AAAAATGTAGTT
>Rousettus_aegyptiacus
CAT-TTATATATGAGGGACTCGAC---CAGAAATTTGA-CCCAGTAGAA-TTTTA---TAAAA-TTTGTATTTCT-----
--TTTTATAATTAATCTTTTTAATTTT----------TAATTTTTT--------------ATTGAGGAATAATTGGCATA
TAACATTATAT----TTCAGG-------------TAAGATTTATATTTCT---AA-AGGTTTATCTACCCTCAGG-AAA-
----CAGATTGGGATTAGTTT------------AGAAATGCAGTT
>Equus_caballus
CATTTTATATATGTGGGACCTGAC---ATGAAATTCAA-CCCTGTTGGA-TTTTA-------------------------
--------------------------------------------------------------------------------
----------------------------------TAAGATTTATATTTCT---AA-GGGTTTATCTGCCTTCAGG-----
-----------GAAACAGGTT------------AGAAATGTAATT
>Ceratotherium_simum
CATTTTATAAATGTGGGACCTGAC---GTGAAACTTAA-CCCTGTTGTA-TTTTA-------------------------
--------------------------------------------------------------------------------
----------------------------------TAAGATTTATATTTCC---AA-GGGTTTATCTGCCTTCAAGAAAA-
---------------CAGTTT------------AGAAATGTAGTT
>Condylura_cristata
CTTTTTGTACATGTAAGACCCCACAAGAAGAAATTTGA-CCTTGTTGGA-TTTTA-------------------------
--------------------------------------------------------------------------------
----------------------------------TAAAATTTACATTTTT---AA-GTGTATTTCTGCCTTCAGGAAAA-
TAGTCAGGACAGGAATAGTTTAGAAGTTCAGAAAGAAATGTAGTT
>Sorex_araneus
TTTAAAATATATGTGGGACTTGAC---AAGAAATTCTG-CCTTGTTAGA-TTTTA-------------------------
--------------------------------------------------------------------------------
----------------------------------TAAGATT---ATTTTT---AAAGGGTTTATCTGCCTAAAGG-----
-------GGTAGGGAAAGTTT------------AGAAATAT--TT
>Cavia_porcellus
TTGTTTACATACGTAAAAC-TGTC---ACAAAATTTGACCCCTGTTGGA-TTTTT-------------------------
--------------------------------------------------------------------------------
----------------------------------TAATATTTATATTTCT---AA-G------TTTGTATTCAGGAAAAC
CACTCAGGA--GGAAAGGTTT------------AGAAATGTAGTT



Dog318_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------TTTTTCCAGCTTTATTGA
GGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATATACGTATACATTGTGAAATGA
TTACCACAATCAAGC----TAATTAACATATCCATCACCTCACATAGTTACCATTT------------TTTTGTGTGTGG
TGAGAACACTTAAGATCTACTCTCTTAGCAAATTTCAAGT----------------------------------------
------------------------------
>Canis_familiaris
GATAA-CTCTGCCTGTAGGGCACAACTGGTGAATCAATTAATCCATCCGTCCATT---CATTCACTTTTTTTTGTTCTTT
TTTTTTTAAAGACTTTATTTATTCATGAGAGACACAGAGAGAGGCAGAGACATAGGGAGAGGGAGAAGCAGGCTCCATGT
GGGGAGCCCGATGCAGAACTAGATCCTAGGACCCAGGATCATGACCTGAGCCAAAGGCAGATGCCCAACAGCTGAGCCAT
CCAGGTGCCTCTTTT---TTTTTGTTCTTGAA-CTCCCTCAAAT------CTTCTTTTTTCCCATTTCCACCTTTATTGA
GATATAATATAT-----AACGTTGTGTAAGTTTAAGGTGTACAACATATTGGTTTGA------TATATATTGCAAAATGA
TTACCACCATAGCTT----TATCTAATACCT-CATCACATCAATTAAAACACCTCC------------CCTTTTTTGTGG
GGATAACATTTAAGATCTACTTTCTTGGC-AAC----------CATTCACATTTATT---GAATGCTTTCTACATGCCAA
GTCCTGTGGGAGAGGAAGACAT-GGTATCA
>Felis_catus
GATAA-GTCTGCGCATAAGGTACAATTAGTGAATCA----ATTCATCCATCCATC---TGTTCACATT------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------TATT----TTTTGTTCTTGAAGCCCCCTCAAAT------CTTCTTTTTTCCTGTTTCTACCTTTCTTGA
GATATAATTGATCTAT-AACATCGTGTAAGTTTAAGGTATACAACGTATTGGTTTGA------TATATGCTGCAAAATGA
TTACCAGCATAGTTT----TAGCTAATACCT-CATTCTGTTGATTAAACATACCACCCCCCCCCCCAACCTTTTTTGTGC
TGAGAACATTTAAGATCTACTTTCTTAGC-AAC----------CATTCGCATTTATT---GAATGCTTCCTGCATGCCAA
GCCCTGGGGGTGCAGAAGAAGT-GTTCTCC
>Manis_pentadactyla
NNNNNNNNNNNNNNACAGGATACAACTAATGAATCA----ATTCATCCATCCATT---CTTTCACATT------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------TACT----TTCTGTTCCTGAAGCCCTCTCATAT------TTTTTTTTTTGCTGTTTCTAGCTTTATTGA
GATACAACTGATATAT-AACATTGTGTAAGTCTAAGGTGTACAACATATTGTTTGGATACAC-CATATATTGCAAAATAA
CTGCTACCAAAGCTT----CAGCTAATGCTT-TTTCACATCACTTAAATATCATATGGTATGTGTGGTATGTGTGCATGG
TGAGAACATTTAAGATCTGCTCTCCTAGC-AAC----------CATTCACATTTACT----AGTGCTTCCTCCATGCCAG
GCACTGCGGCAGAGGAAGATGCCAGTATCA
>Sus_scrofa
GATAA-CTCTGCCCAAAGGATGCAATTCATCC--------ATCCATCCATCCATC---CATTCACAT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------TT-----TTTGTTCTTGAAACCCCTTCATGT----CTTTTTTTGGGTGCTGTTTCCAGCTTTATTGA
GCTCTAATTGATACAT-AACATTGTGTTTGTTTAAGGGGTACAACCTATTGATTTTATAAACTTACATATTGTAAAATGA
GGACTCCCATGGCTT----TAGCTAACACCT-CTTCACATCACCTAAATGCCTTTGTGTGTGT-----GTGTGTGTGTGG
TGAGAAAGTTTATGATTTACTCTCCTAGC-AAA----------CATTCACATTTATT---AAGGGCTTCCTATATGTCGT
GCACCATGGGGGCAGAAGACACACATATTA
>Bos_taurus
GATAA---CTGCCCACTGGATACAATTAATAA--------ATCCATCCATCCGTC---CATTCACATT------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------TATT---TTTTTGTTCTTAAAGCCCCCTCATATACTTTTTTGTGTGTATGCTGGTTCCAGCTTTACTGA
GCTAAGACTGATATAT-CACATTGTGGTAATTTAAGGGGTATAACCTATTGATTTTATGCACTTACATACTGTAAAATGG
TGACCAGCATAGCTTAGTATGG-TGAAAGCT-TATCACATCACTTAAATAAAAT--CTTTTTT-----TTTTTTTGGCAC
TGAGAATGTTTAAGATCTACCCTCTTAGC-AAC----------CATTCACATTTATT---GAGGGCTTCCTATATGCCAG
GCACTATGGGAGCAGAAGATGCAAGTATTA
>Equus_caballus
GATAA-CCCTGTCCACAGGATACAATTAATGAATCA----ATTCATCTATCTATT---CATTCGTATT------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------TATT----TTTTGTTCTTAAAGCCCCCTCATCT-----TTTTCTTTTTTGCTGTTTCCAGCTTTACTGA
GATATTATTAACATAT-AACATTGTGTAAGTTTAAGTTGTACAATGTATTGACTTGATACCCTTATATATTGCAGAATGA
TTAGCACC-TAGTGT----TAGCTAACATCT-CATCACATCACTTAAATA--------GCATT-----TCTTTTTCGTGG
TGAGAGCATTTAAGATCTACTCTCTCACCAAAT----------CATTCATATTTATT---GAGTAC-TGCTACATGCCAA
GCACTGGGGGAGCAGAAGACACAAGTATCA
>Ceratotherium_simum
GATAA-CCCTGCCCATAGGATACAATTATTTAATCA----ATTCATCCATCCATT---CA----CGTT------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------TATT----TTTTGTTCTTGAAGCCCCCTCATAA-----CTTTTTTTTTTGTTGTTTCCAGCTTTATTGA
CATATAATTCACATAT-AACATTATGTAAGTTTAAGGTGTAGAATGTATTGATTTGATACACCTATATATTGCAAAATGA
TTACCACC-TAGCTT----TAGCTAACATCT-CATCACATCACTTAAATA--------TTATT-----TCTTTTTTGTGG
TGAGAACACTTAAGATCTACTCTCTTAGC-AAT----------CATTCATATTTACT---GAATGCTTGCTATATGCCCA
GCACTGTGGGAGCAGAAGACATAAGCATCA
>Myotis_myotis
GATAA-CTTTGCCCACAGGATTTGATTAATGAATCG----ATTCACCCATCCATC-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------CATTCACTTTTATT------TGCTTCTTATATGCCAA
GCACTGTGGGAGCAGAAGATATAAGTGTCA
>Rousettus_aegyptiacus
GATAA-CTTTGCCTGCAAAATACAATCAATGAATCA----ATTCATCCATCCATA-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------CATTCTCATTAATC---AACTGCTTTCTCAATGCCAA
GCACCATGGGAGTAGAAGACACAAGTATCA
>Condylura_cristata
AACAGTTTCTGGCCAGAGGACACCATTAATGGGTCA----TTTCCTCTATCCATC-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------CACTTACATTTATT---GAGTGCTTCCTGTATGCCCA
-CATTGTGGGAGTGGAAGACACCAGTATCA
>Solenodon_paradoxus
GAGAG-TTCTGTCCACAGGAT---GTAAAAGAATCA----TTTC----ATCCACT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------CATTCCCTTTTATA---GAGTCCTTCATATATTCCAA
GCACTGTGGGAACAGAGGTTCCAAGTATCA
>Homo_sapiens
GATAA-CTATGCCCACAGGGTACAATTAATGAATTA----ATTCATCAATCCACT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------CATTCACATTTATC---GAATGCTTCCTGTGTGCCAA
GCACTGTGCGAGTAGAAACCACAAGAATCA



Dog319_LINE

>L1_CARN7_3END
--------------------------------------------------------------------------------
----TTTTTTTATTTGAGTATAATTGACATACAATGTTATATTAGTTTCAGGTGTACAACATAGTGATTCGACATTTGTA
TACATTGTG-----------------------------------------------------------------------
-----
>Canis_familiaris
GGTTCAATAGCTGCTAACTG-TTTATTTTAATTATTGTT----TGTTATTATTATT---GCAAACTATAGTTCTTT---A
AAAA--AGCTTATTGAGGTATAATTGATGTAC---ATGATATT-TTTTTAAGTGTATAACATAATGATTCAATATCTGTA
TA----------ATAAACCATATTTACTT---ATAGTCTATGGGCTACTC-AGAAAAA--AACCCAGATGTTTCATTGGC
TCTGA
>Felis_catus
GGTTCAATAGTTGTTAATTG-TGTATTTTAATCATTGTT-TTTTATTATTATTATT---GTAAACCATATTTCTTT---A
AAAA--TTTTTATTGAGGTATAATTGATGCAC---ATTATATT-ATTTTAGGTGTACAACCTAATGACTCCATATTTATA
TA----------ATAAACCATATTCCTTT---ATAGCCTACAGGTTACTT-AGAAAAA--AACCCAGATGTCTCATTGGC
TCTGA
>Manis_javanica
GGTTTAATAGCTGCTAATTA-TTTACTTTAATTATTATT----GG-------TATT---ATAAGCCATATTTCTTA---A
AAAATTTTTTTGTTGAGGTATATTAGACACACAATATTATATTAGTTTCAGGGATACAGTATAATGATTCAATACTTGTA
CA----------ATAAACCATATTTCTTT---ATAACCTGTGGACTACTT-GGAAAAA----CTTAGATGTCTTGTTAGT
TCTGA
>Sus_scrofa
GGTTCAGTAGCTGCTAATTG-TTTATTATGG-----------------------TT---GTAAACTATC-----------
---------TTATTGGGGTATAGGTGACATACAACATTATATTAATTTCAGGTATAGCGCATAATGATTCAGTATTTGTA
TA----------ATAAACCATATTTCTTT---ATAGTCTGTGGCCTACTT-GGGAAAA--AACCTAGATGTCCCATCAGT
TTTGA
>Bos_taurus
GGTTCAATAGCTGCTAATTG-TTTATTTTAGTT-----------------ATTATT---GTAAATCATA------T---A
AAAT--ATTTTATTAAGGTAGTATTGACACACGACATTATATTAACTTCAGATACACAACATAACGATTCTGTAACTATA
------------GTAAACCATATTTCTTT---ATAGCTTGTGGACTACTT-GGGGAAA--AGCCTAGATGTCCTGTTGGC
TCTGA
>Myotis_myotis
GGTTCAATAGCTGCTAATTA-TTTACTTTCATTATTGCT-------TATTATTAGT---GTAAAC-TTATTTCTTA----
AAAA--ATTTTATTGAGGTATAATTGACATAATACATTATATTAATTTTAGGTATCCAACATAATGATTTGATATTTGTG
TA----------ATAAACCATATTTTTTT---ACAGCTTATGGACTACTT-GGAAATA-AACCTTAGATGTCTTGTTGGC
CCTGA
>Rousettus_aegyptiacus
GGTTTAATAGCTGCTAATTGTTTTTTTTTAATTATTGTT-------TATTATTAGT---ATAAACCATATTTCTTT----
AAAA--TTTTTATTGTGGTATAATTGATATAC---ATTATATTAATTTCAGGTGTACAACATAATGATTCCATATTTATA
TA----------ATAAGCCAGATTTCTTT---ATAGCCTGTGCACTACTTGAAAAAAAAAATCTTAGCTGTCTTGTTGGC
TCTGA
>Equus_caballus
GGTTCAATAGCTGCTAGTTA-TTTATTTTAATTATTGCT----CATTATTATTATT---GTAAACCATATTTCTTT----
--------------------------------------------------------------------------------
--------------------------------ATAGTCTGGCAACTACTTGGGAAAAA--GCCCTAGAGGTATTGTTGGT
TCTAA
>Ceratotherium_simum
GG-TAAATAGCTGCTAATTG-CTTATTTTACTTATTGCT----TATTATTATTATT---GTAAACCATATTTCTTT----
--------------------------------------------------------------------------------
--------------------------------ATAGCCTGGGGACTACTT-GGACAAA--ACCCTAGATGTCTTGTTGGC
TCCAA
>Condylura_cristata
AGTTCAATAGCTGCTAATTG-CTTGTTTTAACTATTGTT----TTTTATTACTGTT---GTAAACCACATTTATTT----
--------------------------------------------------------------------------------
--------------------------------TTAGTCTGTAGACT--------------------------TTGCTGGA
CCTGA
>Erinaceus_europaeus
GGTTCAATAGCTGCTAATTG-CTTGTTTTAATTGTTGTTTGGTTATTAATATTATG---GTAAACTATAATCCTTT----
--------------------------------------------------------------------------------
--------------------------------ATAGTCCAGGGACTACTT-GGAAAAATGGTCTTAGATGATTTATGGGT
TTTGA
>Homo_sapiens
GGTTCAGTACCTGCTAATTG----------CTTATTGTT----TATTATTAATATT---ATAGACTATATT--TTT----
--------------------------------------------------------------------------------
--------------------------------ATACCCTGTGGACTACTT-GGAAAAA---GCTTTGATGTC---TTAGC
ACTGA



Dog321_LINE

>L1MA9_3END
------------------------------------------------------------------------------TT
TTT----CCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGG----TGTACAACGTGATGTTTTG
ATATACGTATACATTG-TGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTACCATTT---
------------------------------------------------------------------------
>Canis_familiaris
TTTATATCCTAGTTTATATCAGTTGTC----ATGCAATAAGGCCATGGAAGATA---CTAATTTTGCTGTT-CTT---TT
TTT---TCCAGTTTTACTGAAAAATAATGGACATGCATCA-TTCTATAACTTTAAAG----TGTACAGTGTGATGGTTTG
ATTTAC--ATATATTA-TGAAATGGTTACCATTATAGGTTTAGTTAAC--ATCCATTATCTCATT---------------
TTCTTTTTTTCATTATCTC---ATATTCATT-TTGCTTTTATGCTGACAG-TTTTTGCTGGCACAACACACT
>Felis_catus
TTTACATCCCAGGTTCCATCAGTTGTC----ATGC----AGGCTATGGGCAACT---TTAATTTTGCTGGG-TTT---TT
TT---CCCCAGCTTTATTGAAAAATAATTGACATATATCA-C--TGTAAGTTTAAGGTATGTATACAGCTTGATGGTTTG
ATTTAC--ATATACTG-TGAAATGATTACCACAATAGGTTTAGTTAAC--ATCCATCATCTCATA---------------
TTCATTTTGCT--------------------------TTTGTGTTGACAG-CTTTTGCTGGCACCATACACT
>Manis_pentadactyla
CATACATCCTAGGTTCCATTTGTTGTC----GTACAGTAAGGCCAT-GAGGGCA---TTACTTTTACTGTT-CTT---TT
TTTCCCCCCCGTTTTATCAACAAATAATTGGCATACATCA-CTGTGTCAGTTTAAAG----TATACAGCATGATGGTTTG
ATTTAC--ATATATTG-TGAAATGATTACCACAATAG-----GTTAAC--ATCAGTCATCTCAT----------------
-TAATTTTGCTCT--TCTT---ACGTCCGTCAGTGCTTTTATACTGACAG-TTTTTGCTGGCACA--ACACT
>Sus_scrofa
TTTACATTCTCAGTTCTGTTGGTAGTC----ATGCAGTAAAGCTGTGGTATACT---TTAATTTTGCTGTT-CTT---TT
TTT--CCCCAGTTTTATTAAAAAATAATTGAC----ATCA-CTGTATAAGCTTAAGG----TGTACAGCATGATGGTTTG
ATTTAT--ATATATTG-TGAAATGAT---CACAATAGATTTAGTTAAC--ATTTATAATCTCATA---------------
TTCATTTTACTGT--TCTT---AACTCCATCACTGCTTTTATGCTGACAGTTTTTTGCTGGCACAATACACA
>Tursiops_truncatus
TTTACATTCTAGATTCCATTGGTAGTC----ATGCATTAAGGTCATGGAGGACA---TTACTTTTGCTGGG-TTT---TT
ATT----CCAGTTTTATTGAAAAATAATTGACATATATCA-CTGTATAAGTTTGAGA----TGTACAACATGATGGTTTG
ATTTAC--ATATATTGATAAAATGATTACCACAATAGGTTTAGTTAAC--ATTTATTA-CTTGTA---------------
TTCATTTTGCTTT--TCTT---AAGCCCATCATTGCTTTTATGCTGACAG-TTTCTGGTGGCACAACACACT
>Equus_caballus
CTTATATCCGAGGTTCCATCGGTTGTC----ATACAGTAAGTCCACAGAAGACA---TTAATTTTGCTGTTGTTC---TT
TTT--TTCCAGTTTTATTGAAAAATAATTGACATATATCA-CTATATAAGTTTGAGG----TGTGCAGCATAATGGTTTG
ATTTAC--ATATATTG-TGAAATAATTGCCACAATAGGTTTAGTTAAC--AACCATCATCTCATA---------------
TTAATTTTGCTGC--TCCT---AAGTCCATCAGTGCTTCT--------------TTGCTGGCACAGCACAAA
>Ceratotherium_simum
TTTATATCTGAGGTTCTATCTGTTGTC----ATGTAGTAAGGCCACGGAAGACA---TTAATTTTGCTGTT-CTT---TT
TTT--TCCCAATTTTATTGAAAAATAATTGACATACATCA-CTATATAAGTTTAAGG----TGTACAGCATAATGGTTTG
ATTTAT--ATATATCG-TGAAATAATTACCACAGTAGGTTTAGTTAAC--ATACATCAGCTCATA---------------
TTAATTTTGCTGT--TCTT---AAGTCCATCAGTGATTTT--------------TTGCTGGCACAACACACT
>Myotis_myotis
TTCACA-CCCAGGTTGCATTGATTGTC----ATGCAGTAAGGCCCTAGAGGAAA--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TGGATTTTGCTGTT-CTCT---GAGTCCATCAGTACTTTTATGCTGGTAG-TTTTTGCTAGCACACTACACT
>Rousettus_aegyptiacus
TTTACATCCTAGGTTCCATTGGTTGTC----ATGCAGTAAGGTCATGGAGGACA--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TTAATTTTGCTGT--TCCT---AAGTCCATCAGTGC-TCTGTGTTGACAG-TTTTTGTTGGCACACCACATT
>Condylura_cristata
CTTACATCCTAG-TTCCATTGATTGTCGATTATACAATAAGA--ACAGAGTACA--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TTAAC-TTGCTGT--CCCT---TAGTCTATTATTGTTTTCTTGCTGGCAG-TTTTTGCAGGC-----ACACT
>Solenodon_paradoxus
TTTACATCCTAGATTCCATCAGTTACC----ATGCACTGAAACCACAGAGGGCA--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TTAACTTTGCTGT--CATT---AAGTCCATCAGTGCTTTTATGCAGACAG-CTTTTGCTAATACAGCAAACT
>Homo_sapiens
TTTACATTGCAAGTTCCATTGGTTGTC----ATGCAGTGAGGCCATGGAGAGCA--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TTCGTTTTGCTGC--TCTT---AACTTCATCAGTGCTTTTATGCTGACAG-TTTTTGCTGGTGCAACACATT



Dog323_LINE

>L1_CARN7_3END
---------------------------------------------------------------------GGTGACAGATG
GTAACTAGACTTATTGTG----GTGATCACTTCACAATGTATACAAATGTCGAATCACTATGTTGTACACCTGAAACTAA
TATAACATTGTATGTCAATTATACTCAAATAAAAAAA-------------------------------------------
-------------------------------------------------------------
>Canis_familiaris
AATGAAATGTGGCTTAAATACCATACAATGGAATGTTATTCAGCGAT---AAA--AGGAATGATGG-----------GTG
GTAACGAGATGGATGGTAAATTAAGATCATTTTACAATATATACAAATGTCTAATCATTATGTCATACACCTGGAACTAC
TAT---GTCGTACATCAGTTATACCTCTATAGAAAATAATTACTGAAGGA----------AGGAAGAAATGAAGT---GC
TGATATGC----AC---------TACAACATGAATAACCCTTAAAAACATCATGCGAGGTG
>Felis_catus
AACAAAATGTGGTTGATATACCATACAATGGAATATTATTCAGCAAT---AAA--AGGAATGATGG-----------ATG
GTAACTAGACTTAGTGTG----GTGAACATTTTACAATCTACACAAACACTGAACTGTCATGTTATACATCTGAAACTAC
T-----GTTATATGTCAATCAGATCTCTATAAACAATAATTTATGAAGGA----------AGGAAGGATTGAAGT---GC
TGACATAC----AC---------TACAACATGAAGAAGCTTTAAAAACAT---GCTAAGTG
>Manis_javanica
AACAAAATGTAG----TAAACCATGCAATGGAATATTAT-CAACAAT---AAAAAAGGAATCATGA-----------ATG
GTAACTGTATTTATTGT-------GATCATTTTGCTATATATATAAATATGGAATCATAAT---TTATACCTGAAGCCAT
TATAAT-----------ATTATACCTCATTAAAAA-TAATA-------------------AATAAAAAATGAAGT---AT
TGATACAT----GT---------T-CAATATGAATGATTCTTAAAACCATTATGCTACATG
>Sus_scrofa
AATACAATGTAG--CACATCCCACCTGACGGAATGTCTTGCAGCAAG---AGA-GAGGAGTGACGG-----------ATG
GTGGTAAGACTCGCTCTG----GTGACCACTTCTGAACATACCCAAGTACTGCATCATTACGTTGTGTACCTGAAAGTA-
-ACAATGTGACGGGGCAACTGGACCTCAATGAAAATGAATAA------------------ACACAGGCGTGAAGC---AC
TGATACATAAATGC---------TCTACCACGAACGAGTCTTGAAAACATTTCGCTAAGAG
>Bos_taurus
AACATGATGTGG----TATCCCATACAACGGAATATTATTCAGCAAT---AAA-AAGGAACAATGG-----------ATG
TTACCTAGACTTATTGTG----GTGATCACTTCTCAATATATACAAGTATAGAGTCATTATGCTGTAGACCTGAAACTAA
CATAATGTTATATGCAAATTACACCTCAGGAAAAAAAAAAGATAAAGGA-----------ATAAA--------AT---AC
TGATACGT----GC---------TATACTATGAATGAT-ATTAAAAACATTTTGCTAAATG
>Equus_caballus
AACAAAATGTGG----TATACCATACAATGGAATATTATTTAGCAAC---AAA-AAGGAATGATGG-----------ATG
TTAACGAGACTTAATGTG----GTGATCATTTTGCAGTCCATATAAATATCAAATCATTATGTTGCACA-CTGAAACTG-
---------ATATGCCAGTTACAGCTCAATAAAAATGAAAGAAGGAAAGAAAGAAAC---AAAGAGAATTGAGGT---AC
TGATACAT----GC---------TAAATCACGAATGATCCCTAAAAAAATTATATTAAGTG
>Ceratotherium_simum
GATAAATTGTGG----TATACCGTACAATGGAATATTATTCAGCATT---AAA-AAGAAATGATGG-----------ATA
TTAACCAGACTTAATGTG----GTGATCATTTCGCAGTATATATAAATATTGAATCATTAT---TTACACCTGAAACTAA
T-----ATAATATGTCAGTTATACCTCAATAAAGAAGAAAGAAGGAAACAA---------AGAAAGAATTGAAGT---AC
TGATACAT----GC---------TACAACATGAATGATCCTTAAAAACATTATACTAAGTG
>Myotis_myotis
GACGAGGTGGGACCCAAGTGCC-----ATGGAATATTATTCAGCAAT---------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------GAAGAG-------GG---AC
C------T----GC---------TATGACATGGAGGGTCCTTGAAAACATCAGGCTCAGTG
>Rousettus_aegyptiacus
GACACAGTGCGA----TGCACCACGCAGTGGAAAGCGGTCCATCGAT---------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------AGGGAGGAAGGACGG---GC
AGATGCAC--GTGC---------CACGGCGTGGACGGTCCTTGAAAAGCTGATGGCGAGCG
>Condylura_cristata
AACAATATGTGG----TATACTATGCAATGGAATAGTACATGGCAAT---------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------AAAAGGAGATGATGT---AA
TGATATATTGCAACAAAGTAATGCACTACATAGATGGTCCTTAAAATTATTATGTAAAGTA
>Solenodon_paradoxus
AGCACAATGTGG----GACAATGTACGATGGAATAGAATTCGGTCAT---------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------AAAAAGA-ATGATGT---AT
TGGCATGT----GG---------TACAATGTGCATGGTCCTTGAAAATGTTATGCTATATG
>Homo_sapiens
AACAAAATGTAG----TATACCACACGAT-GAATATTATTAGGCATT---------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------AAAAAGGAATAAAGT---GC
CGATACAA----GC---------TACAGCATG----ATCCTTGAAAACATTATGCTGAGTG



Dog325_LINE

>L1_CARN7_3END
-------------------------------------------------------------------------------A
TATATATACAATGGAATACTACTCAGCCATAAAAAAGAATGAAATCTTGCCATTTGCGACAACATGGATGGACCTTGAGG
GCATTATGCTAAGTGAAAT-AAGTCAG-CAGAGAAAGACAAATACCATATGATTTCACTTATATGTGGAATCTAAAAAA-
CAAAACAAATGAACAAAAAAAAACAAACCAAACAGACTCATAGATACAGAGAACAGATTGGTGGTTGCCAGAGGGGAGGG
GGGTTGGGGATGGGTGAAATGGGTGAAGGGGGTCAAGAGGTACAAACTTCCAGTTATAAAATAAATAAGTCA--TGGGGA
TGTAATGTACAGCATGGNGAATATAGT-CAATAATATTGTANTAACNTTGTATGGTGACAGATGGTAACTAGACTTATTG
T---GGTGATCACTTCACAATGTATACAAATGTCGAATCACTATGTTGTACACCTGAAACTAATATAACATTGTATGTCA
ATTATACTCAAAT------AAAAAAA------------------------------------------------------
------------------------
>Canis_familiaris
CTTGACAAATACAATTTA-GGT-AAAAAT------GGTCCTATATGTCAATACTTCTA---AAACTTTAATGTGCA----
----------ATGGAATATTATTCAGCTATGAGAAAGGAAGATAGTCTTTGATTTGTAACAACGTGAAAGGATCTTGAGC
ACATTATGCTGAGTGAGAT-AAGTCAGAGAAAGAAAGACAAGGAC--TATCATCCCATTTACATGTGGAATTTTAAAAAG
TTAAACCTGTAAAAAAAAAAAAAAAAAAAAAAAAG------------------CAAAATATTGGTTACCAGGGAATGGAA
TGG-----GAAGGATTAAA---ATGCTGATGTTTAAG-AGAACAAACTTTTAACAG-GTAGTAAATAAACCA--TAGAGA
TCTAATGCACAGTATCATGAATACAGA-TAATAGTGTTACACCATAATTATGTAATG-----CCATAAATATTGCTACAC
T---GGCAATCCTGTTACAATATATAAATGTGTCAA-----CACGTTGTATACCTTAAACTCACACAATGTTACATATCC
AATTCATCCATTG------AAAAAAA---AAACCCTTAAATGTGCA---TATGAATCTCCTGAGAATCATAC--------
-GATTCTCAT--TGGA-TGGAGCC
>Felis_catus
ATTGATGGATACAATTTA-GGT-AAAAATAGTAAAAGTCCTATAGGCCAATACTTCTA---AAACTTCAATGAGCA----
----------ATGGAATATTATTCAGTCATGAGAAAGGAAGATATTCTTTCATTTATGACAACATGAAAGGACCCTGGGC
ACATTATGCTAAGTGAGAT-AAGGCAG------------------------ACCTCACTT--ATGTGGAATTTTAAAAAG
TTAAAACTATAAAAAAAAAAAGAA-----------------------------TAAAATGATGGTTACTAGGGGTTTGGG
CGG-----GAAGGATTAAA---ATGCTGGTGTTTAAG-GGTACAAACTTATAACAA-GTAGTAAATAAACCA--TAGAGA
TCTAATGCACAGTATCATGAATACAGATTGATAATGTTGTAGCATAATTATGTAATG-----TGATAAATATTGCTACAT
T---GGCAATCATATTACAATATGTAATATTAT----------------------------------ATGTTATATGTAA
TATATATATATGTGTCCCCAAAAAAG---GGACANNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNN
>Manis_pentadactyla
CTTGGCAAACACCATTTGCAAT-AAAAATAG---AAGTCCTACAGGCCAGTACTTCTC---AAACTTTAATACATA----
----------GTGGAATACTATTCAGCCATGAGAAAGGAAGATATCCTTCCATTTGTGACAACATGGTTGGACCCTGAGC
GTGTAATACTAATAGAGGT-TAGTCGGACAGAGAAAAATGAGTAGCATATGATATCACTTACATGTGTAATTTTAAAAAG
TTAAACCTATAAAAAACAGTA---------------------------------AAAATAGTAGTTACCAGGGGATGGGA
TAG--GGGGACAGATGAGA---GTGATGGTGTTTAAG-GGTATAAATTTGTCATGA-ATAGTAAATAAGTAAATAAGAGA
TCTAATGCACAGTGTAATAAATATAGA-CAATAATATTGTAGTATAATTAAGTAATG-----TGATAAATACCACTACAT
T---GGCAGTCATATTGCAACATATAAAGGTAT-----------------AACCTTTCATTTACACAACGTTACATTTCA
AATTTATTCAGTT------AAAAA-----AAGCTCT--CATGTGCA---CATGAATCTCCTGGGAATCATGTTAAAATAC
AGATTCTGATTCTAGG-TAAAGCC
>Equus_caballus
CCTGAGACATACCATTTTCAGT-AAAAATAG---AAGTCCTATAGGCCAATACTTCTC---AAACTTTAATGTGCA----
----------ATGGAATATTATTCAGCCATGAGAAAGGAAGATATCCTCGAATTTGTGATGGCATGGATGGACCTTGAGC
TCATCACACTAAGAGAGAT-AAGTCAGACAAAGGAAGACAAATACTGTATGATCTCACTTATATGTGGAATCTGAAAAGG
TTAAACGTGTGAAAAACAGAGAG------------------------------TAAAGTGGTGGTTACCAGGGCATGAGG
GGG----TGGGGAATAAGA---GTGCTGGTTTTTAAA-GGTACAAACTTCTAACAA-GAAGTAAATAAACCG--TAGAAA
TCTAATTCAGAATATAATGAATGTAGA-CAATAATATTGTACTATAATTATGTAATG-----TGATAAATATTACTACAC
T---GGCAATCATATTACAATATATAAATGTATCAAAGTTACACCTTGTACACCTTAAATTTATACAATGTTACACGTCA
CATTTATTCAATT------AAAAAA----TAACTTT--AATGTGCA---TATGAATCTCCTAGGAATCATGGTAAAATAC
AGATTCTGATTCTGGG-TGGAGCC
>Ceratotherium_simum
CCTGAC--ATACCATTTGCAGT-AAAAATAGTAGAAGTCCTATATGCCAATACTTCTC---AAACTTTAATGTGTA----
----------ATGGAATATTATTCAGCCGTGAGAAAGGAAGATATGTTCCCATTTGTGACAACGTGGATGGACCCTGAGC
AC-TTATGCTAAGTGAGAT-AAGGCAGACAGAGAAAGACAAGTACTATATGATATCACTTATATGTGGAACCTAAAAAAC
TTAAACCCGTAAAAAACAGAGAG------------------------------TAAAGCAGTGGTTATCAGGGGATGGGG
GGG--------CAATAAAA---GTGATGGTGTTTAAA-GGTACAAACTTGTAACAA-GAAGTAAATGAGCCA--TAGAAA
TCTAATGCACAGTATAATGAATATACA-CAATAATATTGTACTATAATTATGTAATG-----TGATAAATATTGCTACAT
T---GGCAATCATATTACAGTATATAAATGTATCAAAGTAACGCCTTGTACACCTTAAATTTACACAATGTTACACATGA
AATTTACTCAATT------AAAAA-----AAACTGT--AACGTGCA---TATGAATCTCCTGGGAATCACGTTAAAATTC
AGATTCTGATTCTGGG-TGGAGCC
>Myotis_myotis
CCTGACAAATACTACTTACAGTAAAAAATACTAGAAGTCATATGGGCCAATACTTATC---AAACTTTAATGTGCA----
----------ATGGGATACTATTCAGGCATGAGAAAGGAAGAAATCCTCCCATTTGTTACACCATGAACGGACCTTAAGC
AC--------AAGTGAGAT-AAGTCAG----ATAAAGACAAGTACTG---AACATCATTTATATGTGGAATCTAAAAAAG
TTAAATCTGTAAAAAATAGAGAG-------------------------------TAAATGGCAGCTACCAGGGGATGGGA
GAG--------GGGTTAAA---GTGATGGTGTTTAAG-GGTAAAAACATGTAACAA-GTAGTAAATAAGTCA----GAGA
CTTAATGCACACTGTAATGAATATAGA-CAATAATATTGTACTATAATCAGGCAATG-----CAATAAGTATCACTACAT
GTAATGCAAGCATATTACAATATATACATGTATCAAAGTAATATGTTATGTA-CTTAAACTTGCACAATATTTCATGTCA
AATTTATTTAATT------AAAAAAG---CAACTTT--AATATGCA---TATGAATTTCCTGAGAATTATGTTAAAATAC
AGTTTCTGATTCTGGGTTGGAGCC
>Rousettus_aegyptiacus
CCTGACAAATATCATTTACAGT-AAAAATAGC--AGGTCTTACAGGCCAATATTTCTC---AAACTGTAATGTGCA----
----------GTAGAATATTATTCAGCCATGAGAAAGGAAGATATCTTCACATTTGTGACAACATGGATGGACCTTGAGC
AAAT-ATACTAAGCAAGATCAAGTCAGATA-AGAAAGACAAGTATTGTATAATATCACTTGTAAGTGGAATCTAAAATAG
TTAAATCTGTGAAAAACAG----------------------------------TAAAATGATAGTTATCAGGAAATAGGA
GAG-----AAGAGGTAAAG--AGTGATGGTGTTTAAG---TACAGACTTGTAATGA-GTAGTAAATAAGCCA--TAGAGA
TCTAACGCATGGCCTAATGAA-ATAGA-CAATAATATTGTACTATGATCATGTGATG-----CAATAAATATC---ACAT
C---GGCAATCATATTACAATATGTGA--------------CACACTGTATAACGTAAACTTATGCAATGTTACATGCCA
AATGTATTGAATT------TAAAA-----AAACTTT--AATGTGTA---CATGAA-ATCGTGAGAATTCTTTTAAATTAG
AAATTCTGATTCTGGATTGGAGCC
>Sus_scrofa
CCTAACAAATACCATTTGTACT-AAAAATAGCAAAAGCCGTATATGCCAGTACTTCTC----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------AAACTTT--AATGTGCA---TATGAACCTCCTAGGA------------TAG
AGATTCCGATTTTGGG-TGGAGCC
>Bos_taurus
CTTGACAAATACCATTTGTAGT-AAAAATAGTAAAAGTCATATATGCCAGTACTTCCC----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------AAACTTT--ACTGAGCA---TTTGAATCTCCTGGAAATCATATTAAAGTAT
AGATTCTGATTTTGGG-TGGATCC
>Condylura_cristata
TCTGACAAATACTGTCTGCAGT-AAAAAGAGTAAAAGTCTGATGTGCCAATACTTCTC----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------CAAATTT---ATGTGCA---TATGAATCTGCTGGAAATCACAGTAAGTCAC
AGATTCTGATTCTGGG-TGGAGCC
>Sorex_araneus
CTTGACGAAT-CCTTTTATTGT-AAAAACAATAAAAG-CTAATAGGCCAATACTTTCC----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------CAATATT--ATTGTGCA---TTTGTATCTCCTGGGAATCATGGCAAACA--
----------TCTGGG--TGAGCC
>Homo_sapiens
CCTGATAAATACCATTTGCAGT-AAAAGTAATAAAAGTCCTATAGGCCACTGCTTCTC----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------AAACTTT--AATGTGCT---TATGAATCTTCTGGAGATCATGTTAAAATGC
AGATTCTGATTCTGGG-TGGGGCC



Dog326_LINE

>L1MC3_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------TTTTTNAAAATAAACTTTTTATTTTAGAATAGTTTTAGATTTACAGAAAAATTGCGAAGATAGTACAGAGAG
TTCCCATATACCCCACACCCAGTTTCCCCTA-TTATTAACATCTTACATTAGTATGGTACATTTGTCACAATTAATGAAC
CAATATTGATACATTATTATTAACTAAAGTCCATACTTTATTCAGATTTCCTTAGTTTTTACCTAATGTCCTTTTTCTGT
TCCAGGATCCCATCCAGGATACCACATTACATTTAGTCGTCATGTCTCCTT-AGGCTCCTCTTGGCTGTGACAGTTTCTC
AGACTTTCCTTGTT-TTTGATGACCTTGACAGTTTTGAGGAGTACTGGTCAGGTATTTTGTAGAATGTCCCTCAATTGGG
ATTTGTCTGATG-------TTTTTCTCATGATTAGACTGGGGTTATGGGTTTTNGGGAGG--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
>Canis_familiaris
GACCT---AGGCAATGGTTAGATTAAAAC---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------AGTGATTT---TCAAACAGT--TTTTGAAAA----ATCAAT------TATATGG
TTTGT----TCTGGAAAAAATAAGTTTTACTTTAGAATAGTTTTAGATATATTGAAAAATTATGAAGATAGTGT--AGAG
TACCTATATACTCCATAACTAGTTTTCCCTA-TTATTAACATCTTATAATAGCAGGATACATTTGTC--AGTTAATGAAC
CAATAT-----CATTATCATTAACCCAAGTCCATAATATATTCAGATTCCCTTTGTTTCTCTCTAATGTCCTTTTTCTGT
CCTAGGACCCCATCCAGGACACCTCATTACATTTAATCTCCTTGTCTTCTT-AAGCTCCTCTTGACTGTGACAGTTTCTC
AGGTTTTCCTTGTTCTTTAATCACCTTGACAATTTTGAGGAATGTTGGTCAGGTATATTATAGAATGTTTCTTAGTTGGG
ATTTGTCTGTT--------TTTTTTCCAAATCTATTGAGCTATAATAG---------------GAACAT----AAATATC
TTACTC---AATCCT--ATGTACAAAAATGAATAAAAATGGAG-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------CTGTTCTAAGTTCTAAATCAGGA
>Felis_catus
GAACT---AAGCAATGGTTAGATTAAAGCAGTGATTTTCAGGGGCACCTGGGTGGCTCAGTCGGTTACGGGTCTGACTCT
TGATTTTGGCTCAGGTCATGATCTCATAGCTCATGAGTTCCAGCCCACTGACAGCACAGAGCCTGCTTGGGGTTCTCCCT
CTCCCTCTTTCTCTTTAC--------------------------------------------------------------
---------------------------------------------------------------------CCCTCCCCTAC
CATATAAATAAGTAAACATTTAAAAAAGTGATTT---TCAAGGAGT--TTTTAAAAAA---ATCAAG------TATATAT
TTCTT----TTCTGAAAAAATAAGCTTCATTTTAAAATAGTTTTAGGTTTACAGAAAAATTATGAAGATAGTAGAGAGAG
------AATACCCCACAACTACTTCTCCCTATTAATAA------TATGTTAGCAGGATA---TTGCCAAAATTAATGAAC
CGATATCATT--ATTATTATTAACCAAAGTCCATAACGTGTT-----------TGTTTTTCTCTAATGTCCTTTTTCTGT
C------------CCGGGACATCTCATTACATTTAATCTCCATGTCTT----AGGCAACTCTTGACTGTGACAGTTTCTC
AGG-TTTCCTTGTT-TTTAATAACCTTGATAATTTTGAGGAATATTGGTCATGTATTTTGTAGAATGTTTCTCAATTGGG
ATTTGTCTGGTTT------TTTCCCCCAGCTTTATTGAGCTCTAATTG---------------AAAAAT----AAATATA
CTTCTC---AATCTT--ATGTATAAAAGCGAATAAAAGTGGAGCTGTTCGGGGGCGCCTGGGTGGCTCAGTCGGTTAAGG
GTCCAATTTCGGCTCAGGTCATGATCTCACGGTTCGTGAGTTCAAGCCCTGTGTCAGGCTCTGTGCTGGCAGCTCGGAGC
CTGGAGGCTGCTTCAGATTCTGTGCTTCCCTCTTTCTCTCTGCCCCTCCCCTACTTGTGCTCTGCCTCTCTGTCTCTCAA
AAATAAATAAATGTTTAAAAAAATTTAAATAAAAGGAACTGTTCTGATTTCTAAATTAAGA
>Manis_pentadactyla
GGCCT---ACATACTGATTAGATTAAAAT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------AGAAGTTT---TCAAATGTT--TTTTAAAAA----ATCAAT------CATATAT
TCCTT----TAAAAAAAACACAATGTTTATTTTAGAATAGTTTTAGATTTACTGAAAACTTATGAAGATAGTGC--AGAG
TTCCCATATAC------------------------------TCTTACATCAGTAGGGTACATGTGTCATAATTAAGGAAC
TAATAT-----CATTATCATTAACTAAAGCCCATACTGCATTCAGATTTCCTTTGTTTTTCTCTAATGCCCTTTTTCTGT
CCCAAGATCCCATCCAAGAT----CATCATATTTAGTCATCGTGTCTCCCT-GGGCTCCTCTTGACTGTGACAGTTTCCC
AGACTTTCCTTGTT-TTTGATGACCTGGACACCTTTGAGAAGTACTGGTTAGGTATTTTGTAGAATGTTCCCCAATTGGG
ATTTGTCTGAA--------ATTTTTTCAGTTTTATTGAGATATAGCTA---------------ACAAAT----AAATATA
TTTCTT---AATCTT--CTATATAAAAATGAATAAAAGTGAAA-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------CTGTTCTGATTTCTAAATTAGGG
>Equus_caballus
AACCCAGGACACAATGGTTAGATTCAAAC---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------GGTGATTT---TCAAACAGT--TTTTTAAAA----AACAAAGATTTTTACATAT
TTTTC----TCT----AAAATAAGCTTTATTTTAGAATAGATTTAGATTCACAGAAAAATTATGAAG---------AGAG
TTCCCATATGTCCCATGACCACTTTCCCCTG-TTATTAACATCTGACATTGGTAGGGCACATTTGTCACAATTAACGAAT
CAATCTTGATACAGTCTCATTAACCAAAGTCCATACTTTATTCAGATTTCCTTTGTTCTTCTCTGCTGTCCTTTCTCTGC
TCCAGGGTCTCATCCAGGACACCACATGGCATTTAGCCGTCACGTCTCCTC-GGGCTCCTCTTGGCTGTGACAGTTCCTC
AGACTCTCCTTGCT-T-TGATGACCTGGACAGTTTGGAGGAGGACTGGT-AGGTATTTTGCAGAATGTTCCTCAATTGGG
ATTTGTCTGATGTTTTCC-TTTTTTCCAGCTTTATTAAGGTATAATAG---------------ACAAAT----AAATATA
TTTCTT---AATCTT--ATGTATAAAAATGAATAAAAGTGGGG-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------TTGCTCTGATTTCTAAATTAGGG
>Ceratotherium_simum
AACCTGCTACGCAATGGTTACACTAAAAC---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------GGTGATTT---TTAAACAGT--TTTTAAAAA----ATCAAT------CATATAT
TTCTT----TTTTAAAAAAATAAAGTTTATTTTGGAATAGTTGTAGATTCATAGAAAAATTATGAAGCTAGTGCAGAGAG
TTCCCATATGCCCCACAACCACTTCCTCCCGATTATTAACATCTTACATCAGTAGGGTACGTTTGTCACAATTAATGAGC
CAATATTGATACAGTCTCATTAACCGAAGTCCATACTTTATTCAGATTTCCTTTGTTTTTCTCTAATATCCTTTTTCTGC
TCCGGGATCCCGTCCAGGACAACACACTGCATTTAGTGCTCATGTCTCCTT-AGACTGCTCTTGGCTGTGACAGTTTCTC
AGCCTTTCCTTGTT-TTTGATGACCTTGACAGTTTTGAGGAGTACTGGTGAGATATTTTATAGACTGTTCCTCAATTGGG
ATTTGTCTGATGTTTTCCTTTTTTTTCAGCTTTATTGAGGTATAATAG---------------A-AAAT----AAATATA
TTTCTT---AATCTT--ATGTATTAAAATGAATAAAAGTGGAG-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------TTGTTCTGGTTTCTAAATTAGGG
>Myotis_myotis
AACCT---AAACAATGGTTAGATTAAAAT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------AGTGATTT--TTCAAATAGT--TTTAAAAAA----ATCAAT------CATATAT
TTCTT----TTTT---AAAATAAACTTTATTTTAAGATATTTTCAGAATTACAGAAAAATTATGAAGAAAATGT--AGAA
TTTCCATATGCAACACAACCATTTTCCCCA--TTATGAACATTTTGCATTAGTAGAATATGTTTGTCATAATTAATGAAT
CAATAT-----CATGATCATTAACCAAAGTCCATATATTATTCAGATTTCCTTTGTCTTTCTCTAATGTCCTTTTTCTGT
TCCTGGATCTTATCCAGGACACCACATTACGCTTAGTTATCATATCCCTT--AGGCCCCTCTTAATGGGGACAGTTTCTC
AGACTTTCCTTGTT-TTTGATGACTTTAACAGTTCTGAAGAGCACTGGTCAGGAATTTTGTAGAATGTTCCTCACTT-GG
GTTTGTCTGATT-------TTTTTTTCAATTTTATTGTGGTATAATTG---------------ACAAAT----AGATAAA
TTTCTT---AATATGTATTGTGTAAAAATGAATAAAATTGGAG-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------CTGTTCTAATTTTTAATTAGGGA
>Rousettus_aegyptiacus
TATTT---AAGCAGTGGTTAGATTAAATC---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------AGTGATTTTCATCAAATAGTAATTTTAAAAA----ATCAAT------CATAGGT
TTCTT----TTTA--AAAATTAAAATTTATTTTGGAATGGCTTAAGATTCACAGAAAAATTATGAAGATAGTAGAGAGAG
TTCTCATATACAGCACAACTTTCTTCTA----TTTTTAATATTTTGCATTGGTAGGGTATGTTTGTCACAATTAATGAAC
CGATAT-----CATTATCATT---------------------CAGATTTCCTTAATTTTTCTTTAATGTCCTTTATCGGT
TCCAGGATCCCATCTAGGATACCATAATGTATTTAGTCATTGTATCTCCTTAAGGCTCTTCCTGACTGTG-CAGTTTCTC
AGACATTTCCCGATTTTTGATAACCTTGACA-TTTTGAGGAGGAGTGGTCAAGTAGTTTGTAGAATGTTGCTCAGTT-GG
ATATGTTTGA---------TTTTTTTCAGCTTTATTGAGGTATAATTG---------------ACAAAT----AAATATA
TTTTTA---AATCTT--TTTTATAAAAAGAAAT---ATTAGAG-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------CTGTTCTGATTTCTAAATTAGGG
>Sus_scrofa
GACCT---ACACAATGGTTGCATTCAAAC---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------AGTGATTT---TCAAACAGT--TTCTTAAAA-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------ACAAAT------ATATA
TTTCTA---ATCCTT--AT-TATACAAATGGAT--AAGTGGAA-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------CTGTTCTGGTTTCTAAATTAAGG
>Bos_taurus
GACCC---AAACTATGGTTAAATTAAAAT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------AGGGAGTT---TCACATAGC--TTTTCAAAA-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------ACCAAATCCATCATATA
TTTCTT---AATCTC--ATGTATACACATGAAT--AAGTGGAG-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------CTGTTCTAATTTCTAAATTAAGG
>Condylura_cristata
GATTT---AAGCCATGGTAAGTTTGAAAT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------AGTGATGT---TCAAAATTTTTTTTTAAATA-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------TTTTAA-----AAT---
----TT---TATCT---ATGT-------------------GAG-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------TTATTCTGAAATCT---TTAGGG
>Scalopus_aquaticus
GACGT---AAGCCATGGTTAGATGAAAAT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------AGGGATTT---TCAAATTTT--TTTTAAAAA-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------CATTTT---------TA
CATTTT---AA-CT---ATGTA----AGTGAAGTAAAGGGGAG-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------CTGTTCTGATTTTT---TTAGGA
>Homo_sapiens
GACCT---AAGCTATGGTTAAATTAAAACAATGATTTTTGGCCTGGCGAGGTGGTTCATGCCTGTAATTCTAGCAGTTTG
GGAGACTGAGGTGGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTA
AAAATGCAAACATTAGCCAGGCATGGTGGCAGGTGCCTGTAATGCCAGCTACTCAGGAGGCTGAGGCAAGAGAATCGCTT
GAACCCAGGAGGCAGAGATTGCAGTGAGCTGAGATCAAACCACTTCACTCCAGCCTGGGCGAAAGAGCAAAACTCCTTCT
CAAATAAAATAAAATAAAAAAAAAACAATGATTT---TTAAGCAGC--TTTTT-AAG-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------ATGAAT-----TATATA
CTTTTA---AATCTT--TTGTATAAAAATGGATAAAAGTGGAG-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------CCGTTCTGATTTCTAAATTAGGG



Dog329_LINE

>L1MA9_3END
------------------------------------------------------------------------TTTTTCCA
GCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGAT-ATACGTATACA
TTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTACCATTTTTTTGTGT---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------
>Canis_familiaris
ATTTCAAATGTTGTCAGGAATTTTTTAAAATTTTGTTTTTGTACCATATCGTTTT---TTTCCCCAGTG-----------
---TTATTGAGATATAATTGTCATACA-GCATTGTA------GAAGTTGTACAGCTTAATGACTTGAT-TTAC--TTGTG
TCATGACATGATTACCAAAAT-AGTTTCCCTAGC--ATCCATCACCTTATGTAATTGG----------------TTTTAG
TC-TTT---AAAAAATCTGAAAATG-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------AACT-TAGATTGGCA--------GTAATTCTTTCCTTTGGTCT
>Felis_catus
GTTTCAAATATTGTCAGTAATTTTTTGAAATTCTGTTTTTGTATCATGTCTA-TT---TTTC--TAGTG-----------
---TTAGTGAGGTATAACTGATGTAGA-GCATTGTA------TAAGTTGTACAGCATAATGATTTGAC-TTAC--ATGTA
TCATGACATGATTACCAAAAT-AGTTACACTAAC------ATCATCTTAGGTCATCATTTCTA-----------ATTTAT
TG-TTT---AAAAATTCTGAAGATGTGGGGCGCCTGGATGGCTTCAGTTAGTTGAGCGTCCGACTTCAGCTCAGGTCATG
ATCTCGCGGTTTGTGAGTTTGAGCCCTGCATCCGGTTCGCTGCTGACAGCTCAGAGCCTGGAGCCTGCTTCCAATTCTGT
GTCTCCTTCTCTCTCTGCCCTCTCTTGCTCGCACTCTGGCTCGCTCGCTCTCTCTCAAAAATAAATAAACATTAAAAAAA
ATCTGAAGATGATCT-TGGATTGGTA--------GTAATTCTTTCCATTGGTCC
>Manis_pentadactyla
ATATCAAATATTGTCAGTAACTTTTGGAAATCATGTTTTTGTATATCAGTTT------TTTCCCCAGTT-----------
---TTGTTGAGATATAATTGACATACG-GCATTGTA------TAAGTTGTACAGCATAACGATTTGGCTTTAC--ATATA
TTGTAAAGTGATCACCACAGT-AGTTTAATTTTAATATCCACTATATTA----GTCCTATCTG-----------TTTTAT
TT-TCT---AAACAAACAGAAGATA-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------AACA-TGGCTGTGTA--------GTAATTCTCCCCTTAAGTCC
>Equus_caballus
ATTTCCAATATTGTCAGTAATTTTTAAAAATTCTATTTTTGAACTGTATCTAT-----TTTTTGCCGTT-----------
---TTATT--GATGTAATTGACATACA-GCATTGCA------TCAGTTGTATAGCATAATGATTTGAC-TTTC--ATATA
TCGTGAAATGAT-ACCACAATAAGTTTAAC------ATCTATCATCTTATATAGTCATGTCTA-----------TTTTTT
TC-TTT---AAAAAATTTGAAGATG-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------GATAGGTA--------GAAAGTCTTTCCTTCAATCC
>Ceratotherium_simum
ATTTCAAATATTGTCAGTAATTTTTAAAAATTCTTTTTTTGGATCATATCTAT-----TTTTTCCAGTT-----------
---TTACTGAGATATAATTGACATACA-GCATTGTA------TCAGTTGTACAGCAT--TGATTTGAC-TTAC--ATACG
TTGTGATGTGATTACCATAAT--GTTTAACT------TCCATCATCTTATATAGTCATATCTA-----------TTTTAT
TC-TTT---AAAAAATCTAAAGATG-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------AAGA-TGGATAGGTATAAGATACATGCATCTTTCCTTCAATCC
>Myotis_myotis
ATTTCAAATATTGTCAATTTCTTT---AAATTCTA-TGTTGTGTCAC--CTA------CTTTTCTAGTT-----------
---TTATTGAGATATAATTGATATACA-GCATTGTA------TAAGTTGTACACCATAACAACTTGC--GTAC--ATAGA
TGATAAAGTGATTATCATAATAAGTTTTATTAGT--ATCCATCATCTAAAATGGTTGCATCTA-----------TTTACT
CCTTTA---AAAAAATATGAAGGAA-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------AACA-TAGATA-ATA--------GCAGTTCTTTCCTTCAGTCC
>Rousettus_aegyptiacus
ATTTCAAATATTATCAGTAATTTTAAAAATTC----TATTGTATATTTTCTA------TTTTTCCAGTT-----------
---TTATTGAGGT-TAATCGATATACA-GCATTGTA------TAAGTTGTACAGCATAATGATTCAAC-TCAC--ATA-A
TCA--AAGTAATTACCATAATAAGTTTAAATAAC-----AATCATTTTATATGGTCATATCTA-----------TTTTAT
TCATTC---ACAATATCTGAAGATG-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------AACA-TGGAGAGGTA--------ACAGTTCTTTC----AGTCT
>Sus_scrofa
ATTTGAAATGTTGCCAGTAGTCTTTTAAAATTCTGTTTTTGTATCATACCTC----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TTTTAT
TCTTTT---AAAAAATCTGAAGATA-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------AAAA-TTGATAGGTA--------GTCAGTCTT--------GCT
>Bos_taurus
ATTTTAAATATTGCCAGTAATTTTTTTTTAATTCCGTTTTGTACCA----TC----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------CTTTAT
TTTTTT---TAAT--TCAGAAGATG-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------AACA-TGGATAGGTA--------GTCATTCTTTGCTTCATTCC
>Condylura_cristata
ATTTCAAATATTGCCAGTAATTTTTAAAAATTCTGTTTCTGTATCA----TA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TTTCAT
TC-TTT---GAATTATCTGAAGATG-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------AATA-TAGTTAGGCA--------GTAATTCTTTCTTCTGCTCT
>Sorex_araneus
ATATCAGATACCATCAGTGACTTCTAGTGATTTTGTTTT-AT--------TT----------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TTTAA
AC--------AAAAATCTGAAAATC-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------AACTTTCAGTGAGTG-----------AGTCATCCCTTTGGTCC
>Homo_sapiens
ATTTGTAATACTGTTAGTAAATTCTTAAAATTCTATTTTTG---CATTTCTA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TTTTAT
TCATTC---ACAG-ATCTGAAGATG-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------AACA-CAAATAGGTA--------GTAATTCTTTCCTTGAGTCC



Dog335_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
----------------TTAATATCCAA-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------AATATATAAGGAACTCAAACAACTCAATAGCAAAAAAACAAATAACCCG-ATTAAAAAAT
GGGCAAAGGACCTGAATAGACATTTCTC--------AAAAGAAGACATACAAATGGCCAACAGGTATATGAAAAGATGCT
CAACATCACTAATCATCAGGGAAATGCAAATCAA-AACCACAATGAGAT-ATCACCTCA-CACCTGTTAGAATG------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------GCTATTATCAAAAAGACAGAAGATAACAAGTGTTGGCGAGGATGTGGAGAAAAGGGAACCCTT
GTACACTGTTGGTGGGAATGTAAA------------------TTGGTACAGCCATTATGGAAAACAGTATGGAGGTTCCT
CAAAAAATTAAAAATAGAACTACC---ATATGATCCAGCAATCCCACTTCT-GGGTATATATCCAAAGGAAATGAAATCA
GTATCTCGAAGAGATATCTGCACTCCCATG-TT----CATTGCAGCATTATTCACAATAGCCAAGATATGGAANCAACCT
AAGTGTCCATCGACGGATGAAT-GGATAAAGAAAATGTG--------------GTATATATACACAATGGA---------
--------------------------------------------------------------------------------
--------------------------ATATTATTCAGCCTTAAAAAAGAAGGAAATCCTGCCATTTGTGACAACATGGAT
GAACCTGGAGGACATT--ATGCTAAGTGAAATAAGCCAGGCACAGAAAGACAAATACTG-CATGATCTCACTTATATGTG
GAATCTAAAAAA------------------GTCAAACTCATAG-AAGCAGAGAGTAGAATGGTGGTTGCCAGGGGCT--G
GGGGGTGGGGG------AAATGGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGA
GATCTAATGTACAGCATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAG
TGTTCTCACCACACACAAAAAAA-------------------TGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTT
GATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATAT-ATACAATTTTTATTT
GTCAATTATACCTCAATAAAGCTGGAAAAA--------------------------------------------------
-----------------------------------------------
>Canis_familiaris
GAATCATCAT----TGACTCTAACAGCTAAAT-CACTTAATACTAAACTCTCATT---------AAGTCTACTTAACAAA
A-----------AATAAAATAGTCCAA-----------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------TTTAGAAAAT
GAGCAAAGGACCTGAATAGACATTTTTC--------AAAAGAAGATATATGAGTGGCTAACAGGTACATGAAAAAGTGCT
TGAAATCACTAATCATTAGAAAAATAAAAATCTA-AACTACAATGTCAT-ACCAACTCA-TACCTGTTAGAATG------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------AC----ATCAAAATTACAAAAGATAACATATGT------------------------------
----ACTGCTGATAAGATTGTAAA------------------CTGGTACAGTCACT-TGTAAAATAGTATGGATTTTCCT
T-AAAAATTAAAAATAGAACTATC---ATATC--------ATTCTACTTCT-TGGAATAAACGCAAAAGAAACAATAACA
TTACATTGAATAGATCTCCCCACCCCCATG-TT----CATAACAGCATTATTCACAATAGCCAGGACAT-GAAACAACCT
AAATGTACACTGATGGGTGAATAAAAAAAAGGAGCTGTA--------------GTATATATACACTATGGGATA------
------------------AA------------------------------------------------------------
-----------------------------------------AAAAAACAAGGAAATCCTACCTTTTGTGACAACAT-GAT
GGAAACTGAGGGACTTCAATGCTAAGTGA-ATAATTCAGAT----AAAGACAAATGCTG-CATGATTTCATTTATATATG
GAATTTAAAAAATAA----ATAAATAAGCAAACAAACTCATAGAAAAAAGATATCAGAGTTGTGGTTACCAGAGGTG--G
AGGGTTGGGGGCATGGAGAATTTGAAGAAGGTAGTCAAAAGGTACAAACATCTAGTTGT--AAAATG---AAGTACTAGA
GATGTAATGTACAACATGATGGCTCTAGTTAACACTGCTGTATGGCATACTTGAAAATTATTAAGAAAGCAAATGCTAGG
AGTTCTCATCACAAGAAAAAA------CTTTTTTTCTTTTTTTTGTATTTGTATGAGATAATGG--ATGTTA-CTAAAGT
GACTGTGTTAATCATTTCATAATATAT--GTAAGTCAGATCATTAAGCTATACACCTCAAACCT-ATACAG-TACCAAAT
GTCAATTATATCTCAAGGAAACTGGAA--ACTTTTTAAAA---AAGATAAATTACAGTTA-A--ACAATT-ACA---TTG
GTAGATATTGGCTATTGGGCTTTCTAGCCTGAAAGGAACTGTCTTTA
>Felis_catus
GAATTATCAT----TGGCTCCAACAGCTAAGT-CACTTAGTTCTAAACTCTCATT---ACAATAAAGTACGTCTAGCAAA
A---AAAAATAAAATAAAATAATACAATTTTAAAAGTGGACAAAGAGGGGTGCCTGGGTGGCTTAGTCAGTTAAGCATTG
GACTCTTGATTTCGGCTCAGGTCAGGATCTCACAGTTTTGGGGATTGAGCCCCACAGTGCGGAGCCTGCTTGGGATTCTC
TCTCTCCTCTCTTTCTGCCCCTCTCTGTGCACACATTCTCCCTTTCTCTCAAAAAAAAAAAAATAAACATTTTAAAAAAT
GGACAAAGGACCTGAATAGACATTTTTC--------AAAAGAAGACAAAAGAATGGCCACCAGGCACATGGAAAAGTGCT
CCATGTCAGTAATCATTAGGGAAATGCAAGTGAA-AATCACAGTAAGAC-ATCAACTCA-CACCTGTTACAATG------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------GCTAGCATCAAAAATACAAAAGAT---AAATGCTGGTAAGGATGTGGATAAAA--GAATCCTT
GTCTACTGTTGATGGGATTATAAA------------------CTGGTACAGCCACTTTCTAAAACAGTATGAAGGTTCCT
CAAAAAATTAAAAATAGGACTATC---ATATCATCCAACAATTCTACTTCT-GGGAATATATTCAAAAGAAATAAAATTA
CTATGTTGAAGAGATATCTGTACCCTGACA-TTCATCCATAGCAGCATTATTTACAAGAGCCAAGACATGGAAACAACCT
AAGTGTCCACTGATGGATGAAT-TGATAAAGAAGTTGAA--------------GAACACATACACGATGGAAT-------
--------------------------------------------------------------------------------
-----------------------------------------AAAAACCAAGGAAATGCTGCCTTTTGTGACAACAT-GAT
GGAAATTGAGGGAGTTCAATGCTAAGTGAAATAAGTTAGAC----AAAGACATATACTGTTAAGATCTCACTTACATGTG
AAATCTAAAAAACAAATAAACAAATAAACAAACAGACTTGTAGAAAAAAGAGACCAGAGTTGTGGTTACCAGAGGTG---
GAGGGGAGGGG-ACGGATAATTTGAGGAAGATGGTCAAAAGGTACAAACATCTAGTTGT--AAGATAAAGAAGTACTAGA
GATATAATCTACAACATGATGACTATAGTTAACATAGCTGAATGGCATATTTGAAAGTTGTTAAGAAAGTAAATGCTAAG
AGTT---ATCACAGGAACAAA------CTTTTTTCCCTTTTTTTGTATCTATATGAGATAATGG--GTATCA-CTACACT
TATTGTGGTAATCATTTCATAATATAT--GTAAGTCACATCATTAAGCTATACACATCAAACCC-ATACAG-CCCTATAT
GTCAATTATATCTCAAGAAAACTGGGATTTTTTTTTTTAA---AAGATACATTACACTCATA--ACAATA-ACA---CTG
ATAGATATTGGCTGTTGGGCTTTCTATCCTGAAAGGCACTGTCTTTA
>Manis_javanica
AATATATCAT----AGGCACCAA-GGTTAAAT-CATTTAATTCTAAAACCCCACT---AAGATAAATTATATTTAACAAA
A-----AAATCC--CCAAATAATCCAA-----------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------TTAAAAAAT
GGGAAAAGAACATGAATATATACTTTTT--------GAATTAAGATATATGAATGGCCAACAGGTATATGAAAAGATGCT
CAGCATAACTAATCACTAGGGAAATGCAAAGCAA-AACCACAATGAGATTATCATCTCA-----TTTTAGAAAGGCTACC
ATCATCTGTGGCATCTTGCTGTACTGATGGACAGTGACTGCATTGGGGTATGGATGGG-GACTTGATAATATGGGTAAAT
GTAGTAACCACATTGTTTTTTCATGTNNTTCATGTGAAACCTTCCTAAGAGTGTATATCAATCATACCTTAATAAAAAAT
TTTTTTAAAAAAGAAAGGCTATCATCAAAAAGAT--GAGATAACAAACGC---TGGTGAAGATGAGAAAAGGGAATTCTT
GTGCACTGTTGGTAGGAATGTAAACTGGTACAGTCACTATTATTTTCACACACAC-----AAAACTATATGGAGGTTCTT
CAAGAAATTAAAAATAGAACCACC---TTATGATCTAGCAATTCCACTTCT-GGGAATGTATCTGAAGGAAGCAAAAACA
CTATATTGAAGAGACAACTGAACCCTCATATTT----CATAGCAGCTTTATTTACAATAGCCAAGACATGGGAACAACCT
AAGTGTCCATTAACAGATGAAT-GTATAAAGAAACTGTG--------------GTATATATACATATGTGTGTGTGTATA
AATGATACATTATTCAGCCA------------------------------------------------------------
-----------------------------------------TAAAAATACGTGAATCCTGCCATTTGGGCCATCCTGGAT
GGAACTTGAAAACACT--GTGCTAAGCAAATTAAGTCAGAG----AAAGACAAATACTG-TATAATCTCGCTTATATATG
GAATCTTAAAAAAG---------------AAAAAAACTCATAGGAAAATAA-ATCAAACTTGTGGTTACCAGAGGTG--G
GG---TGAGGGGAGGGAGAATTGGATGAAGGT-GTCAAAAGGTACAAACTTGCAGTT-T--AAGGTAAGTAAGTTCTAGA
GATGTAATGTACAACACGAGGACAATAGTTAACACTGCTGTATGGTATGTTTGAGAATT----AGAGAGTAAATCCTAAG
AATTCTCATCACAAGGAAAAA----ACTTTCTTCTTTCTCTTTTGTCTCCATATGAGGTGATGG--ATGTCAACTAAACT
TACTGTGGTAATCATTTCACAATTCAT--GTTAATGAAATTATTTTGCTGTATACCTCAAACTT-ATACAG-TGCTGTAT
ATCAGTTATATCTCAATAACTCAGGAA--AATTTTTG------AAG-----TTATTCTTAAA--ACAATAAAAA---TTG
GTAG-TATTGGTTGTTGGGCTTTCTGGTCTGAAAGGTACTATCTTTA
>Equus_caballus
GATACATCAC----TGTCTCCACCAGCTAAAT-CACTTAATTCTAAACTCCCATT---AGAATAAATCATATTTAGCAAA
A----------GA-ACAAATAATCCAA-----------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------TT-AAAAAT
GGGCAAAGGGCCTGAATAGACATTTTTC--------CAAAGAAGACACATGAATGGCCCACAGGTCCATAAAAAGGTGCT
CAACATAACTAATTATCAGGGAAATGCATATCAA-AACCACACTGAACT-ATCACCTCA-CACCTGCTAGAAAG------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------GCTACCATCAAAAAGACAAGAGATAACAAATGCCCTTGAGGATGTAGAGAAAA-GGAACCCTT
GTGAACTGTTAGTGGGACTGTCAA------------------CTGGTATAGCCACTATGGAAAACAGTACGGAGGTTCCT
CAAAAAATTAAAAATAGAACTACC---ATATGATCCAGCAATTCCACTTCT-GGGAATATATCCAAAGAAAATGAAAATA
CTATGCAAAAGAGATATCTGCACCTTCATA-TT----AATAGCAGCATTACTTACAACAGACAAGACATGGAAATAATGT
AAGTGTCCATCGAC-AATGAAT-ACATAAAGAAGTTGTG--------------GTGTATATATACACATATATA------
------------------TAATTGTATATATAATATATATTATATATGTATATATGTATGCATATACATAATATATATGT
GTATGTATATATGTATATACATATATATATAATTCAGCCATAAAAA-GAAGGAAATCCTGCCATTTGTCCCAAGATGGAT
GGACCTCGAGGGCATT--ATTCTAAGTGAAATAATTCAGACAGAGAAAGACTAATACTG-TATAATTTCACTTATATGTG
GAATCTAAACAACAA-----------------CAAACTCATAG-AAAAAGAGATCAGATTTGTGGTTACCAGAGATG--G
GGGGTTGGGGG-TGGGGGAATTGGATGAAGGTGATCAAAAGGTACAAACTTCCAGTTAT--AAGATAAATAAGTACTAGA
GATGTAATGTACAACACAACAACTATAGTTAATAATGCTGTATGGTATA-TTGAAAGTTGTTAAGACAGTAAATCCTAAG
AGTTCTCATTACAAGGAAAAA--CATTTTTTTATTTTTCTATCTGTATCATTATGAGATGATGG--ATGTTAACTAAACT
TATTGTGGTAATCATTTCAGAATACAT--ATAACTAAAATCATTACGCTCTACACCTCAAACTTCATACAG-TGCTATAT
GGCAGTTATATCTCAATAAAACTGGAA-AAAAATTTTAAA---AAGATAAATTACATTTACA--ACAATAAACA---TTG
GTAGATATTGATTTTGGAGCTGTCTGGCCTGAAAAGGACTGTCTTCA
>Ceratotherium_simum
GATACACCAT----TGGCTCCACCAGCTAAAT-CACTTAATTCTAAACTCCCATT---AAAATAAATTATATTTAGCAAA
A----------AA-ACAAATAATCCAA-----------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------TT-AAAAAT
TGGCAAAGGTCCTGGACAGACATTTTTC--------CAAAGAAGATATATGAATGGCTAACAGGTATATGAAAAGGTGCT
CAACATGAATAATTACCAGGGAAATACATATCAA-AACCACAATGAGAT-ATCACCTCA-CACCTGTTAGAATG------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------GCTATCAACAAAAAGACAAGAGGTAACAAATGCTGTTGAGGACATAGAGAAAAAGGAACACTT
GTGAACTGTTTGTAGGGTTTTAAA------------------CTGGTATAGACACTATGGAAAACAGTATGGAGTTTCCT
CAAAAAATTAAAAATAGAACTACCTAGATATGATCCAGCAATTCCACATCT-GGGAATATATCCAAAGAAAATGAAAACA
ATATGTGAAAGAGATATCTGCATCCTCATG-TT----CATAGCAGCATTATGTACAATAGCCAAGATATGGAAACAACCT
AAGTGTCCATTGAC-AATGAAT-GGATAAAGTTGTGGTATATATATGTATACTATATAGATACATACATACATA------
------------------TAATTGTATATACAA---------------TATATATGTATACATATACACAGTATATATG-
-----------------TATACATATATATAATTCAGCCATAAAAATGAAGGAAATCCTGCCGTTTGTGACAACATGGAT
GGACTTTGAGGGCATT--ATTCTAAGTAAAATAAGTCAGATAGAGAAAGACAAATACTG-TATTATCTCACTTATACGTG
GAATCTAAACAACAA-----------------CAAACTCGTAG-ATAAAGAGATCAGATTTGTGGTTGCCAGAGGTGGTG
GGAGGTGAGGG-AGGGGGAATTGGAGGAAGGTGGTCAAAAGGTACAAACTTCCAGTTAT--AAGATAAATAAATACTAGG
GATGTAACATACAACAGGAAGACTATAGTTAACAATGTCGTATGGTATATTTG-------TTAAGAGAGCAAATCCTAGG
AGTTCTCAGCACAAGGAAAATAACATTTTTTTCTTTTTCTTTTTGTATCTATATGAGATGATGG--ATGTTAACTAAACT
TATTGTGGTAATCATTTCACAAGTTAT--GTAAGTAAAATCATTACGCTGTACACCTCAAACTT-ATACGG-TGCTATAT
GTCAATTATATCTCAATAAAACTGGAA-AAAAATTTTAAA---AAGATAAATTACATTTAAA--ACAATAAACA---TTG
GTAGGTATTGGTTTTGGAGCTTTCTGGACTGAAAAGGACTGTCTTCA
>Myotis_myotis
GATGCATCAT----TGGCTCTAATAGCTATAT-CACTTAATTCTAAATTTCCAAA---AAGATAAATTATATTTAGCAAA
A-------ATCCC-ACAAATATTCCAA-----------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------TT-ACAAAT
GGGCAAAGGCCCTGAATAGACATTCCTC--------CAAAGAAGATACATGAATGGCTAACAGGTACATGAAAAAGTGCT
GAACATCACTAATCATTAGGGAAAAGTGTATAAAAAACCTAAGTGAGAT-ATCAGCTCATTCCCTGTTGTAGTG------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------ACTACTGTCAAAAAGACAAGAGATAACAAATGCTGTTGAGGATATGGAGAAAAAGGAACACTT
GTGAACTGTTGGTGGGATTGTAAA------------------GTGATATAGCCACTTTTGAAAATAGTATGGAGGTTCCT
CAAAAAAATAATAATAACACTACC---ATATGATCCAGCAATTCCACTCCTGGGGAATATATCCTAGGGAAACAAAACAC
ATATATGCAATAGACATCTGCAGCACCATG-TT----CGTAGCACTATTATTTACAGTAGCCAGGACATGGAAACAACCT
AAGTGTCCATCAACAAATTAAT-GGATAAAGTAGTTGTG--------------ATATATAT-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------GACAAAAAAAGACAAATG-----ACGGGCTCACTTACATGTT
GGTTCCAAACAACAA--------------CAACAAACTCATAG-A---GGAGATTAGATTTGTGGTTATCAGAGGCG---
-GGTGTGGGGA-------AGCTGGATGAAGACGATC-AAGGCTACACA-TTCCAGTTAT-------AAATAAGCACTAGA
GATGCAATGTACAACATGATGACTATAGTTAACACTGCTGCATGATATCTTTGAAAGCTGTGAAGAGAGTAAATTCTTTG
AGTTCTCATCACAAAGAGAA-------------CCTTTCTTGGTGTATCTATGTGAGATGATGG--ATGTTAGCTAAGTT
AATTGGGGTAGCCATTTCACAATATGT--GTAAATCAAATCATTATGCTGTACAATGAAACATATATACAA-TGCTATAT
GTCAATTATAGCTCAACACAACTGGAA-AAG----TTACA---AAGACAAGTTACATTTAAA--ACAGTAAGCC---CTG
GTAGACATTGGTTGATGGGCTTTCTCGCCTGAAAGGGACTGACTTCA
>Rousettus_aegyptiacus
GATACATCAT----TGTCTCCAACAGCTAACT-CACTTAATTCTAAACTTCCTTT---AAGATAAATTATATTTAGCAAA
A--------TCATCATCATCA-TCCAA-----------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------TTAAAAAAT
GGGCAAAGGACCTGAATAATCATTTTTTTTTTTCCGCAAAGGAGATACATAAATGGCCAACAGGTACATTAAAAAGTACT
TAAAATCAATAATAATTAGGGAAATGCATATCAATAACTAAAGTGAAAT-ATCAGCTCG-CCCTTGTTAGAGTG------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------GC-ATCATCGAAAAGACAAGAAATAACAAATGTTGGCAAGGATA-GGAGAAAAAGGAACCCTG
GTGCATGGTTGATGGTATTGTAAA------------------CTGGTACAGCCACTAAGGAAAACAGTA-----------
--AAAAATTAAAGATTGA---------ATATG------------------------------------------------
-------------------------------------TGTGTGTGTGTTATTC-----AGCCATAA--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------AAAAAAAAAAGAAATCCTGCCATTTGTGACAACATAGAT
GGATCTTGAGGTCATT--ATGCTACGTGATATAA----GACAGAGAGAGAAGAATACTG-TGTGATCTAACTTACATGTG
AAATCTAAACAGCAA--------------CAACAAAC--ATAG-AAAAAGAGGTCAGATTTGTGGTTGTCAGAGATG---
-GGTATGGGAG-AAAGGGAGTTGGATAAAGGTGGTC-AGAGGTACACACTTCCAATGAT--AAGACAAATAAGTACTAGA
TACGTAATGTACAACGTGATGACTGTAGTTTACCA-GCTGCGTTGTATATTTGGAACTTGTTAAGAGAGTGAATCCT--G
AGTTCTCATCACAAGGAAAAAAAAA----------CTTTTTTTAATATCTACATAAGTTGATGA--ATGTTAACTA-ATT
TATTATGGTAATCATTTCACAGTATAT--GTAAATCAA---CTTATGCTGTACAACTCAAGCTT-CTATAA-TGTTATAT
GTCAATTATAACTCAATAAAAGAGGAA-AAAATTTT---A---AAGATAAATTACATTTAAA--ACCATTAGCA---TTG
GTAGATATTGGTTTCTGAGCTTTCTGGCTTGTAAAGGACTCTCTCTG
>Sus_scrofa
GATACGTTAT----TGGCTCCAACAGCTACAT-CATTTAATTCTAAACTGCTGTT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------AAGGTAAATTATATTTAAAAAAAAATAAACA---TTG
GTAGCTATTGGTAGGTGGGCTTTTTGGCCTAAAAAGGA----CGTTA
>Bos_taurus
GATATATCGT----TGGCCCCCCAAAACAAATGGATTTAAGTCTAAACTCCTGTT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------AAG-----TTACATTTTAA--ATAGTAAATA---GTG
GTAGCTACTGGTTGTTGGACTTTCTGGCCTGAAAGTGTCTTTCTTTA
>Condylura_cristata
GATACATCATTTACTATCTCTAACAACTAAGT-----CAATTCTAAACTCCAGTT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------AAGATAAATGAAATTTGAA--ACAAAGAAC----TTG
ATAGATGTTAGGCTTGAGGTTTTCTGGTCTAAAAGGGACTTTCCTGA
>Sorex_araneus
AATGCATTAT----AGGATTCAACAGTTAAAT-CTCTT----CTAAACTCCT-CT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------AAAATAAATTACATTTAAT--TCCATGGACA---TTG
GTGGATTTCAG--GTTGTGCTTTT--GCCTGAAAGGGACTTACTTTA
>Homo_sapiens
GATGCATCAC----TGGTTCCAAAAGCCA-AT-CACTTAATTCTGAGCTCACATT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------AAAAGAAATTACATTTTAA--AAAATAAACA---TCA
GTGGA-ATTGGTTGTTGGACTTTCTTTCCTGCAAAAGA----CTTTA



Dog336_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------TTTTTCCAGCTTTATTGA
GGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATATACGTATACATTGTGAAATGA
TT---------ACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTACCATTTT------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------TT
TGTGTGTGGTGAGAACACTTAAGATCTAC-TCTCT-TAGCAAATTTCAAGTATACAATACAGTATTATTAACTATA--GT
CACCATGCTGTACATTAGATCTCCAGAACTTATTCATCCTGCATAACTGAAACTTTGTACCC------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------TTTGACCAACATCTCCCCATTTCCCCCACCCCCCAGCC---------------------
----CCTGGCAACCACCATTCTACTCTCTGCTTCTATGAGTTTGACTTTTTTAG--------------------------
------------ATTCCACATATAAGTGAGATCATGCAGTATTTGTCTTTCTGTGCCTGGCTTATTTCACTTAGCATAAT
GTCCTCCAGGTTCATCCATGTTGT--------------------------------------------------------
--------------------------
>Canis_familiaris
TTCTGCTGCCATGC-----------------------TGTGGCCACAGCTGAACACTGCATGCAGCCTTTATT---TCCT
AAAAGATTGTA---------CCGCCCT-------------------T-TTAT--TTTT-----------AATTTTTTTAA
GAT--------------AACATTACCTTAGTTTCAGGTGTACAACATAATGATTCAATATTTGTATATATTGTGAAATTA
TC---------AT--CAAAAAATCTAGCTAAC--ATCTGTCACCATGCATAGCTGCAATTTTT-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------TT
TTCTCGTGATGAGAACTTTTAAGATGTAC-TCTCT-TA---ATTTTCAAATATCCAAGACAGTATCATTAACAATGATGT
CACCATGCTACACATTGCATCCCCATTGCTTATTT-------ATAACTGGAAGTTTGTACT-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------TTTGACT-ACCTTCTCCCACTTCACCCACTCCCCACATCCCATCCCCTATCTACT----
----TCTGACAAATACCAATCTGTTCTGAGTTTGTTTGTTTTT----TTTTTGGGGGGGGGGGGAATTATT---------
------------ATTTCACATGGAAGTGAAATTATACAGTATTTCTCTTTCTCTGCCCAACTTATTTCGCTTAGTATAAT
CACCATAGGATGGA-------------CCTTGAGGGTTTCTTTG--TTTGTT---TTAAGATTAGAAACTACCTTCTTCT
ACCTGTTAA-CCTCCACTCACTCCCT
>Felis_catus
TTCTGCTGCCACAT-----------------------TGTGGCCATATCTGAACACTGCATGCAGC-----------CCT
GAAAAG---TA---------CTGGGTT---------------TTT-T-TTGT--TGTT---GTTGTTGTTGTTGTTTTAA
GATATAATGGACATAT-AACATC---TTAGTTTCAGGTGAAAAACATGAT------TTATTTGTATACATTGTGAACTTA
TC---------ACCACAAAAAGTCTAATTAAT--ATCTGTCACCATACATAGTTACAAATTTT-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------TT
TTCTTGTGATAAGAACTTTTAAGATCTAT-TCTCT-TAACAACTTTCAAATACACTATACAGTACTATTAACTATC--AT
CACCACGCTATACATTACATCCCCAGGACTTATTT-------ATAACTGGAAATTTGTACCT------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------TTTGACC-ACCTTCTCCCATTTCACCCA-TCCCCACATCCCCTCCCCTATCTACC----
----TCTGGCAACCACCAATCTGTTCTCTGTCTCCA--AGTTCAGCTTTTTTGGTGGTGGGG----------------CA
GACGTGGGTATTATTTTACATGTAAGTGAGACCGTAC-GTATTTGTCTTTCTCTGTATGACTTGTTTCACTTAGTATAAT
GACCAT-GGATGGA-------------CCTTGAAGCCTTTT-----TTTTTT---TTAAGATTAGAAGTTACCTTG-TCT
ACCTGTTAA-CCTCCACTCACTTCCC
>Manis_javanica
TTTTCCTGCCACCC-----------------------TGTGGCCATGTCTGAACATGACACTTGGCCTTTATT---ATCT
GAAAAGTTGCA---------TTGGTGC------------------TTTTTTT--TTCT--------------------GA
GGTATAATTGACATAT-AACATTATATTAGTTTCA-GTGTATAACATAATGATATAATATTTGTATTTA-TGCTAAAGAA
TC---------CCCACCATATGTCTAGTTAAC--AT-TATCACCATGCATAGTTATAATTCC------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------TT
TTCTTGGGATGAGATCTTTTAAGACC----TCTCT-TAGCAACTTTCTAATATACAACACAGCATCATTAACTGTA--GT
CACCATACTGCACATTCCATACCTAGGACTTACCTGCTTT--ATAACTGGAGGTTTGTACCTTTTCTTTACTACATTATT
AAATGTTTATTCCAACTAGTATACTTACTATCTGTAAGTATAACATAGCAGTTATATAGAATGATGTTATAGAATTATTG
ACTATATTCTCTATGCTGTACTTTCATCTCCATAACTAATTTATATTATAATTGAAATTCTGTGCCTCTTTATCCCCTTC
ACCTAGTTTGAAGTTTGTACCTTTGGCC-ACCTTTATCCATTTTGTCCACTTCCCACCCCCACCCCCATCTCTCCTCCCT
CATGTCTGCCAACTGCCAATCTATTTTCTGTATCTATGAATTC-GTTTTTTTGTTGG-----------------------
---------------CCACATATGCATGAGATCATACAGTATTTTTGTTTCTCTGTCTGACTTATTTCA-TCAGTATAAA
CAACAT-GGATGGA-------------CCTTGGGGGCT--------TTTTTT---TTAAGATGAGAAGTTACCTTC-TCT
ACCTGTTAA--CTCCACTCACTCCCC
>Equus_caballus
TTTTCCTGCCACAC-----------------------TGTGGCCACGTCTGAACACTACATGTGGCCTTTCTT---CCCT
GAAAAGTTGTA---------TAGTCGT--------------ATCA-C-TTTT--TTTT----------------TTTTGA
GATGTAATTAACATAT-GGCATTATATTAGTTTCAAGTATACAATATAATGATTCAATATTTGTATATATTGTGAAGTGA
CC---------ACGACGATAAGTCCAGTT-----ATCCACCACCACACACAGTTATAAAATTTTTTCTTTTTTTTTCGAG
GAAGATTAGCCCTGAGCTAACATCTGCTGCCAATCCTCCTCTTTTTGCTGAGGAAGACTGGCCCTGAGCTAACATCCATG
CCCATCTTCCTCTATGTTATATGTGGGACACCTACCACAGCATGGCTTGCCAAGCAGTGCCATGTCCACACCTGGGATCC
GAACCGGTGGACCCCGGGCCGCTGAAGCGGAACGTGTGCACTTAACCACTGCGCCACTGGACCAGCCCCTATAAATTCTT
TTCTTGTGATGAGAAC-TTTAAGATCTAT-TGTCTCTAGATAGTTTCAAATATACAATACAGTATTATTATCTATG--GT
CACGATGCTGTACGTTACATCCCCAGGACCTACTTATCTT--ATAACTGGAATTTTATACC-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------TTTGACC-CCCTTCACCCATTTCGCCTACTCCCCACGCTCACCCCCTCTGAC-------
----TCTGGCAACCATCAGTCTAGTCTCTGTATCTATGAGTTT-GTTTTTTTGGTGGTGGTGGGTTTTGTTTTTGTTTTT
GTTTTTGTTTAGATTCCACATATAAGTGAAATCATACAGTATTTGTCTTTCTCTGTCTGACTTATTTAACTTAGCGTAAT
GAACAT-GGAAGGA-------------CCTTGAGGGCT--------TTTTCT---TAAAGATTAGAAGTCACCTTC-TCT
ACCTGTTAA-CCCCGACTCACTCGCC
>Ceratotherium_simum
TTTTCCTGCCACAC-----------------------TGTGGCCATGTCTGAACACTACATGTGGCCTTTATT---CCCT
GAGAAGTTGTA---------TAGTTGT-------------------A-TTGC--TTTT---------------TTTTTGA
GATGTAATTGACATCT-GACGTTATATTAGTTTCAGGTGTACAACATAAT---TCAATATTTGTATATATTATTAAATGA
CC---------AC--TAATATGTCAAATTAAC--ATCCATCACCACACATAGTTACAAATCTT-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------TT
TTCTTGTGATGAGAAC-TTGAAGATCTAC-TCTCTCTAGATACTTTCAAGTATACAATACAGTATTATTAACTATA--GT
CTTCATGTTGTACATTACATCCCCAGGACTTATTTATCTT--ATAACTGGAATTTTATACCT------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------TTTGACC-CCGTTCACCCATTTAGCCCACTCCCCATCCTCACCCCCTCCGAC-------
----TCTGGCAACCACCAATCTATTCTCTGTACCTATGAGTTT--GTTTTTCGGTGGTGATGAGTTTTGGTTTTGGTTTT
GTCTTAG-----ATTCCACATATAAATGAGATCATACAGTATTTGTCTTTCTCTGTCTGACTTATTTCACTTAACGTAAT
GAACAT-GGATGGA-------------CCTTGAGGAC---------TTTTTT---TTAAGATTAGAAGTTACTTTC-TCT
ACCTGTTAA-CCCCTACTCACTCCCC
>Myotis_myotis
TT-TGCTGCCACCG-----------------------TGTGGCCATGGCTGAGCACTACAAGTGGCCTCTGTT---CCTT
GAAAAGTTATA---------CTGGTTTGGTTGGGGTAGGGGGGGTGT-TTGT--TTGT----------------TTTTGA
CATACAATTGACATGT-AACATTCTATTGGTTT-AGGTGTATGACATAATGATTTGGTATTTGTATACATTTCAAAATAA
TTCACCATAAGATCACAGTCAGTCCAATTAAC------------------AGTTACAATT--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------TT
TTCTTGTGGTGAGAACGTTGAAGATCTACTTCTCT-TAGCCACTTGGGGATATGTAACACAGTGTAGTTAACTACA--GA
AACCAGGAAGTACTT------------------------------------ACTTTATACCC------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CATGACT----------------------------------------------------
----TTTG-----------------CTTTGT----------------TTTTAAG--------------------------
------------ATCCCACATTTCAGTGAGCTCACACGGTTTCTGCCTTTTTCTGCCTGACTT-CTTCACTCGGCGTGAT
GAACAG-GGGTCGT-------------CCTTGAG------------TGTTTG---CTAAGATTAGAAGTTTCCTTC-TCC
ACGTGTAAC-CCCCAGCTCACTCCTC
>Rousettus_aegyptiacus
TTCTCCTGCCACCC-----------------------AGAGGCCATATCTGAAAACTACATATGGTCTCTAGT---CCCT
GAAAAATTGTA---------TTGCCTC----------------------TTT--TTTT-----------------TTTGA
GATATCATTGACATAT-AACATTTTATTCGTTTCAGTTGTACAACATAAT---TAGATATT--TACCTATTGCAAAATGT
TCTACAATAAGATCATGATACATCTAGTTAAC--ATCCATCACCACAC--AGTTATAATTTTT-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------TT
TTCTTGTGATAAAAAC--TTAAAATCTAC---TCT-TAGCAACTTTCAAATACATAAAATAGTAATATTAACAAA---GT
CGCTGTGTTCT------------------------------------------TTTATACTC------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CATGACT----------------------------------------------------
----TTTG----------------TTTTTGT----------------TTTTTAG--------------------------
------------ATTCTGCACATAAGTGAGATCATGTGGAA--TGTCCTTCTCCAACTGACTTATCTCACTTAGCATAAG
GAACAT-GCATGGT-------------CCTTGAAGGCTTTGGGTTGTTTTTT---TTATGATTAGAAGTTACGATC-TCT
ACCTGTTAGTCCCCCATTCATTCCCC
>Sus_scrofa
TTTTCCCGCCACAC-----------------------TGTGGCCACATCTGAACACTACACCTAGTCTTTATT---CCCT
GAAAGGTGGCAGACTAGAAGTTGTCTT---------------CCA-T-TCCT--TTTT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------GAAGGAATGGAAGGTACCTTC-TCT
ACGTATTAA-CCCCCATGCATCCCTC
>Bos_taurus
TTTTCCTGCCACAC-----------------------TGTGGCCATGTCTGAACACTACACATGGCCTTTACT---CCTT
GAAAAGTGGTA---------TTGTGTT--------------TATGTT-TTTT--TTTT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------GAAGGACTGGAAGTTACCTTC-CTT
ACCTGTTAA-CCCCCATGCACTCCCC
>Condylura_cristata
TTTTCCTGCCACAC-----------------------TGTGGCCAAGACTGAACACTACATGTGACCTTTATT---GCCT
GAGAAGAGGTA---------CCTCTTT---------CTTTTTATTTT-TTCT--TTTT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------GTAGTATTAGAAGTAGTTACC-TTG
ACCTGTCAA-CGCCCAAATACACCTA
>Sorex_araneus
TTTTCCTGCCACAC-----------------------TGTGGCCATGTGTTGACACTACACATGACCTGACAT---CTCT
GGAAAATGGCA--------------------------TTTTAATTTTGTTCCTTCTCT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------GCAAGAATAGACG---------CAT
CCCTATGAA-CTCCCACTC-GCCCCA
>Homo_sapiens
TTTTTCTGCCACACTGTGGCCACGTCTGAACACTACATGTGGCCACGTCTGAACACTACATGTGGCCTTCATT---CCCT
TACATGTGGTA---------TTTGGAG-----------------TTTTTTCC----AA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------TGAAGATTAGAAGTTACCTTT-TTT
ACCTATTA--TCCCCATTCAGACCCT



Dog337_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
------------------------------------------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAA
ATTGTAT-ATATTTAAG--GTGTACAACGTGATGTTTTGATATACGTATA--CATTGTGAAATGA----TTACCACAATC
AAGCTAATTAACATATCCATCACCTCACATA--------------GTTACCATTTT-TTTGTGTGTGGTGAGAACACTTA
AGATCTACTCTCTTAGCAAATTTC--------------------------------------------------------
-------------------------------
>Canis_familiaris
ATAAAACA--TCTCTGTTTT------TTTTTTTTTTAATCCTAGCTCAGGAACCTGCC---TGTTATTATTTCTCCTCCT
CCTCC-----------------------------GTCCTC-TTCCTGTTAGCTTTAGTGGGCTACAGTTGACATAAAAAA
ATGGTAAGACAGTCAAA--GTATGCCCTGTGGTAACTTGATATATGTATA--CATCGTGGAAAGG-----TCCTGTGGGC
CGCCTGAGGAACATATCCATCACCTCACATGGTTGTC--------TTTTTTTTCTTTTTTTTTCCTGGTGAGAACATCTG
AGTTCTACCCTCTT-------------TCCCTTTCTTCTTTTTTATATTTGT---AATTTAACGCCCG-GAAGACACTC-
TGTTGTGCCAGACTAAGGAGGCAGGTCACCC
>Felis_catus
GTAAACCA--TCTCCGTTGG------TATTTTTTTCAATCCTAGTTGGGGAATCT-CC---TG-TATTATTTCTCCTCCT
CCTCC---TCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTTGTTAATTTCAGCCTTAGTGAGGTACAGTTGACCTGT-AAA
ATGGTAAGGTATTTACA--GTATACATTGTA---------------------------CAAGGGC-----TTCCTCCATC
CAGGTAATGAACCCATTCATCACCTCACATAGGCTTTTTTAAATTTTTAATTTTT--TTTTTTCCTGGTGAGAACATTTA
AGTTCTACTCTCTT-------------TGTATTTCTCCTTTT--CTATTTTT---AATTTAATGCCTG-CAAGATACTC-
TTTGGTGCTAGATGAAGGAGTTTGATTACTT
>Manis_pentadactyla
AAGAAACGCCTCTCTGTTGG------TATATTTTA-GAGCCTAGGTAGAGAATGTAAC---TG-TATT-CTTCTTTT---
-----------------------------------------AAAATCTCAGCTTTATTGAGGTATAACTGCTGTGTAAAA
ATTGTATGATACTTAGAGAGTATACATTGTGATGATTTGATATATGTACA--CATTGTGGAAGGA-----GTCCCACATC
TAGTTAGTGATCACACCCATCACCTTGAATA--------------TTCACCTTT---TTTTTTCTTGGTAAGAGCATTTA
ATTTCTACCCTCTT-------------GGTATTTCTTCTTTT--ATACTTTT---AACTTAATGCCTG-GAATACACCC-
TTTTGTTCTAAATACAGCATTTAGATTACTT
>Equus_caballus
AAGAAACATCTCTCTGTTGG------TATATTTTT-GATGCTACATAGGAAATCTGCT---TG-TATTTCTTCTTTTCTT
TTTTT-----------------------------------TAAAATTTCAGCTTTATTGAGGTATTATTGACATAT-AAA
ATTGTAAGACATTTAAA--GTACATATTGTAGTGATTTGATAT---TATGTACATTGTGAAAGGA-----TTCCCTCATC
CAGTTAATGAACAATTCCATCACCTCACATA--------------CTTATCTTT---TTTTTTCTTGGTGAGAACATTTA
GGTTCTACTCTCTT-------------TCTATATCTTCTCTG--ATATTTTT---AATTTAATACCTG-CAAGACACCC-
TTTTGTGCTAAATTAAGGCGTTAGATTAGTT
>Tapirus_indicus
AAGAAACGTCTCTCTCTTGG------TATATTTTT-GATCCTAG-TAGGGGATCTGCC---TA-TATTTCTTCTTCTTCT
TCTTT-----------------------------------TTTAATTTCAGCTTTATGAAGGTATAATTGTCATAT-AAA
ATTGTAAGATATTTAAA--GTGTACATCGTGGTGATTTGATATATATATATGCATTGTGAACGGA-----TTCCCCGATC
TAATTAACGAACAGTTCCATCACCTCACATA--------------TTTACCTTTT--TTTCACCTCGGTGAGAGCATTTA
AATTCTACTCTCTT-------------TCTATTTCTTCTCTT--AAATTTTT---AATTTAATGCCTG-CAAGACACC--
TTTTGTGCTAAATTAAGGAGTTAGGTTAGTT
>Myotis_myotis
AAGAAACATCTTTTTATTGGTATATATATATTTTT-TATCCTAGATAGGGAATCTGCC---TG-TATTTTTTTTTCTCCT
TCTTC----------------------------------TTTTAACTTCAGCTTTATGGAGGTATAACTGACACAT-AAA
ATTGTAAGATATTTAAA--GTGTACATTGTGGTGATTTGATATATGTATA--CAATGTGAAAGGA---ACCCCCTCCTCG
TAGCTAACGAACAAATCCATCACCTCACATG--------------TTTCTCTTTTTGTTCTTCCTTGGTGAGAACATTTA
AGTTCTACTCTCTT-------------TGTATTTCTCCTTTT--ATATTTTT---AATTTAATGCCCA-GAAAATATCC-
TTTTGTGCTAAATTAAGGACTTAGGTTAGTT
>Rousettus_aegyptiacus
AAGAAACATCTCTCTGTCAGTATA--TATATTTTT-TATCCTAAGCAGAGAATCCGCC---TG-CATTTCTTCTCCTTCT
TCCCT------------------------------TCCTC-TTAATTTCAGCTTTACTGAGGTATAATTGACATAT-AAA
TT--TCAGATATTTAAA--GCGTACATCATGGTGATTTTATGTGGAAAGA------GTGAAAGGACATCTTTCCCCCGTG
TAGTTAATGAATATATCCATC-----------------------------TTTTCTTTTTCCCCTTGGTGAGAACATTTA
AGTTCCACTCTCTT-------------TGTATTTCTTCTTCT--GCATTTTT---AATTT---------AAAGACATTCT
TTTTGTGCTAAATTAAGGAGTTAG-----TT
>Sus_scrofa
AAAAAAGAGCTCTCTGTTGG------TATATTTGT-GATCCTAGGTAGGGAATCTGCC---CA-TATTTCTCCTTTT--A
TTTT----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------AAT-----GCCTG-GAAGACACCC-
TTTTGCACTA-----AGGGGTTAGATGAGTT
>Bos_taurus
AAGAAACATCTCTCTGTTGG------TTTACTGAT-GATCCTAGGTAGAGAATCTGTC---TG-AATTTCTTCTC----A
TTTTT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------AACTTGATGCCTG-AAAGACACCC-
TTTGGGGCTAAGTTAAGAAGTTAGATTAGTT
>Condylura_cristata
AAGAAACATCTTTTTAATAA--------TATCTGT-GATCCTAGGCAAGGACTTTTCT---TG-TT-TCCTTCTTTTTTG
TCTTT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------AATTCAATGCCTG-GGAGATATA--
TTTTGTGCTA-----AGGAACTAGGTCAGTT
>Erinaceus_europaeus
AAGCACGGCCTCTCTGCGGG------AGAGTCTGT-GATCCTAGACAGGAAAGGAGCC---TG-CATTTCCTTTCCCGCA
GTTTC---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------AGTTCAATGCTTG-GGAAATAAGC-
-TTTGTGGCATGTTAAGGAGTT--TTTTATT
>Homo_sapiens
AAGAAACACTTCTCTGTTGA------TATATTTGT-GATCTTAGATAGGGAATCAGCC---TG-CATTTTTTCTTTTATA
TTTTT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------AATTGAATACCTATAAAGACACCC-
TTTTGTGTTA-----AGGAGTGAGATTGGTT



Dog339_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
-------------------------TTTTTCCAGCTTTATTGAGGTATAATTGACA---------------AATA-AAAA
TTGTATATATTTAAGGTGTACAACGTGATG-TTTTGATATACGTATACA-----TTGTGAA-ATGATTACCACAATCAAG
CTAATTAACATATCCATCACCTCACATAGTTACCA----T-TTTTTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCT
TAGCAAATTTCAAGTATACAATACAGTATTATTA-----------------ACTATAGTCACCATGCTGTACATTAGATC
TCCAGAACTTAT---TCATCCTGCATAACTGAAACTTTGTACCCTTTGACCAACATCTCCCCATTTCCCCCACC------
--CCCCAGCCCCTGGCAACCACCATTCTACTCTCTGCTTCTATGAGTTTGACTTTTTTAGATTCCACAT-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------ATAAGTGAGATCATGCAGT
ATTTGTCTTTCTGTGCCTGGCTTA--------------------------------------------------------
--------------------------------------------TTTCACTTAGCATAA---------------------
--------------------------------------------------
>Canis_familiaris
AATTTTCCATTTGGGAATGTATACCCCTCAGACCATTT-CAAATGAATTAT-----------------------------
-AA--------TTTTTTTATTG--------------------AGGTACAATCGACA-----------------TATAATA
TTCTATTAGCTTCAGGTGTACAACATTAAGATTTTGATGTTTGTGCACA-----TTACAAACGTCATCATCACAATAAGT
CTAGTTACC--ATCCACCACCATACATGGTTGAAA----T-TTTTTTTTAGGTGACAAAAACCTTTAAGATGTACTCTCT
TAGCAGCTTTCCTATAGACAATA-AGTATTATTA-----------------CCTATAGTCACCATATTGTACATTACATC
TCCATGATTTAT---TTATTTT--ATAACTGTAGGTTTGTACCTTTTGACCCTCTTCACTCATTTTACTCACTTCCCACC
CACTCTCTCCTTTGGCAACCACCAGTCTGTTTTCTACATTTATGAACTTGGCTTTTTTGTTT---ATTTG----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------GTTGGTTGGTTGGTTGGTT
GGTTGGTTGGTTTGATTTGGTTTG--------------------------------------------------------
--------------------------------------------GTTTG-------------GTTTCTGATTA---TATT
GGTCACAGGTAT--ATATTATTGT-GATATGGAGGTT-ATTCACCTTGAA
>Felis_catus
AATTTTCCATTTGAGAACCTGTACCCTTCAGACCATTT-CAAATGAGTTGT-----------------------------
-AAT------TTTTTTTTATTG--------------------AGGGACAATTGAGCTTTTTTTATTGAGGGACAAAGCTA
ATATATTAGCTTCAGGTGTACAACATTAATC-TTTGATGCTTGTATACA-----TTGCAGCAATGATCATCATGGTAAAT
CTAGTCACC--ATCCATCACCATACAGAGTTAAAT----T-TTTTTTTCATGTGATGAGAACTTTGAAGATACAGTCTCT
TAGTAACTTTCAAATACGCAATA-AGTATTATTA-----------------CCTATAGTCACCATGCTGCACATTACATC
CCCATGACTAAT---TTATTTT--ATAACTGGAAGTGTGTACCTTTTGGCCCCTTCCATC-ATTTCACCCATTTCCCACC
TACCTTCTTCCCTGGTGACTACCAATCCGTTTTCTGTGTTTATGAGCTTGGCTCTTTTG---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------TTTGTTTAGTTGGTGTG--------------------------------------------------------
--------------------------------------------GTTTG-------------GTTTCTGATTG---TATT
GGTCATAGGTGT--GTATCACAGT-GATGTAGAGGTT-ATGTGCCTTGAA
>Manis_javanica
AATTCTCCATTTGAGAACCTGTGAATTTCAGACCATTT-CAAGTGAATTAT----------------ATATATATATAT-
ATAT---------TTTTG-TTG--------------------AGGTACAGTTGACA-----------------TATAACA
TTATATTAGCTTCAAGT-TACAATATAATGA-CTCCATATTTATATATACAGTATTGCAAA-ATAATCACTACAATAAGT
CTAGTTACC--ACCCATAA--AAATATAGTTACAAAAA-G-ATTTTTTTATGTGATGAGAACTTTTAAGATTTACTGTCT
TAGCATCTTTCAAATAAGCAATACATTATTACTA-----------------ACCATAGTC---ATACTGCACAGTACATC
CACAAGGCTTGT---TTATTGT--CTAACTAGAAGTTTGCACCTTTTGACTGCCTTGATCCACTTCACCCCCCT------
-GCACTGTCCTCTAGCAACCACCAATTTCTTCTCTGTATCTCTGAGCTTAGTTTTTTTGTTTTGTTTTTGAGGTAGGAAA
AGTACTAGTACTGGCTGAACGGATGGCTAACCCGGGAGAGCATCAACAGGATGTGGTCACCCACTGGTATAAACCAGTTG
GTTCCAATATGGAGGACAGTTCAACTCTCAAGTCACCCTCACCCAAAGCTCATTATAGACTCATTAGCCTACTGAAAATC
ACTGCCCTCAGCACCATGATTGCTCTGAGGCAGACCATGTAAGGAGAAAAGAGGGTGTCAGACTATTTCCTCCAAATCCC
CCCCCCCTATTCTAAAAAAATCCCACCTATCCAGATGATATTCCACCTTTGGCTTAAACTTTAGCTATAGACACCTAACG
CAAACCTCACCAAGCTGCTTACCTTTTGAGCATTCCTGCACTCCCTCCTTGAGTGTGTACTATTGCTTTATTAAAATACT
CTTTGCTTGCACTTGCTTGACCTGCTTATGAATTCTTTCTCGGCTGGAGTCAAGAGCCCTCTCCTGGCTTGAGGTCACAC
CCAGAGCGCAAGAAGACCTCCCCAGACTGGATTTCCTGACAGCACTTTG-------------ATTTCTGATTG---TGCT
GGCCATAGGTGT--GTATCACAGT-GATATGGAAGTT-ATTTGCCTTGAA
>Equus_caballus
AATCTTTGATTTGAGAACCTGTGCCCTTTAGACCATTT-CAAGTGAACTGT-----------------------------
-A---------TTTTTTTATTG--------------------AGATATAATTGACA-----------------TATAACA
TCGTACTAGTTTCAAATGTACAACATAATGA-TTTGATATTTCTATACA-----CTTTGAA-ATGATCACCACAATAAGT
CTGGCTAAC--ATCCATCACCATACATAGTTACAA------TTCTTTTCATGCGATGAGAAATTTTAAGGTTTATTCTCT
TAGCAACTTTCAAATACGCAATACAGTATTATTA-----------------ACTATGGTCAGTACGATGTACATTACATC
CCCATGACTTAT---TTATTTT--ATACCTGGAAGTTTGTACCTTTTGACTCCCTTTTCCCA-CTCCCCCCACCCCATCC
CACCCCCTCCTCTGGCAACCACCAATCTGTTCTTTGTGTCTATGAGCTTTTTTTTTTC----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------TTTGCGTACTCGTTTTG--------------------------------------------------------
--------------------------------------------TTTTG-------------ATTTCTGATTG---TATT
GGCCATAGGTGT--GCATTACAGT-GATATAGAGCTT-ATTTGCCTTGAA
>Ceratotherium_simum
AATTTTCCATTTGAGAACCTGTGCCCTTCAGACCATTT-AAAATGAATTGT-----------------------------
-AAT------TTTTTTTTATTG--------------------AGGTATAGTTGACA-----------------TATAACA
TTATATGAGATTCAGATGTACAACATAACGA-TTCTATATCTATATACA-----CTGCAAA-ATGATCTCCACAATAAGT
CTAGTTATC--ATCCATCATCATACGTAGTTACAC----TTTTTTTTTCATGTGATGAGAACTTTTAAGATTTATTCTCT
CAGCAGTGTCCAAATGTGCAATACAGTATTATTA-----------------ACTATGGTCACTATGCTGTACAT------
-----GACCGAT---TTATTTT--ATAACTGGAAGTTGATACCTTATGACTCCTTTTACCAATTTCCCCCCACCCCACCT
CACCCCCTCTTCTGGTAACTACCAATCTGTTCTCTGTATCTATGAGCTTGTTTTTTTT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------T-----------GTTTG--------------------------------------------------------
--------------------------------------------TTTAG-------------ATTTCTGATTG---TATT
GGCCATAAGTGT--TCATTACAAT-GATATACAGGTT-ATTTGCTTTGAA
>Myotis_myotis
GA-TTTCCATATGGGAACCTCTG--CTTCAGAACATTGTCAAACAATTTCC-----------------------------
-AAAAG----TTTTTTTTATTG--------------------AGATATAATTGACA----------------------CA
TTACATTAGTTCCAGGAGTACAACATAATGA-TTTGATCTTTGTATCTA-----TTGCAAA-ATGACCACCAAAATAAGT
CCAGTTACC--ATGTTTTAC--TACATAATTTCAAAAATTAATTTTTTCACGTGATGAGAACGTTTAAGACTTATTCTCT
TAGCAACTTTCAAATCCAAAACACAGTATTAACAGGAGTAAGGGACAAAATACTGTCGTCACCACACTGTACAT------
--CACAGCCTATGCCTTCTTTT--ATAACTGGAAGTTTGTACTTTTTAACCCATTTTGCCCA----CCCCCAC-------
--CCTCCACCTCTGGCGACCACGAATACATTCTCTGCATCTATGAGCCTGGTTTTTGC----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------TT----------GTTTG--------------------------------------------------------
--------------------------------------------TTTTG-------------CTTCCTGATTG---TATT
GGCTGCAGATGT--GCATTATAGT-GATACAGAGGTT-ACTCGCCTCAGA
>Rousettus_aegyptiacus
AATTTTCCATTTGAGAACCT--GCCCTGTGGACCACTG-CGCACGAACCAT-----------------------------
-AGAAAA---GAAAAAGCATTG--------------------AGGCGTAATCGACG-----------------TACAACA
TGATATTAGTTTCCAGTGTACGAATTACCGA-CTCGACATTTGTACACA-----TTGCAAA-ACGATCACCACGATAAGT
CTAGTTCCC--ATCCGCCACCGTTTAT--TTACAACGATT-AATTTTTCGGGCGAGAAGAACTTTTATGATTTGCTCTCT
CAGCGGCTTTCAAATACGCAGTGCAGTAGCGTTA-----------------CCTTTAGTCGCCGTGCCGTNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------NNNNNNNNNNNNNNNNN--------------------------------------------------------
--------------------------------------------NNNNN-------------NNNNNNNNNNN---NNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>Sus_scrofa
AATTTGCTGTGTGAGAACCTGAGCCCTTTGGACCATTT-TAAAGGAATTAT-----------------------------
-AAA-------ATTTCTGATTG----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------TATT
GTCCATCCATGT--GAATTACCAT-GATATAGAGGTT-CTTTGCCTGGAA
>Tursiops_truncatus
AATTTTCTAATTGAGAAACTGTGCCCTTCAGACAGTTT-TAAATGAATTAT-----------------------------
-ACA-------ATTTTTTATTG----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------TATT
GGCTATACATGT--GTATTACAGT-AATAGAGAAGTT-ATTCACCTGGAA
>Condylura_cristata
GATTCCCCATTGAAAAACCTTTGCCCTCCAGACCACTT-CAAGTGAATTGT-----------------------------
-AAA-------ACATCTGATTC----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------TGTT
GGCCACAGACAA--GTGCTACAGT-AACATTGAAGCT-ATTTAACTGGAA
>Erinaceus_europaeus
AATTTTTCGCTGGAGAATCTGTGCTCTTCAGATTGCTT-CAAACAAATTGT-----------------------------
-GAA-------ATTTCTGTCTG----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------TAGC
ATCCATAGGT-TGAATGTTACTGA-CACATAGAGGCCGATATGACTTAAG
>Homo_sapiens
ACTTTGCCATTTTTAAACCTGTATTCTTCATATCATTT-CAAATGAACCGTTCCGGTTGTATTGGCCATGTGTGTCTATT
ATAA-------GCTTCAGCTTG----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------TATT
GGCTGTGTGTGTGCGTATTATTGCAAATATAGAAGTC-ATGTGTCTTGCA



Dog340_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAAT-----TGTATATATTTAAGGTGTACAACGTGATG
TTTTG--AT--ATACGTATACATTGTGAAATG---ATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGT
TACCATTTTTT-TGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAAATTTCAAGTATACAATACAGTATTATTA
ACTATAGTCACCATGCTGTACATTAGATCTCCAGAACTTATTCATCCTGCATAACTGAAACTTTGTACCCTTTGACCAAC
ATC-------TCCCCATTTCCCCCACCCCCCA-----GCCCCTGGC--------AACCACCATTCTACTCTCTGCTTCTA
TGAG-TTTGACTTTTTTAGATT-------CCACATATAAGTGCATGC---------------------------------
--------------------------------------------
>Canis_familiaris
GGTTTCCTTGGGGATC--TGTGTCTTG------TGCTCCACTTAAGACTC------TTTCC---AACTTCCTATGAA-TT
TTT-----CCTCCAGTTTTGTTGAGATATA----GCATAT---AAT-----TGCATTAATTTAAGGTGTGTAACATAATG
ACTTG--AT--AC-CTTATACATTGCAAAATA---ATCACCACACTAAGTTTAGCTAGC--ATCCATCATCACATAT---
-ACAATTCTTT-------TGATGAGAACTTTTAAGATCTACTCTCTCCACAGTTTTTAAATATGCAATACAGTATTGCTA
CCTATAATCACCATGCTCCATATTATAC----------------TTTTAC--AAATGCAAATTTGAACCTATTGACCACT
TTCACCAACTTCTTTCTTCTGTCCACCCC--AACCAAGCCTCTTGCAACCACCAAACCACCAATCTGTTCTCTG------
-----TTGGATTTTTTCAGATT-------CCACATAT-------------ACTTGCTTATTACTTGTC---TTTCAGTGA
GGGTACATCCCCTAAATTCTCAGCCAGCCACACCTTTTTGGGGG
>Felis_catus
GGTTTTCTTGAGGCTC--TATTTCTGG------TGTTCAACGTACGGCTC------TTCCC---AACTTTCTATGACTTT
CCC---CCCGCCCGGTTTTATTGAGATATAATTGAGATAT-GACATATAAGTGCATCGGTTTAACGTGTACAGCATAATG
GCTCG--CT--AT-CTTGTGTGCGGCAGAATGGTAATAACCACAATAAATTTAGTTAAC--ATCCACCTTCACACAT---
-ACAATTCTTT---CTTTTGATGACAACTTTGAAGATCTAATGGC---ACAAGTTTTACATGTGCAATACAGTCTTGCTA
ACTAGAGTCACCATGCTGTACGGTAAGC-------------ATGCCTCAC--GACTGCAAGTCTGAACCCTTTGACCGCC
TTCACCCGCTTCCTCCTTCTCCCCACCCCC-AGCCACGCCTCTGGC--------CGCCATCAATCTTTTCTCTG------
-----TTGGATTTTTGAAGATT-------CCATATAT-------------TCTCACTTATCACTTTTC---TTGCACTCA
GGGTGCATCCTTTAAATTCGAAGCCAGCCACACCCCTCTTTGGG
>Manis_pentadactyla
GGTTTTCTTGAGGGTCACTGTGTCTGC------TGTTCAATGTGTGACTTTT----TTTCC---ATCTTCTTATGT--TT
TCC-----CCCCCAGTTTTGATAAGAGATAATTGGCATGT-AACAT-----TGTATTAGTTTAAGGGGTGCAACATAATG
-TTTGACATACATACATATATATTGCCAAAGG---ATCACCATCCTAAGTTTAATTCAC--ATTCATCACCTTCAACAGT
CACAATTCTTCTTTCCTGTGATGAGAATTTATAAGATCTACTCTCTTAGCAACTTGCAAATAT-----ACAGTATTATTA
ATTAAAGTCACCTTGCTGTATGTCATATTGCCAGGACTGATTTGTCTTTC--AGATGACAGGT-GCACC-TGTGACCCCC
TTCA--------CCCTTTCCCCTGACCCCAACGCTATGTCTCTGGA------------------------TCTA------
-----TTGGTTTTGTTTTGTTTTTCTCCCCCACATAT-------------ACTTGCCTGTTACTTTCC---TCTCAGTGA
AGATTCATGCTCTAAAATCATGGCCAGCCACACCCCTCTTTGGG
>Equus_caballus
GGTTTTCTCGAGGATCCCTGTGTCTTGATCACTGAGTCAACTTATGACTCTT----TTTCC---ATCTTCCTATGAC-TT
TTT-----CCCCCAGTATTGTTGAGATATAATTGACATAT-AACAT-----TATATTTGTTTCAGGTGTTCAACATAATG
-TTTG--AT--ATAGGTACATATTATGAAATG---GTTACCACAATAAATTTAGTTAAC--ATTCATCACCTCCCATAGT
CACAATTCTTTTGACTTTAGATGAGAACTCCTAAGATCTACTCTCTTGGCAACTTTCAAATATCCACTACAGTATTGTTA
ACTATAGTCACTATGCTGTAAATTACATCTCCAAAACT---TTGTCTTAC--AACTGGAAGTTGGTACGTTTTGACCATC
TTCATTCATTTCTACCTTCATCTCGCTCCCCAACCATGCCTCTGGC--------CACCACCAATTTGTTCTCTGTTTCTA
TAAGTTCAGTTTCTTTTAGCTT-------CTGCGTAT-------------ACTTGCCTATTACTTTTC---TTTCAATGA
--GTTTATACTTTAAAGTCACGGCCAGCCACACCCCTCTTTGGG
>Tapirus_indicus
GCTTTTCTTGAGGATCACTGTATCTGG------TGTTCAACTTATGACTCTT----TTTCC---ATCTTCCTATGACATC
CCC-----CCCCCAGTTTTGTTGAGATATAATTGGCATAT-AACAT-----TATATTTGTTGCAGGTGTACAATACAATG
-TTTG--AT--ATACGTATATATTCTGAAATG---GTTACCTCAATAAATTTAGTTAAT--GTTCACCACCTCACATCGT
CACAGTTCTTTTTTCTTTTGATGAGAACTTTTAAGATCTACTCTTTTAGCAACTTTCAAATATACAATACAGTATTGTTA
ACTATAGTCACTATGCTGTAAATTATATCTCCAAAACTTACTTGTCTTAC--AATGGGAAGTTTGTACCTTTTGACCATC
TTCATCCATCTCCTCTTCCTTCTCACTCACCGCCCATGCTTCTGGC--------AACCACCA---------CTATTTCTA
TGAATTCAGGCTTTTTTAGATT-------CCACATGT-------------ACTTGCCTATTACTTGTC---TCTCAATCA
GTGTTTATCCTCTAAAATCACAGCCAGCCACACCCCTCTTTGGG
>Rhinolophus_ferrumequinum
GGTTTTCTGGAGGACCA--GTGTCTGG------TGTTCAACGTACGACTCTT----GGTCC---ATCTTCCTACGAC-TT
TTT--------TCAGTTTTGTTGAGCTATGACTGACATAT-GAAGT-----TGCTTTGGTCTAAGTTGCACACCTTAATG
-TGCG--AT--ACGAGTATGTGCTGTGCAGCG---ATCACCTCAGTAAGTTTGGGTAAC--GCCCGTCACCTCACATAGT
CACAGTCGTTT-----CCTGGTGAGAACTTTTAAGGTCCACTCTCTTAGCAACTTTCAAATATACAGGACGGTGTCGTTC
CCT--GGGCGCCATGCTGTAC-TGACATCCCTCGGG---------CTTAC--GACTGGAAGTG-GTACCGTTTGGCCACC
CTCA-------CCCCTTTCTCCCCCACCCCCA-----GCCTCCGGC--------AACCTC--GTCTGTTCTCTG------
-----TTGG--TTTTGGGGGTT-------CCACACAC-------------ACTTGCCTGTAACTTTCC---TTCCAGCAG
GTGCTCATCCTCTAAAATCACGGCCAGACGCACCCCTCTTTGGA
>Pteropus_vampyrus
GGTTTCCTCGA---TCACAG--TCTGG------TGTTCCACTCAGGACTCTT----TCTCC---ATCTTCCTGTGGTTTT
TTT-------TCCAGTTTGGTGGACGTGTAATTGGCACGT-GACAT-----CGCGTTGGTTTAACG--------------
-TCTG--ATGCACGTGTATAGGGTGTGAAATG---GTCACCGCAGTAA-----GTTAAC--GCCCATCACCTCACATAGT
CATAGTTCTTTCTATCTTTG----------------------------GCAACTTGCAAACACGCAGTGCAGTGTTGTTT
ACTGTGGTCACCCCGCTGGACATCACATCCCCACCGTGTATTTGTCTGAT--GGCTGGAGCTTCGTACCTTTTGACCACC
TGCACCCACTTCCCACTTCCCCCG--CCCCTACCTGAGGCCCTGGC--------AGCCCCCAGCCTGCTCTCCT------
-----TTGG--TGGTTTAGACT-------CTGCGTAT--------------CCTGGTAACTTTTTTCT---TTGCTGTGA
GTGTCCCCTCTGGAACACCACGGCCAGCCACGCCCCGCTTCAGA
>Sus_scrofa
GGTTTTCTTGAGGATCACTATGTCGAG------TGTTTAACTTATGACTCTTT---TTTCC---GTATTCCTGATAC-TT
-TC-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------TTACAATGA
GTGCTCATCCTCTAAAATCACAGTCAGCCACACCCCTCTTCAGG
>Bos_taurus
GGTTTTCTTGAGGTTTGCTATGTCTGG------GGTTCAACTTGGGACTCTT----TTTCT---ATCTTCCTAATAC-TT
GTC-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------TTACAATGA
GTGTTCATCCTCTAAAATCACAGCCAGCCACACCCCTCTTTGGG
>Condylura_cristata
GGTTTTCTTGAGGGTCACTGTGTCTGG------TGTTTAGCTTATGACTGAT----TTTCC---ATCT----ATTAC-TT
TTC-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------TTTCAATGA
GTGTTAATCCTCTAAAATCATGGCTA-CCACACCCCTCTTTGGG
>Solenodon_paradoxus
GGCTTTCTTGAGGGTAACCTGCTGTCC------TGTTCAACTTCCAACTCTT----CTTCT---ATCT----------TT
GTA-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------TTTC--TAA
GTGTTGATCCTCCCACAT-ACTGTCAGCCACACCCCTCTTTGGG
>Homo_sapiens
GGTTTTCTTGGAGACCGTGGTGTCTGG------TGTTCATCTGATGACACTGCTTTTTTTG---CTTTTCCTCCAAC-TT
TTC-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------CTTCCATGA
GTGTCTATCCTCTAAAATTATGGCCAGCCACACCCTTCTTTTGG



Dog341_LINE

>L1MA9_3END
---------------------------------------------------------------------------GATGT
TGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGTACAGCATGGTGACTAT-----
--------AGTTAATAATACTGTA-TTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCACCACACACA
AAAAAATGGTAACT-ATGTGAGGTGATGGATATGTTAATTAGCT-TGATTGTGG-TAATCATTTCACAATGTATACG---
---TATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAA
AA-------------------------------------------------------------------------
>Canis_familiaris
TAAGCAGTCATCAGTTTCAGTCCAGCTAAAATTG---ACACTT--CCTACAGAG-T---TGAAAACCAATTT--------
------AAGGATACAAACTTACAACTAGG--AGATAAGTAAGTTCTAGAAATCTAATGCACAACTCGGTGATTAT-----
--------AGTCAACAATACCATA-CTGTAAATTTCAAAGTTGCCAGAGGACTAAATCTTAACTGTTCTCAGCACA-AAA
GAGAAATTATAAAT-ATGTGATATGATAAAGGTATTAGTTAACA-CTACTGTAA-TAACCACATTGTAATACATAAACGT
AAGTGTACCAGAACAACACAATGTGCCCTTTAAACTTACACAA-TATTATATATCAATTATATGTCAGTTTT--------
-------AAAAAAAAC-----T---CAGCAGGCAAATCTGATTCCTATCTGATCATAATGGAAGTCTCTAGCCAT
>Ailuropoda_melanoleuca
CAAGCAGTCATCAGTTTCAGTCCAGTCAAAATTG---ACACT---TCTGCAGGA-C---TGAAAACCAATTT--------
------AATGGTACAGCCTTACAACTAGT--AGATAAATAAGTTCTGGAGATCTAATGCACGACATGGTGATTAT-----
--------AGTCAACAATACCATA-TTGTAAATTTCAAAGTTGCTAGCAGACTAAATCTTAACTGTTCTCAGCACA-AAA
AAGAAATTATAAAT-ATGTGATATAATGAAGGTATTAGCTAACA-TTACTGTAA-TAATCACAT-GTAATACATAAGCAC
AAATGTACCAAAACAACACCGTGCACTCTTTAAATTTACGTAA-TACTATATGTCAATTATATGCCAATTAAAAA-----
-----AAAAAACTTAT-----T---CAGCAGG-GAATCTGACGCCTATCTGAGAATAATGGAAGTCTCTAGCCAT
>Manis_pentadactyla
TAAGCAGTCTTAGATTTCAGTCTGGCCAAAATTG---ACACTTA-CCTGCAG-G-T---TCAAACCC-ATGT--------
------AAGGATATAAATTTGCAACTAGT--AGATAAGTAAGTTCTGGAGATCTAATGCTCAGCATAGTGATTAC-----
--------AGTCAACATTACTGTG------AATTTCAAAGATGCTAAGCACTAAAATCTTAACTGTTCTCAACACA-AAA
AAGATAACA------ATGTTGCATGATAAAGGCATTTGCTAACAGCTAATGTAGTTAATTATATTGTGATATATGAA---
---TGTATGAAACCAACATGATATACACCTTAATCTTACATAA-TATTTTATTTCAATTATTTCTCAATTT---------
-----AAAAAACTGTT-----T---CAGCTGG-GAATCTGGCTTCTGTC--AGGAAAATGAAAGTATCTGACTAT
>Equus_caballus
TAAGCAGCCATCAGTTTCAGTATTGTCAAAATTG---ACACTTT-CCTGCAGAG-T---TCAAAACCAATAT--------
------AAA---ACAAACTTACAACTAGT--AG----ATAAGTTCTGGAGATCTAATGCACAGCATAGTGATTATATTGA
GGATAATAAGTCAACAATGCTATATTTATAAACTTCAAATATGCTGAAAGACTAAATCTTAACTATTCTCAACACA-AAA
AGGAAATGATAAAT-ACGTGACATGATAAACGTATTAGCTAACA-CTAGTGTAG-TAATCATATTGCAATATATAAA---
---TGTATCAAGTCAGCACGTTGTACACCTTAAACTTATACAA-TGTTATATGTCAGTTATATCTAAAGTGAA-------
-----AAAAAACAATT-----T---TAACAGG-GAGTCTGGCTCCTATCTGAGGTTAATGGAAATCTCTGGCCAT
>Tapirus_indicus
TAAGCAGCA--CAGTTTCAGTACTGTC-AAATTG---ACACATT-CCT-CAGAG-T---TCAAAACCAATGT--------
------AAGGGTACAAACTTACAACTAGT--AGATAAATAAGTTCTGGAGATGTAATGCACAACATAGTGATTAT-----
--------AATCTACAGTACTGTATTTATAAACTTCAAATATGCTAAGAGACTAAATCTTAACTGTTCTTAACAAA-AAG
AAGAAATCATAA---ATATGACAT------------AACTAACA-CTACTGGGG-TAATCATATCGCAATATATAAA---
---TGTATCAAATCAACACGTTGCACACCTTAAACTTATACAA-TGTTATACGTCAATTATATCTCAATTA---------
-----CAAAAACAATT-----T---TAGCGGG-GAGTCTGGCTCCTATCTGAGATTAATGGAAGTCTCTGGCCAT
>Myotis_myotis
TAAAAAGCCATCAGTTTCAATCTTATCAAAAACG--GACACTTT-TCTTCAGAG-T---TCAAAACTAATTT--------
------AAGGATACACATTTACATCTTGC--AGATAAATAAGTTCTGGAGAGTTAATGCACAACCCAGGAATTAT-----
--------AGTCAAAAATACTGTA-TTATAAACTTCAAACATGCTCAAAGATCAAATCATAAGTGTTCTAAAAACA-AAA
AAGAAATAATGAAT-ATGTAACATGATAAAGATATTAGCTAG-A-GTACTGTAT-TAATC-TATTGTAAAATATAAA---
---TGTACCAAACCAACACATTATACATC-TAAATTGACACAA-TACTATATGTCAATTATCTTCTATATATA-------
-----TAAAA-----------------------------GGTTCATATCTGAGGATAATGAAAATCCCTGGCCAT
>Rousettus_aegyptiacus
TAAGCAGCCATCAGTTTCAGTCTTGTCAAAATTG---ACACTTT-CCTGCAGAG-T---TCAAAACCAATTT--------
------ATGGGTACAAATTTACAACCAGT--AGA---------TCTGGAGATCTAAAAAACAACATAGTAATTAT-----
--------AGTCAACGATACTGAA-TTATAAACTTCAAAGATGTTTAGAAACTAAATCTTAACTGTTCTCAACACA-AAA
AAGAAATAATAAATAATGTAACAT------------------TA-CTACTATAG-TAATCATATTGCAATATATAAA---
---TGTATTAAACTAACACATTATAGACA-TAAATTTACACAA-TATTATATATAAATTAAAAACAA-------------
-----CAACAACAATT-----T---AAGCAGG-CAGTTAGGCTCCT----GAGGGTAATG-AAGTCTCCAGCCAT
>Sus_scrofa
TAAGCAGCCACCAGCTTCCATTGTGTCAAAACTG---ACTCTTG-CCTA-AGAG-T------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----CAGGACCAGTT-----T---CAGCAGA-GA---CGCACCCTCCCTGAGGGTCACGGGTGTCCCTCTCTGT
>Bos_taurus
TAAGGGGCCATCAGCTTCAGTCCTGTCAAAACTG---ACACTTT-CCTACAGAG-T------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----CAAAACCCTTC-----T---CAGCAGG-GAGGCTAGCTTCTATCTGAGGGTAATGGAGGTTTCTGGCCAT
>Condylura_cristata
TAGGCAGCTGTCAGTTTCGGGTCTGTCAAAATAG---ACACTTTCCCTGCAGAGTT------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----TAAAACCACATAGGAGC---CAGCAGG-GAGGCTGGTTCCTATGCGAGGCTAATAGAAGTCTCTGGCTAT
>Erinaceus_europaeus
TAGG-------------CAGTTCTGTCAAAATTA---GTACTTTTCCTGCAAAC-T------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----CAAAACCAACT-----T---CA-CAAA-GAAGCCAGCTCCAGTGTCAGGTCAATCAAAGTCTCTGGCTCT
>Homo_sapiens
TAGGAAGCCATGGGTTTCAGTCCTGTCAAAACTGACAACACTTT-CCTGCTAGGTT------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----TAAAACTTATT-----T---CGGTAGG-GAGACTGGCTCCTATCTGAGAATAAAGGAAGTCTCTGGTCAT



Dog342_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
----TATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCA
CGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA----------------
---------------------------------------------------------------
>Canis_familiaris
GAGGGAAACAAAAGGTACCTTTTGTACACTTAC-TTTCATTTAATG-AAACATTTAGATA---AAGA---TATCATCGTT
A---------------ATCCTTTTACAGTGGGGAAATCATAATGAATCATTTCACAATGTATATGTATGTCAAATCACCA
CAATGTACACTTCAAATACCTTAAAATTTTATATGTCAAGTGTACCTCAATAAAGCTGAAATTTAAAAAAT---AAAATA
CCACAGTTA---CCTCTGCATCTTTGTTTTCTTTATTTTGTTCCCT-GATTGTAGACATTAGG
>Felis_catus
AAAGGAAACAAAGTG-CTCTTTTA-ACACTTAC-CTGCATGTT-TG-AACCATTTAGATT---AAAA---TATCACCATT
A---------------ATCCTTTCACAGTGGGGAAATCATAGTGAATGATTTCACAGTGGATATGTATATCACATCACCA
CAATGTACACTTTAAACATCTTACAGTTTTATGTGTCAATTATACTTCAATTAAGCTGAAATTAAA-AAAA---ATAATA
TACCAGTTA---TCTGTGTGTCTTTATTT-----ATTTTGTTCCCT-GATTACAGATAATAGG
>Manis_javanica
GAGGGAGACAAAGGCTCCCTTCTA-ACCCTTAC-C-----------------------------------TACCATAGTT
C---------------ATCC------------------------------TTCACAATGTGTATGGGTATGAGATCGCCA
TGATTTACTCTTT-ACTGTCTTACAGTTGTGTGTGTCAATTATACCTCTATAAAGCTGAAA-TAAAAAAAT---AAAATA
CCTTAGTTC---TCTGTGTGTGTGTATTTTCTTTATT---TCCCTA-GGTTGTAGATCATAGG
>Equus_caballus
GAAGGAAACAAAGGCTGCCTTCTG-ACACTTAC-CTTCCTTTAATA-AAACACCTAGATT---CAAA---TACCAAAGTT
A---------------ATCCTTTCACAATGGGGACATCATGG-GATTCCTTTCACAATGCA----TATATCAAATCACCA
TGATGTACACTTTAAATATCTTACGATTTTATATGTCAATTATACCTCAATAAGACTGAAATAAAACAAAT---AAAATT
TCAAAGTTT---TCTGTGTGTCTTTATTTTCTTTATTTCATTCCCTAGATTGTAGATCATAGT
>Ceratotherium_simum
GAAAGAAACAAAGGCTGCCTTCTA-ACACTTAC-CTTCATTTAATA-AAACACCTAGATT---AAAA---TACCAAAGTT
A---------------ATCCTTTCACAATGGGGAAATCATGGGGAATCCTTTCAAAATGTATACATATATCAAATCACCA
TGATGTACATCTTAAATATCTTACAATTTTGTATGTCAATTATACCTCGATAAAACCAAAATAAAA-AAAT---AAAATG
CCATAGTTA---TCTGT--GTCTTTATTTTCTTTATTTTGTTCCCTAGATTGTAGATCATAGG
>Myotis_myotis
GAGGGAAACAAAGGCTCCCTTCTA-GCACTTCA-CTTCATTTAGTA-AAACATCTCTGTG---AAAAGGTTACTATAGTT
A---------------CTCCTTTCACAATGGGGAAAGGATAGGGAACCCTTTCACAGTGTATACGTATATCAAATAATCA
TGATGTACACTTCATATATCTTA-AATTTTACATGTCAATTATACCTCAATGAAGCTGAAATAAAA-AACT---AAAATA
CCATAGTTA---CCTGT--GCCTTTATTTTCTTAATATTGTTCCCTGGCTTGTGGGACATAGA
>Rousettus_aegyptiacus
GAGGGAAA-----------------ACACTAACACTTCATTTAACA-AAACAGCTAGATT---AGAA---TACCACAGTT
A---------------ATCCTTTCACAATGGGGAAATCACAGGGAATCCTTTCACAATGTATATCTGTATCAAATCACCA
TGATGTACACTTTAAATATCTTACAATTTTATATATCAATTATACCTCAATAAAGCTGAATTAAAA--AAT---TAAATA
CCATAGTTA---TCTGTGTGTCTTTATTTTCTTAATATTGTTCCCTAGATTGTAGATTATAGG
>Sus_scrofa
GAGAGAAACAAAGGCTCCCTTCTA-ACACTTAG-CTTCACTTAATA-AAGCACCTCGATT---AAAA---TACCGTAGTT
A-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------TCTGTGGGTCTTTGTTTTCCTAATTTTGT-CCCGAGATTGGAGATCATAGA
>Tursiops_truncatus
GAGAGAAACAAAGCCTCCCTTCAA-ACACTTAG-CTTCACTTAATA-AAGCACCTCAATG---AAAA---TACAGTAGTT
A-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------TCTGTGTGTCTTTATTTTCTTAATTTTGT-CCCTAGATTGTAGATCACAGG
>Condylura_cristata
GGGGGAGTCAAAGGCC-CCTTCTA-ACCCTTCC-CTTCACTTAATA-AA-CACTGAAGTC---AGA----TGCCATAGGG
G-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------TCTGCACACCTGT------------TTCTTCCCTGGATCGTTGACTGGAGA
>Uropsilus_gracilis
GAGAGAGACAGAGGCT-CCTTCAA-ACCCTTAC-CTTCA-TTAATACAA-TACTGAGATT---AAAA---TACCAAAGAT
A-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------TCTGCATGCCTCAGTTCTCACTGTTCTCTTCCCTAGATCAGAGATCATAGG
>Homo_sapiens
GAGGGAAACGAAGACTCCCTTCTA-ACACTCGC-CTTCATTTAATA-GTACACCTAGATT---AAAA---TAGC--AGTT
T-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------TCTGTGTGTCTTTATTTTCTTTCTTTT-TCCCCTAGATTGTAGCTCGTAGG



Dog343_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
------------------------------------------------AATACTGTATTGTATACTTGAAATTTGCTAAG
AGAGTAGATCTTAAGTGTTCTCACCACACACAAAAAAATGGTAACT-ATGTGAGGTGATGGATATGTTAATTA---GCTT
GATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTG
TCAATTATACCTC---AATAAAGCTGGAAAAA------------------------------------------------
----------
>Canis_familiaris
TTGCAA----AGTTAA--------------------------------------GATC-TTATGAAGAA----CTTCTTA
AAATCAAATATT-TTAAAAGA---AA---TAATAAAAACTT-GCT---------GTGTTATATACTTCAAAGTTTCTAAG
A---TTAATCTTAAAT-TTTTCACCACAAAATG--AAACAATAATTAATGTGACATGATCGGGGTGTTGGCTAAATGCT-
-ATGGTGGGAATCACACTGTATTACATCAGTGTATGGAATCAACACATTGCACACTTTAGATTTAAACAA-TGTAGTATG
TCAGTTATATCTC---AATAATAAAAAAAAACTTACT---TAGTCAGTTTCCTCTTCTTTAAACCATTTTTACTCCTGAG
AATTAAAAAA
>Felis_catus
TTGCAA----AGTTAA--------------------------------------GATCATTATGAAGAC----CTTTTTT
AAATAAACTATTTTTAAAGAA---AGTAGTAAGAAAAACTTAAAC---------GTATTGTATATTTCAAAGTT--TTAT
GGATTGGATCTTAAATGTTTTCACCACAAAAGG-GAAACAATAATT-ATGTGACATGATGGAGATGTTGGCTAAATGCT-
-AT--------------------------------------AATACATCGCACAATTTACATTTACACAA-TGTTACATG
TCGGTTATATCTT---CATGATAAAGAACAACTTACT---TAGTCAGTTTCCTCTTCTTTAAACCATTTTTACTCCTGAG
AATTAAAAAA
>Manis_javanica
TTGCAA----AGTTAA--------------------------------------GATCATGATGAAGAA----TATTTTT
AAATGAAATATATGTAAGTGA---AATAGTTAGAAAAACTT-ACT-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------TAGTCAGTTTCCTCTTCTTTAAACCATTTTTACTCCTGAG
AATTTAAAAA
>Equus_caballus
TTGAAA----AGTTTA--------------------------------------GATTATTACGAAGAGCATTCATTTTT
ATATGAAATATTTGTAAATGA---AATAGTAAGAAAAACTT----------------------ACATCAAAGTTGCTAAG
AGACTAGATCTTAAGTGTTTTCACCACAAAAAGAAAAATGATAATT-ATGTGACATGGCGGAGGTGTTAGTAAA--GCT-
-ACAGTGGTAATCATATTGCAATATATTGA-GTATCAAATCAACACATTGTACACCTTACACTTCCACAA-CCTTATATG
TCAATTATATCTC---AATAAT-AAAAAAAACTTACT---TAGTCAGTTTCCTCTTCTTTAAACCATTTTTACTCCTGAG
AATTAAAAAA
>Ceratotherium_simum
TTAGAACAAAAGAT----------------------------------------GAAAATTTAGAAGAA------TTTTT
ATGTGAAATATTTTTAAATGA---AATAGTAAGAAAAACTT-ACT---------GTATTATATATGTCACAGTTGCTAAG
AGACTAGATCTTATGTGTTTTCACCACAAAAAG-AAAATGATAATT-ATGTGACATGATGGAGGTGTTACCTAAA-GCT-
-ACAGTGGTAATCATATTTCAATATATAAACATATCACATCAACACATTGTACACCTTAC---------A-CAATGTATG
TCAATTATATCTC---AATAAT-AAAAAAAACTTACT---TAGTCAGTTTCCTCTTCTTTAAACCATTTTTACTCCTGAG
AATTAAAAAA
>Myotis_myotis
TTGTAA----TGGTAA--------------------------------------CATCATTATGAAGAA----CATTTTT
AAAGAAAATATTTTAAAATGA---AATAGTAAGAAAAACTT-ACT---------GTATTACATACTTAAAAATTGCTAAG
AGACTAGACTTTAAGTGTGCTCACCACAAAAAG-AAAATGATAATT-ATGTTACA-GATGGAGATGCTATCTAAT-GCT-
-AGAGTGGTAATCATATTGCAATATGTAAATCTGTCAAGTCAATACATTATACACCTTAAACATGCACAA-TGTTAAATA
TCAATTATATATC---AATAAC--GAAAACACTTACT---TAGTCAGTTTTCTCTTCTTTAAACCATTTTTACTCCTGAG
AATTAAAAAA
>Rousettus_aegyptiacus
TTGGAA----AGTTAA--------------------------------------AATAACTATGAAGAA----CATTTTT
AAATGAAATATTTTTTAATTA---AATAG---GAAAATATTTACT---------GGATTACGTACTTCAGAGTTGCTAAG
AGACTAGATCTTAAAGGTACTCACCACAAAAAG-AAAATGATTATT-ATGTGACATGATGGAGACGTTAGCTAA--GCT-
-ATAGTGATAATCATA---CAATACATAAATATATCAAGTCAATACATTGCATACCTTAAAGTTATACAA-TATTAAATA
TCAATTATATCTC---AATAATAATAAAAAACTTACT---TAGTCAATTTTCTCTTCTTTAAACCATTTTTACTCCTGAG
AATTAAAAAA
>Sus_scrofa
TTGAAA----AGT-----------------------------------------GATCATCATGAAGCA----TATT---
-------------TTAAATGA---AACAGGAAGAAAAACTT-ACT-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------TTGTCAGTTTCCTCTTCTTTAAACCATTTTTACTCCTGAG
AATTTAAAAA
>Bos_taurus
TTGGAA----AGTGAA--------------------------------------GATCATTATGAAGAA----TATTT--
-------------TTAAATGA---AATAGTAAGAAAAACTT-ACT-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------TAGTCAGTTTCCTCTTCTTTAAGCCATTTTTACTCCTGAG
AATTAAAAAA
>Condylura_cristata
TTAAAA----AGATCAAGATGATGACCACAACAAGAATATAATGAACACAATATGATTATTATGAAGAA----CATTTTG
AAGTGAAATATTTTCAAATGA---AATTGTAAGAAAAACTT-ACT-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------TAGTCAGTTTCCTCTTCTTTAAACCATTTTTACTCCTGAG
AATTAAAAAA
>Sorex_araneus
TTGGAA-------TAA--------------------------------------TATCATTATTGAAAA----CATTTTA
AT-----------TTAAATGA---AATAGCGAGGAAAACTT-ACT-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------TAGTCAGTTTCCTCTTCTTTAAACCATTTTTACTCCTGAG
AATTAAGAAG
>Homo_sapiens
TTGGAA----CGTTAA--------------------------------------GATTATTATAACAAA----CATCCTT
-------------TTAAATGA---CATAGTAAGAAAAACTT-ACT-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------TTGTCAGTTTCCTCTTCTTTAAACCATTTTTACTCCTGAT
AATTAAAAAA



Dog345_LINE

>L1_CARN7_3END
----------------------------------------------------------------------------ATGG
TGACAGATGGTAACTAGACTTATTGTGGTGATCACTTCACAATGTATACAAATGTCGAATCACTATGTTGTACACCTGAA
ACTAATATAACATTGTATGTCAATTATACTCAAATAAAAAAA--------------------------------------
-----------------------------------------------
>Canis_familiaris
TTATTCCA-TTTTATTATTCGTGCATTAATCCATCCA----TGGCTAACTACCAG----AAAAAGGTCAGATA-------
---TGGGTGCTAACTGGATTTATTGTGATGATCATGGTGCTGTACACACAAATATGGAATCATTATGTTGTACACCTGAA
ACTAATATAATGT--TATGTCAGTTATACCCCGACTT-------AAAC---ATAAAAGGT----TA---AAGTTTTA---
-----GGAGTATGTAGAAGAGAGTTAAGTCAGGTGTAGCTGAGAAGA
>Lynx_canadensis
TTATTCCACTTTTTTTATTCAGGCGTTAATTCATCCA----TGGCTGAGTACCGT---AAGAAAAGTCAGATA-------
---CGGATGCTAACTGGATTTACTGTGGTGATCGTTTCACAATACATACAAATATTGAATCATGATGCTGTACGCCTGAA
ACTAATATAATGT--TATGTCAGTTATACCTCAACTT--------------AAAA--GGTCAAGT---------------
-----GGGGCACATGGGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNN
>Manis_pentadactyla
TTACTCAA-TTCTATTATTCACGCATTAATTCATCCA----TGGCTAAACACCCT---CAGAAAGGTCAGATG-------
---TGGAGGTTGACTGGACTTCCTGTGGTGATCATTTTGCAGTATACTCCAATAACAAATCATTGCATTGTACACCTGAA
ACTTATATAACCT--TATGTCAGTTATACCTCAATTTTTT-----------AAAA--AGTTAGGTA---AAATTTCG---
-----TAAGTATCTAGAAGGGA--TGACTCTCTACTAGCTGAGAAGG
>Equus_caballus
TTATTTGA-TTCCTTTATTCATGCATGAATTTACCCA----TGGCTA------------AGGAAGGTCAGATC-------
---TGTATGTTAACTGGACATTCTGTGGTGATCGTTTTGCAATATATACAAATGTTGAATCACCACACTGTACACCTGAA
ACTAATATAATGT--TATGTCAGTTATACCTCAATTT--------AAG---AAACACGGTCAGATA---AAGTTTCA---
-----GGAGTGTCTAGAAGGGAGATGAATCACTTCTAACTGAGAACA
>Ceratotherium_simum
TTATTCGA-TTCTATTATTCATGCATGAATTTATCCG----TGGCTA------------AGAAAGGTCAGATA-------
---TGGATGTTAACTGGACAGTCTGTGGTGATCATTTTGCAATATATACAAACATTGAATCACTACATTGTACACCTGAA
ACTAATATAGTGT--TATGTCAGTTATACCTCAATTT--------TAA---AAACAAGGTCAGATA---AAGTTTCA---
-----GGAGTATCTAGAAGGGAGATAGATCACTTCTAGCTGAGAAGA
>Myotis_myotis
TTATTTGA-TTCCATTATTCATGCATCAATTCAGCCA----TGGCTCAGTACCAT---TAAAAGAGGCAGAAA-------
---TGCGTGTTAATTGGATTTATTGTGGTGATCATTTTGCAATATATGTGAATAGCAAATCATCATGTTGTACACTTGAA
ACTAATATAATGT--TATGTCAATTATACCTCATTTTTTTTTAAAAAA---AAATAAGGTCAAATG---AAACTTGA---
-----CGAGCACCTAGAAGGGAGATAAGTCACTTCTAA--GCATAGA
>Rousettus_aegyptiacus
TTACTGTA-TTTCATTATTCATGTATTAATCTATCCATGGCTGGCTAAGTACCAT---AAGGAAGGCCAGAAA-------
--ATGGATGTTAATTGGACTTACTGTGGTAATCATTTTACAATATATACAAATACCAAATCATTATATTGTATACCTGAA
ACTAATATAATGT--TATATTAACTATACCTCAATTA------AAAGG---AAAAAAGGTCAAATA---AAGTTTCATGA
GTACCTGAGTACCTAGAAGGGAGATAAGTCACTCCTATCTGAGCAGA
>Sus_scrofa
TTAGTTTA-TTCTATTTTTCAGGCATTAATTCATCCA----TGGCTAAATACCAT-------------------------
--------------------------------------------------------------------------------
---------------------------------------------------AGGAAAAATTAGATA---AAGTTTCA---
-----TGAATACCTAGAAGGGATTTAAGTCCCTTCTAGCTGAATGGA
>Bos_taurus
TTATTTGA-TTCTGTTTTGCATGCATTAATTCATCCA----TGATTAAATATCAC-------------------------
--------------------------------------------------------------------------------
---------------------------------------------------AGGAA-TGTCAGATA---AAGTTTCA---
-----CAAGTACCTAGAAGGGATTTANNNNNNNNNNNNNNNNNNNNN
>Condylura_cristata
GTATCTAA-------TATTCATGCATTAATTCATCCT----TGGCTAAGTACCAT-------------------------
--------------------------------------------------------------------------------
---------------------------------------------------AAAAAAGGTCAGAAA---ACTTTTCA---
-----TGAGTACCTAGAAGGAAG--AGGGCATACCCAGCTGAGAGGA
>Solenodon_paradoxus
TGATCTGA-TTCTATTATTCATGACTTAATTCATCCA----TGACTAAGAACCAC-------------------------
--------------------------------------------------------------------------------
---------------------------------------------------AAGAAA----AGAAA---AAATTTCA---
------GAGTATCTACCAGTGG--TATATCATTTCTAGCTGAGAGAA
>Homo_sapiens
TTATTTGA-CTCTATTATTCGTATAATAATTCATTCA----TGGTTAAGTACCAT-------------------------
--------------------------------------------------------------------------------
---------------------------------------------------AAGAATGGCCAGGTA---AAGTTTCA---
-----TGAGTACCTGGAAGGTA--TAAGTCA-TTCTAGCTAAAAGAA



Dog347_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------TTTTTCCAGCTTTATTGA
GGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATATACGTATACATTGTGAAATGA
TTACCACAATCAAGCTAATTAACATATCCATCACCTCA-CATAGTTACCA--TTTTTTTGTGTGTGGTGAGAACACTT--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AAGATCTACTCTCTTAGCAAATTTCAAGTATACAATACAGTATTATTAACTATAGTCACCA
TGCTG-TACATTAGATCTCC------------------------------------------------------------
-------------
>Canis_familiaris
ATCAAGCATTGGGAGAAAAACTATTACTAATAGCAACTTTGTTTTTTTTTTTCTAAAGATTTTATTTATTTTTTCATGAG
AGATACAGACTAAGAGAGAGAGGCAGAGACACAGGTGGAGGGAGAAGTGGCTCCTCTCAGGGAGCCCAATGCGGAACTCG
GTTCTGGATCGCGGGATCATGACCCAGCCAAAGGCAGGTGCCTAACCACTGAGCCACCCAGGCATCCCACAACTTTGGTT
TT-----GAAAGAAA---TATCC----TTTCT-------TTTTCTTTTTTTAGGATTGA---TTTTT-----TTAATTGC
TGTGTAACTGACATATAACAC---TATTAGTTTCAAGTGTACAACATAATGATTTGATATTTGTACATACTGCAAAATGG
TCACCACGATAAATCTAATTAAT--GCCTATCACCATT-CATAGTT------TGTTTTTCTTGTTGATGAGAACTTTTAA
GACCTATTCTTTGGGATCCCTGGGTGGCTCAGTGGTTGAGGGTGTGCCTTTGGCTCAGGTTGTGATACCGGAGTCCTGGG
ATCAAGTCCCACATCGGGCTCCCCACAGGGAGCCTGCTTCTCCTTCTGCCTATGTCTCTGCCTCTTTCTGTGTGTCTCTC
ATGAATAAATAAATTTAAAAAGACCTACTCTTTTAGCAACTTTCAAATATATGATACACTATTATTAACTGTAGTCA--A
TGCTG------------------TACCC----TTTCT---AACAGTAT-TTAACCATTCAGAGTCC--ACAATTTATTAG
GGATATTCCAAAT
>Ailuropoda_melanoleuca
ATCAGATGTTGGGAG-AAAACTACTAATAATAA-----------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------CTTTGGTT
TT-----GAAAGAAA---TATCC----TTTCT-------TTTTCTTTT---AGAGTTGA---TTTTT----TAAAATTGC
GGTATAATTGAC-TATAACAT-TATATTAGTTTCAGGTGTACAACATAATGATTTGATATTCAGATATACTGCCAACTGG
TCACCACAATAAATCTGGTTAAC--ATCCATCACCATT-CATAGTTAAC---TTTTTTTCCTTGTGATGAGAACTTTT--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AAGACCTACTCTCCTAGCAACTTTCAAATATGTGATACAATATGATTAACTACAGTCA--A
TGCTG------------------TACCC----TTTCT---GACAGTAT-TTAACCAGTCAAGGTCA--ACAACTTATTAA
GGATATTCTGAAT
>Manis_javanica
ATTAAATATTGGGAG-AAA---ACTACCAATA------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------ATAACTTTAGTT
TC-----CAAAGAGT---TACCC----TTTCT-------T----TCCTTTTAGAGTTGAATTTTTTT-----TGAATTGA
GGTATGATTGACATATAAC------ATTAACTTCAGGTGTACAACATAAT-------TATTTGTATCTATT---------
---TCACAATGAGTCTAGT-------ACTGTCATCACTACACAGTTACATATTTTTTTCCCTTGTGATGATAACTTTT--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AAGATAAACTCTCTTAGCAACTTTCAAATAGGCAATATAGTATTCTTAACTATAGTTGCCA
TGCTG-TACATG-----------TATCCTTTCTTTCT---AACAGTGT-TTAGCCAGTGAGGGTCA--ACAACTTATTAA
GGGTGTTCTGAGT
>Equus_caballus
GTTAAATGTTGAGAG-AAAACTACAAATAATAATAA--------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------CTTTAGCT
TT-----GAATAGAT----------------------------------------TTGGA--TTTTT-----TTATTTGA
GGTATAGTTGACACATAACA----TATTAGTTTCAGGTGCACAACATCATAATTTGATATTTGTATATATTTTGAAATGG
TCACCACAATAAGTCT-GTTGAC--ATCTGTCACTATA-CATAGTTGCAAA-TTTTTTTTCTTGTGATAAGAACTTTT--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AAGATCTATTCTCCTGGCAACTTTCAAAAATTCAGCAGAGTATTATTAAC-ATAG----CA
TGCTA-TACACG-----------TATCCTTTCTTTCC---AACAGTAT-TTGACCATTCAGGGTCA--ACAACTTATTAA
GGATATTCTGAGT
>Ceratotherium_simum
ATTAAATCTTGGGAG-AAAACTATCAATAATAATAA--------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------CTTGAGTT
TT-----GAAAGAAT---TACCT----TTTCT--------TTTTTTCTTTTAGAGTTGGA--TTTTT-----TTATTTGA
GGTATAATTG--ACATGACA----TTTTAGTTTCAGGTGTACAACATACTAATTTGATATTTGTATGTATTTTGAAATGG
TCACCACAATAAGTCTAGTTAAC--ATCCATCACCATA-CATAGTTACAAATTTTTTTTTCTTATGATGAGAACTTTT--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AAGATCTACTCTCTTAGCAACTTTCAAATATGCCATACAATATTATTAACCACTGTCACCA
TGCTA-TACATG-----------TATCCTTTCTTTCT---AATAGTAT-TTAACCGTTCAGGGTCA--ACAAC---TTAA
GGATATTCTGAGT
>Myotis_myotis
AGTAAATGTTAAGAA-AAAACAACCAATAATAATAACTCT----------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------CCTTCTGCT
TT-----GAAAGAAT---TAGCC----TTTCT--------CTT--TTTTTTAGAGTTGAA--TTTT------TTAATTGA
GGTATAATCGACCTATCACA------TTAGTTTCAGGTATACAACATAATGGTTTGCTACTTGTATATACTGTGAAATGG
TCATCACAGTAAGTCTAGTTAAC--ATCTGTCAGCATA-CATAGTTAAAAA---TTATTTATTGTGATGAGAACTTCT--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AAAATAGACTCTCTTAGCAGCTTTCAAATATGCAACCCAGTATTATTAACTATAGTCACCA
GGCTGTTACATG-----------TACCC----TTTCT---AACAATAT-TTAACCATTCAGGGTCA--AAACC----TAA
GGACATTCTGAGT
>Rhinolophus_ferrumequinum
ATCCAATGTTAGAAG-AAAACTACCAAAAATAGTAA--------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------CTTTGGTT
TTGATTTGAAAGAAT---TACCC----TTTCT---TTCTTCTTTTTTTTTTAGAGTTGAA--AAATT-----TTAATTGA
GGTATAATTGACATATAACA------TTAGTTTCAGGTATACAACAT-----------ATTTGTATATATT--------G
TCACCACAATAAGTCTAGTTAAC--ATCTGTCACCATA-C--AGTTACAA---TTTTTTTCTTGTGATGAGAACTTTT--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AAAATCTACTCT--TAGCAACTTTCAAATATGCAACACACTATAATTAACTAT--TCGCTA
TGCTGTTACATG-----------TATCC----TTTCT---AACAGTAT-TTAACCA-TCAGGGTCA--ACAATTTATTAA
GGATATT--GAGT
>Sus_scrofa
ATTCGATGTTGGGAG-AAAACTACCAATTACTA-----------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------CTTTGGAT
T------GAAAGAAT---TACCC----TTACT------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------AACAGTTTTTAAATCATTAAGAATCA--ACAACTTATTAA
GGACATTCTGAAT
>Tursiops_truncatus
ATTAAATGTTGGGAG-AAAACTACCAATAATAA-----------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------CTTTGGTT
TT-----GAAAGAAT---TACCC----TTTCT------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------AGCAGTAT-TTAACCACTATCGGTCA--ACAACTTGTTAA
AGACATTCTGAGT
>Condylura_cristata
AATAAATGT---GAC-AAAACTGCTCACAATAGCAA--------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------CTTTGCTT
CT-----GAAAGAAT---TACC--------CT------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------AACAGTAT-TAAACTGTTTGGGGTCA--ACGATTTATGAA
GGATATTCTGAAT
>Solenodon_paradoxus
ATTAAATTT---TGG-GGGAAAAATTAC--CAATAA--------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------CTTTGATT
GT-----AAAAGAAT---TACT--------CT------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------AACAGTAT-TAAATATTTATGGGCAATGACATATTATTAA
GAAAATTCTGAGT
>Galeopterus_variegatus
ATTAAATGTTG-GAG-AAAATTACCAATTATAATAA--------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------CTTTGGTT
TC-----AAAAGAAT---TACCCTTTCTTTCT------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------AACAGTAA-TTAACCA-TCAGGGTCA--ACAACTTATTAA
GAATATTATGCGT



Dog350_LINE

>L1_CARN7_3END
-------------------------------------------------------------------------------G
TGGTGATCACTTCACAATGTATACAAA-TGTCGAATCACTATGTTGTACACCTGAAAC-TAATATAACAT--TGTATGTC
AATTATACT--------------------------------------------CAAATAAAAAAA---------------
--------------------------------------------------------------------------------
---------?
>Canis_familiaris
TTTTGCAAATGGCTAA-AAGCGAGGAGGGAAAAAAGACAT---ACCATTTTAAG---ATATAC--------ACACA----
----------------------------TATCAAATCATTATGTTGTATACCTGAATC-TA-------------TATGTC
ATTTACACTTCA---------------ATTAAAAACAAGGTAACCTCACCAGGCAAACAAAAAC----------------
-AGATATACATGTGTAAAA----TTCATTTTATATATTTGTATCAACAATAATAACTA--TAGTATTGGT----------
-----GGGGA
>Felis_catus
TTTTGCAAATGGCTAA-AAGTGGGG--GGGGAAAAGACATTACACCATTTTAAG---ATGCAC----ACACACAAA----
----------------------------CAGCAAATCATTATTTTGTATAACTGAAAC-TC-------------TATGTC
AATTATACCTCG--------------------GAAAAAAGTATTGTTACCAGGCAAACAC--------------------
-AAATATATATGAATAAAA----TTCATTGTATATATCTATATCAATAATAACAATAG--TATTGGTGGT----------
-----AGTGA
>Manis_pentadactyla
TTTTGCAAATGGCTAA-AAGTGGGGGAGGGGGGAAGACATTACACCATTTTAAG---ATATACATATATATATCTA----
------ATATATACATACATACACAAA-CATTGAATCATTATGTTGTACACGTGAAAC-TAATAAAATGCTGTATATGTC
AATTATACCTCA---------------ATTTAAAAAAATGCATTCTGATGGGGCTAACAAAAAAAGATAT----------
-ATACACACATACATATAAT---TTCATTTTACACATCTATATCAGC-ATGACAATAA--TAGTGCTACT----------
-----GGAGG
>Sus_scrofa
TTTTGCAAATGGCTAA-AAGTGGGGA-GAAAAAAAGACATTACACCATTTTAAG---ATATATATATACACACACA----
---------------------CACAGAGTATCAAAACATTATGTTATACACCTTAAACTTAATACAATGT--TACATATC
AATCACACTTCA----------ATATCTTTT------AAGTATCCTCTCCAAGCAAACAAACAA----------------
-AAATACACACACAT--------TTCATTTTGTACATCTGTATCAACAACAACAATGG--TAGAACTGATGGTAGT----
-----GGCAG
>Bos_taurus
TTTTGCAAATGGCTAA-AAGTGGGG--GGGGAAAAGACATTGTATCATT--------ATATACATACACATAAG------
----------------------------TATTCAATC--TATATTGTACACCTGAAAC-TAATACAATGT--TAAATGTC
AATTACACTTCA---------------GTTTAAAAGAAAAAATCCTCTCAAGGCAAAGAAACAAAATC------------
-AGATACATACATTTACAA----TTCATTTTGTATATCTATATCAACAATACTAGTAG--TAATATTGGCAGTGGT----
-----GGTGA
>Equus_caballus
TTTTGCAAATAGCTAA-AAGTGGGGT-GAAAAAAAGATATTACACCATTTTAAG---ATACACATATACACACAAA----
----------------------------TATCAAATCATTATGTTGTATACCTAAAAC-TAATATAATGT--TACATGTC
AATTGTACCTCA--------------ATTTTTTTAAAAAGTATTCTCTTGAGACAAACAA--------------------
-AGATATATATATATAAAA----TTCACTTTATACATCTATATCAACAACAACAATAA--TAACAGTAGTAGTAGTACTG
GTAGTGGTGG
>Ceratotherium_simum
TTTTGCAAATGGCTAA-AAGTGGGG--TGAAAAAAGACATTATACCATTTTAAG---ATACATATATATATATATA----
---------TATATACACACACACACA-TATCAAATCATTATGTTGTATACCTGAAAC-TAAGATAATGT--TATATGTT
GATTATTCCTCA--------------ATTTTTAAAAAACGTATTCTCTTGAGGCAA------------------------
-AGATATAGATTAAAAAAA----TTCACTTTATACATCTATATCAACAACAACAACAA--TAATAGTAGTAGTATTGGT-
-----GGTGG
>Myotis_myotis
TTTTGCAAATGGCTAA-AAGTGGGGGTGGGGAGAAGACATTACATCATTTCAAA---ATATATAAATACATACCCA----
---------------CACATACACACA-CATCAAATCATTAT-CTGTACACCTAAAAC-TAATCAAATGT--TGTATGTC
AATTATACTTCAAAATATTTTCTTAATTTTTCAAATAAAGTATCCTTCTGAGGCAAACAAAGAT----------------
-ATATATATATATATAAAA----TTCATTTTATGCATCTATA--AACAATAACAGTAA--TAACAGCAGACTT-------
-----GGTGG
>Rousettus_aegyptiacus
TTTTGCAAATGGCTAA-AAGTGGG---AGAAAAAGGATATTACACCATTTCAAG---GTACATGTATATGCACACA----
-----------------------CAAA-TATTAAATC---ATACTGTATATCTAAAAT-TA--------------ATGTC
AATTATACTTCA------------ATTTTTTTAAAAAAAGTATCCTCTTGAGGCAGAGAATGATGTATATATATACAT--
-ATATACATATATATATAA----TTCATTTTATACATCCATATCAACAATA-TAATAA--GAGAACT-------------
-----GGTGA
>Condylura_cristata
TTTTGCAAATGGCTAATAAGGGAGGAGGAGGGAAAGATATTCCACCATTTAAAC--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-ACACACACATATATGCATC---ATCATTATATACAACTGTAATGACAACAACAACAAAGTAGTATTGGT----------
-----GGTAG
>Erinaceus_europaeus
TTTTGCAGATGGCTA--TATTG-----GGTGGGAAGACATTAAATCACATTAAG--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-AGATAT----ACACAAAAG---TTCATTTTATACATCGACAATAACAA----AGAAG--TAGAATTCAG----------
-----GGTAT
>Homo_sapiens
TTTTACAAATAGCTAA-ATGTGGG---AGAGAAACAGTATAATAATATTT-AAG--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-ATATTA----ATATAAAAA---TTAATTTTATACATCTATATCAACAACAATAACAG--TAGCAGTAGG----------
-----GACAG



Dog352_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TAAGGTGTACAACGTGATGTTTTGATATACGTATACATTGTGAAATGATT
ACCACAA-TCAAGCTAATTAACATATCCATCACCTCACATAGT-TACCATTTTTTTGTGTGTGGTGAGAACACTTAAGAT
CTACTCTCTTAGCAAATTTCAA----------------------------------------------------------
---------------------------
>Canis_familiaris
TTGCACATGAGAAAAGTAAGGCTTAGAGAGTTTAA--GTCACTAATTTTAGC---AGTATAACTTGTGGTCTT---TTT-
TTCCTCTAGTTTTATTGAGAAATAATTGACATGT-ATCACTGTATAAGTT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TAAGGTATACAGTATGATGGCTTGATTTAC--ATGAATTGTGAAATGACT
ACCACAA-TAGGCTTAGCTAAT--ATCCATCACCTCTTATAGA---TAAT-AAAAAGAAAGGGAAAA-------AAATGT
CCCTTTGTGATACA-----------TACATAGCTTGTCTTCTT---AAACAACATGC-----TGTAACAATGTGGGATTT
TCCT------CAATGTAAGAGTTCCTT
>Ailuropoda_melanoleuca
TTGCAAATGAGGAATGTAAGCCTTGGAGGGTTTAAGTGTCACTACTTTTAAC---AGTATAACCTGTGGTCTT---TTTT
CCTCCCCAGTTTTACCGAGAAATAATTGACATAT-ATCGCTGTATAAGTTTAAAGTGTACATGGGGCGCCTGGGTGGGTC
AGTCATTAGGCGTCTGCCTTCGGCTCAGGGCGTGATCCCGGCATTATGGGATCGAGCCCCACATCAGGCTCCTCCGCTGG
GAGCCTGCTTCCTCCTCTCCCACTCCCCCTGCTGTGTTCCCTCTCTCGCTGGCTGTCTCTCTCTGTCAAATAAATAAATA
AAATCTTTATTTAAAAAATATATAAATAAATAAAGTGTACAGCATGATGGTTTGATTTAC--ATGAGTTGTGAAATGACT
CCCACAA-TAGGTTTAGCTAAC--ATCCATCATCGAATATAGATTTTAAA-AAAAAGAAAAGAAAAAAC-----AAATGT
CCCTTTGTGA---------------TGCGTAGCTTGTCTTCTG---AAACAACGTAT-----TACAGCAATGTGGGATTT
TCTT------CAGTGTGAGAATTCCTT
>Manis_pentadactyla
TTTCACATGAGGAAAATAAGACTTGGAGAGCCTAA--GTCTGTACTTTTAAC---TACATATCTTGTGGGATA---T---
TTTACTCAGGTTTATTGAAAAATAATTGAC-----ATCACTGTACAAGTC------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TGA---CTTCAGCCTGATGGTTTGATTTAT--ACATATTGTGAAATGAAT
AGCACAATTAGATTTAGTTAAC--ATCCATTATCTCATATAGA-TACAAT-AAAAATAAAAGGAAAA-------AATATT
CTCTTTGTGA---------------TGCATAACTTGTGTTCTT---AAGCAACACGC-----TGTAACCATGTGGTATTT
TCCT------CAGTGTGAGTGTTGCTT
>Sus_scrofa
TTGCACGTGAAGAAAGAAAGTCTTAGGAAGCTTAA--GTCATTGCTTTTAAC---TGGCTAAGTTGTGTTCTT---T---
TTTTCCCAATTTTATTGAGAAATAATTGACGT---ATTATTATACAATTT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TAA---------------GGTTTGATTTAC--ATATGTTAGGAAATGATT
ACCGTAA-TAGATTTAGTTAAG--TTTCATC---TCATTTAGA-CCCAAT-AAAA--------GAAA-------AAAATT
CTATTTGTGA---------------CGTCTAACTTGAGTTCTT---AAAC----TGC-----TATAACAATTTCAGTT--
------------------GAGTTCCCT
>Tursiops_truncatus
TTATACATGAGGAAAGTAAGTCTTAGAGAACTTAA--GTCATTACTTTTAAC---TCTGTAACTTGGATTCTT-------
TTTTCTCAGTTTTATTGAGAAATAACTGACATAT-ATCTTTATGTAAGTT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TAAGGTGTACATCATGATAGTTTGATTTAC--ATATATTGTGAAATGATC
ACCATAA-TAGGTTTAGTTAGC--CTTTAT----TCATTTAAA-CACAAT-AAAA--------GAAA-------AAAATT
CTCCTTGTGA---------------TGCCTAACTTGTGTTCTT---AAACAACTTGC-----TATAACAATGTGGGATTT
TTTTTCAATGCATTATATGAGTTCCTT
>Equus_caballus
TTGCACATGAGGAAAGCAGGTCTTGGAGAGCTTAA--GTCATTACTTTGAAC---AGCATAACTTGTATTCTT---TTAC
TTGTTCCAGTTTTATTGAGAAATAACTGTCATAC-ATCACTGTATAAGTT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TAAGGGGTACAGCGTGATGGTTTGATTTAC--ATATATTGTAAAATGATT
ACCACAA-TAGGTTTAGTTAAC--ATCCATCATGGCATATAGA-TGCAAC-AAAAAGAAGAGAAAAA--------CGATT
CTCCTTGTGG---------------TGCATAATTTGTGTTCTT---AAACAACATGC-----TATAACAATGTGGGATTT
TCCT--------GTGTGACAGTTTCTT
>Tapirus_indicus
TGTCACATGAAGAAAGTAAGTCTTGGAGAGCTTAA--GTCATCACATTTAAC---TGCATAACTTGCA-TCTT---TT--
TTTTTTCAGTTTTATTGAGAAATAATTGACATAC-ATCGCCATATAAGTT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TAAGGTGTACAGCATGATGGTTTGATTTAC--ATATATTGTGAAATGATT
ACCACGA-TAGGTTTTGTTAAC--ATCCATCATCTCATATAGA-TACAAT-AAAAAGACAAGAAAAG-------AAATTT
CTCCTTGTGA---------------TGCGTAACTTGTCTTCTT---CAACAACGTGC-----TGTAACAATGTGGGATTT
TCCT------CAATGTGAGAGTTCCTT
>Myotis_myotis
TTGCACATGAGGGAAGTAGGTCTTAGAGATCTTAA--GTCCTTACTTTTAAC---TGCATAACTT-TGTTCTT---T---
TTTTTTGAGTTTTATTGGGAAATAATTGACATAC-ATCACTGTATAAGCT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TAAGATGTATAACATGATAATTTGATTTAC--ATATATTGTGGAATGATT
ACCACAA-TAGGTTTAGTTAAC--ATTCACCATCTCTTACAGC-TACAAGAAAAAAGAAAAAACAAA-------------
TCCCTTCTGA---------------TGCATAACTTGTGTTCTT---AAATAACATGCTGTAATATAACAATGTGTGATTT
GCCT------CAATGTGAAGGTTTCCT
>Rousettus_aegyptiacus
TTGCACAAGAGGAGAGTAAATCTTGAAGAGTTTAA--GTCATTATTGTTACG---TGCCCAAATTGCATTCTT-------
------------TATTGAGAAATAATTGACACAC-ATCATTATATAAGTT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TAAGGTGCACAAAATAATGATTTGATTTAT--ATATATTGTGAAATGATT
ACCACAA-TAAGTTTAGTTAAC--ACCTATCATTTCATATAGA-TAAAGT-GAAAAG------AAAA-------AATTTT
TTCCTTGTGT---------------TGCATAACTTGTATTCTT---AAATAACATGC-----TGTAACAATGTGGGATTT
TCCT------CAATGTGAAAGTTCCCT
>Condylura_cristata
TGGGGCATGAGGGAAGTAAGTCTTGTAGAACTTAA--ATCTTTACTTTTAAC----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------TGCATGACTTTTTTTCTT---AT----CATGC-----TATAACAATGTGGAATTT
TCCT------CAGTGTGAGAGTACCTT
>Sorex_araneus
TC-CACATGAGGAAACTAAGTATTGGAGAGTATCA--ATCAGGTCTTTGAAC----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------AC--TAACCTGTGTTCTT---AAA---CATGC-----TATATCAAGGTAGGATGT
TCAT------TAATATGAGAACTCCTT
>Homo_sapiens
TTGCACATGAGAAAAGTAAGTCTTGGAGAAGTTAA--GTCATTACTTTTAAC----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------TTTGTAACTTGTATTTCT---AAACAG-ATGC-----TAAAACAATGGAACACTT
TCAT------CAATGTGAGAGTGTCTT



Dog353_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------CCAGGGGCTGGGGGG--TGGGGGAAATGGGGAGATG----TTGGTCAAAGGGTACA-AAGTTTCAGTTATG-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-CAGGATGAAT-----------------------AAGTT-CTGGAGATC-TAAT----------------GTACAGCATG
GTGACTATAGTTAATAATACTGTATTGTA---------TACTTGAAATTTGCTAAGAGAGTAGAT-CTTAAGTGTTCTCA
CCACACACAAAAAAA----------------TGGTAACT-ATGTGAGG-TGATGGATATGTTAAT---TAGCTTGATTGT
G-GTAATCATTTC---ACAATGTATACGTATATCAAAACATCACGTTGTAC----ACC----TTAAATAT--ATACAATT
TTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------
>Canis_familiaris
ATAGAAAC--TTTGAATAATGAAAAAGAT--TACAAATTTGAAGTGATGATAAA--------CTCCTAG-GA---TAGCT
TTAAT----------CTGATTATAATAAATTCTCTGGAGGAAGG-----TAATCAAAAGGTATA-AAGGTT---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----ATTAAGT-----------------------AAGTA-CTAGAAATG-GGAT----------------G-ACAGAATG
ATGATTGTAGTTAACACA--------------------TATGGGAAAGTTGTT--GAGAATACCT-TCTAAGAATTTTGG
TCAC---AAGGGGAAAATTTTTTTTCTTTTTTTGTATCT-TTATGAAA-TGATGG--ATGTTAC----TAAATCTATT--
--ATAATCATTTC---ACAATATAT--GTAAAT--------CATGCTGTAC----ACT----------GT--ATATAG-T
TGTGCATATCAATTATTTCTCAATAAAACT----------AGAAAAAAATTCTCTGGTGTCAGACC-CCAGCATTCTCAG
GAAACAACAAATTGATTTTATTTATTTACTTTTATTTATTTATGAGAGAGAGAAAGGGACAGTCACATAGGCAGAGGGAG
AAGCAGGCTCCCAGTCCTGCCTAACGCAGGACTTGATCCCAGGACTGCAGGATCACGTCCTGAGCCAAAGGCAGACGCTC
AACTACTGAACCACCCAGGTGCCCCCAAACTGATTTTAATTATATT
>Felis_catus
ATAAAAAC--TTTGAATTGTGAAAAAGAC--TACAAATTTGAAGTGACGAGAAAACACAGAACTGATAGTAA---GAACT
TTAAT----------TTGATTATAATAAATTCTCTGGAGAAATG-----TGGTCAAAAGGTAAA-AGGCTC---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-TAAGATAAAT-----------------------AAATG-CTAGGGATG-TAGT----------------GTACATTATG
ATGACTGTAGTTAACACTACTATGCGATA---------TATGGCAAGGTTGTT--GAGAGTACAT-TCTAAGAATTTTCA
TCAC---AAGGAGAAAATTTTTTTCTCTTCATTGTATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNN----------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------NNNNNNNNNNNNNNNNNNNNNNNN
>Manis_javanica
ATAAAAAC--TTTGAATAGTGAAAAATACAGTACAGATTTGAG-----GATAAA--ACAGAACTCATGGTAATAATAACT
TT-AT----------TTGGTT---ATAAGTTCTCCAGAAGAAGG-----TGGTCAAAAGGTAAA-AACTTCAGTT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----A-TAATT-----------------------AAATA-CTAGGGATGTAAAT----------------GTGCACCATG
ATGAC--TAATTAACATCGCTGTATGGTA---------TATGGAAAA----TT--GAGTGTATAT-CCTAAGAGCTCTCA
TCAC---AAGG---AAGTTTTTTCTTTTTATCTGT------------A-TAATGG--ACATTAAC---TAAACCTGTT--
--TTCATCATTTC---ACAACATAT--ATAAGTCAAACCATCATGCTGTACCTTAACC----------TT--ATACAA-T
GATGTATGTCAGTTA--TCTTAATAGAACT-TGA------AAAAACAAATTATCTGGTATTGTGTC-CTGACAGTCTCAG
AAAA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------CTGCAAACTGATTTTAAATATATT
>Sus_scrofa
ATTAAAAC--TTTGAAAAATGA--AAGGCTATGCAGATTTGAACTGAGGATAAA--ACCTAACTC--AGTAA---TA-TT
TTAAT----------CTGATTATAATAAATTCTTTGGAGGAAGG-----TGGTCAAAAGGTATATAAACTTGTAAAGTT-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-TAAGGTAAAT-----------------------AAGTA-TGAGGGATG-TAAT----------------GTACAACATG
A-GACTACAGTTAACACTGCTGCATGATA---------AAAAGGAAAATTTTTAAGAAAGTAGGT-CCTTAG--TTCTCA
TCAC--AAGGAGGAA-----TTTTTTTTTAATTGTACCT-GTATGAGA-TGATGG--ATGTTAAC---TAAACCTGTT--
--GTAATCATTTC---ACAATGTGT--ATAAAT-----CATCATGATGTTC----ACC----TTAAACTT--ATAAAG-T
GACTGTTGTCAATTATTTCTCAGTAAAATTAGGG------AAA---AAATTCTCTGGAACTAGACC-CAGAAATTTTCAG
TAAA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------TTGCAAATGGATTTTAAATGTATT
>Tursiops_truncatus
ATAAAAAA----TGAAAAATGA--AAGACTATGCAGATTTGGAC--AGGATAAAACACAGAATTCATAGTAA---TA-TT
TTAAT----------CTAATTATAATAAATTCTCTGGAGGAAGG-----TGGTCAAAAGGTATATAAACTTTTTTTAAAA
TTATTTTTGGCTGCGTTGGGTCTTCGTTGCTGTGCACGGGCTTTCTCTAGTTGCAGCGAGAGGGGGCTACTCTTCGTTGC
AGTACATGGGCTTGTCATTGCGGTGGCTTGTCTTTGTCGTGGAGCACGGGCTCTAGGCATGTGGGCTTCAGTAGTTGCAG
CGCATGGGCTCAGTAGTTGTGGCTCGCAGGCTCTAGAGCGCAGGCTCAGTAGTTGTGGTGCACGGGCTTAGTTGCTGCTC
CGTGGCATGTGGGATCTTCCAGGACCAGCGCTCAAACCCATGTCCCCTGCACTGGCAGGTAGATTCCCAACCACTGCCCC
ACAAGGTAAGTCCCAAAAGGTATATAAACTTTTAAAGTA-CTAGGGATA-TAAT----------------GTACAACATG
ATGACTATAGTTAACACTGATGTGTGATA---------AAAAGGAAAATTTTTAATATAGTAGATCCCTTAGAGT--TCG
TCACAAAAGGAGGAAGTTTTTTTTCTTTTAATTGTATCT-ATATGAGA-TGATGC--ATGTTAAC---TAAACCTATTGT
G-CTAATCATTTC---ACAGTGTAT--GTAAATCAGACCATCATGCTGTGC----ACC----TTACATTT--ATATAA-C
AATGTATGTCAATTATTTCCCAATAAAACTGG--------GGGAAAAAAGTATCTGGAACTAAACC-CAAACATTTTCAG
GAAA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------TGGCAAACTGATTTTAAATATATT
>Equus_caballus
ATAAAAAC--TTTGAAAAGTGAAAAAGACTATACAGATTTGAAGTGATGATAAA--ACAGAATTCATAGTAA---TAACT
TTAAT----------CTGATTGTAATAAATTCTCTGAAGGAAGG-----TGATCAAAAGGTATA-AACTTCTGGCTA---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-TAAGATAAGT-----------------------ACT------GGGGTG-TAAT----------------GTATAGCATG
ATGACTACAGTTAACACTACTGTGTGATA---------TATAAGAAAGTTGTTAAGAGTGTAGAT-GCTAAGAGTTCTCA
TCAC-----AAGGAAAATTTTTTTCTTTTCATTGTATCT-ATATGAGATTGATGG--ATGTTAACT-ATAAACCTATTGT
G-GTAATCATTTC---ACAGTACAT--GCAAATCAAACCATCATGCTGTAC----ACC----TTAAACTT--ATATAG-T
GAT-GATGTCAGTTATTTCTCAATAAAACTGGAAA-----AAAAATAAACTCTCTGGTGTTAGACC-CTGACATTCTCAG
GAAA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------CTGCAAACTGATTTTAAATATATT
>Ceratotherium_simum
ATAAAAAC--TTTGAAAAGTGAAGAAGACTATACAGATTTGAAG---TAATAAA--ACAGAATTCATAGTAA---TAACT
TTAAT----------CTG--TATAATAAATTCTCTGGAGGAAGG-----TGGTCAGAAGGTATA-AACTTCCAGTTA---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-TAAGATAAAT-----------------------AAGTA-CGAGGGATG-TAATGTACAGCATCTAGTCCGTACAGCATG
ATGACTACAGTTAATACAGCAGTGTTAAC---------TGTAG-AAAATTACTAAGGGAGTAGAT-CCTAACAGTTCTCA
TCAG-----AAGGAAAA----TTTCTTTTTATTGTATCT-ATATGAGAGTGATGG--ATGTTAAC---TAAATTTATTGT
G-GTAATCATTTC---ACAGTATAT--GTAAATCAAACCATCATGCTATAT----ATC----TTAAACTT--ATACAG-T
GAT-TATGTCAATTATTTCTC---AAAACTGGAAA-----AAAAATAAACTCACTAGTGTTGGACC-CTGACATTCTCAG
GAAA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------CTGCAAACTGATTTTAAATATATT
>Myotis_myotis
ATAGAAAC--TTTGAATAGTGAAAAACACTATACAGAGTTGAACTGATGATGAAACACAGAACTCATAGTAA---TAATT
TTAAT----------TTGACTATAACAAATTCTCTGGAGGAAGGTGATTTGGTCTAAAGGTATA-AACTTCCAGTTA---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-TAAGATAAAT-----------------------AAGCA-CTAGAGATG-TAAT----------------GTACAGCCTT
ATGTCTATACTTAACACTGCTGTATGATA---------TTTAGAAAAGTT-----GAGAGTAAAT-CCTAAGAGGTGTCA
TTAC-----AAGGAGAAAATTTTTTTCTTTACTGTACTTAATATGAGA-TGATGG--GTGTTAACTAATAAACCTATTGT
G-GTAATCATTTC---ACAGTTTTT--GTAAATCAAATCATCATGCTGTAC----CTC----TAAAACTTTGATACAG-A
GGTGTATGTTAATTATTTTTCAATAAAAC-----------AAAAAAGCATTCTCTGATGTTAGATC-CTGACATTCCCAG
GAAA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------CTGCAAACTG---------ATATT
>Rousettus_aegyptiacus
ATAAAAAC--TTTGAATTGTGAAAAACA---TACAGATTTAAACTGATGATAAA--ACAGAACTCATAGTAA---TAACT
TTAAT----------CTGATTATGATAAAGTCTCTGGAGAACGGTGGTCTGGTCTAAAGGTATA-AATTTCCAGTTA---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-TAAGATAAAT-----------------------AAGTAGTTAGGGATG-TAAT----------------ATACAACATA
AT---TATAGTTAATGCTGCTGTATGATAACACTGCTTTATGATAAAGTT---AAGAGAGTAGGT-ACTAAGAGTTTTCA
TCAC------AGGAGA-------CTTTTTTCTTGTATTT-ATATGAGA-TGATGG--GTGTTAAC---TGAAATTATTGT
GTTTAAGCATTTTATGACAATATAT--ATAAATCAAACCCTCATGTTGTAC----ATACATGTGAAACTT--ATACA---
AATATATGTCAATTATTTCTTAGTAAAACTGG--------AAAAAAAAATTCTCTGATGTTAGACC-CTGACATTCTCAG
GAAA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------TTACAGACTG---------GTAAT
>Condylura_cristata
ATAAAACG--TTTAAAT----------ACTACACAGATTTGAAGCCATAGTAAAACACAGAAGTCACAGTTA---TA-CT
TTGAT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------AACAGTAAATTCTCTGATATTAGACT-AAGACATTCTTAG
GTAA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------CTGCAAATTAATTTTAATTATATT
>Uropsilus_gracilis
ATAAAATT--TTTAAATAGTGAAAAAGACTATACACATTTGAAATGATGATAAA--ACACAACTCATAGTGA---TAACG
TTGAT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------AATTGTACTTTCTCTGATATTACACT-AGGACATTTTCAG
GAAA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------CTGCAAACTAATTTTAATTATATT
>Galeopterus_variegatus
ATAAAAACTATTTGAATAGTGGAAAGGACTATACATGTTTGAAGTAAAGATAAA----ACAACTCATAATGAC-CTGAAT
GTGAT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------TATAGTAAAT----TGGTGTTAGTCTTTGCTTTTTCTCAT
GAAA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------CTG--GTCTGATTTTAAATATATT



Dog357_LINE

>L1_CARN7_3END
--------------------------------------------------------------------------------
--------------GAGGGGGGTTGGGGATGGGTGAAATG----------------------------------------
--------------------------------------------------------------------------------
----------------------------GGTGAAGGGGGTCAAGAGGTACAAACTTCCAGTTATAA---AATAAATAAGT
CATGGGGATGTAATGTACAGCATGGNGAATATAGTCAATAATATTGTANTAACNTTGTATG-GTGACAGATGGT-AACTA
GACTTATTGTGGTGATCACTTCACAATG-TATACAAA---TGTCGAATCACT-ATGTTGTACACCTGAAACTAATATAA-
----CATTGTATGTCAATTATACTCAAATA--AAAAAA------------------------------------------
--------------------------------------------------------------------
>Canis_familiaris
CCTGCAAATGGTGA---AGAACAAG-A--GAAGGAAGAAGGAATCATCTACCTCTC---AGGAAACACTGTC-AGAAAAG
GGGAACCAGA-------------------CCTTTGAAAGT----------------------------------------
--------------------------------------------------------------------------------
----------------------------TGCTTAGAGAGT--AAATCCTTAAAGTTCTCATTGCTA---GGAAAAAAAAT
AATAAATT--------------------------------------CTGTGA---TGTGTG-GTGATGGATGTT-AGTTA
GACTTACT---CTGCTCATCATTTAATT-TCTACAAA---TACTGAATCATT-AAGCCGGATACCTAAAACTAAGGTAAC
TGTTTGTTATATGGCAATTACAGCTAAGTA--CAAAAT-----T---GAGAGGGTTAAAAAAGG----------------
GGGGGGGGGGCAA---GGAGAAGAGAGAAAGAAAGGGCAGGGCAGCCCT--GAGAGAGATAAAGACAC
>Felis_catus
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNN----------CTCTTCTCTCTCTCAAAAA----------------------------------------
--------------------------------------------------------------------------------
-------------------------------TAATAAATA--AAACATTAAAAATGTTTAA--------GAAAAAAAATT
----------------------------------------------CTGTAATTATGTGCGGGGGGTGGATATT-AACTA
GACGCACC---GTGGTCATCACGTAATA-TATACAGA---TACCGAATCATT-GCGTCATACACCTGACACTAAGGTAA-
----GGTTGTGTGTCAATCCTACCTCTATA--AAAAAT-----T---GAGAGGGTAAAA---------------------
---GAAAAAACAG---GGAGAAGAGAGAAAGAAAGAGCAGGGCAGCCCCAAGAGAGAGACAAAGACGC
>Manis_pentadactyla
TCTCCAAGTTGCTGAGAAGAACAAA-T--AAGGGAGAAAGA----ATCTACTTCTC---AAGAAGCACGGTCGAAAAAGT
GGGTAGAAGAA-------------TTGTATATTCCAAAGG----------------------------------------
--------------------------------------------------------------------------------
----------------------------TGTTTACAGAGT--AAATCTGAAAATTTCTCACCACA----CACAAAAAAGT
----------------------------------------------CTGTAACTATATATG-GTGATGGATGTT-AACTG
GACTTACT---ATGATCATTTTGAAATGTTATACAAA---TACCGAATCGTT-ATGCTGTACATCTGAAACTAT------
-------------ACAATTATATCTTAATA--AAAAAA---TTA---AAGAGGCTTAAAAAAAAAACACATGGGGCC---
GAGGGAGAAAGGA---AAGGAAAAGAGATAGAA--AGCAGGGAAGCCCC--AGCAGAAACAAAGCCTC
>Sus_scrofa
TCTACAAATTGTGGGTTAGAACAAA-T--AAAGCAGCAG--------------------AGGAAGAGCTGTC--------
-----------------------------TCTTTGAAAGT----------------------------------------
--------------------------------------------------------------------------------
----------------------------GGCTAGGAAAGC--AAGTCTTAACAGTGCTCCTCACAAGGGGAAAAAAAAAT
----------------------------------------------GTGTCACTCTTCGGT-GTGAAAAATGTTAAACTA
GATTTTTT---GTGATCATTTCATAACG-TATACAAA---TAGTGAAGCTATTATGTCA-ATAGCTGAAGCTAA------
---------TATGTCAATTACAGCTCAGTACCAAAAAAAAGAAG---AAGAGGGTTAAAAAAAAAAAAAA----------
AAAAGGTGGGGGT---GGGGAAGAGAGAAAGAAAGAGCAG-----------GACAGAAACAAAGCCAT
>Bos_taurus
CCTGCGAAGTGTGGGTTAAAACAAA-C--AAATGAGAAAGA----ATCTATTTCTC---AGGAAGCACCATC-ACAGAAG
GGGAGGAAGGA-------------T----TAGTTGAAAGA----------------------------------------
--------------------------------------------------------------------------------
----------------------------GGCTAAGAGAGT--AAATTTCAACAGTGCTGAACACAA---G------AAAT
----------------------------------------------GTGTCATTATGCGTG-GTGATGGATGTT-GACTA
GATTTATT---GTGGTCATTTCGTAACA-GACACAAA---TATTGAATCGTT-ATGTTGTACACCTGAAGCTGG------
---------TATGTCAACTACATCCCAACA--AATAAA--AATC---AAGAAGGTAAAAAAAAAAAAAAAAAAAAAGGGT
GGGGTGGGAAGCA---CAGGAAGTGAGAAGGAAAATGCAGG----------GACAGAAACAAAGCCAT
>Equus_caballus
TCTATAAATTGTTGAGAAGAACAAA-T--AAGGGAGAAAGA----ATTTACTTCTC---AAGAAGCACTGTC-AGAAACA
GGAAGGAAATA-------------TTATATATTTGAAAGT----------------------------------------
--------------------------------------------------------------------------------
----------------------------TTCTAGGAGT----AAACCTTAAAAGTTCTCACCACAA---GAAAAAAAATT
-----------------------------------------------TGTAGCTGTGTATG-GTGATGGATATT-AATTA
GACTTAGT---GTGACCATTTCATGATA-TATACAAA---TATCGAATCATT-ATGTTGTACACTTGAAACTAATATAA-
----TGTTATATGTCAA--ATATCTCAATA--AAAAATTGTTTT---AAGGGGG--------------------------
GAGGGAGGAAGCA---AAGAAAGAGAGAAAGAGTGAGCAGGGCAGCGCC-GGACAGAAACAAAGACAC
>Tapirus_indicus
CCTGTAAATTGTTGAGAAGAACAAA-T--AAGGGAGAAAGA----ATCTAATTCTC---AAGAAGCACTGTC-AAAAATG
GGAAGGAAGGA-------------TTGTATATTTGTAAAT----------------------------------------
--------------------------------------------------------------------------------
----------------------------TGCTAGGAGT----AAATCTTAAAAGTTCTCATCACAA---GAAAAAAAATT
-----------------------------------------------TGTAACTATGTATA-GTGATGGATATC-AACTA
GACTTATT---GCAATCATTTCAAAATA-TATACAAA---TATTGAATCATT-ATGTTGTCTACCTGAAACGAATACAA-
----TGTTATATGTCAAGTATA--TCAATA---AAAATTCTTTT---AA-------------------------------
-----------------AGAAAGAGAGAAAGAAAGAGCAGTGCAGCCCC-AGACAGAAACAAAGACAC
>Myotis_myotis
CCTGCAAACTGTTA---AGAACAAA-T--AAGACAGAAAGG----ATCTACTTCTT---AAGAAGCACTGTC-AAAAATG
GGAA-GAAGCA-------------TTATGTATTTGAAAGTACAGTGGGGCCTTGACTTATGAGTGACCCAGCTAACGAGT
TTTTTGAGATACCAGCTGCATTGAGTTGACAGAGTAATTTGGGTTAACGAGCTCCTTAACGAGCTCGGTCTCGGAACGAA
TTAAACTGGTAAGTCAAGGCCCCACTGTAGATAAGAGAGC--AAATCTTAAAAGTCCTCATCACAA---G-AAAAAAGTT
----------------------------------------------TTGTAACTGTATGGG-ATGATGTATGTT-AACTA
GACTTATTATGGTGATCATTTAGCAATA-TACACAAAGATCATCAGATCATT-ATGCTGTACACCTGAAACTAA------
-------AATATGTCAATTATACCTCAATA--AAAAAA---AAT---AAGAGTGGTAAA---------------------
ATGGGGGTGTGGG---GAGGAAGAGAGAAAGAAAGAGCAGGGTAGCCCT-GGAGAGAAACAAAGACAC
>Rousettus_aegyptiacus
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNN-------------NNNNNNNNNNNNNNNN----------------------------------------
--------------------------------------------------------------------------------
----------------------------NNNNNNNNNNNNNNNNNNNNNNNNNGTCCTCATCACAA---GAAAAAAAAAA
----------------------------------------------TTGTAACTGTGTGTG-------------------
-----------GTGATCATTTCTCAATA-CATGGAAA-------GAGTGATTCATGTTGCATACCTGAAACTAATATAA-
----TGTTCTATTTCAATTGTGCCTCAATG--AAAAGA---ATT---AAGAGGGTTTAAAAAAGGGGGTTG---------
GGGGAGAAGAGAA---AAGGAAGAGAGAAAGAA--AGCAGGGCAGCCCC-AGACAGAAACAAAGACAC
>Condylura_cristata
TTTGCAAGTTGTTGAGAAGAAAAAA-C--AAAGGAGAATGA----ACCTACCTCTC---AAGAAACAAGGTC-CAAAAAA
GGGAGAGGAAG---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------GAAGAGGG-------AAAGAGCAAAGCAACCAA--GATAGAAACAAAGACAT
>Sorex_araneus
GTTGC-CATCGTGGGGAAGAAGAGACAAGAGAAAGAGCCG-----ATTTTTCCCAC---CAGATGCACTGTC-CGACACC
AGGGAGACGGA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------AAGGAGAG---ACAGAGAGAGCAG--CAGCCCC--AAGAGAAACAAAGACAC
>Homo_sapiens
TTTGCAAATTGTTAAGAAGAAAAAA-ATGAAAGGGAAAGGA----ATGCAAGCATC---AAGAAGCACTGTC-AAAAAGG
GGGAGGAAGGA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------AAGGAAGGAAGGGAAAAAGAGTAGAGCAGCCTT-GGATAGAAACAAAGCCAT



Dog358_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--TGTATACTTGAAATTTGCTAAGAGAG----TAGATCTTAAGTG---TTCTCACCACACACAAAAAAA---TGGTAACT
ATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTG
TA-CACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA--------------------
----------------------------------------------------------
>Canis_familiaris
AA-AAAC---AGTGAAATAATTTTCA-CAATTAATTTACATGAAGTACAGG---ATGT---AAAACGAAACAC-----A-
--------TTTGAAAGTTGCTAAGAGAA----TA-ATCTTAAAAG---TTCTCATTACGAGAAACAATT-TTTCATAACT
TTGCAC-GTGCTGG--ATGTTAACTAGACGTATCATGGAAATCATTGTGTAATATGTACAAAT--CAGATCACGACATTG
GA-CACCTGAAGCCAGCACAA-TGTTATATGTCAATTATGCCTCAAT-----------AAAATAAAAT---AAAACCAAA
GGC-A---GAATAAAGAAGGTTAAAATCTGTCTTATTTATGTTGGTTTGAGCTTCATT
>Felis_catus
AA-AAAC-----TGAAATAATTTTCATTGACTAACCTGTGTAAAGTACAGG---ATAT---AAAACCAAAGAC-----A-
--------TTTGAAAGTTGCTAACAGAA----TAAATCTTCACAT---TTCTCATTATAAGGAAAAA-----TTTTGACT
ATGTACGGTGACGG--ATGTTATCTAGACTTATCATGGTGACCATTTTGTAGTATGTACGAACGTCAGATCACGACATTG
TA-TCCCTGAAACTAATACAA-TGTTATATGTCATTTACACCTCAAT--------TAAAAAATAAAAT---AAACCCAAA
GAC-A---GGGTAAAGGAGGTTAAAATGTGTCTTGTTTGTATTGGTTTGAACTTCATC
>Manis_pentadactyla
AA--AGC---CATGAAGTGATTTTCATTGAATAGTCTATGAAAAGTATAGG---ATAT---AAAACTGAAGAC-----A-
--------TTTGAAAGTTGCTAAGAG------TAGATCTTAAAAG---TTCTGATCACAAGAAGAAAAA---TTGTAACA
GTGT--GGTGAGCC--GTGTTACCTAGACTTACTGT-ATGATCATTTTGTAATATATACACATGTTGAATTATGACAATG
TA-TACCTGAA-----TACAA-TGCTATATGCCACTTATACCTCAAT--AAAAGAAATAAAATAAAAT---AGAACCAGA
GAC-A---GAATAAAAGAGGTTACAAGGGG--CTGCTTACTTTGGTTTGGGCTTCATC
>Sus_scrofa
AA-AAAC---AGTGAAATAATTTTCATTGAAGCGTTTATGTAAAGTATGGG---AGAG---AAACCCAAAATTTGCTAA-
--------GTTGTAAGTTGCTAAGAGAG----CAAATCTTAGACGTTCTTCTCATCACGAGAAAAACAA-TCTTGTCACC
GTGTATGGTGACAG--ATGTTAACTACACTCCTTGTCGTGATTATCTTGCAATACATACAACTATCAGATCATCCTGTTG
TA-CACCTGAAACTAATACCA-TGTAATATCTTAATTATACCTCAAT------------TTACAAAAT---AAAATCAAA
GAC-C---GAGTAAAGGAAGATAAAATGTGTCACGCTTACATTGGTTTGGGCTTCATC
>Bos_taurus
AA-AACC---AGTGAGATAAGTTTCATCGAATAGTTTATGTAAAATAT--------AC---AAAACCAAAGAC-----A-
--------CTTGAAAATTGCTAAGAGAGCAAATAAATCTTAAAAG---TTCTCATCACAAGAAAAAAAAGTCTTGTAACT
ATGTATGGTGACAG--ATGTTAACTAGACTTACTGCAGTGATCATTTTATAATATATACAAATATCAAATCATCACATTG
TACCCCCTGAAACTAGTATCA-TGTAACATGTCAATTAATCCTAAATAAAGAATAAATTAAATTAAAT---AAATTCAAA
GACAA---GAGTCAAGGAGGTT-TAACGTGTCTTGTTTACATCAGTTTGGGCTTCACC
>Equus_caballus
AA-AAAC---AGTGAAATAATTTTCATTGAATAGTCTGTGGAAAGAATAGG---ATAT---AAAACTAAAGAC-----A-
--------TTTGAAAGTTGCTAAGAAAG----TAAATCTTAAAAG---TTCTCAACACAGGAAAAGCAT---TTGTAACT
ATGTATAGTAATAG--ATGTTAACTGAACTTATTGTGGTGACCATTTTGTAATATATACACATATCGAATCATTACTTTG
TA-CACCTGAAATTACTACAG-TGTTATGTATCAATTAGACCTCAAT-------AAATAAAATAAAAT---AAAACCAAA
GAC-A---GAGTAACGGAGGTTAAAAC--GTTTTGCTTACATTCGTTTGGGCTTTCTC
>Tapirus_indicus
AA-AAAC---AGTGAAATAATTTTCATTGAATAATCTATGGAAGGAACAGA---ATAT---AAAACCAAAGAC-----A-
--------TTTGAAGGTTGCTAAGAAAG----TAAGTCTTAAAAG---TTCTCATCATAAGAAAAAAAA-TTTTGTAACT
ATGTACAGTGACAG--ATATTAACTAGACTTATTGTGGTGACCATTTTGTAATATACACACATATCAAATCATCACACTG
TA-CACCTGAAACTAATACAA-TGTTATATGTCAATTATACCTCAAT--AAATAAAATAAAATTAAAT---AAAAATAAA
GAC-A---GAGTAAAGGAGATTAAAACATGTTTTGTTTACATTGGTTTGGGCTTCCTC
>Myotis_myotis
AA-TAAT---GGTGAAATAATTTTCAATGGATAGACTATGTCAAGTACAGG---ATAG---AAAATGAAAGAC-----A-
--------TTGGAAAGTT---AAGACAG----TAAATCTTAAAAG---TTCTCATTACAAGAGAAAAAAATTTTGTAACT
ATGTATGGTGACGA--ATGTTAACTGCACTTATTAT---GATCATTTTGTAATATATACAAATACTGAATCATTATGTTG
TA-CACCTGATATGAATACAA-TGTTATATATCAATTATACCTCAAT------TAAAAATAATAAAAT---AAAATAAAG
AAAGA---GAGTAAAGGAGGTTAAAACATGTCTTGTTTACATTAGTTTGGGCTTCACC
>Rousettus_aegyptiacus
AA-TAAT---GGTGAAATAATTTTCATTGAACAGTCTATGTAAAGTACAGG---ATAT---AAAACCAAAAAC-----A-
--------TTAGAAAGTTGCTAAGAG------TAAATCT--AAAG---TTCTCAT---AAGAGAAGAAAATTTTGCAAGT
ATATATGGTGAAGG--ATGTTAACTAGTCTTATTGT---GAAAATTTTGTAGTATATACAAATACTGAATCATTATGCTG
TA-CACCTGAAACTAATACGA-TGTTATATATCAATTATATCTCAAT-----TATAAAAAAGTAAAAC---AAAATCAAA
GAT-A-----ATAAAGGAGGTTAAAACATATCTTGTTTACATTAGGTGGAGCTTCATC
>Condylura_cristata
AAACAGC---AATGACATAATTTTCATTGAGGAGTCTATGCAAAGAACAGGAGGATAT---AAACCTAAAGAC-----A-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------GAGTAA-AGAAGTTAAAACAT---TGGTTTACATTGGTTTGGTCTTCATC
>Sorex_araneus
AAAAAGC---AGTAAAATAATTTTC-----------TGTGCAAA-TATAGG---ATAT---AAAATCCAAGCC-----C-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------AAATCAATGATACTAAAATA---CTTGTTTACATTGTTCTAAGTTTCATC
>Cavia_porcellus
AA-AATCCTTAGTGAAATAATTTTCATTGAGCA-TTTATATAAAGTCCAGG---GTAG---AAAACCAAAGAC-----A-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------GAAGAAAGGAGACTAAAATACACTCTGCTTACATTGGTTTAGGCTTTATA



Dog359_LINE

>L1MA9_3END
-------------------------------------------------------------------------ATATCTG
CACTCCCATGTTCATTGCAGCATTATTCACAATAGCCAAGATATGGAANCAACCTAAGTGT--------CCATCGACGGA
TGAATGGATAAAGAAAATGTG-----------------------------------------------------------
--GTATATATACACA-ATG-GAATATTATTCAGCCTTAAAAAAGAA-GGAAATCCTGCCATTTGTGACAACATGGA---T
GAACC----TGGAGGACATTATGCTAAGTGAAATAAGCCAGGC---ACAGAAAGACAAATACTG-CATGATCTCACTTAT
ATGTGGAATCTA-AAAAAGTCAAACTCATAGAAGCAGAGAGTAGAATGGTGGTTGCCAGGGGCTGGGGGGTG--------
-GGGGAAATGGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGTAC
AGC--------ATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAG---------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TAGAT
CTTAAG--------------------------------------------------------------------------
-----------TG-----TTCTCACCACACACAAAAAAA---TGGTAACTATGTGAGGT-GATGGATATGTTAATTAGCT
TGATTGTGGTAAT-CATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATT
TGTCAATTATACCTCAATAAAGCTGGAAAAA-------------------------------------------------
------------------------------------
>Canis_familiaris
AGTTATTCTAGGCATTTCAAGCAGAGAGAATTCAACATAAGGAATAAATTTTA---AAAAACATATTGGA----------
-TGTTGGATGTTCATTGCAGCATTATTCACAAAAGCCATTGCATGGAAACAACTT--GTGT--------CCATTCATAGA
TGAATGGACAAAGAAAATGTGACACATATGCATATATATATATATTATGTAGGTATATACAAATGTAAATATGTGTGTAT
ACACACACATATGCA-ATA-GAATATTATTCAGCTGTAAAAAAGAG-GCAAATCCTGTCATTTGCAATAACATGGA---T
GGGACC---TTGAAAATGTTATATTGAAGGAAATAAGTCAAAC---AGATAAAGACAAATATGGTTATGATCTCACTTAT
CCATGGAATCTA-AATAAACCAAAATCATAGATACAGAGGACAGATTGGTGGTTGCCAGAGGCTGGGGG-TGTGTGGGGG
CAGGTTAAATGCATGAAGGTGGTCAAAAGGTACAAACTTCCAATAAT--AAGGCAAATAATTTCTGGGGGTATAATGTAC
AGA--------ATAGTGACTATAGTTAGTGATACTCTATCGTATATTTGCAAAATGCCAAGAGAA---------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TAAAT
CTTAAA--------------------------------------------------------------------------
-----------AG-----TTCCCATCACAAGAAAA-ACACGTTTACAACTATGTGAGGT-GATTG--TCGTTAACTGAAC
TCACTGAGAGGAT-CAATTCACGGTATATACCTATATCAA---ATTCTGTTGTGCATTTTGGACTAATACAA-TGTTCCC
TGTGAATTATATCTCACTAAAACTGGAGG--------------GAAA-TAT-ATTGGG---AGGATCAAAATAGCAAAAG
AGAAAA-GCAAGTG-TTATTTATGA-TTGGAAACTG
>Felis_catus
AGTTACTCTAGGCATTTCAAGCAGAGAGAATTCAACACAGGAAATAAG--TTA---AAAGACATATTGGA----------
--------TGTTCATTGCAACATTATTTACAGAAGCCAATGCAT-GAAACAACCTAAGTGT--------CCATTCATAGA
TGAATTGACAAAGAAAATGTGATATGCCTGTAT-------TC---TATATGTGTGCACATATGTGTATATGTGTGTATAC
ATAGACACATACACA-ATG-AAATATTATTCAGCTGTGTAAAAGAA-GGAAATCCTGTCATTTGTAACAACATGGA---T
GGGTC----TTGAAGGCATTTTACTGAAGGACATAAGGCAAAC---AGAAAAAGACAAAAGAGGTTATGATCTCACTTGT
ATGTGGAATCTG-AATAAACCAAAATCATAGATATAGAAGACAGATTGGTGATAGCCAGAGGTGGGGGA-AGAGAAGG--
-AAGTAAAATGGGTGAAGGTGGTCAAAAGGTACAGACTTCCAGTTAT--AAGATAAATAAGTCCTGGGGATGTAACGTAC
ATCCCCTGTCAGTGGGGATACAATACAGTGATGCTGTATTGTATATTTACAAAATGCCAAGAGAG---------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------CAAAT
CTTAAA--------------------------------------------------------------------------
-----------AG-----TTCTCATCAGAAGAAAACAAACTTTTGTAACTATGCAAGGT-GATTG--TTGTTAACTAAAC
TTATTGTGATGAT-CATTTCATGATATATGCATAT--------ATTATATTGCGCATTTTAGACTAATACAG-TGTTCCC
TGTTAATTATTTGTCACTAAAACTGGGGGA-------------AATA-TAT-ATTGGG---AGGATCAAAAGAGCAAAAG
AGAAAA-GCAAGTGGTTATTCAAAA-TTGGGGACTG
>Manis_pentadactyla
ACTTGTTCTAGGCATTTCAAGAAGAGACGATTGAACATGGGAAAGAAG---TA---AAAAGCATATTGGG----------
--------TGTACATTGCAGCATTATTTATAACAGTCAAGACATGGAAACAATTTAAATGT--------CTGTCAGTGGG
TGAATGGATAAAGAGAAGGTGATATATATATATATATACGTA---TGTGTGTGTATACATACATACATATATATATGTAT
GTATACACACACATA-ATG-AAATGTTATTCAGTCATATAGAA----GGAAATCCTGCCATTTGCAACAACACAGA---T
GGGGC----TTGAGAACACTATGCTAAATAAAATGAGTCAAAA---AGTAAAAGACAAATATTG-TATGACCTCACTTAT
AGGTGGAATCAG-AACAAATCAAAATAATAAATACAGAGGACAGATTGGCATCTGCCAGAGGTGGGGGG-AGGATGGT--
-GGGCAAAATGGGAGAAGGTGGTCAAAAGGTACAAATTTCCAGTTGT--AAG----ATAAATCCTGGGGATTTAGTGTGT
AAC--------ATGTTGACTGTAATTAGCAATGCTATATTGTGTATTTGCACATAGCTAAGAGAG---------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TAGAT
CTTAAA--------------------------------------------------------------------------
-----------AG-----TTCTCATCATAAAACAA-A----TTTGTAACTATGTGATGTGGATGG--ATGCTAACTAAAT
TTATTGTGAT----CATTTCCCAATATACAC--ATATCAA---ATCATGTTGTACACTTTGGACTAATAAAA--------
TATCAATTATATCTCAGTAAGACTGGGAAAAAGAGAAAA----AATATTAT-GTTGGA---AGGATCAAAAT--------
--------CAAGTGGTTTCTCCAAA-TTGGGAGTTT
>Sus_scrofa
AATTATTCCAGGTCTTTCAAGCAGAGAGAATCCAACACAGGAAATAAG--CTA---AAAACTATGTTGGA----------
--------TTCTCATTGCAGTATTATTTACAATAGCCAGGATATGGAACCAACCCA-GTGT--------TCATCAATGGA
CAAATGGATCAAGAAGATGTGAGATAT-----------------------------------------------------
ACATATATGTATAAA-ATGAGAATATTATTTAGCCATAAAAGAA---GGAAATCCTGCCATTTA-AAAAACATGGA---T
GGATTT---TTGAGGGCATTATGCTGAATGAAATAAGTCAAAC---AGAAAAAGCCAAATGCTG-TATGATCTTATTTGT
ATGTTGAATCTGAAAAAAACTAAAATCATAGATACAGAGAATAGAA-AATGCTCACCAGAGGTGTGGGTGGGGGT-----
-GGGCAAAATGGGTGAAAGTGGTCCAAA-------ACTTTCAGTTAT--TAGATAAATTAGTAATAGGGATGTGATGT-C
AGC----------------------------------ATTGCAAAATTGCAAATTGCTGAGCGGGGATAGCTTAGTTTTT
TTTTCTTTCTTTTTTTTCTAGGTCCACTCCTGCAGCATATGGAGGTTCCCAGGCTAGGGGTCTAATTGGAGCTGTAGCCA
CTGGCCTACGCCAGAGCCACAGCAACTTGGGATCTGAGCCACGTTTGTGACCTACACCACAGCTCACGGCAACGCCAGAT
CCTTAACCTACTGAGAAAGGCCAGGGATTGAACCTGGAGCCTCATAGTTCCTAGTCAGATTCATTAACCATTGAGCCACG
ATGGGAACTCCAGCTTAGTTCTTATAATAAGAAAAAAA---TGTGTAAGTATGTGATGT-GACGG--CTG-CAACTAAAC
CTATTTTGATGAA-CATTTTGCTATGTATGTGTATATCAA---ATCATATTTTACTCATTGGAATATTACAA-TGTAATA
GGTTAATTATATCTCAATAAAAAATGGGAAAAAGGAAAA----AAAA-AAT-ATGGGA---AGGATCAAAATAGCAACAG
AGGAAA-ACCACAGGTTACTCAAAA-TGGAGAGCAG
>Bos_taurus
AATTATGCTAGGCCTTTCAAGCAGAAAGAATCCAACATGGGAAATAAA---CT---AAAAACATATTGAA----------
--------TTCTCACCGTAGTATCATTTACAACAGTCAAGGTATGGGAACAATCCT-GTGTT-------TCATTAATGGA
TGAATGCATGAAGAAGATGTAAAACATACACAC-----------------------------------------ACACAC
ACACACACACACACATATGCATTTATTATTTAGCCATAAAAGAA---GGATATCCTGCCATTTG-AAAAATGTGGAGGGT
GGATC----TTGAGGGAATTATGCTAAATGATATAATTCAAAC---ATTAAAAGACAAATCCTG-TATCATCTCATTTAT
ATGTTGAATCTG-AGCAAACTGAAATTATGGAAACAGAGAATAGAT-GGTGCTTACCAGAGATGGGGCGTGGGGAGGGTG
GGGGCAAAATGAGTGAAGGCGTTCAAAA--------CTTC-TGCTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------NNNNN
NNNNNN--------------------------------------------------------------------------
-----------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>Equus_caballus
AGTTTTTCTAGGCATTTCAAGCAGAGAGAATTGAACACAGGAAATACA---TT---AAAAACATATTGGA----------
--------CATTCATTGTAACATTATTTACAGTAGCCAAGATGTGAAAACAATCTAAGTGT--------GCATCTTTGGC
TGAATGGATAAAGGAAATATG-----------------------------------------------------------
GTACATATATATACA-ATG-TAATATTATTCAGCCATAAAAAAGAA-GGAAATTCTGCCATTTGCAACAACATGGA---T
GGACC----TTGAGGGCATTATGCTAAATGAAATAAGTCAAAT---AGAG-AAGACAAATATTG-TATGATCTCACTTGT
ATGTAGAATCTG-AACAAACCTAAATCATAGATACAGAGAACAGATTGGTGGTGTCCAGAGGTGGGGGGCAGGGGAGT--
-GGGTGAAATGAGTGAAGGTGGTCAAAAGGTACAAACTTCCAGTTAT--AAGGCCAATAAGTCCTGGGGATGTAAAGTAC
AGC--------ATGGTGACTCCAGTTAGCAATAC-GTAATGAATATTTGCAAATTGCTGAGAGAG---------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TAGAT
CTTGAA--------------------------------------------------------------------------
-----------AG-----TTCTCATCACAAGAAAA-AAA--TTTGTAAGTATGGGAGGT-GATTG--CTGTCAACTAAAC
TTATTGTGGTGATACATTTTGCAATATGTACATATATCAA---ATCA---TGTACACTTTGGACTAATACAA-TGTTATA
TGTCAGTTATATTTCAAT-AAACTGAGAAAAAAAGAAAAT---AAAA-CGT-ATTGAA---AGGATCAAAATAGCAAAAG
AGAAAA-GTAAGTGGTTACTCAAAA-TTGGGTGCTG
>Ceratotherium_simum
AGTTATTCTAGGCATTTCAAGCAGAGAGAATTCAGCACAGGAAATAAG---GT---AAAAACATATTGGA----------
--------TGTTCACTGCAGCATTATTTACAATAGCCGAGACATAGAAACAACCTAAGTGT--------CCATCTTTGGA
TGAATAGATAAAGAAAATATG-----------------------------------------------------------
--GTTTATATTTACA-ATG-TAATATTGTTCAGCCATAAGAAAGGATGGAAATCCTGCCATTTGCAACAACATGGA---T
GGACC----TTGAGGGCATTATGCTAAATGAAATAAGTCAAGG---AGAGAAAGACAAATACTG-TATGATCTCACTTAT
GTGTGGACTCTG-AACAAACCTGAATCGTAGATACAGAGAACAGATTGGTGGTGTCCAGAGGTGGGGGA-AGGGGGGT--
-GGGTGAAATGGGTGAAGTGGGTCAAAAGGTACAAACTTCCACTTAT--GAGACAGATAAGTCCTGGGGTTGTAATGTAC
AGC--------ACAGTGACTCCAGTTGACAATACTGCAATGAATATTTGCAAATTGCTAAGAGAG---------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TAGAT
CTTAAA--------------------------------------------------------------------------
-----------GA-----TTCTCTTCACAAGAAAA-AGAATTCTGTAGCTATGTGAAGT-GATTG--CTGTCAACTAAAC
TTATTGTGGTGATACATTTTGCAACATATACATATATCAA---ACCATGTTGTACACTTTGGACTAATACGA-TGTTATT
TGTCAATTATGTCTCAAT-AAACTGGGGAAAAAAGA-------AAAA-AAT-ATCAAA---AGGATCAAAATAGCAAAAG
TGAAAA-GCAAGAGGTTACTCAAAA-TTGGGTGCTG
>Myotis_myotis
CATTATTTTAGGCATTTCAAGCAGAGGGAATTCAACACAGGAAATAGG---TT---AAAAACATATTTGA----------
--------TATGCCTTGCAGCATGATTTATAATAAGCAGGACATCAAAACAGGCTATCTGTGGATACAAGTGTCTATGGA
TGAATGGATAAAGAAAATGTAGTATATGTA------------------------------------------------GT
ACATATATACACACA-ATG-GAATATTATTCAGCCATAAAAAAGAA-GGAAAGTCTACCATTTGCAACAACCTGGA---T
GGAATTTGATTGAGGGCATTATACTGAATGAAAT--GTCAAATAAAAAAAAAAGACAAATACCT-TGTGATCTCACTCTT
ATGTGGAATCTG-AACAAACTGAAATCCTAGATCCAGAGAACAGATTGGCGGTTGCCAGAGGTGCGTGG-AGGTAAGT--
-GATCCAAATGGGTGATGATAGTCAAAGGGCACAAACTTCCAGTTAT--AAAAAAAATAAGTCCTAAGGGTATAATGTAC
AGC--------ATGGTGACT--AGTCAACAATACTGTATTGTTTGTTTGAAAATTACTGCAAG-----------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TAGAT
AGTAAA--------------------------------------------------------------------------
-----------AGTTCTATTCTCATCACAAGAAAAAA-----TTATAACTATGTGAGGT-GATTG--CTGTTAACTAAAT
TTATTGTGGTAAT-AATTTTGCAATATATATGTATATCAA---GTCA---TGTATACTTTGGGCTAATTACA-TGTTATA
TGTCAATTATGTCTTACTTAAACAGGGGAAAGAAAA-------GAAA-CATGATTAGA---AGGATCAAAATAGCAAAAG
AGAGAA-GCAGGTAGTGATTGAGAA-CTGGGAGCTG
>Rousettus_aegyptiacus
AATTATTCTGGGCCTTTCAAGCAGAGAGAATTCACCATAGGAAATAAG---TT---AAAAACATGTTGGA----------
-TGTTCATCGTTCATTGTGGCATCATTTACAGTAGGCAAGACATCAAAACAGCCTAAGTAT--------TTTTCATTGGA
TGAATGGATAAAG----TATGGTGTGTGTG-------------------------------------TCTGTCTGTGTGT
ATACATATACATACA-ATG-GAATATTATTCATCTATAAAAAAGAA-GAAAATCCTG-CGTTTGCAACAACATGGG---T
GGAGC----TTGAGGGCATTATGCTAA---AAAGAAGTCGAA----ACAGAAAGACAAATACTG-TGTGATCTCACTTCC
ATGTGGAATCTT-AAAAAACTGAAATCATAGATACAGAGAATAGATCGGTGCTTGCCAGAGGTGTGAGG-AGG-------
-GGGCAGGTGGGGCAAAAGAGGTCAAAA-GTGCAGATTTTCAGCTCT--AAG-----TAAGTTCT-AGGATGTGACAGAC
AGC--------ATGGTGCCT--AGTTAATGGTACTCTATTGTAGATTTGCAAATTCCTAAGAAAG---------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TAGAT
CTTAAA--------------------------------------------------------------------------
-----------AG-----TTCTCATCATAGGAAAA-AAAA-TATATAACTATATTAGGT-GAT-----TGTTAACTAAAT
TTATTGTGGTAAT-CATTTTTCAGTATATACAT-TATCAA---ATCA---GGTATATTTTGGACTAGTAAAA-TGCGATA
TGTCAATTATATTTTAATAAAATGGGGAGAGGGAG--------AAAA-ACC-ATTGGA---AAGATGAAAATAGCCAAAG
GGAAGA-GCAAGTGGTTACTCAGAA-TTGGGAGCTG
>Condylura_cristata
AGTTATTGCAGGCATTTCAAGTAGAGAGAATTCAGCACAGGAAATAAG---TT---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------AAAA-TAT-ATCGGA---AGGGTCAAAACAGCAAAGG
AGAAAAAACAA--AGTTCTTCCAATATTAGAA-CTG
>Uropsilus_gracilis
AGCTATTCTAGGAATTTCAGTCGGAAAGAATTCAAAACAGGGAATGAG---TT---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------GAAA-CAT-ATTGGA---AGGGTCAAAACAGCAAGAT
GGAAAAAGCAACTGAGTATTCAAAT-TTGGAC-CTG
>Homo_sapiens
AGTTATTCTAGGCATTTCAAGCAGAGAGAATTCAACACAGGAAATTAG---TT---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------ATA--CAT-ATCAGA---AGG-TCAAAAGAGCAAAAG
AGAAAA-GCAAGTGGTTATTCAAAA-TTAGGAGCTG



Dog360_LINE

>L1_Carn7_3END
--------------------------------------------------------------------------------
--TTCACTTATATGTGGAATCTAAAAAACAAAACAAATGAACAAAAAAAAACAAACCAAACAGACTCATAGATACAGAGA
ACAGATTGGTGGTTGCCAGAGGGGAGGGGGGTTGGGGATGGGTGAAATGGGTGAAGGGGG-TCAAGAGGTACAAACTTCC
AGTTATAAAATAAATAAGTCATGGGGATGTAATGTACAGCATGGNGAATATAGTCAATAATATTGTAN------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------TAACNTTGTATGGTGACAGATGGTAACTAGACTTATTGTGGTGATCACTTCACAATGTATA
CAAAT--GTCGAATCACTATGTTGTACACCTGAAACTAATATAACAT--TGTATGTCAATTATACTCAAATAAAAAAA--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>Canis_familiaris
AATTA--CATATT--------C-----TA-----TGTCCTAAGGCAACAAATTTAAAAGCTT---ATA----AAATGAG-
--------TACATACAGAGATACAAAGATCACAGATATGGATAATAATTTAGTTGCCAGAGA---TCACAGATACAAATA
ACAGACTGGTGGTCACCAGGGCAG--GGTATGAGGGGGTGGGTGACAGGGACAGATGTGG-TC-AAAGGTATAACCTTCT
AGTTATAAGATAAATAAGTTCTGGGCATGTAATGTTCACCATGGTGACTATTGTTAGCAATAGTGTATTATATAACTGAA
AGTT----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TCATCA
CAAG------AAACAACTATAACTAT--GTAATGATAGATGCTACCCA--------GTGTTAATCATTTAGCAATATATA
CATATACATCTAATCA-TGTGTTGTACACCTAAAATCAACAGAATGT--TGTATGTCAATTATATTTCAATCAA------
----------TTTTTT---AAAAAACACAT-GGG---CAATTTCCTAGCCAAAACTTGATTC--AA--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AAGAAATTGAAAATTTAAAT-GG
>Felis_catus
AATTA--CATAGTAGGGAATAG-----TAAATGCTATCCTAAGGCAACAAATTTGAAAGCTT---ATGAAGCAAATGAG-
--------TAGAGACGGACA------------------------------------TGAACA---TCATGGATATGGAAA
ACAAAGTGGTGGTTGCCAGGGTCT--G-------GGTGTGGATGGCATGGATAAAAATGG-TCAAAAGGTACAAACTTGC
AGTTATAAGACAAGTAAGCTCTGGGCATACAATGTACAGCATGGTGACTACAGTTATCAATAATGTATTGT--ATTTGAA
AGTTGCT--GACAGTAAATCTTAAAA------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------GTT-TCATCA
CAAGAAAGAGAAACAATTGTAGCTGT--GTCGTGATAGATGTTAACT--------TGTGCTGATCATTTAGCAATATATG
CATAC--AGCAAATCA-TATGTTGTATACCTAAAACTACTAAACTGT----TATGTCAGTTATATCTCAATCAATCAATT
AAAAAAAAAA----AA---AGAAAACACAT-GAG---CAATTTCTTACCCAAAACTTAATCCAAAA--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AAGAAGATGACAACTGTAAT-GG
>Manis_pentadactyla
AATTATGCGTACTATGGAATAC-----TACATGTTATCCTGAGGCAACAAATTTAAAAGCTT---ATAAAACAAATGGG-
--------TACATA------------------------------------------CAGAGA---TCATAAATACACATA
ACAGACTGGTGGTTGCCAGAGTG-----------GGGGTGG---AAATGGATAAAGGTAG-TCAAAAGGTACAAACTTCT
AGTTATAAGATAAATCAGTCCTGGTCATGTAATGTATAGCATGGTGACTTCATGTAACAATCATGTAC-----ATTTGAA
AGCTTCCTA-AGAGTGTATCATAAAA------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------GTTCTCATCA
CAAG------AAATAAATGTAACTAT--GTGGTGATAGATGATAACTAAAATTATCGTGATAATCACTTAGTAATATATA
TATAT----TAAATAACTATGTTGTACATCTAAAACTA---CAATGT---------CAATGGTCTCTCAAAATAAATAAT
TAAAAAAACA---ACC---AAAAAACAAATGGGG---AGATTTTCCAGCCAAAACTTGACCC-AAA--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AAGAAACTGAATACTTTAAT-GG
>Sus_scrofa
AATTA--TTTATTAAGGAATAC-----TACATGTAATCTCAAGGAAACAAATTTAAAAGCCT---ATACAGCGAATGCA-
--------TACATA------------------------------------------CAGATA---TCAGAGATGCAGAGG
AGAGACTGCTGGTTGACAGGGGCT----AGGTCCAGGGTGGGCAAAATGGGTGAAGGCGGATCAAAAACTACAAAGTCCT
AGTTACAGAATAAAT----CCTGAAG-----ATGTGCAGCATAGCGAC-------AATAACAATGTATCACATATTTGAA
TGTTGCTAAAAGAGTAACCCTTAAAACATTCTTTTCATGGAGTTCCCGTCCTGGCGCAGTGGTTAACGAATCCGACTAGG
AACCATGAGGTTGCGGATTCGATCCCTGCTCTTGCCCAGTGGGTTAAGGATCCAGCGTTGCTGTGAGCTGTGGTGTAGGT
CAAAGACGTGGCTCAGATCCTGAGTTGCTGTGGCTCTGGCATAGGCCGGTGGCTACAGCTCTGATTAGATCCCTAGCCTG
GGAACCTCCATATGCTGGGGCAGCGGTCCTAGAAAAGGCAAAAAGACAAAAAAAAAAAAAAAAAAAAAAGATTCTTTTCA
CAAGAAAAAAAAATTGT--TAACTATGTACCATGATGGATATAACCATATATTACCGTGATAGTCACCTCACAACACAGA
CATGT--ATCAAGTCAC------------------CTGAGATAATGTTACATATATCAATTATATTTCAACTAAAAATTA
ATACAAATTT----TT---AAAAAGCAAAA-GGA---CAATTCCCTAGCCAAAATTTGATCC-AAA--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AAGCAGCAGAAAACTTTAAT-GG
>Tursiops_truncatus
AATTA--TGCATTAGGGAATACTATAATACATGTTATCCCAAGGTAACAAATTTAAAAGCCT---ATAAAGCAAATGGG-
--------TACATACAGATATC----------------------------------CAGAGA---TCACAGATACGGAGA
AGAGACTGGTGGTTGTCAGAGGCT--GAGTATG-GGGGTGGGCAAAATGGGTGAAAGTGG-TCCTAAAGTACAGCCTTCC
AGTTATAGAATAAGTAAGTCCTGAGGATGTAATGTAAAGCATAGTGACTACAGTTAACAGTAAGGTATCAGATATTTGAA
TGTTGCTAAGAGAGTAGATCTAAAAA------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------GTTCTCTTCA
CAAG--AAAGAAGCTATTGTAACTATGTGTGGTGACAGATGTAAACTAAGCTTACTGTGGTAATCAATTCAG--------
----------AAATCA------------CCTGAAACTAATACAATGTAATACATGCCAATTATATTTCAATATAAAA---
TAAATAATTT-----T---AAAAAGCAAAT-GGA---ATATTTCCTAGCCAAAACTTGATCC-GAA--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AAGAAGCTGAAAACTTTAAT-GG
>Equus_caballus
AATTA--CATATTAAGGAATAC-----TACATGTTCTCCTGAGGCGACAAACTTAAAAGCCT---ATAAAGCAAATAGG-
--------TACATA------------------------------------------CAGAGA---TCGTAG---------
-CAGATCGCTGCTTGTCAGAGGTG--GAATGAGGCGGGTAAGCGAAATGGGTAAAGGTGA-ACAAAAGGCACAAACTTTC
AGTTGTAAGATAAAA----CCTTGGGATGTAATGTACAGCATGATGACTACTGTTAACAATAATGTACTGTGCATTTGAA
AGTTGCTAAGAGAGTAAATCTTAAAA------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------GTTCTCAGCA
CAGGAAAAAGAAACAATTGTAACTATAAGTGGCAGT-GATGTTAACTAAACTTACTGTGGTAATCATTTTGTAATACGTA
CATAT--AACAAATCATTATGTTGTGTACCTAAAACTAATACAATGT--TGTATGTTGACTATATCTCAGTAGAAAAA--
TAAGTAATTTTTTTTA---AAAAAGCAAAT-GGG---CAATTTCTTAGCCAAAACATGATCC-AAA--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AAGAAGCTGAAAACTTTAAC-GG
>Ceratotherium_simum
AATTA--CATATTAAGGAATAC-----TACATGTTATCCTGAGGCAACAAATTTAAAAGCCT---ATAAAGCAAATGGG-
--------TACACATAGAGATATAAGGATA--------------------------CAGAGA---ACACAGGTACAGGTA
ACAAATTGGCATTTGCCAGAGGGT--GAGTGTGGGAAGTGGGCGAAATGGGTGAAGGGGG-TCAAAAAGTACAAACTTCC
AGTTATAAGATAGGT----CCTGGGGATGTAATGTACAGCATGATGACTACAGTTAATAATAATGTATTCTATATTTGAA
AGTTACTAAGAGAGTAAATCTTAGAA------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------GTTCTTATCG
CAAG--AAAAAAACAATTGTAACTATGAGTGGTGAT-GATGTTAACTAAACTTATTGTGGTAATCATTTTGCAGTATACA
CATAT--ATCAAATCATTATGTTGTACATTTAAAACTACAACAATGT--TGTATGTCAATTATATCTCAGTAAAAAAATA
TATAAAATTTTTTTTA---AAAAAGCAAAT-GGG---CAATTTCCTAGCCAAAACTAGATCC-AAA--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AAAAAGCTGAAAACTTTAAT-GG
>Myotis_myotis
AATTA--CATATTAGAGAATAC-----TACATGTCATCCTGAG---ACAAGTTTACAACTAT---AAA--GCAAATGGG-
--------GAGATAGAAAGATA----------------------------------CAGAGA---TCAGAGATATAGATA
T----TTGGTGGTTGCCA--------------------------------------------------------------
--------------TAAGTTCTGG-CTTGTAATGTATAGCTTAGAGACTAGAGTTAACAATCTTATATTGTATATATGAA
AGCTGCTAAGAGAATAAAT-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--AAGAAAAGAAACTACTGTAACTATGTGTAGTAATGGATATTAACTAAACTTGATGCAGAAATCATTTTGCAATACGTA
CATAT--ATCAAATCATTATGTTGTACATTGAAAACCAATGTAATGC--TATATTTTGATTCTACCTCAACAAAACATTT
AAAATAT------------CTGAAGCAAAT-GGG---CAATATCCCAGCCAAAACTTGATATAAAA--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AA-----TGAAAACTTTAGT-GA
>Pteropus_giganteus
AACTG--CTTATTAGAAAATAC-----TGCATGTGATCCCGAG---ACAAATTTAAAAGCCC---ATAAAGCAAATGGA-
--------GAGAGATA----------------------------------------CAGAGA---TCATGGCTATAGATA
CCAGATTGGTGGTTGCCACAGGCA--------CAGATGTTGGTGAAATGTGTGAAAGTGG-TC-AAAGGTAAGAATTTCC
AGTTATAA---------GTCCTGGGCATGTAATGTACAGCATGGTAACTAGAGTTAACATTACTGTATTGTATATATGAA
AGTTGCTAAAAGAGTAAATCTTAAAA------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------GTTCTCATCT
CAAG-AAAAGAAACTATTTTAACTATGTGTGACGATGGATGTTAACTAAACA----------------------------
-------ATCAAATCATTATGTTGCACATCTAAAACTAATGCAATGT--TGTATTTCAATTGTATCTCAATAAACAAAAT
TAAAAAAAAT---------AAAAAACAAAT-GGG---CAATTTCTCAGCCAAAACTTGATGC-AAA--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AAGAAGCTAAAAACTTTAAT-GA
>Condylura_cristata
AACTA--TGCA----------------TGAATGCTGTCCTGGGGCAACAAATTTAAAAATCC------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------ATAAAGGAAAT-GAG---TAATCTCCTAATTAATATTTGACCC-AAA--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AAGAACATAAAAGCTTTTACAAG
>Sorex_araneus
AATTA--TGAGTTAGGAAATAT-----TACATGTTATCCTGAG--AACAAATTTAAAAGCCT------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------ATAAAACAAAT-GGG---TAATC--------AAAACTTGATCCAAAATGAAAACTTCTTTT
TCCCTTTGAAGTGGCCAAAGCTAGCAGTAACTCCGGGGATACCCTTGGCTGTGTTCAGGTGCTACTCCAGCAGAGACCAG
CAGGCCAGAGGGATGTTGAAGGGCAAACCAAGGCTGCCCACGTGCAAGGCCCGCGCCTCAATAACTCTACTATTTCTCAG
GCCCTGAGAAACTGAAAACTGTAACAGG
>Galeopterus_variegatus
AATTA--TGTATTAGAGAATAC-----TACATGTTATCCTGAGGTCAAAAAATTAATAGCCT------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AAA--GCAAAT-AGG---CAATTTCCTAGCCAAAACTTGACCC-AAG--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AAGAAACTGAAAACTTTAAT-GG



Dog361_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------TTTTTCCAGCTTTATTGAGG-TATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACG-TGATGT
TTTGATA-TACG-TATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATC-ACCTCACATAGTTACCA
TTTT---TTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAAATTTCAAGTATACAATACAGTATTATTAACT
ATAGTCACCATGCTGTACATTAGATCTCCAGAACTTATTCATCCTGCATAACTGAAACTTTGTACCCTTTGACCAACATC
TCCCC---------------------------------------------------------------------------
--------
>Canis_familiaris
GGCCCACGTTCTC--ATGG-GCT---AATAATATTGTTGGTAC---TTTATTACCAAAC---TAAAATTT----------
-------------------------TTAAATTTGTCATT-----------------------------------------
-----------AATTATTATTTT---------------------------------------------------------
---CTTTCTTTTTTTAC----ATTGGAA-TGTAATTGACTTAT-AACATTGCATTCATTTTAGGTGTACAACA-TAATTA
TTTAATT-TATG-TATGTATTGTGAAATGATTATGACAATAAGTCAGGTTA--ATATCCATC-ACCTCACATAGTTA-TA
TTTT---TTTTCTTATAATGTGAACTTTCAAGGTCTGCTCTCTCAGCAACTTTCAAATATATACCACAGTGTTGTTTACT
GTCATCACAACTCTATTCTTTACATCCTCAGGACTTATTTATCTT--ATAACTGGAAGTTTGTGCCTTTTGACAACCT--
--------TAG-AATAT---GATTTCCATTCAG--------------TAATGCAACTT----GGAGTACCAATGCTAATA
GATGAGTT
>Felis_catus
GGCCAATGTTCTC--ATGG-ACT---AATAGTAACGTCGGTAC---TTTATAACCAAAA---TTGAACTT----------
---------------------TAAAAAAAATCTGTCACT-----------------------------------------
-----------TATTATTATTAC---------------------------------------------------------
----TTTCTTTTTTTAG-----TTGAGA-GATATTTGACATAT-AACATGGTATTCATTCTAGGTGAACACCA-TAATGA
TTTGATATTAGG-TATAGACTGTGGACCGAT-ACAACAATAAGTCTAGTTC--ACATCCACC-ACCTCGCATAGTTA-CA
ATAT---TTTCCTTACAATGTGAACTTTCCAAGTCTACACTCTTAGCAACTTTCATATATATAATACAGTGTTGTTAACT
ATAGTCACCATGCTGTTCATTACATCCTCAGGACTTATTTT------ATCTCTCTAAGTTTGTGCCTTCTGACCGTCT--
--------TAG-AATAT---GATTTCCATTTAA--------------CGATGCAGATT----GGAGTACCAATGCTAATA
GATGAGTT
>Manis_javanica
GGCCACTGTTCCCCTCTGG-CCT---GATAATAATGTTGGTGC---TTTATTACCCAAA---TAGAAGTT----------
------------------------TTTAAATCTGTTGTT-----------------------------------------
-----------CATTATTATTTT---------------------------------------------------------
CTTCTTTCCTTTTTTAA----------------ATTGAGATAT-AACAGTGTATTAGTTTTAAGTGTACAACA-TAATGA
TTTT----TATACTATGTAGAGTGAAACGATTACCACATTAAGGTTAGTTA--ATATTCATC-ACCATCTACAGTTAACA
ATTT--TTTTCCTTGTCATGTGAATTTTTAAGATCTACTCTCTCAACAACTTTCAAACATACAATACAGTAGTGTTAACT
GTAGTCACCGTGCTATTCCTTACATCCTCAGGACTTACTTATCTT--ATAACTGGAAGTTCATACCTTT-GACCAGCT--
--------TGG-AGTTT---GCCTTCCACTCAG--------------CAGTGCAGATA----GGAGTANNNNNNNNNNNN
NNNNNNNN
>Sus_scrofa
GGCCAATATTCCC--ATGG-ACT---AATAATAATGTTGGTAC---TTTATTATGAAAA---CAGAATTT----------
---------------------------TTATCTACCATT-----------------------------------------
-----------CATTATT--------------------------------------------------------------
------TTTTTCCTTAA----GTTGAGA-TATAATTGACATAT-AACATTGTATTAATTTTAGGTGTGTAACA-TAATGA
TCTGATG-TATA-TGTGTATTGTGAAATAATTACCACAATAAGTCTAGTTAACATAGGTGTTAACTAAATAGAGTTA-TA
ATTTGTGTGTGTGTGTGATATAAACTTTTAAGGTCTACTCTCTTGGCAGCTTTCAAAT-TACCATACGATATTGTTAACT
ATAGTCACTCTGCTGTTCATTACTTCCTCAGGACTTATTTT------ATAATCGAAAATTAGTACCTTTTGACTACCA--
--------TGG-TATTT---GATTTCTATTCAG--------------CAGTGCAGATT----GGTG-----ATGCTAATA
GATGAGTT
>Bos_taurus
GGCCAGTGTTCCC--ATGG-ACTAAAAATAATAATGTCGGTAC---TTTATTAT---AA---CAGAATTT----------
------------------------TTTAAATCTATTGTTGTTTTTTTATTAAACTATACTTGATATA-------------
-----------CATTATTGTGTTGGTATCAAGTGTACAACAAAATGGTTCAGTTATATATATATATTCTTCTCATATGTT
TTTCTTTCCTTTTTAAA----ACAGAAA-TACAATTGATATAT-AACATTGTATTAGTTTTAGATATATAATG-TAAAGA
TTTTATA-TATA-TGTATATTTTGAAACAATTATTAAGGTAAGTTTAATTAGCATAGATGTCAATTACACATAGTTATAA
TTCT---TTTTCCTGTGATGTGAACTTT-AAGATCCAGTCTCTTGGCAACTTCCAAATAGATCATATGGTCTTGTTAACT
ATAGTCATCCTGCTGTTCACTACATCCTCAGGACTAATTTATGTC--CTAACTGGTAGTTTGTCCCTTT----CACCT--
--------TGG-AATTT---GATTTCCATTAAGAAATCATTTGATTTTGATGCAGATT----GGTATATGGACACTAATC
GAT-AGTT
>Equus_caballus
GGCCAATGTTCCC--AAAG-ACT---AGTAATAATGTTGGTAC---TTTATTACCAAAA---TGGAATCT----------
-------------------------TTTAACCTATCATT-----------------------------------------
-----------CATTCTTATTTT---------------------------------------------------------
--TCTGGTTTTTTTTAA----ATTGAGC-TATCATTGACACAT-AACAGTGTATTAGTTTTAGATGTACCACA-TAATGA
TTTGATA-TATG-TATATATTGTGAAATGATCACCACAGTAAGCTTAGTTA--ACATCCATC-ACCACATATACTTA-CA
TTTT---TTTTCTTGTGATGTGAA-TTTTAAGACCTAGTCTCTTAGCAACTTTCAAATATATAATACAGTATTGTTAACA
ATAGTTATCATGCCATTCATTACATCCTCAGGACTTATTTATCTT--ATAACTGGAAGTTTGTACCTTTCGACCACCT--
--------TAG-AATTT--------TCATTCAG--------------CAATGCATATT----GGAGCCCCAATGCTAAGA
GATGAATT
>Ceratotherium_simum
GGCCAATGTTCCC--ATAG-ACT---AATATTAATGTTGGTAC---TTTATTACCAAAA---TGGATTTT----------
-------------------------TTAAAGCTATCATT-----------------------------------------
-----------CATTATTATTCA-----------------------------------------------------TATG
TTTGTTTCTTTTTTAAA----ATTGAGATTATCATTGACATAT-AACAGTGTATTACTTTTAGGAGTACAACA-TAATGA
TTTGATA-TATG-TATATATTATGAAATGATCACCACGATAAGCTTAGTTA--ACATCCATC-ACCACATATAGTCA---
------------------------CTTTTAAAATCTACTTTCTTAGCAACTTTCAAATACACAACATAGTATTGTTAACA
ATAATCATCATGCCATTCATTACATCCTCTGGACATATTTATCTT--ATAACTAGAAGTTTGCACCTTTTGACTACCT--
--------TGG-AATTT--------TCATTCAG--------------CAATGCAGATT----AGAGTACCAATGCTAATA
GATGAGTT
>Condylura_cristata
GGCTGGTGTTTTC--ATGGGACT---AAT-CTAATGTTGGTCC--TTTTATTATCAAAA---TTAAATTT----------
-----------------------------ATTTATCAAT-----------------------------------------
-----------CATTGTTATTTT---------------------------------------------------------
------TATTTTTTAAA-------------ATAATTGATATTA-AACATCGTATTCATCTCAGGTGTACA-CA-TAATGA
TTTAC---TATT-TATATAGACTGAAATGATCAGCATTGTGCATGTAGTTA--ACATCTGTT-ACCACA---------CA
TTTT---TTTTCTGGTGCTGTGAACTTTTAAGATCTACTCTCTAAGCAGACATCAAATACACGACACAGTATTGTTAGCT
ATT-TCACTATACTGGACATTCCATGCCCAAGATTTCTCTT------GTAACTAGAAATCTGTGCCTTT-GACTACCT--
--------TTA-AATTT---TATTTCTGCTTAT--------------CAATATAGGATATCAGCCATACTGATACTAATA
GATGAAGT
>Erinaceus_europaeus
AGTCAATGGCCCC--AAAG-ACT---AATAACAATGTGAGTAG--CTTCATTACTCAAA---TAGAATTT---TGAGGGT
CAGTGATTTATATTACAGTTGTTGATACAATTTCTCATCTCCCCATAATAAGTATCTGCAGAACACACTCATCCCCAGCT
TGGGCCTTTTCCATTCTCATGCA---------------------------------------CCAGGACCTCACATCATT
TATTATACTTTCCTTCATTTTGTTGAGA-TATAGTTGACGTAT-CACATTATAATATCCTTAGGTATATAACATTAGTGG
TTTCATA-TATG-TATATACTGCACAGT----ACTATGATAA--CTATTCAATATAT-----------------------
-----------------------------------------------------------TATTACAAAATACTGTTAATC
ATAGCCACCAAGATG-----CATGTCCCTAGTATTTACTG-------ATAACTTGAAGTGTGTACTTTCTGACTACCC--
--------TGGAAATTT---TATTTCCATTCAG--------------CAATGCAAATT----AGAGTACCAGTGTCACTA
AGTAGGTT
>Myotis_myotis
GGCCAATGTTCCC--ACAG-ACT----ATACTAATGTTGCTAC--TTTTATTACCAAGA---TAGAATTT----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------GATTTCCATTCAG--------------CAATGAAGATT----GGAGTAACAACACTAATA
AATGAGAT
>Rousettus_aegyptiacus
GGCCAATGTTCCC--ATAC-ACT----TTAATAATGTTGGTATTATTTTATTATCAAAA---TAGAATTT----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------GATTTTCATTCAA--------------CAATGCAGATT----GGAGTACCAATACTAATA
CATGAGAT
>Homo_sapiens
AGCCGATGTTCTC--ATTG-GCT---AATAATAATGTCAGTAC---TTTATTGCCAAAA---TAGAATTT----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------GATGTCCATTTGG--------------CAATACAGATT----GGAACACCAATGCAAATA
GTTAAGCA



Dog362_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
---------------------------------------------------------------ATCTAAAAAAGTCAAAC
TCATAGAAGCAGAGAGTAGAATGGTGGTTGCCAGGGGCTGGGGG------GTGGGGGAAATGGGGAGATGTTGGTCAAAG
GGTAC-AAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGTACAGCATGGTGACTATAGTTAATAATACT
GTA------------TTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAG--TGTTCTCACCACACAC--------A
AA---AAAATGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTAT
----ATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA
--------------------------------------------------------------------------------
-----------------------------------
>Canis_familiaris
TTTTTTTGCTTCTTATGAAGTCTTACATGACAATAAAGGAT---------------------------------------
-----------------------------------TTTGAGAT---AAACAAAGTAGAGG---------GAAAATTAAAC
TCCTAGAAAC--AGAGTAAGAAAGTGGTTGCCAAGGGCCTGGGGAGTAGAATGGGAAAAATAGAGAATGCTTGGTAAAAT
GCTAA-AAACTTGCAGTTAT--AAAATGAATCAAGTCTGAGGATCTGACATACAACTTGATAACTATAATTGGAA-----
---------------TTGTATAATTGAAATTTATTGAGAGAGTAGAGTTTAAA--TGTTCTCATCCTCCCT--------A
TCC--CCAAAGGTAAGTATGTAAGATCATAAATGTGTTAATCAATTTGTTTTTAGGAATCCTTTCACAACATATATGTAT
----ATCAAATCATCACATTATATAGTTTAAATATCCTAAATT----TTTGTCAATTATCCCTTAATAGAGCTGAAAAAA
A----------TCC-----AAAGAGAATGTACT---TTAATAAA--------------AAAAT----------GTTAATG
GAGAA-----TAAATGGGGATTATTTTTAATTTTA
>Felis_catus
TTTTTTTGCTTCTCGTGAAATCTTACGTGAGAGTAAAGGAT---------------------------------------
-----------------------------------TTTGAGAT---AAA----GTATAGG---------GAAAGTTAAAC
TCTTAGAAAC--GTAGTAGGAAAGTGGTGTCCAAGACCTGAAGG-GTGAAATGGGAGAAATCAAGAATGGTTGGTAAAAT
GGTAA-AAACCTTTAGTTTT-TAAGATGGATCAGGTCTAAGGATCTAATGTATAACATGGTAATTATACTTGATAATTAT
ACATAGTAAATATACTTGCATATTTGAAATTTGTTAAGAGAGTAGAGTTTAAA--TGTTCTCATCCTCCCC--------A
CCC--CTAAAGATAAATAAGTGAGGTGATGGATGTGTTAATCAA----ACTGTAGGAATTCTTCCACAACATATATGTAT
----ATCAAATCATCATATTATACATTTAAAATATCTTACAAT----TTTGTCAGTTATGCCTCAATAAGGCTGAAAAAA
AAA--------TCC-----AAACAGAATGTAGC---TTAAAAAAT----------------------------GTGAATA
GATAA--GTGTAAATGGA-ATTACTTTTCATTTTA
>Manis_pentadactyla
TTTCTTGGCTTCTCATGAAGTCTTACATGACAATAAG-AAT---------------------------------------
-----------------------------------GTAGAGAT---AAACAAGGAACAGG---------AAAAGTTAAAC
TCACAGAAAC--ATAGTAGAAAAGTGGAAG---AAAGCTGGAGG-------GTGGGGAAATAGGGAGTGATTAGTAAAAG
AGTAT-AAACTTGCTGTTAT--AAGATGAATAAGGTCTGAGGATATAATATATAACATGGTAGCTACAGTTGAGAACACT
GTA------------TTATATAACTAAAATTTGCTAAGAGAGTAGAACTTAAATTTGTCCTCCTTGCCCCCCACCTCAAA
CCCTGCCAAAGATAATTATGTGAGGTAATGGATGTGTTTATTAAATTCATTGTGGGAATCCTTTCACAATGTATACGTAT
----ATCAAATCATCACATAATACTCTTTAAATGTCTAACAGT----TTTATCAATTATATCCCAATAAGGCTGAAGA--
-------------------AAAAAGAGTGCGGG---TTCAAAAGTATT----TTTTTTAAAGT-----------------
---------GTAAATGAAGAATACTTTTTATTTTA
>Sus_scrofa
TTCATTGGTTTCTCATAAAATCGTACATAAAAATAAA-GAG---------------------------------------
-----------------------------------TTTGAGAT---AGACAGAGGGTAGG---------AAAAGTCCAAC
TCATAGAAAGAGACAGCAGAAAAGCAGGTGCCAGGGGCTGAGGG------GTGGGAGAAATAGGTA-TGATCAGTAAAAG
GATAT-AAACATTCAGTTAT--AAGATGAATAAATTCTGAGGATCCAATACAT---------------GCTGATAACACT
GTA------------TTGTAGGATTGGAATTTGCTAAGACAGTAAAACTTAAA--TGTTTTCATCCC-------------
-------------------ATGAACTGATAAATGTGTGCATCAATGTCATTGTGGTCATT-TTTCACAATGTATATGCAT
GTACATCAAATCATCACACTGCAGATTTTAAAC-TCTCACACT----TGCAGCAGTTCCCACCCGTGAATTATTAGAAAA
GGAGA-------AC-----AAANNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>Tursiops_truncatus
TTTATTGGCTTCTCATAAAATCTTCCATAACAATGAA-GAT---------------------------------------
-----------------------------------TTTGAGAT---AAACAGAGTGTAGG---------AAAAGTCAAAC
TCATAGAAACAGACAGTAGAGAAACGGTTGCCGGGGG-------------GTGGGGGAAATAGGGAGTGATGGGTAAAAT
GATAT-AAACTTTCAGTTAT--AAGATGAATAAATTCTGGGGATCCAATGTATAACATGGTGACTATAGTTGATAACACT
GTA------------TTGCATAACTGAAATTTGCTAAGACA-TAGAACTTGAA----------------CC---------
-----CCAAAGATAAATATATGAGGTGATGAAAATGTTAATTAACTTCATTGTGGGGATTCTTTCACAATGTATATGTAT
GTATATCAGATCATTATATTGTACACTTTAAATATCTTGCACC----TGTAGCAATTTCCATCCTGGAATTATTAGAAAA
GGAGA-------AC-----AAANNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>Equus_caballus
TTTCTTGGCTTCTCTTGAAATCTTACACAACAATAAA-GAT---------------------------------------
-----------------------------------TCTGAGAT---AAACAGAGTGTATG---------AAAAGTCAAAC
TCAGAGAAACAGAGAGGAGAAATGTGATTGCCAGGGGCTGGAGG--TGAAGGTGGAGAAATAGGGAGTGGCTGCTAAAAG
AGTATAAAACTTTCAGTTAT--AAGAGGAATACGGTCTGAGAATCTACTGTATAACGTGGTGACTAGAGCTGATAACACT
GTA------------TTATATGATTGAA-TTTGCT--GTGAGTAGAACTTAAA--TATTCTTACATCTTCC---------
-----CCAAAGATAAATATGTGAGGTGATGGATGTGCTAATTAACTTGATT-TGGGAATCCTTTCATAATGCATATGCAT
----ATCAAGTCATTACATTGTACACTTTAAATATCTTATAAT----TTTGTCAATTATACTTCAGTAAGGCTGAAAAAA
AAAGAAAAAAAAACCC---AAAATGAGTGTAGG---TTCAAAAATATAAAAAAATAATAAAGT----------GTGAATG
GAGAATAGAGTAAAAGGAGACTCCTTTTTGTTTTG
>Ceratotherium_simum
TTTTTTGGCTTTTCTTGAAATCTTACATGACAATAAA-GAT---------------------------------------
-----------------------------------TTTGAGAT---AAACAGAGTGTAGG---------AAAAGTCAAAC
TCATAGAAACAGAGAGTAGAAAAGTGGTTGCCAGGGGTTGGGGG--TGGGGGTGGGGAAATAGAGAGTGGTTGGTAAAAG
AGTATAAAATTTTCAGTTAT--AAGATGAATAAGGTCTGAGAATCTAATGTATAAAGTGGTGACTATAGTTGATAACACT
GTA------------TTGTATAATTGAA-TTTGCTACGAGAGCAGAACTTAAA--CATTCTCATATCCCCC---------
-----CAAAAGATAAATATATGAGATGATGGATGTGTTAATTAACTTGATTGTGGGAATCCTTTCATAGTGTATATGTAT
----ATCAAATCATCATATTGTACACTTTAAATATCTTATAAT----TTTGTCAAATATACCTCAATAAGGCTGAAAAAA
AAAGAAAAAAACTCAA---AAAATGAGAGTAGG---TTAAAAAATATAAAAAAATTATAAAGC----------GTGAATG
GAGAATAGAGTAAATAGA-ATTACTTTATATTTTA
>Myotis_myotis
TTTCTTGGTTCCTCATGCAATCTTACAAAATAATAAT-GAT---------------------------------------
-----------------------------------TTT------------------TAGG---------AAAGGTCAAAC
TCATAGAAACAGAGAATAGAAAAGTGATTTTCAGGAGCTAGAAG------ATGGGGAAAATAGAGAGTAGTTGATAAAAG
GGTGT-AATGCTTCAGTTAT--AAGGTGAA-----------AATCTAATGTAAAACATGGTGACCATAGTTGATAACATT
GTA------------TAGTATAATTGAAATTTGCTAAGAGAGTAGAACTTTAA--TGTTTTGAAATCCCAC--------C
AC---CAAATAATAACTATGTGAGGTGATGGATGTGGTAAT-AACTCAATT-TGGAAATCCTTTCACAATGTATGCATAT
----AACAAATCATCACATCATATACCTTAAGTATCTTACATT----TTTTTC--TTTTACCTCAGTAAGGTTGAAAAAA
-----------ATCCA---------------AT---TTTTAAAATGTAAAAACAT-------------------------
--------------TAAAGATTACTCTTTATTTTA
>Rousettus_aegyptiacus
TTTCTTGGTTTCTTATGAAATCTTTCATGCCAATAAA-GAT---------------------------------------
-----------------------------------TTT------------------CATT---------AAAAATAAAAC
T--------------------------------------------GCAAAGTGGAGGAAATAATGAGAAGTTGGTAATAG
GGTGC-AAGCTCTCAGTTTT--AAAATGAA-----------AATGTAATATAAAACATGGTGACTGTAGTTGATAATATT
GTA------------TTACATATTTGAAATATGCTAAGAGAGTAGAACTTTAATGTATTTATACTTCTCCC--------T
GCCCCTGACAAACAATTATGTGAAGTAATGGATAT-------AACTTCATT-TGGGAGTCCTTTTACAATATGTACATAT
----GTCA---CATCACATTGTATACTTCAAATACCTTACAAT----TTTGTCAATT-TACTTCAATAAGGCTGAACAAA
----------AATC--------A-GAGTGTAAT---TTTAAAAATATGAAAACA--ATAAAAT----------GTAAATG
GAGAACAGAGTAAATGGAGATTATTTTAT-TTTTA
>Condylura_cristata
TTTCCTTACTTCTTGTGTAATCTT-CATGGCAATAAA-GAT---------------------------------------
-----------------------------------ATTGAGAT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AAAC--AGTGTAGG---TT----CATTCTAATATAATTTAAAGT----------GTGACTA
GAGAA-----TAGATAGGGATTCCATTTTGT----
>Uropsilus_gracilis
TAGCTTTATTTTTCATGAAGTCATGTA-GATTATAAAATATATATTTCATAAAATCTTATATAGATTATATGTTATATTT
CTATAAATAGAAACCTTATATCTCAAAATGAAGGTTTTGAGAT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AAAC--AGTAGAGG---TTTAAGTATACAAGAAAAATATGAAGT----------GTGAAAG
AAGAATAAAGTATATGGAGATTACTTT-TATTTTG
>Homo_sapiens
CTTCCTGGCTTCTCATAAAATAGTCCATGACAATAAC-AAT---------------------------------------
-----------------------------------TTTGAGAT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------GAGCTTAGTGTAGG---TTGAAAAATATAAAAAAG----AAAACATAATTTTAAATGAATG
GATAATAGAGTAAATGGAAATTACTTTTTATTGTA



Dog363_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
-------------TTTTTCCAGCTT----TATTGAGGTATAA-TTGACAAATAAAAATTGTATATATTTAAGGTGTACAA
C-GTGATGTTTTGATATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTA----------------------
--------------------------------------------------------------------------------
-----------------------ACATATCCA-TCACCTC---------------------------------------A
CATAGTTACCATTTTTT-TGTGTGTGGTGAGAACACTTAAGATCTACTCT-CTTAGCAAATTTCAAGTATACAATACAGT
ATTATTAACTATAGTCACCATGCTGTACATTAGATCTCCAGAACTTATTCA-----------------------------
-----------------------------------------------
>Canis_familiaris
AGTATTATTTTATTTTGGCTGGATTCCCAACATTCTGC-TTATCCAGCCTC---AGGCCATGGGGTTCTT---C------
----------TCCCCCCTCCTTTTT----AATTGAGATATAA-TTAACATAC-ACCATTGTGTAAGTTTGAGGTGTACAG
G-GTATTGATTTGATATGTTTAT--ATTGCAAAATGATCGCCATCCCCAGGTTGGCTC----------------------
--------------------------------------------------------------------------------
-----------------------ACACCTCTG-TCCCACC---------------------------------------A
TGTAACTATTGTTTCTT---CTAGTAGTGGGAACAATTAAGACCTAATCCTGCCAGCAAGTTTGATGTTTATAATCCAGT
TTTGTTGCCAATAATCACTATATTATGTATTAGTTCTCCA--------------AGGCCA----TGGGATTCTA---GAA
ACTTCTAAATCAATAGGAAGGAATGGTTTGGAGGTCTGAAGTGGAGG
>Felis_catus
AGTATTATTTTATTTTGGCTTGACTCCCAACAT------------ACACTC---AGGCCAGGGAGCTCTT---CCTTTTG
TTTTATTTTTTGTTTTGTTTTGTTT----AATTGAGATATAA-TCGACATAT-ACCATTGTGTAAGTTGAGGGCGTACAG
C-GTATTGATTTGGTACGTTTAT--ATTGCAAAAGAATTGCCGTTGCAAGGTTAGCCA----------------------
--------------------------------------------------------------------------------
-----------------------ACACCTCTGTTCCCATC---------------------------------------A
CGCGACCATCATTTCTTCTACTAGGAGTGGCAACAATTCAGGTCTACTCT-GCCAGCAAGTTCGAGGTTTATTATACAAT
TTTGTCGCCTCTAATCACTCTACTGTGTGTTAGACCTCCA--------------AGGCCA----TGGGATTCCA---GAA
ACTTCTAAATTGGTAGGAAGGAATGGTTTGGAGGTCTGAAGCGGAGG
>Manis_pentadactyla
AGTATTATTTTATTTTGGCTTGATTCCCAGCATTCCTC-TTATCCACACTC---AGGCCATGGGCTTTAA----------
--------------------TAAAA----AATAGAAATATAA-GTAACATAT-AACGTTGTGTAAGTTTAAGGTGTACAA
C-ATAATGATTCAATACATTCAT--ATTTCAGTATAGTTGTCAGTGCAGTCTTGGCAA----------------------
--------------------------------------------------------------------------------
-----------------------GCACCTCTG-TCAGGTC---------------------------------------A
CATGATTATCATTTTTT---CTAGTGGTGAGAACGATTAAGATCTATTCT-GTTAGCATATTTAATGTTTACAATACAGT
TTTGCTGTGTAAAATCACTGCACTGTGTACTAGATCTCCA--------------AGGCTA----TGGGATTCTT---GAA
ACTTCTCAGTTGGTAGGAAGGAATGGTTTAGAGATTTAAAGTTAAGG
>Sus_scrofa
AGAATTATTTTATTTTGGCTTGATTCCAAGCATTCTGC-TTATCCACACCC---AGACTATGGGATTTTT----------
-------------------TTTTTT----AATTGGGATATAA-TTGATAAAA-ATCTTGGTGTCAGTTTAAGGCATACC-
T-GTATTGATGGGATACATTTAT--GTTGCAGTATGCTTGCTATTGTAGTGTTAGCTACGTAATTTTTCTAGGAGAGTTT
CTGCTGTGGCTCAGTGGGATTGGTGCTGTCTCTGCAGCACCAGGACGCTGGTTCAATCCCTGGCCCAGCACAGTGGGTTA
AAGGATGTGGTGTTGCTGCAGCTGCGGCTCAGATCTGATCCCTGGCCCAGGAATTCCATATGCTGCAGGGCAGCCGAAAA
AATATATATATTTTTTTCCCCTAGGAGTGGGAACAATTAAGATCTATTCT-CCTAGCAAGGTTAATGTTTATAATACAGA
TTCGTTATCTATAATCACTGAACTGTGTGTTAGATTTCCA--------------AGGCGG----TGGGATTCTT---GAG
ACTTCTAAATTGGTAGGAAGGAACGGTTTAAAAGTCTGAAGCTAGGG
>Bos_taurus
GGAATTATTTTATTTTGGCTTGATTCCCAGAATTCTGC-TTATTTACACCC---AGACCTTGGAGTTCTT----------
----------------T-TTTGTTT---AAATTGAGATATAA-TCAACAGAA-AGCATTCTAGAAGTTTAAGGTGTGCCA
T-A-------TTGATACATTTAT--ATTGCAATATGATTGCCATGGTAGTGTTAGCTA----------------------
--------------------------------------------------------------------------------
-----------------------ACAA-----------------------------------------------------
---AATTACCAATTTTT---TATGTGGTGAAAACAAT-----TCTGTTTT-CTTAGCANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------------NNNNNN----NNNNNNNNNN---NNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>Equus_caballus
AGTATTATTTTATTTTGGCTTCATTCCCAGCATTCTGT-TTATCCACACTC---AGACCACTGGGGTCTT----------
----------------CCCTTTTTT----AACTGAGATATAATTTGACATAT-AACATTGTGTAAACTTAAGATGTACAA
C-ATATTGATTTGATACATGTAT--ATTGCAATATGATTGTCTTTGTAGCATTAGCTA----------------------
--------------------------------------------------------------------------------
-----------------------ACACCTCCG--TTCGTC---------------------------------------A
CCTAATAATCATTTCTT---CTAGTGGTGGAAACAATTAAAATCTATTCT-CTTAGCAAGTTTAATGTATACGGTCCAGT
TTTGTCGTCTATAATCACTGTACTGTGTATTAGATCTCCA--------------AGGCCA----TGGGATGCTT---GAA
ACTTCTAAATTGGTAGGAAGGAATGGTTTAGAGTTCTGATGTTGAGG
>Ceratotherium_simum
AGTATTATTTTATTTTGGCTTCATTCCCAGAATTCTGC-TTTTCCACACTC---AGGCCATGGGATTCTT----------
----------------CCTTTTTTT----AACTGAGATGTAA-TTGACATAT-AACATTGTGTAAGTTTAACATGTAGAA
C-ACATTGATTTGATACATTGAT--ACTGCAACATGATTGCCATTGTAGCTTTAGCTA----------------------
--------------------------------------------------------------------------------
-----------------------ACACCTCTG-TTTTGTC---------------------------------------A
CATGATTATCATTTCTT---CTAGTGGTGGGAACAATTAAGATCTATTCT-CTTAGCAAGTTGAATGTTTATAATACAGT
TTTGTTGTCTATAATCACTGTACTGTGTATTAGATCTCCA--------------AGGCCA----TGGGATTCTT---GAA
ACTTCTAAATTGGTAGGAAGGAATGATTTAGAGGTCTGAAGTGGAGG
>Pteronotus_parnellii
AGTATTACTTCATTTTGGCTGGATCCCTAGAATCCTGC-TTGTCCGCATGC---TGGCTGCGAGACTGTT----------
-------TTTTGTTTTTTTTTGTTTTTTACATTGATGTATAA-CTGACCTTT-AACACCGTGTAAGTTTAACCTAT----
-------GACCTGATACATTTAT--GCAGTGATAGGATGGCCATTGTAAT----GCTA----------------------
--------------------------------------------------------------------------------
-----------------------ACACCTCTG-TCGTTTC---------------------------------------A
C---AGCATTATTTGTT---CTCAGGGTGGGAACAGTAAACATCTATCC--CTTAGCAAGTTTTGCGTTTATAATACTGT
CTTGTTGTTTGTAACTATTGTACTTTGTATGA-ACCTCCA--------------AGGCCA----TGGGTTCCTG---GAA
ACTTCTAAAGTGGTAGGAATGACCA----AGAGGTCTGAAGTTGAGG
>Rousettus_aegyptiacus
AGGATTGTTTTGTTTTGGCTCGATGCCCGGCATTCTGC-TCATCCACATGC---AGGCCGCGGGACTCCT----------
-------C-----------ATTTTA----AACACGGGCGTATTTT----TATTGACGTCGCGTGCGTTCGCGGTAGGCGA
TGGCATCGATCGGACACACTGAT--ACGGCGGCATGGTTGCCAGCGGAGCGTCAGCGG----------------------
--------------------------------------------------------------------------------
-----------------------ACACCTCCG-TCACGCC---------------------------------------G
CGTGACCATCGTCATTCCTTCTCGCGGTAGCAACAGTTAACATCCCTCCT-CTTAGCAAGTTTCGCGGTTACGATCCCGT
TTGGCTGCCTGCGATCGTCGCGCTGCGCCGTAGATCTCCA--------------AGGCCGTGCACGGGATTCTT---GAA
ACTCCTGGAGTGGCGGAAAGGAATGGTGGAGAGGTTCGAAGTTCAGG
>Condylura_cristata
GGTATTATTTTATTTTGGCTGAATTCCCAGTATTCTGC-TTCCCCACACCC---AAGCCATGGGATTCTT----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------GAA
AATTCTCAATTGGTAGGAAGGAGTGGTTGAAAGAACTGCA-TTGGGG
>Erinaceus_europaeus
AGTCTTACTTCCCTTTGGCCAGACTCCCAGCCTTCTGTGTCCCCCACGCCC---AGACCCTGGGATTCTT----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------GAA
ACTTCTCAGCTGGCAGGAGGAGA------GGAGCTCGGAAGCCCAGG
>Homo_sapiens
AGTATTATTTTATTTTTGCCTGATTCCCAGCATTCTGC-CTATCCACACTC---AGGCCATGAGGTCCTT----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------GAA
ACTTCTACATAGGAAGGAAGGAAGAGTTTAGAAGGCTGCAGTTGAGG



Dog364_LINE

>L1MA9_3END
------------------------------------------------------------------------------GT
GGTAATCATTTCAC-AAT-GTATACGTAT----ATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTG
TCAATTATACCTCAATAAAGCTGGAAAAA---------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------
>Canis_familiaris
AAAGAATACAGAGCATAGGT----ATGCAGATTCCTCTTTGTATTTTATTT-AAT---AGAAAATC-TGTCCCAA-----
----TCCTTTTCAC-AAT-ATATATATGTATACATCAAATCATCACATTGTACACTTTGAATATCTTACTACTTTAGTTG
TCAATTACACCTCAATAAAGCAAGAAAG----------------------------------------------------
-AAAGGAAGAA---AGAAAATTAT-------ATCCCAA---AC----CAAAGACTTGTC-ATAAATCTTG----------
---TATAAATCAACTTTTGAAC------------------TTCAAAATA
>Felis_catus
AAAGGAGAGAGAGCACAGGTGTGCATGCAGATTCTCCTGTGTT---------AAT---AGAAAATTATGTCCCAA-----
----CCCCTTTCAC-AAG-GGATATATAG----ACCAAATCATCACAACGTACACTTTAAATACCTTACAATTGTACCTG
TCAACAATATCTCAATACAGCTGAAAAA----------------AATCCTAGGAATTAAACTCTTAAAAAGAAAAAAAAA
AAAAGGAAGAA---AGAAAATTATG-ATTACATCCCAA---AC----CAAAGACTGGTC-TTAAATCTTA----------
---TGTAAATCACCCTTTGAAC------------------TTCAAAATA
>Manis_pentadactyla
CAAGGATCCAGAGCACAC------ATGCAGATTCTCATTTGTGTTTTCATT-AAT---AGAAAGTCATGTCCCAG-----
----TCC-TTTCACAAAT-CTGTACATAT----ATCAAACCATCAACTTATATACTTTAAGTATCTTA------------
----------------------GGGGGG----------------AACCCTAAGACTTAAATTCTT-------------AA
AATATATATAT---ATATATATATATATGATGTCCCAA---AT----CAAAGTCTACTC-TCTCACCTCACA-------T
ATCCATAAATGAACTTTCAAAC------------------TTCAAAATA
>Sus_scrofa
CCAGGATTCAGAGCAGAGCT----GTGCAGATTCTCTTCTGTTTTTTCTTTAAAT---AGAAAATCAGGTCTTAA-----
----TCCTTTTCAC-AAT-GTCAACCTGT----AT-----CATCACAATGTACACTTTAAATGCCTCACAATT----TTG
TCAATTTTATCTCAA-GAAGCTAAAAAAAAAACTAAAAAACCCTAGCCCTAGGATTTAAACTCAT---------------
--------------AAAAAA-----------GTTACAC---AT----CAAAGACTCCTC-CTATATCTCACA-------T
ATCTATA---CAACTTCTGAAC------------------TTCAACACA
>Tursiops_truncatus
CAAGGATTCAGAGCAGAGGT----ATGCTGAATCTCTTCTGTATTTT-----AAT---AG---ATTATGTCCTAA-----
----TCCTTTTCAC-AAT-GTACACCTAT----ATCAAATCATCACACTGTACACTACGAATGCCTCACAATTCTATTTG
TCAATTATATGTCAA-AAAGCTAAAAAA-----------CAAAAAACCCTAGGATTTAAACTCAC-------------TA
AAAAAAAAA-----AAAAACTTAT-------GTCCCAA---ACCAAACAAAGACTTCTC-TTATATCCCATACCCCAGTT
ATCTATAAATCAACTTTTAAAC------------------TTCAAAACA
>Equus_caballus
CAAGGTCATGGAGCGGATGT----CTACGGATGGTCATTTGTGTTTTCTTT-AAT---AGGAAATTATGTCCCAA-----
----TCCTTTTCAC-AATGGTATACATAT----ATCACGTCATCATGTTGTATGCT-TAAATACCTTACAATTCTATTTG
CCAGTTATACCTCAATAAAGCTGAGAAA---------------AAAATGTAAGATTTAAACTCTT---------------
--------------AAAAAATTAT-------ATTCTAA---AC----CAAAGAA--CTC-TTATATCTCACA-------T
ACCTATAAATCAACTTTCGAAG------------------TTCAAAACA
>Ceratotherium_simum
AAGGGCCATGGAGCAGACGT----CTGCAGATTATCATTTGTATTTTCTTT-AAT---AAAAAATTATGTCCCAA-----
----TCCTTTTTAC-AGT-GTATACATAT----ATCAAATCATCACATTTTACACT-TAAACACCTTATAATTTTATTTG
CCAATTGTACCTCAATAAAGCTGAAAAA----------------AAACTTAAGATTTAAACT----------------CA
AA------------AAAAAATTAT-------GTTCCAA---AT----CAAAAAGTTCTC-TTATATCTCACA-------T
ATCTATAAATCAAATTT-GAAG------------------TTCAAAATA
>Myotis_myotis
CAAGAATACGGAGCAGATAT----AGGCAGATGCTCTTCAGTGTTTTCCTT-CAT---GG-AAATTATGTCCCAA-----
----TCCTTTTCAT-AGT--TATACAAAT----ATCAAATCATTATGTTGTACACTTTAAATGCCTTACAAGTCTATTTG
TCAATTCTATCTCAATAAAACTGAGGGG---------------AAACCATAGAATTAAAGCTCAT-------------TT
AAAAAGAAA-----ATAAAATTAT-------GTCCCAA---AC----CAAAGATTTTT------ATCTCACA-------T
ATCTGTAAATCAACTTTCAAAC------------------TTCAAA-CA
>Rousettus_aegyptiacus
NNNNNNNNNNNNNNNNNNNNNNNNNNNCAGATGTTCTTTTGTGATTT-----AAT---AGAAAATTATGTCTCAA-----
----TCCTTTTTAC-AGT-GTATATATAT----ATGAACTCATCATGCTGTGCACTTTAAATACCTTACTATTTTATTTG
CCAATTATATTGCAATGTAGCTGGGGGT--TGGGGGGGGGGAAGTACTGCAAAATTTAAGATCAT-------------TA
AAAAAGAAAAA---AGAAAATTAT-------GTCCCAA---AT----CAAAGACTTCTT-TTATACCTCACA-------T
ACCTATAA-----CTTTTGAAT------------------TTCAAAATA
>Condylura_cristata
CAAGGACACAGAGCAGAATT----ACGCA-ATTCTCATCTATGTTTTCTTC--AT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------AAAAAATCAT-------GTCCCAA---AA----CAGTAACTTCTCTTTACATCTTGCT-------T
TGCTATCAATCA-CCTTTAAGC------------------TTCAAAACA
>Uropsilus_gracilis
AAAGGACAGAGAAGAGATGT----ATGCAAATTCTCATCCATTTCTTCTTC--AT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------AGAAAATTAT-------GTCCCAA---AT----TCATGCCTTCTC-TTACATCTTACT-------T
AGCCACCCATCA-CCTTTAAAT------------------TTCAAAACT
>Homo_sapiens
CGCAGATGCAGAGCAGATGT----ATGCAGGTTCTCACTTGTATTTTCTTT-AAC-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------AGAGAATTGT-------GTCCCAA---AC----CA--GACTTCTC-TTATATCTCACC-------T
ATCTGAAAACGAACTTTTGAACTTAGAAAAAACTAACTTTTTCAAGATA



Dog366_LINE

>L1_CARN7_3END
--------------------------------------------------------------------------------
-----------TTGTGGTGATCACTTCAC----------------------------------------------AATGT
ATACAAATGTCG----------------------AA-TCA-CTATGTTGTACACCTGAAACTAATATAACATTGTATGTC
AATTATA-CTCAAATAAAAAAA----------------------------------------------------------
--------------------
>Canis_familiaris
AAGTCA-CTGTCCAACTTACTTG-TCCAAGCTTCAGGA-----------TGTTTTT----CATTTAT---AAAAGCATTT
-----TAA----------------TTCAC----------------------------------------------AATAT
ATACAAGTACCT----------------------AA-TTC-TCATGCTGTACGCCTGAAACTAATATAATGTTACACATC
AATCATATCTCAA-TAA--------A-AAAGCATTTAA---TCATGAAAACATTTAAGGTGCTTATTCATTTTACCACCA
AAAAAAAAAAAACGTTCTTA
>Felis_catus
AAGTCA-TTGTCCAACTTACTTG-TCCAGGCTTCAGGG-----------TTTTTC-----CACTTAT---AAAAGCATTT
------AA----------------TTCACACA-------------------------------------------AAAAA
ATACAAATATCT----------------------AATTCA-TTACGTTACACACCTGAAACTAATATAATGTTATATGTC
AATGATATCTCAA-TAA--------A-AAAGCACTTAA---TCATGAAAATGTTTAAGGTGCTTATTCATCTTATCAC--
-------AAAAATGTTCATA
>Manis_javanica
AAGTCG-TTGTCCAGTTTCCTTTCTCCAGACTTGAGGA-----------TTTTTTT----CATTTAT---GAAAGCA-TT
-----TAA----------------TTCACTATGCATATGTGTGTGTGTATATATATATATATACACACACACACACATAT
ACACATGTATATATATATATATATATATATGTAGAA-TCA-TTATGCTGTGTACCTGAAACTAACAT--------ATGTC
AATTAAATCCAAA-GAA--------AGGAAGCATTTTA---TCATGAAAATACTTAAGGTGCTTATTCATTTTACC----
--------AAAAAATTATCA
>Sus_scrofa
AAGTCA-TTGCCCAATTTACTTG-TCCAGGCTTTAGAG-----------TTTTTT-----CATTCAT---AAAAGCACTT
AATTCTAA----------------TTTGC----------------------------------------------AGCAT
ATACAAACATTG----------------------AA-TCA-TTATGTTGTACACCTGAAACTAATGTTATGTTATATGTC
AATTATTTGTCAAAATA--------A-AAAGGATTTAA---TCATGAAAATATTTAAGGTGCTTTTCCATTTTAACAT--
--------AAAATGTTCTTA
>Bos_taurus
AAGTCA-TTGCCCAATTTACTTG-TCCAGGCTTCAGGC-----------TTTCTT-----CATTT-T---AAAGGCATTT
ACTTCTGA----------------TTTGC----------------------------------------------AACAT
ATATAAACATCA----------------------AA-TCA-TTATGTTGCATACCTGAAACTAATATAATGG-ATATATC
AATTATATCTCAATATA--------A-AAATGACTTAC---TCATGAAAATGTTTAAGGTGCTTTTTCATTTTAACAC--
---------AAAAGGTTTTA
>Equus_caballus
AAGTCA-TTGCCCAATTTACTTT-CCCAGGCGTCAAGG-----------GTTTTT-----CATTTAT---AAAAGCGTTT
------AA----------------TTTAC-----------------------------------------------AGAT
CTACAAATATCA----------------------AA-TCA-CGATGTTAGACACCTGAAACTAATAAAATGTTATATGTC
AATTATATTTTAATTAA--------A-AAAGCATTTAA---TCATGAAAATACTTAAGGTGCTTATTCATTGTACCAT--
-------AAAAATGTTCTTA
>Ceratotherium_simum
AAGTCA-TTGCCCAATTTACTTT-CCCAGGCTTCAGAG-----------GTTTTTT----CATTTAC---AAAAGCATTT
------AA----------------TTCGC----------------------------------------------AGTAA
ATACAAATATCA----------------------AA-TCATTTATGTTATACACCTGAAACTAATATAATGT--TACGTC
AATTATATCTGAATTAA--------G-AAAACATTTAA---TCATGAAAATATTTAAGGTGCTTATTCATTTTACCAT--
-------ACAAATGTTCTTA
>Myotis_myotis
AAGTCATTTGAACAACGTATTTG-TCCTGACTTCAGGA-----------TTTTTTT----CATTTAT---GAAAGCATTT
------AA----------------TTTGT----------------------------------------------GAAAT
ATACAAACATAG----------------------AA-TCA-TTATGTTACACAGTTAAATCTAATACAATGTTATAT---
-ATTATATCTCAGTTAA--------A-AAAGGAATTAA---TTGGGATAATATTTAAGGTGCTTATTCATTTTGCCAT--
-------TAAAATGTT--TA
>Rousettus_aegyptiacus
AAGTCA-TTGACCAATTTACTTG-TCCAGGCTTCAGGA-----------TTTTTTTTTTCCATCTAT---AAAAGCATTT
------AA----------------CTTAC----------------------------------------------AATAC
ATACAAATATAG----------------------AA-TCA-TTATGTTACACAGCTGAATCTAAGATATTGTTATATGTC
AATTATATCCCAA-TGA--------A-CAAACATTTCA---TCATGAAAATATTTAAGGTGCTTATTCGTTTTACTAT--
-------AAAAATGTTCTTA
>Condylura_cristata
AAGTCG-TTGCCCATTTTATATG-TC-------TAGTG-----------TTTCTTT----CATTTAT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------A-AAAGCATTTCA---TCATGAAAATATTCAAGGTGTTTGCTCATTTAACCAT--
-------AGAAATTAACTTG
>Sorex_araneus
ATGTAA-TTGCCCAATTAACTTG-AT-GAGCTCTAGGATAT--------TTTCTTTTATTTTTTTAT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------A-AAAGCATTTAA---TTATGAAAATATTTAAGATGTTTATTTTGCTTTCTAT--
-------AAATGTATTCTGA
>Homo_sapiens
AAGTCA-TTGTCCAACTTACCTG-TCCAGGGACCAGGTTTTTTGTTTTTTGGTTTTTGTTCATTTAA-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------A-AAAGCTTTTAA---GCATGAAAATCTTT-AGATGTTTATTCATTCTACCAT--
-------AAAAATGTCATCA



Dog367_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
-------TTTTTCCAGCTTTTTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTAC
AACGTGATGTTTTGATATACG--TATACATTGT-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----GAAATGATTACCACAATCAAG-CTAATTAACATATCCATCACCTCACATAGTTACCA--TTTTTTTGTGTGTGGT
GAGAACACTTAAGATCTACTC-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------TCTTAGCAAATTTCAAGTATACAATACAGTATTATTAA
CTATAGTCACCATGCTGTACATT----AGATCTCCAGAACTTATTCATCCTGCATAACTGAAACTTTGTACCCTTTGACC
AACATCTCC-----------------------------------------------------------------------
----
>Canis_familiaris
TTTAAACAAAGGAATTCAATTACCTGAT-CTTTTTATCAAA------ACGTAG----AAAATA---TTAAATGTCCTTAT
TTTT--------------------------TTAATTCAGAAATAATTGACATGTAACA-TTGTATAAGTTTCCGGTGCAC
AA-ACACGGATTTGATATTTG--TATATATTGC-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----AAAAACGGTCACCAGGATAAGT-CTACTTAAC--ATCTATCAACACACATAGTTAC-AACTTTTTTTCCTTGTGAT
GAGAACTTGTAAGATCTACTC-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------TCCTAGGAACTTTCAAATATACAATAT--TTGTATTAA
CTACAGTCACTAGGCCACACCTT----TTATCCCCAGAACGTATTTAT--TTTATAACTGGAAGTGTATACCTTTT----
------------GTAAATGTCCTCATTTTT---GA--GCTCTAAATCAGTGTGAGTTACTCAGTGTTCATGAATTATTT-
GGCA
>Felis_catus
TTTGAA----GAAACTCAATTACCTGAT-ATTTTTATAAAA------ATTTTT----TAACAA---TTAAATGTCCTCAT
TTTT-------------------------TTAAATCAAGAAATAACTGACATGTAACA-TTGTA--AGTTTTGAGTATAC
AACACAATGATGCAATATTTG--TATATATTGC-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AAAATGATTACCACGATTAAGTCTAGTTAAC--ATCCATCACCACACAGAGCTACAAA---TTTTTTCTTGTGAT
GAGAACTTTTAAGATCTACTCTCTCGGGCGGGGGCCGGGGGGGGGGGGGGGGGGGGGGGGGTTGCGCCTGTGTGGCTCAA
GCATCTGACTTCAGTCAGGTCACGAACTCGAGGTTCGTGGGTTCAGGCCCTGCGTCAGGCTTTGTGCTGACAGCTCAGAG
CCTGGAGCCTGTTTCGGATTCTGTGCCTCCCTCTGTCTCTGCCTCTCCCTTGCTCGCACTCTGTCTCTCTCTGTCTCTAT
CTCTCAAAAATAAACATTAAAAAAAAAAAAAAAGATCTCTCTTAGGAACTTTCTTTTTTAAAAAAAATTTTTTTTCAACG
TTTATTTATTTTTGGGGGGACAGAAAGAGACAGAGCATGAACGGGAGAGGGCCAGAGAGAGAGGGAGACACAGAATCGGA
AACAGGCTCCAGGCTCTGAGCCATCAGCCCAGAGCCTGACGCGGGGCTCGAACTCCCGGACCGCGAGATCGTGACCTGGC
TGAAGTCGGACGCTTAACCGACTGCGCCACCCAGGCGCCCCATCTTAGGAACTTTCAAATACACAATAT-----------
----AATGACCAGCCTGTACCTT----AAATCCCCAGGACTTAGTTAT--TTTATAACTGGAGGTTTACACCTTTT----
------------GTAAATATCCTCATCTTT---AAAAAGTCTA----AGCATGAGTTACTCAGTGTTCATAAGTTATTT-
GGCC
>Manis_pentadactyla
TTTGAACACAGGAATGCAATTGCCTCAT-CCTTTTATTAAA------ACTAAA----GAA-AA---TTAA-TGTTCTCAT
TTTA------------------------TTTTAGAT---------CTGACATATAACA-TTGTATAAGTTTTAGGTATAC
AAC---ATGATTCAATATTTGTATATATATTGC-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AAAATGATCACCACAGTTAGT-TTAGTTAAC--ATCCATCACCACCCA--------AATTCTTTTTCTTTGTGAT
GAGAGCTTTTA---------T-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------TCTCAGAAGATATCAACTATTCAATGCAGTATTATTAA
CTATAGTTACCG---------TT----AAATCCCCAGGACTTACTTAT--TTTGTAGCTTGAAGTTTGTAGCTTTC----
------------GTAAATGTCCTCATTTTT---GAAAAGCCTGCATCACCATGAGTTACTCAGCGCTCATAAGCTATTT-
GCCA
>Sus_scrofa
TTTGAACAAAGGAGTTCAGTTGCTTGAT-CTTTTTATCT--------ATCTTT----AAAAAA-----AAATGCCCCCAT
TTTT------------------------TTTTAATTGAGATATCATTGACACGTAACA-TTGTATAGGTTTTGGTTGTAT
AAC---ATGATTCTATGTGTG--TGTATATTGC-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----AAAA----TGATCACAAGAAAT-CTAAATAAC--ATCCATCACCCGGAATAGTTAGAA---CTTTTTTCTTGTGTC
AAGAACTTTTAAGATCTATTC-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------TTATAGTAACTTTCCAATATACAGTACAGTAATATTAA
CAATAGTCACCATGTTGTACATT----GTATCCCCAGTACTTATTTATAGTTTATAACTGGAAGTTTGTATCTTTT----
------------GTAAGGGTCCTAATT-TT---GAGAAGCCTAAATCAGCATGAGTTACTCAG-GCTTATAAGCTAGTT-
GGCA
>Tursiops_truncatus
TTTGAACAAAGGAATTTAGTTGCTTGAT-CTTTTTATTAAA------TCTTTT--AAAAAAAA---TTAAATGTCCTTAT
TTTT-------------------------AAAACCTGAGATATAATTGACATATAACA-TTGTATAAGTTTTGGGTGTAT
AAC---ACGATTCCATATTTG--TATATATTGC-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AAAGTGCTCACCACTGGAAAT-CTAATTAAC--ATCTATCACCACACATAGTTAT--ACTATTTTTTCTTGTGAT
GAGAACTTTTAAGATCTATTC-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------TTTTAGCAATTTTCAAATACACAATATAGTATTATTAA
CTCTAGTCACCATGTTGTACATT----ACATCCCCAGGACTTACTTATATTTTATAACTGGAAGTTTGCACCTTTT----
------------GTAAGTGTCCTATTTTTG---GAAAAGCCTAAATCAGCATGAGTTACTCAGTGCTCACAAGCTATTT-
GGCA
>Equus_caballus
TTTGAACAAAGGAATTCAATTGCCTGAT-CTTGTCATCAAA------ACTTAA--AAAAAAAA---TTAAATGTC---AT
TTTT-------------------------TAAACTTGAGATATAATTGACATATGACA-CCGTATAAATTTCAGGTGTAC
AACAAAACAATTTGATATTTG--TATATACAGTCATGTGTCGCTTAACAATGAGGATGCATTCTAAGAAATGCATCATTA
GGCAATTTCCTCATTGTGTGAACATCATAGAGTGTACTTACAGAAGCTGAGATGTTGTAGCCCACTACA-CACCAGGCTA
TGTGGTACTAATGTTATGGAACCTCTGTCGTTCATATGGTCTATTGTTGACCGAAACGTTATTAT-----------GTGG
CACACAAAGTGATCACCACACTGAGT-CTAGTTAAC--ATCCATCACAACATATAGTTAC-AATTTTTTTTTCTTGTGAT
GAGAACTTTTAAGATCCACTC-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------TCTTAGAAACTTTCAAATATACAATACAGTCTTA-CAA
C-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>Ceratotherium_simum
TTCGAACAAAGGAATTCAATTGCCTGAT-CTTTTTATCAAA------ATTTAA---AATAAAA---TTAAATGTCCTCAT
TTTT-------------------------TTAAATTGAGATATAATTGATATATAACA-TTGTATAAGTTTCAGGTGTAC
AACATAATAATTTGATATTTG--TATATACAGTCACGCGTCACTTAACGATG-GGATATGTTCTAAGAAATGTGTCATTA
GGC----------------------GTTAGAGTGTACTTACACAAACCTAAATGGTGTAACCCACTACACACCTAGGCTG
TACAGTACT--AATCTTAGGACCACTGTCATAGATGCAGTCTATCATTGACCAAAATGTGGTTATGCGGCGCATGACTAC
ATTGCAAAATGTGCACCACACTTAGT-CTAGTTAAC--ATCCATCATCACATATAGTTACAAATTCTTTTTAATTGTGAT
GAGAACTTTTAAGATCTACTC-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------TGTTAGCAACTTCCATATATACAATACAATNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----
------------NNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNN
>Myotis_myotis
TTTGAACAAAGGAATTCAATTGCCTGATACTTTTTATCAAA------ACTTTT----AAAAAA---TTAAATGTCTTCAT
TTTT--------------------------TAAATTGAGAT---------ATATGACA-CTGTATAAGTTTCAGGTATAC
AAC--AAAAATACAATATTTG--TATGTTGTGT-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AAAAGGATCACCACAATGAGT-TCAGTTAGC--ACTCATTACCACACATGCACAT-----TTTTTTTCTTGTGAT
GAGAACTTTAAAGATCTACTC-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------TCTCAGAAACTTTCAAATGTACGATACAGGATTATTAA
CTATAGTCACCATGCTGTACGTTAATGACATCT-CAGGACTTACTTAT--TTTATAACTGGAAGTTTGTACTTT-T----
------------GTACATGTCCTCATTTTT---GAAAAGCCTAAATCAGCATGTGTTTCACAGTACTCATACGCCATTT-
GGCA
>Rousettus_aegyptiacus
TTTGAACGAAGAAATTCAATTGCCTAAC-CCTTTTATCAAA-AAAAAATTTTGT-------AA---TTAATTGTCT--AT
TTTT--------------------------TAAATTAAGATATTATTGTTATATAACG-TTGTATAAATTTCAGGTGTAC
AACATAATGATTTGGTATTTGT-GATATTT--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------GT-CTAATTACC--ATCCACTATCACACATAGGTACAAA--TTTTTTTCTTGTGAT
GAGAA-GTTTAAAATCT---C-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------TCTTAGAAACTTTCAAATATACAATACAGTATTATTAA
CTATAGTCACCATG-TGTATATTAATTACATCTTCAGGTCTTACTTGT--TTTATAACTGGAAGCTTATACCTTTT----
------------GTAAATGTCCTTATTTAT---AAAAAGCTTAAATCAGCATGAGTTACATAGTACTTATAAGCCATTTG
GGCA
>Condylura_cristata
TTTGAACACAGGAATTCAACTTTTTGGATCCTTTTATCAAATTAAAAATTTACTTTAAAAAAT---GCAAATGTTCTTAT
TTTT----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------G-AAAGCTTAAATCAGCATGAGTTATTCAGTTCTCATAAACT-----
GGCA
>Solenodon_paradoxus
TTTGAACAAAG-AATTCAAGTATCT----------ATCAGAA-----AGTATT----AAAAAT---TTAAATGACTTCAC
TTTT----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------GAAAAGCCTAAGTCTGTATGAGTTACTCAGTGCTCATAAACGAT---
TTGA
>Homo_sapiens
TTTGAACAAAAGAATTCAATGACCTGAT-CTTTTTAACAAA------ATT-------AAAAAT---TTAAATGTCCTCAT
TTTT----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------GAAAAACCTA-------------AACTCAGTGCTCATAGGTTATTT-
GGCA



Dog368_LINE

>L1_CARN7_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------TTTTTTTATTTGAGTATAATTGACATACAATGTTATATTAGTTTCAGGTGTACAACAT-AGTGATT
CGACATTT-GTATACATTGTGAAGTGATCACCA----------CAATAA-GTCTAG-TTACCATCTGTCACCATACAANG
TTANTACAATATTATTGACTATATT-------------------------------------------------------
----------------
>Canis_familiaris
TTAGTTTTTACGCTGGCAGAATTAC-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------AGTATTTCATGAGAAAATTCT-----
------------------TTGG---TTCCCTAAATTATATGT------------------------GTGTGTTTATGGGT
TGTTCAGGATAAATTGTATGTGTGTGTTTATAATGGACATATTACATTATAACAATTTCAGTTGTATAATGT-AATGATT
CAATATTTAATATGTATTGTGAAATGATCACCA----------TAACAG-ATCTAG-TTAACATCTATCACCAAAAA---
TACTTAC---TTTTTTTTT---------TTGCTTAAATTAGTTTT---AATTATGTATTCAACCT----------GCAGA
TAGAAATATATTTTGT
>Felis_catus
CTAGTTTTTACACTGGCAAAATTAG-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------AGCATTTCATGAGATAAACCT-----
------------------GTGG---TTCCTTAAATTTTGTGT----------------GTGTGTGTGT-----------T
AACATGCCTCTTTTTTTTTAAGTTGAGGTACAATGGACATACAACATTATAACAATTTCAGTTGTACAACAT-AATAATT
T-ACATTT-ATATGTATTTTGAAATGATTACCA----------CAACAA-ATCTAG-TT-----------CCAAGCA---
TATTTAC-ATTTTTTT------------TTGCCTAAATTGGTTTT---AATTGTGTCTTCAAACCAGCAGCTTTGACAGT
TAGAAATGTATTTTGT
>Manis_pentadactyla
CAGGTTTTTCCACTATCAAAATTAG-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------AGTGTTTAA--AAGTAAATAT-----
------------------TTTG---TTCCCTAAATTGTGCTT-----------------TTTATAGCC------------
------------TTTTCTTTAATTGAGGTACAATTGACA-ATAACATTATATTAGTTTGAGTTGTACAACAT-AATTATT
CAGTATTT-GTATATATTGTGAAATGATCACCA----------CAATAA-GTCTAG--TAACAACCATTACCAAAC----
-ATTTGCAATTTTTTCTTT---------TCACCTAGATTGGTTTT---AATTGCATATTCAGACCAGCAGCACTGGAAGA
CGGACATGTATTTTCG
>Sus_scrofa
CTAGCTTTTCTGCTGGCAAAATTAG-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------TGTTTCATGAAGTAAAACT-----
------------------C--A---TTTCCTAAATTATGTTT---TTGGCTTTTTTTTTTTAACATGC------------
---TTTCTGTTTTTGTTTTTTATTGAAGTATAATCGACA-----CATTACATTAGTTTCAGGTGTACAACAT-AATGATT
TGATCACC---ACAAATTTTATAGTTAACAATAGTCTAATAGTTAACAA-GTCTAG-TTAAGATCTGTCAAGA-------
CATTCACAACTTTTTTT-----------TACCCTAGATGT-TTTT---AATTGTATATGCAGACCAGCAT-TTTGGAATA
CAGAAATGTGTTTTGG
>Tursiops_truncatus
NNNNNNNNNNNNNNNNNNNNNNNNN-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------NNNNNNNNNNNNNNNNNNNNN-----
------------------NNNN---NNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNTGCTCG-------------
-------------TTATTTTTA-TGAGGTATAAT-GACAAAGTACATAGTA-------CAGGTGTACAACAT-AATGATT
TGATCACA-CAAAATGTCTAGTAACAGTACTTAGTCTAATAGGTAACAATGTCTTG--TTACATCT-TCAATGAACA---
TATT-ACAATT-----------------TTGGCT-AATTTGTTTT---AA-TGTATATTCAGACCAGCAG-TTTGGAAGA
TAGAAACATATTTCGG
>Equus_caballus
CCAGTTTTTCCACTGGCAAAATTAC-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------A-TATTTCATGAGGTAAATAT-----
------------------TTGG---TTCCAAAAACTGGTTTT-----------------TTAATACAC------------
------------CTTATTTTAATTGGGGTATAATAAACATATAACATTATGTTTGTTTCAGTTGTATGACAT-AATGATT
CAATATTT-GTATATATTGTGAAGTGATCACCA----------CAATAA-GTCTAG-TTAACATTCATGACCAAAC----
-ATTTAAATTTTTTTTT-----------TTGCCTAAATTGATTTT---AATTGCATATTCGGGCCAGCAGCTTTGGAAGC
TAGAAATGTATTTTTG
>Ceratotherium_simum
CTAGTTTTTCCACTGGTAACATTAG-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------AGTGTTTCATGAGGTAAACCT-----
------------------TTGG---TTCCCTAAACTGTTTTG----------------TTTTACATGC------------
-------------TTTTTTTTATTGAGGCATAATTGACATATAATATTATATTAGTTTAAGTTGTACAACATAAATTAGT
CAATATTT-GTACATATTTTGAAATGACCACCA----------CAATAA-GTCTAGTTTAATATCCATTACCAAACA---
TATTTACAATTTTTTT------------TTGCC-----------T---AATTGCACATTCAAACCAGCGGCTTTGGAAGC
TAGAAACGTATTTTGG
>Myotis_myotis
CTAG-TGTTCCACTGGCAAAATTAG-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------AGTGTTTCATAAGGTAAGCCT-----
------------------TTGA---TTTTCTAAATTGTTTGT----------------GTTTATGTGTGTGTGTGTGTTT
ACATGCCTTCATTTTCTTTTTATTGAGGTGTTATTGACATATAATATTGTATTAGATTTAATTATACAACAT-AATGATT
TGATATAT-GTATATATTGCAAAA-GATCATCA----------CAATAA-GTCTAA-TTAATATCAGTCCCCAAATA---
CTTTTACAAAATATTATTT---------TCCCCAAAATTGGTATT---AATTGCATATTTCAACTAGCAACTTTAGAAGA
TAGGAATGTATTTTGT
>Rousettus_aegyptiacus
NNNNNNNNNNNNNNNNNNNNNNNNN-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------NNNNNNNNNNNNNNNNNNNNN-----
------------------TTGA---CTACCTAA-----------------------------------------------
---CACCTTCATTTTCTTTTTATTGCAGTG-AATTTACATATATTGTTAT--TGATTTGAATTGTACAATAT-AATGAGT
CCATATTT-GCATATATTGCAAAATAATCA-------------CAATAA-GTTTAG-TTAATATCTGTCACCAAATT---
TATTTA----TATTTT------------TCTCC-ATATTGATTTT---AATTGCATATTTTGACCAGCAGCTTTAGAAGA
TAGAAATATATTTTGT
>Condylura_cristata
CAAGTTTTCCCACTGATAAAATTAG-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------AGTGTTTCATGAAATAAATCC-----
------------------TTGA---CTTCCTAATTTGTTTTT--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------AATTTTATGTTAAGAACAGTTTATTTTGAAAA
TAGAAATGCACTTTTG
>Sorex_araneus
TTTAGCTTTCCACAGACGAAATTAG-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------AATGTCTTGTAAAGTAAACCTAAATT
TATTTCTAATACTACATGTAGA---CCCCTAAATTTGTCTCT--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------AATAGTACATGGATAATTGCTACTTTGGAAGA
CAGAGATCTATTTTGG
>Homo_sapiens
CTAGTTTTTCCACTGGCAAAGATAGTGTGGGAAAGAGAGTTTCTGGGGTGCCAGGTGAGTTGGTCTCCCCTGTGTGAGAC
ACCCATGGGAAGCCATGGGCGGCCTCTGAGGAGAACAGTCTCCTTATTGCCTTCATGTCTTTATGCCCCTAGAGCATAAC
CGCTCAGCGGCGTTCCACAGGTTGCTGGGGGAGATAACACTCCCTTGAAGCAGGGAGTATAATCAAACATTTTGGCTCCT
CCTGAAACCCACTCCCACCCGTTTCAGTCCTGATAAGTTGAAGATCTTAGGTAGTTTAGACACACACCTTTGCTCAAGGA
AATTCACAGAAACCGCCACTGCTATACATCTTACCGAATGACTCACCAGTTCTCCTTCACTGATTAATCCTTTTCCTCAT
CCCTTCCTCCCCTTCCCATCTGCCCTAAGAACAAAGAGCTTGTAAACCAATAAGTTGGGTGGAGCCCGAGAGCTCTGGGC
CCTGAGCAAGGCTCCGAAGCTCAGGTCCCCTGGACATGCCTTTTAAACGCTTCTTCTGTCTCTTTCTAACTCCTTTGTCT
CCTCCGGACTCGGAGTACCCGCTGGGTGGTGTGGGGCTGGTTTCTCCAACAGATAGTGTTTCATCAAATAAACCC-----
-------------------TGC---TTCCCTAAATTGATTTT--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------AATTGCATATTCAAATCAGCAGCTTTCAAATA
TAGAAATGTATTTTGG



Dog375_LINE

>L1_CARN7_3END
--------------------------------------------------------------------TTTTTTTATTTG
AGTATAATTGACATACAATGTTATATTAGTTTCAGGTGTACAACATAGTGATTCGACATTTG-TATACA-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------TTGTGAAGTGATC----------------------------------------
---------------------------------------------------------------
>Canis_familiaris
TTTTCATGTGAAATTAGTAGCATATTGCTGCAGGTATGTAGGAAGGGCAT---ATGTACACTTTT-------AATATTTG
AATATAATTAAGTTATAAC---ATGTTTGTTACAGGTGTACAAGATAATGGCTCCATATTTG-TATATA-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------TTAC------------ATGTACATTTTT---AATTGAGCCAAA----------
GCAAACCCAGA---------AAGAAAGCAAAGCAAGGTTATACCTCTGTCTCCTTTGAGCATT
>Felis_catus
TCT---TGTGAAATCAATAGCATATTGCTGCAGGTATGGACAAACAGCAT---ATGTACATGTTT-------AAAATTTG
GATGTAATTAAGTTATAACATTATATTAGTTACAAGTG-ACAACATAATGATTCCATATTTG-TATATA-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------TTGC------------ATGTACACTTTT---AACTGAGCCAAA----------
GCGAACCCAGA---------AAGAAAGGAAATCAAAGTTATACCAATAACTCCTTCGAGCATT
>Manis_pentadactyla
TTTTACCATGAAATCAATAGCATGTTGTTGAAGGCATGTATGAATGGCTT---AC---TAC-------------------
-------------------------TTCATTTCAGGTGGGTACCATAATGGTTAAA-------TATACA-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------TTGC------------ATGTACACTCTT---AATTAAGCCAAA----------
---------------------GGAAATATTTCATAGGTTGGA----------------GCATT
>Sus_scrofa
TTTTATCAGTAAATCAATAGCATTTTGCTGAAGGTATGTAGGAGAGGCAT---AAGGACACTTTT----TTAAAAAATCA
GATATAGTTGACATAAAACATTATATTAGCTTCAGGTATGCAACATAATGATTCGACATTTGTTATTTA-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------GTAT------------GTGTACACTTTT---AATTGAGCCAAA----------
GCAAACCCAGA---------AAGAAAGCAAATATAATTTATAACGATGCCTCCTTCAAGCACT
>Bos_taurus
TTTTCTCATGAAATCAATTGCATATTGCTGAAGGTATATATGATTGGCAT---AAGTACACTTTT-----TAAAAATTTA
GATATAGTTGACATATAACATTATATTAGCTTTAGGTGTACAACAGATTGATTCAATACTTA-TATATATATAGTGCATT
ACACTTTTTAGAAGTGTGAGATATATATGTACAATATGATATGAGTTACAGGTGAACAACCCAGTGATTCACAAGTTTAA
AGGTTATATTCCATTTACCGTTATTATACAACACTGGCTGTGTTCTGTGTGGATAATATATCCTTGTAGCTTATTTTACA
CATGATAGCTTGTACTTCTCAACCCTCCACCCCTGTCTTGCCCCCCACCTTCCTCTCCCTACTGGGAACACTAGTTCGTT
CTTTATATCTGTGAGTCTGTTTCCTTTATATTATATTCACTGGTTTGTTTTATTTTTTAGATTTCACACATAAGTGATTC
ATTATAGTATTTGTCTTTCTCTGACTTATTTATTTATTTATTTTCTGACTTATTTAAATTAACATAATACCCTCAAAGTC
CATCTGTGTTACTGCAAAGGGAAAAATTTGC------------ATGGACACTTTT---AACTGAGTCAAA----------
GTAAACCCAGA---------AGGGAGGTAAACGTTGTTTATACCACTGCCTCCTTTGAACATT
>Equus_caballus
TTTTCTCATGAAATCAATAGCATATTGCTGAAGGCTTTTATTAACGGCAC---ATGTACACTTTT------TTAAATTTA
AATATAATTGACATATAACATTATATTAGTTTCAAGTTTATAACATAATGAATTGATATTTG-TATATA-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------CTGC------------ATGTACAGTTTT---AACTGAGGCAAA----------
GCAAACACAAA---------ACGAAAGCAAATATAGGTCATACTAGTATCTCCTTCAAGCATT
>Ceratotherium_simum
TTTTCTCGTGAAATCAATAGCATATTGCTGAAGATATGTACGAATGGCAT---ATGTACACATTT------TAAAATTTA
GATATAA---------------------------------------------TCGATATTTA-TATATA-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------TTGC------------TCATATACTTTA---AATTGAGCCAAATTGAGCAAAA
GCAAACCCAAA---------AGGAACACAAATATAGGTTATACTAGTGCCACGTTGGAGCATT
>Myotis_myotis
TTTTCTCATGAAATTAATAGCATATTGCTGAAGGTATGTATGATTAGCAT---GTGCATACTTTT-----TAAATGTTTA
TATAAAATTGACATATAAT-----ATTAGTTTCAAGTGTACAA-ATAACAATTCAGTATTTG-CATATG-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------TTGC------------ATGTACACTT-------CTGAGCCAAA----------
GAAAACCCAGA---------AAGAAAGCAAATATAGGTTGTACCAGTGCCTCCTTCAAGCATT
>Rousettus_aegyptiacus
TTTCCTCATGAAATAAATAGTGTATTGCTCAAGGTATGGATGAATGGCAT---AGGTATACTATT-----TTAAAATTTA
GATGTAATTGACATATAAC-----ATTAGTTTCAGATATACAACATAATGATTTGATATTTG-TATATC-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------TTGC------------ATGTACACTTTC---AACTGAGTCAAA----------
GCAAACCCAGAAAAAAAAACAAAAAAACAAATATAGGCTACACCAGTGCCTCCTCTAAGCATT
>Condylura_cristata
TTTTCTTATGAAATCAA-GTCATATCACAAAAGGTACATGCAGATCTCAC------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------ACATACACTTTT---CATTGAGTCAAA----------
ACAAACCTAGG----------GAAAAAAACATTTAAGTTATAGCATCTTCCCCTTGAAGCATT
>Solenodon_paradoxus
CCTTCTCATGAAAT-----TGATATCAT--------------ATTGGCCT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------ACATACACTTTT---AA-TGAGCCAAA----------
GCATACCCAGA---------AAGAAAGCACATATAAAATATGCCAGCTTCTCCCTTAAGCATT
>Homo_sapiens
CTTTCTCATGATACCA-TACCATATTGCTGAAGATAGGGGTGAATGGCAT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------ACATATACTTTT---AACTGAGTGAAA----------
ACAACTCCAGA---------AAGAAAGAAAACATAGGTTATATCTGTGCCTCCTTGGAGCATT



Dog376_LINE

>L1_CARN7_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------TTTTTTTATTTGAGTATAATTGACATACA--ATGTTATATTAGTTTCAGGTGTACAACATAGTGATT
CGACATTTGTATACATT---------------------------------------------------------------
------------------
>Canis_familiaris
GCAAAAGGGTCAAATG-AT-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------ACAAGTTGTCTGAAAAGTTAGATAACTAACAT---AGGATAAG-CT----
-ATTT-------------TTACTGATATATAATTGACATACAATATATTATATCAGTTTCAGGTATACAATATAACGATT
TGGCATTTGT----------AGGGATAAAC---------------------------------------------TGTTC
CTTAATGCGTTTTCAGAT
>Felis_catus
ACAAAAAGGTCAAATT-AAGGGGCGCCTGGGTGGCTTAGTTGGTCAAGCGTCTGACTCAATTTTGGCTCAGGTCATGATC
TCAGGGTTTATGAGTTCAAGCCCCATGTCAGGCTCTGGGCTGACAGTGTGGAACCTGCTTGGGATTCTCTCTCTCTCTCT
TTCTCTCTCTCTCATTCTCTCTTTCCCTCTCTCTCATTCTCTCTCTCTCTCAGAAAATAATAAACTTTTTTTTTAAAGTG
ACTTTTAAAAAAAGGGTCAGGGGCGCCTGGGTGGCACAGTCGGTTAAGCGTCCGACTTCAGCCAGGTCACGATCTCGCGG
TCCGGGAGTTTGAGCCCCGCGTCAGGCTCTGGGCTGATGGCTCAGAGCCTGGAGCCTGTTTCCGATTCTGTGTCTCCCTC
TCTCTCTGCCCCTCCCCCGTTCATGCTCTGTCTCTCTCTGTCCCAAAAAAATAAATAAACATTGGAAAAAAAATTTTTTT
TTAAAAAAAATTAAAAAAGGGTCAAATTAAACACGTTGTCTGTAAAGTTAGGTAACTAACAT---AGAGTAAG-CT----
-ATTT------------TTTTTTGAGATATAATTGACACGTA--ACATTATATTAGTTTCAGGTGTACAATATGATTATT
TGGCATTTGT----------AGGGATAAACTTATTTTTAA---ACAATATGTAAATTATA-TTTTGAAACAG-TATGTTC
CAGAATGTGTTTTCAGAT
>Manis_javanica
GCAAAAGGGTCAAATT-AT-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------ACAGGTTGTTTGCAAAGCTAGGTAACTAATAT---GGGATAAATATTATT
CTTTT-----------TTTAATTGAGATATAATTGATATA---------ACATTAGTTTTATGGGTACAACTTAATGGTT
CAATGTTTGT----------AGGGATAAACTNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNN
>Sus_scrofa
TCAAGAGGGTCAAATT-AT-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------ACAGGTTGT----AAAGTTAG----CCTATAT---GGG-TAAA-TTTA-T
TATTA-----------TCTTATTGATATACAGTTGACATATA--ACATGATATTAGTTTCA-----------TAATGATT
CAATATTTGT----------AGGGTTAAATTTATTTTTAA---ATACTATGTAAGTTATATTTTTGAAGCAA-TATGTTC
AATAATGAGTTTTTAAGT
>Tursiops_truncatus
GCAAAAGGGTCAAATT-AT-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------ACAGGTTGTCTGCAAAGTTAGGTAACTAACAT---GGGATAAA-GTTATT
TATTA-----TTATTATTTTATTGAGATATAATTGACATACA--ACATTATATTCGTTTCAGGTGTACAACATAATGATT
CAATATTTGT----------GGGGATAAACTTATTTTTAA---ATACCATGTAAGTTATA-TTTTGAAACAA-TATGTTC
AATAATGTGTTTTTAGGT
>Equus_caballus
GCAAAAAGGTCAAATT-AT-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------ACAGGTTGTCTACAAAGTTAGGTAACTAACAT---TGGATAAA-CTTATT
TATTA---TCATTATTTTTTATTGAGATATTATTGACGTATA--ATATTATATAAGTTTCAGGTG-----------GATT
TAATATTTGT----------AGGGATAAAC--ATTTTTAA---ACAGTGTGTAAACTACA-TTTTGAAGCAATTAAGTTC
AATAATGTGTTTTCAGGT
>Tapirus_indicus
GCAAAAAGTTCAAATT-AT-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------ACAAGTTGTCTATAAAGTTAGGTAACTAACAT---GGGATAAA-CTTATT
TATTT--------ATGTTTTATTGATATATAATTGACAT-----ATAACACATTAATTTCAGGTGTACAACAT---GAGT
CAATATTTGT----------AGGGACAAAC--ATTTTTAA---ACAGTGTGTAAATTACA-TTTTGAAGCAG-TATGTTC
AATAATGTGTTTTCAGGT
>Myotis_myotis
GCAAATGAGTCAAATT-AC-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------ACAGGTTGTCTGCAAATTTAGGTAACTAACAT---GGAATAAA-CATTAT
TATCA---TCATTATT-ATTATTGATATATAATTAACATATA--ACATTATATTAGTTTCAAGTGTACAACAT-----TT
TGATATTTGT----------AG-GGTAAGCTTATTTTTAA---ATAGTATGTAAGTTATA-TTTTAAAATAA-TATGTTT
AAT-ATGTATTTTCAGGT
>Rousettus_aegyptiacus
TCAAAAGGGTCAAATTTAT-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------ACAAGTTGTCTGCAAAGTTAGGTAACTAATAT---GGAAAAAA-C----T
TATT--------------------------------------------------------AGATGTACTA--------CT
TGATATTTGT----------AGGGATAAACTTATTTTTAA---ATA----GTAAGTTACA-TTTTGAAACAA-TATGTTC
AATAATGTGTTTTCAGGT
>Condylura_cristata
GCAAAGGGATCAAATT-AC-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------ACAGGATGGCTGAAAAATTAGATAAATAACAT---ATGGAAAA-CATATT
TTTAA---------------------------------------------------------------------------
-------------------------------------------AAAATATATACATTACA-TTTTGAAGCAA-TATGGTC
AATAACATGTTTTTAGAT
>Solenodon_paradoxus
ACAAAAGGGTTAAATT-AT-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------ACAGGGCATCTAGAAAGTTATGTAACAAACAT---AGAAAAAA-TTCATT
TTTAA---------------------------------------------------------------------------
-------------------------------------------AGAGTATGTAAGTTATA-TTTGGAAATGA-TAT-TTC
AATA--ATGTTTTCAGGT
>Homo_sapiens
GCAAAAGGGTAAAATC-AC-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------ACAAGTTGCCTTCAAA-TTAGGTAACTGACAC---AGGATACA-CTTATT
TTTCA---------------------------------------------------------------------------
-------------------------------------------ATACTGTATATGCTATA-TTTTGAAACAA-AATGTTC
AATAATATATTTTCAGGT



Dog377_LINE

>L1_CARN7_3END
--------------------------------------------------------------------------------
--TTTTT---TTATTTGAGTATAATTGACATACAATGTTATATTAGTTTCAGGTGTAC-AACATAGTGATTCGACATTTG
TATACATTGTGAAGTGATC-------------------------------------------------------------
--------------------------------------
>Canis_familiaris
TGG-TAACTTCAATGTTACTGATGTTATATAT----TGGCAAAGGCAATATTGTT---TAGTAGTGTCTT------AAAA
CATT------TTATTGAAATATAATTGACATATAATGTTATATTAGCTTCAGATGTAC-AACATAATTATTTGATATTTG
TATG------------------TAGTGGCTT-----------------------------TCTT---AA--TAAATGCTT
TCAGTTCTGCCTGAGAGCAAATTGTCATAGAAATTGGC
>Felis_catus
TGG-TGACTTCAATATAACTGTCATTATACAT----TAGCAAGGGCAGTATTGTT---TAGCGGTGTTTT------AAAA
AATT------TCATTGAAGTGTAATTGATATATAACACTATGTTAGTTTCAAATGTAC-AACATAATGATTTGATATTTG
TATA------------------TAGAGCCTT-----------------------------TCTT---AA--TAAATATTT
CCAGTTCTGCCTGCGAGCAAATTGTCATGGAAATCGGC
>Manis_pentadactyla
TAG-TGAGTTCAATAAAACTGACATAATATAT----TGGCAAAG-CAGTATTATT---TGGTGTCTTTCT---TTTAAAA
AATG------TTATTGAGGTGTAATTGACATATAACACTATATTAATTTCAGGAGTAC-AACATAATGATTCAATATTTG
TATA-------------------AATAGCTT-----------------------------TCTT---AA--TAAATATTT
GTAGTTCCACCTGAGAGCAAATTGTCATGGAAAATGGT
>Sus_scrofa
TAA-TAACTTCAAAAAAATTGACTTAAGATAT----TGGCAAAAGCGATAATGTT---TGATGGCGTTCC----------
--TTTTTTGGTTGTTGAGGTATAATTGACATATAAC---ATGTTAGTTTTAGATGTAC-AACATAATGATTTAATATTTG
TA----------------------------------------------------------GCAT---TG--TGAGTATTT
TTAGATCCAGAGGAGAGAGAATCATCATAGAAATTGGC
>Vicugna_pacos
TGA-TGAATTCAGCATAACTGACATAAGATAT----ACACAAAAGCAAAATTCTT---TAGTGCTTTTTT----------
--TTAA------ATTGAGGCATAATTGACATATAACATTACATTAGTTT-AGGTGTAC-AACATAATGATTTAATATTTG
TGTC------------------TAGTGGCTT-----------------------------CCTT---AA--TAAATATTT
TTAGCTCCACCCGAGAGAAAATTGTCATAAAAATTGAC
>Equus_caballus
TGG-TGACTTCAATATAACTGACAT-ATATAT----TGGCAAGGGCAATATTGTT---TAGTGGCCTTTT-------TAG
AATTTTTT--TTATTGATGTGTAATTGACATATAATATTATGTTAGTTTCAGGTCTACAAACATAATGATTCAATATTTG
TTTA------------------TAGTGGCTT-----------------------------TTTT---AA--TAAATATTT
TCAGTTCTACCTGAAAGCAAATTGTTATAGAAATTGGC
>Ceratotherium_simum
TGG-TGACTTCAATATGACTGACATAATATAT--ATTGGCAAGGGCAATATTGTT---TAGTGGTCTTTT---TTAAAAA
AAATTTT---TTATTGAGGTGTAATTGACATATAACATGATATTAGTTTCAGGTGTAA-GACATAATGATTCAACATTTG
TATA------------------TAGTGGCTT-----------------------------TCTT---CA--CAAATATTT
TCAGTTCCACTTGAAAGCAAATTGTTATCGAAATTGGC
>Myotis_myotis
TGA-GGACTTCCATGTAAAACACATCACCCAC----TGCCAAGGGTAATATTGTT---TAGTGGATTTT--------AAA
AATTATT---TTAATGATGTGTAATTGACATGTAACATTATATTAGTTCCAGATGTAC-AACATAATGATTCAATGTTTG
TATA------------------TAGTGTTTT-----------------------------TCTT---AA--TAAATATTT
TCAGTTCCACCTGAGAGCAAATTGTCATAGAAATTTGT
>Rousettus_aegyptiacus
TGG-TGACTTCAATATAAATCATGTAACATAT----TGCCAAGGGCAATATAGTT---TAGTGGCTTTCT---CTTCTTT
AATTGTTTTTTTATTGAGGTA-AATAG--ATATAACATTATATTAGTTTCAGATGTAT-GACATAATGATTAGTTATTTG
TATA------------------TAGTGGTTTTCTTAATAAATATTTGTATATAGTGGTTTTCTT---GA--TAAATATTT
TTAGTTCCACTTGAGAGCAAACTGTCATAGAAATTGGT
>Condylura_cristata
CAGTTGACTTCAGTAAAACTGATAAAATACAT----TGTCAAAGTCAATAGTGTC----AGTAACCTTTT----------
--------------------------------------------------------------------------------
-------------------------------------------------------------------AAAATAAACATGT
CAAG-TCCACCTGAGAGCAAATTGTCATAGAAATCGAC
>Solenodon_paradoxus
TGG-TGACTTTAATATAAA-GACAAAGTATAC----TGGCAAGGGAAATACTGTT----AGTGTTTTTCT----------
--------------------------------------------------------------------------------
-------------------------------------------------------------------TAA-TGACTACTT
TCAAATCTAACAGAGAGTCAGTTGTCATAGGGATTGAC
>Homo_sapiens
TAT-TGATGCCAATAGAACTGTCATCATATATTGATTGGCAAGGATGATATTGTT---TAGTGGCTCTTT----------
--------------------------------------------------------------------------------
-------------------------------------------------------------------AAA-TAAATATTT
TTGGTTCCAACCGAGAGAATCATATTATAGTAATTGAC



Dog379_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------TTTTTCC---AGCTTT----------------------ATTGAGGTATAATTGACA
AATAAAA-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---ATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATATAC------------------------GTATACATTGT
GAAATGATTACCACAATCAAG-CTAATTAACATATCCATCACCTCACATAGTTAC---------------------CATT
TTTTT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------GTGTGTGGTGAG--AACACTT-------------
--------AAG-ATCTACTCTCTTAGCAAATTTCAAGTATACAATACAGTATTATTAACTATAGTCACCATGCTGTACAT
TAGATCTCCAGAACTTATTCATCCTGCATAACTGAAACTTTGTACCCTTTGACCAACATCTCCCCATTTCCC--------
------------CCACC-CCCCAGCCCCTGGCAACCACCATTCTA-----CTCTCTGCTTCTATGAGTTTGACTTTTTT-
--AG--------ATT-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------CCACATATAAGTGAGATCATGCAGTATTTGTCTTTCTGTGCCTG
GCTTATTTCACTTAGCATAATGTCCTCCAGG--TTCATCCATGTTG---TCACAAATGGCAGGATTTCCTTCTTT-TTTA
AGGCTGAATAATATTCCATTGTGT--------------------------------------ATATATAC-----CACAT
TTTCTT----------------------TATCCATTCATCCGTCGATGGACACTTAGGTTGNTTCCATATCTT-----GG
CTATTGTGAATA---ATGCTGCAATGAACATGGGAGTGCAGATATCTCTTC--GAGATACTGATTTCATTTCCTTTGGAT
--ATATACCCAGAAGTGGGATTGCTGG-ATCATATGGTAGT---------------------------------------
-------------------------------------
>Canis_familiaris
GAAGAGGATATATA-------ACA-TTTCCTGTCTCTCTCCTTATA----CTTATTAGATTT--AAA---CCATAGCTTA
TTTTATA------------------ATTATTGT---------------CTTTTTGGTATCATG-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------TTTTTTA----TTTTT----------------------ATTGAGATACAACTGACA
TGTAATA-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------TATTAGTTTCAGGTATACAACATAATGATTTGATATTT------------------------GGGTATAGTGT
GAAATGATCACCACAATAAAGTTTGACTAAC--ATCC------------AGTTAC---------------------AATT
TTTTT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------TCTTCTGATGAG--AACTTTT-------------
--------AAG-TTCTACTTTCTTAGCAACTTTCCAATATACAATACAATGTTATTAACTATAGTCACTATGCTGGAAAG
TATATCCCCAGCACTTACTTATTTT--ATAACTGGAAGTTTGTATCTTTTGACCACCTTTACCCATTTATTTAACCTACC
C-----------TCAAC-ACTGTACCTCTGGCAACCAACAATCTG-----TTTTCTGTATCTCTGACTTTGATATTTTT-
TAAG--------ATT-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------CCATATATAAGTGAG--------AGATTTTTCTTTCTCTATCTG
ACTTGATTTACTTTACATAATGCCCTCAGGGTCTCCATCCATGTTA---TTAAAAATGACATGGCTTCCTTTTTTAACAA
TGGCTGAATGAGATATATTTATAT---------TTTATTTATATCTATATATCTATATATATCTATATAT-----CACTT
TTTTTT-----------------------ATCCATTCATCCATTGATGGGCACTTAGGTTGTTTCCATGTCTT-----AC
CTGCTGTAAATA---ATGCTTCAAAAAACATGGAGGTGCATGTATCTCTTT--GAGTTAGTGTTTTCATTTCTTTTAGAT
--AAATACCCAGAAATG-AATTGCTGG-ATC-------------CACTG---CATCCTTTATT---AAGGCATCCTGGG-
TATTTGGAATTTTGGCTAGAATCCATGTACAAACCAA
>Felis_catus
GAAG---ATATGTA-------ACA-TTTTCTGC----CTTCTTATA----TTTATTAGATTT--AAA---CCACAGCTTC
CTTTATT--------------------------ATTATTATTATTATTATTATTATTATTATTATT--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AGGTATGTTTTT----GTTTT----------------------ATTGACATATAATTGACA
TATGATA-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------TATTAGTTTCACATGTACAACACAATGATTTAATATTT--------------------------GTATATTGT
AAAATGATCACCGCAAT-AAGTTTAGCTAAC--ATCCATCACCACACATAGTTAAC--------------------AATT
TTTTT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------TTCTTGTGATGAG--AACTTTT-------------
--------ACG-ATGTACTCTCTTAGCAAGTTTCAAATATATAATACAG-ATTATTAACTATAGTCACCATGCTGGACAG
TACATTACTAGGACTCACTTACTTT--ATAACTGGAAGTTTGTACCTGTTGACCACCTTTACCCGTTTCATGCCCTCCAC
CC----------CCACT-ACCCTACCTCTGGCAACTACCAATCTG-----TTTTCTGTATTTATGACTTTGACCTTTTT-
TAAG--------AAT-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------GCACATATAAGTGAG--------ATATTTGTCTTTCTCTATCTG
ACTCATTTCATTTCCCATAATGCCCTTGGGGTCTCCATCCATGTTG---TCTAAAATGGCATAGCTTCCTTCTTT-TTTA
TGACAGAATAATATTCCATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT------GTGTGTAT-----CACAT
TTTCTT----------------------TACCCATTCATTCATTAATGGATGCTTAGGTTGTTTCCATGTCTT-----AG
CTAATGTAAATA---ATGCTTCAATGAACATAGG-GTGCACGTGTCTTTTT--GAGTTAGTA-TTTCATTTCTTTTAGAT
--AAATACCCAGAT------TTGCTGGTATC-------------CACAT---CTTCCATTATT---AAGGCATCCTGAA-
TATTTGGAATTTTGGCTAGAATTCTTGTGCCAACCAA
>Manis_pentadactyla
GAAG-AGATAGAAAGGGTGTACCA-TTTTCTGCCTCTTTCTTTATA----GTCATTAGATTT--AAA---C---AGCCTC
TTTTATT------------------ATTACTGT------------------TTTCATATCAT------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------TTTTTTGGTTGCTTAT----------------------ATTGACATATAACTGACA
CATACCA-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------TAATAGTTTCAGGTGTACAACATAATGATTCAATATGT------------------------GTAGGTATTGT
GAAATGATAACCAC----AAGTTTAGCTAAC--ATCTATCACCATAC--AGTTACA--------------------ATTT
TTTTT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------TCTTGTGATGAG--AACTTTT-------------
--------AAG-ATGTACTCTCTTAGCAACTT-CAAATACATAACACAG---TATTAACTATAATCACCATGCTGGATTT
TACATCCCCAGTACTTATTTATT----ATAACTGGAAGTTTATACCTTTTGACCACCTTCACCCATTTCATCC-------
------------CCTAT-CCCCTTCCTTTGGCAACCACCAATTCT--------------TTTTTGTTTTTCCTTTTTTTT
TTTA--------ATT-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------CCACATACGAATGAGATCACACAGTTTTTGTCTTTCACAGTCTG
TCTTATCTCACTTTGCATAATACTATCAAGG--TCCATCCATGTTGTCATCACAAATGGCAGGANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------NNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>Sus_scrofa
GAAGAAGATATAAAGGATATTAAA-TTTTCTGCCTATCTTTTTATA----CTTA---GATTT--AAA---C-ACAGCTTC
CTTTGTT--------------------------------------------TATGGTATCATATTT--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AAAG-TTTTTTA------AAA----------------------ATTGAGATATAATTGACA
TTTAACA-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----TTACACTAGTTTCAGGTGTATAGTGTAACACTTCAGTATAT------------------------GTGTATATTAT
GAAATGATCACCAC----AAGTTTAGTTAAC--ATTCATCACCACATATAGTTACA--------------------AATT
TTCTT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TTTATTGTTGTAAG--AACTTTT-------------
--------AAAGATCTACTTTCTTAGCAACTTTCAAGTATATAAT-----ATTATTAATTATAGTCACCATGCTGTGCAT
TACATCCTCCTGACTTATTTATTTT--ATAGCTGGAAGTATGTGCCTTTTGACTACCTTCACCCATTCCCTCCATTCCAC
ATCTCCCCACCATCCCA-CCCTTGCCTCTGGCAACCACCAATCTAATCTGTTCTCTGTATCTGTGAGTTCAGGTTTTTTG
TTTGTTTGTTTTATT-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------CCACATATAGGTGGGATCATTTGGTATTTGTCTTTCT-TGTCTG
ACTTAGTTTACTTAGCATAATACCTTCCAGG--TCCATTCATATTG---TCACAAATGTCAGGAACTCCTTTTC-----A
TGGCCAAATAATATTCTGTGGT----------------------------------------ATATATAC-----CACAA
ATTCTC----------------------TATCCATTCATCTGTTAATGGGCAATTAGGTTGTTTCTATATTTT-----AG
CTACTGTAAATA---ATGCTGCAGTGAACATGGGGATGCAGGTATCTTTTA--------GTGTTGTAGTTTCATTCAGAT
AAAAATACCCAGATGTGGAATCGCTGA-ATC-------------TGTAG---TTTCCTTTATT---AAGGCATCCTGAAG
GAATTGGAATTTTGACTGGAGTCCTTGTGCAAACCAA
>Bos_taurus
GAAGAGGATATAAAGGATATAACA-TTTTCCAC--CTCTCTTAATA----CTCCTTAGATTT--AAA---T--CTGTTAT
TATAATT--------------------------------------------TTTGGTATCATGTTG--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------TTATGTTTGTTT----TTTAA----------------------ATTGAGATATAATTGACA
CATAACACTATTCTTGTTTCAGGCTTCCTAGATGGTGCTATTGGTAAAAAATCTGCTTGCCAATGCAGGAGATGCAGGAG
ACGCGGGTTCTATCCCTGGGTCTCCAGGGAAGATGCCCTGGAGAAGGAATGGCAACCCACTCCAGTATTCTTGCCTGGAA
AATTCCACAGACAGAAGACCTTGGTGGGCTATAGCCCATGGGGCCGCAAAGAATAGGATACGACTGAAGAGATTGAGTAC
ACGCTCATTCTTGTTTCAGGTGTATGACATAA---TTCAATATGT------------------------GTGTATACTGT
GAAATAATCACCACAAG-AAGTTTAGTTAAC------ATCACCATATATAGTTGCATTGTAAGAACTTCAAAGATTTATT
CTCTTCAGTTCAGTTCAGTTCAGTCGCTCAGGCATGTCCGACTCTTTGCAACCCCATGAATCGCAGCACTCCAGGCCTCC
CTGTCCATCACCAACTCCCGGAGTTCATTCAAACTCACATCCATTGAGTCGGTGATGCCATCCAGCCATCTCATCCTCTG
TCATCCCCTTCTCCTCCTGCCCCCAAACCCTCCCAGCATCAGGGTCTTTTCCAGTGAGTCAACTCTTTGTATGAGGTGTC
CAAAGTACTGGAGTTTATTCTCTTAGCAACTTTCAAATATACAGT-----GTTATTAACTATAGTTACTGT---------
TACATCCCCTGG-CTTATTTATTTT--ATAACTTAAAGTTTGTGCCT-TTGACTACCTTCATCCATTCCCCTCATTTCAC
ATCTTCACCCTACCCCCACCCCCATCTCTGGCAACCACCAGTCAAACCTGTTCTCTGCATCTGTGAGTTCAGGTTTTTTG
TTTGTTTGTTTTATTCCACATATATGTGTGCATACTCAGTCACTCAGTTGTGTTGGAGATTTTGCAACCCTATGGACTGT
AGTCCACCAGGCTCCTCTGGCCACTGGATTCTCCAGGCAAGAATACTGGTTGCCATGTCCTCCTCCAAGGGATCTTCCTG
GAGGAAGATTGAATCCAGGGTCTGCCGCATGGCAGATGGATTCTTTACTGTCTGAGCCACTAGGGAAGCCCAAGAATATT
GGAGTGGGTAGCCTATTCCTTCTCCAGGGGACTTTCCCAACCCAGGGATCAAAGCCTGGTGTCCTTTGTCTTCTGCATTG
GCAGGTGTTTCTTTACCACTGAACCACCTGGGAAGCCCACATATAAATGATATCATATGGTATTTGTCTTTCT----CTA
ACTTATTTCACTTAGCATAATACCCTCTAGG--TCCATTCATGTTG---TCATAAATGGCAGGAATGCCTTTTTT----A
TGGCCAGATAGTATTCTGTGGT----------------------------------------ATATATAC-----CACAA
ATTCTC----------------------TATCTGTTC---CATCGATGGGCACTTAGGTTGTTTCTGTATCTT-----AG
CTACTGTAAATA---ATGCTGCAATGAACATGGGAGTATAGATATCTTTTT--GAG---ATATTTTTGTTTCCTTCAGAT
AAAAATACCCAGATGTGGAATTGTTGG-ATC-------------TGCAG---CTTCCTTTATT---AA-GCACTCTGAAA
GAATTGGAAGTTTGCCTGGAATTCTTGTGTAGACCAA
>Myotis_myotis
GAAAAGAATATAAAGCTTGTAACA-TTTTCTGCCTCTTTCTAAGGGAAATCTCATTAGATTT--AAA---C-AAAGCTTT
CTTTATT--------------------------------------ATTATTTTTGGTATCATGTA---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------TTTTTAA-------------------------------ATTTACATATAATTGATA
TATAATAT------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---AACATATTAACTTCACATATACAACATAATGATTCAATATTT------------------------GTATATATTGG
AAAATAATCACAAA----AAGTCCAGTTAAT--ACCCATTACTGCCCAT-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------GGGAG--AACTTTC-------------
--------AAG-ATACACTCTTTTAGCAACTTTCAAATATACACTACAGTATTATTAACTCTGGTCACCATGCTGTATGT
TACATCCTTATGATTTATTTATTTT--GTAAC--AAACTTTGTACCTTTAGACCACCTTCTCCCATTTTGCCCACCC---
------------CATAC-TATCTGCTTCTGACAACCATCAATTAA--------------------------ATTTTTTTT
AAAG--------ATT-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------CTACATATAAGTGAAATCATACAGTATTCCTCTTTCTTTGTTTG
ATTTATCTCATTTAGCACAATGCCCTCAAGG--TCCATTCCTGTTA---TTGCAACATACAGTTTATTCTTGTATAATTA
TTTATTAAT--TATTGTATTATTTGCC-----------------------------------ATATGTACAACTGCAAAC
CTACTTTTGCATCACCATGTGAGATAGATATAGATATATCTATAGAT--ATATCTATATCTATCTCACATCTTCATTCAT
TTACCATGGACATTTATGATGCAATGAACATGGGGGTGCAGATATTTTTTTTCGAGTTACTA-TTTTGTGTCCTTTGAAT
--AAATTCTCAGAAGTAGAATTGCTGT-ATC-------------CACAG---TGTCCTTTATT---AAGGCATCCTGAAA
GAACTGGAAATTTGGCTGGAATCCTTGAGAAAACCAA
>Rousettus_aegyptiacus
GAAGCGGATATAAAGGAACTAACA-TTTTCTGCCTCTTTCTAAAGGAGATTTCATTAGATTT-AAAA---C--TAGCTTT
TTTAATG---GAATATTACTCAGCCATAAGAAGAGATGAAATACTGCCATTTGTGACAACATGGATGGACCTCGAGATAA
TTATGCTAAGTGAAATAAGCCAGATAGAAAAAGTTGAAAATCACATGATATCACTTATCTGTGGGGTATAAACCTAAAAG
CAACAAATGAACAGGACAAACAAACAGAGACTCATGGACATAGACAATAGACTAGTGGTTACCAGAGAGTAGAGGGTAGG
GGAGGAGGGAGAAAGTAGATGGGGTAAAGGGAGTCAAATATGTGGTGACAGGAAGAAATCTAACTATGGGAGGTGAACAC
ACAATATAAATGTATATGCCTTACCGTTAAAATATACAGCTGAAACTTATTGGATTTTGTTAACCAATGTCACCGTAAAA
ACAAACAAAAAACCCCAACATAGCTTTCTTTATTATTATTGTTTTCGGTACAATTGTTAAAAATTGAGATATAATTGACA
TGTCACC-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------TATTAGTTTCAGGTGTACAACATAATGATTCTATATTT------------------------GTATATATCAT
GAAATAATCATCACGAA-AAGTTTAGTTAAT--ATCCATCACCACAC--AGTTAGA--------------------AATT
TTTTT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------TCTTGTGATGAG--AACTTTT-------------
--------AAG-ATACACTCTTTTAGCAACTTTCAAATATACACTATGGCATTATTAACTATGGTCACCATGCTGTATAT
TACATCCCCAGAATTTATTTGTTTT--ATAACTGGAAGTTTGTATCTTTTAATTACCTTCACCCATTTTGC---------
------------TCACCCCTCCCAATCCCAGCAACCATCAATTAAAAGA-------ATATATATATATATATATATATAT
TTAG--------ATT-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------CCACATATAAGTGAGGTTATGCAATATTTATCTTTCTCTGTCCG
ACTTATCTCATTTAGCATAATGCTTTCAAGG--TCCATCCATGTTT---TTGCAAATGGCAAGATTTCCTTTTTT----A
TGGTTGAATAATATTCTTACATATATATGTGTGTATATATATGTACATATATATGTGTACATATACATAT-----CACAT
TTTCTT----------------------TATCCACTCATTTATTCATGGACACTTAGATTGTTTCCATGATTT-----GG
CTACTATAGATG---ATGATGCAGTGAACATGGAGGTGAAAATATCTTTTT--GAGTTAGTATTTTTATTTCCTTAGGAT
--AAATACTCAGAAGTAGAATCATTGG-AGC-------------CACAG---CTTTC-TTATT---AAGGCACCCTGAAA
AAATGGGAATTTTGGCTGGAATCCTTGTG-AAAACAA
>Condylura_cristata
GAAGAGGATATAAA-------------ACCTGC--TTTTCCTTATA----CTCATTAGATTT--TAA---T-GTAGTG-C
CTTCCCT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------TCTTTTG----ATTTC----------------------ATCAAGATTT--------
--TAAAA-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------ATATATATAATAGTATATTTTTACAT-----------------------------CATTTTGT
GCATT---------------------TTCCC--ATCTCTTGC----------------------------------AATC
CCCTT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------G--GACTTCC-------------
--------------------CATCACCAAATCACCCATGTGCCAT-----------CACCATAGTC-----------CAG
TGCATTTCCCTTCCCCTGCTGTTTT------------------------TGATCCCATTCACCCTTCTACC---------
------------CCCAC-AAAATGTCTCTAGTATATAGCTGTTCA------TCATTATCATTATTTGCTCGCATGTTCCA
TCAT--------ATT-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------CCTGCTATGAGAGAAACCATCTGGTATTTTTCCATTTCTTTCTA
GCATGTTTCACTAGGCATGATCTTTTCCAGT--TCCATCCATGTTG---CTGCAAAAGACACG--TTTCTTTTTTTTTGG
TTGCTGAGTAATATTCCATAGTGT--------------------------------------ATATGTAC-----CACAT
CTTTTT----------------------AATCCAGTCATCCACTTTTGGGCATTTGGACTGTTTCCATGTCTT-----TC
CAATTGTGAATA---AAGCAGCAATAAACATGGGGGTGCAGGTATCTTTTT--GAATCAGTGCTTTTGTGTCTTTTGGGT
--AGATACCTAGGAGTGGGATTGCTGG-GT--------------CATAGGGAAGCTCCATGTT---AAG-CAGTTTGAGG
AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>Scalopus_aquaticus
GAAGAGGATATAAA---------A-TCTTCTGC--CTTTCTTTATA----CTCATTAAATTT--TAA---C-ATAGCT-C
CTTCACT-----------------------------------------CCTTTTGATTTCATGCAG--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------A----TTTTTTG------TTT----------------------ATTGAGATTCAATTGACA
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------TATTAGTTTAAGGT----AATATAATGACCCTGTTTGTCTCTCTCTGCCTCTCTCTCTCTCCATCTATCTTGT
GAAATGATCACTGCAAT-AAGTCTAGTTAAC--ATCCATCACCACACATATTTACA--------------------CATT
TTTTT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------CTTGTCATGAG--AACTTTT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------TTTTTT-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------AATATTCAT-------------
---------------------------------TGCATATATGT------------------------------------
---------------------------------------------------------------------------CACAT
TTTCTT--------------------------TGTTTACTTGTTGATGGATTTTTGTATTGTTTCCATGTCTT-----GG
CTGCTATGAACA---ATGCTTCAGTGAACACAAGAGTATAGCTATCTCTTT--GAGCTAATGATTTTGTTTCCTTGG---
--ATGTACCCAGAATTGCGGTTGCTGG-AT--------------CAGATGGTAGTTCTATTTT---NNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>Equus_caballus
GAAGAGACTACAAAGGATGCAACA-TTTTCTGC----CTCTTTATG----TTCATTAGATTT--AAA---C-ACAGCTTC
CTTTATT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------AAGGCATTCAGAAA
AAATTGGAATTTTGGCTGGAATTCTTGTGCAAAACAA
>Ceratotherium_simum
GAAGAGGATATAAAGGATGCAACA-TTTTCTGCCTCTTTCTTTATA----TTCATTAGATTTAAATA---C---AGCTTC
CTTTATT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------AAGGCATTCAGAAA
AAATTGGAATTTCGGCTGGAATCCTTGTGCAAAACAA
>Homo_sapiens
GAGGAGGATATAATGAATATAACATTTTTCTGCTTCTTTCTTTATA----CCTATTAGATTT--AAA---C-ATAGCTTT
CTTTATG-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------------------------------------------AAAGCATTCTGAAA
GAATTGGAATTTTGGCTGTAATCTTTGTGCAAGCCAA



Dog383_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
------TTTTTCCAGCTTTATTGAGG-TATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTT
GATATACGT---------ATACAT---TGTGAAATGATT----ACCACAATCAAGCTAATTAACATATCCATCACCTCAC
ATAGTTACCATTTTTT------------------TGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAAATTTCA
AGTATACAATACAGTATTATTAACTATAGTCACCATGCTGTACATTAGATCTCCAGAACTTA-TTCATCCTGCATAACTG
AAACTTTGTACCCTTTGA--------------------------------------------------------------
------------
>Canis_familiaris
AGTAAATGTGTGAGTACAGGTGGTGGTTTGAAATGTTCTTTAGTA-------AG---TTCCAGATTGTCTTTCC----TG
AAAAATTTATTTCAGCTTTATTGAGG-TATAATTGGCATATAAAACTATAAGATATTTAAAGTGCACATTGTGGTGTTTT
GATACAA-----------AGATAT---TGAGAAAGATT-----CCTTCCATCTAGTTAATGAACATATCCATCATCTCAC
ATTTTTATTCTTTTGT--------------------------GTGAGAACATTTAAGTTTTACTTTGTTAGCAAATTTCA
ATAATACAACACACTGTTATTAGCTGTAATCACTGTGTTTTACAGAAGATCCTCAGCCTTTA-TCCATCGT--GTGGTTG
CAAGTTGG-------------TACAAGCTGGTCCTAAC---CTCACAGTCCCAGCATATG-CCACAGC----AGGTGCCA
GTGGGACCTCAC
>Felis_catus
AGTAACTGAATGAGTGCAGATACTGGTTTGAAATGTCCTCTAGTAA------AG---TCCCAGCTAGTCTTTTC-----T
GAAAATATATTTCAGCTTTATTGACG-TGTAACTGACATAGAAAACTGTAAGATGTTTAAAGTGCACAC--TGGTGCTTT
GATACACATATACCACACGTATAT---CGTGAAAGATT-----CCTTCCATATAGTTAACT----TATCCATCACCTCAC
ATGTTTATTATTTTTT------------------------TTGTAAGAACATTTAAGTTTTACTCTGTGAGCATATTTCA
ATCATACAACACACTGTTATTAGCTATAATCACCAGGTTTTACATCAGCCTCTCCACCTTTA-TTCATCTC--GTAACTT
CAAGTTTG-------------TACAAGCTCATCTTAAG---GTCACGGTCCCAGGATATG-CCACAGC----AGGTGCCA
GTGGGACCTCCC
>Manis_pentadactyla
GGTAATTGAATGAGCACAGATATTGCTTTGAAATGTCCACTAATAAGGAGTAAG---TCCCAGAGAGCCTTTTT---CTT
TTTAATTTATTTCAGGCTTATTGAGA-TATTACTGACATATAAAATTATAAGATATTTAAAATGCACATTGTGATGTCTT
TGTATATGT---------ATACGT---TGTGAAAGGATT----CGGCCCATTCAGTTAATGAACACATCTGGTACCTCAT
GTATTTGTCCTTTTT---------------------------GTGAAAAAATTTAAGTTCTACTCTCCTAGCAAATTTCA
ATTATACAACACAGTGTTCTCAACTATAATCACTGTATTTTACATTAGATCCTCAGACTTTATTTCATCTT--ACAGCTG
CAAGTTTG-------------TACCAGCCAGTCTTAAC---TCCCTGGTGCCAGAATGGG-GCACAGT----AGGTCCTG
GTGGGACCTCAC
>Sus_scrofa
AATAACTGAATGAGTACAGATATTGGTTTGAAATGTCCTCTAAGGAGTAGTGA----TCCCAGATAGTCTTTTT-----A
AAATTTTCATTTCAATTTTATGGAGATTATAATTTACATTTAAAATTATAAGATATTTAAAGCATACACTGTGGTATTTT
GATACACAT---------GTAGAT---TGTGAAAGAATTACTCCTCCCCATCTAGTTAATTAAGTCACCCATCAGCTCAC
ATGCATATTTT---------------------------GAGGGGGAGAACATTTACGTTCTGCTCTCTTAGCTAATTTCA
ATTATACAATACAGGGTTATCAACTAAAGTCATTATGTTTTCCATTGGATGCTCAAACCTCA-TTCATCTT--ATAGCTG
------------------------------GTCTTAA----AG--TGGTCCTAGCATCTG-CCACAGT----AGGTGCCG
GTAGGACTTCCC
>Bos_taurus
AATAACTGAATGAGTACAGATATTAGTTTGAAATGTCCTCTAAG---TTGTGAG---TACCAGCTAGCTTTTTT-----A
TAAAAGTTATTTCAGTTTTATAAGAGACATAACTGACATATAAAATTATAACATATTTACACCATACACTCTGGTGTTTT
CATGCACATA--------ATAAAT---TGTGAAAGAATCCCCACCCCTCATCTAGTTAATTAAGCCATCCATCAGCTCAC
ATACATATTTT---------------------------TGGGGCGAGAACACTTAAGTTCTACTCTCCTAGCAAATTTCA
ATTATACAATACAGTGCTATCAACTATAATCACCATGTTTTCCATTAGACGCTCAAACGTTA-----TCTT--ATAGATG
GAAGTCTA-------------TACCGGCTGGTCTTAAC---TC--TGGTATTAGCATATGCCCATGAC----AGTTGTCA
GTGAGACTTCAC
>Equus_caballus
AGTAATTGAATGAGTAAAGATAGTGGTTTGAAACGTCCTCTAATAATTAGTGAG---TTCCAGCTAGTCTTCTT----TT
GAAAATTTCTTTCAGTCTTATTGAAG-TATAATTGACAT--AAAATTGTAAGATATTTAAAGTGAACCTCATGGTGTTTT
GATACACAT---------ATACAT---TGTGAAAGGAT-----CCACCCATCTAGTTAATTACCACATCCTTCACCTCAC
ATATTTATCTTTTTTT-----------------TTTTTTTTGGTGACAACGTTTAAGTTTTCCTCTCTTAGTAAACTTCA
ATTATAAAATACAGTGTTATCAACTGTAATCACCACGTATAATATTAGCTCCTGAGACCTTA-TTCATCTT--AGAGCTG
CAAGTTTG-------------TCCCAGCTAGTCTTAAC---TCCACGGTCACAGCACACG-ACACG----------GCCA
GTGGGACCTCAC
>Ceratotherium_simum
AATAACTGAATGATTACAGATACTGGTTTGAAATGTCCTCTAATAAGTAGTGAG---TCCCAGCTAATCTTCTT----TT
TTAAATTTATTTCGGCTTTACTGAGG-TATAATTGACATATAAAATTGTAAGATATTTAAAGTGTACATTGTGGCGTTTT
GATACACAT---------ATACAT---TGTGAAAGGATT----CTTCCCATCTAGTTAATTAACAAGTCCTTCACCTCAC
ATATTTATCTTTTTTT----------------------TTTGGTGACAACATTTAAGTTCTCCTCTCTTAGCAAATTTCA
TGTATACAATACAGTGTTATCAACCATAATCACCATGTATAACATCAGATCCTCAGACCTTA-TTCATCTT--ATAGCTG
AAAGTTTG-------------TCCCAGCTAGTCTTAAC---TCCATGGTCACAGGATATG-CCACA----------GCCA
GTGGGACCTCAC
>Myotis_myotis
AGTAACTAAATGAGTACAAATATTGGCTTAAAATGTCCTTTATTAAGTAGTGAG---ATACAGCTAGTCTTTTT------
AAAATTTTATTTCAGCTTTATTGAAG-TATAAATGACATATAAAATTGTGAGATATTTAAAGTGTAGATC---ATATTTT
GATACATTT---------ATATGTGAGGGTGAAAGAATT----TCCCTCATCTAGTTAATTAACACATCTATCACTTCAC
ATAGCTATCTTTTTTTTTTTGGTTTGGTCATTTTTGTTTTTGATGAGAACATTTAAGTTATTCTCTTTTAGCAAATTTCA
----------------TCATCTGCTATAATCACCATGGTTTATGTTAGGTCTTCAGATCTTA------CTC--ATAGATG
AAAGTTTG-------------TACCAGCCAGTCTTTAC---TTCATGGTCTCAGCATTTG-CCACAGC----AGGCACCA
GTGGGACATCAG
>Rousettus_aegyptiacus
AATAACTAAATGAGTATAGATATTGCTTCGAAATGCCCTCTAATGA-TAGTAAG---TTCCAGCTATTTTTTTT------
----TTTAATTTCAGCTTTATCGAGG-TGTAACTGACATACAAAATTGTAGGCGATTTAAAGTATACATTGTGGTGTTCT
GATAAAC-----------ATATAT---GGTGAAAGGAT-----CACCCCATCTAGTTAATTAACACATCGATCACTTCAC
ATATTTATCATTTTTT--------------TGTGTGTTTTTGGTGAGAACATTTATGTCCTGCTCTC--AGCAAATTTGC
ATTATGCAATACGGTGTTATCA-CTATAATCACCATGTTTTGCATTACATCCTCAGATCATA-TTCATCTT--ACAGCTG
AAAGTCTG-------------TATCGGCTAGTCTTAAC---TCAGTGGTCCCACCATATG-CCACAGC----GGGCACCA
GCGGGACTTCAC
>Condylura_cristata
AATAAGTG-GTAATCACAGTGGATGATCTGAAATGCCCTTTCAG---TGGTGAG--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------TTCCCACTGGATTTATC---TCCC---------------------------AGGTGCCA
GCAGGACCTCAC
>Erinaceus_europaeus
AATGTCTGGGCAAATCCAGTTATTAGAATG-AATGTTTTATAAG---TAGTGA---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------TTCCAAGTAGTCTCAAC---TCCATGGTGTCCA-------CTATAGC----AGGCATCA
GGGAGAATTTAT
>Homo_sapiens
AATAACTGAATGAATACAGATATTGGTTTGAAATGTCCTCTGACATTTGGTGAG--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------TCCCAGCTAGTTTTAAC---TCCCTGGTCCCAGTATATG-CCACAGTTAAGAGACACCA
GTGGGACCTCAC



Dog385_LINE

>L1_CARN7_3END
--------------------------------------------------------------------------------
---------------------TTGTATGGTGACAGA---TGGTAACTAGACT-TATTGTGGTGATCACTTCACA----AT
GTATACAAATGTCGAATCA---------CTATGTTGTACACCTGAAACTAAT---ATAACATTGTATGTCAATTATA-CT
CAAATAAAAAAA--------------------------------------------------------------------
------------------
>Canis_familiaris
CAAACC---CGTAGGTTACTCTGT--AAGCTCATTGGATATA-----CCTTCACTGG-TTAA---AATGG-----CTTT-
-------TC--TGTGGTG-------------ATGGA---TGTTAAGTAGCCT-TATTGTGTTAACCATTTCACA----AT
GTACGCAAATATTGAATCA---------TTACGTTGTATACCCAAAACTA-------------CTATGTCAATTAAGTCT
CAATTTTAAAAAGTTT-----AATTGCTTCAATTAATAATG------ACAATTGAATAGATGCAAAGGGAAAATATAAAG
GGCTAAGCTCTTGAAAGT
>Felis_catus
CAAATA---CATAGGTTACTGTAT--GAACGCACTGGATATA-----TATTCATTGA-TTAA---AATGG-----CTTTT
TTATAACTG--TGTGGTG-------------ATAGA---CGCTCAGTAGACT-TATTTTGATAACCATTTCACA----AT
GTATACAAATACTGAATCA---------TTATGTTGTATAGCCCAAACTA-------------ATATGTCAATTTAATCT
CAATTTAAAAAATTTT-----AATTGCTTCCATTAATGATG------AAAATTGAGTAGAAGCAAAGGTACAGTACAAAG
TGCTAAGTTCTTGAAAGT
>Manis_pentadactyla
CAAATGACACATAGGTTATTATATTCAATCTCACTGGATATA-----TTTTCATTGG-TTAA---AATTG-----CTTTT
TGG----TG--TGTGGTG-------------ATGGA---TGTTAACTAGACT-TACTGTGGTAATCATTTTACA----AC
ATATACAAATATTGAATCA---------TTATGTTGTACACCTGGAACTGAT------ATGTTATATGTCAGTTATATCT
CAA------AAAATGTTT---AATTACTTCAATTAATGGTG---GAGAAAATTGAGTAGAAGCAAAGGT---ATATGAAG
TATT-ATGTCTTGAGTGT
>Sus_scrofa
CAAACA---TAGAAGACATTAAACCCAAGCCTATTGGATATA-----CTTTCATCAA-TTAA---AACTG----CTTTTT
TTGTAACTATGTGTGGTG-------------ATAGAAGGTATTAACTAGACT-TATTGTGTT---CATTCCCTAATACAT
ATATACAGATATCAAATCATAACGCTGGCTATGTTGTACACCTGAAACTAAAAGTATAA--TTGCATGTCAATTATACAT
TAATT----AAAATTTTT---AATTGCTTCAGTTAATGGTG---AAGGAACTTGAGTGGAAGCAAAGGTGTAATATAAAG
TGTTAACTTCTTGAAAAA
>Tursiops_truncatus
CAAACAACACATAGGTTATTA-ACCCAAGCCCATTGGATATAAATA-TTTTCATCAA-TTAA---AATTG-----CTTTT
TTGTAACTC--TGTGGTG-------------ATGGA---TGTTAACTAGACT-TCTTGTGGTAATCATTTCATAATACAT
ATATACAGATATCGAATCA------TTGTTATATTGTACACCTAAAACTAATAGCATAATGTTCTATGTCAATTATATCT
CAATT----AAATTTTTT---AATTGTTTCAGTTAATGGTG---AAGAAAATTGAGTAGAAGCAAAGGTGTAGTATAAAG
TGTTGACTTCTTGAAAGT
>Equus_caballus
CAAACAACACATAGGATATTATATCCAAGCCCAATGGGCAGAAATA-TTTTCATTGA-TTAA---AATTG-----CTTTT
TTGTAACTG--TGTGGTG-------------ATGGA---TGTTAACTAGACT-TTTTTTGGTGATCATTTCACA----AT
ATACACAAATGTTGAACCA---------TTATATTGTACACCTGAAACAAAT---ATAATGTAATAGGTCAATTATACCT
CAATTTAAAAAATTTATT---AATTGCTTCAATTAG-GGTG---AAGAAAACCGAATAGAGGCAAAGGTATAATATAAAG
TGTTAAGTTGTTGAGATT
>Ceratotherium_simum
CAAACAACACATAAGTTATTATATCCGAGTCCATTGGGTATAAATA-TTTTCCTTGA-TTAA---AAATG-----TTTTT
TTATAACTT--TGTGGTG-------------ATGGA---TGTTAACCAGACT-TATTGTGGTAATGATTTCACA----AT
ATATACAAATATTGAATCA---------TTAT-TTGTACACCTGAAACTA-----TTAATGTAATATGTCAACTTTATCT
CAATTAAAAAATTTTTTT---AATTGCTTCAATTAATGGTG---AAGAAAATTGAATAGAAACAAAGGTATAGTATAAAG
TGTTAACTTCTTGAAAGT
>Myotis_myotis
CAAACA--ACAAAGGTTATTTCAT-CAAGCCTATTGGATGTAAATA-TTTTAATGAA-TTAA---AATCGAATTTTTTTT
TGGTAACTA--CATAGTG-------------ATGGA---TGTTAACTAGACT-TATTGTGGTGATCATTTTGCA----GT
ATATACCAATATAGAAGAA------TTATTATGTTATACACCTAAGGCTA----------ATATAAAGCCAATTATATCT
GATTTTTAAAAAAATTTT---AATTGCTTCAACTAAGGGTG---AA-AAAATTGAGCTAAAGCAGAGGTATAATAT----
------CTTCTTCAAAGT
>Rousettus_aegyptiacus
CAAACAACACATAGGTTATTTTATCCAAGTTCATTGGATATAAATA-TTTTAATTGATTTAA---AATTG-----TTTTT
TCATAACTATATATGGTG-------------ATGGA---TGTTAACTAAACTATATTGTGATGATCATTTTGCA----GT
ATAAACAAATATGGAATCA---------TTATGTTGTATACTTGAAGCTA--------ATATAATATGTCAATTATATCT
CAAGT---AAAAACCTTT---AATTGCTTTGATTAATGGTG---AAGAAAAATGAGCAGAAGCAAAAGTATAATATAAAG
TGTTAACTTCCTGAAAAT
>Condylura_cristata
CAAGCAACACATAAGTGATTATGTCCAAGTTCACTAGATATAGATATTTTTCATTGA-CT-----AATGA----------
----AAATT--AATGATG--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------AAGAAAACTGAGTAGAAGCAAAGGTAGA-----AAG
CATTCATGTCTTGAAAGT
>Solenodon_paradoxus
CAAGCAACATGCAGGTTATTAGGTCCAAGACCATTAACTGTAAATA-TTTTAATAG--TTA----AAATT----------
CCTTAAATTAAAAAGGTG--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------AAGAAAATTGAGCAAAAACAAAGGTATAATACAAAG
TTCTAACTTCTTGAAAGT
>Homo_sapiens
CAAACAACACATAGGTTATTATGTCCAAGTCCATTGGATATAAACATTTTTTATTA--ATAA---AATTG----------
-CTCCAATC--AATGGTG--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------AAGAAAACTGAATTGAAGAGAATATGTAATATAAAG
TGCTAGCTTCTTGAAAGT



Dog386_LINE

>L1_CARN7_3END
--------------------------------------------------------------------------------
-----TTTTTTTATTTGAG-TATAATTGACATACAATGTTATATTAGTTTCAGGTGTACAAC--ATAGT---GATTCGAC
ATTTGTATACATTGTGAAGTGATCACCACAATAAGTCTAGTTACCATCTGTCACCATACAANGTTATACAATATTATTGA
C-------------------------------------------------------------------------------
------------
>Canis_familiaris
ACTACTTAGTTGAGTAGTCAGGGATCAATGAGC------ATGCCATCTTCTTTGTTACC---------------------
-----------------TGATATACTTGACATAAAACATTATGTTAGTTTCCGGTATATAACATATAAT---GATTTGGT
ATTTGTATATATTACAAAATGATCACCACAATAAGTCCAGCCAACAACAT------------------------------
-----CTAAAACATTTTTTAAG-TATT---CA-CATTGCTTCCAGAAAGATGTTGCAACTCGTTAGCAGAATGTA---TT
CTT---ATCAGA
>Felis_catus
ACTAC--ACCTGGGAAGTCATAGATAATAACTTCAACCAATGTCATCCTCTTTCTTACC---------------------
-----------------TGATGTAATTGGAATATAGCATTATGTTAGTTTCAGGAATATAAC--ATAAT---AATTTGGT
ATTTGTATATATTGCAAAGTGACCACCACATTAAGTCTGGTTAATGATCA------------------------------
-----TTTTTAAATTTTTTGAG-TATT---CA-CGCTGCCTCCAGAAAACTGTTGCAGTTCTTTAGCAGAATGTGCTCTT
CTT---ATCAGA
>Manis_pentadactyla
ACTACTTGGTTGGGAAGTCACAGATCA------------GTGCCATCCCCTGTCTTATC-------CATTTTTTTTTCAA
TT--------------GAGATATAATTAACATGTAACATTATGTTCATTTTAGGTGTACAAT--ATAAT---GATTTGAT
ATTTATATATATTGTGAAATGTTCCC------AAATCTAGCTGACAACAA------------------------------
----TTTAAAATATTTTTTAAG-GATT---CT-CACTGCCTCCAGAGAAATGTTGCAATTCTTCAGCAGCATATACTCTT
TTT---ACCTGA
>Sus_scrofa
ACTACCTAGTTGATAAGTCATGGATCAACGAAC------ATGCCATGCTCTTTCTTACC--------AACTTTTAAAAAA
TT--------------GAGATATAATTGACCTCTAGCGT--TGGTAGCTTCAGATGAATGCA--ATAAT---GATTCCAT
ATTTGTATATATTGTGAAATGATCAC---AACAAGTCAAGATAACCACAA------------------------------
-----CTTTTTAAACTTTCACGGGATT---CA-CACTGCCTCCAGAAAAATGTTTCAACTCTTAAGCAGAATGT--TCTT
TTT---ATCAGA
>Tursiops_truncatus
ACTACTCAGTTGATAAGTCATGGATTAATGAGC------ATGCCGTACCCTTTCTCACC--------AACTCTTTTAAAA
TT--------------GCGATATAATTGACATATAACAT--TGTTAGTTTCAGATTCAC------TAAT---GATTCCAC
ATTTGTATATATTGTGACATGATCAGTACAATAAATCAAGCTAACAACAA------------------------------
----TTTAAAAAATGTTTTAAG-GATT---CT-TACTGCCTCTAGAAAAATGTTGCAACTC--TAGCAGAATATACTCTT
CTT---ATCAGA
>Equus_caballus
ACTACTCTGTTGGAAAGTCATGGATCAATGAGC------ATGCCATCCCCTTCATTACC--------ATTGCTTTT---A
TT--------------GAGATGTAATTGGCATATAACATTATGTTAGTTTCAGTTGTACAAC--ATAAT---CATTCGAT
ATCTGTATAT------------------------GTCTAGCTGACAAGAA------------------------------
------GTTTTTGATTTTTAAG-GCTT---CA-CATTGTCTCCAGAAAAATGTTGCAACTCTTTAGCAGCATGTACTCTT
CTTCTTTCTAGA
>Ceratotherium_simum
ACTATCCAGTTGGGAAGTC-TGGATCAATGACC------ATGCCATCCCCTTCATTACT--------ATTGTTTTTT--G
TT--------------GAGATATAATTGGCATATAACATTATGTTAGTTTCAGGTATACAAC--ATAAT---GATTCGAT
GTTGGTATATATTGCAAAATGATCACCATAATAAGTATAGCTGACAACAA------------------------------
------TTTTTTAATTTTTAAG-GATT---TA-CACTGCCTCCAGACAATTGTTGCAACTCTTTAGCAGAATGTACTCTT
CTT---ACCAGA
>Myotis_myotis
ACTACTCAGTTGGAAAGTCCCAGGTCAATGATC------ATGCCTTCTCCTTTCTCATC-----------ATTTCTT---
TT--------------GAGATAT-ATCGACATATTACATTA-----ATCTCAGGCATGCTGCCTATAGTAGTGACTTGAT
ATTTGTATGTATTGGGAAATGATTACCACATGAAGTCTAGCTCACAACAT------------------------------
-------------------AAC-GATT---CA-CACTGCTTCCAGAAAAATGTTATAACT--TCAGCAGAATGCACTCTC
CTGCTTGTCAGA
>Rousettus_aegyptiacus
ACTACCCATTGGGAAAATCATGGATCAATGAGC------ACACCATCTCCTTTCTTAGA--------AATATTTTTT---
TT--------------GCAATATAATTGACA-----CATTATGTTAGTTTCAGGTGCACAAC--ATGAG---GATTTGAT
ATTCGTATATATTGCAAAATGATCACCACAGTAATCCTGGCTAACAACAT------------------------------
-------------------AAA-GATT---CA-CACT-----------------------CTTTAGCAAAATGTACTCTT
CTT---ACCAGA
>Condylura_cristata
ACTACTCACTTGGAAATTCATGGACCAGTGCAC------ATGCCATTCCATTTCTTTCT---GATATATCTTTTAATGAA
TT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------CATCCCTGAATCCAGAAAAGTGTTGCAACTGTCTCTGAGAATGCAGTCTT
CTGTT-GTCAGA
>Erinaceus_europaeus
ACTACTCCGCTGGAAATTCATGGATCACTCAGT------ATGTTGGTCTCTTCCCATTT-------TAATTTTTTTTAAA
CT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TA-TATGGAATCCCCA-AACTGCTACAACTC---AGCAGGATATATTCTG
CTCTT-AATAGA
>Homo_sapiens
ACTATTCAGCTGGGAATTTACTGGTTAATGAAC------ATATCATTCCCTTTGTCATA--------ATTTTTTAATGGA
TT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------CA-TACTAGCTCCAGAAAAATGTTGCAAATGTTTAGCAGAATATATTCTG
CTTCTTATCAAA



Dog387_LINE

>L1MA9_3END
-------------------------------------------------------------------------TGGAGAT
CTAATGTACAGCA------------TG-GTGACTATAGTTAA---------TAATACTGTATTGTATACTTGAAATTT--
--GCTAAGAGAGTAGATCTTAAGTGTTCTCACCACACACAAAAAAATGG------TAACTATGTGAGGTGA-TGGATATG
TTAATT---AGCT-TGATTGT-GGTAATCATTTCACAATG-------------TATACGTATATCAAAACATCACGTTGT
ACACCTTAAATATATACAATTTTTATTTGTCAATTATACC-TCAATAAAGCTGGAAAAA---------------------
------------------------------------------------------
>Canis_familiaris
AT----TTTAATCTTCAGAACAACACTGTGAATTAATTTAAAATATTAATTTTAT---AATAAGAAAATT----------
-ATATGTAAAGCA------------TGGGGGACAATAGTTAA---------TAGTACTGTATTGTGTATTTGGAAGTT--
--GCTAAGAATGTAGATCTT----GTTCTCATGACAAGAAAAAGGAATTCGTAACTAACTATGTGAGGTGC-TAG--ATG
TTGATG---AGAC-TTACTGT-GGTAAACATTGCACAACA-------------TATATAAATATTGAATC---ATGTTGT
ACACCTGAAACCAATATAA-TGTTAAATGTCAATTATATT-TCAATTTTTTAAAAAG---------GGTGGGAAAATT--
-TCTGTTTAAGGCTACCCAGC---CAAGAGGCAAAACTC-AGCACTCCTGACTG
>Felis_catus
ATCTTATTTAATCTTCAGAACA---CAGTGGATTAATTTATAATATTAATTTTAT---AATGAGAAAATT----------
-ATGTGTACAGCA------------TG-TGGGGGATAGTTAA---------TAATGCTGTATTGCATATTTGGAAGTT--
--GCCGAGAAAGTAGATCTTAAAAGTTCTCATTGCAAGAAAAAGGAATTTG----TTACTATGTGAGGTGA-TGG--ATG
TTAACTATAAGAC-TTATTAT-GGTGATTATTTCACAATA-------------TATGCAAATAGTGAATCATTATGTTGT
CCACCTGAAACCAATGTGA-TGTTAAATGTCAATTGTATC-CCANNNNNNNNNNNNN---------NNNNNNNNNNNN--
-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>Manis_pentadactyla
ATTTTATTTAATCTGCAGAACAACTGTGTACGTTAATTTATATTATTAGTTTTAC---AATAAGAAACTT----------
-ACATGGACAGCA------------TG-ATGACTATAGTTAA---------TAATACTATATTGCATATTTGGGAGTTAA
TAGCTAAGAGAGTAAA---TAAAAGTTCTCATCACAAGAAAAAAAATTTTA----TAACTATGGGTGGTGATTAG--ATA
TTAACT---ACAC-CTATTGT-CATGATCATTTCACCATA-------------TAAACAAATACTGAATCAGGATGTTAT
ACACCTGAAACTAACATAA----TATATGGCAATTATATC-TCAATTAAAAAAGAAAAGAAAA---AAGAAGAAAATG--
-GAG-TTTAAAGTTGCACAGCTAACAAAAGGCAAGACTC-AGAACTCCTGACTG
>Sus_scrofa
ATCTTATTTAATCTTCAGAACAACAC--TGAGTTAATTTTTATTATTAGTTTTAT---AATGAGGAAATT----------
-ACACATACAGCA------------TG-GTGACTATAGTTAA---------TAATACTGTATTGCATATTTGGAAGTT--
--GCTA--AGAGTAGATCTTAAGAGTT---ATCACAAGAAAAAAATTTTGT----TAACTGTGTATGGCGA-TGG--ATG
TTAACT---AGAT-TTATTGTCTGTGATCATTTCACTGTA-------------TATACAAATATTGAATCATTATGTTGT
ACAACTGAAACTAGTATAA-TGTTATATGTCAATTG-----TCAATTTAAAGCAAAGAAAA-----GAAATGAAAATT--
-GAA-TTTAAGCTTGTGCAGCTAACAAAAGGCAGGACTC-AGAACTCCTGATTG
>Bos_taurus
AT--TATTTAATCTTCAGAATAGCACTATGAG-TAATTTATATTGTTGATTTTAT---AATTAGAAAATT----------
-ATATGTGCAGCA------------TG-TTGACTATAGT--------------------TATTGCATATTTGGAAGTT--
--GTTAAAAGAGTATATCTTACAAGTTCTCAGCACAAGAAAAAAATTTTG-----TAACTGTGT--GGTGG-TAG--ATG
TTAACT---AGAT-TTATTGTCTGTGAACATTTCACAATA-------------TATGCAAATATTGAATCCCTGTGTTGT
ACATCTGAAACTAATGTAA-TCTTGTACATCAATTACA---TCAATTTTT----------------TTTAAGAAAATT--
-GAGTTTTCAGGTT--ACAGCCAACGAGAGGCAAGACTT-ACAATTCCTAACTG
>Equus_caballus
ATCTTCTTTAATCTTCAGAACAC-----TGAATTAATTTATATTGTTAGTTTTAT---AATGAGAAAATT----------
-ACATGTACAGGA------------TG-GTGACTA----------------TAACGCTATATTGCATATTTGGAAGTT--
--GCTAAGAGAGTAGATCTTAAAAGTTCTCATCACAAGAAAAAAAATTTTC----TAACTATGTATGATGA-CAG--ATG
TTAACT---AGAC-T-------TGTGAGCATTTCTCACTATATACAAATATCGTATACAAATATCAAATCATTATGTTCT
ATACCTGAAACTAATATAA-TGTTAAATGTCAGTTATATC-TCAATTTAAAAAA------------AAGAGGAAAATT--
-GAG-TTTAAGGTTACACAGCTAACAAGAGGCAAGACTC-AGAACTCCTGATGG
>Ceratotherium_simum
ATCTTATTTAATCTTCAAAACAATAC--TGAGTTAATTTATATTATTAATTTTAT---AATGAGAAAATT----------
-GCTTATACAGGT------------CA-GTGACTATAGTTAA---------TAATACTATATTGCGTATTTGGAAGTT--
--GCTA--AGAGTAGATCTTAAAAGTTCTCATCACAAGAAAAAAAATTTTG----TAACTATGTTTGATGA-GGG--ATA
TTAACT---AGAC-T-------TGTGATCATTTCACACTATATATAAATATCATATACAAATATCAAATCATTATAGT--
----TTGAAACCAATGTAA-TGTTATATGTCAATTATATC-TCAATTAAAAAA-------------AAAACGAAAATT--
-GAG-TTTAAGGTTGCACAGCTAACAAGAGGCAAGACTC-AGAACTACTGACTG
>Myotis_myotis
ATCTTATTTAATCTTTAGAGCAACTCTGTGAGTTCACCTATATTATTAGTTGTAT---AATGAGAATATT----------
-ACATGTACTATAGTTAATACTATATT-GTGACTATAGTTAATACTATAGTTAATATTATATTGAATTTTTGGAAGCT--
--GCTAA-AGAATAGATCTTAAAAGTTCTCATCACAAGAAAAAAAATTG------TAACTGTG----GTGA-CAG--ATG
TTAACT---AGATATTGTCATTAATGATCATTTCACAATGT------------TGAATAAGTTTCCAATTATTATGTTGT
ATACTTGAAACTAATATAA-TATTATATGTCAATTGTATT-TGAATAAAAAT--------------ATTAAAAAAATT--
-GAA-TTTAAGGTTGCACAGCAAATAGGAAGCAAAACTCAAGAATTCCTGACTT
>Rousettus_aegyptiacus
ATCTTATTTAATCTTTAGAACAACTC--TGACTTAATTTATAT--TTAGT--TAG---AATGAGAAAATT----------
-ACATGTACAGCA------------TG-GTGGCTATAGT------------TAATACTGTATTGCAAGTTTAGAAGTT--
--GCTAAGAGAGTAGATCTTAAAAGTTCTCATCATAAGAAAAAAATTTTCG----TAACTATGTATGCCAA-TGG--ATG
TTAACT---AGGC-TTGTTGT-GGTCATCATTTTACAAAGT------------CGCATAAGTATCTAATGATTATGTTGT
ACACTTGAAACTAATATAA-TGTTATATGTCAATTAAATCAGTAATAAAAAGAAAAAGA-------GAAAAGGAAATT--
-GAC-TTTATGGTTGCACCGCTAACAAGAGGCAAAACTC-AGAACTCCTGATTG
>Condylura_cristata
ATCCTAT--------------------------------------TTAATTTCAG-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------ATTA------TT--
-GAG-TTTAAG------CAGCTAATAAGAGGCAAGAATT-AGAATTCCTGACTG
>Sorex_araneus
ATCATATTTGATTATCAGAGCAGTACTGC----TAATTTATAT--TTAGTTTTTT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------CATGAGAAAATA--
-AAA-TTAAAGATTGCACAGCTAAGAAGAAGCAAGGT---GAAATTCTTATCTG
>Homo_sapiens
AT--TATTTAATCTTCAGATTGACACTGTGCCTTAATTTATGTTATTAGA--TTT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------ATGAGAAAATG--
-GAG-TTTAAGACTGTATAGCTAGCAAAAGGCAAGACTC--AAACTCCTGACTG



Dog389_LINE

>L1_CARN5_3END
----------------------------------------------------------------------------GGTG
AGCACAGCATAAC----GTAT--------AGAGATGTTGAATCACTATGTTGTACACCTGAAACTAATGTAACATTGTGT
GTCAACTATA-CTCAAATAAAAAA--------------------------------------------------------
-------------------------
>Canis_familiaris
ATGTTGATCCATGTTGACATAGCTTTTG--CTCAGTTCCTTGCATCTAGGAT---AAATATATGCTACAT----------
------TCACAATATGCATGT--------AGAAATATTTAATCATGATGTTGTACACCTGATACTAATGTAAGGATATAT
GCCAATTGTATCTCAATTTAAAAAT---AAATCTCT-ACTGAATCAT---AATTAAACAGAGGAAGTATCTGGGCCTAAG
AGAATCTA-AAATGGCTGTGCCTCC
>Felis_catus
ATGTCGACCCAAGTTGAGATA-CCTTAGCTCTCAGTTCCTTGCACCCAGGAT---AAATCTATACTGTGTCAC-------
------TCACAATATGCATAT--------ACAAATATTTAGTCATTATTTTGTACACCTGAAACTAATGTAATGTTATAT
GCCAATTATACCTCAATT---AAAA---AAGTCTCT-ACTGAATCAT---ATTTAAACA---GAAGTGTCTGGGCCTAAC
AGAATCTA-----GTCTGTGCCTCT
>Manis_javanica
GTGTGGATCCATGTTGAGGTAACGTTAG--CTCAGTTCTTTGCTCCCAGGAT---AAATCTATACTGTATCAT-------
------TCACAGT----ATAT--------ACAAATATTGAATCATTATGTTGTACACCAGAAACAAATACGATGTCACA-
GTCAATTATATCTCAATTTTAAA-----AGATCTCT-ACTGTATTGT---AATTAAACAGAGGAAGTTTCTGAGTTTAAC
AGAATCTA-AAATGCC--TGCCTCC
>Sus_scrofa
ATGTTGATCCAT-TTAAGGTAGCTTTAG--CTCACTTATTTTGTCTCAGGAT---AAATCAATACTGCATCAT-------
------TCACAAT----ATAT--------ACAAATATTAAATC---ATGTTGTACACTTGAAACTAATATAATGTTAT-T
GTCAATTATATCTCAATA--AAAAA---AAATCTAT-ACTGCATCAT---AATTAAACAGAGGAAGTGTTTGAGCCTAAC
AGGATCTC-AAATGTC--TGTCTCC
>Bos_taurus
ATGCTGATCCATGTTGAGGAGGTGTCAG--ATCAGTTCTTTGTTCCCAGGAT---AAATCCATACTGCATCAC-------
------TCACAAT----ATAT--------ACAAATATCAAGTCATTATGTCATACACCTGA----AATGTAATATTATAT
GTCACTTATATTCGAATTTT---AA---AAATCTCT-AACGCATTGT---AGTTAAACAGAGGAAGTGTCTAAACCAAAC
AGAATCTA-AGATGTC--TGTCTCC
>Equus_caballus
ATGCTGATCCATTTTGAGGTAGGTTTAG--ATCAGCTC--TGCTCCCAAGAT---AAACGTATACGGCATCAT-------
------TTGCAAT----ATAT--------ACAAATATCGAATCATTATGTTGTACATCTGAAATTAATATTATGTTATAT
ATCAACTGTATCTCAATA--AAAAA---AAATCTCT-GCTGCACTGT---AATTAAACAGAGGAAGTCTCTGGGCCTAAC
AGAATCTA-AAATGT---TTCCTCT
>Ceratotherium_simum
ATGTTGATCCGTGTTGAGGGAGCTTTAG--CTCAGCTCTTTGCTCCCAGGAT---AAATGTATGCTGCATCAT-------
------TCGCAAT----ATAT--------ACAAATAATGAATCATTATATTGTTAACCTAAAACTAATATTATGTTAGAT
ATCAATTATATCTCAAT----AAAA---AAATCTCT-ACTGCATTAT---AATTAAACAGAGGAAGTGTCTGGGCCTAAT
AGAACCTA-AAATGT---TGCTTCC
>Condylura_cristata
ATGTTTATCCATATGCAGATAGCTTTAG--CTGAGTTCTTTGCTCCCAAAAT---AAATCTATACTACATGAT-------
------TTGCAAT----ATATACAAGTAAACAAATATTGAGACATTATGT-GTACACCTGAAATTAATATATTGTTTTAT
GTCAATTACATCTCTCTTTTAAAAA---AAATCTCT------ATGAT---AATTAAACATAGGAAGTGTTTGGGCCTAGA
AGAATCTA-AGATGTC--TGTCTCC
>Solenodon_paradoxus
ATACTGAAGCATGTGGAAGAAGCTTTAG--CTCCATTTTTTACTCACAGGAT---AAATATATACAATATCAT-------
------TCACAAA----ATAT--------ACAAATATCCAAACATTATGTCATA-ACCTGAAAATAAC---ATGTTACAT
GTCGATTATATTTTATTTT---TTT---TAATCTCTTACT--CTCAC---AATTAAACAGAGGAAGTGTCTAGACCCAGC
AGAATTCA-AAATGTC--TGCTTTC
>Myotis_myotis
ATATTGATTGGTGCTGAGGTAGCTTTAG--TTCAGTTCTTTGCTCCCAGGAT----------------------------
--------------------------------------------------------------------------------
----------------------------GAGTCAAT-ACTGCATCAT---AA----GCAGAGGAAGTATCTGGGCCTAAC
AGAATCTAGAAATGTC--TGCCTCC
>Rousettus_aegyptiacus
CTGTTAATCCACATTGGCAAAGCGTTAG--CTCATTTCTTTGCTCCCAGGAT----------------------------
--------------------------------------------------------------------------------
----------------------------AAACCTCT-ATTGCATCAT---AA----ACAGAGGAAGTGTCTGAGCCTAAT
AGAATCTA-ACGTGTC--TGCCTCC
>Homo_sapiens
ATGTTGGTGCATGTTGAGATAGCTTTAG--CTCAATTCTTTGCCCCCAGGAT----------------------------
--------------------------------------------------------------------------------
----------------------------AAATCTAC-ACTACATCAT---AATTAAACAGAGGAAGTGTCTGGGCCTAAC
ACAATCTA-AAACATC--TCCCTCC



Dog390_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
-TTCAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGTACAGCATGGTG-ACTATAGTTAATAATACTG--------
--------------TATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCACCACACACAAAAAAA--T
GGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACG------------T
ATATCAAAACA--TCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA
--------------------------------------------------------------------------------
-------------------------------------
>Canis_familiaris
GAGGGGTAGCTTCCCAGAGGAAGTGAGTTCTATT-ACCTCTACTGAGATCT---GAAGAACAAGAAAGATTAGCCATA--
-----------TAAAGTAAATAGGTTATGGGGATATGATGCATAGCATAGTG-ACTATAGTTAATAATACTG--------
--------------TGTTGTATATTTAAAAGTTCCTAAGAGAGTAGATTTTAAAAG--CTCATCACAAGACAAAAAACTT
TGTA--TATGTGTGGTGATGG--ATATTTGCTTGACTTAATG---TGATCATTTCACAATCTATACA-------------
----CAAATCA--TTATGGTGTATACTGGAAACTACTATAA-TGTTGTATGTCAATTCTATCTCAATTGA----------
---AAAGAAAAAGAAAGATTAGCCA---GGTGAAAAAGCATGTGTATATATGTGTGTATTATGTGTATATGTGTGTGTAT
GGGTGTGCATGCACATAGGATACAGTGTTTCAAGTAG
>Felis_catus
GAGGGGTAGCTTTGCAGAGGAAGTGAGTTATATT-ATCTCTACGGAGATCT---GAAGAATGAGAAAGATTAGCCATA--
-----------TAAAATAAAT--GTCATGGGGATGTAATGTACAGCCTGGTG-ACTATAGTTAATAATACTGTATTATTT
ATTTATTTTCACTATATTGTACATTTAAAAGTTGCTACGAGAGTAGATTTTAAAAGTTCTCATTACAAGACAAAAAA---
-----CTTTGTGTGGTGATTC--ATGTTTGCTAGACTTAAGGTGGTGATCATTTTGCAATCTATACA------------C
ATATCAAATCATTTTATGTTGTTCACCTGAAACCAATATAA-TGTTATATGTCAGTTATATCTCAATT-T----------
---AAAAAAAAAGAAAGATTAGCCA---GGTAGAAGT--------------GTGTGTG-TGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTATGTGTAGGATAAAGTGTTTCAAGTAG
>Manis_pentadactyla
GAGGGATAGCTTCCCAGAGGAAGTGAGTTATATT-ACCTCTACTGAGATCT---GAAGAATAAGAAAGATTAGCCATA--
-----------TAAAATAAATAAGTCATCGGTATGTAATGTATAGCATAGTG-ACTACAGTTATTAATACTG--------
--------------TATTGTATATAGAAAAG------AGAGAGTGGATCTTAAAAACTGTCA-CACAAGAAAAAATATTT
TCTAACCATGTATGGTGATAG--ATGTTTACTAGCTTTATTGTAGTG---ATTTCACAATATATACA------------T
ATGTCAAATCA--TTA----GTACACCTGAAATGAATATAA-TGTTACATATAAATTATATCTCAGTA------------
---AAGAAAA--AAGAGATTAATCA---GGTGTAAAA---------------------------------GTGTGTGTAC
ATGTGTGCATGTGTGTAGGATAAAGTGCCTCATCTAG
>Sus_scrofa
GAGGG-TAGCTTCCCAGAAAGAATGAGTTACAATTATTTCTACTGAGATCT---GCAG---------GATCAGCCACA--
------------AGAATAA----GTCCTGGGGATGTAACCTATAGCATGGTG-ACTATGGTTAATAATACTG--------
--------------TATTGTATACATAAAAGTTGCTAATGGAATAGATCTTAAATGTTCTCATCAGATTAAAAAAAA--T
TTTAACTGTGTGGGGTGATGA--ATGTTAACTAGATTCAC-----TGATCATTTCACAATACATACA------------C
ACACTGAATCA--TTATGTTATATACTGGAAACTAATACAA-TGTTTTATGTTAATCGTATCTT--TT------------
---AAAAAAA--GAAAAATTAGCCA---GGTGGAATA-------------------------------------GTGTGT
ATGTGTGCATGTCTGCAGGATAAAATGTTTCAGGCAG
>Bos_taurus
AAGGG-TAATTTCCCAGAA-----GTGTTACAGT-ATTTCTACTGAGATAT---GAAGAACACAGAAGATTAACTTTA--
-----------TAAAATAA----CTCATGGGGATGTAATGTACAGTATTGCGAACTACAGTTTATAATACTG--------
--------------TATTGTATATTTAAAAGTTGCTAAGGGAATAGGTCTTAAAAGTTCTCATGAGATTTAAAAAAG---
TGTAACTGTGTGTGGTGACAA--ATGTTAACAAGATTT------------ATTTCACAATATATGCA------------T
ATATTGAATCA--TTATGTTGTCTACTGTAAACTAATATAA-TATTTTATGTCAATTATATCTTAA--------------
---AAAA-----GAAAAATTATCTG---GGTGGAAAA---------------------------------------GTAT
GTGTGTGCATATCTGTTGAATAAAGGGTTTTAGGGAG
>Equus_caballus
AAGGGATAGCTTCCCAGAGAAAGTGAGTTACATT-ATCTCCAGTGAGATCT---GAAG---AAGAGAGATTAGCCATA--
-----------TAAAATAAGTAAGGCGTGGGGATGAAATGGACAGCAGGGTG-ACTGTAGTTAATAATACTG--------
--------------TATTGTATATTTAAAATTTGTTAAGAGA-----------------------------AAAAAAATT
TGTAACTGAGTGTGGTGATGG--ATGTTAACTATACTTATTGTGGTGATCATTTCACAATATATAGA------------T
ATTTCATATCA--TTATGTTGTACACCTGAAACTAATATAA------AATGTCAATTATATCTCAACT------------
---AAAAAAA--GAGAGATTAGCCA---GGTGGAAAG--------------------------------------TGTGT
GTGTGCGCATTCATGTAGGATAAAGTGTTTCA-GTAG
>Tapirus_indicus
GAGGGATAGCTTCCCAGAGAAAGTGAGTTACGTT-ATCTCCACTGAGATCT---GAAGGATAAGAGAGATTAGCCATA--
-----------TAAGATAAGTGAGTCATGGGGATGTAATGTACAACATGGTA-ACTATAATTAACAATACTG--------
--------------AATTGT-TATTTAAAAGTTGCTAAGAG------------------------------AAAAAAATT
TGTAACTGTGTGTGGTGATGG--ATGTTAACTATACTTATTGTGGTGATCATTTTGCAATATATGTATATCTATATATCT
ATCTCAAATCA--TTATGTTGTACACCTGAAACTAATATAA------TATGTCAATTATATTTCAATT------------
---TAAAAAA--GAGATATTAGCCA---GGTAGAAAG----------------------------------TGTGTGTGT
GTGTGTGCATTCATGTAGGATAAAGTGTTTCA-GTAG
>Myotis_myotis
GAAGAATAATTTCCCAGAGGAAGTGAGTTACATT-ACCTCTACTGAGATCT---GAAGAGCAAGAAAGATGAACCATA--
-----------TAAAATAAATAAGTCCTGGGGATGCATTATGCAGAGTAGTG-ACTGTAGTTAATAAAACTG--------
--------------TATTGTATATTTAAAAGTTGCTAAGAGAATAGATCTTAAAAGTTCTCATCACAAGAAAAGAA---T
TATAAC--TGTGTGGTGATGG--AAGTTAACTAGATTTATTGAGGTGATAATTTCACAGTATATGCA------------T
ATATCAAATCA--TTATGTTGTACACCTGAAACTAATATAA-TGTCACAGGTCAATCATATCTCATTT------------
---AAAAAAG--AAAAGATTAGCCA---GGTGAAAAA--------------AGGCGTG---TGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGAGATAAGGTGTTGAAGGTAG
>Rousettus_aegyptiacus
GAGGGATAGCTTCCCAGAAGAAGTGAGCTACATT-ACCTCTACTGAGATAT---GAAGAGCAAGAAAGATTCACTGTA--
-----------TCAAATAAGTAAGTCCTGGAAATGTAATGTATATCATGCCG-GCTATAGTTAATAATACTGT-------
--------------TATTGTATATTTAAAAGTTGCTAAGCATGTGGATCTTAAAAGTTCTCATCACA--AAAAAAAAATT
TGTAAC--CGTGTGGGGATGG--AATTTAACTAGACTTATTGTGGTGATCATGTCCCAATATAGACA------------C
ATATTGAGTCA--TTATGTTGTACATCTGAAACTAATATAA-TGTCGTATGTAAATTATATCACAATT------------
----AAGA----TAAAGGATAGACA---GGTGGAAAA--------------GTGTGTG-TGTGTGTGTGTGTGCGTGCGC
GTGTGTGTGTGTGTTTAGGATAAAGTGTTTCGGGTAG
>Condylura_cristata
GTGGGATAACTTCTCAGAGGAA------CGTCTTGATTTTCAGTGAAATCT-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---GAAGAACAAGAAAGATGAGCCA----GTAGAAAG-------------------------------------GTGTGT
ATGTGTATATGATTGTAGGATAAAGTGTTACAGGGAG
>Solenodon_paradoxus
GAGAGAGAGCTTTCCAGAGAAGGTGATTTACAT-GATCTCCACTGAGATCT-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---GAAGAACAAGAAAGATGAGCCA---GGTAGAAAA-------------------------------------GCGTGT
GTGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>Homo_sapiens
GAGTGATGGCTTCTCAGA---AATGAGTTACATT-ATCTCCAGCAAGATGT-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---GAAGAACAAGGAAGACTAGCCG---GGTGGAAAA-----------------------------------------GT
TTATGTGCATACATATAAGATAAAGTGTTTCAGGGAA



Dog391_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
-----CCAGGGGCTGGG---GGGTGGGGGAAATGGGGAGATGTTGGTCAAAGGGTAC-AAAGTTTCAGTTATGCAGGATG
-AATAAGTTCTGGAGATCTAATGTACAGCATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGA
GAGTAGATCTTAAGTGTTCTCACCACACACAAAAAAA-----------------------TGGTAACTATGTGAGGTGAT
GGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAAT
ATAT-ACAATTTTTA-TTTGTCAATTATACCTCAATAAAGCTGG---AAAAA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------
>Canis_familiaris
CACATCAGCCAAATCG----ATTTCT-GGGGTGGGGCCAGAGC---CTTGGCACCTTG---AAGAAGA-TCC-----CCA
GG---------GGT-GG---GGGATGGGGAAATTGAATGTAGGTGGAC----------AGACTTTTAGTTA-------TA
-AGTAAATATTGGGGATGTAACATGCAACATGATGACTACAGTTAACA---CTATATGGTATATTTGATAATTGCTAAGA
GAGTACATTGTAGAAGTTCTCATCACAAGGAAAAAAACATTTTTTCC------TTTTTGTGTGTGTCTATATGACAAGAT
GG--ATGCTAG-TAAATTTTTTGTGGTCATCATTTGGCAATATAT--GTTGGTCAAATCATTAT--------------GC
TTAT-ACAGTGCTG--TATGTCAGTTATGACTCAGTAAAACTGC---AAGGAAA-AAGAAAAGCATGAGTGAAATACA--
---------------TGCTTGCACTTGTGTGCCCTGGAG--GACAAA-----AAG---GAAGGACCACCCTGGG---TGT
TTGTGGTACA-------------------GGTGGGCTGTGGACCGCATCCTAGTCATGTTGTCTGGTGATGGCAAGCTCT
CAGGTGATCAGAATG--CA-CAGCACGAGGCCTGCTGGTTTAGTTGTGGAC
>Felis_catus
CAGACCAGTGTAATCA----GTTTCTGGGGGTGAGGCCAGCGCTTTCTTGGCACCTTT---TAGAAGA-ATC-----CCA
GG--------------------GGTGGAGGGATTGAACGTAGG-GGTCAGAAGGTAC-AGACTTTAAGTTAT--AAAATA
-ATTAAATACTGAGGAAGTAACATACCGCATGATGACTATAATTAACA---CTGTGTGGTATATTTGATAATTGCTAAGA
GAGTAGATCCTAAAAGTTCTCATCACAAGGCAAATAAACATTTTTTCCTTTTTTTTTTTTTTGTATCTATATGAGATGAT
GG--ATACTAACTAAATTTATTGTGGTAATCATTTGGAAATATAT--GTAAGTTGAATCAGTAT--------------GC
CTAT-ATAGTGC----CATGTCAATTATAACCCAATAAAACTGG---AAGAAAA-AAGAAA------AGCAAAATAAA--
---------------TGCTT---GTTGTGTGGCCCAGGG--CACGGGGGTGAAAG---GAAGAACCACCCCAGG---TGT
CCGTGGCACCACACTGCAGTCAGATCGGTGGGGGGCTGTGAACCGCACTGTAGTCGAATCATCTGGTAAGGGCGAACACC
TGGTGGGTCAGTTCG--CC-CGGCGTGAGA---GCCGGTTTAGTTGTAGAC
>Manis_pentadactyla
CCCATCAGCCACATCA----GGTTCT-GGGGTGCAGCCAGAGA---CTCTACCCCTTT---AACAAGA-ACC-----CTA
GA-------------GGC--GGGGTGGGAGAATTGGCTGAAGGCTGCCAAAAGGTAC-AAGTTGCCAGTTAT--TTGGTA
-AATAAGCCCTGGGGTTGTAATGTACAGCAGGAGGACTAGCGTTAACACTGCTGTGGGACATATTCGAAA----------
---------------GATCTCATCATAAGGAAAGAAACATTTTTT--------CATTTTTTTGTATCTGTATGAGGTGAC
AG--TTGTTAACTAAACTTACTGTGGTAATCATTTCAAAGTATCT--GTGAGCCAAGTCATAATGCAGTACAATTTAGAT
TTAT-GTAGTGCTG--CATGTCAATTATGTCACAATAAAGCTTG---AAGAAAA-AT-AAAAGCACGAGCAAAACAAA--
---------------TGCTTATTGTTCTGTGCCTTGGGA--AAAACA-----------AGAGAACCACCCCAGT---TGT
TCCTGATACA---------------------TGGGCCATGGAGGGCGC--TGGACAAATCAT-TGGGAATGGGCAGCTGT
TGGTCGGTCAGAGCA--CA-T-GCATAAGGAGT-TCAGTTTGGTTGTGGGC
>Sus_scrofa
CACACCAGCTAAATCAGAGTGTTTCTAGGGATGGGGCCAGAGA-----CTGCACCTTT---AAGAAGA-ACC-----CTG
TG-------------------------AGGGATTGGATGAAGATGGTCAAAAGGTAC-AGGCTTCTGGTTAC--AGGATG
-ACTCTGTCCTGGGGCTGTGATGTACAGCATG---ACTGTAGTTAACACCGCCTGACGGTACATTTGAAAGTTGCTGAGA
GAATAGATCCTAAACG-TCTGATCACAAGGAATAAAATCTTTTTTTTT-----TTTTTTTTGGTCTC----TGAGATGAT
GG--AGGTTAATT--------TATTGTAATCGTTTCACAATCTGT------GTAAGGTGTTTATGCTGTACACCTTAAAC
TTATCATAGGGTTA--TATGTTAATTATATCTCAATAAAACCAG---AAGAAAA-A--AGAAGCATGAGCAAAAAAAAAA
AAAAAAAAAAAAAAGTGCTTATTGTTTTGTGTTCCACAG--GGAGAAA----------ATAAAAGTACCCCAGG---TAT
TTGTGCTTCA-------------------GGTGGGCCAGTCACG------------------------------------
-----GGTCAGAGTGCACAGCAGCAGCAAGCACGTGGCTCTGGTTGTGGGC
>Bos_taurus
CACACCAGCCGGATCAAAGCCTTTCTAGGTGTGGGGCCAGAGA---CTCCGCACCTTT---AGGAAGA-ACC-----TCG
GG-----------T-GG---GCCCTGAGAGGGTTGGATGAGGGCGGTCCAAAGGTGC-GGGCCTCCAGTTAG--AAGGCA
-AGTAAGTATTAGGGATGGCGTGGACAGCACG-TGACTGTGATGAGCTCTGCTGTGCCGTGTGTTTGAAAGTTGCCAAGA
GAGCAGATCCTGAAAG-TGTCATCGCAGGGAAAAGC-----------------CTTCCTTTTGTGTTTGTATGAGGTGAC
GG--AGGTTAGTTACTT---------TAATCATTTCCAGATAGAT--GTA-----------TGTGCTGTGCACCTCAAAC
TTAAAACAGCATCG--TACGTCAGTTACACCTTGATAAAACTAG---AA-----------AAGCGGGAGCAGGAGAAA--
---------------CGCCGATTGTTACCTGCCTC------------------------CGTGTCCGCCCTAG-------
------------------------------CGGGGCCGAGGACC--------------------GGTGCTGGAGAGCCCC
CTGGCGG----------CG-----GTGAGCCCGGCTGGTCACGCCGCGGGT
>Equus_caballus
CACATCAGCCAAATCAAA--GTTTCT-GAGATGGGGC-AGACA---CTTTGCACCTTT---AAGAAGA-ACC-----CCA
GG---------------------------------GTCAGAGGTGGTCAAAAGGTTCAAAACTTCCAGTTAT--AAGATA
-AATACATCCTGAGGATGTAATGTACAACATGATAACTATAGTTAACACCGCTGTATGATATATTTGAAAGTTGCTAAGA
GAGTAGATTGTAAAAGTTCTCATTACAAGGGAAGAAA------------GTGGGGTTTTTTGGTATCTATATGAGATGAT
GG--ATGTTAACTAAACTTACTGTGGTAGTCATTTCACAATATGT--GTAAGTAAAGTCGCTATCCTATACACCTTAAAC
TTAC-ACAGTGCTG--TATGTCAATTATAGCTCAATAAAACTGG---AAGGGAA----AAAATCATGAGCAAAAGAAA--
---------------TGCTTATTATTGTATGCCTCAGGA--AAAAAAACAGAA-----GAACCACCACCCCAGG---TTG
TTATGATACA-------------------GGTGGGCCATGGACCACACTGTAGACAGATCCTCTGGTGCTGGCAAGCTCT
C----GGTCAGAGTG--CG-CAGCGTGAGGAGTGTTGTTTTGGCTGTGAGC
>Ceratotherium_simum
CACACCAGCCAAATCAAA--GTTTCTGGAGGCGGGGCCGAAGA---CTCTGCACCTCT---ACGAAGA-ACC-----CTA
GG---------------------------------GGTAGGGGTGGTCAAAAGGTTCAAAACTTCCAGTTAT--AAGATA
-AATAAACCCTGGAGATGTAATGTACAACATGAGGACTATAGTTAACACTGCTGTATGATACATTTGAAGGTTGCTAAGA
G--TAGATCCTAAAAGTTCTCATCACAAGGGAAGAAACGTGTTTTTTTTTTTCTTTTTTTTAATATCTATATGAGATGAT
GG--ATGTTAACTAAACTTACTGTGTTAATCATTTCACAATATAT--GTAAGTAAAGTCACTGTACTGTACACTTTAAAC
TTAT-ACAGTGCTA--TATGTCAATTATATCTCAATAAAATTGG---AAGAAAA----AAAATAATGAACAAAATAAA--
---------------TGCTTATTATTGTATGCCCCAGGG--AAAAAATA---------GAACAACCACCCCAGG---TTT
TTATGATACA-------------------GGTGGGCTGTGGACCACACGGTGGACAAATCTTCTGGTAATGGCAGGCTCT
TGTTTGGTCAGAATG--CA-CAGCGTGAAGAGTGTGGGTTTGGCCATGGGC
>Condylura_cristata
CTCACCAGCCAAATCA----GCCTTTGGGGG-AGGGCCACAGA-----CTGCACCTTT---AAGGAGA-ACCGAGGGCCA
GG-----------C-AG---TGGGTGGAAGGACTGGCCCAA-GCGGCCAAGGGGCAT-AAACTTCTGGT-----GTGATG
TCTTAAGTCCCGGGGATGTCATGTACAGCGTGGTGCCTGCAGTTAACC-----------------------TCTCTAAGA
GAACAGATTCAAAATGTTTTCATCACAAGAAAGAAATC----------AGTTG-----TTTTTTATCTTGGTGCGATGCT
G---ATGTGAGCTAAGCT---TGCAGTAATCGTTTCATGACGTGC--GTAAGTCAGCTCATCCTGCTG--CGCCTGCGCC
TTGC-ACAGTGCGAGCTGAGGCAGCGCTGTCCCAGCACGACTGGTGTGGGGGGC-GAGGGGAGCATGAGCAAAATAAA--
------------------TCCGCGTCGTGCACCCCAGGG--CAAAG----------------------------------
--GTGATGCT-------------------------------------------------TGTCTGACGGTGGCCAGC---
---------------------------------GCCAGTTTGCTGGTGGAC
>Scalopus_aquaticus
ATCACTAGCCAAATCA----GCCTTTGAGGGTGGGACCAGAGA-----CTGCACTTTT---AAGAAGACCCCCAAGGCCA
GG-----------A-GGTATTGGGTGGGGGAACTGGCTGAAGGTGGCCAAAGGGCAT-AAACTTCCGGTGAT--GTGATA
TA-GAAATCCTGGGAATGTCATGTCCAGCATGGTGCCTGCAGTTAACACCTCTGTGTGGTGTATTTGAAAACTGCTAAGA
AAACAGATTCAAAATGTTTTCATCACAAGGGAAAAATC----------AGTTGTTGCTTTTTGTATCTCTGTGAGATGTT
GG--ATGT---TTAAGCT---CGCAGTAGGCATTTCACGGTATGG--GTAAGTCAAGTCATTATGCTA--CACCTGAACC
TTAG-ATGGTGCTTGCCAATGTCA-GTTACCCCAATAAAACTGGTGTGGGATGTGGAGAGGAGCATGAGCCAAATAAA--
------------------TTCGTGGCATGTGCCTCAGGGGAAAAAGGTGA---------------------------TGC
TTGTCTGAC--------------------GGTGGACTGGGCATCACACTGGTGACAGAG-GTCTGGCAAT-ACAGGCCCT
CCTCTTGTCAGAATG--CC-CAGCGGGGCCAGTGCCGGTTTGGCTGTGGTC
>Myotis_myotis
CACACTAGCCAAATCAAA--GTCCCTGGGGGTGGGGCCAGTGA-----GTACACCTAT---AAGAAGA-ACT-----CCA
GG------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------TGT
TTGTGATGCA-------------------GGTGGGCTGTGGACCACACTGTGGAGAA---GTCTGGTAATGGCAAGCTGT
CGGGTGGTCAGAACG--CA-CAATGGGAGGAGTGTCAGTTTGGTTGTGGGC
>Rousettus_aegyptiacus
CACACCAGCCAAATCAAA--GTGGCTGGGGGTGGGACCAGAGA---CTCTGCACCTGT---GAGAGGA-AAC-----CCA
GG------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------TGT
TTATGGTGCG-------------------GGTAGGCTGTGGACCACACCACAGGGCATCCGTCTGGTAACGGCGAGCCGT
CCGTCGGTCACAGCA-----CTGTGTGAGATGTGCCAGTTTGGTTGTGGGC
>Homo_sapiens
CACACCAGCTAAATTGAA--GTCTCTAGGGGTGGGCCTAGAGA---CTCTGCCCCTTT---GAGAAGG-ACC-----TGG
GG------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------TGT
TTGTGGTGCA-------------------GGTGATCTGTGGACCACACTATAGAGAAACCATCTGGTAATGGCAAGTTTT
CAGTGAGTCAGAATGCACA-CAGCATGAGGAATGTTGGTTTGTTTCTGGAC



Dog393_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------TTTTTCCAGCTTTATTGAGGTATAATTGAC---AAATAAAA-ATTGTAT
ATATTTAAGGTGTACAACGTGATGTTTTGATATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATAT
CCATCACCTCACATAGTTACCATTTTTTTGTGTGTGGTGAGAACACTTAAGATCTACTC---------------------
-------------TCTTAGCAAATTTCAA---------------------------------------------------
-----------------------
>Canis_familiaris
GGCA-CAAACTTTATCTAATTACTCTCTACTCTGAGCACTCTACTCACTTAAAAGATGTTTTTTGCATGTAAGGTTTCTG
ATGTAGGGAAGTAGCAATGAGTATGAGTGCATAAGCTATAGTAATATTTCTCAAACTTTAAT------------------
-----------GTTTCTCAA--ATTTTT----TT--CCAGTTTTATTGAGATATAATTGGC-----ATGCAGCACTGTAT
AAATTTAAGGTGTACAGTGTAATGATTTGAATTATAAAT--ACTGTGAAATGATTA--------------------ACAT
CCATCATCTCATATATACAAAT-----------------ATATATATATATATATATATATATATATACACACACACACA
TACACATAATACATATT---------------TGG-TCCTC----TTTT---TCAAAT-TGTGAAAGTTTGTTCACTTGC
AAAGTCTAGGGTCCTATGTACAG
>Felis_catus
AGCA----------------------------------------------------------------------------
------------------------------ACCAATTACAAGATTGCTTCTCCAACTTTAGC------------------
---ATA------------AT--GCTTTT----TT--CCAGTCTTATTGAGATATAATTGAC-----ATACAGCACTGTAT
AAGTTTGTGGTATACAGTATGATGA-TTGACTTACATAT--ATCATGAAATAATTGCCATCA-CAGGTT-----A-ACAT
CCATAATCTCATATAGGCACAC----------------AAAAAAGAAAAGAATATATATATATATATATATATATATATA
TATATATATATA-TGTT---------------CTT-TATTCCAACTTTT---TCAAAG-TGTG-CAGTTTGTTCACTTGC
AAAGCCTTGAAGTCTATGTATAA
>Manis_pentadactyla
GCTA-TAAGCTTCA-----------------------------------------------------------GTACCAA
ATGT--------------------------ACAAGCTATAGTAATATTTCTCAAACCTTAAT------------------
---GTAG---TGTTTATCAAACACTTTT----ATCTCCAGTTTTATTCTGATGTAATTGGC-----ATATAGCACTGTAT
AAGTTTAGGGTATATAGCATAATTATTTGACTTACATAT--ATTGTGAAATGATTACCACAA-TGAATTTAGCTA-ACAG
CCATTATCTCATATAGATACAA-----------------AAAAAGAAAAAAATGCATATAA-------------------
-------------TTTT---------------GGT-TTCTCAAACTTTT---GAAAAT-TGTGAAAGGTTTTCCACTTGT
AAAGTACAGGGTCCTACATACAG
>Sus_scrofa
GATA-CAATCCTCA-----------------------------------------------------------ATGCTAG
ATGT--------------------------ACAAACTATAGTAATATTTCTTAAGCTTTAGT------------------
---GTAG---TTTTTCTCCA--ACTTTT----CCC-TTAGGTTTATTGAGACATAAATGAC-----ATACAGCACTGTA-
AATTTTAAGCTGTATAA----------TGATTTATGTAT--ATCACAAAATGATTACCACAA-TAAGTTTA-------AT
CTATCATTTCATACAGATAACA-----------------AAAAAGATAAATATT--------------------------
-------------TTTT---------------TAT-TTCTCTAAATGTT---GTAAAC-TGTAAAAGCTTGTTTACTTGC
AAAGTCCATGGTCCTATATTCAG
>Tursiops_truncatus
GTTA-CATCTCTCA-----------------------------------------------------------GTGTCAG
ATGT--------------------------ACAAGCCATAGTAGTATTTCTCAAGCTTTAGT------------------
---GTAG---TGTTTCTCAA--ACTTTT----TTC-CCAGGTTTATTGAGATATAAATGAC-----AAAAAACCCTGTGT
AAGTTTAAGGTGTACAGTATAATGATTTGACTTACATAT--ATTGTGAAATGATTACCACAGTTAAGTTTAGTTA-ACAT
CTATCATTTCATACAGATAACA----------------AAAAAAGAAAAGAATATTT-----------------------
-------------TTTT---------------TAT-TTCTCAAACTTCT---GTAAAC-TGTGACAGCTTGTTTACTTGC
AAAGTCCAGGGTCCTACCTACAG
>Equus_caballus
GGTA-CAAGCCTCA-----------------------------------------------------------GTGCCAG
ATGT--------------------------ATAAGCCAGAGTTATAGTTCTCTAACTTTAGT------------------
---GTAG---TGTTTCTCCA--ACTTTT----CCCGCTAGTTTTCTTAAGGTATAATTGACATACAATACAGCACTGTAT
AAGTTTAAGGCGTACGGCGTACTAATTTGACTTATAT----TTAGTGAAATGATTACCACAA-TAAGTTTAGTTA-ATGT
CCATCAT-TCGTATAGACATAA----------AAAGAAGAAAAAGGAAAAAATGCCTATT--------------------
-------------TTTT---------------TGT-TTCTCATACTTTT---GCAAAT-TATGAAAGTTTGTTCACTTGC
GAAGTCCAGGGTCCTACGTGTAA
>Ceratotherium_simum
GGTA-CAACCCTCA-----------------------------------------------------------GTGCCAG
ATGT--------------------------ACAATCTGGAGTAATATTTCTCAAACTTTAGTAGTTTGAGAAACTACTAA
AAAAGTT---TGTTTCTCAA--ACTTTT----CCCCCCAGTTTTATTAAGATATAATTGACATACAATACAGCGCTGCAT
AAGTTTAAGGTCTACAGCATAATAATTTGACTTAT------ATCATGAAATGATTACCACAT-TAAGTTTAGTTA-ATGT
CCGTCAT-TTATACAGATACCA---------------AAGAAAAGAAAAAAATACATATT--------------------
-------------TTTT---------------TGT-TTGTCAAACTTTT---GCAAAT-TGTGAAAGTTCATTCACTTGC
GAAGTCCAGTGTCCTATATTTAG
>Myotis_myotis
GGTA-TAACCCTCA-----------------------------------------------------------GAGTCAG
ATGT--------------------------ATGAGCTATAGTAATATTTGTCACACTTTAGT------------------
---GTAG---TGTCTCTAAA--AGTATT----TTT-ATAGTTTTATTGAGATATAATTCAT-----ATACAGTGCTATAT
AAGTTCAAGGTGTAT-GCATAATGATTTTACTTACATAC--ACTGTATAATGATTACCACAA-TAAATTTAGTTA-AAAT
CCATCATCTCATCTAGATACAA-----------------AAAAAATAAAAAATGTGT-----------------------
-------------TTTT---------------TGT-TTCTCAAAGTTTT---ATTAAT-TGTTAAAGTTTATTTATATGC
CAAGTTCAGGGCACTATATACAG
>Rousettus_aegyptiacus
GGGA-CAACCCTTC-----------------------------------------------------------GTGCCAG
ATGT--------------------------ACAAGCTATAGTAATATTTCTCAAACTT----------------------
----TTG-----------------------------CTAGTTTTATTGAGGTATAATTGGC-----ATACAGCACTGTAT
AAGTTTAAGGTGTACAGCAGAACAATTTGACTTACATAT--ATTGTGAAATGATTACCACAA-TAAGTTA------ACAT
CTATTATCGCATATAGATATGA----------------------AACAATTGTACATATT--------------------
-------------TTTC---------------TGT-TTCTCAAACTTTT---ACAAAT-TGTGAAAGTTTGTTTACTTTC
AAAGTTCAGAGTCCTACATATAG
>Condylura_cristata
GGAT-TAAACCTCA-----------------------------------------------------------CTGCCAG
ATGTATAGTA-----------------CAGATGTACTATAGTAACATTTCTCTAAATT----------------------
----TAG-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------TG--TTCCAAAACTTTT---GAAATTGTATGAAAGTTTGTTAACTTAT
ACAGTCCAGGTTCTTATACATAG
>Uropsilus_gracilis
GTATATAAAT----------------------------------------------------------------TGCCAG
ATGTACAA--------------------------ACTATAGTCATATCTGTCAAATTT----------------------
----GAA-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------TGT-TTCCTAAAATCTT---GAA--T-TATGAAAGTTTATTCATTTGC
AGGTTTCAGGATCTTACATATAG
>Homo_sapiens
AGTA-CAAACTTCA-----------------------------------------------------------ATGGTAG
ATGT--------------------------ACAAGCTATAGTAATATTTCTCACAATTTAGT------------------
---ATAG-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------TGTTTTCTCAAACTTTT---TCAAAT-TATGAAAGTTTCTTAACTTCC
AAAATCTAGGGTACTCTATATGG



Dog395_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
----------------------------------------------------------------TTTTTCCAGCTTTATT
GAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGT----ACAACGTGATGTT-------TTGATATACGT---
---------------------ATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAG
TTACCA---TTTTTTTGTGTGTGGTGAGAACACTTAAG------------------------------------------
---------------------------------
>Canis_familiaris
AATTATTGTTAT--------------------------TAATAATCCTATTGATTTGTAGGAAACCTT------------
-----------------------------------TTGCT----------------TTTTT--------CTAGTTTTATT
GATACATAATTGACAT---AAAATTGTA-----TTAAAGTAT----ATAAAATAGTGAT-------TTGATAT-TGT---
---------------------GTATATTGTGAAATGATT------GTAAGTTTAGTTAAC--ATCTATCACCTCATATAG
--ACAACTTTTTTTTTTATTGTGATGA--------------TTAAGTACTTTTT---GCTTAATTTTTTTTTTCACCTAG
TTTGCTTTC-CTTTTTAGACTGAATCTGGATAT
>Felis_catus
AATTTTTGTTA---------------------------CAATCACCTTATTTATTTATGGGAAAC-TT------------
-----------------------------------TTGTTTGCTC---TTAAGTGTTTTTT--------CCAGTTTTATT
GATATATAATTGACATGT-GACATTGTA-----TTAAAGTGT----ACAACGTAATGAT-------TTGATATATAT---
-----------------------GTATTGTGAAGTGAATATTGCGATAAGTTTAGTTAAC--ACCCATTACCTCAC--AG
TTACAA--CTTTTTTTTCTTGTGATAA--------------TGAAGTATTTTTT---ATTTAA-CTTTTTTTTCACTTAG
TTTACTTTC-TTTTTTAGACCGAATCTGGATAT
>Manis_pentadactyla
AATTACTGTAA----------------------------AATAGCCTTACTAATTTGTAGGAAAATTT------------
-----------------------------------TCATGTTCTC---TTAAGTATTTTTT--------CCAGTTTTACT
GATACATAATTGACATGT-AGCATTGTATTAGTTTAAAATGTACATACAACATAATGGT-------TTGATATAAGT---
---------------------GTA-ATTGTGAAATTA-TACCACAACAAATTTAGTTAAT--ATCAATCACCTCATATAG
TGACAA------TTTTTTGTGAGATGT--------------TTAAGTATTTTAA---ATTTAC--TGTTCTTTCACATAG
TTTACTTTT--TTTTTAGACTGAATCTGGATAT
>Sus_scrofa
AGTTATCA------------------------------CAGTAACC-----------TAGGAAAAATT------------
-----------------------------------TTGTTTTCTC---TTAAGTA-TTTTT--------CCAGTTTTGTT
GAGATATAATTG----GT-AACATTGTATCAGTTTAAGGTTT----ATAACATAATAAT-------TGGATAC-------
-------------------------------------------------------TTAAC--ATCTACCACCTCACATAG
TTAAAAAAAATTTTTTTCTTGTGATGA-------------------TATTTTTT---ATTTCC---TTCTTTTCATGTAG
TTTACTTTA-CTTTTTAGACTGAATCTGGATAT
>Tursiops_truncatus
AATTATTGTTACGGTAACCTTAACAAAAAATTTTTTTGCAGTAACCTTATTAATTTATAGGGAAACTT------------
-----------------------------------TTGTTTTCTC---TTAAGTA-TTTTT--------CCAGTTTTATT
GAGATATAATTGATATAT-AACATTGTATTAGTTTAAGGTTT----ACAGCATAATTAT-------TGGATATATGT---
---------------------ATATATTGTGAAAGGATTACCATAGTAAGTTTAGTTAAC--ATCCATAACCTCACGTAG
TTAAAA--AGTTTTTTTCTTGTGATGA--------------TTAAGTATTTTTT---ACTTAA---TTTTTTTCATGTAG
TTTACTTCC---TTTTAGACTGTG-------AT
>Equus_caballus
AATTACTGTTA---------------------------CAATAACCTTATTAATT-ATAAGAAAACTT------------
-----------------------------------T---TTTCTA---TTAAGTATGTTTT--------CTAGTTTTATT
GAGATATAATTGATGTAT-AATATTGTATTGGTTTAGGGTAT----ACAGCATAATGAT-------TTGATATGTGT---
---------------------GTATATTATGAAATGATTACCACAGTTAAT----TTAAC--ATCCTTGGCCTCAC--AG
TTACAA---ATTTTTTTCTTGTGATGA--------------TTAAGTATTTTTT---ATTTAA---TTTTTTTCATGTAG
TTTACTTTC-TGTTTCAGACCGAATCTGGATAT
>Tapirus_indicus
AGTTATTGTTA---------------------------CAATAACCTTATTAATTTATAGGAAAACTT------------
-----------------------------------TTGTTGTCTC---TTAAGTATTTTTT--------CCAGTTTTATT
GAGATATAATTGACATAT-AACATTGTATTGGTTTAAGGTAT----ACAACATAATGAT-------TTGATATGTGT---
-----------------------ATGTTATGAAATGATTACCACAATAAGTTTAGTTAAC--ATCCATCACCTTAC--AG
TTAACA--GATTTTTTTCTTGTGATGA--------------T----TATTTTTT---ATTTAA---TGTTTTTCATGTAG
TTTACTTTC-TTTTTCAGACTGAATCTGGATAT
>Myotis_myotis
AGTTTTTA------------------------------TAACAGCCTTATTACTTTATAGGAGAACTC------------
-----------------------------------TTGTTTATTC---TTAAGTA-TTTTT--------CCAGTTTTATT
GAGGTACAATTAACATAT---TCTAGTAGCAATTTAAGGTGT----ACAACATAATGATTGTAGCATTTATATATGTCAG
CAGGGTGTACAACAAGCACACATATATAGTGAAGGGATT---ACAATAAGT----TAAAC--ATCTATCATCTCACACAG
TTACAA-----TTTTTTCTTGTGATGA--------------TTAAGTAGTTTTT---CTTTAATTTTTTTTTTCATGTAG
TTTACTTTC-TTTTTTAGACTGAATCTGGTTAT
>Rousettus_aegyptiacus
AATATTTA---------------------------------TAGTCTTATTGACTTGTAAGAAAACTT------------
-----------------------------------TTGTTTCCTC---CTATGTACTTTTT-----------GGTTTATT
GAGCTATAATTAACGTAT-AACCTTGTATTAGTTTAAGGGAT----ACAACATAATGAT-----------TATATGT---
-------------AGTTGCACATATAGAGTGAAATGATTAGGACAATAAGTTTAGGTAAC--ATCTATCACCTTACAAAG
TTACAG----TTTTTTGTGTGTAATGA--------------TTAAGTATTTTTT---TCTTTA-----ATTTTCACGTAT
TTTACTTTC-TTTTTTAGACTGAATCTGGTTAT
>Condylura_cristata
AATTGTTA------------------------------TGTTTACCATACCAGTTTGTAGGGAAACTT------------
-----------------------------------TTG-ATTCAC---TT-------TTTA-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------ATTTAA--TTTTTATTCATGTAG
TTTGCTTTCTTTTTTTAGACAGAATCTGGATAT
>Sorex_araneus
AATTATTGATA---------------------------TACTAACC-TAACAATTAAGAGTATAACTTTTATTATTTCTT
AAGTAGTTTTTAGGTTTTGTTGCTTTTGGGGTTTTTTT-GTTTGT---TT-------GTTT-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------GTTTGT--TTGTTTTTCATGTAG
TTTACTTTC-TGTTTTAGACTGAATCTGGATAT
>Homo_sapiens
AATTGTTA------------------------------TAATAACCTTGTTAATTCATAGGAAACCTT------------
-----------------------------------TTGTTTTCTC-----AAGTATTTTTT-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------ATTTAA--ATTCTTTTCACATAG
TTTACTTTT-TTTTTTAGACTGAATCTGGATAT



Dog400_LINE

>L1_CARN7_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--CAGAGAAAGACAAATACCATATGATTTCACT-TATATGTGGAATCTAAAAAAC----------------------AAA
ACAAATGAACAAAAAAAA---------ACAAACCAAA------CAGACTCATAGATACAGAGAACAG---ATTGGTGGTT
GCCAGAGG--GGAGGGGGGTTGGGGATGGGT------GAAATGGGTGAAGGGGGTCAAGAGGTACAAACTTCCAGTTATA
AAATAAATAAGTCATGGGGATGTAATGTACAGCATGGN-GAATATAGTCAATAATATTGTA-------------------
----------------------------------------------NTAACNTTGTATGGTGACAGATGGTAACTAGACT
TATTGTGGTGATCACTTCACAATGTATACAAATGTCGAATCACTATGTTGTACACCTGAAACTAATATAACATTGTATGT
CAATTATACTCAAAT------AAAAAAA----------------------------------------------------
--------------------------------------
>Canis_familiaris
ATCATGTGGAGTGAT----GGAAAGGTGAGTAGAATCGAGAACACTAGGAATTT---AAAAGTACACA-TTAGAA---GT
TCTCATCACATACATAAA------TTTATAACTATGTATGGCGATGGATATT--AAC-AAGATTTCTTGTGACGATTATT
TCCAAATATGTACAAACATTGAATCAGTATATTGTATATCTG-AAACTAATATAC---------CTGCTATAAGTCAAAT
ATACCTAAATTGAAAAAATAAAATAAAATCAACAAAAAGA---GCAACTTAGGGATACAGAT-------------TGGTT
GCCATGGGC---------AATGGTAGTCAT-------GGCATGGGTGAAGAGGGTTAAAAGGTACAAACTCATAGCT---
--ATGGATAAGGCCTGGAGACATAATGTATGGCAGGAT-GACT-------------------------------------
------------------------------CAAGAAAAA---GGATGTAACT--GTGTGGTGACAGATGTTAACTTTACT
AATGGTGTTATT---TTCACAATATATACAAAT-----ATCACTATGTTGTACACCTGAAAC----ATAATGTTGCATGT
CAATTATATCTAAATTTTTACAAGGGGAATAAGAGGACAAA---AAAATACACGTTTGGGA---GTTAGACATGACTTTT
--CTCATATCTTGACTCTGCT--GCTGTCACTTTAATC
>Felis_catus
ATCATGTGGGGTGAT----GAGAAGCTGATTAGAATGGAAACGAATAGGAATTT---AAAAGTACACA-CTGAAA---GT
TCTCATCACATACACACACACACATCTGTGACTATGTATGGTGATGGATATT--AAC-TAGATTTGCTGTGGTGATTATC
TCTGAATATGTACAAATGTGGAACGATTACATTTTACACCTG-AAACTAACATA----------CTGTT-TATGTCAAAT
ACACCTAAATGAAAAAAAAATAAAATCGTAACCAAAAAAAG--CAAGCTTATGGATCT-------GG---ATTGGTGGTT
GCTAGTGGC------CAGAGTGGTAG----T------GGAATGGATGAAGGGAGTTAAAA--TGCCAACTTCCAGTT---
--ATAAATAAGCCATGGAGATGGAATGTATGGCAGGGT-GGCTATAGTTCTTGATACTGTGTTGTGCATTTGAAAGTTGC
TGAGAGAGTAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>Manis_javanica
ATTATGTGGAGGGAT-GGTGAGGAGGAGGATA-----GAGACCAATAGGAATTT---AAAAGTACATA-TTTAAA---GT
TCATATCATGAGAAAAAA------ATTGTAATTATATATGGTGAC--ATGTT--AAC-TAGACTTACTGTAGTAATTATT
TCATAATATATATAAACATTGAATCATTATGTTGTATACCTG-AAACTGATAC---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TATATA
TAATTATATCCATGTTTTTATAAAGGGG----------GGA---AAAGTACATGTTTGGGA---GTCAGACGTAAGTTTT
---TCATATCTTGGCTCTGCC--TATGTGACTTTGAAC
>Sus_scrofa
CGTGTA-GGGATGCT-GAGGGGGAGGTGGTCAGAATAGAGACTAATAGGAATTT---AAAA-TACATATTTTGAA---GT
TATCATTACAAGAAAAAT--TAATTTTATAACTATGAGTGGTGACA-GTGTT--AACATAGACTTACTCTGGTGTCCCTT
CTACAACATACACAAATATCTAATTA--------------TG-AGGCTGACCT-----------TTAATATGTAGCAATT
GTAA-TCAGTGAAAACAAA------------------------CAAGATGACGGGTACAGAG-GCAG---ATTGATGGTT
GCCAGAGGCAGAGGGTGGGG-----------------GAAGCAGATAAAG------------TGCAAACTTCCAGCTATA
AAATAA---------------GTAATATGCAACATGGC-AACTATACTTAATAATACTGTATTGTACACTTGCATGTTGC
TGAAAAAGTAAGTTTTAAAGGTTCTCATCACAACGAAAAAT-AATTATAACTGTGTATAGTCATGGATGTTAACTAGACT
TATTTTAGTGATCACTTTGTAGGACTTGGAAGTTTGAAATCATTATTTTGTACACCTGAAATGAATATAATATTCTATGT
CAATTATATCT--GTTTTTTAAAAGAGGAAA-------------AAAGTACATGTTTGGGA---GTCAAACAATATTTTA
---ACTTATCTTGGCC-------TATGTGACATTAAAC
>Bos_taurus
GTCATGTGGGGTGCT-GAGGAAGAGGTAGGTAGAAT--AAACCAGTAGGAATTA---AAAAG-ACATGTTTAAAA---GT
TCTCATTACAAGAAAAAA--TAATTTTGTAACTATGTATGATGACA-GTGTT--AAC-TAGAGTTACTGTGGTGTTCATT
TTGCAATATATATAAATATCTAATCAATA-GTTTTACACCTG-AAACTAA------------------TATATGTCAATT
ACAACAAAATAAAAACAA---------ATAATCAAAGGG-------GGTGATGAATACAGAGAACAG---ATTGGTAGTT
GCCAGAGGTGGGGTGGTGGGTAGTGGTGGGTGTTGAAGAAATGAGTTAAGGATGTTAAAAAGTACGAGCTACCATATATA
GAGCAA---------------GTAAAGTACAACATGGC-AACTAAGGTTAATAATACTGTGTTGTATATTTGAAAGTTGC
TAAAAGAGTAGATTTTAAAAGTTTTCATCACAAGAAAAAATTGTTCACA------TACAGTGATGGGTGTTAACTAGACT
TATTGTAGAGATCATTTTGGAGTACATACAAATGTCATATCATTATTTTGTATATCTTAAACTA----AATGCTGTATGT
CAATTATATCTTTTTTTTTTTTAAAGGAGGGGAA----------AAAGTACATGTGTGGGA---GTCAAACACAGCATTT
--TACTTGTCTTGACTCTGCC--TATGTAAGTTTAAAC
>Equus_caballus
ATTTTGTGGGATGAT-GGGGAGGAGGTGGGTAGAATAGAGATCAATAGGAAGAT---AAAAGTACACA-TTAAAA---GT
T---ATAACAAAAAAAGT-------TTGTAACTATGCATGGTGACGTATGTT--AAC-TAGACTTATT---GTGATAATT
TCACAATATATGCACATATTGAATCACT--GTTCTACACGTGTAGGATATTATACACGTGTAGGATATTATATGCCAATT
ATACCTCAATAAAAACAAAA-------ACAAACAAAAAGATACCAAGCTCGTGGATTCAGAGAACAG---ATTGGTCGTT
GCCAGAGGTGTGGGGTGGAGTGGTGGGGAGT------GAAATGGATAAAGAGAGTTCAAAAGTATAAACTTCCAATTATG
AGATGAATAAATCATGGGGATGTAATGTACAGCATGGCTGACTGTAGTTAATAATACTGAGTTGTCTATATGAAAGTTGC
TGAGAGAGTAGATCTTAAAAGTTTTCAGCACAAGAAAAAAATTTTTGTAACTATGTATGATGATGGATGTTAGCTAGACT
TATTATGCTAATAATTTCACAATATATACAAATATCGAACCATTATGTTGTATACCTGAAACTAACATAACGTTATATGT
CAGTTTCATCTAAATTTTTCAAAAGGAGAAA-------------AAAA--------GGGGA---A---------------
-----ATATCTTGGCTCTGCC--TTTGTGATTTTAACC
>Tapirus_indicus
ATTATGTAGGTTGTT-GGGGAGGAGAGGGGTAGAATAGAGACCAATAGGAATTT---AAAAGTACACA-TTAAAT---GT
TCTCATCATAAGAAAACA---AAATCTGTAACTATGTATGGTGACAGGT--T--AAC-TAGACTTATTGTGGTGATCATT
T-----------CACATGTTGAATCATTTTGTTTTACACTTG-AAGCTAATATA----------ATGTTATATGTCAATT
ATACCTCAAGAAAAACAAAA-------ACAAGCAAAAAAATACCAAGCTCATGGATATAGAGAAAAG---ATTGGTGGTT
GACAGAGGTGTAGGGTGGGGTGGTGGGGGAA------GAAATGGGTGAAGGGAGTTAAAAAGTGCACACTCCCAATTATA
AGATAAATAAATCATGGGGATGTAATGTACAGCATGGT-GACTATAGTTAATAATACTGTATTGTGTATTTGAAAGCTTC
TGAGAGAGCAGATCTTAA--GTTTTCAGCACAAGAAAAAAA-TTTTGTAACTATGTATGATGATGGATGTTAACTAGACT
TATTATGCTAATCATTTCAAAATATCTACAAATATTGAATCATTATGTTGTACACCTGAAACTAATATATCATTATATGT
CAATTATGTCTAAATTTTTAAAAAGGAGGAA-------------AAAGGGTATGTTTAGGA---GTCAGACATACCTTTT
--TCCATATCTTGTCTCTGCC--CATGTG-CTTTCAAC
>Myotis_myotis
ATTAT-----------GGGGAGAAGGTG----------AGACCAATAGGAATTA---AAAAGTATATG-TTAAAT---GT
CCTCGTCTCAAAAAAAAA-------TTATAGCTGTGTCTGGTGATGGATGTA--AAC-TAGGTTTATT---GTGATCATT
TCACAATATACATAAATATTAAGTAATTATGTTGTACATCAG-AAACTAACATA--------------------TCTATT
ATACCTCAATTTGAAAAA-------------------------TGAGCAAATGGAATCAGAGAACAGATTATTGGTGGGT
GCCAGAGGTTGGGGGAGGGAAGGC-------------AAACTGGGTGAAAAGGGTTACAA--TACAAACTTCTTGCTGTG
AAATAAATATGTCTTGGGAATGTAATATGTAGCATTAC-GTTTAT-GTTCATAATACTGTATGGTATATTTGAAAATTGT
TCGGACAGTAGATCTTAAGAGTTCTCATCACATGAAGAATG-ATTTGTAACTCTGTGTAGTGATGGATGTTAACTAAACT
TATTGTGGTAATCCTTTTGCAATATATACAAATATCAAAATATTATTTTACACACCTAACACCAATATGATGTTGCATAA
CAATTATATCTAAATTTTTTAAAAGGGA----------------AAAATACAT-TTGGGGG---GTCAGAGATACCTTCT
-TTTCATGTCTTGGCTCTGCC--TATGTGACTTTAAAC
>Rousettus_aegyptiacus
ATTACATGGCATGAC-GGGGAGAAAGTAGGTACAATAGAGACCAACAGGAGTTA---ACAAGTATACA-TTAAAA---GT
TTTTATTGCAAGAAAAAA------AATGTAGCTACATTTGGTGATGAATGTTAAAAC-TAGCCTTATTGTGGTGATCCTT
TCACAATATATGCAAATATTAAATTAT---GTTGTACATTTG-AAACTAAT-------------GTTATATATGTTAATT
ATACCTCATTTTAGAAAATA-----------------------AAAGCTCATG-CTACAGAGAACAGACTATTAGTGGTT
GCCAGAGGCAGGGTGAGAGTAAGTCGAGGC-------AATATGAGTGAAGGGGGTTAAAG--TACAAACTTCCAGCTATA
AAATAA----GTCATGGGTGTGTAATATACAATGTGGC-AACTATGGTTAATAA------ATCGTATATTTGAAAATTGC
TAAGAGAATGGATCTTAAAAGTTTTCTTCACATGAACAA---TTTTGTGACTAGAT---GTGATTGGTGTTAACTAAATT
TATTGTGGTAATTCTTTTACAATATATACAAATATCAAATCATTTTATCATGTGCCTGAAACTAATATA---TTGCATGT
CAACTATATCTACATTTTTTTGAAAGGGGA--------------AAAATATATGTTCGGAA---GTCAGACATACCTTTT
--TTCATATCGTGACTCTGCC--TATGTGACTTTAAAC
>Condylura_cristata
AAAATGTAGATTTTTGGGGGAGGATGTGGGTATAGTGCAG-------GAATTAA---AAAAACTCATGTTTATGA-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------ATCTAA----------
--TTCATATCTTGGCTCTGCCTGTATGTGACTTTAAGC
>Erinaceus_europaeus
ATTATGTGGG-TGAT-GGGGAGACAATAG-TAGAACAGAGCCCAGTAGGAGTTA---AAACATCAATGTATGGCT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------GTCAGAGATATATTTT
-TTTCATATCTTGAATA------CATATAACTTTAAGT
>Homo_sapiens
ATCGTGAGGAGTTTT-TGGGAGGAGACAGGTAGAGTAGAGATCAGTAGCAATGA---AAAAATACATATTTCGGA-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------GTCAGATAAACTTTTT
CCCCCACATCTTGGCTATACC--TATGTGAC--TAAGC



Dog401_LINE

>L1_CARN7_3END
--------------------------------------------------------------------------------
TTTTTTT---------------ATT-----------TGAGTATAATTGACATACAATGTTATATTAGTTTCAGGTGTACA
ACATAGTGATTCGACATTTGTATACATT-GTGAAGTGATCACCACAATAAGTCTAGTTACCATCTGTCACCATACAA---
----------------------------------------------------------------------
>Canis_familiaris
AAATA-TAACACATGTAAGGTAAAATGTT-AAGAGACATTCTTTTATTTTTG---TCC----GCATTCTT---TTTAAAA
ATTTTTC---------------ACTTT------ATCAAGGTATAGTTGACATATAACATTACATTAGTTTCAGGTATATA
GCATAATGCTTTGGTATTTGCATAAATA-GCAAAATGATCACCAGAGTAAG-----TTAACG------------------
TCCCGGCATTCTC---AAATGTGTTAT--GCAAAGA-TTCCCTATCATCTAGCGATATCCATTCAGTATT
>Felis_catus
GAACA-TAACGTGCGGAAGGTAACATTTT--ACAGACATTCTTTTATTTCTG---TCT----GCAATCTT---AATAATA
AGCTTTTTAAATAATAAGAACCCTTCTTATCTTATCAAGGTATATTTGACATATAACATTATACTAATTTCAGATGTACA
ACAGAATGA-TTGGTATTTGTACAAACT-GCAAAATGATCACAAGAA---GTCGAGCTAACA------------------
TCCTGGCATTCTC---AAATGTGTTAT--GCAAAAA-TTCCCTACCACCTAGCAATCTCCGCTCACCATT
>Manis_pentadactyla
GGACA-CAGTTTGTGGAAGATGAAATGTT------ACATTCTTTTCTTGTTG---TTT----GCATTCTC---TTAACTT
TTTGATT---------------TTTTTTAAATAAAGGAGGTGTAATTGCCATATAACATTATG-----TTCAGGTGTACA
ACATAATGATTTGATATTCATATATATT-GCAAAATGATCACCACAGTTAAGTCA---AACA------------------
TCCAGGCATCCTC---AAATATGTTAT--GTAAAAACTTTCCTATAATCTAGCAATCTCTACTTCATATT
>Sus_scrofa
GAACA-TAAATAGTGGGAGCTAAAATTTG-----CACAGTCTTTAGCTTTTG---TCTGATAGCATTCTC----------
TTTTTAT---------------TTTTTTAAAAAATTACGGTATAATGCACAGATAAC-----ATCAGTTTCAGGTGTGGG
GCATAATGATCTGATATTTGTATATACT-GCCAAATGATCACTATAG---------TGAACA------------------
TCTGAGCACTCTC---AAATATTTTAT--GCAAGAG-TTCCCAACAATCTAGCAATTTCTACTTAATAAA
>Bos_taurus
GAACA-GAACTTACGAAAGGTAAAACTTT--ATAGACAATCTTTTACTTCTG---TCTGACAGCAGTCTC---TTTTTAT
GCTTTTATTATGTGT-------ATTTTTAA---ACTGTGATACAATGAACATATAACAGTATGTTAGCTTCCAGTGTATG
GCATAATGACTTGCTATTTGCATATATTCTCCAAGTGATCAGCACAGGAAGTGTAGCTGACA------------------
TCTGTGCATGCTC---AAATACACTGG--GCCAAAG-TCCCCAACACTCTAGCAACTTCCACTTAACATT
>Equus_caballus
GAACA-TAACTTGTGGAAGGTAAAATTTG----AGACATTCTTTTATTTTTG---TCT----GCATTCTC---TTTCCTT
CTTTCTT---------------ATT-----------GAGGTGTAACTGACATATAAC---ATATTAGTTTCAGGGATACA
ACATAATGATTCGCTATTTGTATATCTT-GTGAAATGATCACCATAGTAAGTCTAATCAATA------------------
TCTGGGTATTTTC---AAATACGTTAC--GCAAAAG-TTCCCTAAAATCTAACAATCTCCACTTAATATT
>Ceratotherium_simum
GAACA-AAACCTGTGAAAGGTAAAATTTT----ACAGATTCTTTTATTTTTG---TCT----GCATTCTC---TATATTT
CTTTTTT---------------GTT-----------GCGGTGTAATTGACATATAACATTATACTAGTTTCAGGTATACA
ACATAATGATTTGATATTTGTATATGCT-GCGAAATGATCACCACAGTAAGTCTAGTTAATA------------------
GCTGGGCCTTCTC---AAATATGTTAT--GCAAAAG-TTCCCTACAATCTAGCAATCTCCACTTAATATT
>Myotis_myotis
AAACA--AACATATGGAAGATAAAATTTT------ACAATCTTTTATTTTTG---TCTGACAGCATTCCT---TTTTCAT
GTTTTAT---------------CTTTTCAA------GAGGTGTAATTGACATATAACATCATATTAGTTTCCAGTGTAAA
ATATAACAATACAGTATTTGTACATATT-GCAAAATAATTACCACAATTAACCCAGTAAACA------------------
TCTGGACATTCTC---AAATATGTTAT--GCAAAAG-TTCCCTACAATCTATTAATATCCATTCAATA-G
>Rousettus_aegyptiacus
AAACA-TAATTTATGGAAAGTAAAGTTT---------AATCTTTTATTTTTT----------------------------
---------------------------------ATTGAGATATAACTGAC--ACAATATTATATTAATTTCTGGCATACA
ACACAATGATACAGTATTTGTATATACT-GCAAAATGATTACCACAA-TAAGTC-----ACA------------------
TCCAGGCAGTCTC---AAATATGTTAT--ACAGAAG-TTCCCTACAATCCAGTAATATCTACTTAACA-T
>Condylura_cristata
GAACA-TAAC--------------------------------TTTATTGTTG----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
ACT--GCATTCTC---AA-------AT--GCCAAAG-TTCCCTATAATCTAGAAATA-----TTAACGTT
>Uropsilus_gracilis
AAACA-TAACTTGTAGAAGGCAAAACTTT------ACATTCTTTTATTTTTG----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TCT--GCATTCTC---AAATATGTTATATGTCAAAG-TTCCCTATAATCGAGAAGTA-----TTAATGCT
>Homo_sapiens1
GAACGTTAAGTTGCGGAGGATAACATTTGACACAGACATTCTTTC-TTTGTG----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TCT--ACATTCTC---GAGTACAGTAT--GGACAAG-CTCCCTACGGTCAAGCAATATCCACTTCATATT
>Homo_sapiens2
GAACGTTAAGTTGCGGAGGATAACATTTGACACAGACATTCTTTC-TTTGTG----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TCT--ACATTCTC---GAGTACAGTAT--GGACAAG-CTCCCTACGGTCAAGCAATATCCACTTCATATT
>Homo_sapiens3
GAACA-TAATTTGTAGAAGATAAAATTTGACACAGACATTCTTTTATTTGTA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TCT--GCATTCTC---AAGTACATTAT--GGACAAG-TTCCCTACAATCAAGCAATATCCACTTCATATT
>Homo_sapiens4
GAACGTTAAGTTGCGGAGGATAACATTTGACACAGACATTCTTTC-TTTGTG----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TCT--ACATTCTC---GAGTACAGTAT--GGACAAG-CTCCCTACGGTCAAGCAATATCCACTTCATATT



Dog403_LINE

>L1_CARN7_3END
--------------------------------------------------------------------------------
----------------------------------TTTTTTTATTTGAGTATAATTGACATACAATGTTATATTAGTTTCA
GGTGTACAACATAGTGATTCGACATTTGTATACATTGTGAAGTGATCACCACAATAAGTCTAGTTACCATCTGTCACCAT
ACAANG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------
>Canis_familiaris
TTATCCTTT-AAATTGTCTGCATGTTAATCAACAAAGTCATAGAACAAACACTTTTAGT-TGTTAA---TTACTACA---
-----------------GATTGATTGATT---GA-----GTATTGAGGTATAATTGAAACA---CATTATATTAGTTTCA
GGTGTACAACATAATGATTTCATATTTGTACATATGGTGAAATGATTACCATAGTAAGTCTACTTAATATCCATCAGT--
---------CCACTCCAGTTTTGTTATTTCTT---GATGCTTGTAAGACTACTTTCAAAATTTGCAACAAA---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------TGAAAAGA-GTGTGT
>Felis_catus
TTATA----------------ATGTTGATCAGCAGAATCACAGTG----------------GTTAA---TCACTCCAGAT
TGACTGATTGATTTTTTTATTTATGTATT---TA-TTTATTAGCAAGGTATAATTGACACATAAC---ATATTAGTTTCA
GGTTTACAACATAACGATTTGATATTTGTACATATGGTGAAACATTCACCATAATAAGTCTAATTAACATCTGTCACT--
---------CCACTCCAGTTTTCTTATCTCGT---GATGTTTGTAAGACTACTTTTAAAATTTGGAACAAG---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------TAAAAAAAGAATTAT
>Manis_pentadactyla
TTACCACTA-AAGTTGTCTGCATATTGATCAGCAGAATCACAGTACAGATACTT------TGTTAA---TCACTCCA---
-------------GTCTTATTTATTTAAT---TT------CATTGAGTCATAATTGATATATTACAT----TTAGTTCCA
AGTG--------AATGATTTGCTATTTGTATATTTTGTGAAATGATCACCAC----AGTCTAGTTAACATCTTTCACT--
---------CCCCTCAAGTTTTATTATTACTT---GATGCTTGCAAGATTCCTTTAAAAATTTGAAACAAG---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------TGAAAGTA-ATTTGT
>Sus_scrofa
GTGCCATTC-ATATTATCCACATATTGATAAAGAGGATTACAGAAGTGACATTTCCCGTCTGTTAT---TTACTCAT---
-----------TTATTTTATTTATCTATT---TT--TTGAAATTGAGGTATAATTGACACATAATATTATACTAGTTTCA
GGCACACAACATAATGTTTCAATATCTGTATATACTACAGAATGATCACAAACATAAGTCTAGTTAACATCCATAACT--
---------TCACCCCAGT-TTATTATTCCCT---GATGCTTGTAAGATTACTTTTAAATTTTGGAACAAG---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------TGAAAATA-ATTTAC
>Bos_taurus
TTGTCATTC-ATATTGCCTGCACACTGGTCAGTAGGATCACAGAACACACAGCTCTAGTCTGTTAA---CCACACAA---
---------ATGTATTTTGTTTATTTATA---TA-TTTTAAATTGAAGTACAATTGATATATAACAGTATATTAATTTCA
GGTATACAACATACTGATTCAATATTAGTATACATTACAAAGTGATCAAAGCTATAAGTTTGGTTAACTTTTATCACT--
---------CCACTCCAGTTTTATTATTACTT---AATACTTGTAAGATTACTTTTAAATTTGGGGACAAT---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------TGAAAAGA-ATTTAC
>Equus_caballus
TTATCATTC-AAATTGTCTGCATAGTGATCAGCAG-------------ACACTTCTAGTCTGTTAA---TCACACGA---
-------------ATATTATTTATTTATT---TATTTTTATATTCAGATATAATTGACATATAGTATTATATTTGTTTCA
GTTGTATAACACAATGATTCGATATTTGTATATATTGTGAAATGATGACCACAATAAGTCTAGTTAACATCCATCAATAA
TA-------AAACTTCAGTTTTATTATTACCT---GATGTTTGTCAGATTACCTTTAAAATTTGGGACAAG---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------TAAAAGTA-ATTTAT
>Ceratotherium_simum
TTACCATTC-AAATTGTCTACATATTGATCAGCAA-------------ACACTTCTAGTCTGTTAA---TCACTC-----
-------------GTTTTATTTATTTATT---TA---TTATGTTGAGGTATAATTGACATATAACATTATATTAATTTCA
GTTGTACAACATAGTGATTTGATATTTGTATGTATTGTGAAACGATCCCCACAATAAGTTTGGTTAACATCCGTCACT--
---------TCACTTCAGTATTATTATTACTT---TATGCTTGTAAGATTACTTTTAAAATTTGGAACAAG---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------TAAAAAGG-ATTTAT
>Myotis_myotis
TTATCATTC-AAATTGTCTTCATATTGATCAGCAGAATTCCAGGCCAGACACTTCTAGTCTGTTAA---GCACTCAA---
-------------GTTTTATTTATTTATT---TTGTTTTAAATTGAGGCATATTTGACATATAACATTTTATTAGTTTAA
GGTGTACAACCCAATGATTTGATATTTGTATATATTGCAAAATGATCACCACAGTAAATCTACTTAACTTTTATCACT--
---------CCATTGCAGTTTTATCACTATTT---GACACTTGTCAGTTTATTTTAAACATTTGGAAAAAG---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------TAAAAATA-ACTTAT
>Rousettus_aegyptiacus
TTATCATTC-AGATTGTCTGCATATTGATCAGCAGAATCACAGAGC--ACACTTCTAGTCTGTTAA---TTGCTCCA---
-------------GAATTTATTATTTATT---TA----TAAATTGAGGTATAATTG--ATATTACATATTGTTAGTTTTG
AGTGTACAACATAAGGATTCAATATTTGTATATATTGCAAAATGATCACCAC---AAGTCTAGTTAACATTCATCACT--
---------CCATTCCAGTTTTATCATTACTT---AATGCTTATAAGTTTACTGTTAAAATTTGAAACGGG---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------TGAAAAAA-ATTTAT
>Condylura_cristata
TTACTATCCTAACTTGTCGGCACAACAATCAGCAGAATCACAGAACAGACTCATCTACTCTGTTTA---TTCCCATT---
--------------TTTGAATTATTATTT---------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------GATGCTTATAAGATTAATAATATCATATGGAACAAG---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------TGAACATA-GTTTAC
>Sorex_araneus
TTATCATTG-AAATTGTCTCCACATTGGCCAGGTGAATCACAGGACAGATACTTCAAACTTTTTAA---TGACT--A---
-------------GATTCA-TCGTTACTT---------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------CATGCTTCTAAAAATATATTTTAAATTTGGGACAAATTGGTCAGG
GCGATAGTACAGTGGATAAGGTACTTGCCTTGCACATGGCTGACCTGAATCTGATACCCAGTACTCAGATGGTCCCCAGA
GCTGACCAGGAGTGATATCTGAGCACAGAACCAGGACTAAGTCCTGAGCACTCCCAGGGTGGCTCTCAGAAAATGAAAAA
AATATTTTAATAAAATTAAATTTAAAATTAAACTTTTAATTAAAATTAAAAATTAAAATAAAAACAAAAATTTTAAATAA
AATTAAAAAAATTAATTTGGTAAAAGTAAAGTTAATTCAT
>Homo_sapiens
TTACCATT--AAATTTCATACATGTTGACAAGTTAAATCACAGGACAGATATTTTTACACTGCTAA---TCACTTCA---
-------------GCTTTA-TTGTTCCTT---------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------GATGCTTATAAGTTTACTTTTAAAATTTAGAACAAG---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------ACTTAT



Dog405_LINE

>L1_CARN7_3END
--------------------------------------------------------------------------------
-------------------TT---TTTTTA-------------TTTGAGTATAATTGACATACAATGTTATATTAGTTTC
AGGTGTACAACATAGTGATTCGACATTTGTATACATTGTGAAGTGATCACCACAATAAGTC-------TAGTTACCATCT
GTCACCATACAA--------------------------------------------------------------------
--------------------------------------------------------------------------------
---------
>Canis_familiaris
TAATGTCAGTAACATGGT-ATGCCCTCCAACAACAACAAC---AAAATCCATTAAAA---TTTTGCTTTCTTT-------
TAATGGTAACTAAACTTTATT---TTTATAACTTTTTA----ATTAAAGTATAAATGACATATAACATCATATAGGTTAT
AGGTGTACAACATAATGATTCAATAT--------ATTGTGAAATGTTCATCACAGTCTGTC-------TAGATAATATCT
ATTC-----------------------------------------------TTTTGCTGTTTTT---AAAATGTA-----
--------------------------------------------TGGATTGTTTGAATTATTCAGTAT--ATCTTT-GTT
TTTCCTTTC
>Felis_catus
TAATGTTACTAATGTAAT-ATACCCTCCAACAACAACAACAACAAAATTCTTTAAAA---ATTTGCTTTTTCT-------
-TATGGTAACTAAGCTTTATT---TTTACAACTTTATT----ATTAAAGCATAATTGACATATAACATTACATTAGTTAC
AGGTGCATAACATAATGATTCAATAT--------ATTGTAAAATGATCACCACAGTATATC-------TAGTTAATATCT
GTTC-----------------------------------------------TTTTGCTGTTTTT---AAA-TGAG-----
--------------------------------------------TGGATTGTTTGAACTATTCAATAT--ATCTTT-GTT
TTTCCTTTC
>Manis_pentadactyla
TTATGTCAGTAACA--AT-GTACCATCCAACAATAACAACAAAAAAATCCATTAAAA---TTTTGCTTTTTTA------A
AAATGGTAACTTAATT--------TTTTTAATTCTTTTTTTTATTGAGGTGTAAT---------ATATAACATTGGTTTC
AGGTGTACAAACTAATGATTCAGTATTTGTATACATTGTGAAATGATAGTCACGGTAAGTCTAGTTAATAGTTAACATCT
GTTA-----------------------------------------------TTTTGCTGTTTTT---AAAATGTA-----
--------------------------------------------TAGATTGTCTTAACTATTCAGTGTACATCTTTTGTT
TTTCCTTCC
>Sus_scrofa
TAATGTCAGTAATA--AT-GTACTCTACAACAACAAC-----AAAAATCCATTAGCA---TTTAAAAATTTTT------T
TAATGGTAACTTAA----------TTTTTAAATCTTTT-----TTGAGGTATAATTGCCATATAACATTACATCAGTTTC
AAGTATACAACATAATGATTTGATATTTGAATGTATTGTGAAATGCTTACCACAATAAATC-------TAGTTAACATCC
ATTTCACTGT-----------------------------------------TTTTGCTGTTTTT---AAAATGTGTAGGC
TACTGGTGATGTCTTAAATTTCTTTTAAAAAAAATTAAAATGTTTGGATTGTCTGAACTCTTCAATGT--ATCTTTTGTT
TTTCTTTCC
>Tursiops_truncatus
TAATGTCAGTGGCATAAT-GTACCCTCCAATAGCAAC-----AAAAAGCCATTAAAA---TTTTGCTTGTTTT---TTTA
AAATGGTAACTGAATTGTGTTTTATTTTTAACTCTTTT-----TTGAGGTGTAATTGCCATATAACAGTACCTCAGTCTC
AAGTGTACAACATAATGATTTGATATTTGTATACATTGTGAAATGCTCACCACAGTAAGTC-------TAGTTAACATCT
GTTA-----------------------------------------------TTTTGCTGTTTTT---AAAATGTG-----
-----ATGATGTTTTAAGTTTCTTTA--AAAAAGTTAAAATGTATGGATTGTCTGAACTCTTCAATAT--ATCTTCTGTT
TTTCTTTCC
>Equus_caballus
TAATGCCAGTAACATAAT-GTACCCTCCAACAACAACAAC--AAAAATCTATTAAAA---TTTTGCTGTTTTT------T
TAATAGTAACTTAACTTTATT---TTTTTAACTTTTTT-TTTACTGAGATATAGTTGACATATAACATTATATTTG----
--ATGTACAATATAATGATCCAATATTTGTATACACTGCGAGACGATCCCCACAATAAGTC-------TAGTTAATATCT
GTTA-----------------------------------------------TTTTACTGTTTTA---AAAATGTA-----
--------------------------------------------TGGATTGTCTGAACTATTCAATAT--ATCTTTCATT
TTTCCTTCT
>Ceratotherium_simum
TAATGCCAGAAACATAAT-GTACTCTCTAAGAACAATAAC--AACAATCCATTAAAA---TTTTGCTGGTTTT---TTTA
TATTAACAATTTTATTTATTTATTTTCTTAACTTTTTTTTTTGCTGAGGTATAATTGACATATAGCATTATATTTGTTT-
-GGTGTACAACGTAATGATTCAATATTTGTAAACATTGCAAAATGATCACCATAATAAGTC-------TAGTTAACATCT
-TTA-----------------------------------------------TTTTGCTGTTTTT---AAAATGTA-----
--------------------------------------------TGGATTGTCTGAACTATTCAATAT--ATCTTTTGTT
TTTCCTTCC
>Myotis_myotis
TCATG---------------TACCCTCCAACAACA--------AAAATCCACTAAAA---TTATGCTGCTTGT---TTTT
TTATGGTAACTTAATTTTATTCATTTTTTAAACTTAAT----TTTGATATTTAATTTACATATAACATTATATTAGTTTC
AGGTGTACAAC---ATGTTTCAATATTTGAAT-CACTGTGAAACATTCCCCACATTAAGTT-------TAATTAACATTC
GTTGTTTTTTGTTTGTTTGTTTGTTTGTTTGGGGTTGTTTGGGGGTTT---TTTTGCTGTTTTT---AAAATGTA-----
--------------------------------------------TGGAATATCTGAACTGTTCAATAT--ATCTTTTGTT
TTTCCTTCC
>Rousettus_aegyptiacus
TAATGTCAGTAGCATAAA-GGACTCTCCAGCAACAAC-----AAAAATCCATTA--A---TTGTGCTGTTTTT---TTTT
TAATGGTAACTTAATTTTATTTACTTTTAAAACTTTTT-----TTGAGGTTTAATTGACATATGATATTACATTAGTTTC
GGGTTTATAACGTAATGATTCGATATTTCCATACATTGTGAAATGACTACC---TTAAGTC-------TAGTGAACATC-
-TTA-----------------------------------------------TTTTGCCATTTTT---AAAATGTA-----
--------------------------------------------TGGAATCTCTGAATTATTC--TGT--ATCTTTTGTT
TTTTCTTTC
>Condylura_cristata
TAATGTTAGCTATATAAT-ATATCCTCCAACAACAAA-----AAAAATTCATTAAAG-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------TTTTACTCTTTTT---AAAGTATA-----
--------------------------------------------TAAGTTGTCTG-ACTATTCAAGGT--ATCTTTTG--
TTTCTTTCT
>Sorex_araneus
TAAT----GTAACATAATGATTTCTTTGAACAGCAAAAGGGAAAAAAATAAGTAAAA-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------GTTTGCC-ATTTT---AAAATGTG-----
--------------------------------------------CACATTGTCTG-GCTGTTCAAAAT--ATCTTTTGTT
TCTTCTTTT
>Homo_sapiens
TAATGTCGATAACA------TGTACCCAAACAACAAA------------AATTAAAA-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------ATGTGCTCTTTTT---AAAATGTG-----
--------------------------------------------TGAATTATATGAACTGTTCAATAT--ATCTTTTGTT
TTTCCTTCC



Dog408_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------TTTTTCCAGCTTTATTGAGGTATAATTGACAAA
TAAAAATTGTA-TATATTTAAGGTGTACAACGTGATGTTTTGATATACGTATACATTGTGAAATGATTACCACAATCAAG
-----------------------------------------------------------------------
>Canis_familiaris
TTTTTCTTCTCTTCCTCAACCAGGGTCAAGACTCACCTAAAACCATGATC-------TTTTATTGCCTC-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------CAGC-------------CTTACTGAGGTATATTTAAC---
--AAAACCTTAAGATATTTAAGGTATATAGCATGGTGATCTGATATATGTACACACTGTCAAA-GGTCA-----------
---ATCTCATTATCAGT---AGTTCTGGGTCCGTTTGGACTCAAGTCCCCACCTGGATCC-TCTGACCTAG
>Felis_catus
CTTTTCTTCTCTTCCTCTACCAGGGTCAAGATTCACCTAAAACCATAATC---------TTTTTCCCCC-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------CAGC-------------TTTGTTGAGGTATAACTGAC---
--AAAATTTTAAGGTATTTAAAGTGTGTAGCACGGTGATTTGATATACATACACATTGTGAAA-GGTCA-----------
---ATCTCATTATTAGC---AGTTCTGGGTCCATCTGGACGGAAGTCTCCTCCTGGACCC-TCTGGCTTAG
>Sus_scrofa
CTTTTTT-CTTTTTTTCAATCAGGGTCAAGACTCA-TTAAGCCTCTTTTA---TATATATATATATATATATATATATAT
ATATT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------TAGT-------------TTTATTGAGGTATAACTGAC---
--AACACTGTAGGATAGTTAATGTATACATCATGGTGATTTGATATACGGATACACTGTGAAA-GGTTA-----------
---ATCTTACTGTCAGC---AGGTTCGGATCTGTCTGGGTGGAAGTCCTCTTCTGGACCC-TCTGGCTTAA
>Tursiops_truncatus
CTTTTCTTCTTTTATTCAACCAGGGTCAAGACTCAATTAAACCCCTAGTC-------TTTGGGGGTTTTTTCTTTCTTGC
CCTACTGGTTCTCACACCCCAGCAGGACCGGCTTTCCCTTACCACTCGTGGCTTTCAGTTTGCCACTTAACCCTGTCACC
AATTCAAGAATCAAACTGATGCTTCTGTTTTTGCTGTAGTGCATTTGCTATATAATCTGCCAGCTATATTTTTGCTTTAA
ATCACTTTGGTGTTAGGTGTGTTCTCATACTCAGCACAGAGTGAATTTTGCAGAGTCCATATTTCTGACTGGTACATATA
CTCTGCCCGGCATGTGACTGGAGTTCCATAAAATATGTTTCTTTTTTCTTTTCTTCTTTTATTCAACCAGGGTCAAGACT
CAATTAAACCCCTAGTCTTTGGGGGTTTTTTTCTTTTTTTCTGT-------------TTTAATGAGGTATAACGGAC---
--AAAATTGTAAGATATTTAAAGTTCACATCATGGTGATTTGATACACAGGCACATTGTGAAA-GGTT------------
---AATTTACTGTCAGC---AGTTTTGTATCTGTTTGGACCAAAATCCCCTCCTGGACCC-TCTGGCTTAG
>Equus_caballus
CTTTTCGTCTCTTCTTCAACCAAGGTCAAGACTCACCTAAGCCCCTAGCC---TTTTTTTTTTTCTTTT-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------CAGC-------------TTTATTGAGGTATAACTGAC---
--AAAACTGTAAGATATTCAAAGCGTCCATCATGGTGATTTGATATATGTATACAATGTGAAA-GGTTC-----------
---ACCTTACTAACAGC---AGTTT-GGATCTG-CTGGACTGACGTCCCCTCCCGGGCCC-TCTGGCATTG
>Ceratotherium_simum
CTTTTCGTCTGTTCCTCAATCAGGGTCAAGACTCACCTAAGCCTCTAACC-----TTTTTTTTTCTTTT-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------CAGC-------------TTTATTGAGATATAATTAAT---
--AAAATTGTAAGATATTTAAAGTGTACATTGTGGTGATTTGATACATGTATACACAGTGAAA-AGTTA-----------
---ATCTTATTATCAGC---AGTTT-GGATCTGTCTGGACTGAAGTCCCTTCTCGGACCC-TCTGGCTTAG
>Myotis_myotis
TTTTTCTTCTCTTCCTCAACAGGGGTCAAGACTCACCTAAGTCCCTAATA-----TGTACGTGTGTTTC-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------CAGT-------------TTCACT-AGGAATAATAGAC---
--AAAATCATAATATATTTAAAGTATACA-CATGGTGATTTGATATACATATACATTGGAAAA-GGTTA-----------
---ATTTTATTATCAGA---AGTTTTGGAACTGTCTGGACTCAAGACCCCTCCTGGACCC-TCTGGCTTAG
>Rousettus_aegyptiacus
CTTTTCATCTCTTCCTCAGCTAGGATCAAGACCCACCTAAGGCCCTAATA---------TATTTTTTTT-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------AAGT-------------TTTATT-AGGTATA-TTGAC---
--AAAACTGTAAGATACTTAAAGTGTACACTGTAGTGATTTGATGTATGTATACATCAGGAAA-GGTTA-----------
---ATATTATTATCAGC---AGTTTGGGATCTGTGTGGACTGAGGTCCCCTCCTGGATGT-TCTGGCTTAG
>Condylura_cristata
TTG------TCTCCCTCAGCCAGAGTAAAGTCTCCACTAAG-CCCTAAC-----------ACTTATTAG-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------CAGC------------------------------------
--------------------------------------------------------------------------------
--------------------AGTTT-GCATCGGTGTGGA-TAAAGTCCCTTCCTGAACCCTTCTGGCTTAG
>Uropsilus_gracilis
CGG------TTTCCTTCCACCAGGATAAGGATTCAACTAAG-CCCCTAA-----------ATTTATGAG-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------CAGC------------------------------------
--------------------------------------------------------------------------------
--------------------AGTTT-GGATTAGTTTGGACTGAGGTTCCCTCCTGGAACTTTGTGGCTTAG
>Homo_sapiens
ATTTTCTTCTCTTCTTCTACCATGGGCAAGCCTCACCTAGGCCCCCAATC---------TTCTTGTTAG-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------AAGC------------------------------------
--------------------------------------------------------------------------------
--------------------AGTTTGGGACCTGTCTGGACCTGAAGTCCCTTCGGAACCA-TCTGGCTTAG



Dog409_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
-----TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGA
-TATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTACCA----TTT
TTTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTT-AGC-AAATTTCAAGTATACAATACAGTATTATTAACTATAG
TCACCATGCTGTACATTAGATCTCCAGAACTTATTCATC-----------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------
>Canis_familiaris
TTTATA--TTTTCATTTTAAAGTAGGCAGTAAC-ATGTAGATTAAAAGT----GTGAC---AAAGTT-GTTTTTTTTTTT
TA-----------------CTGAGGTGTAACTGAC---------------TAGTTTCAAGTGTACAACATAATGATTGAA
-TATCTATAAATATTGTGAAATGATCAC------AAGTCTATTTAAC--ATCCAACACCATACATAGTTA-GAAATTTTT
TTTCTTTT------AAGACTTTTAAGATAAA--CTTTT-AGC-AACTTTCAAATATGCAGTA--GTGTTAGTAACAATAG
CCACCATACTGTATGTTACAACCCC------------------TAGTTCTGTTTTTTCAA---CCAA----------CTT
---TGAGGTATAATTTACAGGCAATAAAATTCTCCTGTTTTAAGTGTTCATTGAATTTTACCAACTTTGAGGTATAATTT
ACAGGCATAAAATTCTCCTGTTTTAAGTGTTCATTGAATTTTG
>Felis_catus
TTTATATTTTTTTATTTTAAAGTAGGCAATAAC-AGGTAGACTAAAAGTGACTAAGAC---AAAGCT-CTATTTTTTT--
-A-----------------TTGAGACAT--------------------ATTAGTTTCAG-------------TGATTTAG
-TATCTGTGTACATTGTGAAATGATCACAA----AAGTCTAGTTAAC--ATCCATCATCATACATAGTTA--GAAATCTT
TTTTTCTTGCAATGAGGCTTTTTAAGATGTA--CTCTTAAGC-AACTTTAAAATACGCTATACAGGGTTAATAACTATAG
TCTCCATACCGCATGTTACATCCC-------------------AAGTTCTGTTTTTTAAA---TCAA----------CTT
---TGAGGTATAATTTACAGGCAGTAAAATT-------------------------------------------------
-----------------CTGTTTTAAGTGTTCATTGAGTTTTG
>Manis_pentadactyla
TTTATA------TCTTCTAAAGCAGGC---------------TTAAAAT--GTGTAAC---AAAGTC-CTATTTTTTT--
-A-----------------TTGAGGTATAATTGACATAT-ATCATTCTATTAGTTTCAAGTATACAACATAATGATTCAA
-GATTTGTATATATTGTGAAATGATCACCACACTATGTCTAGTTAAT--GTCCGTCACTATAC----------AAATTTT
TTTTTCTTATGATGAGGACTTTTAAGATCTA-----TT-AGCAAACTTTCAAATATGCAATACAGTATCATTATCTATAG
TCACCATGCTGTACATTATATCCCC-----------------AAAGTTGTATTTTTTAAA---TCAA----------CTT
---TGAGATACAATTTAAATGTAATAAAATT-------------------------------------------------
--------------CTCCCATTTTAAG-GTTCACTCAGTTTTG
>Sus_scrofa
TTTATA--TTTTTGTTTTAAAGCAGGCAATAGC-ATGAAAACTAAAAATTAGTGTGAC-------------TTTTTTTT-
AA-----------------TTGAGGTACAATAGATA---------TATATTAGTTTCAAGTGTACAACATAATGATTTGA
-TATTTGTGTATTTTATGAAATGATTTCA-----ATGTCTAGTTAAT--AT--GTCACAATACATAGCTACAAAATTTTT
TTTGTTTC--GATAAGAACTTT-AAGATTTA--CTCTT-ACC-AACTTTCAAA-ATGCAATATGGTATTATTAATTCTAG
TCACCATGGTAGACGTTACATTCCC-----------------AGAGTTCTAGTTTTTAAA---TCAA----------CTT
TATTAAAGTATAATTTACATGCAATTGAATT-------------------------------------------------
--------------CTCCAGTTTTAAATGTTCACTCAGTTTCA
>Bos_taurus
TTCTTATATTTTTGTTTTAAAGCAAGCAGTAAC-ATGCAAACTAAAAGTCAATGTGAC---AAAGCT----TTTTT----
-------------------------TAAAA------------------ATTTTTTCTTGAAGTACAACACAACGATTTGA
-TGTTTGTATATATTGTGAAATGATTA----AATAAGTCTAGTTCAC--ATCTGTCACAATACATAGTTA--AAAAATTT
TTTTCCTTGTGATGAGAACTTTTAAGACCTAGTTTCCT-AAC-AACTTTCAGA-ATGCAGTACAGTACTATTAATTCTGG
TTACCATGGTAGATATTACATTCCA-----------------AAAGTTCTGTATTTAAAA---TCAA----------TTT
TATTGAGGTATAATTTACATGCAGTAAAATT-------------------------------------------------
--------------CTCCTGTTTTAAAT---------GTTTTA
>Equus_caballus
TTTGTA--TTTTTGTTTGAAAGCAGACAATAAC-ATG---ACTAAAAATAAGTATGAC---AAAATT-CTATTTTTTTC-
AA-----------------TTGAGGTATAATTGACA---------TATATTAGTTTTAAGTGTATAGCATATTGATCTGA
-TATTTGTATATATTGTCCAGTGATCACCACAATAAGTCTAATTCAC--ATCTGTCACCATAC--AGTTA-GAAATTTTT
TTTTTCTTGTGATGAGGCGTTTAAAGATCTATTCTCTT-AGC-AACTTCCAAATATGCAACACAATATTATTAACTATAG
TCACCATGCTATACATTACATCCCT-----------------AAAGTTCTATTTTTTAAA---TCAG----------CTT
TATTGAGGTATAATTTATATGCACTAAAATC-------------------------------------------------
--------------CTCTCATTTTAAGTGTTCATTGAGTTTTG
>Ceratotherium_simum
TTTGTA--TTTTTGTTTGAAAGCAGGCAATAAC-ATG---ACTAAAAATAAGTGTGAC---AAAGTT-CTATTTTTTT--
AA-----------------TTGAGGTATAATTGACATAT-AACATTATATTAGTTTCAAGTGTACGGCATAATGATTTGA
TTATTTGTATATATTGTGAAATGATCACCACAATGAGTCTAGTTAAC--ATCTATCACCATACATAGTTACAAAAATTTT
TTTTTCTTGTGATGAGGACTTTACAGATCTGTTCTCTT-AGC-AACTTTCAAATATGCAATACAGTATTATTAACTATAA
TCACCATGCTGTACATTACATCCCC-----------------AAAGTTCTATTTTTTAAA---TCAA----------CTT
TATTGAGGTATAATTTATATGCAATAAAATC-------------------------------------------------
-----------------TCATTTTAATTGTTCATT--GTTTTG
>Myotis_myotis
TTTATA--CTTTTGTTTTAGAGCAGGTAATAAA-ATGTAGACTAAAAATGGGTATAGC---AAAATT-GTATTTTTT---
AA-----------------TTGAGGTATAGTTGACA--------TAACATTAGTTTCACGTACACAACGTAATGATTTGA
-TAATTGTATATATTGTAAAATAATCACCACAGTAAGTGTAGTTAAC--ATCTGTCACCAT----AATTAC--AATTTTT
GTGTGTGTGTGACTAGGGTTTT-AAGGTCTACTCTCTT-AGC-AATTTTCAAATATGCAATACAGTGCTATTAACTATAG
TCACCATGCTGTACATTACATCCTC-----------------AGAGTTCTATTTTTTAAA---TAAA----------CTT
TATTGAGGTATAATTTACATGTAATAAAATT-------------------------------------------------
--------------CTCCCGTTTTAAGTCTAAGTTGAATTTTG
>Rousettus_aegyptiacus
TTTATA--CTATTGTTTCAAAGCAGCCAATAAC---GTGGACTAAAAATGAATGTTAC---GAAGTT-TTATTTTCTT--
-A-----------------TTAAGGTATAATTGACA-----------AATTAGTTTCAAGTATACAACATAATGATTCAA
-TATTTGTATATATTGTGAAATAATCTCCAAAATAAGTCTAAT------ATCCTTCACCATCTATAATTACAAAAATATT
TT----TTGTGATGAGAGATTTTAAGATCTACTCTCTT-AGC-AACTTTCAAATATGCAATATAGCACTATTCAT--CAG
TCACCATGCTATACATTACATCCCC-----------------AAAGGTCTGGTTTTTAAA---TCAG----------CTT
TACTGAGGTGTAATTTACATGTAAT-AAATT-------------------------------------------------
--------------CTCTCATTTTAAGTATTCATTGAGTTTTG
>Condylura_cristata
TTTATA--TTTCTGTTTTAATGTTGGCAATAATAATGCAGGCTAAAAGTGAGTGTGGC---AAACTTCCTATTTTTT-AA
AA------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------CCAGAATGTGTTTTTCA
TAGTGAGGCATTTTTTACATGCAGTG------------------------------------------------------
------------------------------TCCCTGAGTTTTG
>Solenodon_paradoxus
TTTTTA--TTTTTGTTTTAAAACAGGCAATAGC-ATGCCGACTAAAAATGAATGTGAC---AGAGTT-CTATTTTTT--A
AA------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------TCAA----------CTT
TATTCAGGCACAATTTACATATAT--AAATT-------------------------------------------------
--------------CTCCCATGTTTAATTTTCAGTGAATATTG
>Cavia_porcellus
TTTATGTATCTTTGTTTTAAAGCAGATGACACT--TGTACTTTATGGAT----GTGCT---GACGTT-CTACTTTT--AA
AA------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------TCAA-------------
---TTCAGTAGAATTTGGCTGT----------------------------------------------------------
--------------------TTTTAAGTGTTCACTGAATTTTG



Dog410_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGA
TGTTTTGA-----------TATACGTATACATTGTGAAATGATTACCACAAT---CAAGCTAATTAACATATCCATCACC
TCACATAGTTACCATT----------------------------TTTTTGTGTGTGGTGAGAACACTTAAGATCTACTCT
CTTAGCAAATTTCAAGTATACAATACAGTATTATTAACTATAGT----CACCATGCTGTACATTAGATCTCC-AGAAC-T
TATTCATCCTGCATAACTGAAACTTTGTACCCTTTGACCAACATCTCCCCATTTCCCC----------------------
-------------------------------------------------------
>Canis_familiaris
AAAACTACCTTTTCCAT--CTCTCCTCCT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------GTGTTTTCCT-GAGTCT-ATGGTA---TTGAAAGAGCCA---
--TTTCC---------CCCCAGTTTTATTGAGATACCCTCGGCAGAC-GGCACTGTGTAGATTTAAGGTGTACAGCATAG
TGATTTGA-----------CCTAC--AT---TTGTGAAACGATTGTCACAGG---AAGTTTAGTTAAC--ATCTGTCATT
TCATGCAGACCCGAAT----AAAGAAAGAAAAAGAAAAAAAAAATCTTTCCTTGCAATGAGAACTCTAAGGATCTGCTCT
CTTAACAACTTTCAAACACGCCATAGAGCAGTGTTAGCTAGGGC----TATCCTACTGTACATTACATCTCT--ATAT-T
TATTTATATT--GTAACCAGAAGTTTGTACCTGTTGGCCACTTT-----------------TCCCAGAGCCATCTCT---
GAAGTGGAGTGACATCACT------ATATCCAGTGAAACAAAGTGGGAGGGAATG
>Felis_catus
AAACCTACTTTTTCCTT--CTCTACCTCT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------GTGTTTCCTG--AGTCTTACGACA---TTCTAATAGCCA---
--TTTCT--------CCCCAGGTTTTATTGAGATGTCGTTGGCATTC-AGCAGTGTGTAAGTTTAAGGTGTATAGCATGA
TGATGTGA-----------CCTAG--AT---TTGTGAAATGATTACCACAATAAAAAGTCGAGTTACC--ATCAGTCATT
TCATGTAGATACAAAA-----------------------------------AAGAAATGAGAGCTCTTAGGATTTTCTCC
CTTAACAACTTTCCGACGTACCATATAGTAGTGTTAACTACAGC----TATCATGTTGTACATGACATCTCT-AGTAT-T
TATTTATATT--ATAATTGGAAGTTTGTACCTGTTGACCACTTT-----------------TATGATAGCCATTTCT---
GAAGTAAAATGACATCATT------GTATCTAACGCAACCGAGCGGCAGAGAATT
>Manis_pentadactyla
AAACCTACTTCTTCTAT--CTCTCCCTCT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------GTCTCTCCTAGTAGTCTCATGGTT----TGGGATAGCCA---
--TTGTT---TATTTCCCCCAGTTTTAGCAAGATATAATTGACATGC-AGCAC--CATATGTTTAAGGTGTGAAGCATAA
TGATT-GT-----------CTTAC--AGGCATTGTGAAATCATTCCCACAAA---AAGTATAGTTAAC--ATCCATCATC
TCATATACATACAAAATAAAAGACAAAGAAAAGGAAAAAACAAGTTTTTCCTTGCAATAAGAACTCTTAGGATCTACTCT
CTTAA---CTTTCAAATACACCAGACAGCAGTGTCAGC---AGT----CTTCCTGTTGTATGTTACATCCCC--AGAA-T
TATTTATTTT--AAAACTGGAAGTTTGTACCTTTTGACCACCTG-----------------GATGATACGTGCTTCT---
GAAGTGAAATGAC--------------ATCTAAGGCAACAAAAAGGTAGGGGACT
>Sus_scrofa
AAATCTGTTTTTTCCAA--CTCTACCTCT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------GTCTTTTCTAGGAGTTTCATGGTG-----------GCCA---
--GATTT--------TTTCCAGTTTTAC---GATATGATTGACATAT-AATACTGCATATGTTTAAGGTGCAC-------
--------------------------ATATTTTGTGGAATGATTACCACACT---AAGTTTA---AAC--ATCCATCATC
TCAAATAGATACAATT----------------------------TTTTTTCTTACC-TAAGAGCTCTTATTATTTACTCT
TTTAACACCTTTCAATTATGCC-TACAGCAGTGTTAACTACAGT----CATTATGTTGTTTGTGTCATCCCTAAACAC-T
TATTTATCTT--AAAACTAGAAGTTTGTA-CTTTTGACTACTCT-----------------CCTGATAGCTGTTTCT---
GAAGTGAAATGACATCATG------GTATCTAATGCAACAAAAAGGTAAGGAACT
>Bos_taurus
AAATCTCCTTTCCCAA---CGCTACCTCT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------GGCTTGCCTG--AGTCTCCAGGTA----TATGCTGGTCG---
--TTTTT--------CCCCCAATTCTAT---GATACAATCAACATAT-AATGCTGTATGTGTTTAAGTCATATAACATA-
-----------------------------------------------------------TGACTTAAC--ACCCATCACC
TCATAGGACTAAAAAA---------------------TGATTTTTTTTTTCTTACAATGAGAACTCTTA--ATTTACTCT
TTTAACAACATTCAAAAATAGTGTACAGCAGTGCTAACTACAGT----AATCTTATTGTACATTTCATCCCT-AGTAC-T
TTTTTATCTC--ATATCTGGAAGTTTATACCTTTTGACCACCGT-----------------CATGATAGCTGTTTCT---
GAAGTGAAATGACATCATT------GTGTTTAATGTAACAAAAAGGGAGAGGATT
>Equus_caballus
AAACCTACTTTTTCTGT--CTCTACCTCT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------GTCTTTCCTG--AGTCTCATGGTA----CATGATAGCTGGAG
G-TTTGT--------TTCCCAGTTTTACTGAGATAAAATTGACATAC-ATCACTGTGCACATTTAAGGTGTAGGGCATAA
TGATTCGA-----------CTCAC--ATGTGTTGTGAAATGATTACCACAAT---AAGTTTAATTAAC--ATCCATAATC
TCATATGGATACAAAA------------AAAAAAAAGAAAAAGATTTTTTTTTGTAATGAGAACTCTTAGGAGTAAATCC
TAAGACAACTTTCAAATATACTATACAGCAGTGTTAACTATAGT----CCAAATGTTATACGTTGCATCCCT-AGTAC-A
TATTTATCTT--AGAACTGGAAATTTGTACCTTTTGACCACTTT-----------------TGTGATAACTGTTTCT---
GAAGCGAAATGACATTATT------GTATCTACTGCAACAAAAATGGAAGGCATT
>Ceratotherium_simum
AAACCTACTTTTTCCAT--CTCTATCTCT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------GTCTTTGCTG--AGTCTGATGGTA----CATGATATCTAGAG
GGTTTTT-------TTCCCCAGTTTTATTGAGATATAATTGATATAC-AGCACTGTATAAGTTTAAGGTGTACAATATAA
TGATTTGA-----------CTTAC--ATATATTGTGAAATGATTATGACAAT---AAGCTTAATTAAC--ATCCATCATC
TCATATAGATACAAAA------------AAAAAAAGAAACATGTCTTTTTCTTGTAACGAGAACTCTTAGGATTTACTCT
CTTAACACCTTTCAAATACACCATACAGCAGTGTTAACTATAGT----CAACATGTTGTACATTACATCCCT-AGTAC-T
TATTTATTTT--ATAACTGGAAATTGGTACCTTTTGACCACTTT-----------------CATGATAGCTGTTTCT---
GAAGTGAAATGACATTATT------GTATCTAATACTACAAAAAGGGAGGGGATT
>Condylura_cristata
AAGCCTACTTCTTTCAT--CTCTAACAT----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------ATCTTTCCCAAGAGTCTCATAGTA----TATGATAGCTGTA-
--TTTTT-------TCTTTTAGCTTTATGGTGATGTAATTGCTGTAC-AGCACTGTATAATTTTAAGGTACACAACATAA
TGACTTGA-----------CTTAT--AT---------------------------ATGTTTGATTCAT--ATCCAGTATC
TTATATAGGTAGAAAA-----------ATATGAAAAGAAAAAGTTTTGTCCTTACCACAAGAATGCTTAGCATGTATTCT
TTTAATAACTGTCATACATCTTGTA---------TAGCTATAGT----TATC-TGATGTATATT-CATCCCT-AGTAC-T
T-----------ATAACAGCAAACACAAATCTTTTGACCATCTT-----------------CATGATAGCCATT--T---
GAAGTGAAGTGACATCATT------GTATTTAATACAACAGAAAAGGAAGTGATT
>Sorex_araneus
AAACTAACCTTCTCCTT--CTCTATCC-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------TGCTTTTCTAAGAGATTCATTATT----TAG--TAA------
--TTTTT--------CCC---ACCTTATTGAACTATAGTGGCCATAT-AGCATTCTATAAATCTGAGATGCTTCGCTTAA
TAATTTGAATCATTGAAAGCATAC--AA---TTGTTAAATGATTGCTATAAT---ACATT--GCTAAT--ATCTTTGATC
TCATATCGATACCAAA----AA-------------------------------------GGAACTCTTAGGATCTCCTCT
C--AATAATTTT---------------------TTATTTATGACCCATTATCATTTTGTACATTTCATTTTA--TTATAT
CCTTGACACT--GAGTCCA---------AGCTTTTGTCTACTTT-----------------TATAATAGTCATTTCT---
GAAGTGAAACCATATCATT------GTATTTAATGCAACAAAAAG--AATAGATT
>Desmodus_rotundus
AAACCTACTTTTTTCAT--CTCCATCTTT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------GTGTTTCCTAAGAATCTTGTGGTA----TATGAAAGGTG---
--TTTCT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
GAAGTGAAATGACATCATT------GCAGCGAATGCAACAAAAAGGAAGGAGACT
>Rhinolophus_ferrumequinum
AAACCTACTATTTCCATAGCTCTGTCTTTCATAAGAGTCTCATGTGTGAGGTGTAATCAAACAAATGGTGAATGTTTAAA
TTAAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTACAGTAAAAAAA
CACATTGCCATTAATCCCCCTCAAAATATTCCCCCTCTCTTTGAACACACGGATCCCATTGTTCTTGCCACTTTCTGAAG
CAGTTCTGGGAGTCCTCTTTCATGAGTGTCTTTAGTTGTGCTGTCGTGGCTGTCTTGATGTCCTGAAACATTTTGAGTTT
GGGGAAGAGCCAGAAGTTGCACGGTGCCAGATCCAGTGAATAAGGTGGTTGAAGACGCACCATAATGGTTTTATGTGACA
GAAATTGCCGTATAACAGAAGCAATGTGTGACATGGGGCGTTGCCATGATGATGGATGATTTATGGTACACTTTAAAACA
CACCTTCTCCCATCTGTAGCTCACATCTGACTGACTGCACTGAACAATTTGAAACTTTTCACACACTGTTACTAAGAGTC
ATCTCGCTAATTCCTGTATTGAAGATCCCTGCCTTTCCATTGGGTGGCACTTGGCAGCAGCATTCACTGTATGTTTTGAT
CACAGCGGAAAGGCTCTGTTTCACACATTGTTTCTGGTATGGCAATTTCTGTCAAATAAAAACATTACGATGTGTTCTTA
TCCACCTTATTCACGGGATCTGGCACCATGTGACTTCTGGCTCTTCCTCTAAGTCAAAATGACCATGAAAGGTAAACATT
TTGAATCAATTCAGGACATCAAGGCAGTCACTACAGCACATCTAAAGACAATCATAAAACAGGACTTCCAGAACTGCTTC
AGAAAGAGGTAAGAACAATGGGATAAGTGTGTTCAAAGAGAGGGGGAGTATTTTGAGGGGAATTAATAGCAATGTGTCTT
TTATTGTAATAATTTTTTAAAATGTAAATATTCACCGTATTTTTTTATCATACCTCA---TA----TATGATAGGCA---
--TTTTT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
GAAATGAAATGTCATCATTGTATGAGTATCTAATTCAACAAATAGGGAGGAGACT
>Homo_sapiens
GTGCCTACT-TTTCCGT--CCCTACCTTT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------GACTTTCCTAAGAGTGTCATGGCA----TGTAATAGCAG---
--TTTCT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
GAAGTGAGATGACATCACC------ATATTTAATGCAACAAAAAGGGAAGGGGTT



Dog412_LINE

>L1_CARN7_3END
-------------------------------------------------------------------------GATGGTA
ACTAGACTTATTGTGGTGATCACTTCACAATGTATACAAATGTCGAAT-CACTATGTTGTACACCTGAAACTAATATAAC
ATTGTATGTCA----ATTATACTCAAATAAAAAAA---------------------------------------------
----------------------------------
>Canis_familiaris
AACC-ATCAGGCAGAATTAATTGAGTGTACTGAAAGGTCTGGAAAGCTCTA---AAAATCATCACAATTA----------
--CAGATTGGTTTTGGAGATTATTTTACAATATACACAAATATTATAT-CATTATGTTGTACACCTAAAACTAATATAAT
GTTATATGTCA----ATTCTATCTCAACAACAACAACAAC---AATAAAATCACAATTA---TTCAAAGGAGATTTAGGG
ATAAAGGCCAACAACAAATTCT-ACTTTTTCAGA
>Felis_catus
AACCTGTTAGGCAGAATTAGTTGAGTTTACTTAAAGGTCTGGAAAGCTATA---AAAA-AATCATAATTA----------
--CAGACTTAT-------------TTGTAATATATACAAATACCATAT-CATTATGTTGTATGTCTGAAACCAGGATAAT
GTTATATGTTT----ATTATACCTCAACAA-------------CAAAAAAGCACAGTTA---TTCAAAGGAGATTTAGAG
GTAAAGGCCAGCAACAAATTCT-GCTTTTTCAGA
>Manis_pentadactyla
AACCTGCTAGGTAGAATTTGTTGAGTTTAGAAAAAAATCTGTAAAGTCATG---AAAAGATTCACAATTA----------
--CAAATTTATGATAGTGATCATTTTTCAATATATACAAGTACTGTAT-TGTTATATTGTACACCTGAAACTATATACAT
GT----TGTCA----ATTATGCCTCAATTTTT-----------AAAAAAATCACCATTA---TTCAAAGGAGGCTTAGAG
GTAAGGGACACCAACTAATTCT-ACTTTTTCAGG
>Sus_scrofa
AACCTGTTAGGCAGAATTAGTTCAGCTTAGATAAAGGCCTGGAAAGCCATG---AAAATAATCATATTTA----------
--TAGACGTATCATGGTGATCCTTTTGCAACATATACAAATATCAGAT-CACTATGTAGTACACCTGAAACTGAAATAAC
ATTGGATGTTATATTAGCAAAATTTAAAAAAAAT---------TTAAAAATCACAGTTG---TTCAGAGGAGACTTAGAG
GCAAAGGCTACCAACAAATTCT-GTTTTTTCTTG
>Tursiops_truncatus
AACCCATCAGGCAGAATTAGTTGAGTTTAGATAAAGGTCTGGAAAGCCATG---AAAATAACCGTAATTA----------
--TAGAC--ATTGTGGTGATTGTTTTGCAATATATACAAATATCAAAT-CATTATGCTGTACTCCTGAAACTAA-ATAAC
GTTATCTGTCA----ATTATACCTCAAT---------------AA--AAATCACAGTTA---TTCAAAGGAGGTTTAGAG
GTAAAGGCCACCAACTAATTCT-GCCTTTTCAAG
>Equus_caballus
AACCTGTTAGGCAGAATTAATCGAGTTTAGATAAAAGCCTGGAAAGCCATG---AAAATAATCACAATTA----------
--TAGACTTATTGTGTTGATCACCTTACAATATGTATAAATATCTAAT-CATTATGTTGTACGCTTGAAATTAATATAAT
GTTATATGTCA----ATTATATCTCAATG--------------AA-TGAGTCACAATTA---TTCAAAGGAGATTTAGAG
GTAAAGGCCACCAACAAATTCT-ACTTTTTGAAG
>Ceratotherium_simum
AACCTTTTAGACAGAATTAGTCAAGTTTAGATAAAGATCTGGAAAGCCAAG---AAAATTACCACAGTTA----------
--TAGACTTATTGTGGTGATCATTTCACAATATATATAAACACCTAAT-CATTATGTTGTACACTTGAAACTAATGTCAT
GTCGTATGTCA----ATTATATATCAATAA-------------AAATAAGTCACAATTA---TTCAAAGGAGATTTAGAG
GGAAAGGCCACCTACAAATTCT-GCTTTTTGAAG
>Myotis_myotis
NNNNNNNNNNNNNNAATTAGTTGAATTTAGAAAAAGATCTAAAAAACCATG---AAAATAATAACAATTA----------
--TAGGCTTATTGTGGTGACCATATCACAGTATATATAAATAATGAAT-CTTTGTGTTATACACCTAGAACTAACCTAAT
GTTATATGTCA----ATTATACCTCAAT---------------AA--ACATCATAATTA---TCCAAAGGAGATTTAGAG
GTAAAGGCCATCAACAAATTCT-GCTTTTTTCAG
>Rousettus_aegyptiacus
AACCTGTTAGGCGGAATGAGTTGAATTTGGAAAAAGGTCTGGAAATACATG---AAAATAATCACAACTG----------
--GAGACTAATCATGGTAACCATTTATATATATATGTATATTTTACATACATTACATTGTACACCTGAAACTAATATAAT
GCAACATGTCA----ATTATACCTCAATAA-------------AAAAAAATCACAATT----TCCAAAGGAGATTTAGAG
ATAAAGGCCACTGACAAATGCT-GCTTTTTCCAG
>Condylura_cristata
AATCTGTTATATAGAATAAGT-GAGTTCATATAAAGGTCTAGCAAGCCATG-----------------------------
--------------------------------------------------------------------------------
-------------------------------------------GAA-TAATCAAAATTA---TTCAAAGAAGATCTATAG
GCAAAG---ACCAATAGATTAT-GCTATTT--AG
>Solenodon_paradoxus
AACCTGTTAAGCAGAATCAGTTGAATTTAAATAAAGGACTGGAAAGTCAAG-----------------------------
--------------------------------------------------------------------------------
-------------------------------------------AAAATAATCACTATTA---TTCAAAGGAGATTTATAG
ATAAAGACTAGCAATAAATTCTGGCTTTTC--AG
>Homo_sapiens
AGCCTGCTTAGTAGAATTAGTTGAGTTTGGGTAAAGCTCTGGAAAGTCATA-----------------------------
--------------------------------------------------------------------------------
-------------------------------------------AAAATAATCACACTTA---TTCAAAGGAGA--CAGAG
GTAAGGGCTACCAACAAATTCT-GCTTTTTCAAT



Dog413_LINE

>L1_CARN7_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------TTTTTTTATTTGA
--GTATAATTGACA--TACAATGT----------TA-TATTAGTTTCAGGTGTACAACATAGTGATTCGACATTTGTATA
CATTGTGAAGTGATCACCACA-------------ATAAGT-CTAGTTACCATCTGTCACCATACAANGT-----------
------------------------------------------------------------
>Canis_familiaris
TATTTCTGTATGATGAACTT------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------TAATACATTATTCACT--
-------------------------------------TGACTTACCTT--------TTTTTTTGCATAGGAGGAAATGCC
TA--ACAGTGGACAGCATATAACAATAAT----CAATTAATGATTATTTTAAACAAATCAAA-TAACATAAGCCAACTTT
CTTTTTCTCTTTTATTTATTTT--TTTAAGTGCATCTGT----CTATATTT-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------TAG-TTTTAACTTCCT-AATTTTGTCATCTTCTT-GGGCTCCAGTT----TTTCAGTTTTATTGA
G-GTATAGTTGACA--TATAAGATATAAATGACATATAACATGTTTCTGGTATACATGATGATAA--CAATATTTGTATA
CAATGCAAAATGATCACCACA-------------ATAAAT-CTAGTTAACACCCATCACAA-----------TATTTGAC
TTACCTT---GAAATCATTTATTGAGAACATAAATTCTGGGAACCATGGTATTTGGAAGA
>Felis_catus
TCTTTCTGAAGGATGGACTT------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------TAAAATATTTTTCATT--
---------------------------------T--TTCATTTTCATT----------TTT-------------------
------------CAGCAAATAACAA-------TCAATAAATGATTATTTTAAACAAA------TGACATAAACAGGACCA
GTTACTTCTTTTCTTTCCTTCTTTTTCTAGTGCTGCTGTCTATCTTTATTT-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------TAT-TTTTAGCTTCCT-AGCTATGTCATCCTCTT-GGACTCCAGTTTTT-CAACTTTATTATTGA
G-GTATAATTGACA--CATAACAT----------TA-TATTAGTTTCAGGTGTGCAACATAATGATTAAATATTTGTATA
ATTTCAAAAATGATCACCACA-------------ATAAAT-CTAGTTAACATCCATCACCA-----------TGTTTGAC
TTACCTT---GAAATCATTTATTGAGAACATAAATTCTGGGAACCATGGTATTTGGAAGA
>Manis_pentadactyla
ACTTTCTTAAGGATGGACTTTAATT-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------TGAAATGTTTTTCATT--
----AATAATAATACATTA---------TT---TG-TTGACTTACCTT-------TTTTTTTGGCATAGGAGGAAATGTC
TA--ACAGGGCATAGCACATAATAGATGT---ACAATAAATGTTTATT---------------CAACATAAGCAGGACTA
TTTT--------------------TTTTAGTGCCTCAGTGTACCTTTACTT-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------TAT-TTTTAACTTTCT-AATTTTCTCATCTTCTT-AAGCACT--------TGTTTTTTTAATTGT
GAGTATAATTGACA--TATAACAT--------------ATTAGTTTCAAATGTACAGCATAATGATTCAATATTTGTATA
CATTGCAAAATGATCACCACA-------------ATAAGT-CTAGTTAACATCCATCACCA-----------TGTTTGAC
TTACCTT---GAAATCATTTATTGAGAACATAAATTCTGGGAACCATGGTATTTGGAAGA
>Sus_scrofa
TCTTCCTTAAGGATGGATTTTAATT-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------TCAAATATTTTT-ATT--
----AATAATAAGACATTA---------TT---TGTTTGACTTACCTT---------TTGTTGGCATGGGAGGAAATGCT
TAACACAGTGAATAGCACATAACAGATGT---ACAATAAATGACAATTTAAAACAAATCAGAACAACATAAACAGGACTG
GTTTTGTTGGGGTTTTTTGTTTGTTTTTAGTGCTTCAGTCTATCTTTATTTTTATTGTTTTATGGCCACACCTGAAGCAT
ATGGAAGTTCCCCAGCCAGGGACTGAATCTGAGCTGGAGCTTTGACCTAGGCAGCCACTGTGGCAATGCCAGATCCTTTA
ACCCACTGTGCTGGGCTGGGGATTGAATCCATGCCTCTACAGTGATCTGAGCTGCTGCAGTTAAGAGTTTTTTCTTTTTT
TTTTTTTTTTTTTTTTTTGCTTTTTAGGGCTGAACCCGTGGCATATGGAGGTTCCCAGGCTAGGGGTCGAAATGGACCTG
CAGCTGCTGGCCTACACCACAGCCACAGCAACATGGGATCCTTAACCCACTGAGTGGAGGCCAGGGATCAAACCTGTATC
CTCATGGATCCTAATCAGGTTCATTAACCGCTGAGCCACAAGGGGAACTCCTGAAGTCAGATTCTTAACAGATTGCTCCA
CAGTGGGAATTCCTCTTTCTTTTAACTTCCT-AATTTTGTCATCCTTTT-GGGTACCAGTCT---TTCTTTTTTAATTGA
A-GTATGATCGACTTCTATAACAT----------TA-CATTCGTTTTAAGTGTACAACATAATGATTCAATGTTTGTAAA
CACCACAAAATGATCACAACATAAGATCACAGACAAAAAT-CTGGTTAACAACCATCACTA-----------CATTTGAC
TTACCTT---GAAATCATTTATGGAGAACATAAATTCTGGAAACCACGGTATTTGGAAGA
>Vicugna_pacos
TTTCCCTTAAGGATGGATTTTAATT-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------TTACATGTTTTTCATTA-
----AAAAATAATATATTA---------AT---TGTTTGACTTGCCTC---CCCCTTTTTTTTGCATACGAGGAAATGCC
TA-----ATGCACGGCATGTAACTGACAC---ACAATAAATGCTTATTTAAACCAGATCAGAACAACACGAGCAGGACTA
GCTTTGTGGGGGTTT---GTCTGTCTTCAGTGCTTCAGTCTATCTTTGT-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------GAT-TTTTAGCTTCCT-AGTTTTGCCATCCTCTT-GGGCGTCAGTCT---TTCTTTTTTAGTTG-
--TTACATTTGACA--TATAGCAT----------TG-TATTAGTTACAAGGATACAACATAATGCTTCAATATTTGTATA
CATT-CAAAATGATCATCACA-------------ATCAGT-CTGGTTAACATGCATCCCCA-----------TGTTTGAC
TTACCTT---GAAATCATTTATGGAGAGCATAAATTCCGGGAACCATGGTATTTGGAAGA
>Equus_caballus
TCTTTCTTAAGGATGGACTTTAATTTAAAATGTTTTTCAGGGGCCGGCCTGGTGGTGTAGTGGTTAAGTTCATGCACTCC
ACTTCAGCAGCCCTGGGTTTGCAGGTTCAGATCCTGGGCGTAGACCTAGCACCACTTATCAAGCTATGCTGTGGCGGCAT
GCCACATAAAATAGAGGAAGATTGGCAACAGCTGTTAGCTCAGGGCCACTCTTCCTCACAAAACAAACAAATAAAGTAAA
TAAATAAATGCTTGGGCAAAAAAAAGAGTATCTACATAAATTATTAAAAAAATAAAATAAAATAAAATGTTTTTCATT--
----AATAATAATATATTA---------TT---TGTTTTACTTAACTT--------TTTCTTTGCGTAGGAGGAAATGCC
CAATACAGTGCACAGTATGTAACAGATGTATAATAATAAATGATTATTTAAAACAAATCAAAACAACATAAGCAGAACCA
GTTCTT------------TTTTTTTTTTAGCACTTCAGT----CTATATTT-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------TAT-TTTTAACTTCCTAAATTTTGTCATACTATT-GAGCACCAGTCTT--CCTTATTTTTATTTA
G-GTATAATTGACA--TATAACAT----------TA-TATTAGTTTCCTGCATACACCATAATGATTCAACATTTGTATA
CATCACAAAATGATCACCACA-------------GTAAGT-CCAGTTAACACCCATCACCA-----------TGCTTGGC
TTACCTT---GAAATCATTTATTGAGAACATAAATTCTGGGAACCATGGTATTTGGAAGA
>Ceratotherium_simum
TCTTTCTTAAGGATGGACTTCAATT-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------TAAAATGTTTTTCATT--
----GATAATAATATGTTA---------TT---GGTTTCACTTACTTT------TTTTTTTTTGCATAGGAGGAAATGCC
TA--ACAGTTCACAGTACATAACAGATGTTCAATAATAAATTATTATTTAAAACAAATCAAAACAACATAAGCAGGACCA
GTTCTTTT----------TTTTTATTTTAGTGCTTCAGT----CTACATTT-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------TAT-TTTTAATTTCCT-AATTTTGTCATACTTTT-GAGCACCAGTC----TTTTTTTTTTATTGA
G-GTATAATGGACA--TATAACAT----------TA-TATTAGTTTCATGTGTACACCACAATGATTCAATATTTGTATA
CATTGCAAAATGATCACCACA-------------GTAAGT-CAAGTTAACATCCATCACCA-----------TGCTTGGC
TTACCTT---GAAATCATTTATTGAGAACATAAATTCTGGGAACCATGGTATTTGGAAGA
>Myotis_myotis
TCTTTCTTAAGGATGGACTTTAACT-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------TAAAATATTT--------
-----------------------------------------------------TTTTGTTTTTGCATAGGAGGAAATGCC
TAACACAGTGCCCACAATATAACAGATGT---TCAATAAATGGTTATTTGAAACAAAGCAAAACAACACAAGCAGGACCA
GTTCTTTT----------CTTT--TTTTAATGCTTCAGTCTATC-----TT-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------TAT-TTTTAACTTCCT-AATTTTGTCATCTTCTTAGGGCACCAGTCTTTTTTTTTTTTTAATTGA
G-GTATAATTGTCT--TATAACAG----------TAGTATTAGTTTCAGGTGTTCAACATAATGATTTGCTA-TTGTATA
CATTGCAAAATGACCACTGCA-------------ATTAGCACTGGTTAACATCTATCACTA-----------CATATGAC
TTACCTT---GAAATCATTTATTGAGAACATAAATTCTGGGAACCATGGTATTTGGAAGA
>Rousettus_aegyptiacus
TCTTTCTTTAGGATGGACTTTAATT-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------TAAAACGTTT--------
---------------------------------------ACTTTTTTT------------TTTTCTTAGGAGGAAATGCC
TA--ACAGTGCACAGCATATAGCACATAT---GTAATAAGTGATTATTTAAAACAAA-----ACAACATAAGTAAGACCA
ATTCCT------------------TTTTAGTGCTTCAGTC----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------TATATTTTAACTTTCT--AATTTGTCATCCTCTT-GGGCGCTAATCA---TTTTTTTTTAGTTGA
G-GAATAATTGATA--TATAACAT----------TAGTATTAGTTTCAGATATATAGCATAATGATTAGATG-TTGTATA
CATTGCAGAATGATCACCACA-------------GTAAGTACTAGTTAACACCCATCACTA-----------TGTCTGAC
TTACCTT---GAAATCATTTATTGAGAACATAAATTCTGGAAACCATGGTATTTGGAAGA
>Condylura_cristata
ACTTTCTTAACGACGGGCATTTATT-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------TAAAATGTTTTTCATT--
----AACAAGCATACACTA---------TT---TTTTTGACTTACCTT--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------GAAATCATTTATTGAGAACATAAATTCTGGGAACCATGGTAATTGGAAGA
>Sorex_araneus
TCTTTCTGAAAGGTATACTGTAATT-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------TGAAGTGTCTTTCATT--
----AATAACAATACAACA---------TT---TGTTCAACTTACCTT--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------GAAATCATTTATTGAGAACATAAATTCTGGGAACCATGGTATTTGGAAGA
>Homo_sapiens
TTCTTCTTAAACGTGGACTT------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------TAAAATATTTTTCATTAA
TAATAATAATAATACATTATTTGTTTGATT---TGTTTGGCTTACCTT--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------GAAATCATTTATTGAGAACATAAATTCTGGGAACCATGGTATTTGGAAGA



Dog415_LINE

>L1_CARN7_3END
--------------------------------------------------------------------------------
----------TGGTGATCACTTCACAATGTATACAAAT------------------------------------------
---------------------------------------------------------GTCGAAT----------------
----------CACTATGTTGT-----------------------------------------------------------
--------------------------------------------------------------------------------
--------ACACCTGAAACTAATATAACATT--GTATGTCAATTATACTCAAATAA------AAAAA-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------
>Canis_familiaris
ATAGGCTG---TGAATATATTT---AGAC-TTTATTCTTTACAGATATTTATCTATT---AATAAAAATATTTAAAACCG
AACTGAA---------------------GCATACAAGT------------------------------------------
---------------------------------------------------------ATTGAAT----------------
-------------CATGTTGT-----------------------------------------------------------
--------------------------------------------------------------------------------
--------ATATCTGAAATTAATACAAAGTT--ATATGTCCATTATACTTCCGTAA------AAAGG----AAAAAAACC
CTACGG--TTTACAAAATAA--------CCCCAAAACTGAAAAAGACAGTTTTTTAAAAAAATTTTTATTTATTTATGAT
AGTCACACAGAGAGAGAGAGAGAGAGAGAGAGGCAGAGACATAGGCAGAGGGAGAAGCAGGCTCCATGCACCGGGAGCCC
GACTTGGGATTCGATCCCGGGTCTCCAGGATCGCGCCCTGGGACAAAGGCAGGTGCTAAACCGCTGCGCCACCCAGGGAT
CCCTGAA---AAAGACAGTTTTATA-TGATATAAAGCAATTGT--ATTTCTTTTAGGAGGTAT
>Felis_catus
ATAGAGTG---TGAATATATTTTACAGAT-TTTTTTCTCCACAGATATTTATCTATT---AATATAAAAATTTAAAACCA
AACTGAA---------------------GTGTACAAAT------------------------------------------
---------------------------------------------------------ACCAAAT----------------
----------CATTATGCTGT-----------------------------------------------------------
--------------------------------------------------------------------------------
--------ATACCTGAAGTCAATATAATGTT--ATATTTCTATTATACTTGAGTAAAAA---GAAAG---AAGTAAAAGA
CTACAG--TTTGCAAAATAA--------CCCCAGAGCTG-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AA---AAAGACAGTCTTATG-TGATATAAAGCAATTAT--ATTTCTTTCAGGAGATAT
>Manis_javanica
ATAGACTG---TGTAT-TATTTTGTAGAC---TTTTCCCCACAGGTATTTGTCTATT-----AACAAAGATTTTAAGCCA
AACTGAA---------------------ATCTACAAATAGGAAACTGTAACTAATATANAATAGCAATACTGCTTATTAT
CCTTAAAAGGAATTATCCACCTATTCTGTAAAAGGTTAATTAGTCATAAGGGATATAATTAAATATAGACTGTGTATTAT
TTTGTATTTGTATTATTTTGTAGACTTTTCCCCACAGGTATTTGTCTATTAACAAAGATTTTAAGCCAAACTGAAATCTA
CAAATAGGAAACTGTAACTAATATANCAAAGATTTTAAGCCAAACTGAAATCTACAAATAGGAAACTGTAACTAATATAA
TGAAACTAATACCTGAAACTAATATAATGTTACACATGTCAGTTATACCTCAATAAAA----GGAAA---AAAGAAAAGA
TTGCAG--TTTATAAGAAAA----ATAA---CAAAACTG-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AA---GAAA----ACTTAGA-TGATACAAACTGATTT---ATTTCTTTTAGGAGATAT
>Sus_scrofa
ATTGACTA---TGAATACATTTTACAGACTTTCCCGTCCTACCCATTGTTTTCTGTT---AGTCTAAAAATTTAAAACCA
GA-TGAA--------------------GGCATACAAAT------------------------------------------
---------------------------------------------------------GTCAAAT----------------
----------CATTACATTGA-----------------------------------------------------------
--------------------------------------------------------------------------------
--------ACACCTGAAACGAAT---ATGTT--ACATGTCAATTATAGCTAATTAAA-----TAAAA---GAAGAAAAGA
CTAGAG--TTTAAAAAAAAA----AAATCCCCAAA-GAG-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AA---AAAGACAGTC--ATG-TGATATAAAGCCTTTAT--ATTTCCTTTAGGAGATAT
>Bos_taurus
ATAGACTA---GAAATACATTTTACAGAC--------CCGCCCCGTAGTTTTCTATT---AATATGCAAATTTAAAACCA
GACCGAA---------------------GCATACAAAT------------------------------------------
---------------------------------------------------------ATTAAAT----------------
----------CATTGTGTTGA-----------------------------------------------------------
--------------------------------------------------------------------------------
--------ATACCTGAAACTGCT---ATGTT--ACATGTCAACGGAAGCTCCATT-------AAACA-------------
-------------------------------------------G------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AA---AAAG--------ATA-CGATATAAAGCAATTAT--ATTTCTTTTAGGAGATAT
>Equus_caballus
ATAGACAG---TGAATATATTTTACAAACTTTTTTCCCCCACGGGTAATTGTCTATT---AATATAAAAATTTAAAACCA
AACTGAA---------------------GTATACAAAT------------------------------------------
---------------------------------------------------------ATCGAAT----------------
----------CATTTTGTTGT-----------------------------------------------------------
--------------------------------------------------------------------------------
--------ACACCTGAAACTAATATAATGTT--ATATGTCACTTATACCTCAATGA------AAAAA----ATGAAAAGA
TTGCAG--TTTACCAAAAAGA---AAAACCCCAAAAAACAACTA------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AA---AAAGACAGTCTTATA-TGGTACAGAGCAATTAC--ATGTCTTTCAGGAGATAT
>Ceratotherium_simum
ATAGACTG---TGAATATATTTTACAGAC-TTCTTCCCCCACAGGTAGTTGTCTATT---AATATAAAAATTTAAAATCA
GACTGAA---------------------GTATACAAAT------------------------------------------
---------------------------------------------------------ACCAAAT----------------
----------CATTAAGTTGT-----------------------------------------------------------
--------------------------------------------------------------------------------
--------ACACCTGAAACTAATATA-------ATATGTCAATTATATCTCAATAAAAAAAGGAAAA---AGAGAAAATA
CTGCAG--TTTACCAAAGGAAGAAAAAAGCCAAAAAGCG-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AA---AAAGACAGTTTCATG-TGATACAAAGCAATTAT--ATTTCTTCTAGGAGATAT
>Myotis_myotis
ATACAC-----TAAATATTTTTTGTAGAC----TCCCCCCAAAGGTAATTGTCTGTT---ATTATAAAAATTTAAAACCA
AACTAAA---------------------GTATGCAAAT------------------------------------------
---------------------------------------------------------ATCAAAT----------------
----------CATTGTGTTAT-----------------------------------------------------------
--------------------------------------------------------------------------------
--------ACACCTGAAACTAAT---ATGTT--ATACGTCAATTATACCTCAATTT------AAAAA---AAAGAAAAAA
CTG-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AA---AATTATGGTCTTTTG-TAATATAAAGCAATTATACATATTTTTTAGGAGATAT
>Rousettus_aegyptiacus
ACAGACTT---TGAATATATATTACAGAC-TCCCCACTGCACATGTAATTGTCTATT---AGTATAAAAATTTTAAACCA
AACTGAA---------------------GTATGCAAAT------------------------------------------
---------------------------------------------------------ATCAAAT----------------
----------CATTATTTTGT-----------------------------------------------------------
--------------------------------------------------------------------------------
--------ACACTTGAAACTAATATAATGTT--ATATGTTAATTATACCTCAATTTAAAATAAAAAA---GGAAAAGAGA
CTGCAG--TTTATAAAAAAAGAA-------CATG----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AA---AAATATGGTCATA----AATATGAAGCAATTAT--ATTTCTTTTAGGAGATAT
>Condylura_cristata
ATAGGTGG---TGAATATATTTTACAGACTTCCCCCAGCTTCCATTTTTTATCTGTT-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------AATAT-----
-AGTAG--TTTAAAA-------------CCCATCTG--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AA---AAAGACTGTCTAATA-TGATATAAAGCAGCTTT-TTTTTCTTTTAGGAAATGT
>Erinaceus_europaeus
GAAGAT-----TGAATAT-CTTTACAGACTCCCCTCACACCTAAGTTATTGTCTGCT-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------AACA------
-TGCAAA-TTTAAAA-------------GCCAACTGG-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----AA---GAAGTCCGTCTTATATTGGTATAAAACAATTAT-TTTTTTTTTCAGGAGATAT
>Homo_sapiens
ACGGACTTCACTGAGTATATTTTACAGGC--TTTTTCTCCACAGGTAGGTGTCTACT-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------AATATAAAGA
-TGTAAAATTTAA---------------ACTG------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----GA---AAAGACAATCTCATA-TGATATAAAACAATTAT--ATTTCTTTTAGGAGATAT



Dog418_LINE

>L1_CARN7_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------ATATTGTANTAACNTTGTATGGTGACAGATGGTAACTAGACTTA-----TTGTGGTGATCACTTCAC
AATGTATACAAATGTCGAATCACT-ATGTTGTACACCTGA--AACTAATATAAC--ATTGTATGTCAATTATA-CTCAAA
TAAAAAAA------------------------------------------------------------------------
-----------------------------------
>Canis_familiaris
CCAGGCAGTCAGG-ACTTTCTCT---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------TCTGACACAGCAAATTTATGGGTAGTTTTATAG---AAA
ACTATGTTTT----------TGTAACTATCTATGGTGAGGGATGTCAACTAGACTTG-----TTGTAGTGATTATTTCAC
AATAGATACAAA-------TCATTTATGTTGTATACATGA--AAC------------ATCTATATCAATTATATCTCAAT
TTTTTA-------AAATAT----AGG---GAAAGTCATATATTTA-AACACTGGAATGCATTTCC------ATCAGAAAA
AGGGTTT-CAGTGGTGATTATG----TTCCCAGGT
>Felis_catus
CCGGGCAGTTTTG-ACTTTCTCC---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------TCTGACACACCAAATTTATGGCTAGTTCTACAC---AAA
GGTATTTTTT----------TGTAATTATGTATGGTGAGGCATGTCAAGCATACTTA-----TTGTAGTGATCATTTCAT
AATAGGTACAAATG-----TCATTTATGTTGTATACCTGA--AATTAA------------CATGTCAATTATACCTCAA-
--TTTA-------AAAAAAATGCAAC---AAAGTCCCCTTATTCA-AAAACTGGAATGCATCCCCCCTCCCAACATAAAA
AGGCTTC-AAGTGGTGACTGTA----TTCCCATGT
>Manis_javanica
TCAGGAAGTCATG-ACCTTCTCA---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------TCTTACACAGCAAATTTATGAATAG-TTTATAT---AAA
ATCATGTGTT----------TGTAGTTATGTATGGTGACTGATGTTACCTAGACTTA-----TTGTGGCGATCATTTCAC
AAAGTGTACAAATATCAAATCATT----GTGTGCACATGA--AACTAGTCAAACTAGTGTTATGCCAATTACACCTCAA-
----TAAAAA---GCACACATGCATT---CAAAGTCCCTTGTTCA-GAAATCAGAATGCATTTCCTCCAATAAAA-----
AGGCTTT-AAGTGGTGACTAAA----TCTCCAGGT
>Sus_scrofa
TCAGGAGGATATGTACACGATTTAGACGGCAAACTTTTTTTGTCTTTTCTAGGGCTGCTCCCACAGCATATGGAGATTCC
CAGGCTAGGGGTCGAATCAGAGCTGTAGCTGCCGGCCTATGCCAGAGTCACAGCAACGTTAGATCCAAGCCGCATCTGCA
ACCTACACCACAGCTCACGGCAACGCCGGATCCTTAACCCACTGAGCAAGGCCAGGGATCGAACCCGCAACCTCATAATT
CCTAGTCGGATTCGTTAACCCCACTGCACCACGACGGGAACTCCTAAACCGCAAACTTCTGACCTGCTTTCTAT---AA-
--CGTGTTTT--------TTTTTAACTATGTATGGTGACGAGTGTTAACCAGACTTAACTAGCAGTGGTGATCACTGCAC
AGTACATACCAATATCAAGTCACT-ATGTTGCTCATGGTATGTACTGGTAG-----GCTGCATGTCAACTATACCTCAAA
AAAAAAAAA----AA----ATGCATG---CAAAGTCACTTGTTCA-AAAAT--GCATGTATGTCCCCGACTAATA-----
AGGCTTT-AAGTGGCAAT--------TCCCCAGGT
>Bos_taurus
TCAG-AAGTCACT-AC----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------ACCGAGACAGC-AATTAACAAATAGCCTTCTAG---GA-
--TGTATGTT----------TGTAACTATAGACAGTGACAAATGTTAACTAGACTCA-----CTGTGGCGATCGCTGCAC
AACACATATAAACAGCACATCATT-GTGTTA-ACACCTGA--AACGAGGGT-----GCTGCATGTCAACTATACCTCAA-
------AGA----AC----AGGCATG---CAAAGTCTCCTGTCCA-GAAACTGGGATGCACCTCCTCAAATCATA-----
AGGCTTT-AAGTAAGGATTAGA----TCCCCAGGT
>Equus_caballus
TCAGGGAGTCACG-ACCCTCTCT---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------CCTTACACAGCAAAGTGATGAACGGTTTTACGT---AAA
AACATGTTTT----------TGTAACTCTGTATGGTGACAGACGCTAACCAGACTTA-----TTGCGGTGATCATTTCAC
AATACATACAAAGATCCAATCATT-ATGTTGTACGCCTGA--AACTAATATAAT--GTTCTACGTCAATTATACCTCAAT
AAAAAAAAG----AAACACAG--GTG---CAAAGTCACTTGTTCA-GAAATTGGAATGCATTTCTCCCCATAATA--AAA
AGACTTTAAAGTGATGCCTAGA----TCCCCACGT
>Ceratotherium_simum
TCAGGAAGTCTTG-ACTTGCTCT---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------TCTTACACAGCGAACTGATGAGTAGTTTTATAT---AAA
AACGTATTTT----------TGTAACTCTGTATGGTGACA-ATGTTAACTAGACTTA-----CTGTGGTGATCATTTCAC
AATACATACAAATATCAAACTATT-ATGTTGTACACCTGA--AACTAATACAAT--GTTATATGCCAATTCTACCTCAA-
TAAAAACAA----ACAAACATACACA---CACAGTCACTCGTTCA-GAAATTGGAATGCATTTCTCCCCATAATA--AAA
AGGTTTT-AAGTGATAACTAGA----TCCTCAGGT
>Myotis_myotis
CCAGG-AGTGGCG-----TCTCT---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------TCTCACAGAGCAAATGGACGAATGGTTTTACAT---GGA
AACATGCTTT-----------GCATCTGTGTG-GGGGACGGGTGCTCCCTGGACCTA--------TTCTGACTGCTCCCC
AGTAGATACAAATACCGGGTCATA-ACGTTA-----------------------------CGTGTC---CACACCTCAAT
TTGAAACA-----ACACGCACGCACG---CGAAGG-GACTGTTCA-GAACTTGGAACGAACGGCACCCCGGGACA--AGA
GGGTTT---AGTGGGGACTGGACCGGCCCCCGCGT
>Pteropus_vampyrus
TCAGAAAGTCATG----GTCTCT---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------TCTTACACCATAAATTTATGAATAGTTTTATAT---AAA
AATATGTTTT----------TATAACTATGTGTGGTGACG-ATGTTAACTAGACTTA-----------TGATCATTTCAC
AATAAATACAA---TTGAACCATTAATGTTGTAAAACTGA--AGCTAATAG--------TTATGTCAATTATACCTCAAT
TAAAAAAAA----ACAAACGT--ATT---CAAAGTCATTTGTGCA-GAAATTGGAATGGATGTCCCCCTGTAACC--AAA
AGGCTTT-AAGCGGTGATTAGA----TCCCCAGGT
>Condylura_cristata
TTAGGAAGTCATG-ACTTTCTTT---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------TATTACATAGCAAGTGGATGAATAATTTCATAT------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------AAATACATGC-GT---CAAAGTCATTTGTTCACAAAAAGGGGGTGCATTTTGCCCCCTAATA--AAG
AGACCTG-AAGTGGTGACTCCA----TCCCCAGTT
>Solenodon_paradoxus
TTTC-AAGTCAGA-ACATTCTCT---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------TCTTATACAACAAATTGATGAATAGTTCTGTAT------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------AAAAATTTACATT---CAAAATCACTTGTTCA-GAAACTGGAATGCATTTGTTCC----ATAATAAA
GGACTCT-AAGTGGTAACGAGA----TCCCCAGCT
>Homo_sapiens
TCAAGGAGGCATG-ACTTTCTCT---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------TCCTACACAGCAAATGCATGAATAATTTTACAT------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------AAAAACATGTATT---CGCAGTCACTTGTTCA-GAAACTGGAAGGCATTT-----------------
--------------------------TCCCCAGGT



Dog419_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------AAATACTGCATGATCTCACTTATATGTGGAATCTAAAAAAGTCAAACT
CATAGAAGCAGAGAGTAGAATGGTGGTTGCCAGGGGCTGG--------GGGGTGGGGGAAATGGGGAG------------
-----------ATGTTGGTCAAAGGGTACAAAG-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------TT
TCAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGTACAGCATGGTGACTATAGTTAATAATACTGTATTGTATACT
TGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCACCACACACAAAAAAA-------TGGTAACTATGTGAGGTGATG
GATATGTTAAT---------TAGCTTGATTGTGGTAATCATTTCA-----------------CAATGTATACGTATAT--
-CAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATT------------------------------------
---------------------------------
>Canis_familiaris
TGTTTTTCACA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------AATCACAGAAAC-A--CTGAGGTTGAA
GGACCCATTTAAAGTTA---TCATTTAAA---AAAAGTGAAATAGAATAAAAC---------------ACAAATCACGGT
CTTAGATATGGAGAACAGATTGGTGATTGCCAAAGGTAGGGCACGG--GATGTGTAGAAAAT-GGGTG------------
-----------AAAGGGGTCAAAAGGTAGAAAC-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------TT
AGAGTTAT--AAA-----TAAGTCATGGGGATATAATATACAGCAGGGTCACTATAGTTAAT--TTCTGAATTGCATATT
TGCAAGTTGTGAAGAGGGTAGATCTTACAAGTTCTTATAACAAGAAAAA----AATTTTTTGTAACTATGTATGGTGATG
G--ATGTTACT---------TAGATGTACTGTGGTGGTCATTTCA-----------------TAATATATATTAATAC--
-TGAATCAAAATCGGTA----------CATGTAAAA-----------TTATTTTTA---TACCTA-GCTATGTGTCACAC
ATAACCTCTTCT-AAATTGGGTGCTATCAAAGT
>Felis_catus
TGTTTTCCACA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------AATCATGGAAACAA--CTGAGGTGGAA
GGATCCATTTAAAGTTA---TGATTTAAA---AAAAATGAAACAAAATAAAGC---------------AGAAATCAGGCT
CTTAGATGCAGAGAACAGATTGGTGATTGCCAGAGGTGGGGGGTGG--GAGGTAGAACAAAT-GGGTA------------
-----------AAAGAGGTCAAGAGGTACAAAC-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------TT
ACAGTTAT--AAA-----TAAGTCATGGGTATATAATATCCAGTTTGGTCACTGCAGTTAA---TACTGAATTGCATAGT
TGAAAATTGTAAAGAGAGTAGATCTTAAAAGCCCTTATCACAAGAAAAA----TATGTTTTGTAACTACGTATGGTGACA
G--GTGTTACC---------TAGACTAATCATGGCGATCGTTTCA-----------------TAATATA---AAATAT--
-TGAATCAAAATCTGTC----------TCCATAAAG-----------TTATTTTTG---TATCTC-GCTACACGT--CAC
GTAA---CTTCT-AAATAGTGTGCTATCAAAGT
>Manis_pentadactyla
TGTTTCCCACA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------CTTGAAGTAGGAAGACTGATTTGAAGTAGGA
GGACTGATTTAAAGTCA---CCACTTAAA-------ACAAAAG-------------------------AAAAGCCAAGCT
CAGAGGTACAGAGAACAAATCAGTGGCTGCCAGAGGCTGGGGGTTGA-TGGGCAGGCAAAAT-GGGTG------------
-----------AAGGGTGTCAAAAGGTACGGACT----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------TT
TCAGTTAT--AAAATAAAGAAGTCCTCAGGATGCAATGTACAGCATGGTCACTATAGTTCATTGTATTGAGTTGCATATT
TGAAAGTTGCTAAAAGCATAGATCTTAAAAATCCTCCCAATAAGAAAAA--AAATTTTTTTGTAACTATGTATGGTGACA
G--ATGTTAAC---------TAGACTTATTATGGTAGTCATTTGA-----------------CAATATATACAAATAT--
-CAAATAAAAAACATGC-------AAGCAT--------------------TTTTTA---TACCTA-GA---------CAC
ATAACCTCTTCT-AAATAGTGTGCTATCAAAGG
>Sus_scrofa
TGTTATCCACA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------AATTATGGAAAATG--CTAAAGTGGAA
GGACCCATTTAAAGTTA---TTATTTTAA---AAAAACAAAAC-------------------------AAAACCCAAGAT
CATAGATATGGAGGACAGATGGATGGTTGCCAGAAGTGAGGGCTGGT-GAGGTGGGCAAAAT-GTGTG------------
-----------AAGGGCATCAAAAGGTACAGGC-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------TT
CCAGCTAT--AAAATAAATACGTTCTGGGAATGTAATGTAAAGCAGGGTCACTGGAGTTAA---TACTGAATTGCATATT
TGACAGTTGCTAAGAGAGTAAATCTTGAAAGTCCTCATCACAAGAAAAAACA-CTTTTCTTGTAACTATGTATGGTGGTG
G--ATGTTAACTTAAATGCATAGACTTATTGTGGTGATCATTTTGCTATACATATATATTAGCAATATATACACATATAT
ATATATCAAGGA------------AAAAATTTAAAG-----------TAATTTTTA---CATCAAGGACACATGT--CCT
ATAACCTCTTAA-AAATAGTGTGCTATTAAAGT
>Bos_taurus
TTTTTCCCACA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------AATCATGGAAAC-A--CTGAGGTATAA
GGACTCATTTAAAGTTA---TTATTTTAA---AAAAACAAGAC-------------------------AAAAACCAAGTT
CACAGATACAGAGAACAGACTGGTGATTGCCAGAAGTGAAGTGGTTGGGAGATGGGCAAAAT-GTGT-------------
--------------GGAATCAAAAGGTACAGACTTCTGCTGCTGCTGCTGCTAAGTCGCTTCAGTCGTGTCCGATTCAGT
GTGACCCCAGAGATGGCAGTCCACCAGTCTTCCCCGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATT
TCCTTCTCCAGCGCATGAAAGTGAAAAGTGAAAGTGAAGTTGCTCAGTCGTGCCCTACTCTTCTCGACCCCATGGACTGC
AGCCTACCAGGCTCCTCTGTCCATGGATTTTCCAGGCAAGAGTACTGGAATGGGGTGCCATTGCCTTCTCTGACAGACTT
CTAGCTAT--AAAATAAATAACTTCTGGGGATGTAAGGTACAGCAGAGTCA-TATAGTTAGCAGTATTGAACTGCATATT
TAAAAGTTGCTAAAAGAGTAAACCTTAAAAGTCCTTATCACAGGAAAAA----GATTTTTT-------TGTATGGTAAAG
G--ATGTTAAC---------TAGACCTATTATA------AATTTG-----------------CAATATACATAAATAT--
------CAAAAAGTTTA---------ACATATAAAG-----------TTATTTTTA---TATCTA-GATGCATGT--CAC
ATTGCCTCTTCTGTTAAAGTGTGTTATCAAAGT
>Equus_caballus
TGTTTTCCACA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------GATAGTGAAAAC-A--CTCAGGTGGAA
GGACCCATTTAAAGTTA---T-ATTTTTG---AAAAACCAAACCAAACCAATC---------------AAAACCCAAGCT
CATAGATAGAGAGAGCAGATTGGTGGTTGCCAGAGGTGGGGGTTGG--GAAGTGGGC-AAAT-GGAT-------------
--------------GGAGTCAAAAGGTACAGAC-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------TT
CCAGGTTA--GAAA-ATAAATGTCATGAGGATGTAATGTACAGCCTGATGACTATAGTTAATAATTCTGAACTGCATATT
TGAAAGTTGCTAAGAGAGTAGATCTTAAAAGTCCTCATCCCCAGAAAAA--A-ACCTTTTTGTAACTATGTATGGTGATG
G--ATGTTAAC---------TAGTCTTATTGTGGTGATCATTTTG-----------------CGATATATACACGTAT--
-TGAATCAAAAAGATTAAA-----AAATATATAAGG-----------TTATTTTTA---TATTTA-GACACAC----CAC
ATAACCTCTTCT-AAATAATGTGCTATCAAAGT
>Tapirus_indicus
TATTTCCTACA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------AATCATGAAAAC-A--CCGAGGTGGAA
GGACCCCTTTAAAGTTA---TCACTTTTA---AAAAACAAAACAAAA-----C---------------AAAAACCAAGCT
CATAGATACAGAGAACAGATTGGTAGTTGCCAGAGTTGGGGGTTGG--GGAGTGGGC-AAAT-GGGTG------------
-----------AAGGGAGTCAAAAGGTACAAAC-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------TT
CCAGTTAT--AAAA-TCATAAGTCACGGGGATGTGATGTACAGTGTGGTGACTATAGCTAATAATACTGAATTGCATATT
TGAAAGTTGCCAAGATAGTAGATCTTAAAAGTCCTCACCCCAAGAAAAA--A-TTTTTTTGGTAACTATGTATGGTGATG
G--ATGTTAAC---------TAGACTTATTGTGGTAATCATTTTG-----------------CAATATGTACAAATAT--
-TAAATCAAAAAAATAAAG-----AAATATATGAAG-----------TTATTTTTA---CACTTA-GACACATGT--CAC
ATAATCTCTTCT-AAATAGTGTACTATCAAAGT
>Myotis_myotis
TGTTTTTCACA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------AATCATGAGAAA-A--CTAGGATGAAT
GCATCCACTTAAAGTTA---TTATTTAAA------AACAAAAC-------------------------AAAAAACAAGCT
CACAGATACAGAGAACAAATTGGTGGTTTCCAGAAGCCAGGGGTGGTGGTGGTGGCGGCGATGGGGTGGTGGTGGTGGGG
GGGGGGGGGTAAAGGGGGCCGAAGGGTACAAATTTATTA-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------TT
CTAGTTAT--AAAAGAAATAAGCCCTGGG-ATGTAATGCACAGCGTGGTCACTATAGTTAATAATACTGAGCTGCATATT
TGAAAGTTGCT--GAGAATAGATCTTAAAACTCCTCATCACAAAAGAAAACATTTTTTTTTGTAATTATGTAGGATGACG
G--TTGTTAAC---------TAGATTTATTGTGGTGATCATTTCA-----------------CAATATTTACAAATAC--
-CAAATTTAAAA--------------------AAAG-----------TTATGCTTA---TATCTA-GACATT-----CAT
ATAACCTCTTCTAAAAAAGTGTACTGTCAAAAT
>Pteropus_vampyrus
TGCTTTCAAAATAAATGAATGGGACTACATCAAACTAAAAAGCTTCTGCTCAGCAAAAGAAACCTTCAACAAGGTAAAGA
GACAACCATCCAAATGGGAGATTATATTTTCAAGCAATGCCTCTGATAAGGGCTTAATATTCAAAATATACAAAGAACTC
ATACGACTCAATAACAACAAAAACAAACAATCCAATCAAAAAATGGGCAGAGGACCTGAACACACACTTTTCCCTAGAGG
ACAGACAAATGGCCAACAAACATATGAAAAGATGCTCAACATTGCTCACTATTAGGGAAATGCAAATCAAAACCACAATG
AGATACCATCTCACATCTGTTAGAATAGCTATAATCAACAGGACAAGTAATAACAAATGTTGGAGAGGATGCGAAGAAAA
AGGAACCTTCATACACTGCTGGTGGGACTGCAAATTGGTACAGCCACTATGGAAAACAGTATGAAGGTTCCTCAAAAAAC
TAAGAATTGATCTACCATATGATCCAGCAATCTCTCTACTGGGTATTTACCCCCAAAACTTGAAAACCCATATCCGAAAC
CCATATTTGCACACTGATATTCATAGCAGCATTATTCAGTGGCCAGGACATGGAAGCAATCGAAGTGTCCTATGATAGAT
GATTGGCTAAAGAAGCTGTAGTACATATGTACAATGGAATATTACTCAGCCATAAGAAGAGATAGAATACTGCCATTTGT
GACAACATGGATGGACCTCAAGATGATCATGCTAAGTGAAATAAGCCAGACTGAAAAAGTTGAAAATCACACGATATCAC
TTATATGTGGGATATAAACCTAAAAGCAACAAATGAACAGGACATACAGAGACTCGGGAATATGGACAATGGACTAGTGG
TTACTAGAGGGTAGAGGGTGGAGGAGGTGGGAAGAGGTAGACAGGGTAAAGGTGGTCAATTATAGGGGGTTTAAGGGAGA
GTGAAGTGGGTAAAGGGGATCAAATATATAGTAGCTGAAGGAAACTGGACTCTGGGTGGTAATCACACTGTAGGATATAT
AGATGTCAAATTATAATGTACATCCTAAAATTATATAATCGTATTAACCAATGTTACCCCAATAAACTTAAAAAAATAAG
AATGAAAAATAATAAAAAATAAAACTTCAAAATAAAATGTGTTGCTTTCTACAAATCATGGAGAA-A--CTAAGATGGAA
GGACCCATTTAAGGTTG---TTTTTGAAA-----AACCAAACCAAAACAAAAC---------------AAAAACCAAACT
CATAGATTCAGAGAACAAATTGGAGGTTGCCAGAGAAGAGGAGTTGTGGGGATGGGAGAAAT-GGGTG------------
-----------CAGTGGGTCAAAATATACAAAC-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------TT
CTAGTTAT--AAAA----TAAGTCCTGGGGATATAATGTACAGCATGGTCTCTGTAGTTAATTTTACTGAATCACATATT
TGAAAGTTGCTAAGAGAGTAGATC-TAAAAATCCTCACCCCAAGAAAAA----ATTTCTTTGTAACTA------------
---ATGTTAAT---------TATACTTACCGTGATGATTGTTTTG-----------------CAATATATACAAATAC--
-CAAATTAAAAAAGTTC------------------------------CTTTTTTTA---AATCTA-AACACCTGT--CAC
ATAATCTCTTCT-GAAAAGTATGCCATCAAAGT
>Condylura_cristata
TGTATTCCACA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------AATCATAGAAGG-A--CTGAGTAGGAA
GGACACATTTAAAATGA---TCATTTTTG---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------CATCTA-GATCCCTAT--TAT
ATAACCTCTCCT-AAATAGCATCCTATTAAAGT
>Sorex_araneus
TGTTTTTG--A---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------AAATTTGGAACT-A--GTGAACTTAAT
AGATACAGCTAA---AG---TTATTTTTA---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------TATCTA-GACATATGT--CAT
TTGACCTTTTCT-AAATAGTGTGCTGTCAAATT
>Homo_sapiens
TCTTTTCCACA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------AATCATGGAAAC-A--CTGAGCTGGAA
GGACATGTTTAAGGTAA---TCA-TTTCA---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------TATCTG-GATACATTT--CAT
ACAACCTCTTCT-AAATAGTGCTTTATCAAAGT



Dog421_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------ACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGAT
CTAATGTACAG-CATGGTGACTATAGTTAATAATACT---GTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAA
GTGTTCTCA-CCACACACAAAAA-AATGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATT
TCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTC---
----AATAAAGCTGGAAAAA------------------------------------------------------------
---------
>Canis_familiaris
TAAATGTATTACCTGG----------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------TAGGAGGAAGTAT
ATATAATACTGAAAACCTTGGT---GAGAAGTTATGC-----------TCAGA----------ATGTAAGTTCTAGGGAT
GCAATATACAG-CATGGTGACTATAATCAACAATACT---GTATTGTATATCTGAAAGTTGCTAA-----TAGTTCTTAA
AAGTTCTCATTTACAAGAAACAT---TTTTAACTCTGTGAGGTGACGA--ATGTGAACTAAGCTTTCTGTG---ATCATC
TCACAATATATACATACATCAAGTCATCATGTTGTACACCTAAAATGGATGTAA-TGTTTTATGTCCATTATAAATC---
----AATAAAACAGGAAAAAA---GAAAAGTTGTGC---A------------CTATTATAATTTCAGAGGCTTTCTTTAA
GCAGTCCAC
>Felis_catus
TAAATGCATCACGTGG----------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------TAGGAGGAAGGGC
ACACAACACTGAAAAAT---GT---GAGAAGTTGTGC-----------CCAGACGTA--AGATAAATAAGTTCTGGGGAT
GTAATATATAG-CATGGTGACTCTAGTTAACAATGCT---GTATTGTAGATTTGAAAGTTGCTAAGAGAATAGATCTTTG
AAGTTCTCA-CTACAAGAAAAAAAAGTCTTAACTATGTGGGGTGATGA--ATGTTAACTAAGCTTATTACAGTGGTCATT
TCACAATATATACACACACCAAATCATTTTGTTGTACACCTAAAATGAATGCAA-TGTTATATGTCAATTATAAATC---
----AATAAAACAGGAAAAAA---GAAAAGTTATGC---A------------CTATTATAATTTCCAAAGC---------
--AGTCAAC
>Manis_pentadactyla
TAAATACAACACCTGG----------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------TAGGAGGAAGAGG
ATATAATACTGAAAAACT--GT---GAAAAGTTATGC-----------CCAATTATA------AGGTAAGTCCTGGGAAT
GTAATGTACAG-CATGGTGACCA-AGTTAA---TACT---GTATTGCTGATTCGAAAGTTA-TAAGGGAGTACGTCTTAA
AAGTTCTTG-CCCAAAGAAAAAA-AATTGTAAC--TGTGAGGTGATGG--ATGTTAGCTAGGCCTATTGTGGAAATGATT
TCACAATATATACATCTATCAAATCATTATGCTAGATACCTAAAACTAATGCAA--------TAGTAATTATATCTC---
----AATAAAAC--------------AAAGTTACGC---AATGGGTGTCAACTTATTATAATTTCAAAAGCATTACTTAA
GCAGTGAAC
>Sus_scrofa
TAAATGTATCACTTGTGGAGTTCCCGCTGTGGCACAATGGGACTGACAGTGTCTCTTTAGTGCCAGGATTCGTTTGATTC
CCTTGCCCAGCACAGTGTGTGATTAAGGACTGGGTGTTGCTGCAGGTATGGTGTAGGTGCAGCTTGGGCTTGGATTGGAT
CCCTAGCCTGGGAACTCCATATGCCTTGGGGCAGCAGCAAAAGAAAAAAAAAAAATGTATCACTTGGTAGGAAGAAGTGG
CTACAACACTGAAGAACCTTGT---GAAAAGTTATGC-----------CCAGTTGTA------AGATAGTTTCTGGGGAT
GTAACATACAG-TATGGGGACAAGGGTTGACCATACA---GTATTGCATATTTGAAG-----------------------
--GTTCTCA-ACACAAGAAAAAAAAAATGTAACTATGTGAGGTGATAG--ATATTAACTAAGCTTAGAGTGGTAACTATT
TAGCAATATATGCATATATCAAATCATTATGTTGTAAACCTAAAACTAATGCTA-TGCTATATGTCAATTATATCTC---
----AATAAGACAGGAAAAAA---GAAAAGTTATGC---AGTGGGTGTCTAGA----ATAATTTCAGAAGCATTCTTTAA
GCAGTCAAT
>Bos_taurus
TAAATGTATCACTTGG----------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------AAGGAAGAAGTGG
ATACACTTCTGTAACA----------------------------------------------CAAGGAAGTTCTGGGTAT
ATAATGTACAGCCATAGGGACTATAGTTATAGTTATT--AGTATTGCACATTTGAAAGTTGCTTTGGG--TAGATCTTAA
AAGTTCTTA-ACACAAGAAGTAA--ATGATAACTACGTGAGGTGGTTG--GTATACAGTAAACTTATTGCAGTG----TT
TTGCAATATATACAAATATCAAATCATCATTTTGTACACCTAAAACAAATGCTC-TGTTGTATGTTAATTATATCTC---
----AGTAAGACAAGAAAAAA---GAAAAGCTATGC---AATGGGTAT----TTATTATAAATTCAAAAGCATTCTTTAA
GTAGTCAAT
>Myotis_myotis
TACATGCATCACACGG----------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------TAGGGGGGAGTGG
ATACAACACTGCAAAACGTCCT---GA-AAGTTATGC-----------CCAGCTATA--AGGTAAATAACCATTGAGGAT
GTAGTGTACAG-CATGGTGACTAGAGTTAACGATACT---GTATTGTATATTTGAAAGTTGCTGAGAG---AGATCTTAA
GAGTTTTCA-CTACAAGAAAAAA--TGTGCAACTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNN
>Rhinolophus_ferrumequinum
TAAACCCATCACCGGG----------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------TAGAAGGAAGTGG
ATACAACCGTGCAAAACT--GT---GAAAAGTTATGC-----------CCAGTTACA--AGATAAGTAAGGTCTGGGGAT
GTCATATACAG-CATGGTGACTGTAATTCACAATAATACTGCATTGTATACGTGAAAGTTGCTAAGAG---AGACCTTAA
AAGTTCTCA-TCACCAGAAAAAA--ATTGTAAGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNN
>Condylura_cristata
TAAATGTGTTACCTGG----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------AGGGCGAAGTTG
ATACAACATTGAAAAATTG-GT---GATAGGT--TGC-----------CCAGTTATA--AAATAAATAAGTTCTAGAGGC
GGAAGGTACTG-CATGGAGACTTAGGTTAACAGTTC----ACATTGTGTATTTGAAAATTACTAGGAGAGTAGAT-TTAA
AAGCTCTTA-TCACATGAAAAAA-ACTTGTAACT----GGCATGATGG---ACTGAGCTAAGCTAATGGTAGGAATAATT
TTGCAACACACACTTATCTCAAATTG------TGCACATCTAAAGCCAATGAAA-TGTTACATGTCAATAATATCTCATA
TTTCAGTAAGATAGGAAA------AAAAAGTTATGT---AGTAGGTATCTATGTA---------CAAAAGCATTCCTTAA
CTAGTCACC
>Uropsilus_gracilis
TAAGAGCAACACCCAG----------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------TAGGAAGAAGTGA
ACACAACACAGAAAAATTT-AT---GAGAAGT--TGT-----------TCAGTTATA--AAAGAAA----TTCT-GAGAT
GTAATGTGTTG-CATGGTGACTTCAGCTAACAGTACT-CT--CTTGTGTATTTGAAAGTCGCTAAAAGTG----------
-------TG-TCAGAT-AAAAAA-AGTTGTAACTAC--AAGATGATGG---ACTGAGCTAGTCTTATTATAGTAACAATT
TT--AAAACATATTTATTTAAAATTGTTACGGTGCATATCTAAAGCCAATGCAG-TGTTACATATCAATGATATCTCA-A
TAAAAGGGAAAAAGAAAA------AAAAATCCGTAT---AGTGGGTATCTTTATTA--TAAATTCAAAAGCATCCCTTAG
GTGATTAAC
>Equus_caballus
CA-ATGCATCTGCCGG----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------AGGAGGAAGTGG
ACACAACACTGAAACCGT--GT----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------G-AAAGTTATGC---AGTGGGTGCCTACTTATTAGAA-TTCAGAAGCCTTGTTTAA
GCAGTCAAC
>Ceratotherium_simum
TG-ATGCATCTCATGG----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------AGGAGGAAGTG-
ACACAATGCTGAAAACCAGGGT----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------GAAAAGTTATGC---CATGGGTGTCTATTTATTAGAATTTCAAAAGCATTCTTTAA
GCAGTCAAC
>Homo_sapiens
TAAATGCATCACTTGA----------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------TAGGAAGAAGTGG
ATACATCACTGAAAAAGCATCT----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------GAAAAGTCATGC---AACGGGTCT----CTATTTTGGTCTCAAAAGCATTTTTTAA
GCAGTTCAC



Dog422_LINE

>L1MA9_3END
------------------------------------------------------------------------TTAGAATG
GCTATTATCAAAAA-----------------GACAGAAGATAACAAGTG---------TTGGCGAGGATGTGGAGAAAAG
GGAACCCTTGTACACTGTTGGTGGGAATGTAAATTGGTACAGCCATTATGGAAAACAGTATGGAGGTTCC-TCAAAAAAT
TAAAAATAGAACTACCATATGATCCAGCAATCCCACTTCTGGGTATATATCCAAAGGAAATGAAATCAGTATCTCGAAGA
GATATCTGCACTCCCATGTTCATTGCAGCATTATTCACAATAGCCAAGATATG----GAANCAACCTAAGTGTCCATC-G
ACGGATGA----ATGGATAAAGAAAATGTGGTATA--------------TATACAC----------AATGG-AATATTAT
TCAGCCTTAAAAAAGAAGGAAATCCTGCCATTTGTGACAACATGGATGAACCTGGAGGACATTATGCTAAGTGAAATAAG
CCAGGCACAG--AAAGACAAATACTGCATGATCTCACTTATATGT-GGAATCTAAAAAAGTCAAACTCATAGAAGCAGAG
AGTAGAATGGTGGTTGCCAGGGGCT-------GGGGGGTGGGG-----GAAATGGGGAGATGTTGGTCAAAGGGTACAAA
GTTTCAGTTAT------GCAGGATGAATAAGTTCTGGAG-ATCTAATGTACAGCATGGTGACTATAGTTAATAATACTGT
ATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTC-----------------------------ACCAC
ACACAAAAAAA-----TGGTAACTATGTG---------------------------------------------------
-----------------AGGTGAT--------------------------------------------------------
---------------------------------GGATATGT----------------TAATTAGCTTGATTGTGGTAATC
ATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTT-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------TATTTGTCAATTATACCTCAATAAA-----GCTGGAAAAA-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------
>Canis_familiaris
ATAAATCAGAGGTACACAGAGGTGAGATATCCAAAA-GTAGGACTCATTTA---AAGAAAAGCC-ATAA-----------
-ATATCATCAGAAA-----------------GA--------GCTAAGTA---------CTGGCAAGTA------------
GCAACCCTCATGCACCGTGGGAAGGGATGGAAACTGGTAGAGCCATAATAGAAAACAGTATGGAGGTTCC-TCAAAAAAT
CAAAAGTAAAACTGCCATGTGATCTAAAAATCCCACTTCTGGGTATAGATCCAAAGGAAATGAAAGTAAGATTTCTAAGA
GATATCTGTATTCTCATCTTCATTGTAGCA-TATTCATAATAGCCAAGATATGGAGAAAAAAAATCTCAGTGTCCATC-A
GTGGCTGGCTGGCTGGATAAAGATGTTGTGGTAAA--------------TATATAC----------AATGG-AGTATTAC
ACAGCCATTAGAAAGAAGGAAATCTTGCCATTTGCTA-AACATAGATGGACCTTAAGGGCATTATAGTAAGTGAAATAAG
TCAGATAGAG--AAAGACAAA------ATGATGTCACTCATAAGG-GGAATGTGGAAAAGCCAAACTCATAGAAAC----
AGTAAAATGGTAGTTGCCAGAAGCT-------GTGGGGTTGGG-----GCAATGGGGAAATGTTGGTCAAAATGTACAAA
CTTCCAGCTAT-----------------AAGTTGTGAGA-ACCTAACATACAGCATAGTGATTAGAGTCAACAGTGCTGT
ATTACATGTGTGAAAGTTGCTAAGAGAGTAAATCTTAAATGTTCAC-----------------------------AACAC
--AAAAAGAAA-----TGATAATTATGGG---------------------------------------------------
-----------------ATGTGAT--------------------------------------------------------
---------------------------------GGAGGTGT----------------TAGCTAATGCTAACATGGTAATC
CTTTCGTAATACATAAGGGTAGCAAATCAACACAATGCACACCATAAGC--ATATAATGT--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------AATATGTCAATTATATCTCAATAAA-----CCTGGAAAAAA----------
-----TGTTTTTATTTTTTACCCTCAAATATAAAGGA-------------------------------------------
--CAAAGA----------AAAAAAAGAGTAAAA---TTCCAGAGGAAATAATTT---AGTCTTAGGAAGTGGTT
>Felis_catus
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNN-----------
-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATAACAAGTA---------CCAACAATTA------------
-GAAACCGCATGCACTGTTGGTAGCAATGTAAACAGGT---------------------ATGGGGGTTCC-TCAAAAAAT
TAAAAGTAGAACTACCATATGATCCAACATTCCCA-TTCTGGGTATAGATCCAAAGGACACGAAAGCAGGATTTCTAAGA
GATATCTACATTCTTATGTTCATTGCAACATTATTCGTAATAGCCAGGATATG--GGAAAAAAATCTTAATGTCCATC-A
ATGGATAGAGGCATGGATAAAGATGATGTGGTACA--------------TATATAC----------AATGG-AATATTAT
TTAGCCATGAGAGAGAAGGAACTCTTGCCATTTGCAATAACACAGATGGATCTTGAGGGCATTATGGTAAGTGAAATAAG
TCAGATAGAG--AAAGACAAATAGTGTATGATATCACTCACAAGT-GGAATGTGGAAAAGCCTAACTCATAGAAAC--AG
AGTAGAATGGTAGCTGCCAGAGGCTGTAT---GTAGGTTTGGG-----GAAAT-GGGAAATGTTTGTCAAAGTGTACAAA
CTTCCAGTTGT-----------------AAGTTGTGGGG-ATCTAATGTGCTGCATGGTGATTATAGTTAACAATACCAT
ATTACATATTTGCAAGTTGCTAAGACAGTAAATCTTAAATGTTCTCA----------------------------ACCAA
AAAAGAAACAA-----TGACAGG---------------------------------------------------------
-----------------ATGTGTT--------------------------------------------------------
---------------------------------GGAGGTGT----------------TAGCTAACTCTAAGACGGTAATC
ATTTTCTAATACTCAAGTGTAGCAAATCAGCACAATGTACAGCTTAAGC--ACACAATGT--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------AATAGGTCCATTATATCTCAATAAA-----CCTGCAAAAAA----------
-----AGTCTGTATTTTCTACTCTCAAAAAAAAAAAAAAAACAGAGAGAGAGAGAGAGAGAGAAAGGA------------
--AAAAAAAGTCAAT---AAAAAAGGAGTAAAA---TTCCAGAGAAAATAATTT---AGTCTTAGAAAATGGTT
>Manis_javanica
AGAACTCAAGGATACACAGAGGTGAGATA---------------TCATCAG---AAGACTATCA-CCAAT----------
-GTATCAACAAAAA-----------------GA-----GATAACAAGTG---------TTGGTGAGGATGTGGAGAAAAG
GCAATCCTTGTACATGATGGT-GGGAATGTAAATTGGTGCAGCCACTGTGGTAAACAGCAGGGAGGTTCC-TCAGAAACT
TAAAAGTAGAACTAC---ATGATCCAGCAATTCCTCTTCTGGGTACAGATCCAAAGGAAATGTGAACAGGGTCTCAAAGA
GATACCTGTTTTCCCATGATCATT-----C-CATTTCCAATAACCAAAACACGG----AAAAAATCTAAATATCAGTC-A
ATGGATGG-----TAGATAAAGAAGATGTGGTATA--------------AATACAC----------AATGG-AGTATCAT
TCAGCCATGAGAAAGAAGGAAATCTTTCCATTTGT---GACATTAGCTGACCTTGAGGGCACTGTGCTAA--AATGTAAG
TCAGACAAAGATAAATACTGA------ATGATATCACTTAGATGT-GG-ATCTTGAAAATTTGAACTCATAGAAACAGAA
AGTAGAATAGTGATT-CCAGGGACTGGGTAGGGGGAGGGAGGG-----GCATTGTGGAGATGTTGGTCAAAGAGTACAAA
CTT-CAGTTGT--------AACATGAATATGTTCTGGCA-ATCTAATGTACAGCATGGT-ATTATAGGTAACAATACTGT
ATTATATACTTCAATGTTGCTAAGACAGTAAATCTTAAATGTTCTC-----------------------------AACAC
--AAAAAAGAAAAGGTTAGTAATTATGTG---------------------------------------------------
-----------------ACCTGGC--------------------------------------------------------
---------------------------------AGAGGTGT----------------TA-CCAATGCTATGGTAGCAATC
AATTTACACTACACAGGTATATCAAATCAACACAGTGTACACCTTAAAC--ACACAATGT--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------TATATGCCAATGATATTTCAAGAAAAAAACACTGGGGAAAA----------
CTAAAAATGTCTATTTCTATACCTC-------------------------------------------------------
--CACAAA----------ATAAAAGGGGTAAAA---TTCTAGAGAAAATAATTTTTCTGCTCTGGGAAGTGAAA
>Sus_scrofa
TAAAACCAGGCATACAC-----TGTAATACTCAAAAAGCATGACTCATTTT---AGGAAAAGCC-AAAA-----------
-GTATCATCAAAAA--------------------ACAAGATAACAAGTG---------TTT-TAAGCATGTGGA-AAAAG
GGCGCCCTTGTGCACTATTG---TGAAAGTGAATTGGTGCAGCCACTGTGAAGAACAGCCTGGAGGTCTC-TCACAAAGT
TAATAGTAATACTACCATATGATCCAGCAATCCTACTTCTGCATATAGATCCAAAGGAAATGAAAACAGGATCTTGAAGA
GACATCTGATTGCCCATGCTTATTGCTGCATTCTTCACAATAGCCAAGATACG----TAAATAACCTACGTGTC-----A
GTGGATAG----------AAGAATGATGTGCTGTA--------------CATCGGC----------AATGG-AATATTAT
TCAGCCAAGAGAAAGAAGGAAATCCTGCCATTTTC---AACAGAGATGGACCTTGAGGGAACTGTGCT-----AAATAAG
TCAGACAGA---AAAGACAAACACTGTATGATATCACTCATAGGT-GGAATCTGGAAAAGTGGAATTCACAGAAATAGAG
GAAAGAATGATGGTTGCCAGGGGCT-------GGAGTCAGGGG------AAAT-GGGAGATATTGGTTAGAGGTTATAAA
CATCCAGTTATAAGACAAATAGATGAATAAATTCTGGGGAATCTAACATACAGCATGGTGATTATAGCTAAGAACACTGC
ACCATATACCTGAACGTTGTTAAGGGA-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------CATAAGGGTATCAGTTCAACACAATTCGCACCTTATACTTACACAATGT--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------CACAGGTCAATCAGATCTCAATAAA-----CCTGGGAAAA---------TT
TTAAATGTTCTTATTTTCTACCTCCAAGAAAAAAGAGAGGAGAGGGGAGGAAAAGAAAGGGAAAGAAAAGGGGAAAGAG-
--AAAGAAAACCAA----AAAAAGAGAGTAATA---TTCCACAGAAAATTATTT---ACTCTTGGGCTGTGGTT
>Bos_taurus
AAAACTCAGGGCTATACAGTGGTGAGATACTCAAAAAGCATG-----TTTT---AAGAAAAGTC-AAAT-----------
-GTACCATGGGAAAAAAAAAATCAAAGTATCAAAAAAAGATAACAAGTG---------CTCACAAGCAAGTGGAGGAAAG
GGAATCCTTGTGCACTGCTGATGGGAATGTAAACTGGTGCAGCCACTATGGAAAACAGCATGGAGGTTTCTTGAAAAAAT
TAAAAACAGAACTAAAATATGACCTAGCGATTTCCCTTCTGGGTTTAGATCCAAAGGAAATAAAAACAGGATCTAAAACA
GCTGTCTTCTCTCCAATGTTCACTGCAGCATTATTTACAA---------TGTA----GAAATGATCCAAGTGCC-----A
ATGGATAG----AAGGATAAAGA---TGTGGTATATAAATAGATATACGTATATATGTATATATACAATGA-AATATTAT
TCCGCCAGGAAAAATAAGGAAATCCTGTCACTT--AACAACATGGGTGAAC-----------TGTGCTAAGTG-------
--AGACAGAA--AAAGACAAATACTGTACGATATCACTTATGTGTGGGGACCCGGAAAAGCCAAGTTCAGAGAAAC--AG
AGCAGAATGGTGGTTGCCAGAGGCT-------AGAGGTAGGAA------AAATGGGGAGATGCTGGTGAAAGGATATAAA
CTTCCAGTTAT--------AAGATGAATGAGTTTTGGGG-GTTTAATATACAACACAGTGATTATAGTTGATTATACTTT
ATTATATACTAGAAAGT---TAGGAGAGTAGATCTTAAATACTACCATGGTAATCATCTTGCAGTATGTAGCTGTATCAA
ATCAACACAAG-----GCACACCTGTGTGCATGAGTGCTCAGTTGTGTCTATCTCTTTGGGACCCCATGGACCGTAGCCC
ACCAGGCTCCTCTGTCCATGGGATTTCCCAGACAAGAATACTGAAGTGGGTTGCCATTCCCTTCTTCAGGGGATCTTTCT
GACCCAGGAACTGAACCCGTGTCTACTGCATTGGCAGGTGTATTCTTTACCACCGAGCCACCTGGGAAATCCTTGTAATC
ATTTTGCAATATGTAATTGTATCAAATCAACACAATGTACACCTTAAAATTATGTAATGTCATATGTCAATTACTGGAGA
AGGCAACGGCAATCCACGCCAGTACTCTTGCCTGGAAAATTCCATGGACGGAGGAGCCTGGTAGGCTATAGTCCATAGGG
TCGCTAAGAGTCGGACACGACTGAGTGACTTCACTTTCACTTTTCACTTTCATGCATTGCAGAAGGAAATGGCAACCCAC
TCCAGTGTTCTTGCCTGGAGAATCCCAGGGACAGGGGAGCCTGGTGGGCTGCCATCTATGGGGTCGCACAGAGTCGGACA
CGACTGAATTGACTTAGCAGCAGCAGCAGCATATGTCAATTATATTTCAATAAA-----CTAGGGAAAAA--------TT
TTAAATGTTCTTATTTTCTACTCAGAAAAGGAA-----------------------------------------------
--AGGAGAAGTGAAA---AGAGAAAGGGAAAGAAAATTCCAGAGAAAATTATTT---AGTCTTAGACCATGGTT
>Equus_caballus
AAAAATCAGGAACACACAGAGGTGAGATACCCAAAAAGTATAACTCATTTT---CAGAAAACCC-AAAC-----------
-GCATCATCAAAAA-----------------GACAAGAGAG---AAATG---------CCGGCGAGCGTGTGGAGAAAAG
GGAAGACTTGTACACTGCCGGTGGGAATGTAAATTGGTGCGGCCATTATGGAAAACAGTATGGAGGTTTC-TCAAAAAAT
TAAAAATGGAACTGCCCTATGATCCAGTAATCCCACTTCTGCGCATAGATCCAAGGGAAATGAAATCAGGATCTCGAAGA
GACATCTGCTCTCCTACATTCATTACAGCCTTAAACACAATAGCCAAGATATG----GAAACGACCAAAGAGTCCATCTA
ACGGAGGG----ATGGAAAAAGA---TGTGGTGTA--------------CATATGTAC--------AATGG-AATATTAT
TCATCCATGAGAAAGAAGGAATGCCTGCCATTTGCTACAACAAGGATGGACCTTCAGGGCCTTGTGCTAAGTGAAATAAT
TCAGAGAGAG--AAAGACAAGTACTCCCTGATCTCACCTATATAT-GGAACCTATAAAAGCTGAACTCAGAGAAACGGAG
AGTAGAGTGGTGGTTACCAGAGGAT-------GGGGTGGAGGGGGTTGGGAATGGGGAGATGCTGGTCAATG-GTACAAA
CTTCCAGTTAT--------AAGATTAACAAGTTCTGGGG-ATCTAATGAACAGCATGGTGACTATAGCTAATAATACTGT
ATTATATACTTGAAAGTTGATAAGAGACCAGATCTTAAATGTTCTC-----------------------------ACCAC
A-AAAAAGAAA-----TGGCCATTATGTG---------------------------------------------------
-----------------TTGGGAT--------------------------------------------------------
---------------------------------GGAGGCGC----------------CAGCCAGAGCTATGGTGGCAATC
CTTTTGCAACATGTAAGTGTATCAAATCAACTCAATGGACATCTTAAACTTACACAACGC--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------TATATGTCAATTATATCTCAATAGA-----CCTGAGAAAAAA-------AT
TAGAATGTCTTTATTTTTTACTCTCAAAAAAAGAAA--------------------------------------------
--AGCAAAAGACAA----AAGAAGGGGGTAAAA---TTCAGGAGAAAATAATTT---AGTCTTGGGCAATGGTT
>Ceratotherium_simum
AAAAATCAGGGATATACAGAGGTGAGATACCCAAAAAACATGACTCATTTT---AAGAAAAGCC-AAAA-----------
-GTATCATCAAAAA-----------------GACAAGAGAT---AAATG---------CTGGCGAGCGTGTGGAGAACGG
GGAAGCCTTGTACACTGTTGGTGGGAATGTAAACTGGTACAGCCACTATGGAAAACAGTACGGAGGTTCC-TCAAAAAAT
TAAAAATGGAACTACCATATGATCCAGCAATCCCACTTCTGAGCATAGATCCAAGGGAAATTAAATCAGGATCTCGAAGA
GAT---TGCTCTCCTATGTTCACTACAGCATGAAACACAATAGCCAAGATATG----GAAACAACCTAAGCGTCCATC-A
ACGGATGG----ATGGATAAAGAAGATGTGGTATA--------------TGTATGCAC--------AATGGAAATATTAT
TCATCCATGAGAAAGAAGGAATTCCTGCCATTTGTGACAACAAGGATGGACCTTGAGGGCATTTTGCTAAGTGAAATA--
--AGAGAGAG--AAAGACAAGTACTGTATGATCTCACTTATGTGT-GGAATTGAAAAAAGCTGAACTCAGAGAAAC----
-ATAGAGTGGTGGTTACCAGGTGCT-------GGAGGGAGAGGGTGCAGAAATGGGGAGATGTTGGGCAAAGGGTACAAA
CTCCCAGTTAT--------AAGATTAACAAGTTCTGGGG-ATTTAATGTACAGGATGGTGACTATAGTTAACAATACCGT
ATTATGTATTTGAAAGTTGCTAAGAGAGCAGATCTTAAATGTTCTC-----------------------------ACCAC
G-AAAAAGAAA-----TGGTAATTATGTG---------------------------------------------------
-----------------ACGGGAT--------------------------------------------------------
---------------------------------GGAGGTGT----------------CAGCTAGAGCTGTGGTGGTAATC
GCTTTGCAGTAC--------ATCAAATCAACACAATGTACACCTTAAACTTACACAATGT--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------TATATGTCAATTATATCTCAACAGA-----CTTGGGGAAAAA-------AC
TGAAATGTCTTTATTTTTTATCCTCACCAAAAAAAAAAAAAAAAAACAGAAA----------------------------
--AGAAAAAGCTAA----AAGAAGGAGGTAAAA---TTCAGGAGAAATTAACTT---AGTCTTGGGCAATGGTT
>Myotis_myotis
AGAAATCAGGAAGACAC--AGGTAAAATATCCAAAATGTATGACTCATTTT---AAGAAAAGCCACAAA-----------
-GTATCACTGAAAA-----------------GACGAGAGATAAATAGCAAAGGTTCCCTTTCCAAGAGTGTGGAGGAAAG
GGAATCCTTGTGCATTGTTAGTGGAAATGTAAACTGGTGCAGCCACTATGGAAAACAGTATGGAGGTTCCTTCAAAAAAT
CAAAAGTAGAACTACCACATGATCCAGCAATTCCGCTTCTGGGTATAGATTAAAAGGAAATGAAAATAGGATCTCAAAGA
GATATCTGCACTCCCATGTTCATTGCAGCATTATTCACAATAGCCAAGATATG----GAAAAAGTTTAAGTGTCCGTC-A
GTGGATGG----ATGGATACAGA---TGTTTTACA--------------CACACACCT--------ACTGA-AATATTAT
TCAGCCCCAAGAAAGAAGGAAATCTTGTCATTTGCAACAACATGGATGGACCTCAAGGGCATTGTGTTAAGTGAAATAAG
TCAGACAGAG--AAAGCCAAATACTGTAAGATCTCACTTATATGA-GGAATTCAGAAAAGCTGAACTCAGATAG----AG
AGTGCAATGGTGACTGCCAAGGGCT-------GGCGGGTTGAG-----TAAATGGTGAGATGATGGTCAAAGGGTACATA
CTTCCAGTCAT-----------------AAGTTCTAGGA-ATCCAATGCATAACATGGTGATTATAGTTAGCAATATTGT
ATTATACGCTTGAAAACTGCCAAGAGAGTAAATCTTAAATGTTCTC-----------------------------AACAG
A-AAAAAGAAA-----TGGCAATTATGTG---------------------------------------------------
-----------------ACATGAT--------------------------------------------------------
---------------------------------GGAGGTGT----------------CAGCTAACACAATGGTAGTAATC
ACTTTGCAATATGTAAGGGTATCAAATCAACACAATTTGCACCTTAAAC--ACACAATGT--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------TACATATCAATTATATCTCAGTAAA-----CCTGGGGGGAGGGGAGCCGGT
TAAAATGTCTGTATTTTCTATACAAAAAAAAAAAAAAAAG----------------------------------------
--CAAGAAAGGCCA----AAAGAAGAGGCAAAA---TTCCAGAGAAAATAATTT---AGTCTTGGGAAGTGGTT
>Rousettus_aegyptiacus
AAAACTCAGGAATACACGGAGGTGAGATATCCAAAAAGTATGACTCATTTT---AAGAAAAGCCTAAAA-----------
-GTATCATTGAAAA-----------------GACAAGTCATAGTAAGTG---------TTGGCAAGCGTGTGGAGAAAAG
AGCACCTTTGAGCACTGCTGATGGGAATGTAAATT-----AGCCACTATGGAAAACGGTATGGCATTTCCTTCAAAATAT
TATAAGTAGAACTACCATATGATCCAGCAATCCCACTTCTGGGTATAGATTCAAAAACAATGAAAACAGGATCTTGAAGA
GATATCTGTTCTCCCATGTTCACTGCAGCGTTATTCACAATAGCCGAGTTATG----AAAAAAATCTAAGTGTCCGTC-A
GTGGATCA----ATGTATGAAGA----GTGGTATA--------------CGCACATGCACACATACAATGA-AATATTAT
TCAGTCATGAGAAAGAAGGAAATTTTGCCATTTGCAACAACATGGATGGACGTCAAGGGCATTGTGCTAAGTGAAATAAG
TCAG----AG--TAAGACAAATACTCTATGATATCACTTACATGT-GGAATCTGGAAAAGCCAAACTCAGAGAG----AG
AGTAGAACAGTGGTTGCCAGGGGCT---------GGGATAGGG-----GAAATGGAGAGGTTCTGGTCAAAA--------
------------------------------------GGG-ATCTAATGTACAACATAGTGATTATAGTTAACGACGCTGT
ATTATATACTTAAAAGTCACT--GGGAATAAATCTGAAATGTTCCC-----------------------------AACAC
A-AAAAAGAAA-----TGGTAATTATGTG---------------------------------------------------
-----------------ATGTGAT--------------------------------------------------------
---------------------------------AGAGGTGT-------------------------------------TC
ATTTTGCAACATGTAAGTGTATTAAATCAATACAACTTGCACCTTAAAC--ACACAATGT--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------TCTATATCAGTTATACCTCAATAAC-----CCCAGAAAAAA----------
--AAATGTCATTGTTTTCTACCCTAAAATAAAAATA--------------------------------------------
--GAATAAAGCA------AAAAAAAGGGCAAAA---TTCTAGAGAAAATAATTT---AGTTTTAGGAAGCCGTT
>Condylura_cristata
AAAAACCTGGGCTACTCAGAGGTAAG-TGCCCAAAATGTATGACATGTTTT-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--AAAGAA-GCCAAA---AAGAATAGGGTCAAA---TTCCAGAGAAAATAACAA---A---TTTGACAGAGATT
>Sorex_araneus
GAAAATTAGGGATACACAGAAGTAAGTGACC-----T-CAAGACTCAT-TT-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--TAAGATAAC-TC----AAAGGAGGGGTAAAG---CACCACA-AAAACAATTC---TGTCTTGAGCAGTGGTT
>Homo_sapiens
AAAAATCAGGAGTATGCAAAAGTGAGACACCCAAAAT-TATGACTTC--TT-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--AAGAAAAGC-AA----AAATCAGGGGTAAAA---TTCCAGAGAAAATGGCTG---AGTCTTGGCCAGTGGTT



Dog423_LINE

>L1MB1_3END
--------------------------------------------------------------------------------
--------GTGGAAACAACCTAAATGTCCATCGACGGATGAATG------------------------GATAAAGAAAAT
GTGGTATAT-ACATACAATGGAATATTATTCAGCCTTA-AAAAAGA-AGGAAATCCTGCCATATGCGAC-----------
--AACATGGATGAACCTTGAGGACATT-ATGCTAAGTGAAATAAGCCAGTCACAGAAGGACAAATACTGCATGATTC---
-CACTTATATGAGGTATCTAAAATAGTCAAACTCATAGAAGCAGAGAGTAGAATGGTGGTTGCCAGGGGCT--------G
GGGGGAGGGGGAAATGGGGAGTTGCTGTTCAATGGGTATAAAGTTTCAGTTATGCAAGATGAATAAGTTCTAGAGATCTG
CTGTACAACATTGTGCCTATAGTTAACAATACTGTATT--GTACACTTA------AAAATTTGTTAAGAGGGTAGA----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------TCTCATGTTAAGTGTTCTT-----------------------------------
--------------------------------------------------ACCACAATAAAAA-----------------
--------------------------------------------------------------------------------
-
>Canis_familiaris
CTGAATAAAGTTCTAGCAAGTTCCTTTCACTTCCAGTCCCCATCCTGATTTTCCCCTTGCATAGTCAAAA---AGGCCAT
TTCAA-------------CCTAAATGTCCACAGA-GGATGGACA------------------------GATTAAGAAAAT
GTGGTAGAT-GCACACAGTGG---ATTATTCGGCCTTA-GAAAGGA-GGA-----CATCCATATGTGAC-----------
--AGCTCGGCTGAACCTTGAGTACATT-TCACTAAATGAAATAAGCCAATTACA-AAGGACGCATACTGCATGATAC---
-CACTTATCTGAGATCTGTGAAATAGCCAAAGACATAGAGGCAGAGGGTAGAATAGTGGTTGCAACAGGCT---------
GGGAAAGGGGAAAGTAGGGAGTTACTATTCAACTAGTATA-AGTTTTAGTTATGAAAGATGACGAAGCTCTAGAGACCCG
--------CATTGTGCCTGTGGTTAACAGTACTGTATC--ATACACTCT------AGAATTTGTTAAACGGGTAGA----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------TCTTATGTTAAGTGTTCCT-----------------------------------
--------------------------------------------------GCCAGAGTGAAAAGAAGTGGCGATGGTGGG
GAGGGAG---AGGCTACTTCAA---AGACCAACTTAA-TTTTTAGAAAGCCAGATATAAATAAATATTTCACTGT-CCAG
G
>Felis_catus
CTGAATAAAGCACTAGCAAACGCCTTTCACCTCCAGTCCCCATCCTGAATTTCTCCTTGCATAGT-----------CCAT
TTCAA-------------ACTGAATGTCCACTGATGGATGGATGGAGGGAGGGAGGGGTGGATAGACAGATAAAGACAAT
ATGGTACATAACACGCAATGGAATATTTTTCAGCCTTA-ATGAGGA-AGGACATGCTTCCATATGTGGC-----------
--AGGTTGGCCGAACTTTGAGGACATT-ACGCTAAGTGAAATAAGCCAACCACA-AAGGACAAATGCTTCATGATAC---
-TACTTATCTGAGATCTATAAAATAGCCAAACACACTGAAGCAGAGGGTAGAATGGTGGTCAC-----------------
-----AAGGGGAAAGTGGGAATTGCTATTCAG-TGGTATA-AGTTCTAGTTATGCAAGGTGACTAGGTTCTAGAG-CCTG
--------CATTGTGACGATAATTAAAAGTACTGTATT--ATACACTCT------AGAACTTGTTAAGAAGGTAGA----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------TCTTACATTAAGTGTTCTT-----------------------------------
--------------------------------------------------GCCACAGTAAAAAGAAGTGGGGGTGGGGA-
----------AGGCTGTTTCAA---AGACCAACTTAA-TTTCTAGGAAGCCAGAT----ATAGATAATTCATTGT-CCAA
G
>Manis_pentadactyla
CCGAGCAAAACAGAAATAAATTCCTTTCA----GAGTGTCCTTCCTGACTTTCTCCTTACATAATAAGAA---AGGCCAG
TTCAA-------------CCTAAATGTTCATTAATAGATGAATG------------------------GCTAAAGAAAAT
GTGACATAT-ACATAAAGTGGAATATTTTTCAGCCTT----AAAAA-ATGATATCCTTCCATATACGAC-----------
--AGTTTGGCTAAACCTTGTGTGCATT-ATACTAAGTGAAATAAGCCATTCACAGAAGGAAAAATACTGCATGATACAAA
ATTTGAATATGA----TATGAAATAGTCAAGCCCATAGAAGCAGAAAGTATAATGGTGGTTGCCAGGGGCTAGGGAAAGA
GGGAAAGAGGGAAATGGGGAGTTGCTATTCAGCTGGTAAACAGTTTCACTTATGCAAAATGATTAAGTTTTAGAGATCTG
--------CACTATACCTATAGTAAACAGGACTGCATT--GTATTCTCT------ACAGTTTGTTAAGAAGGTAGA----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------CCTCATGTTAAGTGTTCTT-----------------------------------
--------------------------------------------------AACACAATTAAAAAAAGATGAGAAAA----
----------AGGCCATTTCAA---GGACCAACTTGA-TTTTCAGGAAGCCA-AT----GTAAATATTTCATTGT-CCAA
G
>Sus_scrofa
CTGAATAAAATGCCAGCAAATTGCTTTTACCACCAGTCTCCATTCTGACTCTCTTCTTGCATGTTAAGAA---AGGCCAT
TTCAA-------------CCTAATTATCCATCAATGGATAAATG------------------------GATAAAG----T
GTGGTATTT-ACATACAATGGAATATTATTCAGACCTG-AAGAAGA-AGGCTATCCTTCCATATGTGAC-----------
--AG----------CCTTGATGATATTAATGCTACATGAAATAAGCCAGTCACAGAAAGACACATACTACAGGATAA---
CCACTAATATGAGGTCCATAAAATAGTCACCTACATAGAAACAGAGAGTAGAATGGAGCTTGCCA-GGGTT---------
----GGGAGGGGAATGGGAAAATGCTGTTCAACTGGGATAAAATTT--GTTATGCAAGAAGATTAAGTCCTGGAGACCTG
--------CATTGTGCCTACAGTTAATGATACTATACTTTATAC-TTTT------AAAATTTGTTGAGAAGGTAGA----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------TCTTACCTT--GTGTTCTT-----------------------------------
--------------------------------------------------ACCTCAATAAAAAAAATTAGAAATGG----
----------AGACTGATTTAA---GGACTAACTTAA-ATTTTAGGACGTTACAT----AAAAATATTGCATTGTCCCAG
G
>Bos_taurus
CTGAATAAAGCACCAGCAAATTCCTTCTACCTCTAGTTGGCATCCTGACTGTCTTCTTGCATGTTAAGAA---AGGCTAT
TTCAA-------------CATAAGTATCTATTGACGCATGAATG------------------------GATAAACAAAAT
GTGCTATAT-ACACGTGGTGGAATATTATATAGTCTTG-AAAAAGA-AGTCTGTCCTTGTTTCTATAAC-----------
--AACTTGGCTGAACCTTGAGGACATT-ATGCTGCATGAAATAAACCAAACACAGAGAGGCAAATACTGCAGGATAT---
-TGCTTATATGAGGTCCATAAAGTAGTCAAACACATATAAGCAGAGAGTAGAATGGTGGTTGCCAGAGGTC---------
-GGGGAAGGGGAAATGGGGAGATGCTATTTAATTGGTATTAAGGTT--GTTGTGCAAGAAGATTAACTCATAGAG-----
---------ATTGTGCCC----CTAATAATGCTGTATC--ATACACTTG------AAAATTTGGTAAGTAGATAGA----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------TCTCATGTT--GTGTTCTT-----------------------------------
--------------------------------------------------ACCACAGTTGAAAAATGGAGAGAAATGG--
----------GGGCTGTTTTAA-----ACCAACTTCATTTTTTAGAAGGTTGGAT----ATAAATATTTCATTGTCCCAG
G
>Equus_caballus
CTAAAGAAAGCAGCAGCAAATCCCTGTCACCACCAGTCCCCCTCCTGACTCTCTCC-TGCATGTGAAGAA---AAGCCAT
TTCAA-------------CCTAAAAGTCCATTGATGGATGAGTG------------------------GATAAAGAAAAT
GGGGTGTAT-ACATACAATGGAACATTATTCAGCCTTC-AAAAAGA-AGGATATCCTTCCATAGGGATC-----------
--AGCGTGGCTCAACCTCGAGGACGTT-ATGCTGAGTGAAACAAGCCAGTCACAGCAGGACAGATACTGCCTGATAC---
-CTCTTACGTGAGGTCTATAAAGTAGTCAAA--CATAGAAGCAGGGAGTGGAATAGTGGTTGCCT-GGGCC--------G
TGGGGAGAGGAAAATGGGGAGTTGCTTTTCAACTGGTATAAAGTTT--GTTACACAAGATGATTAAATTCTAGAGATCTG
--------CATTGTGCCTATCGTTAACAATACTGTAGGAAGTACGCTTT------AAAA-TTGTGAAGAAGGTAGG----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------TCTCATGTTAAATGTTCCC-----------------------------------
--------------------------------------------------AA-ACAATAAGAAAAACGTGTGTGGTGGAA
G---------AGGCTATTTAAA---GGACCAACTTAA-GTTTCAGGAAGCCACAT----GTAAATATTTCATTGT-CCAA
G
>Ceratotherium_simum
CT-AATAAAGCACCAGCAAATTCCTTTCACCACCAGTCCCCATCCTGACTTTCTGCTTGCATATTAAGAA---AAGCTGT
TTCAA-------------CCTAAA-ATCCATTGATGGACGAATG------------------------GATAAAGAAACT
GTGGTATAT-ACATACAATGGAATATTATTTGGCTTTC-AAAAAGA-AGGATATCCTTCCATATGAGAC-----------
--AGCATGGCTGAACATTGAGGACATT-ATGCTAAGTGAAATAAGCCAATCACAGCAGGACAGATACTGCATGATAC---
-CTCTTATGTGAGGTCTATAAAATAGTCAAA--CATAGAAGCAGAGAGTAGAATGGTGGCTGCCA-GGGCT--------G
TGGGGAGGGGAAAATGGGGAGTTGATTTTTAACTGGTATAAAGTTTCAGTTATGCAAGATGATTAAGTTCTAGAGATCTG
--------CATTGTCCCTATAGTTAACAATATTGTATG--CTACATTTT------AAAATTTGTTATGAAGATGGA----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------TCTCATGTTAAGTGTTCTT-----------------------------------
--------------------------------------------------ACCACAATAAGAAAAAATTGCTGGGGGGG-
----------AGGCTGTTTCAA---GGACCAACTTAA-GTTTCAGGAAACTGCGT----GTA-ATATTTCATTGT-CCAA
G
>Condylura_cristata
CTGAATAAAGG---------------------------------------------------------------------
--------------------TGAATAG--ATGAATGGATTAAAA------------------------AAAAAAAATAAC
ATGGTATAG-ACATAAAGTGGAATACTACTCAGCCTGA-AAAAAGA-AGCA----CTCCCACATGTGGT-----------
--AGCATGACTGAAACTTGAGGACATC-ATACTAAGTGAAATAAGCCAAACACAAGAGGACAAATGCTGCGTGCTGT---
-CATTCACTCAGGGCCTATTAAATCAGCAAACATAGTGAAGCAGA--GTAGAATAGTGGTTGCCAGGCACT---------
GGGAGAATGGGAGGTGGAAAATTACTAATCAACTGCTATGAAGTT--AGTTATGCAAGGTGATTAAGGTCTAG-GTTCTG
--------CATT--------TGTTAATA-------------------------------------AAATATATAGA----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------TCTCAC-----ATATTCTT-----------------------------------
--------------------------------------------------ACCACAGTAAAAAAGAAATGGGAAAGAAA-
----------ACACTGTCTTAA---GGACTAGCTTAA-ATTTTCAGAAGCCAGAT----GTAAAAATAGCATAGT-CCAA
G
>Sorex_araneus
CGGAATAAAGCTCCAGAAAATTCCCTTCACCCCAGTTACCATTCTTAACTTTCTTTTTGTGTGTTAAGG-----------
--------------------TAAAGCACCATTGATAGATGAGTA------------------------AATAAAGGAAAT
ATG-----T-ACATACAATGTATTATTACTCAGCCCTATGAAAGTATAGT-----CAGCTATAGGTGACTTGACTTGACT
TAACCTTGACTTAACCTTGAGGGTAGT-ATGCCGTGTAAAATAAGCCAATCAC---AGAATAGACAC-AAATGCTTC---
-CACTTATGAGAGATTTGTGAAATAGTCAAACACA--GAATTTAAAAGTTAAATGGGGGTTACTGGGAACT---------
GGGCCAG-GGTAGTAGAGAAATCACAATTTAACTGGCATC-GA-GACAGTTAAGCAAGTCGATT----TTGAGAGACTTG
------TTGCTGATGCCTAAAACGAACAGTACTGTACT--CTTAAGTATATATGAAGGGGGTCTTGAATGGATAGGGATA
GTGTACTTACCTTGTACACGGACTTGGGTTCTATTCTCAGCACCAAGTATAGTCTGTCAAGCCCCTCCAAGACTGATCCC
TTGAGTATAGAGCTAGAAGTAAGCCCTCAGCACCATGAGACCATGAGGTCTGCCCCAATTACACACACACACACACACAC
ACACACACACACACACACACACACCCATAAATAGAAATGAAGTGGTGTTTTATTTTTTTCAACCATTAAAAAAGAAGCCT
TTTCTACTCTGGAGAAGTCCATGTTCTCTCTCGATATGTATCTTTCTCATTCTTTTCCCCCACATCTCAAAATTTCTTTT
AATAAAACCTGTTTTTCTTCACAAAAAAAACTTAAATCAAATGAAAATTAAATTAAAATAAATAGAAATTGGTGGGGAAT
A---------ACACTATC-CAA---AGACTGACTCAA-GTTTTAGAAATCCAGAT----ATTATTATTTTATCAT-CCAT
G
>Myotis_myotis
CTCCCTAATGCCCCAGCAACTCCCTTTCACCACCATTCCCCATCTTGACTTTCTCTTTGCATTTTAAGAA----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------AGGCAATTTCAA---GGACCAGCCTAA-GTTTTAGGAAGCCAGGT----ATAAATATTCCATTGC-CCAA
G
>Rousettus_aegyptiacus
CTAAATAAAGCACTAGCAAATTCCTTTCACCACCAATCCCCATCCTTACTTTATCTTTGCGTACTAAGAA----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------AGGCAGTTTCAA---GGACCAGCTTAA-TTTTTAGGAAGCCAGAT----GTGAATATTTCATTGT-CCAA
G
>Homo_sapiens
CTTAATAAGGTGCCAGCAAAATCCTTGCACCAACATTCCCCATGCCGAACTTCCCCTTGCATATTAAGAA----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------AGAACATTTCAA---GAATCAGCTTAA-TTTGTAAGAATCTGGAT----GTAAATATTTTGTTGT-CCAA
G



Dog424_LINE

>L1_CARN7_3END
--------------------------------------------------------------------------------
-----------------TTGTATGGTGACAGATGGTAACTAGACTTATTGTGGTGATCACTTCACAATGTATACAAATGT
CGAATCACTATGTTGTACACCTGAAACTAATATA---ACATTGTATGTCAATT-ATACTCAAATAAAAAAA---------
--------------------------------------------------------------------------
>Canis_familiaris
AACCTGCTCTCAAGACCC-TATTGCCAGCTGCCTCTT-GGACTTCTCCCA---GAGGTCCCACATACACCTC---AAACT
TTGTAT--GTTCAG----------ATGATGGATGTGAACCAGACTTACTGTGGTGATCATTTTGCAATATACACAAATAC
CA----ATCATGATGTGCACCCGAAGCTA--ACA---ATATTGTGTGTTGATT-ATACCTCAACAGAAA-----------
---TATATGCATGTGTTTGG---TACTGGACTCATCACCCTCCCTCGAACCTCTAGCTCTTCCAGTTCAGTTCT
>Felis_catus
AACCTGCTCTCAAGACAC-TATATGCAGCTGCCTCTT-GCACTTATCCTACTGGATGTCCCACATACACCTC---AAACT
GAATAT--GTTCAG----------GTGATGGGTGTTAGCCAGACTAATTGTGGTGATCATTTTGCAGTATATACAAATAT
GA----ACCATGTTGTACACCTGAGATGA--------ACAGTATATATTGGTT-ATAACTCAATAAAAA-----------
---TATATACATGTGTTCAG---TACTGAGCTCATCACCTTCCCTCAAACTCCTATCTCTTCCAGTTCAGTTCT
>Manis_pentadactyla
ACCCTGCTCTCAAGACCCTTCTTCACAGCTGCCTCGT-GGACATCT---GCTGGAGGTCCTACATACAACTC---AAACT
CAGTAT--GTTCAG----------GTGACACATG-TAACTAGACTTACTGTGGTGGTCATTTTGCAAAATATACAAATAA
CAAACTGTTTTCATGTACACCTGAAACTA--ACA---GTGTTGTATGTCAATT-ATCCCTCAATAAAATTTGTTTTTA--
---AAAAACAATAT-TTCAG---GTCTGACTTCATTACTCTCCTTCAAACCTGTATCTCCTTCAGTCCAGATCT
>Sus_scrofa
AACCTGCTCTCAAACCCTCTATTTCC-GCTGCCTCTT-GGACCTCT---ACCAGAGGTCCCGCACACACCTC---ACACT
TGACGT--GTTCAG----------GGGACAGATGTTAACTAGACTTACTGGGGTCATCATTTCGTGCTGTACACAAATAC
TGAACCATGACATGGTA-ACCTGAAGCTAGTATATGTATGACATATACTAATT-ATACCTCAATTAAAAAAAAGAAGCCG
---CATCTGAACATGCTGGG---TACGGAGTCCAGCACCCTCCCTCAGGCGTCTATCTCCTCCTGCCCGCATCT
>Tursiops_truncatus
AACCTGCTCTCAAAACCCTTATGTCCAGCTGCCTCTT-GGACATCTCCTACTGGAGATCCTATATACATCTC---AAACT
GAATAT--GTTCAG----------GTGATACATGTTAACTAGGTTTACTGGGGTGGTCATTTCACAATATATACAAATAC
TGGATCATTATGTTGTA-ACCTGAAGCTAATATATGTATGATATATAATAATT-ATACCTCAATTAAAAAAAA-------
---AATCCTAATATGTTCAG---TACTGAGCTCATCGCCCTCCCTCAAACTCCTATCTCCCCCAGTCCGGATCT
>Equus_caballus
AATCTGCTCTCAAGATGCTTATTTCTTGCTGCCTCTT-GGATATCTCCAACTGCAGGTCCCATATACACCTC---A-ACT
TAATATATGTTCAG----------GTGACAGATGTTAACTAGACTCATTGTGGTGATCATTTCACAACATATACAAATAT
TGGATCATTATGTTGTACGCCTGAAACTA--ATAATAACATTCTATGTCAATT-ACACCTCAATAAAAAAT---------
---AAACTTCATATGTTCAG---TACTGAGCTCATCACCCTCCCTCAAACATCTGTCTCCTCCAGTCCAGACCT
>Ceratotherium_simum
AACCTGCTCTCAAGACCCTTATTTCCAGCTGCCTCTT-GGATATCTCCTACTGCAGGCCCCACAGATACCTC---A-ACT
TAATATACGTTTAG----------GTGACAGGTGTTAACTAGACTCGCTGTGGTCAGCACTTCACAATATATACAAA---
----------TGTTGTACACCTGAAACTAATATA---ACATTATACATCAATT-ATACCTCAGTAAAAAATAA-----AC
---CAACTTCTTATGTTCAG---TACTGAGCTCACCAC-CTCCCTCAAACATCTATGTCCTCCAGTCCAGGCCT
>Myotis_myotis
AACCTGCTCTCAAGACACTTAATTCCAGCTGCCTCTT-GAAATTCT----GTGGAGGTTCCACATACA---------ACT
TAATAT--GTTCAA----------GTGACCGATATTAACAAGACTCATTGTGGTGATCATTTTGCAGTATATACAAATAT
TGAATCATCATGTTGTACGCCTTAAACTA--ACA---ATGTTATTTGTCAATT-ACACCTCAATTAAAAAAAA----TAA
---AAACTTAGTACGTTCAG---TACTGAGCACATCACCCTCCCTCAAACTTACATCTCCTCCAGTCCAGATGT
>Rousettus_aegyptiacus
AACTTGCTCTCAAGACTGTTAATTCCAACAGCCTCTT-GGACATCTCCTGCTGGAGGTCCCACATATATCTC---AAACT
TAATAT--ATTCAG----------ATGACAG--GTTAACTAGACTTAC------GATCATTTTTCAATATATATAAATAT
CAAATTAT--TGTTGTACACTTCAAATAA-----------TGTTATGTCAATTAATACCTCAGTTTAAAAAAA--CTAAA
---AAACTTGATATGTTCAG---TACTACGCTCATCACCCTTCCTGAAACTTAAATCTCCTC--GTCTGGATCT
>Condylura_cristata
AACCTGCTCTCAAGATCCTTATTTCCAGTTGCCTCTTCAGACATCTTCTCCTGGAGGTTCCACATATATCTC--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---AAATTTAACATGTATGA---CACTGAAAGCATCA--CTCGCTCCAACTTTTATTTCCAC-AGTCCA-ATCT
>Erinaceus_europaeus
AACTT--------------TATTTCCAGATGCCTCGA-TGACATCTACT----GACATTGCACATACATTTC--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---AAACATAACATGCA--A---TACCAGGTTTATCA--CTCTCTCAAACTCACATCTCCAC-AGTCCAAATCC
>Homo_sapiens
AAACTGGTC---------------------GCCTTTT-GGACATCTCCTACTGGAGGCCCCAAGGA-ACCTC--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---AAACTTA----GCTCAG---TACTGAACTCATGGCCCTCTCTCAAACAT-TATCTTCTCCAGTCCAGATTT



Dog426_LINE

>L1_CARN7_3END
------------------------------------------------------------------------------AC
AATGTATACAAATGTCGAATCACTATGTTGTACACCTGAAACTAATATAACATTGTATGTCAATTATA-CTCAAATAAAA
AAA-----------------------------------------------------------------------------
--------
>Canis_familiaris
GGAGGATAATTAGCGATTCCACATTTCATTTTGAAA---AGAGTTGCTTTTCAA---AATAA------------------
------AACAAAATACAAATCATTAAGTTGTACACCTGAAACTA------TGTTACATGTCATTTATATCTC--------
------AAT-------AAAAAAAAA-----------GGAGAACAGGGTCAAAGTTCATGAAAGATTATATTTGTGACC--
-ATATTTC
>Felis_catus
GGAAGATAATTAGCCATTTTACATTTCCCT----AC---AGTGTCACTTTTCGA---AATAAAAGGAAC---AGA-----
------CACAAATACTGAATTATTAAGTTGTACGCCT-------ATATGATGTTCTATGTCAATTATAACTC--------
------AAT-------AAAAAAAGGAAAA-------GGAGAAGAGGGTCAAATTTAATGAAAGATTATATTTGTGACTAC
AACATTTC
>Manis_pentadactyla
GGGAGATCATTTGCCATTCCACATTCTCT-----AC---AGTGTTGGCTTTCAA---AATAAAAGGAAG---GAA-----
------TACAAATATCAAATCATTAAATTGTACACCTGAACCTAATACAATGTTATATGTCAATTATGTTTC--------
------AAT-------AAAAAGAGGAAAGAAA---TAGAA-----AGTCAAAGTTCATGAAAGATTA-ATTTGTGAACAT
GAAATTAC
>Sus_scrofa
GGAGATCATTTAGCCATTCCCCATTCTTT-----AT---AGTGTTACCCTTCAA--------------------------
-----------ATATCAAATCGTTATGTTGTACACCTGAAACTAACATAATAT--TATGTCAATTATATTAC--------
------AGTTTAAAAAAAAAAAAAAAAAGAAG---TGGAGAAGAGGGTTAAATTCCATGAAAGGTTA-ATTTGTAACCAC
AACATTTC
>Tursiops_truncatus
GGGAGATAATTAGCCATTCCACATTCTCT-----AT---AGTGTTGCCTTTCAA---CAAAA-GGGAAA---GAA-----
------TACAAATATCAAATCAT--------GCATTTGAAACTAACATAATATTTTATGTCAATTATATCTC--------
------AAT-----TTTAAAAAAGGAAAGAAG---TAGAG------GTCAAATTTTATGAAAGATTA-ATTTGTG-----
-ACATTTC
>Equus_caballus
GGGAGATAATTAGCCACTCCACATTCCCT-----AC---GGTGTTGCCTTTCAA---AATAA----AAA---GAA-----
------TACATACATCAAATCATTATGTTGTACATCTGAAACTAATATAGTGTTATATGTCAATTATATTTC--------
------AAT-------ACAAAAAGTAAGGAAG---TGGAGAAGAGGGTCAAATTTCATAAAAT-----ATTTGTGACCAC
AACATTTC
>Ceratotherium_simum
GGGAGATAATTAGCCATTCCACATTCCCT-----AT---GGTGTTGCCTTGCAA---AATAA----AAA---GAA-----
------TACATATATCGAATCATTATGTTGTATACCTGAAACTAATATAGTGCTATATGTCAATTATATATC--------
------AAT-------AAAAAAAGGAAAGAAG---TGGAGAAGAGGGTCAAATTTCATGAAAGCTTA-ATTTGTGACCAC
GACACTTC
>Myotis_myotis
AGGCAGTAACTAATCATTCCACATTCCCT-----AT---AGTATTGCCTTTTAA---AA-AG------------------
------TACAAATGTCAAGTCATTATGGTGTATATCTGAAACTAACATAGTGTAGTATGTCAATTTTA------------
----------------AAAAAAGGATAAGAAG---TGGAC----GAGTCAAATTCCGTGAAAGATTA-ACTTGTGATC--
-ACATTTC
>Rousettus_aegyptiacus
GGGAGATAATTAGCCATTCCACGTTCCCT-----AT---GGTGCTGACTTTCAA---ATTAG---AAAA---AGA-----
------------------------------------------GAGTCCCTCATTATGTGTCAATTACGTCTC--------
------AATTTTT---AAAAAAGGAAAAAAAG---TGGAG--AAGAGTCAAATTTCATGAAAGATTA-ACTTGTGACC--
-ACATTTC
>Condylura_cristata
AGGAG-TAGATAACCATTCCACCTTCCCT-----AC---AGTGTTACCTTTCAA---GAGACAAGAAAG---GAA-----
--------------------------------------------------------------------------------
-----------------------------------TGGAAAAGAGTGATACATTTCCTGAAAGATTA-ATTTGTAACCAT
GATATTTC
>Sorex_araneus
GGGAGATAACCAGCTATTTCACATTCCCC-----ATGCAGGTACTGCCTTTCAA---AACAAAACAACAAAGCAG-----
--------------------------------------------------------------------------------
-----------------------------------TGGCAAAAAGGGACATATTTCCTGAAAGATT--AACTGTGACTGT
GACATTTC
>Homo_sapiens
GGGATATAATTAAACATTTCATATTTTCT-----AT---AGTGTTGTCTTTCAA---AATAA-----------AG-----
--------------------------------------------------------------------------------
-----------------------------------GGGAGAAAAGGGCCAAATTCC-TAAAAGATTA-ATTTGTGACCAT
GACATTTC



Dog427_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------TTTTTCCAGCTTTATTGAG
GTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGAT----ATACGTATACATTGTGAAA
TGATTACCACAATCAAGCTAAT-----TAACATATCCATCACCTCACATAGTTACCAT-TTTTTTGTGTGTGGTGAGAAC
ACTTAAGATCTACTCTCTTAGCAAATTTCAAGTATACAATACAGTATTATT-AACTATAGTCACCATGCTGTACATTAGA
TCTCCAGAACTTATTCATCCTGCATAACTGAAACTTTGTACCCTTTGACCAACATCTC-CCCATTTCCCCCACCC-----
-------CCCAGCCCCTGGCAACCACCATTCTACTCTCTGCTTCTATGAGTTTG----------ACTTTTTTAGATTCCA
CATATAAGTGAGATCATGCAGTATTTGTCTTTC-TGTGCCTGGCTTATTTCACTTAGCATAATGTCCTCCAGGTTCATCC
ATGTTGTCACAAATGGCAGGATTTCC---TTCTTTTTTAAGGCTGA--ATAATATTCCATTGTGTATATATAC--CACAT
TTTCTTTATCCA-TTCATCCGTCGATGGACACTTAGGTTGNTTCCATATCTTGGCTATTGTGAATAATGCTGCAATGAAC
A-----TGGGAGTGCAGATATCTC-TTCGAGATACTGATT--TCATTTCCTTTGGATATATACCCAGAAGTGGGATT---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------
>Canis_familiaris
TTTAA---ACCAGAGTATTCCT----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------GAGGATATAAAATAGAAAGTATCTAA----TTATA---TATGAATTAGG-TTTTTTT-
--------TCCTTGTTGTGTGCCAAG-TCCTACCTCAATTTGT-----------CATCCCCACCCCCCAGTTGTATTGAG
ATATAATTGACATAG-AACATGGTAGTAGTTTAAGGAGTACAGTATAAAGATTTGGT----ATATGTATATACTGGGAAA
TGACTACCACACTAAGTCTAGT-----TAAC--ATCCATCACCTAACATAGTTACAAA-TTTTTTTCTTGTGATGAGAAT
TTTAAAAATCTA----TTTAGCAGCTTCC-AATATCTAATACGGTATTGTT-AAGTACAGTCACCAAGCTGTATATTATA
TCGTCAGAACATTTTAATCTT--GTAACTGAAAGTTTGTACCTTTTAACCAT--CTTCACCCATTTCCCCCAGCCCCAGA
-------TTCCTACTCTGGCAACCACTTACCCAT--CCTGTTTCCGTGAGCTCATTTTTTTTTTTTTTTTTTAGATTCCA
CATATAAGTAAGGTCATACAGTATTTGTCTTTT-TCTGTCTG----ATTTCACTTAGCACAGTGCCCTTAAAGTCCATTT
ATGTTGTTGCAAGTGGCAGGATTTCC-----TTTTATTATGACCAA----ACTATTCCTCT-TATATATATAG--CACAT
CTTCTTTATCCA-TTTATCCACTGATGGAC--TTAGGTTGTGTTCATGTCTTGGCTAGCGTAAATAATGCTGCAGTAAGA
ACGGGGTGGGGGGGCAAATATCTC-TTTAAGGTCATGATC--TCATTTCCTTTAGTCAAATGC-----------------
CATG-----------------------------------------------------CCATAGTTCTTA-----AATCCC
TTTCATTAGAGTCATAATTTCTAGG-------------------------------------------------------
--------------------------------------------------------------------------------
-----------------AGTAGTCATATGGTGAACTTGGTACAAGCATGGAATTTAGAA-TCAGATC
>Felis_catus
TTTAA---ACTAGAATATTCCT----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------AAGGACATAAAATAGAAAGTATCTACCCTGTTATA---AATTAATTATG-ATTTTTA-
--------TCCTTGTTCTCTGTTAAATTCATATCTCAATTTG-------------CTACCCCACCAGCCGTTGCATTGAG
ATATAACTGACATAC-AACACTGTATTAGTTTAAAGAGTACAACATAATGGTTTGGT----ATATGTATATATTGTGAAA
TGATTGCCACAGTAAGTCTAGC-----TAAC--ATCTGTTGCCTAACATAGTCCCCAC-TTTTTTTCTTGTGATGAGAAC
TTTTAAGATCTACTCTCTTAGCAGCTTTC-AATATATAGCAAAGTATTATT-------AGTCACCATGGTGTGTATTACA
ACATCAGAACATATTAATCTT--AAAACTAAAAGTTTGTAGCTTTTGACCAC--CTTCACCCATTTCCCTCAGCCCAAGC
C------CCCTGCCTCTGGTAACTGCCAATCTGT--TCTGTTTCTATGAGCTCA----------ATTTTTTTAGATTCCA
CATATAAG----ATCATTCAGTATTTGACTTTC-TCTG--------ATTTCACTTAGTACAATGCCTTCAAAGTCCAATC
ATGCTGTTGCAAGTGGAAGGATTTCCTTTTTTTTTTTTATGACTGA----AAGATTCTATT-TATGTATATGC--CACAT
CTTCATCATCCTCTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----------------
NNNN-----------------------------------------------------NNNNNNNNNNNN-----NNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNN-------------------------------------------------------
--------------------------------------------------------------------------------
-----------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>Sus_scrofa
TTTAA---ACCAGAATCTTCCT----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------AAGGACAGGAAATAGAAAGTATCTAGCCAGGTATA---TAAAAATTTGT-TCTTTTT-
--AAAAAAATCTTGTTCTCTGCCAAG-TCATACCTCAATTTGTGCTG-------TCCCCTTTCCCCCTAGTTTAATGTAG
ATGTAATTGACATAT-AACATGGTATTAGTTTAAGGCACACCACATAATGGCTTGAT----ATATGCATATAGTGTGAAA
TGATGACCACAGTAAGTTTAACAGCTATAAC--ATCCATTACCTCGCATAGTTACAA--TTTTTTTCTTATGATGAGAAC
TTTTCAGATCTACTCTCTTAGCAAGTTTC-AATACACAATACAGTATTGGT-AACTACAGTCATGATGCTGT--ATCACA
TACTCAGAGTTTATTGATCTT--AGAACCAAAAGTTC-TACTTTTTGACCACATTTTTACCCATTTCTCTCACTCCTATA
CCCACCACCCTGCCCTTGGCAACCACCAATCTCTTCTCTCTTTCCAAGTGTTCG---------ATTATTTTTAGATTTTA
CATATAAGTGATATCAAACAGCATTTGCCTTTCTTTTGTCT-----ATTTCACTTAGCATAATGCCCTCAAGATCCATCT
ATATTGCTACAAATAGCAAGTTTTC----TTTCTTTTTATGACGAA---TAATGTTTCATTGTATATATATGC--CACAT
TTTCTTGATCCATTTTATCCATTGATGGACATTTAGGTTGTTTTCATGTTTTGGCTATTGTAAATAATGTTGCAATGAAC
A-----TGGGGGTGTAGATACCTC-TTCAATACAGTGATT--TAATTTGCTTTGAATTCAGAC-----------------
TACA-----------------------------------------------------CATTAGTTATA------AATTCC
TTCAATCAGAGTCATACTTTC-----------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------TGGAA-TCATATC
>Tursiops_truncatus
TTTAA---ACCAGAATATTCCT----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------AAGGACATAAAATAGAAAGAATTTAACAAGTTATA---TCTGTATTACT-TCTTTTT-
--AT--TTTCCTTGTCCTTTGCCAAG-TCATACCTCAATTTGTTTT--------TCCCCTCCCCCATCAGTTTTATCGAG
ATGTAATTGACATAT-AACATGGTAATAGTTTAAGGCGTATAACATAATGATTTGAT----ATATGTATATACTGCAAAA
TGATTACCACAATAAGTTTAGT-----TAAC--ATCCATC-CCACGCATAGTTGCAAT-TTTTTTCCTTGCGATGAGAAC
TTC--AGATCTACTCTCTTAGCAACTTTCAAATATACAATACAGTATAGTT-AACTGTAGTCATAATGCTGTACATTACA
TCTTCAGAACTTAC---TCTT--ATAACTGAACGTTT-TACCTTTTGACCAC--CTTTACCCAACTCTTCCACCCC-ACC
CTCACTGCCTTGCCCTTGGCAACCACCAACCTGTTCTCTATTTCTATGAGTTCA---------ATTATTTTTAGATTCCA
CATATAAGTGACATCATACAGTATTTATATTTC-TCTGTCTGACG-AATTCACTTATCATAATGCCCTCAAGGCCCATCT
ATGTTGTTGCAAATAGCAGGATTTCTTTCTTTCTTTTTATGGCCAA--GTAATATTTCATT--ATATATATGC--CACAT
TTTCTTTATTCA-TTCATCCATTGATGGACATTTAGGTTGTTTCCATGTTTTGGCTATTGTATATAATGCTGCAATGAAC
A-----TGGGGGTGTAGATATCTT-TTCAGTATAGTGGTT--TAGTTTCTTTTGGATATAGAC-----------------
TATG-----------------------------------------------------CATTAGTTCTTA-----AATTCC
TTC-ATCAGAGTCATATTTTCTAGG-------------------------------------------------------
--------------------------------------------------------------------------------
-----------------AGCATTCGTACAGAGTACCTGTTAAAAGTGTGGAATTTAGAA-TCAGATC
>Equus_caballus
ATGAA---ACCAGAATATTCCT----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------GAGGATGTAACACGGAAAGTATCTAACCAGTTATA---TATGCATTAGT-TCTTTTT-
--TC--TCTTCTTGTTCTCGACCAAG-TCAAACATCAGTTTGTGTTTTTGTTTTCTGTCCCCGCCCCTAGTTTTACTGAG
ATATAATTGACATAT-AACATTGTGTTAGTTTCAGGTGCACAACATAATGATTTGAT----ATATGTATATATTGTGAAA
TGATCACCACAATAAGTTTAAT-----TAAT--GAGCATC-----ACATCGTTACAAAGGTTTTCTCTTGTGATGAGAAC
TTTCAAGATCTACTCACTTAGCAACTTTCAAATATACAATATAGTATTGCT-CACTATAGTCACCATGCTGTGCATTACA
TCCTCATGACTTATTAATCTT--ATAACTGAAAGTTTTCAGCTTTTGACCAC--CTTCACCCATTTCCCTCACTCCCATC
CCACCC-CTCTGTCTCTGGAAACCACCAATCTACTCTCTGTTTCTATGGGTTCA---------ATTTTTTTTACATTCCA
CCTGTAAGTGAGATCACACCACATTTGTCTTTC-TCTGCCTGAC--ATTTCACTTAGCATAAT-CCCTCAAGGTCCATCT
ATGTTGTCACAAATGGCAAGATTTCC---TTCTTTTTTATGGATGAG-AAAATATTCCATTGTGTATACATGTGCCACAT
TTT----ATCTG-TTAACTCATCAATGGACACTTAGGCTGTTTCCATGTCTTAGCTATTGTAAATAATGCTGCAATGAAC
A-----TGGGGGTGCAGATATCC--TTCAATATCGTGATT--TTGTTTCCTTCTAATAAATGC-----------------
TATG-----------------------------------------------------CATTAGTATGCATT---AATTCC
TCCTATGAGAGTCATAACTTCTACG-------------------------------------------------------
--------------------------------------------------------------------------------
-----------------AGCAGTCATATTGTGTACCTGTTAAAAGCATGGAATTTGGAG-TCAGATC
>Ceratotherium_simum
ATTAA---ACCAGAATATTCCT----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------AAGGACATAACATAGAAAGTATCTAACCAGTAGTA---TATGCATTAGT-TCTTTTT-
--TC--TTTTCTTGTTCTCTGCCAAG-GTATACCTCAATTTGTGTTTTTTTCCATTCCTGCCCCCCCAAGTTTTATTGAG
ATATAATTGACATAT-GACATTGTATTAATTTCAAGTGTACAGCATAATGATTTGAT----ATATGTATATATTGTGAAA
TGATTACCACAATAAGTTTAAT-----TAAC--ATTCATC-----ACATTGTTACAACTTCTTTTTCTTGTGATGAGAAC
TTTTAAGATCTACCCTCTTAGTAAC-TTCAGATATACAATACAGTATTGCTAAACTATAGTCACCATGCCGTACATTACA
TCCTCATGAGTTATTAGTCTT--ATAACTGAAAATTTGTACCTTTTGACCCC--CTTCACCCGTTTCCCTCACTCCCATC
CCCACC-CCCTGCCTCTGGCAGTCACCAATCTACTCTCTGTTCCTATGAGTTTA---------ATTTTTTTTAGATTCCA
CATATAAGGGAGATCATACAGCATTTGTCTTTC-TCTGCCTGACTTATTTCACTTAGCATAATGCCCTCAAGGTCCGTCT
ATGTTGTCACAAATGGCAGGATTTCC---TTCTTTTTTGTGGATAAATAAAATATTCCATTGTATGTATATAC--CACAT
TTTCTTTATCCA-TTCATTCATCGATGGACACTTAGGTTGTTTCTATGTCTTGGCTATTGTAAATAATTCTGCAATGAAC
A-----AGGGGGTGCAGATATCTC-TTCAATAGAGTGACT--TTGTTTCCTTCTAATATATAC-----------------
TATG-----------------------------------------------------TACTAGTATGCATT---AATTCC
TTCTATCAGAGTCATAATTTCTAGG-------------------------------------------------------
--------------------------------------------------------------------------------
-----------------AGAAGTCATATAATTTATCTATTAAAAGCATGGAATTTGGAA-TCAGATC
>Myotis_myotis
TTTAATATTTCAGAATGTTCCT----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------AAGGACATAAAAAAGAAAGTATCTAACCAGTTATA---TGTGCA--------------
-----------TTGTTCTCTGCCAAG-TCATACCTCAATTTGTG--------------CCCCACTCCCAGTTTTATTGAG
ATGTAATTGATGTAT-AACAATCCATTAGTGTAGGGCACATGGCAT---GATTTGAT----GTATATACA---AGCGGAA
TAATTGCCACAGTAAATTTAGT-----GCAC--ATCCATCACCTCACATAGTTACAA---TTTTTTCTTGTGATGAGATC
TTTTAACATTTACTCCCTTGGCAACACTCAAATATGAAATACAATATT----AACTACGGTCACCATGC-ATACATTACA
TTCTCAGAACTTATTAATCTT--ATAACTGAAAGTTTCTACCTTTTGTTCAC--CTTCACCTATTTTCCTAATCTCTGTC
-------CCCTGCCTCTAA-AACTGCCAATCTGTTCTCTGTTTCTATGATTTCA----------ATATTTTTAGAGTCCC
CATATAAGTGAGATCATGCAATATTTATTTTTT-TCTGCCTGCCTTACTTCACTTAGCATAATGCCCTCAAGATCCATAC
A---TGTCACAAATAGCAGGATTTTC---TTCTTTTTTATGGCTAAATAAAATATTCCATTGCAT-TATATGC--CACAA
GTTCTTTATCCA-TTCATTCATCAGTGGACACTTAGGTAGTTCCCATGTCTTGGCTATTGTAAATAATGTTGCCATGAAC
A-----TGGGGCTGCAAATATCTCTTTTGATGTAGTGTATAACCATTTCATTTGGATATACAT-----------------
TATGCATTAGTTCTATTTATTATTAAGTTTTTGGGGTGACATTGGTTAATAACATTGCATTAGTTCTTA-----AAGTCT
TTCTACCAGAGTCATAATTTCTAGA-------------------------------------------------------
--------------------------------------------------------------------------------
------------------GCAGCCATACAGTATGCCTGTTAAAAGCATGGAATTTAGAA-TCACATC
>Rousettus_aegyptiacus
ATTTA---AACAGACTATTCTT----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------AAGGACCTAAAATAGAAATTATCTAACCAGTGATA---TATGCA--------------
-----------TTGTTTTCTGTCATG-TCATA--TCAATTTGTGTAA-----------CCCCACCCCAAGTTTTACTGAG
ATGTAATTGGCATTT-AACGTT-CATTAGTTTAAAGTGTACATGATTATATATAAATATAAATATATATATATATCAAAA
TAATTACCATAGTAAGTCTAGT-----TACC--ATTCATCACCTCACATAGTTATAA---TTTTTTCTTCTGGGGAAAAC
TTTTAACATCAACTCTCTTAGCAACATTCAAATATACAATATAATATTGTT-AACTATAGTCACCATGCTGTGCCTTAAA
TCTT-AGGACTTATTAATCTT--ATAATTGAAAGTTTGTACCTTTTGGTCAC--CTTCACCC-TTTCCCCGACCC-----
-------TCCAGCCTCTGAAAACTACCAATCTGTTTTTTGTTTCTATGAGTTCA---------ATATGTTTTAGATTCAA
CATAT---TGAGATCATACAGTATTTGTCATTC-TCTGCCTAACTTATTGTACTTAATATAATGCTTTCAAGGTCCATCT
ATGGTGTCACAAATGGCAGGATTTCC---TTCTTTTTAATGGCTGGATAAAATATTCCATTGTGTA-ATACAC--CACAT
TTTCTTTATCCA-TTTATCCATTGATGGACATTTACGTAGTTTCCATGCCTTGGCTATTGTAAATAATGCTACCGTGAAC
A-----TAGGGGTACAGATATCTC-TTTGACATAGTGATT--TTATTTCCTTCAGATATGTAC-----------------
TATG-----------------------------------------------------CATTAGTTCTTA-----AGTTTC
TTCTCTCAGAGTCATAATTTCTAGG-------------------------------------------------------
--------------------------------------------------------------------------------
-----------------AGCAGTCACATGGCGTGCCTATCAGAAGCATGGAATTTGGAA-ACAGAGC
>Condylura_cristata
TTCAA---ACTAGAATATTGCC----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------AAGGACTCAAAAT-GAGATTACTTAGC-AATTATA---TATGTCTCAGT-TCTTAAA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------AATTCC
TC---TCTGAGTCATAAT-TCTATG-------------------------------------------------------
--------------------------------------------------------------------------------
-----------------AGCAGTAACATAATGTACCTGTTAAAAATATGGAATTTGGAA--TAGATC
>Uropsilus_gracilis
TTTAA---ACCAGAATATTGCC----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------AAGGACTCAAAAT-GAGAACACTTTAC-AGCTATA---TATG--TCAGT-TCTTAAA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------AATTCC
TC---TCTGAGTCATAATTTCTAAG-------------------------------------------------------
--------------------------------------------------------------------------------
-----------------AGCAGTAACATAGTGTACCTGTGAAAAGTATGGAATTTAGAA--CAGATC
>Homo_sapiens
TTTAA---ATGAGAATATTTCTTTTTTCTTTTCTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCGCTCTCTCACCCAGGC
TGGAGTGCAGTGGTGAGATCTTGGCTCGCTGCAACTTCCATCTCCCGTGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAT
GTAACAGGCGCCCACCAACACGCCCAGCTAATTCTTGTATTTTCAGTGGAGACAGGGTTTTGCCATGTTGGCCAGGCTGG
TCTTGAACTCCTGACCTCAGGTGATCTGCCCGCCTTGGCCTCCCAAAGTTCTGGGATTACAGGCATGAGCCATTGCATCC
GGCCCTGAACCAGAATATTTCTAAGGACATTAAATAGGGAGAATCTACCCAGCAATA---TATCCTTTAATGTCTT--A-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------AATTCC
TTCTATCAGAGTCACAGTTTCTAGGGAGACATTTGTATAGGGTACCTGCTAAAAGTGTAAAATTTGGAATTCGGATGTGA
TTTCAAATTCCCTATATGCCAATTATTTGAGAATCTACCCAGTAATATATGCATTAATGTCTTAAATTCCTTGTGTTGGA
GTCACAATTTCTAGGGAGACATTCATATAGTGTACCTTCTAAAAAGATGGAATTTAGAATTCAGATC



Dog430_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
TTTTTCCAGCTTTATTGAGGT-ATAATTGACAAATAAAAAT-TGTATATATTTAAGGTGTACAACGTGATGTTTTGATAT
AC-GTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATC---ACCTCACATAGTTACCA-------
---TTTTTTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAAATTTCAAGTATACAATACAGTATTATTAA--
-C--TATAGTCACCATGCTGTAC----ATTAGATCTCCAGAACT------------------------------------
---------------------------------------------
>Canis_familiaris
AGGTTATGCTGCAGTAACA----AATAATGTTAAATCTCAGTGGCTTAAAAGAA---CAAAAGGGTT------------T
TTTTTTAAGTTTTATTGAGAT-ATAATTGACAT-TGGCACTGTGTCTAAGTCTAAGGTGCACAGCAAAATGACCTGACAT
---CCATATATTGTGCTATGACTACCACAATAAGTTTAGTTAAT---GCTATC---ACCTCATCAAGTCACAAAAAT---
TTTTATTTTGCCTCAGGATGAGAACTTTTAGGATCTAGTCTTTTAGCAACTTTCAGATATACTATTCAGCAGTGTTAA--
-C--TACAGTCATTGTGTTGTAC----ATT----------------------------------------------CAAG
TCCAATACAAGCTGGCAGGAAGG--TCCTGCTCATGGCAGTTTCT
>Felis_catus
AGATTAATCTGTGGTAAC--------AATGTTAAATCTCAGTGACTTAAAAGAA---CAAAAACTTTTTAATT-------
--TTTTTAGTTTTACTGAAAT-ATAATATACATACAACACT--------GTTTAAGATGTACAGCATAATAACTTGACAT
---CCATATGTTGTGCAATGACCACCTCA-------------------CTATC---ACCTCA-CTAGCTACAAAA-----
--TTTTTTTTCCTTGTGATGAGAACTTTTAGGATCTACTCTTTTAGCGACTTTCAGATATACTATACAGCAGTGTTAA--
-T--TACAGTCACTGTGTTGTAC----ATT----------------------------------------------CAAG
GCCAATACAAGTTGACAGGAGGG------------------CTCT
>Manis_pentadactyla
AGTTTATACTGTGGCAACA----AATGGTGTTAAATCTCACTGTCGGTGGGGAA---CAAA-TTTTATT-----------
-----TCAGTTTTATTGAGAT-ATAAATGACATA-AACACT--GTATAAGTTTAGGGTTTACAGCATAATAACTTGACAT
---ACATATATTGTGAAGTGATTACCACAGTATGTTTAACTAAC--ACCCATC---ATCTTG-ATAGTTACAAAAAA---
----ATTTTCCCTTGTGATGAGAACTTTTAGGATTTACTCTCTTAGCAACCTTCAAATACACTACGCAGCAGTGTTAA--
-C--TATAGTCATCATATTGGAC----ATTATAT-------------CAAAAGTCTGTTTCTT---GATCTTGCTACACA
TCCAGTTCAAGCTGGTAGGAGGG--CTCTGCTCATCACAGTATCT
>Sus_scrofa
AGCTTATACTGTGGTAAC--------AATGTTAAATCTCTGTGGCTTAAAGGAA---AAAAAGTTTACTTC--------T
TTTTTTCAGGCTCATTGAGAT-ATAATTGACATACCACACT----CTAAGTGTAAAGTGTGCAGCAAAATGACTTGACAC
---ACATCTATCGTGTAGTGATTGCTGCA------------------TTCATC---ACCTC--ATGGTTATCCAA-----
TTTTTTATTTCCTCGTGGTAAGAACTTTCATGGTCTACTTTCTCGGCACCTGTGAAATA-------CAGCAGTGTTGAGT
GTTTTGTCGTCATCCTGTTGTAC----ATCCCAT-------------CAAGTGTTTACCTCTT---GATCCTCCTTCACA
TCCCACACGAGTCGGCAGGAGAG--CTCTGCTCATCGCTGGCTCT
>Bos_taurus
AGCTAATACTGTGAT--------AATAATATTAAATCTC---GACTTAAAGGAA---CA--------------------T
TTTTT------TTTTTCAGAT-ATAATTGACATACCACCCG----GTAAGTTTAAGGCGTATAGCATAATGACTTTACAT
AC-ATATATATTGTGTAATGGATAGCACAGCAAGTTTGGTTAAC--ATTAATA---ACCTTGTATAGTGACC----TCCA
TTTTTTATTTCCTTCTGATGAGAACTTTCAGAATCTACTCTCTTGGCAACTTTCAAATATATCAGACAGCAGTGCTGA--
---------CCGTTATGTTGTGT----ATCACAT-------------CAAACATTTATTTCTC---AATCCTGCTACATG
TCCCATACAAGTTGGCAACTGAG--CTCTGCTCATCTCAGTCTCT
>Equus_caballus
AGCTTATACTGTGGTAACA----AATAATGTTCACTCTCAGTGGGTTAAAGGCA---CAAAAGTCTATTTCT-------T
TTTTTTCAGTTTTATTGAGATAATAATTGACATACAACACT--GTGTAAGTTTAAGGTGTGCAGCATAATGACTTGACAC
---ACACATATTGTGAAATGATTACCACAATCAGTTTAGTTAAC--ATCTATC---ACCTCATATAGTTACAAGAAA---
ATTGTTTTTTCCTTGTGATGAGAACTCTTGGGATCTACTCCCTAAGCAACTTTCTGATATACTATACAGCAGTGTTAA--
-T--TCTAGTCCTCAGGTTGTAC----ATTGCAT-------------CCTAAGTTTATGTCTT---GATTCTGCTACAAG
TCAAATACAAGTTGGAAGGAGAG------------------CTCT
>Ceratotherium_simum
AGCTTATACTGTAG--ACA----AGTAATGTTAAATCTCAGTGGCTTAAAGGCA---TGAAGGTTTATTTCTTTTT---T
TTTTTTCGGTTTTATTGAGAT-ATAATTGACAAACAACACT--GTATAAGTTTAATGTGTCCAGCATAATGACTTGACAT
---ATATATATTGTGAAATGATTACCACAATAAGTTTAGTTAAC--ATCTATC---ACCTCATATAGTTACAAAAAA---
AATTTATTTTCCTTGTGATGAGAACTTTCAGGGTCTACTCCCTAAGCAACTTTCAAATATACTATACACCAGTGTTAA--
-T--TATAGTCATGATGTTGTAC----ATTACAT-------------CAAAAGTTTATTTCTT---GATCCTGCTACAAG
TCCAATACAAGTTGGTAGGAGGG------------------CTCT
>Myotis_myotis
AGCTCTTACTGTGGTCACCATGCGATACTTTGAAATCTCAGTGGCTTAAAGGAA---CCAAGATTT-------------T
TTTTTTCAGTTCTGCTGAGAT-ATAATTGACATACAACACT--GCACACATTTAAGGTGTGCAGAGGAACGACTTGTCAT
GCACCACATATTGTGAGATGATT-CCACAGTAAGTTTAGTTAAT--ATCCATCATGACCTCACATAGTTACAAAAAAACA
TTTTTTTTTTACTTGTGATGAGAACTTTCAGAATTTACTCTCTTAGCAAGTTTCAAATATGCCAGACAGCGGTATTAA--
-CTATATAGTCA---------AC----ATTGCAT-------------CGACGGTTTCCTTCTT---GAGACCACTGCAAG
CCCGGCACAAGTTGGCAGGAGGGCTCTCTGCTCATGGCAGTCTCT
>Rousettus_aegyptiacus
CACTTACACTGTGGTAATGATATAATAATTGTAAATCTCAGTGGTTTAAAGGAA---CAAAAGTTTG------------T
TTTTTTTAGTGTTATTGAGAT-GTAATTGACACAAAACACT----ATAAATTTAAGGTGTGCAGCATAATGACTCGATAC
---ATGTATGTCGTGT-----------------------------------------------ATAGTCACAAAAAT--A
TTTCTGTTTTACTTGTGATGAGAACTATCAGGATCTACTCTCTTA--------------------CCAGTAGTGTTAA--
-CTATATAGTTGTCATGT---ACATTAATTACAT-------------CAAAGGTTTATTTCTC---TGTCCTGCTGCAAA
TCCAATATAAGTTGGCGAGAGGGCTCCCTGCTCATTGCAGTTTCT
>Condylura_cristata
AGTTTATACTGTGGTAACA----AATACTGTGGAATCTCAGTGTTTTAAAGAAA---TGAGAGTTTAGTTTT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------GGTCCTGATAGAAG
CTCAATACCAGTTGGCAGGAGAG--TTCTGTTCA--------TCT
>Solenodon_paradoxus
AGCATATACTGTGATAGCA----AATAATGTTATATTGCAGAGATTTA--GAGA-----AGAGTTTCTTTCTC-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------TATCCTGCTACAAG
TCC-ACACAAGT----AGGAGGGCTGTCAGACTCCTGTCATCTCT
>Heterocephalus_glaber
AGCACACACTACAGTAACA----AATAATGCTAAATCTCAGTGGCACAA-GAAA---CAAAAGCTCATGTCTC-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------CATCTTGTTACAAG
TCCAGAACAAGTTGGTAGGAGGG--CTCTGTGTCTCGCAGTCTCC



Dog431_LINE

>L1_CARN7_3END
--------------------------------------------------------------------------------
GGTGACAGATGGTAACTA---GACTTATTGTGGTGATCACTTCACA--AT------------GTATACAAATGTCGAATC
ACTATGTTGTACACCTGAAACTAATATAACATTGTATGTCAATTATACTCAAAT---------------AAAAAAA----
--------------------------------------------------------------------------------
-------------------------
>Canis_familiaris
AGCGACAGAGTAA---TATATTATTAT-AGAAAAA-TCCCATACAAAATGATAAT---AAGAACTC-----AGAGGA---
-------GATGTCAAGTA---GACTTATCGTGATCATC-TTTCTCA--AT-------------TACACAAATATCATATC
ATTATGTTGTATACCTGAAACTACTATA--ATTATATGTCAATTGTATCTCAATTAAA-----------AAGGAAAGTCA
AATCACCACCAC------CAACAATAAAA---AAGAACTCA--GG---AAAAAA----TAGAT-GAAGTTACACATAATT
CA-AAATGAGGATTTTAAAGGGCTA
>Felis_catus
AGCAAAGGAGTAA---TATATTATTATAAAAAAAA-ACCCATACAAATTGATAAT---AAGAACTC-----AGAGAA---
-------AAGGTTAAGTA---GACTTCTTGTAGTGATCATTTCTCA--CT------------TTACACAAATATCATATC
ATTATGGTGTATACGTGAAACTACTATA--ATTGTGTGTCAATTATATCCCAATT--------------AAAAACGATCA
AATCTCTATCAA---TACTGCCAACAGAA---AAGAATTCA--GG---AAAAAAAAAATAGGC-AAAGTTATGGATAATT
CGCAAATGGTGATTTTAAA--ATTA
>Manis_pentadactyla
AGCAAAGGAGTTA---TACATTATAG--AGAAAAA-TCCCACATAGACTGA---T---AAGAACTC-----AGAAGA---
-------GACATTAACTA---GATTTACTG---TGATCACTTCACA--AT------------ATACACAAATATTGGAAC
ATTATATTGTACATCTGAAACTAACATG---TTGTATGTTAATTATATCTCGATT--------------AAAAAAACAAC
AACCCCCCCCAC-----CCCACACACTAA---AAAAAATCA-GGG---AAAAAA----TGGGC-ACCACTGTGGATCATT
CACAAAGGATGATTTTAAATGGCTA
>Sus_scrofa
AGC-AAAGAGTAA---AATGCTGTTGCAGAAGAAAGTCCCACAGCGA-TGATGAT---GAGAATC------AGAGGG---
-------GATGCTAACTG---GACGTACTG-AGTGGTCACGTCACA--AT------------ACACACAAACACTGAATT
ATCACACTGTACACCTGAAACTAACACA-------GTGTAAATTATTTCTCAAAAAAAAAAAA------AAAAAACCCCA
AACTATCACCAC------CACCACCAAGA---AAGAACTTGGTGG---AAAAAAAA--TGGGCAAATGTTAAG--TAATT
CATAAATGGTAACTTCAAATGGCTA
>Tursiops_truncatus
AGCAAAGGGATAA---TATGCTATTAC-CAAAAAA-TCTCATGCACATTGATAAT---AAGGATTC-----AGAGGA---
-------AATGTTAACTA---GACTTACTGAGGTGGTCATTTCACA--AT------------ATATACAAA-ATTGAATT
ATTATATTGTTCACCTAAAACTAATGTA-------ATGTCAATTATATCTGGAAAAAAAAAAAAACTACAAAAAAACCCA
AACTGCCACCAC---------CACCAATA---AAGAACTCAGTGG---AAAAAAA---TGGGCAAAAGTTACAGATAACT
CATAAATGATAATTTTAAATGGCTA
>Equus_caballus
AGCAAAGGAGTAA---TATATTATTAT-AGAAAAA-TCCCATACAAATTGATAAT---AAGAACTC-----AAAGGA---
-------GATGTT-ACTA---GACTTATTGTGCTGGTCATTTC-----------------------ACAAATATTGAATC
ATTATATTGCATACCTGAAATTAATATATTGTTATA-GACAACTGTATCTC------------------AAAAAAAATCA
AACTACCACCAC------CAACAACAAAA---AAGAACTCAGGGG---AAAAA-----TGGGCAAAAGTTATGAATAATT
CACAAATGATGATTTTAAATGACTA
>Tapirus_indicus
AGCGAAGGAGTAA---TACATTTTTAT-AGAAAAA-GCCCATACAAATTGATTAT-------------------------
----------------TA---GACTTATTGTGGTGGTCATTTCACA--AC------------ATATACAAATACTGAATC
ATTATATTGTACATCTGAAACTAATATATTGTTATATGTCAACTGGATCTCAATTAAAA----------AAAAAAAATCA
AACCACCACCACTACTATCAACAATAAAA---AAGAACTCA--GG---AGAAAAA---TGGGCAAAAGTTATGCATAATT
GACAAATGATGATTTTAAATGGCTA
>Myotis_myotis
AACATAGGAGTAATACTACATTATTAT-TTAAAAA-CCCCATAAAAATTGA---T---AAAAACTCAAGAGAAGAGA---
-------GAGGTTAACTATTTAAACTACTGTGGTGGTCATTTCACAATAT------------ATATATAAATCTCAAATC
ATTATATTGTATACCTGAAACTAATATAATGTTATATGTCAATTATACCTCAATTTAAA----------GAAAAAAATCA
AACCACCACCAC------CA------------CCAACCTTA--GA---AAAAAAA---TGGGCAAAAGTTATAGATAATC
CCCAAATGATGATTTTAAGTGGCTG
>Rousettus_aegyptiacus
AACATAGGGGTAA---TACATTAG----AAAAAAA-TTCCATACCATTTGATAAT---AAGAACTC-----AGAGAA---
-------TGAGGTGATTATTTAAC-TACTGTAG-GGTCATATCATAGTATTGTATAATAATAATGTATAAATATCAAATC
ACTATATTGTACATGTGGAACTA------------ATGTCAATTATATTTAAATTCAAA----------GAAAATAATCA
AACCACCAACAA------AAATAACAAAA---AGGAACTCA--GT---AAAAAA----TAGGCAATAGTTACGGATAATT
CACAAATAATGATTTTAAATAGATA
>Condylura_cristata
AGCAAAGGAATAA----------TTAC-------A-TCCCATATAATCTGATAGT---AAAAATCC-----AAAGGT---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------AGAAAAA---TGGGCAAAGGTCTGAGACACTT
T----------ATTTCAGATGACTA
>Solenodon_paradoxus
AGTAAA-----AATGCTAGTTTATTA--GAGAAAA-TTCTATACAAATTGAAAAT---AAGAACCA-----GAAGGG---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------AAAAA-----TGGGCAAAAGTTACAGCTAATT
CAAAACTGATGATTTTAAGTCACTA
>Homo_sapiens
AGCAAAGGAGTAA---TACCTTATGGT-AGAAAAA-TCCTATACAAATTGA---T---AAGATCTC-----AAAGGA---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------AAAA------TAGGCAAAAGATACGGACAATT
TACAAA-AATGATTTTAAATGGTTA



Dog432_LINE

>L1_CARN7_3END
--------------------------------------------------------------------------------
TGGTGATCACTTCACAATGTATACAAATGTCGAATCACT--ATGTTGTACACCTGAAACTAATATAACATTGTATGTCAA
TTATACTCAAAT----AAAAAAA---------------------------------------------------------
---------------------
>Canis_familiaris
TCATGTAAC---TCATC---CAAATTAGGATACTTTTGAAAGCA----AGAGTGCTGTAA----ATCATTAAGCCAA---
--------------CAATATATACAAATGTCAGATCATT--ATGTTATACACCCTGAACTAATATAATGCTATATGTCAA
TTAGACCTCAAT----AAAAAAA---T-CATTAAGCCTA---GACAACATAAGTAAATTGTGA------CTAGT--TTTA
GACC--CTTTCATCCAATTCC
>Felis_catus
TCATGTAAC---TCATC---CAAATTAGGATACTTTTGAGAGCA----AGAGTGCTGTAA----ATCATTAAGCCAA---
--------------CAATATATACAAATGTCAGATCATT--ATGTTGTACACCTGAAATTAATACAATGTTACATGTCAA
TTATACCTCAAT----AAAAAAA---A----CAAGCTTA---GACAACATGAGTAAACTGTGACTAGTCTTAGT--CTTA
GACC--CTTGCATCCCACTCT
>Manis_javanica
TCATGTAACTTATCATC---CAAATTGGGACACTTGTGAGAGCAGAAGCCAGTGAAGTTA----GTCATTTAG-CAG---
--------------CAAGAGATATGAACGTCAGATCATT--ACGTTGCACACCTGAAACTAATATAATGTTGTATATCGA
TTCTATTGCAAG----AAA-------------AAGCCCA---G--AGCATGAGTAAACTATGACTGTTGCTAGT---TTA
GACT--CTTCCGTCCCACTCC
>Sus_scrofa
TCATCTCAC---TTATC---CAAATGAGGACACTTTGGAGACTGACGGAGAGTGCTGTTA----ATCATTAAGCCAA---
--------------CAATGTATACAAATATTGAATCATT--ATGTTCTACACCTGAAGCTAATATAATGTT---TGTCAA
TTAAACCTCAGT-TTAAAAAAAA---ATCATAGAGCCAA---GACA---TGAGTAAACTGTGACTGTCTCTAGT---GTT
AACT--TTCCCATCCCATTGC
>Bos_taurus
TCATATAAC---TTACC---CAAATTAGGACACTTTTGAAAGCAAAGGAGCGTGCCATTA----ATCATTAAGCCAA---
--------------CAATG-ATACAAATATTGAATCATT--ATGTTCTACACCTGAAACTAATAAAATGTT---TGTCAA
TTATACCTCAATTTTTAAAGAAA---TCCATTAAGCCAA---GACA---TGAGGAAATTGTGACTGTGTCTAGT---TTT
AACT--CTCCCGCCCCACACC
>Equus_caballus
TCATATAAC---TTATCA-CCAAATTAGGACACTT--AAGAGCAAAAGAGAATGCTGTTA----ATCGTTAAGCTGA---
--------------CAATCTGTATAAATAGCAAAAC-----ATGCTGTACACCTGAAACTAATGTAATGTTATATGTCAA
TTAGACCTCAGT----GAAAAAA---TTCATTAAGGCTA---GATAACCTGAGTAAATTGTGACTGTCTCTGGT--TTTA
GACT--CTT-CATCCCACTCC
>Ceratotherium_simum
TCATATAAC---TTATCATCCAAACTAGGACACTTTTGAGAGCGAAAGAGAGTGCTGTTA---CATCATTAAGCCAA---
--------------CAATATATACAAATATTGAAACATC--ATGTTGTACACCTGAAACTAATATA--------TGTCAA
TTATACCTCAAT----AAAAAGA---ATCATTAAGCCTA---GACAACGTGAGTAAATTGTGACTGTCTCTGGT--TTTA
GACT--CTTCCATCCCACTCC
>Myotis_myotis
TCATATAAC---TTATC---CAAATTAGGACACTTTGGAGAACTAAAGAGAGTGCTTTTA----ATCATTAAGCC-A---
--------------CAATATATACGAATAT-GAATCATTATATATTTTACACCTGAAATTAAT-----GTTACATGTCAA
TTGTAGCTCAAT----TAAAAAC---TTCATTAAGCCGA---GATAACATGAGTGCATCGTGACTAGC--------TTTA
GAGT--CTTCCATCC-ACTCC
>Rousettus_aegyptiacus
TCATATACT---TTATCATCCAAATTAGGGCACTTTTGAAAGAAAACGAGAGTCCAGTTG----ATTATTAAGCCAG---
--------------CAGTGTATACAAATATCAAAGT-----ATATTGTGCAACTAACATTAATGTAATGTTA--TGTCAA
TTATACCTCAAT----GAAAAAA---TTTATTAAGCCAA---GGTAACATAAGTCCATTATGACCATTTCTAGT--TTTA
GACT--CTTTCATCCTACTCC
>Condylura_cristata
TT-TGTAAC---ATAGCACCCAAAGTAGTATGTGCTTGAGCCTGAGAGGTA-----GTT---------------------
--------------------------------------------------------------------------------
--------------------------ACCATTAAGCCA----G-CGTAAGGAGAAAAGTACGACT---------------
---------------------
>Erinaceus_europaeus
NNNNNNNNNNNNNNNNNNNNNNNATTAGGATAATTTTGAAAGCTAAAGAGA--GCCATTA--------------------
--------------------------------------------------------------------------------
--------------------------ACCA-AAAGTCAC---AGTACCTAGAGTAAATT--------CCCAAGT---TTA
GGT---ACCCCATCCTATTCC
>Homo_sapiens
TCATATAAC---TTATC---CAAATTAGGACACTTTTGAGAATGAAAGAGAGTGCTATTA--------------------
--------------------------------------------------------------------------------
--------------------------GCCATTAAGCCAA---AACA--AGGAGTAAATTGTGACTGTCCCAAGCAAATTG
GATG--TGTGG---CCACTCC



Dog433_LINE

>L1_Carn7_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------TTTTTTTATTTGAGTATAATTGACATACAATGTT-ATATTAGTTTCAGGTGTAC
AACATAGTGATTCGACA-TTTGTATACATTGTGAAGTGATCACCACAATAAGTCTAGTTACCATCTGTCACCATACAANG
TTANTACAAT------------------ATTATTGA--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------CTATATTCNCCATGC-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------
>Canis_familiaris
GCTAATATCTAGG----------------------CACACAT-TACCTATATATAGTTA------GAAACTTAGAAATAT
ATAT----------A-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------TATATTTTGAAAGTCCTCTCTGATGACTGTGGCCCA---GGCACTC-
------TGTTC---CTCT------------TTAACAGAGGTAAAATTGACTTATAACTTC------ACATTCAGGTGTAC
AGGATAAAGATTTGATA-CTTGTCCACATTGTGAAATGAC-------GTGAGTCCAGTTAAC---TGTCATCGTACATGG
TTACAGAA---------------TTTCTTGTAATGA--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------C--TTTTAAGAT-----------GGCACTCTGTTC---TTAT---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------GAATG--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------CTTTTCCTT-----------------CTGAGAGCCCATTTATT
>Felis_catus
GTTCATAACTAGG----------------------------------CATACACA----------TGTACCTAGATGTAT
TTAGTGATGGAAGCA-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------TTTACTTTGAGAGTCCTCTCTAATGACTGTAGTGTA---GGCACTC-
------AGTTC---CCTTTTT---------TTAACTGAGGTAAAATTGATCTCTCACCTT---ATTAGTTCCAAGTGTAC
GACATAATGATTTGATA-TTGGTATGCATTGTGA------CATCTTGGTAAATCT-----------GTCACCGTGCATGG
CTACGACACT------TTTTTTTTTTCTTGTGATGACTTTTGTTTTTTATGTTTATTTATTTTTGAGGGAGCGATAAGAG
ACAGAGCGTGAGCAGGGGAGGGGCAGAGAGCGAGGGAGACAGAATCTGAAGCAGGCTCCAGGCTCTGAGCTGTCAGCACA
GAGCCGGATGCAGGGCTCAAAACCACAAATTGTGATATCACGAACTGTGAGATCATAACCGACCGAGCCACCCAGGCGTC
CGTCCCTCTTGTGATGAC--TTTTAAGGT-----------GGCACTCTATTC---TTAT---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------ATATG--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------CTTTTCCTT-----------------CTGAGAACCCATGTATT
>Manis_javanica
GCTAATAACTAGA----------------------TAGGCAC-C---------------------------------CAT
GTGC----------C-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------TGTGTTTTTTAAGTCAACTCTAATGACTATAGCCAA---GGCACTG-
------TGTTC---TTT---------------------------------------------------------------
---------------------------------------------------------TTATC---TGTCACCATCCATAG
TTACA-------------TTTTTTTTCTTGTGATGT--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------C--TTTTAAGAT-----------GGCACTCTGTTC---TTAT---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------ATACA--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------CTTTTCCTC-----------------CTGAAAACCCATTTATC
>Sus_scrofa
GTTAATAACTAGG------------------------------CACACACACACAC---------CCCACCCAAATATAT
GTAG----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------TATTTGAGGATCACCTTTAATGACTTTAGCCTC---AGCACTC-
------TGTTC---TTTTCCT-TGTTTTAAAAACTTGAGGTGTAATTGACATACAGTGTTAATGTTAGTTTCAGGTGTAC
AGCAC-------TGATA-TTTCTATACATTGCAAAACAGTCACCACAATAAGTCTAGTTAATACCCATCGCCATATGTAG
TTAGAACAATTTCTCCCCTTGTTTTTCTTGTGATGA--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------GAGGAC----TTAACAG-----------GGCACTCTGCTC---TTCT---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------ATCTG--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------TTTTCCTT-----------------CTGAGAACCCATTCATT
>Bos_taurus
GTTAATACCTGGGAGTGTGTGCATACGTGCATGTGCATGCGTGCACACACACACA----------CACACCTATAAATGT
GTAG----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------TTTTTGAGAATTATCTTTAATGACTTCAGTCTA---GGCACTC-
------TGTGA---TTTTTCT-TGTTTTTAAAAACTGAGATGTAATTGTTACATAAT----ATATTAATTTCAGGTGTAC
AACAT---GATTTGATA-TTCATACACATTGCAAAATGGTCACCATAGTAAGTCTAGTTAATATCCATCACCA-ACATAG
TTAGAGCAGT-TTTTCTCTTTTTTTTCTTGTGTTCA--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------GTACTTTTTTAACAT-----------GGCACTCTGTTC---TTAA---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------ATGGCTTCCCTTGTAGCTGAGCTGGTAAAGAATCCGCGTGCATTGTA
GGAGACCTGAGTTAGATTCCTGGGTCAGGAAGATTCCCTGAAGAAAGAAATGGCAACTCACTCCAATATTCTTGCCTGGG
AAAGCCCATGGACAGAGGAGCCCCGCGGGCTACAGTCCATGAAATCACAGAGGATTGGACACGACTGAGCTACTGACACT
TTCGCTTCACTGTTCTTAAATATGCTCCTCCTT-----------------GTGAGAACCCATTTATT
>Equus_caballus
GTTAATAACTAGG--------------TGTACTCACACACACACACACACACACA----------CTCACTCACTCATAT
GCACACCCCTGTATA-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------TACGTTTTGAGAGTCATCTTTAATGGCTTTAGCCTA---GGCACTC-
------TGTTC---TTTTTTTAAAAAAATTTTTATTGAGGCATAATTGACATATAAC----ATATTAGTTTCAGATGTAC
AATGTAATGATTCGATACTTTGTATACACTGTGAAATGATCACAACGGTAAGTCTAGTTAACATCTATCACCATACA---
-----------------CTTTTTTTTCTTGTGATGA--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------GAAC--TTTTAAGAT-----------GGCACTCTGTTC---TTATATAGTGTTGAACCGCGTAAGG
ACGTTTCAGTCAATGACGGACCGCATATACAATGGTGGTCCCATAAGATCAGTACCATATAGCCTAGGTATGTAGTAGGC
TGTATCATCTGGGTTTGTGTAAGTGCACTCTATGATGTTCGCACAATGACAAAATCGCCTAACGATGCATTTCTCAGAAT
GTATCCCTATCGTTAAGTGATGCAGGAC--TGTATG--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------CTTTTCCTT-----------------CTGAGAACCCATTTATT
>Ceratotherium_simum
GTTAATAACCAAGCATACTCACTCACACACACACACACACACACACACACACACACACACACACACACACACACACATAT
ATAC-CCCTATTATA-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------TATTTTTTGAGAGTCATCTCTAATGGCTTTAGCCTA---GGCACTC-
------TGTTC---TTTTTTT-AAAATTTTTTTATTGAGGTATAATTGACATATAGCCTT-ATATTAGTTTCAGGTGTAC
AACGTAATGATTTGAT------------------------CACCACAGTAAGTCTAGTTAACATCCATCACTATACA---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------TGTAGCCTAGTTGTGCAGTAGGC
TATACCATCTGGGTTTGTGTAAGTACACTCTATGATGTTCGCACAACGACAAAATCGCCAAACGATGCATTTCTCAGAAC
GAATCCCTGTCGTTAAGCAATGTATGATGGTATATG--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------CTTTTCCTC-----------------CTGAGAACCCATTTATT
>Myotis_myotis
GATAATAACTAGC----------------------CATGCATATAGACAGACACA----------CACACATA-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------TTTTTGAGTGTCATCTCTAATGACTTCAACCTA---AGCCCTT-
--AAACGGTTT---TTTTTTT---------------GAGGTATAATTGATGTACATT----ATATTAGTTTCAGTTGTGC
AACATAATGATTTGATA-TTTGTATACATTGTGAAATGATCACCACAATAAGTCTAGTTAACATCTGTCACCTTATGTGG
TCATAAAATGTTTTTTTCTTTTTTTCCTTGTGTTTA--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------GGAC--TTTTAATAT-----------GACACTCTGTTT---AT-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------G--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------CTTTTCCTT-----------------TTGGGAATCCATTTATT
>Rousettus_aegyptiacus
CTTAATAACTAGG------------------------TGCACACACACACACACA----------CACACATACACACCT
GTATTG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------TCTTTGAGAATCATTTCTAATGA--TCAGCCTA---GGGACTTA
AAAAAATATTT---T-TTATTGAGGTATAATTTATTGAGGTATAATTGACATGTACCATT-CTATTAGTTTCAGATTTTC
A-CATAATGATTTGATA-TTTGTATACATTGCAAAATGATCACCACACTAAGTCTAGTTAAC----ATCACCATATATAG
TTATAAAATT-TTTTTATTTTTTTTTCTTGTGTCAA--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------GGAC--TTTTAAGAT-----------GGCATTATTTTT---AT-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------ATAAG--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------CTTTTTTTTTTTTTTTTTTTTTTGGTCTGGGAACCCATTTATT
>Condylura_cristata
GGTAATAACTAGG------------------TTTTCTTACACACACACAAACACAAGAGCCC---CACCCCCACACCCCT
GGGT---------AA-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------TGTTTTGTGAGAGGCCTCTTTAATGTCTTCAGCTCA-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------GGAATTATGTCT---T------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------AAATG--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------CCTTTTCTT-----------------CTGGGAAGGC-TTTATT
>Solenodon_paradoxus
GATAATAACTAGT------------------CTTACATACACACCACACCACCACCACCTAT---AGCCATGTAATAGAT
AGATAATATGTATATTTAAAAGCGAGAATGGGAGAAGAGGAAGAAACTTTTTTTTTTAAGGAAAGTTCCTTTTTTAAGGA
AAGGATATAGAGAATGGTTGCTTATTTGTGAGGTGACTAGAACAGAGTTCAGTTCTGTGTATATATTTTTAATATCAATA
GGATACCCTAGTAGTTCTAAAGTTAAGTAGACATCAGAACCCATAGAGCAAAAGCAAGTTTAACAATGGAACATTAGAAG
GATAGGAGTGAAGGTGAGTAGACAGGCAGGCAGGCAGGCAGAAGAGGAAGAAGCGTTTTATTTAGTTGTTCACATTGGTT
GCTTTCCCTAGACTGGACATAGGACTCAAGCCCAGGGGTATGTTGGTTTGCTTCTTTGGAGGTGATTGATCTAACTGCTA
CTCCACCAGGGTGCACTGGAAGAAACATTTTTTTTAGGAAGGAAAAGGAGGAGCAAGCACTTTTATTTGTTTATTTTTGG
TGGTGTTCCCCAGCCCCAGGTTGAGAAGCCAGATCCTTGGGCTTTACACTGTCTGTGACCCAGCCTCCAGCTAAGCCCCT
GGGTTGCAAGAACCTGCCTATCTGTTTTTTTTTTTTTTTCTGAGAATCATCTCTAATGAAATCAGCCTA-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------GTCATTCTGTTC---TTATAT-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------ATATG--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------CTTTTTCTT-----------------CTGAGAAGCA-TTTATT
>Homo_sapiens
GTTAATAACTAGGCATGCATGTGCACGTGCATGTGCACTCTCTCTCACACACACACC--------CCCCCCTATATACAT
ATAT----------A-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------TGTTTTTTGAGGGGCATCTTTAGTGATTTCAGCCTG-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------GGTACTCTGTTC---TAAT---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------ATATG--------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------CTCTTCCTT-----------------CTGAGAACCCATTTACT



Dog434_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
----------------------------------------------ATGGTGGTTGCCAGGGGCTGGGGGGTGGGGGAAA
TGGGGAGATGTTGGTCAAAGGGTACAAAGTTTC-------AGTTATGCAGGATG-AATAAGTTCTGGAG-ATCTAATGTA
CAGCATGGTG--ACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTA-GATCTTAAGTGTTCTCA
CCACACACAAA--AAAA--TGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTG-GTAATCATTTCACAA
TGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCA-------------------
ATTATACCTCAATAAAGCTGGAAAAA------------------------------------------------------
----------------------------
>Canis_familiaris
TCTCACTTTGCAAGCAACATAC-ATGTGTCAGCATGCACTATG-------------------------------------
---------------ATGAGTCT---AAAATGGGATGGGG-------------------------------TGGCGAAAA
T-GGGTGAAGGGGATCAAAAGGTACAAACTTAC-------AGTTATAAAATA---AGTAAGTCATGG---ATGTAAAATA
TAGCGTG-----ACTATCCTTAACAACGCTGTATTGCATATCTGAAGGTTGAGAAAAGGGTA-GATCTTAAGAGTTCTCA
GGATAGGAAGA--AAACTTGTGTAACTATATATGGGGACAG--ATGTTACATAGACT---TATT-GTGATCATTTCACAA
TATATATACATATCAAATCATTATTTTGTACACTTGAAACTAATACAG-TGTCATATATCG-------------------
ATTATACCTCAACA-----GGAAAAA-----TACAGTAAGTGGGGTTTAGAGA---TATCTGGAATTTTTCTTATAT-GT
TCC-AGGAATCCTTGGAACTATAGAGGG
>Felis_catus
CCCCACTTTTCAGGCAACATACTAT-TGTCTGCATGCACTATG-------------------------------------
---------------GTTAGTCT---AAAGTGGGATGGGGGGC------------------A---------TG---GAAA
T-GGGAGAAGGGGATCAAAAAGTACAAACCTCCA------AGTTATAAAATA---AATAAGTCATGGAG-ACGTTATGTA
TAGCATGATG--ACTATAGTTAATAGTACTGTATTGGATATTTGAAGGTTACTAAGAGGGTAGGATCTTAAAAGTTCTCA
TGATAAGAAGA--AAAACTTTGTAACTACTTATGGGGACAG--ATGTTAACTAGTCT---TATT-ATGATCATTCCACAA
TATGTATAAATATCAAATCATTATGTTATATTCTTGAAACTAATATAA-TGTTATACATC--------------------
ATTATACTTCAACA-----GGAAAAA-----TAAAAT---------------A---AATGGGGAATTTTTCTTATAA-GT
TCCAAGGAATCCTTGGAACTATAGAGGG
>Manis_pentadactyla
CCTCACTTTGTAGCCAACATACTATATGTTTGTAGGCACTATT-------------------------------------
---------------ATTAGTCT---GAAATGGGATTGGGGG-----------------------------TGGTTGAAA
T-GGGTGAAGGGGATCAAAAGGTACAAACTTTC-------AGTTATAAAATA---AATAAGTCATGGGGAATGTAATGTA
CAATATAATGCAACTACAGCTAATAATAGTCTACTGCATATTTGAAAGTTGCTTAGAGAGTA-GATGTTAAAAGTTCTCA
TCACAAGAA----AAAATTTTGTAGCT--GTGTGGCAATGG--ATGTTAACTAGACTTACTGTG-GTCATCACTT-GCCC
TATGTACAAATATTGAATCATTACGTTGCACACATGAAACTAATATAA-TGTAATAT-TTG-------------------
ATTATACTTCAATA-----GAAAAAAA----TAAAACG---GGGGTTTATGGA---TATCTGGAATTCTTCTTACAA-GT
TCC-AGGAATCCTTGTAACTATAGAGGG
>Sus_scrofa
TCTTACTTTGCAAGTAACGTAC--TGTGTCTGCATGCACCATT-------------------------------------
---------------GTTAGTCT---AAAATGAGGTTGGAGGT------------------G---------TGGGTTAAG
T-GGGTGAAGGAGAGCAGAAGGTAAAAAATTCC-------AGTTATAAAATA---AATAAATCATAGGG-ATGTCATGTA
CAGCATGGTG--ACTATAGTTAATGATATTGTACTGCATGTTTGAAAGTTGCTTAGAGAGGA-GTTCTTAAAAGTTCTCA
TAAAAGGAAAA--AA-----TATAACTGTGTATGGTTATCC--ATGTTAACTAGACTTATTGTG-GTGATCATTTTGCAG
TATGTACAAGTATCAAATCGTTATGTTGTACACCTGAAACTAATATAT-------GTATCA-------------------
ATTATACCTTAATA-----GAAAAAA-----TAAAAT----GGGGTTTAGGAA---TATCTGGAGTTTTACTGACAA-GT
TCC-AGGAATCCTTGGAACTCTTGAGGG
>Tursiops_truncatus
CCTCATTTTGCAATCAACATACTATGTGTCTGCATGCACTATTGTTAGTTTTCTTTCCTTTTTTTTAAAAAAAATATTTA
TTTATTTGCACTATAGTTAGTTT---AAAATTGGGTTGGAGGA------------------G---------TGGGTGAAA
T-GGGTGAAGGAGATCGGAAGGTAAAACATTCC-------AGTTATAAAATA---AATA--TCATGGGG-ATGTAATGTA
CAGCATGGTG--ACTATAGTTAATAGTATTATATTGCATATTTGAAAGTTGC---------------TTAAGTGCTCTCA
TAACAAGGAAA--AAAA---TGTAACTGTGTATGGTAATCA--ATGTTCACTAGACTGACTGTG-GTGATCATTTTGCAG
TATATACAAATATCAAATCATTATGTTGTATACCTGAAACTAATATAA-------GTATCA-------------------
ATTATATCTCAATA-----GAAAAAA-----TAAAAT----GGGGTTTAGGGA---TATCTGTAATTTTACTTACAA-GT
TCC-AGGAATGCTTGGAACTGTAGAGGG
>Equus_caballus
CTTCACTTTGCAAGCAATATACTGTGCATCTACATGCAGTCCT-------------------------------------
---------------GTTAGTCT---AAAATGGGATGTGGGGA------------------GGTTTGGGG-TGAACGAAA
T-GGGTGAAGGGGATCCAGAGGTATAAATTCCC--------ATGATGA-------AATAAGTCAGGGG--ATGCAGTGTA
CAGCATGGTG--ACTATAGTTAATAGTGCTGTATTGCATATTTGGTAGTTGCTAAAAGAGTA-GATCTTGAAAGTCCTCA
TCACAAGAAAAATAAAATTTGGTAACTCTGTATGGTGACAA--ATGCTCG----------TGTC-GTAATCATTTCACAA
TATATACAAATAGCAAACCTTTATGTTGTACACCTGAAACTAATGTAA-TGTTATACATCA-------------------
GTTATACTTTAATA-----GCAAAAA-----TAAAAT----AGAGTTTAAGTA---TATCTGGAATTTTTCTTACAA-GT
TCC-AGGAATACTTGGAACCAAAGTGGG
>Ceratotherium_simum
CCTCACTTTGCAGGCAACATACTATGTGTCTACATGCACTATT-------------------------------------
---------------GTTAGTCT---AAAATGGGATTTAATAG------------------GGTTTGGGGTTGGGCGAAA
T-GAGTGA-GGGGATCAAAAGGTACAAACTTCCCTTATTTATTTATAAGATA---AATAAGTCATGAGG-ATGTAATGTA
CAGCATGGTG--ACTATAGTTAATAATACTGTATTGCATATTTGGTAGTTGCTAAGAGAGTA-GATCTTAAAAGTCCTCA
TCACAAGAAAAATAAAATTTTGTAACTATGTATGGGGACAG--ATGCTAACTAGATTTATTGTG-GTGATCATTTCACAA
TAGATACAAATATCAAATCTTTATGTTGCACACTTGAAACTAATATTA-TGTTATATACCA-------------------
ATTATACCTTAATA-----GAAAAGA-----TAAAAT----GGAGTTTAAGGA---TATCTGGAATTTTTCT-ACAAGGT
TCC-AG-AATCCTTGGAACCATTGAGGG
>Myotis_myotis
CCTCACTTTGCAGGCAGCATACTACATGTCTACCTTCACTATT-------------------------------------
---------------GTTAATCT---AAAATGGGGTTTGGAGG--------------------TGTGGGTGTGGATGAAG
T--GGTGATGGGGATCAAAAGGCACAAAGTTCT-------AGTTGGGGAA-----AAAAAATCATGGGG-ATGTAATGTA
TAGCATGGTG--ACTATAGTTAATA---CTGTATTGCATATTTGAAAGTTGCCAAGAGAGTA-GATCTTAAAAGTTCTCT
TCACGAGAAA---AAAAAATTGTAACTACAGGTGGTGATGG--ATGTTAACTAGACT---TGTGAGCGATCATTGCACAC
TATATACAAATATCAAATCATTATGTTGTACATCTGAAACTAATATAA-TGCTACATATCA-------------------
ATTATACCTTAATA-----GAAGAAA-----TAAAAT----AGTGTTT-GGGG---TATCTGGAATTTGTCTTACAT-GT
TTC-AGGAATCCTTGGCACTATAGAGGG
>Rousettus_aegyptiacus
CTTCACTCTTCAGGCAACTTACTATGTGTCTA-ACGCCCTACT-------------------------------------
---------------GTTAATCC---AAAATGAAGTTTGGGGT------------------GGGGTGGGAGTTGG-GAAA
T-GAGTGAATGGGATCAAAAGGCACAAACTTCC-------AGTTATAAAATATTTAATAAGTCATGGGG-A-----TGTA
CAGCATGGCG--GTTATAGTTAATAATACTATATTGCATATTTGAAAGTTGTTAAGA---TA-GATTTCAAAAGTTTTCA
TCACAAGAAAA--AGAATTTTGTAACTATGTATGGTGACGG--ATACTAATTAGATC---TATG-GTGTCCATTTCACAA
TACATATGAATATCAAATCATTATGT-----ACCTGAAACTAATATAA-TATCAACTAATATCTCTGAAACTAATATACT
ATTATATCTCAATC-----GAAAAAAAA---TAACAT----GAGCTTTAGGGA---TATCTGGAATTTTTCTCACAA-GT
TTC-AGGAATCCTCAGAACTATAAAGGG
>Condylura_cristata
CCTTGCTTTGCAGGCAACACACTATGTGTCT-------------------------------------------------
---------------ATTAATGT---AAAATGGGTTTTAGGGA-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------AACCTGGTATTTTTCTTACAA-GT
TCC-AGGAATCCTTGGAATTATAAAGGG
>Sorex_araneus
TCCCACTTTGCAGACAGCACATAGTGTGTCTACT----------------------------------------------
---------------GCTAATCT---AAAATGAG-TTTAAGGA-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------TACCTGTAATTTTTCTTATAA-AC
TCT-ATGAACCCTTGGATTTAGTAAGAG
>Homo_sapiens
CCTCACTTTGCAGACAACCTACTATGCGTCTGCATGCACCACT-------------------------------------
---------------ATTAGTCT---AAAATGAGGTTTAGGGA-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------TGTCTGGAATTTTTCTTACAA-GT
TCC-AGGAATCCTTGGAGTTAGAGAAGG



Dog435_LINE

>L1_CARN7_3END
---------------------------------------------------------------------GTANTAACNTT
GTAT--GGTGAC-AGATGGTAACTA---GACTTATTGTGGTGATCACTTCACAATGTATACAAATGTCGAATCACTATGT
TGTACACCTGAAACTAATATAACATTG-TATGTCAATTATACTCAAATAAAAAAA-------------------------
---------------------------------------------------------------------
>Canis_familiaris
AAATTTGTAGACATATCTCTCTCCGGCCACCTGATGAAAACACAGAAGAG---AAAAATCGATCCT-----------TAC
GTAT--AGTGTG-GGATGTTAACTAACTAGCTTCCTGGGGTGATTATGTCATGATATATGCAAACAGTGAATCCCTATGC
TGTACACCTGAAACTGACATAAAGCTA-TCTGTCACTTA-ACCTC------------------------------AGGT-
--GAGCCACAATCT---TGACCATCCCCAAATGGTAAAGAGCAGAGAAAGAAAAGA-AC-AAAAACATG
>Felis_catus
AAATTTGTAGACATATCTCTCTCCAGCCACCTGATGAAAACACGGAAGAG---AAAAACCCAGCCT-----------TAT
GTAC--GGTGCA-GGATGTTAACTG---AACTTAGTGTGGCGATCATTTCATGATATATACAAGTAGTGAATCATTCTGT
TTTACCCCTGAAACTGATGTAACGCTA-TATGTCAATGG-ACCTC------------------------------AAAA-
--GAACTGCGATCT---CTACCATCCCCAAATAGGAAAGAGCAGGGAAACAAAAGA-AT-AAAAACTTG
>Manis_pentadactyla
AAATTTGTAGACATATCTCTCTCCAGCCACCTGGTGAAAACATGAAGGAG---AAAACCCCATCCT--------------
------------------------------------------------------------------TCAAATCACTCTGT
TGTATACTTGAAACCGGTATAATATTG-TGTATCAACTNNNNNNN------------------------------NNNN-
--NNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>Sus_scrofa
AAATTTGTAGACATATCTCTCTCCAGCCACCTGCAGAAAACATGTAACAG---AAAAG-CCATCCT-----------TAT
GTA---GGTGCT-GGCTGGGAACCA---GACTTAGTGTTGTGAGCATTTTGCAATAGATACAAATATCCAATCATTATGT
TGTGCATCTGAAACTACTATAAGGTTG-TATGTCAATTATACTTCAAAAAAAAAA--------------------AAAA-
--AAACCCTCACAT---TCACTATCCCTA---GGGGAAGGGCAGGGAAAGAAATGA-AC-AAAAACATA
>Bos_taurus
AAATTTGTAGACATATCTCTCTCCAGCCACCTGAGGGAAACATGGAAGA----AAAAGCCCATCCT-----------TAT
GTGG--GATGTCGGGATGGTACCTA---AACTTAGAATAGTGAGCATTTTGCAAGAGATACAAATATCCAATCATTATAT
TTTACATTGGAAGCTAATGCAAGGTTGTTACGTCAATTACACCTCAATTAAAACACACACACACACAC-------AAAC-
--ACAACCTCATCT---TCACCATTTCCAAATGGGGAAT-GCAGGGAGAGAAATGA-ACAAAAAACATG
>Equus_caballus
AAATTTGTAGACATATCTCTCTCCAGCCACCTGATGAAAACATGGAAGAG---AAAAACTCATCCT-----------TAT
GTAT--AGCTCT-GGATGTTAACCA---GACATACTGTGGTGATCACTTCGCAATATAGACAAATATCAAATCATTATGT
TGTACACTTGAAACTAACATAATGCTA-TATGTCAATTATTCCTCAAT---------------------------TGAA-
--AAAAAATCATCT---TCACCATCCC--------------CAGGGAAAAGAAAGA-AC-AAAACCATG
>Ceratotherium_simum
GAATTTGTAGACATATCTCTCTCCAGCCACCTGATGAAAACATGGAAGAG---AAAAACCCATCCT-----------TAT
GTAT--GGCGCC-GGATGTTAACTA---GACTTATTGTGGTGATCACTTCACAACATATACAAATATCGAATCATTATGT
TGTACACCTGAACCTAATATAATGGTA-TATGTCAATTATTCCTCAAC---------------------------AACA-
--AAAAAATCATCT---TTACCATCCCTAGGTGGCGAAGGTCAGGGAAAGCAAAGA-AC-AAAAGTGTG
>Myotis_myotis
AAATTTGTAGACATATCTCTCGCCGGCCACCTGATGAGAACATGGAAGAG---AAACACCCAACCT-----------TAT
GTATGTGGTACC-GAATATTAACCA---GATTTACTTTGGTG---ACTGCACAATATTTACCAATATCGAATCTTTGTGT
TGTATGCCTGAGACTAATATAATATTA-AATGTCAATCATATCTCAATACACACACAC-----------------ACAC-
--ACACACACATCT---TCACCATCCC-AGATGG---AGGACAGGGAAGGAAAAAA-A--AGAAACATG
>Rousettus_aegyptiacus
AAATTTGTAGACATATCTCTCTCCAGCCACCTGGTGAAAACATGGAAGGG---GAAAACTCATCCT-----------TAT
GTAT--GGCGTC-AGACATTAACT--------TACTGTGGTGATCA-----CAACATTTACAAATATTGAATCATTATGT
TGTATGCCTGAGATTAATGTGACATCA-TATGTCAATTACACCTCAATAACAACAAACAAACAAACAAACAAACAAACA-
--AAAAACGCATCT---TTACCATCCC-AGATGGGGAAGGAAAGGGA----------AC-AAAAACATG
>Condylura_cristata
AAATTTGTAGACATATCTCTCTCCGGCCACCTGATGATCATATGGAAGAG------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--AAAAACCCATCC---A-GCCATCCCCAGATGGGGAAGGACAGGGAAAGAAAAAAGACCAAAAACATG
>Solenodon_paradoxus
AAATTTGTAGACATATCTCTCTCCAGCCACCTGATAA---CATGGAAGAG------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--AAAAACCCATCC---CCGCCATCCCCAGATGGGGAAGGACAGGGAAAGAAAAAA--CCGAAAACATG
>Homo_sapiens
AAACTTGTAGACATATCTCTCTCCAGCCACCTGATGATAACATGGAAGAG------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--AAAAACCCATCC---TCACCATCGCCAGATGGGGAAGGACAGG--AAGGAAAAA-GCCAAAAACGTG



Dog437_LINE

>L1MA9_3END
--------------------------------------------------------------------------TGAGGT
GATGGATATGTTAATT-AGCTTGATTGTGGTAATCATTTCACAATGTATACGTATAT-CAAAACATCACGTTGTACACCT
TAAATATATACAATTTT-TATTTGTCAATTATACCTCAATAAAGCTGGAAAAA---------------------------
--------------------------------------------------------
>Canis_familiaris
ATTTTCACATCTC-AAAAAATAAGATTCTTCTTTTGATATTTTTAAAC------------ATGCAAAAATT---------
-----ATACGTTAACT-AACCTTACTGCAGTAATCACTTTGCAATATATAAACAT---AAAATCACAACATTGTGTACCT
TAAACTTATACAATGT--TATATGTCAATCATA-----ATAAAGCTGGAA------AAAATTTAAA---AAAT---ATTA
TCAGCTCAAGAAGCATACAAAAACAGATGGTG------------------GGACAT
>Felis_catus
ATTTTCCCATGTC--AAAAATAGTATTCTTCATTTGATATTTTTAAGC-ATAT---AAAAATGCAAAAATT---------
-----GTATATTAACT-AACCTTACTGCAGTAATCACTTTGCAACACATACATACAT-AAAATCATAACATTGTACACCT
TAAACTTACACAATGT--TACATGTCAATTATATTTCAATAAG-CTGAAA------CATATTCAAA---AACT---ATTC
TTAGCTCAAGAGGCATACAGAAGCAGGTGGTGGACTGAACTTGGCTGGTGGGGCAT
>Manis_pentadactyla
ATTTTCACATTTA--GAAAAGGGTATTCTTCTTTTGACATCTTAAAAC-ATTT---AAAAATGCAAAATTT---------
-----GGATGTTAACA-----TTCCTGTGATAAGCACTTTGCTATATACACATAGAG-GAAATAACAACGTCATACACGT
TTAACTTACACAACGT--TATTTGTCAATTGTATCTCAATAAAGCTGGAAA-----ACAATTCAGA---AACT---ATTC
TTAGCTCCAGAGGCATGCAAAAGCAGATGGTGGCTCAAATTTGGCTGGTGGGTCAC
>Sus_scrofa
ATTTTCACATGTC--AAAAATAGTAT--TTATTTCGACATTTTTAAAC-ATTT---ATAAATGCAAAAATT---------
-----TGGTTTAATGAAAACCTTACTGTAATGATCACTTTGCAATATATACATAAAT-AAAATCACAACGCTGTATATCT
TAAAGTGACACAATGTTATATATGTCAATTATCTC---ATAAAGCTGAAC------AAAATTCAAA---AACT---ATTC
CTAGCTCAAGAGGCATATGAAAGCAGATGGTGGACCCAATTTGGCTGTTGGGTCAT
>Tursiops_truncatus
ATTTTCACCTGTC--AAAAATAGTATTCTTATTTTGACATTTTTTAAC-ATTT---AAAAATGCAAAAACT---------
-----GGAT-TTAACG-AAACTTACTGTAGTGATCGCTTTGCAATATATACCTATAT-AAAATCACAATGTTGTACATCT
TAAAGTCACACAATGT--TATATGGAAATTATACCTCAATAAAGCTGGAA------AAAATTCAAA---AGCT---ATTC
TTAGCTCAAGAGGGATACAAAAGCAGATGGTGGGCCGAATTTGGCTGGTGGGTCAT
>Equus_caballus
GTATTCACATGTCAAAAAAATAGGATTCTTCTTTTGACATTTCTAAAC-ATTT---AAAAATGCAAAAGTG---------
-----GGATGTTAAACTGACCTTCCTGTGGTGATCACTTTGCAAGATATACCTACATCAAAACCACAACATCGTACACCT
TAAACTCACACAATGT--TATATGTCAGCTAGATCTCAATAAAGCTGGGAA-----GAAATTCAAG------G---ACTA
TTGGCTGAAGAGG-ATACAAATGCAGATGGTGGACCAAATTTGGCTGGTGGGTCGT
>Tapirus_indicus
ATTTTCACATGTC-AAAAAATAGTATTCTTCTTTTGACATTTTTAAAC-ATTT---AAAAATG-----------------
-----GGATGTTAACT-AACCTTACTGCGGTGATCACTCTGCAATATATACCTATAT-AAAATCACAACATTGTACAGCT
TAAACTTATACAATGC--TGTATGTCAATTATATCTCAGTAAGACTGGAAA-----AAAATTCAAGCTCAAAA---ATTC
TCAGCCCAAGAGGCATACAAAAACAGATGGTGGACCGAATTTGGCTGGTGGGTCAT
>Myotis_myotis
ATTTCCATTTATC---AAAATAGTATTCTTCTTTTGACATTTCTAAAC-ATTT---AAAAATGCAAAAATT---------
-----GG---ATAACT-AACC-TATTGTGGTAACTACTTTGCAATATACACGTGTAT-AAAACCACAG---TGTATACCT
TAAACTTACACAATGT--TATATGTCAATTATATTTCAATAAAGCTG-AA------AAAATTTAAA---AGCT---ATTC
TTAGCTCACGAGGCATACAAAAGCAGATGAGGGACTGAATTGGACTGGTGGGTCAT
>Rousettus_aegyptiacus
ATTTTCACATATC--AAAAACAGTATTATTCTTTTAACA-TTTAAAAC-ATTT---AAAAATGCAAAAATT---------
-----GG---ATAACT--AACTTATTGCAGTAATCACTTTGTAACATATACTTGTAT-AAAATCACAA---TGCGCACCT
AAAACTTACACAGT----TATAAATCAATTATATCACAATAAAGCTTAAC------AAAAATTAAA---AGCT---ATTC
TTAGCTCAGGAGGCATACAAAAGAAGATGGGAGACCAAATTTGGTGGGTGGGCCAC
>Condylura_cristata
AGTTT-ATGTGTC--AAAAATAGTATTCTCCTTTTGACTGTTTTCTGC-ATTT---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------AAAAATTCAA---ACCT---ATTC
TTGCCTCAAGAGGCATAGGAAAGCACATATTGAATGGAATTTGGCAGGGCTACCAT
>Sorex_araneus
ATTTTCATGTGTC--ACAAATAGTATTTTTCTTTTGATTTTCCCCAACAATTT---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------AAAAATGGAAA--AATC---ATTC
TTGGCT--------------------ATGGGGTTCCAAAAATGGGAG-TAGGGGGT
>Homo_sapiens
ACTCCTACCTGTT-ACAAAAGAGTATTCTTCTTTTAACATTTTAAGAC-ATTT---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------AAAAATGTAAA--AACC---ATCC
TTAGCTCAAGAGCCATACAAAAGCAGATGGTGGACTGAATTTGGCAAG--AGCCAT



Dog439_LINE

>L1_CARN7_3END
--------------------------------------------------------------------------------
-------------------------------TTTTTTTATTTGAGTATAATTGACATACAATGTTATATT----------
----AGTTTCAGGTGTACA--ACATAGTGATTCGA-CATTTG-TATACATTGTGAAGTG---ATCACCACAATAAGTCTA
G-TTACCATCTGTCACCATACAANGTTANTACAATATTATTGACTATATTCNCCATGCTGTACATTACATCCCCATGACT
T-------------------------------------------------------------------------------
---
>Canis_familiaris
GCAATGACAATC-TCTTCATTCAAAACATTCTTGGGTTTGGTTCTATTAC----AACTA---TTTTTATAGTT-------
GTTAGGT---TTTTTT---CTTCCT-------TTTTTTATTTAGGGGTAATTGACATATGACATTATGTTGCATTTTCAG
GTGGAGTTTCAGGTGGACA--ACATTACAATTCAA-TATTTGTTATGTATTATGAAATG---ATCACCACAGTAAGTTTG
GTTTAACATCTGTCACGACACACAG-------AGAATTGTTCTTTTTTTTTCTCGTTGTAGGAACT--TGTAAGAT----
----TTCCTGTAGCTGTTACT---TTGATG-----GCATCAGCTGATGCCAAGAACTGGACTGATT-TGATGCAAAA-AA
TTG
>Felis_catus
--------------------------CACCCCTGGGTTTGGTCCTACCAA----AATCA---TTTTTATAGTT-------
GTTAGTT---TTTCTT---CTTCTTCTTCTTCTTTTTTATTGAGGTGTAACTGACAAACAACATT---------------
----AGTTTCAGGTGGACA--ACGTAATGATTCAA-TATTCG-TGTATGTTGTGAAATG---ATCACCACAGTAAGTCTA
G-TTAACATCCATCACCACACACGGT---TATAGAATTA------TTTTTTCTTGTGGTAGGAACT--TTGAAGCT----
----TTACTGGAGTTGTTAGT---TTTATA-----GCATTAGCTGATGTCAAGAATTGAACCCATC-TGATGCAAGG-AA
CTG
>Manis_javanica
GCAAAGGCAATC-TCTTTATTCAAAACACTCTTAGGTTTGGTTCTATTAC----AACCG---TTTTTGTAGTT-------
GTGAGAA---CC---------------------------CTGAGGTATAGCTGACATAC---ATTTTATT----------
----AGTTTTAAGTGTACAATATATAATGATTCAG-TATTTG-CATATAATGCAAAATG---ATTGCCACACTCAGTCTA
G-TTAACATCTGCCACTATACATAGT---TACAGAACTT------TTTTTCCTTATGGTGAGAACT--TTTAAGAT----
----TTACTGTAGCTGTCAGT---TTTAAA-----AGATTAGCTGATGTCAAGAGCTGCACTGATTGTGACACAAAG-AA
TTG
>Sus_scrofa
GCAGTGGCAATC-TCTTTATTCAAAACGTTCTTAGGTTTCATTCAATTAC----AACCA---TTTTTGTACTT-------
GTTAGTT---CTTTTATCTTCTCTT----TTTGTTGTTGTCGAGGGATAACTGATATACAGCACTATATT----------
----CGTTTCAGGTGTACA--ACGTAATGATTCAA-TACTGG-TATAAACTGGGAAATG---ACCACCACAATAAGTCTG
G-TTAACATCTGTCACCATACATGGT---TAGAGAATT-------TTTTTCCTTGCCATGAGAACG--TTTACGAT----
----TCACTGTAGTTGCCCGG---TGCTTA-----GCATTGGCTGCCGTCGAGAATTGAACCGATC-TCATGAAAAACAA
TTG
>Bos_taurus
GCAATGACAATG-TTTTTATTTGAAACATTTTCAGGTTTGGTTCTATTGT----AACTA---TTTTTGTAGTT-------
GTTACTT---CTCTTTATCCTCTTT----ATCTTTTTTATGGAAGTATAATGGACACACCACATTATATT----------
----AGTTTCAGGTGTACA--GCATAACAATTTGATTATTTG-TATATATTGGGAAATG---ATTGCTACATTAGGT-TA
C-TTAACATCTGTCACCATCCATAGT---TACAGAATT-------TTTTTTCTTGTGAAGAGAAGT--TTTAAGAT----
----TTATTGTTGTTGTCAGT---TGTATAGAATTGAATTGACTGATATCAAGAACTGAACTGATT-T----TTAAA-AA
TTG
>Equus_caballus
GCAATGTCAATC-TCTTTATTCAAAACATTCTTAGGTTTGGTTCTATTAC----AACCA---TTTTTGTAGTT-------
---AGGT---TTTTTC---TTCCTT-----TTTTTTAAATTGAGGTATAATTGATCTACAACATTATATT----------
----AGTTTCAGGTGTACA--ACATAATAATTTGA-TATTTG-CATATATTGAGAAATGATCATCACCACAATAAGTCTA
G-TTAACATCTGTCACCATACATAGC---TACAGAATT-------TTTTTTCTTGCGATAAGAACT--TTTAAGAT----
----TTACTGTAGTTT---GT---TTTATA-----TCATTAGCTGATATCAAGAATTGAACCAATC-TGATACAAAG-AA
CTG
>Ceratotherium_simum
GCAATAGCAATC-TCTTTCTTCAAAACATTCTTAGGTTTGGTTCCATCATAATAAACCA---TTTTTGTAGTT-------
GCTAGGT---TTTTTT---CTCCTT----ATTTTTTTTATTGAGGTATAATTGATCTACAACGTTATATT----------
----AGTTTCGGGTGTACA--ACATAATGATTTGA-TATTTC-TATATATTGAGAAATG---ATCACCACAATGAGTCTC
G-TTAACACCTGTCACCACACATAGC---TACAGAATT-------TTTTTTCTTGTGATGAGAACT--TTTAAGAT----
----TTACTGTAGTTGTTAGT---TTCATA-----GCATTAGCTGATGTCAAGAATTGAACCAATC-TGATAAAAAG-AA
CTG
>Myotis_myotis
ACAATTGCAGTC-CCTTTATTCAAAATATTCTTAGGTTTGGTTCTATTAC----AGCCA---TTTTT-TAGTT-------
GTTAGGC---TTTTTT---TTTTCT----TCCTTATTTTTGGAGATATAATTGACATGCAACATTATATT----------
----AGTTTCAGGTGTA-A--ATATAATGATTTTA-AATTAG-TATATATTGTAAAATG---ATCACCACAATAAATCTA
G-TTAGTACCCA---------------------------------TTTTTTCTTGTGATGAGAACT--TTTAAGAT----
----TTACTGTAG-TGTTAGC---TTTATA-----GCACTAGCTAATGTCAATAATTGAACCAAAC-TGGTACAATG-AA
TTG
>Rousettus_aegyptiacus
ACAACGGCAATA-CCTTTATTCAAAATATTCTTAGATTTGGTTCTATTAC----AACCA---TTTTTGTATTT-------
GTTAGGA---TTTTTTTCCTTCCTT-------ATTTTTTCTGAGATATAATTGCCATACAAGATTATATT----------
----AGTTTCGGATGTATA--ACATAATGATTTTA-TATTAG-TATATACTGTGAAACA---ATTACTACAATAAGTCTA
G-TTAATATCCACCACCAAATATAGT---TACCAAAT--------TTTTATCTTGTGATGAGAACT--TTTAAGAT----
----CTACTGTAGTCATTAGT---TTTATA-----GTACTAGGTGATGTCAAGAACTGAACCAATC-TGATACAAAG-AA
CTG
>Condylura_cristata
GCAATGGCAAGC-TGTACATGCAATACATTCTTAGGTTTAGTTCTACTGC----AACTC---TTTCTGTAGTCCAGTAGA
GTTG-GC-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------GTCACA-----GAATTAACTGATGTCAAAAACTTATCTGATC-TAATACAAGG-AA
TTG
>Solenodon_paradoxus
GCA-----AATC-TCTGTATTCAAAACATTCTCTGGTTGAGTTCTGTTAC----AACCA---TTTTTGTAGTT-------
TCTA-GT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------TTGACA-----GCATTAGCTGATGCCAAGAAGTGAACGGACC-TGATACAAAG-AA
CTG
>Homo_sapiens
GCAATGGTGATCTTTTTTATTAAAAAGAGTCTTAGATTTGGTTCTATTAC----AACCA---ATTTTGTAGTT-------
---A-TT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------TTTATA-----ACATTAGCTGATGTCAAGAATTGAACCCATC-TGATACAAAG-AA
CTG



Dog440_LINE

>L1MA9_3END
---------------------------------------------------------------------------TTTTT
CCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATT---TAAGGTG----TACAACGTGATGTTTTGATAT
ACGTATACATTGTGAAATGATTACCA--------------------CAATCAAGCTAATTAACATAT-------------
-------------------------------------------------------------
>Canis_familiaris
GAACCATGA-GAATAATTACTTGCTTCTCTATTTGTCTTCTAAAATAAACG---TGGAAAATTC--TTTTTC------CC
CCAAGTTTATTGGCATATAATTGACACAT-AACCTCATGTGAGTC---GAAGGTG----TGCAATGTGCTGATTTGATAC
AC--ATATATTGCAAAATGATTATCA--------------------TAAAAAGGTT--------------TGGAAAGTCG
TTTTC---TTGACAAGGTTT-AACATGTGAAAATGATGTCATGCAGAAATAGGGT--GAGA
>Felis_catus
GAACCGTGA-GAACAGCTACTTGTTTCTCTACTTGTCTTCTCAGATAAATG---TGGAAAATTC---TTTTC------CC
CCAGGTTCATTGAGATGTAGTTGCCACAT-AACATTGTGTAAGTC---GAAGTTG----TGCAGCGTGGTGATTTGATAC
AC--GTATATTGCAAA------ACCG--------------------TCATAAGGTT--------------CAGAAAGTCC
TTTCC---TTGACCGATTCT-AACATGTTCAAAGGATGTCGTGCCGAAATAGGACAAGGGA
>Manis_pentadactyla
GATCTGTGA-GAATAA------GTCCGTTTCTCTGTCTTCTAAAAGGCATG---TGGAGAGTGC--TTTCTC------CC
CCAGCTTCACTGAGATATAACTGACATCT-AGGATTGTGTAAGTC---TAAGGTGTATATACAATGTGGTGATTTGATAC
AGGTATATATTGCAAAACGACTACCA--------------------CAATAAGCTT--------------TGAAAAGTT-
GTTTA---TTGACCAATTTT-AACCTGTTAAAATGATATCATGCAAAAATAGGACAAGGGG
>Sus_scrofa
GAACTGTGA-CAAGAAGCCAAAATTTCTCTGTTTGTCTTCTACAACAAGCG---TGCAAAGTTCTTTTGTCC------CC
CTAGCTTTACTGAGATA-AACCCATATGG-GATGCGGTAACAGCTTAGTAAGACG----GACATCGTGATGATTTGATAC
ACGCATATGTTGCAAAGTGATCATCA--------------------CAATAAGGTG--------------TGGAAAGCAG
GTTCA---CTGACCAACTTT-AACTTGTGAAACGGATGTCACACAGAAGTGGGTCAAGGGA
>Tursiops_truncatus
GAACTGAGAGTCAGAACCCATTATTTCTCTGTTTGTT--------CAAATA---TGGAAAGCCT-TTTTCTC------CC
CTAGCTTTATTGAGATATAACTGAGC-------------TAAGTC---TAAGGTA----TACATCATGATGATTTGATAC
ACGTACATACTGTGAAATGATTACCC--------------------CGGTGCCGTG--------------TGGAAAGGTG
TTTTC---TTCACCAATTTT-AACTTGTTAAAATGATGTCATGCAGAAATAGGTCAAAGAA
>Equus_caballus
AAAC--TGA-AAATAGCTACTTGTTTCTCTATTTGTCTTCTA----AAATG---TGGAAAGTTC--TTTTTT------TC
CTAGCTTTATTGAGATGTAATTGACATTT-AACATTGTGTAAGTC---TAAGGTG----TGCCATGTGATGATTTGAAAC
ACACACGTATTGCAAAATGATTACCA--------------------CAATAAGGTT--------------TAGAAAGATC
TTTTC---TTGACCAATTTT-AATATGTTAGAATGATGTCATGCAGAAGGAAGACAAGGGA
>Ceratotherium_simum
GAACCGTGA-GAATAGCTACTTGGTTCTCTATTTGTCTTTTAAAGTAAATG-----GAAAGTTC-TATTTTT------TC
CTAGCTTTATTGAGATATAATTGAAATAT-AACATTGTATAAATC---TAAGGGG----TACAACTTGGTGATTTGATAC
ACGTATATATTGCGAAATGATTACCG--------------------CAATAAAGTT--------------TGGAAAGTTC
TTTTC---TTGACCAATTTT-AACATGTTAAAATGATGTCATGCAAAAATAGGAGAAGGAA
>Myotis_myotis
GAACTTTGAGAATTAATTACTTGTTTCTCTATCGGTCCTCTAAAAGGATTG---TGGAAAGTTC--TTTTTG------CC
CCAGTTTTACTGAGATATAATTGACACAT-AACAT-GTATAAGTC---TAAGGTG----TACCACATGGTGATTTGATAC
ACATGTATATTGCAAA-TGATTACCAGTATATATTACTGTATATTGCAGTAAGGTT--------------TGGAAAGTCC
TTTCC---TTGACCAGTTTG-AACATGTTAAAATTATGTCCTACAGAAATGGGACAAGGGT
>Rousettus_aegyptiacus
GAACGGTGA-GAATTAACTACTTGTTCTCTCTTTGTCCTCTGAAATAAATG---TGGAAAGTTC---TTTCT------CC
CCAGCTTTAGTGAGACGTAATTGCGATAT-TACGTTGTGTGAGTC---TAAGGTA----TACCACGTGACGATCGGATAC
ACGTATAGATTGCAAAATGATTACCA--------------------TAGTAAGGTT--------------TGGAAAG---
--TTC---TTGACGGGTTTT-AACATGTTAAAATGATGTCATGCAAAAGTGGGACAAGGGA
>Condylura_cristata
CAATTCCGT-GAATAGCCAAGTGTGTCTCTATTTGTTTTTTAAAATAAATG---TGGGAAGTTC---TTTTC--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------TTGCCCAATTTT-AACTTGTTGAAATGATGTTGGGCAGAAAT-GCACAAGGGA
>Sorex_araneus
TAACTGTGA-GAATAGCTGATTGTTTCTCTATTTATCTTTGAAACTTAATG---TGGAAATTTC---TGTTC--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------TTGACCAATTTTCAAGACATTGAAAAGATCTCAGCCAGAAATAGGACGAAGGA
>Homo_sapiens
GAACTGTGA-GAATAAC----TGTTTCTCTGTTGATTCATGAAAGTAAATG---TAGAATGTTC----TTTC--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------TTGACTAATTTT-AGCATGTTAAAATGATGTCATGCAGAAACTGGACAAGAGA



Dog441_LINE

>L1_CARN7_3END
-----------------------------------------------------------------TTTTTTTATTTGAGT
ATAATTGACATACAATGTTATATTAGTTTCAGGTGTACAAC-ATAGTGATTCGACATTTGTATACATTGTGAAGTGATCA
CCACAATAAGT---CT-AGTTACCATCTGTCACCATACAANGTTA-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------
>Canis_familiaris
AAAGTAATTAAAACCAAGTCCCTT-TTTATATGGCATGTAAAATTAAAA---CTATTTTTTT------TCAAATTGAGAT
ATAATTGACATATAACGTTATATTTGTTCCAGGTATACAAC-ACAGTTATTCAATATAAGCACACATTATGAAATGATCA
CTATGGTAAGTCTACTTACCTAACAT------CCAT------------CTAG----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------TTTTTT---GATGATAGAAAG---AAGAGAT
GGGACAGAAAGAAAAAAATAAGTGATTTCC
>Felis_catus
AAAGTAATTAAAACCAAGTCCTTT-TAT-TACGGCACTTGAAGTTAAAA---CTAGTCTTTT--------AAGTTGAGAT
ATAATTGACATATAACATTTTATTATTTCCAGGTATACAAC-ATGGTGTTGCAATATAGGTGTATACAGTGAAACGATCA
CCACAATGAGTCCAGTTAACTAACAT------CCAC------------CTAA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------TTTTTT---GATGATAGGAAG---AAACGAT
GGGACAGGAAG-AAAAAATGGGTGATTTCA
>Manis_pentadactyla
AAAGTAATTAAAAGTAAGTTCTTT-TT--TATGGTATTTGAAATTAAAA---CTAGTTTTTA--------AAATTGAGAT
ATAATTGACATAAAACATTATGTTAGTTTCAGGTGCATAAA-ACAATAAT------TATATATATATTTTAAAATGATCA
CCATAATAAGT---CT-AGCAAACAG------CCAT------------CTAG----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------TTTGTG---GATGACAGGAAGGAGAAGAGAT
GGGACTGAAAC-AGAAAATTAGTTGTTTTA
>Sus_scrofa
ACAGTAATTAAAACCAAGTCCTTT-TT--TATGGTATTTGAAATTAAAA---CTAGATTTTT--------TAATTGAGAT
GTAATTGACATAT-----TACATTAGTTTCAGGTGTACAAAGACAATGATTCAACAT--GTCTGAATTGCAAAATGATCA
CCACAATAAGT---CT-AGTTAACAT------TCAT------------CTAGTTTTTT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------TTTTTT---AATGGCAGCAAGGAAAAAAAAT
AGGTCTAGGAC-AAAAAATGGGCCATTTCA
>Tursiops_truncatus
AAAAAAAAAAAAACCAAGTCCTTT-TT---ATGGCATTTGAAATTAAAA---CTCGTTTTTT--------AAATTGAAAT
GTAATTGATATAG-----TACATTAGTTTCAGGTGTACAAC-ACAATGATTCAATATGCGTCTGTACTGTGAAATGATCA
CCACAGGAAGT---CT-CGTTAACAT------CCAT------------CTAG----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------TTTTTT---GATGATAGCAAGGAGAAGAGGT
AGGACTAGAACAAAAAAATCGGTCATTTCA
>Equus_caballus
AAAGTCATAAAAACCAAGTCATTT-TT--TGTGGCATTTGAAATTAAAA---CTACTTTTTA--------AAATTAAGAT
ATAATTGACATATAA---CATATTATTTTCAGGTGTACAAC-ACAATGATTCAATATATGGATATATTGTGAAATGATCA
CCACAATAAGG---CT-AGTTAGCAT------CCAT------------CTAGTCTTTTTTTTTTTTAAAGATTTTATTTT
TTTCCGTTTTCTCCCTAAAGGCCCCCGGTTCATAGTTGTATATTCTTAGTTGTGAGCCCTTTTAGTTGTGGCACGTGGGA
TGTTGCCTCAACATGGCTTGATGAGCAGTGCCATGTCCACTCCCAGGATTCGAACTGGTGAAACCCTGGGCCGCTGCAGC
AGAGTGCGTGAACTCAACCACTCAGCCATGTGGGCCGGCCCCCATCTAGTCTTTT---GATGACAGAAAAGAGAAGAGAT
CAGACAGGAAC-AAAAAATGGGTCATTTTA
>Ceratotherium_simum
AAAGTAATGAAAACCAAGTCATTT-TT--TATGGCATTTGAAATTAAAA---CTACTTTTTA--------AAATTGAGAT
ATAATTGAAA-ATAA---CATATTATTTTCAGGTGTACAAC-ACAATGATTCAATATATGTATCTATTGCAAAATGATCA
CCACAACAGGC---CT-AGTTAACAT------CCAT------------CCAA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------TTTTTT---GATGATAAAAAGGAGAAGAGAT
AGAACTGGAA--AAAAAATGGGTCATTTTA
>Myotis_myotis
AAAGTAACTAAAACCAAGTCC-TT-TT--TATGACATTTGAAATTAAAA---CTAGCTTTTT--------TAATTGAGAT
ATAATGAACA--------TATATTCATTTCAGGTTTAAAAC-ACAATGATTGAATATGTGTATATACTGTGAAATGATCA
CCACAATAAGT---CTCAGCTAACAT------CCAC------------CCAG----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------TTTTTT---GATGATAGGAAGCGGAAGAGAT
GATACTGGAAC-AAAAACTGGGTAATTTCA
>Rousettus_aegyptiacus
GAAGTAATTAAAACCAAGTCCTTT-TT--TATGGCATTTGAAATTAAAA---CCAGTTTTTT--------TTTTTGAGAT
ATAATTGACACATAACATTATATTAGTTTCAGGTGTATGAC-ACAATGATTCAATATGTGTATATATAGCTAAATGATCA
CCAAAATAAGT---CT-AGCTAATAT------CCAC------------C-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------TTTTTT---GATGATGATAAGAAGAAGAGAT
CGGATTGGAACAAAAAAATAGTTCATTTCA
>Condylura_cristata
GAAGCAAGTAAATTCAAATCCTTTCTCTAAATGACATTTGAAAAGAAAA-------------------------------
--------------------------------------------------------------------------------
------------------------------------------------CTGG----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------GATTTT---AATGATAGGTTGTAGGAGAGA-
GGGACTGGAAC-CAGAGATGGATCATTTCA
>Uropsilus_gracilis
AAGACAATGAAAGCCAAGTCCTTTCTCTACATGACATTTGAAATGAAAA-------------------------------
--------------------------------------------------------------------------------
------------------------------------------------TCAG----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------GAAATT---AATAATAGGCAGTAGAAGAGAT
GGGAGTGGAAT-GATAAATGGGTAATTTCA
>Homo_sapiens
AAAGCAACTAAAATCGAGTACTTT-TTTTTATAGCTTTTGAATATAAAA-------------------------------
--------------------------------------------------------------------------------
------------------------------------------------CTGGGGGG------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------GGCACA---GTTGGCAGTTGGAAGAAGACAT
AGGACTGGAAC-AAAGAATGTGTCATTTCA



Dog442_LINE

>L1_CARN7_3END
-------------------------------------------------------------------------TGTATGG
TGACAGATGGTAACTAGACTTATTGTGGTGATCACTTCACAATGTATACAA------ATGTCGAATCAC-----------
------TATGTTGTACACCTGAAACTAATATAACATTGTATGTCAATT---------ATACTCAAATAAAAAAA------
---------------------------------------------------------------------------
>Canis_familiaris
TTGGTTTTT--------CCATTTTTAAA-TGATGGAAGAA--ATTCTGAGCTCATGGGGGC---TCAAAA----------
----AGGGTGTAACTAGATTTATTGTG---ATCATTTTGCAATAGATACAG----------TGACTC-------------
-------AGGTTATATGCCTGAAATTAATGTAACGTTATAGGTCAATT---------ACATC---------------ATA
AT----------TTAAAAAAAA---ATAGGCAGTAGGCTAGATAAGGCCAATGAGCCATGTTTTGCCATCCCATA
>Felis_catus
TTGGTTTTA--------CCTTTTTTAAA-GGCGAGAAAAA---TTCTTAGCTCGTGGGGCT---TCAAAA----------
-----AGGTGTACCTAGATTTATTGTA---GTCATTTTGCAATAGATACAGGGGCGCATTGCAATTTGCATACAGCGCAA
GAGATACATGTTGTACACCTGAAACGAATGTAATGTGCTAGGTCACTT---------ACATC---------------TTC
AT-----------TTTTGAAAA---GCAGGCATCAGGCTAGATAGGGCCAGTGAGTCGTGTTTTGCCATCCTGTG
>Manis_pentadactyla
TTAGTGTTT--------CCATTTTTATA-TAGTTAAAGAA----GATTAGCTCATGGGGAT---TCAAAA----------
-----GGATGTAAT--GGTTTATTGTG---ATCATTTTGCA-TATATACAA------ACATCGAGTC-------------
----------ATGTACACCCGAAAC---------ATGTTGTGTCAATTCTTTTGTCGATTTC---------------TTA
ATTATTATGTCAATTTTTACGA---ATGGATGGCAAGCTAGATTTGGCCAATGAGCCATAGTTGGCCAGCCCCTG
>Sus_scrofa
TTACTTTTT--------CCATTTTAAAG-TGGTTGAAAAA--ATTCTTAGCTTATGGGAGT---TCAAAA----------
----GGGATATAACCCAACTTAGTGTGGTAATCATTTAATAATAAG--CAA------ATAGGAAATC-------------
-------ACAGCGTACACATGAAATTAAC---ATGTTATATGTCAATT---------ATATC---------------TCA
AT-------------AAAAGAA---ACAGGTGGCAGGCTAGATGTGGCCAATGAGCCATGGTTTGCCAAGCCCTG
>Tursiops_truncatus
TTCTTATTT--------TTATTTTAAAA-TGTCTGACAAG--ATTCTTAGCTCATGGGAGT---TCAAAG----------
------GATGTAACTGGATTTATTGTA---ATCATTTCCTAATATG--CAA------ATAGCAAATC-------------
-------ATGTTGTACACGTGAAAC-------ACATTATATGCAGGTT---------ACACC---------------TCA
AT-------------GAAAGAA---ACAGGT---AGGCTAGATTTGGCCAATGAGTCATCATTTGCCAATCCCTG
>Myotis_myotis
TGATTGGTT---TTTTTCATTTTTTACA-TGGTTTAAAAA--TGTCTTAGCTCATGGGAGC---TTAAAA----------
----ATGATGTAACTAGATTTACTGTGGTGATCATTTTGTAATATATACAA------ATCTTAAATC-------------
-------ATGTTGTACACGGGAAGCTAATATAATGTTATGTGTCAATT---------ATATC---------------TAA
AAAAAAAAAACAACAAAAAAAA---ACAGGTGTCAGGCTAGAGTTGAGCAATGA-CCACAATTTGCCAATCCCTG
>Rousettus_aegyptiacus
TTGGTTTTT--------CTATTTTTAAA-TGGTTGAAAAA--AATCTTAGCTCATGGAAGT---TGAAAA----------
----AAGATGTAACTAGATTTATTGTAGTGACCATTTCACAATATGTACAA------ATATCAAATC-------------
-------ATGTTGTACACCTGAAACTAAT-----GTTATATGTCAATC---------ATATC---------------TC-
---------------AAAAAGA---ATAGGTAGCA---------------ATGAGCCATGATTTGTCAATCTCTG
>Condylura_cristata
NNNNNNNNNNNNNNNCATCATTTTAATA------GAAAAATCATTCTTAGCTCAAGGAGGT---TCAAAG----------
-----GAATATGACTAGACTTACTGCAGTC----CTTTGCAGCCCCTAGAA------ATACTGAATC-------------
-------ATCTCATACTCTGGAAAGTCA------AAATTATGTCAATT---------ACTTC---------------TTT
AA-------------AAGAAAA---AAAGCTGGAAGACTGGATTTGGATAACAGGCCCTAGTTTGCCGACCCGTG
>Sorex_araneus
TTGGTTTTT--TTTATACCCTTTTAAAAATGG---GAAATCCATTCTTAGCTCCTGTGAGT---TCATGA----------
----CAAAGCTAATAAGATTTATTGTGGTGCACATTTT-CAGTATATACAA------ATATTTAAAC-------------
-------------GGCCTCTGATGCTAATACAATATTATATGTCAATT---------CTGTA---------------TG-
---------------AAAGAAA------------GGGCTGCTTTTGGTTTGTGGGTCATAGTTTCTCAAGCCCTG
>Equus_caballus
TGATTTTTT---TTCAACCATTTAAAAA-TGG---AAAAACCATTCTCAGTTCACAGGAGT-------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------TC-
------------------AAAA----CAGGCGGCAGGATAGATTGGGCCCATGGGCCATAGTTTGCCAACCCCCG
>Ceratotherium_simum
TGATTTTTT----TCAACCATTTAAAAA-CGG---AAAAACCGTTCTTAGCTTATAGGAGT-------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------TC-
------------------AAAA---CCAGGCAGCAGGCTAGATTTGGCCCGTGGGCCATAGTTTGCCAACCCCTG
>Homo_sapiens
TGCTTTTTTTTTTTCAACCATTTAAATATTGG---AAAAATCATTCTTTGCTCGTGGGAGT-------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------TC-
------------------AAAA---GCAGGCAGCAGGCTAGATCTGGTCAATGGGCCATAGTTTGACAATCCCTG



Dog443_LINE

>L1_CARN7_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------TTTTTTTATTTGAGTATAATTGACATACAATGTTATATTAGTTTCAGGTGTACAAC
ATAGTGATTCGACATTTGTATACATTGTGAAGTGATCACCACAATAAGTCTAGTTACCATCTGTCACCAT----------
------------------------------------------------------------------
>Canis_familiaris
TATACTCAGTCATGTT-AAAAT----------------------------------------------------------
---------------------------------------------------------------TCAGTTAAAATAAATTC
A-------------------------------------------------------------------------------
--------------------------------------------------------AACCAACCTAAAA-----CAATGT
TTTTTCT-TTT------GAAAAAAATTTTA-AGTGAGGTAAAACTGACATACAACATTATATTAGTTTCAGGTGTACAAC
ATGATAATTCAGTATGTGTATATACTGTGAAATGATCACCTTAATAAGTC-----AACATCCC----------AAAGTTC
TTTCTTTTCT---GGGGTGATTGTACTTTTCAGTATCTTGATAGAGGCATGTGTCACATTACTGTA
>Felis_catus
TAAAGTCAGCTGTGTTGAAAAT----------------------------------------------------------
---------------------------------------------------------------TCAGTCAAAATAAACTC
A-------------------------------------------------------------------------------
--------------------------------------------------------AGGCAA------------------
CCTTTCT-TCTG-----AAAAAAACTTTTC-ATTGAGGTAAAACTGATCTATAATGTTATATTAGCTTCGGGTGT---AC
ATGATAATTTGATATTTGTATATACTGAAAAACCACCATCATACTAAGTCTAGTCGACATTCA----------AAAGTTG
TTTCTTTTCT---GGAGTGATTGTATTTTTCTGTATCTTGATAGAGGCACGTGTCACGCTAGTGTA
>Manis_pentadactyla
TATATTCCGTCATGCT-AAAAT----------------------------------------------------------
---------------------------------------------------------------TCAGTTAAAATAAACTG
A-------------------------------------------------------------------------------
--------------------------------------------------------ACCCAACCTTATA---AAAAAGGT
CCCT----TCTT-----AAATTCTTTTTTT-ATTGAAGTATAATTG--ACATAACATTATATTACTTTCAGGTATACAAC
ATAATGATTTGATAAACATATGTATTGTGAAATGATCACCATGATAAGTCTAGATGACAT-CA----------AGAATTA
TTTTCTTTCT---TGGGTGACAGTATTTTTCTGCATCTTGATTGAGGTGTACATTATGCAGGTGTG
>Sus_scrofa
TATATTCATTCATGTT-AAAATTAAATAAAATAAGAGCTCTTTTGTGGCACATCAAGTTAAGGATGCAGTGTTGTTACTA
CAGCAGCTCGGGTCAATGTTGTGGCATGGGTTTAATCCCTGGCCCAGGAACGTCTACATGCCATGAGTTGAAATAAATTC
AGACCTACCCTTTTTTTTTCCCCCACAGCTCATGGAAGTTCCTTGGTCAGGGATTGAAACTGTGCCACAGCAGTAACTAG
AGCCACAATAGTGATAATGCCAGATCCTTAACCTGCTGAGCCACCAGGGAACTCTAAGCCAACCCTTAA------AATTT
CCATTT--ATTT---ATTATTATTATTTTA-ATTGAGATATAATTGACATAGAACCTTACATGAGTTTTAGGTACATAAC
ACAATGATTCAATATTTGTATATGTTGTGAAATGACCACCATAATAAATCTAGTTAACATCCA----------AAAGCTG
TTTCCTTTCT---GGGGTGATACTATTTTTCTTTATTTTGATAAAGGCATGAATCACACAGAAGTA
>Tursiops_truncatus
TATATTCAGTCATGTT-AAAAT----------------------------------------------------------
---------------------------------------------------------------TCAGCTGAAAAAAATTC
A-------------------------------------------------------------------------------
--------------------------------------------------------AGCCAACATAAAA------AATTT
CCTTTC--ATTT-----ATTAATATTTTTA-ATTGAGATATAATTGATATATAAACTTACATTAGTTTCAGGTATA-AAC
ATAATGATTAGATACTTGTATGTATTGTGAAATGATCACCATAGTAAGTCTAATTAACATCCA----------AAGGTTC
TTTCCTTTCT---GGGGTGATAGTGTTTTTCTTTATCTTGATAGAGGCATGTGTCGCACAGGTGCA
>Equus_caballus
TATATTCAGTCATGCC-AAGAT----------------------------------------------------------
---------------------------------------------------------------TCAGTTAAAATAAACTC
A-------------------------------------------------------------------------------
--------------------------------------------------------AGCCAGCCTAAAA------AAAAT
TCTTT---TTTC-------ATTATTATTTT-ATTGAGGTATGAGTG--ATATAACATTATCTTAG-TTCAGGGGTACAAC
ATAATGATTCGATATTTGTATGCATTGTGAAATGATCACCACAATAAGTCTAGTTAACATCCA----------AAAGTTC
TTTCC-TTCT---GGGGTGATAATATTTTTCTGTATCTTGATAGAGGCATGTGTCACACAGGTGTA
>Ceratotherium_simum
TATATTCAGTCACGCT-AAGAT----------------------------------------------------------
---------------------------------------------------------------TCAGTTAAAATAAACTC
A-------------------------------------------------------------------------------
--------------------------------------------------------AGCCAACCTAAAA------AAAGT
TTTTCTT-TTTT-----TAATTATTATTTT-ATTGAGGTATAATTG--ACATAACATTATATTAG-TTCAGGGGTACAAC
ATACTGATTCGATATTTGTATCTACTGCAAAATGATCACCACAATAAGCCTAGTTAACATCCA----------AAAGTTC
TCTCCTTCCT---AGGGTGATAATATTTTTCTGTATCTTGATAGAGGCTTGTGTCACACAGGTGTA
>Myotis_myotis
TATATTAAGTTATGCT-AAAAT----------------------------------------------------------
---------------------------------------------------------------TCAATTAAAATAAACTC
A-------------------------------------------------------------------------------
--------------------------------------------------------AGCCAAACTAAAA------AATTC
CT------TTTT-----ATATTTTTTTTTGTATTAAAGCATAGTTGACAT--GACATTGCTTTATTTTCAGGTGTAAAAT
ATAATGATTTGGTGTTTGTATACTATATTATAAAATGATCACAAGAAGTCTAGTTAATACCCC----------AAAGTT-
CTTCCTTTCT---GTTGTGATAATATTTTTCTGTATATTGATGGAGGTGTGCATCACACAGGTGTA
>Rousettus_aegyptiacus
TATATTCAGTCATACT-AAAAT----------------------------------------------------------
---------------------------------------------------------------TTAATTAAAATAAACTC
A-------------------------------------------------------------------------------
--------------------------------------------------------AGCCAATCTAAAA----GTAAGTT
CC------TTTT-----AAAGTTATTTTTA-ATTGAGGTATAGTTGATATAAAACATCATTTTGGTTTCAGGTATATAAT
ATAATGCTTTGATATTTGTATAGATTATGAAAAGATTACCACAATAAGTCTAGTTAATATCCA----------AAAGTTA
TTTCCCTTAT---GGGGTGATAGTATTTTTCTGTATCTTGATAGAGACATGCATCACATAGGTGTA
>Condylura_cristata
TATAGTCAGTCATGCT-AAAAT----------------------------------------------------------
---------------------------------------------------------------TCATTTAAAAAAAACTT
G-------------------------------------------------------------------------------
--------------------------------------------------------AGCCAAGCTAAAA-----CAAAGA
TCATTCTTTTCT--------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------GTGGTGATAGTAATTTTCTGCATTTTGATAGGTGCATGCATCACACAGGTGTA
>Solenodon_paradoxus
TACATTCAGTCACGCT-ACAAT----------------------------------------------------------
---------------------------------------------------------------TTAGTTAAAATAAATTC
A-------------------------------------------------------------------------------
--------------------------------------------------------AGCCAACCTAAAA-----AAA---
--GTTCTTTTCT--------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------AGCGTGAGAGTATTTTTCTGTATCTTGACTGACG---------------TGTG
>Homo_sapiens
TATATTCAGTCATGCT-ACATG----------------------------------------------------------
---------------------------------------------------------------TCAGTTAAAGGAAACTC
A-------------------------------------------------------------------------------
--------------------------------------------------------AGCCAACCTAAAA------AATGT
TCCCTCCTGTCT--------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------GGGCCAAGGCTATTTTTTTGTATCTTAAGAGAGGCATGTGTCACACAGGTATA



Dog444_LINE

>L1_CARN7_3END
--------------------------------------------------------------------------------
---TTTTTTTATTTGAG-TATAATTGACATACAATGTTATATTAGTTTCAGGTGTACAACATAGTGATTCGACATTTGTA
TACATTGTGAAGT-------------------------------------------------------------------
-----------------
>Canis_familiaris
CCTAAACCATTCCTTC-----ACTATAAAGA-----GGGAAACTGAGAACCATAAAGCTT---C-ATATAACTGATATTT
--------TTATTTGAAATATAATTAACATATAACACTATATTATTTTCAGTTGTACAACATAACAATTCAATATCAATA
CAA-------------CATAGGACTGATTTTT---ATAAGA----TTCTTGCCTTATTTTGATTTTACTTTG--------
CAAGTCTTTTCAAAGAC
>Felis_catus
CCTAAACCATTCCTTT-----ACCATAAAGACAGGAGGCAAACTGAGAACCAAAAAGCTT---C-ATAGGAGTGTTATTT
-----------TTGGAAATATAATGGACGTGTAACATTATGTCACGTTCATGTGTAAAATATAATGACTACATATTTGTA
TAA-------------CATAGGACTGCTTTTT---CTAAGG----TT-TTGCCTA-TTTTT-TTTAATCTAC--------
CAAGTGTTTTCAAAGAC
>Manis_pentadactyla
CCTAAACAATTCATTT-----ACTATGAAG----ACGAGAAACTGAGAACCACAAAGCCT---C-ATATGACTGATTTTT
-------------TCGGAGATAATTGGCAT---ACATTATATTAGTTTCAGCTGTACAGCATAATGACTCGTTATATATA
CAA-------------TATATGACTGAATTTT---ATAAGG----CCATCGCCTTGTTTTG-TTTTACCTGC--------
TGAGTAGTTTCGAAGAC
>Sus_scrofa
CCTAAACCATTCCTTT-----ACTATGAAGG--GGAGGGAAATTGAGAAACCAAAAGCCT---C-ACATAACTAATTTTT
-------ACAAATTGAGATATAACTGACATATAACACCCTATTAGTTTCAAGCATACAACATAATGCTTCATTGTTTGCC
TAA-------------CATATCATTGCCTTTT---ATAAGG----CTACTATCTTATTTTG-TTTTACCTGC--------
CTACTGTCTTTAAAGGC
>Bos_taurus
GCTTAACTATTTTTCT-----ACTACGAAGA--GGAGGGAAATTGAAAACCCCAAAGCCC---TTATAAAACTGATTTTT
-------ATAAATTGAGATGTAATTGACAT-----ATTACATTAGTTTCAAGTATACAACATAAAGCTTCAATGTTTGCA
CAA-------------CATATTCTTGATTTTT---ATAAGGCTACTTACTGTCTTATTTTG-TTTTACCTGC--------
TATGTGTTTTCAAAGGC
>Equus_caballus
CCTAAACCATTCCTTT-----ACTATGACGT--GGAGGGGAATCGAGAAGCAAAAGGCTT---C---ATGACTGATTTTT
--------TAAATTGAGACATAATTGACATATAACATTATATTAGTTTCAGGCATATAACGTAATGATTCAATATTTGTA
TGA-------------CATATGAATGATTTTT---ATAAGG----CCATTGCTTTATTTTG-TTTTACCTGC--------
CACGTGTTTTCAAATGC
>Ceratotherium_simum
CCTAAACCATTCCTT------ACTATGAAGA--GGAAGGAAATTGAGAACCAAAAAGCTT---C-ATATGACTGGTTTTT
--------TACATTGCGATATAATTGACATACAACATTATATTAGTTTCAGGTGTACAACATAATGATTTGATATTTGTA
TAA-------------GATACGACTGATTTTT---CTAAGG----CCATTGCTTGATTTTG-TTTTACCTAC--------
CAAGTGTTTTCAAAGGC
>Myotis_myotis
TCCAAACCATTTCATT-----ACTATGAAGA--TGAAGGAAATTAAGAACAAAAATGCCT---C-ATATGATGATATTTT
----------AATTGAGATGTAATTGACATATAGC---ATATTAGTTTCACGTATACGACATAATGATTCAATATTTGTA
TAA-------------TATATGGCTGATTTTG---ATAAGG----TCATTGCC---TTTTG-TTTTGCCTGA--------
----------CAAAGGC
>Rousettus_aegyptiacus
CCTAAACCATTCCATT-----ACTATGAAGA--TAAAGAAAATTGAGAACCAAAAAACCT---C---GTGACTGATTTTT
--------TAAATTGAGATATAACTGAAATATAGCATTAAATTAGTTTCAGGTGTACAAC--AATGATTCAAATTTTGTA
TAA-------------TATACGCCTGATTTTT---AAAAGG----CCATTGCCATATTTTG-TTTTACCTGC--------
CAAGGGTTTTCAAAGGC
>Condylura_cristata
CCTAGACCAGTCTTTT-----ACTTTGAAGA--GCAGAGAAATTGAGAGCTAAAA-GCCT--------------------
--------------------------------------------------------------------------------
----------------CATATGACTGATTTTT---ATGAG-----CCGTTGCCTTATTTTG-TTTTATGTGC--------
CAAGTGTTTTCAAAGGC
>Sorex_araneus
CTTATATCGATCATTTAGGACACTATAAAGG--AGAGGGACACTGAGAAACAAAAAGCCT--------------------
--------------------------------------------------------------------------------
----------------CACATGAGTGATTTTT---ATGAG-----TTATTATCTTATTTTG-TTTTACTTGC--------
CAAATGTTTGTGACAGC
>Homo_sapiens
CCTACATAGTCCCTTT-----ACTGTGAAGC--AGTGGAAAACCGAGAACCAAAA-CCCT--------------------
--------------------------------------------------------------------------------
----------------CAGATGACTGATTTTT---ATAAGGG---CCATTGCCATATTCTG-TTTTACCTGCTGAGTGTT
TGAGTGTTTTCAAAGGC



Dog445_LINE

>L1_CARN7_3END
--------------------------------------------------------------------------------
--------------------------------------------------TTTTTTTATTTGAGTATAATTGACATACAA
TGTT---------------------ATATTAGTTTCAGGTGTACAACATAGTGATTCGACATTTGTATACATTG--TGAA
GTGATCACCACAATAAGTCTAGTTACCATCTGTCACCATACAANGTTANTACAATATTATTGACTATATTCNCCATGCTG
TACATTACATCCCCATGACTTATTTATTTTATAACTGGAAGTTTGTACCTCTTGACCCCCTTCACC--------------
----------------------------------------------------------------
>Canis_familiaris
GACCAGTTTTGCTAGAGAAC-----AGGAGTTT-TAATATCCTTGATGAAAAATA---ACAGTATACA------------
------------------------------------------TTTTT---------CATTGAGGTATAATTGACCTATAA
CATT---------------------ATGTTAGTTTTATGTGTACCACATAGTGATTCAATATTTGTATGTATTG--CAAA
ATGATCACCATAATGAGTCTATTTAACATCTATCACCAAATATAGTTACA------------------------------
-------------------TTCTTTCTCTTGTGATAAGAACTTT-AAGGTCT-----ACTCTC------AAAG--TGTAA
TTTTT---GAT-----TTACATTATTTTCATAAAATATTATTCTGCTTTCTAATTATT-TCTCT
>Felis_catus
GACCAATTTTTATAGCATAC-----TGTAGT---TAATGTCCTTGATAAGAAATA---ACAGTGTAAA------------
------------------------------------------GTTTT---------TATCAAGGTGTAACTAACATATAA
CATT---------------------ATCTTAGTTTTAGGAGTACCACATAATGATCTGATATTTGTATGTGTTG--CAAA
ATGATCACCATAATAAATCCAGTTAATGTATTTCACCAAGCATAGTTAAA------------------------------
-------------------TTCTTTTTCTTGTGATGAGAACTTT-AAGAT---------TCTT------AAAG--TATAA
TTTTT---GGT-----TTACATTATTTTCATAGAATATTACTCTGCTTTCTAATTCTT-TCTCT
>Phataginus_tricuspis
GACCAATTTTTATAGAGTAC-----TGTAATTATTAGTGTCCTTGATAA-ACACA---ACAGTATAAT------------
------------------------------------------TCTTT---------TATTGAGGTATAATTGATGAATAA
CAATATTAGTTTCAGATGTATAACAATATTAGTTTCAGATGTATAACATAATGATTCAGTATTTACATATATTT--TTAA
ATGATCACCACTATAGGTCTAGTTAACATCTGTTACCAAACATAAATAAA------------------------------
---------------AATTTTTTGTTTTCTGTAATGAGGACTTT-TAAGTTC---TCTCTCTT------ACAG--TATAA
TTTTT---AAT-----TTACATTATTTTCATAAACTCTTACTCTA-----TAATAATTAGTTCT
>Sus_scrofa
AACTAATTTGTAGAGAATGC-----TCTCATGAATTATGTCCTTGATAA-ACATA---ACAGTGTAG-------------
------------------------------------------CCTTT---------TATTGGTCTATAAGTGACATATAA
CATT---------------------ATGTTAGTTGCATGTTTACGATATAATGATTTGATATTTGTGTATGTTG--CGAA
ATGTTCACCACAGAAAGTGTAGTTAACATCCATCACCAAACATACTTACAAA----------------------------
-----------------AGCATTTTTCCTTGTGATAAGGACTTTTAAGATAC---TCTGTTTT------ACAG--TATAA
TTTTT---AGTTTATGTTACATTATTGTCATAAACTGTTAATCTACTTTCTAATTATGATTTCT
>Bos_taurus
GCCCAGTTTGTAGAGTGTGC-----CACCGTTAATAATGTCCTTGAAAA-ACATA---AGAGTGTAA-------------
------------------------------------------TTTTT---------TATTGAGATATAATTGACATATAA
CATT---------------------ATGTTAGTTTCAGGTGTACAATA---TGATTCAGTATTTGTATATATTG--TGAA
GTGTTCACCATGGTAAGTCTAGTTATCATCTGTCACCAAGCATAATCTTT------------------------------
-------------------TTTTTTTTCTAGTGATAAGGGCTTTTAAGATCT---CGTGTCTT------ACAG--TATAA
TTTTT---AGT-----TTACATTGTCTTTATTAACCGTTACTCTGCCTTCTATTTATTATTTCT
>Equus_caballus
GACTAATTTTTACAGAGTAC-----TGTAGTTAGTAATATCCTTGATAA-ACATA---ACAGTATAAT------------
------------------------------------------TTTTC---------TATTGAGGTATAAATGACATATAA
TAT-----------------------TGTTAGTTTCAGGTGTACAACATAATGATTCAATATTTGTATATATTG--CAGA
ATGATCACCACAAT--GTCTAGTTAACAT-TGTCACCAAACATAGTTACAA-----------------------------
-----------------ATTTTTTTTTCTTGTGATGAGGACTTTTAAGATAT---ACTCTCTT------ACAG--TATAA
TTTTT---AGT-----TTATATTGTTTTCATAAAATATTACTCT--------ACTATTATTTCC
>Ceratotherium_simum
GACTGATTTTTATAGAGTAC-----TGTAGTTAATAATAGCCTTGATAA-ACATA---GCAGTATAATGTTTGTT-----
------------------------------------------GTTTT---------TATTGAGGTATAATTGACATATAA
CAT-----------------------TGTTAGTTTCAGGTGTACAACATAATGGTTTGATATTTGTATATATTG--CAAA
ATGATCACCACAGTAAGTCTAGTTAGCATCTGTCACCAAACACAGTTACAA-----------------------------
-----------------AATTTTTTTTCTTGTCATGAGGACTTTAGAGATCT---GCTCTCTT------ACAT--TATAA
TTTTT---AGT-----TTACATTTTTTTCATAAACTATTACTCTATTCTCTAATTATTGTTTCT
>Myotis_myotis
GACTAATTTTTATGGAGTAC-----TCTAGT---TAATGTCTTTGGTGA-ACATA---ACGGTATA--------------
------------------------------------------TTTTT---------TGTTGAGGTAGCATTCACATAAAA
TA------------------------TGTTAATTTCCTGTGTACAACATAATGATTCGATATTTATATTTATTGAAAAAA
ATGATTGCCACAATAAGTCTAGTTAACATTTGTCACCAAACATAGTTACAA-----------------------------
-------------------ATATTTTTCTTATGATGAGGACTTTTAAGGTCT----ACCTCTT------ACAGTTTTTAA
TTTTT---AGT-----TTA-ATTATTCTCTTAAACTATTACACTACTTTCTAATTA---TTCCT
>Rousettus_aegyptiacus
GACTAATTGTTATAGAGTAC-----CTTAGT---TTATGTCTTTGATGA-ACATA---ACAGTATAATCAGTATAATTTT
TAAGTATTTTGTTTTATTTTATTAGTTTCAACAACAATATAATTTTT---------TATTGAGGTATAATTGACATAAAA
TATT---------------------ATGTTAGTTTCAGGTGTACAGCATAATAATTTGATATTTGTATATGTCA--CAAA
ATGATCACCACAGTAAGTCTAATTAACATCTGTCACCAAACA--GTTACA------------------------------
-----------------ATTTTTTTCTCTTGTGATAAGTACTTTTAAAATCT------TTCTC------ACAA--TATAA
TTTTT---AGT-----TTACATTATTTTAATAAGTGATTACTCTGCTTTCTAATTACCACTTTT
>Condylura_cristata
GGCTAATTTTTACAAAATAT-----TTCAGTTAATATTGC-CTTGATAA-ATATG---GTA-TAGAA-------------
------------------------------------------CATTT---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------AGC-----TTATGTTATTTTCATAAACTATTACTGCACTTTCTAATTCTTTTTTTT
>Erinaceus_europaeus
GACTAATTT-TATACTGTAC-----AGTGCCTAGCAATGTTCTTGATAA-ACATG---ACAATATAT-------------
------------------------------------------TTTTT---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------AGT-----TTATGCTACTTTCATAAACTATTAATCT---TTCTAATTA---TTTCT
>Homo_sapiens
GACAAATTTTTATAGGGTTCTGCTTTGTAGTTAATAATTTCCTTGATAA-ATATA---ATATTGCAA-------------
------------------------------------------GTTTT---------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------AGT-----TTACATT---TTCATAAAC---TATTCTATTTTCTAATTAT--TTTTA



Dog447_LINE

>L1_CARN7_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------ATTGTANTAACNTTGTATG-GTGACAGATGG----
--------TAACTAGACTTATTGTGGTGATCACTTCACA--ATGTATACAAAT-GTCGA-------ATCACTATGTTGTA
CACCTGAAA----------------------------------------------------------------------C
TAATATAA-------CATTGTA---------------------TGTCAATTATACTCAAATAAAAAAA------------
---------------------------------------------------------------------------
>Canis_familiaris
TTAGGATATAA----TGTCTTGATCTGTGATTCTTAGCTCCTGGCACTAATT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------A
ATAATATTTGCTTCTGATATT------AAAATAAATCTA-AA-------------CTATG--TG-GTAACACATGTTACC
TTATTGTGTAGTTAGACTTATTGTGGTGATCATTTTGAA--ATATATACAAAT-ACATA-------ATCATTATGTTGTA
CACCTGTAA----------------------------------------------------------------------C
TAATACAC-------TGTTGTA---------------------TGTCAATTATACTTCAATTA----------------A
AAATAAATAAATCTAGA---AATAGTTTCATTGAGTTTAATAAAAATTAAT----TTCCTTTATCTCAGAC-TTT
>Felis_catus
TTAGGATATAA-TGACGTCTTGATCTGTGATTCTTTGCATTTGGCACTAACT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------A
ATAATATTTACTTCTGATATT------AAAATAAATCTC-AA-------------CTATGTATG-GTAACACATGT----
--------TAGCTAGACTTATTATGGTGATAATTTTACA--ATATTTACAAAT-TTTGA-------ATAATTATGTTGTA
TACCCGATA----------------------------------------------------------------------C
TAATACAA-------TGTTGTA---------------------TGCCAGTTATACTTCAATT-----------------A
AAATAAATAAATCTAGC---AATAATTTCATTGAATCTAAT-AAAATTAAT----TTCCTTTATCTCAGAC-TTT
>Manis_pentadactyla
TTAGGTTATAAATGTCGTCTTGATCTGTGATTCTTTGCTTCTGGCACTAATT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------A
ATAATGTTTACTTCTGATATT------AAAATAAATCTA-AG-------------CTATGTATA-GTAAGGGGTGG----
--------TAATTACACTCATGACAG--ATCATTTTGCA--ATATGTACAAA---------------------TATTGTA
CACTTGAAA----------------------------------------------------------------------C
TAATA-------------TGTA---------------------T---AATTATACTTCAGTTTCGAAAT----------A
TATAAAATAAATAAAGC---AATAATTTCATTGAGTCTAATACAGATTAAT----TCCCCTTATCTCAGAC-TTT
>Sus_scrofa
ATTGGGCAT---------CTTGATCCATGATTCTTAGCTTCTGACAATAATTAATAGTATTTAATTCTGGAGTTCCCATC
GCGATTCAGCAGAAACAAATTGGACTAGGAACCATGAGGTTGTAGGTTTAATCCCTGGCCTCACTTAGTGGGTTAAGGAT
CCGATGTTGCCAGTGAGCTGTGGTGTAGGTTGCAGATGCGGCTCTGATCTGATGTTGCTGTGGCTGTGGCATAGGCTGGC
AGCTGTAGCTCTAGTTGGACCCCTAGCCTGGGAACCGCCATATGCTGCAGGTGTGGCCATAAAAAGCCAAAAAAAATTAA
ATAATATTTACTTCTGATATT-------AAATAAATCTA-AA-------------C--TGTATG-GTGATGGATAT----
--------TGACTAGACTTATTGTGATAATCATTTCACA--ATATACTAAAGT-ATTTATCAA---ATCCTTATGTTGTA
CACCTGACAACATGTGTTATTTATCAATTATACCTCAATTTAAAAAAATCAAATAAATCTAGTGATAATTTCACTGAGTC
TAATAAAAATCCTTATGTTGTACACCTGACAACATGTGTTATTTATCAATTATACCTCAATTACCTCAATTTAAAA---A
AATCAAATAAATCTAGT---GATAATTTCACTGAGTCTAATAAAAATTAAT----TCACCTTATAGCAGAC-TTT
>Bos_taurus
TTACTATATAAATGCCAGCTTGATCTGTGATTCTTAGGTTCTGATAAAAATT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------A
ATAATATTTACTTCTGGTGTT-----------AAATCTA-AA-------------CTATATATA-GTAATGGATGT----
--------TGACTAGACTTAGCTTGATGATCATTTCACA--ATGCATACAAAT-ATCAATCAAATCATCATTATAATATA
TACTTTAAA----------------------------------------------------------------------C
TAAACTAAACTAAACTAAAACA---------------------TGTCAATTATACCTCAATTAA---------------A
AATAAAATAAAT-TAGC---AGTAGTTTTACTGAGTCTAATAAAAATTAAT----TCCCCTTATCTCAGAC-TTT
>Equus_caballus
TTAGGATATAAATGGCATCCTGATCTGTGATTCTTAGCTTCTGGCACTAATT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------A
ATAATATTTACTTCTGATATT------AAAATAACTCTA-AA-------------CTATGTATG-GTGACGGATGT----
--------TAAGTAGACTTATTGTGGTGATCATTTCATA--TTGTATACAAAT-ATCGA----------ATTATGTTGTA
CACCTGAAA----------------------------------------------------------------------C
TAATATAA----------TCTA---------------------TGTCAATTATACCTCAATTAAGAAAAT---------A
AAGTAAATAAATCTAAC---AATAAATTCATTGAGCCTAATAAAAATTAAT----TCCCTCTGTCTCAGAC-TTT
>Ceratotherium_simum
TTAGGATATAAATGGCATCTTGATGTGTAATTCTTGGCTTCTGACACT--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------A
ATAATATTTACTTCTGATATT------AAAATAAATCTA-AA-------------CTATGTATG-ATGATAGATGT----
--------TAACTAGACTTATTGTGGTGATCATTTCACG--ATATATACAAATAATCAA-------ATCATTATGTTGTG
CACCTGAAA----------------------------------------------------------------------C
TAATATAA----------TGTA---------------------TGTCAATTACACTTAAAAAT----------------A
AACAAAATAAATCTAGC---AATAATTTCATTGAGTCTAATAAAAATTAAT----TCCCTCTATCTCAGAC-TTT
>Myotis_myotis
TTAGA----------------------------------------ACTAATT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------A
ATAATAT----TTCTGATATT-------AAAGGTATCTA-AA-------------CTATATATG-GTGAC----------
-------------AGACTTACTGTGGTGTTCATTTTGCA--ATAAATACAAAT-ATCAA-------------ATTTTGTA
CAGATATGA----------------------------------------------------------------------C
TAATA-------------TGTA---------------------TGCCAATTATACTTCAATTAAAAT------------A
GATAAAATAAATCTAGG---AATAATTTCATTAAGTCTAACAAAAATGAAT----TCCCCTTACTTCACAC-TTT
>Rousettus_aegyptiacus
TTAGAGTATAAATTGTTTCTTAATCTGTGGTTATTAGCTTCTGGCACTAATT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------A
ATAATATTTATTTCAGATATT------AAAATAGCTCTA-TA-------------CTATGTATGCCTGAC----------
--------TAAATAGACTT---GTGGTAATCATTTTGCAGTATATATGCAAAT-GTTGA-------ATCACTGTTTTGTA
TACGTGAAA----------------------------------------------------------------------C
TAATATAA-------TGTTGTA---------------------TGTCAATTATACCTCAATTAAA--------------A
AATAAAATAAATCTAGC---AATAATTTCATTGAATCTAATAAAATTTAAT----ACCCTTCACTTCATAC-TTT
>Condylura_cristata
AGAATATATAAGTGACATCTTGAT-TGTGATTCCTACTTTCTAGCATTA-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------A
ATAATATTTACTTCTGATGGT---AGTAAAATAAATATA-GT--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------GATAATTATATTGA--CTAAT-ACGATTAAT----TCTTCTTTTCTCAGAC-TTT
>Sorex_araneus
TTAGGATATAAATTTCATCTTTATTTGTGATTCTTAGCTACTGGCATTA-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------A
ATGATATTTACTTTGG---GT------AAAATACAAGCATGA--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------AATAATTTTGCTAAATCTAAT-AAAGTGAAT----TTCATAAGCCTCAGCTATTT
>Homo_sapiens
TTAGGATATTAGTGGCATCTTTCTCTGTGATTCTTAGCTTCCGGTATTAATT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------A
ATACTATTTATTTCTAATATT------CAAATAAATCTA-GC--------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------AATCATTTCATTAAGTCTAATAAAAATTAATGACCCTCCTTGCTTGCAGAC-TTT



Dog448_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------AACTCAT-------------AGAAGCAGAGAGTAGAATGGTGGTTGCCAGGGGCTG
GGGGGTGGGGGAAATGGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGATCTA
ATGTACAGCATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCT
CACCACACACAAAAAAATG-GTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATT-GTGGTAATCATTTCACAAT
GTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTG
GAAAAA--------------------------------------------------------------------------
---
>Canis_familiaris
CAACTTGCATGTTCT---CTAGAGTTCAA-TA--CTTTTTTACAGA-TTTTAAATGT---AAAATTTATACATGATGA--
-GTTGAACTCTCTTAGATTCCACGTATAAGTGGTATCATACTGTATTTGTCTTTCTCTGTCTGGCTTATCTCCCTTAGCA
TAATGCCCTCAAGATCCATCCAAGAACTCAT-------------AAAAACAGAGAACAGAATGGCGCTAACCAGGGCCTG
AGAGGCCAGAGAATAGGAGAAATGTT---T-AAGGGTATAAACTTGCAACTAG--TAGATAAGTAAGTTCTGAAGATCTA
ATGTGCAGTATAGTCATTATAGACAACGGTATTGTATTATAATCTTCAAGCTTGCTAATAG---AGATCT----TATTCC
CACCAC-AAAAAAGAAATG-ATAATTATGTGACATCGTAAAGGTGTTAACTAATGCTACA-ATGGCAATCATATTGTCAT
ATATAAATGTATCAAATCAACA--TTGTACACCTTAAATTTATGCAA-TGTTATATGTAAG-TATATTTCAATA------
---------AAAAATTATACATGATGA---AATGCACAAATTTGAA-TATACATTTACTG-AGATTTGAC-AAATGCAAT
CAT
>Felis_catus
CAACTTGCATATTAT---CTGGAGTTCAA-TA---TTTTTTACAGATTTTTAAATAT---AACATTTATACATGATGA--
-GTTGGACTCTTTTAGATTCCACATATAAGTGGTATCATACCATATTTGTCTTTCTCTGTCTGACATATCTCACTTAGCA
TAATGCCCTCGAGGTCCATCCACGAACTCAT-------------AAAAACAGAGAACAGAATGGTGGTCACCAGGGCCTG
AGAGGTCAGAGAACAGCAGGGATGTT---T-AAGGGCATAAACTTGCAACTAG--TAGATAAATAATTCCTGAAGATATA
ATGTACAGTAGAGTCATTACAGACAACAATATTGTATTAGAATCATCAACCTTGCTAATAG---AGATCTTAATTATCTC
CACCAC-AAAAAAGAAATG-ATAATGATGTGACGTCATAAAGGTGTTAACTAATGCGACA-ATGGCAATCATACTGTAAT
--ATAAATGGATCAAATCAACAGGCTGTACACCTTAAACTTACACAA-TGTTGTATGTAAA-TAGATTTCAATA------
---------AAAAATGATGCATGATGA---AATGCACAAATTTTAAGTGTACATTTGCTG-AGATTTGCC-AAATGTAAT
CTC
>Manis_pentadactyla
CAACTTGCATATTATTATCTAGAGTTCAA-TC---GTTTTTACAGA-TTTTCAATGT---AAAATGTATGAATAATGA--
-GTTAGACATTTTAAAATTCCACATACAAGTGATATCATACAGTATTTGTCTACC----TTTGACTTAGATCACTTAGCA
TAATGTCCTCAAGGTCTATGCATGAACTCCT-------------AAAAACAGAGAGTAGAATAG--GTTACCAGGGGCTG
AAGGGATGGGACATAG-ATAGGTGTTGCTT-AAGGGTGCAGACTTACAACTAG--TAGATAAGTAAGTCCTGGAGATCTA
ATG------------ACTATAGACAATAACAGTGTATTACAAACCTCAAACTTGCTTAGAGAGTAGATCTTGATTATTCC
CACCACAAAAAAAGAAATGTATAGTTATGTGATCTGACAGAGGTGTGAGCTAATGCTACA-ATGGTAACCATTTCACAAT
ATACAAATTTTTCAGATCATCATGTTATACACCTTAAAC------AA-TGTTATATGTAAA-TATATTTCAATAA-----
---------AAAAATTATACATGATGC---AATGCACCAATTTTAAGTGTATATTTGCTG-AGCTTTGAC-AAATGCAAT
CAC
>Sus_scrofa
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNATACTGA--
-GTTTAACTTTTTTAGATTCCACATATGAATAAGATCATATAGTATTTGTCTTTCTCTGTTTGACTTA---------GCA
TAATATCCTTAAGGTCCATCCAGGAACTCAT-------------AAAAACAAAGAGTAGAGTGGTGGTTATCAGAGGGTG
AGAGG-AGGAGGATAGGGGAGATATT---T-AAGGTTACAAACTTGCAACTAA--CAGAT----AAGTCTTGGAAATCTA
ATGCATGATA---TTATTATAAATAATA--AATATA-AATAAATATCAAACTTGCTAAGGCAGTAAGTCTTAGTTACTTC
CATCAC-AAAAAAGAA----ATAATTATGTGT-----TAGAGGTATTAGCTAACACTACAAATGGCAATTGTATTGC-AT
ATATAAATGTATCAAATCAACATGTTGTACACCTT-AACTTATACAC-TGTTATATGTAAA-TATATTTTAATT------
---------AAAAATTATACACAATGA---AATGGACAAATTTTAAGTGTACATTTGCTG-AAATTTGAC-AAATGCAAT
AAT
>Bos_taurus
TAAATTTTATATTATTATCTAGAGTTCAA-TA--AGTTCTTATAGA-TTTTTAATGT---AAAATTTATACACAATGA--
-GTTTGAGTTTTTTAGATTCCACATATGAGTGATATCCTACAGTATTT------CTTTCTCTGATTTATCTCACA--GCA
TAAGATCCTTGAGGTCCGTACATGAACTGGT-------------AAAAACAAAGAGCAGAGTATTGGTTACCAAGGGCTG
ATAAGTGGGGA---TGGGGGGATGTT---T-AAGGCTACAAACTTGCAACTAG--CAGAGAAACAAGTCTTGGAGATCTA
GTGCACAGTATTGT---TATAGACAATAATAATGTA-AAAAAAAATAAAAGATGCTAAGGTGGTAGATCTTAATTATTCC
CAATAC--AAAAAGTAAGA-ATAATTATGTGA-----TAGAGATGTTAGCTAATACTACAGATGACAATGGTATTGCAAT
ATAAAAAT--ATCAATTCAATATGGTGTACAC---AAACTTATACAC-TGTTATAAGTAAA-TATATTTCAATTT-----
---------AAAAACTATACACAATTA---AATGCACAAATTTGCAGTGTAACTTTTCTG-TGACCTAAC-AAATGCAAT
CAC
>Equus_caballus
CAACTTGCATATTATTATCTAGAGTTCAA-CGTTTTTTTTTACAGA-TTATTAATGT---CAAATTTATACACGAAGA--
-GTTCGTGTTTTTTAGATTCTACATATAAGCGAGATCCTACAGTATTTGTCTTTCCCTGTCTGACTTATCTCGCTTAGCA
TAATGTCCTCAAGGTCCATCCATAAACTTGTAGAAACACAGTGAAAACACAGAGGGTAGAGTGGTGGTTGCCACGGGCTG
GAGGATGTGGAAATAAGGTCGATGTTGTCT-AAGGGCACAAACTTGCAACCAG--AAGCT-AATAAGTCCTGGAGATTTA
CTGAACAGCATAGTGATTATGGACAACAATGCTGCATCATAAACTTCAAACTTGCTAAGAGACTAGATCTTAATTATTCC
CACCAC-AGAAAAGAAATA-ATAATTATGTGACTTGATAAAGGTGTTAGCTAGCACTACA-ATGGCAATCATATTGCCAT
GGATAAATGTATCAAATCAACATGTTGTACACCTTAAACTTACATAA-TGTTATATGTAAA-TATATTTCAAT-------
---------AAAAATTATACATGATGG---AATGCACACATTTTAAGTGTACATTTGCTG-AGATTTGTC-AAATACAAT
CAC
>Ceratotherium_simum
CAACTTGTGTATTATTATCTAGAGTTCAA-TATTTTTTTTTACAGA-TTATTAATGT---AAAATTGATACATGATGA--
-GTCCGGCTTTTTTAGCTTCCACATATAAGTGATATCATACAATATTTGTCTTTCTCTGTCTGACTCATCTCACTTAGCA
TAATGTCCTCAAGGTCCATCCATGAACTTGT-------------AAAAACAGAGAGTAGAATGGTGGTTGCCATGGGCTG
GCAGGTTGGGGAATAGGAGAGATGTTGTTT-AAGGGCACAAACTTGCAACAAG--AAGATAAATAAGTTGTGGAGATTTA
ATGCACAGCATAGTGATTATGGACAACAATACTGCATTATAAACTCCAAACTTGCTAAGAGGCTACATCTTAATTATTCC
CACCAT-AGAAAAGAAATG-ATAATT---TG---------------TAGCTAACACTACA-GTTGCAATCATATTGCCAT
ATATAAATGTATCATATCAACA---TGTACACCTCAAACTTACAAAA-TGTTACATGTACA-TATATTTCAAT-------
---------AAAAATTATACATGAGGA---AATGCACAAATTTTAAGTGTACATTTGCTG-AGATTTGAC-AAATACAAT
CAC
>Myotis_myotis
CAACTTGCATATTATTATCTAGAGTTTAA-TA----TTTTTATAGA-TTTTTAATAT---AGAATTTATACATGAAAA--
-GTGTAGCTTTTTTAGATTTCACATATAAGTGATATCATATAGTATTTGTCTTTCTCTTTCTAATTTATCTCACTTAGCA
TAATGTCCTCAAGGTCCATTCATGAATTTGT-------------AAAAACAGACAGTAGAATGG---TTACTGGGGCTCA
G--GGTCAGGGAATAAGAGAGACGTT---T-AAGGGTACAAACTTGCAACTAG--TAGATAATTAAGTCCTGGAGATCTG
ATGTACAGAACAGTGAATACAGACAACAATATTGTATTATAGACATCAAACTTATTAAGAGACTACATCTTAATTATTCT
CATCAC-AAAAAAAGAA---ATAATTCTGTGAAATAACTGAGGTGTTAGCTAACAATACA-ATGGCAATCACATTGGAAT
ATGTAAATGTGTCAAATCAGTGTGTTGTACACCTTAAACTTAGACAA-CATTATATGTAAA-TATATTTCAAT-------
---------CAAAATTATTCAGGATGA---AATGCACAAATGTTAAATGTACATTTACTG-ATATTTGACAAAAAACAAT
AAT
>Rousettus_aegyptiacus
AAACTTGCATATTATTATCTAGAGTTTAA-TA----TTTTAATAGA--TTTTAAAGT---AGAATTTATACATGATAA--
-GTTTGGCTTTTTTAGATTCCATATATAAGTGATATCATAT-ATATTTGTCTTTCTCTTTCTAACTTATCTCACTTGGCA
TAATGCCCCTAAGGTCCATACATGAACTTGT-------------AAAAACAGAG--TAGAATGGTGGCTACCAAGG-CTG
GTGGGTAGCGGAATAGGAGAGATGTT---T-AACGGTACA-ACTCGCAATTAG--TAGAT----ATGTCCTGTGGATCTA
ATGCACAGTATAGCGATTATAGACAAAGACACAGTATAATAAATATTAAATTTGCTAAGTGGCTACAT----ATTGTTTT
CGCCAC-AAAAAAGAAATG-ATAATTAT-TGACATGACAGAGGTGTTAACTAATGCTACA-ATGGCGATCACATTGCAAT
ATATAAATGTACCAAAG-AATGTGTTAAACACCTTAAACTTACGCAA-TGTTATATGTAAA-TATATTTCAATT------
---------TAAAAGTATACGCGATGA---AATGCACAAATTTTAAGTGTACATTTGCTG-AGATTTGAC-AAATAAAAT
CAC
>Condylura_cristata
TACCTTGCATATTATTACCCAGAGTTCAGTTATTTTTTTTTCTGCACACTTTGGTGT-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------CAAATTTATACACAATGA---AATGCACGATATAGAAACGAACCTTTGCTG-AGATTTGAC-AAATG-AAT
CAC
>Solenodon_paradoxus
CAACTTGTGTATTATTACACAGAGTTCAA------CATTTTAAATGACATTTAATGT-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------AAAATTTATAAACA---A---AGCACACAAATTTGAAAGGCACATTTACTG-AGATGTAAC-AAGTACAGT
CAA
>Homo_sapiens
TAACTCACATATTATTAGCT--AGTTTGA-TA----GTTTTACAAA--TTTTAATGT-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------AAAATTTATGCATAATAA---AATGTGC-AGTTTTATGTGCACATTTGCTGTAGATTTGAC-AAATGCTGT
CAC



Dog452_LINE

>L1_CARN7_3END
---------------------------------------------------------------------------GATGG
TAACTAGACTTATTGTGGTGATCACTTCACAATGTATACAAATGTCGAATCACTATGTTGTACACCTGAAACTAATATAA
CATTGTATGTCAATTATACTCAAA-TAAAA----------------AAA-------------------------------
----------------------------------------------------------------------------
>Canis_familiaris
AGTGTTTGGGATACTATCAAGGGTCAGCAGTT--AGCGACAAGACTAGGACC---AG-AATACAATT---CT--------
-----AGATTTATCATGGTGAAAATTTCACAGTATATGC-AATATTGAATTGTTATGTTGT-CACTTGAAACCAATATGA
TGCTATATGTCAATTATACTTCAG-TAAAA----------------AACTTAATTT-AACTTAATTTTTTGAAAA-----
AGAATACAATTCTTCT---GATGCCTAG----ATG---TTCTCTGATGAGTGCCTGATGGGTTCAAGGAGTCCTTG
>Felis_catus
AGTGTCTGTAATATTGTCAA-GGTCAACAGTT--AGTGACAAGACTAGGGCT---AG-AATACAATT---CT--------
-----AGATTTATCATGGTGATTGTTTCACAGTATATAC-ACTACTGGATCATTATGTAGTACACCTGAAAGTAATATGA
TGTTATATGTCAATTATACCTTAA-TAAAAACTCGACCTTAATAAAAACTCAAATTTAACTTAATTTTTTGAAAA-----
CGAATACAATTTTTCT---GACACCTAG----ATATTTTTTTCTGATGGGTGCCTGATAGGTTCAGGGAGTCTTTG
>Manis_javanica
AGAGGCTGGGATATTATCAA-GGTCAACAGT------GACAGGACTGGGATT---AG-AATACAATT---CT--------
--CCCATATTTACCATGGTGATCATTTCACAGGGTAAACAAATATCAAATCACTATGCTGTGCACCTGAAATTAATATAA
TGCTATGTATCAATTATACCTCAATTGAAA----------------AAGTCAATTT-AATTTGATTTTTTT--AA-----
AGACCACAATTCTCCT---GATGCTGAG----ATG-CTCTTTCTGAAGGGAGCCTGGTGGATTCAGGGAGTCCTTG
>Sus_scrofa
AGAGGCTGTGATATTATCAA-GGTCAGCAGTT---GTGGCACGACTGAGATT---AG-AATGCAATTCTCCT--------
-----AGACTTAACGTGGTGGTAATTTCTCAGTGTATGCAAATACCAAATCATTATGGTGTACACCTTAAGCTAATATAA
TGTTATGTATCAATTATACCTCAA-TAAAA-ATT------------AATTTAA-------------TGTAATTAA-----
AAAATACAGTTCTCCT---AATGCCTAG----ATG-CTCTTTCTGATGGGAGCCTGGGGGGTTCAGGGAGTCCTCA
>Bos_taurus
AAAGGCTGTGATATTATCAA-GGTTAGCAGTT--ACTGATATAACTGGGATT---AG-AATACAATTCTCCT--------
-----AGAATTATTGTGGTGGTAATTACTGATTGTATACAAATATCAAATCATTATGGTGTACACCTAAAACTAATATAA
TGTTATGTGTCCATTATACCTGAA-TAAA-----------------AAATTAA-------------TTTAATTAA-----
AAAATACAATTCTCCT---GATGCC-GG----ATG-CTCTTTTTGAGGGGAGACTGATGGGTTCA-GGAGTCTTTG
>Equus_caballus
GGAGGCTATGATATTATCAA-GCTCAACAGTT--AGTGATGGGACTTGGATT---AG-AGTACAATT---CT--------
--------CCTATTGTACTGATCATTTCACAGTCTA--CAAATATTGAATCATTATGTTGTACACCTGAAACTAATATAA
TGTTATATGTCAATTATACACAAT-TAAAA-GTT------------AAATTAAACT----------TAAACAAAA-----
AGAATACAATTCTCCT---GATGCCTAG----ATT-CTCTTTCTGATGGGAGCCTGATGGGTTCAGGGAGTCTTTG
>Ceratotherium_simum
AGAGGCTGTGATATTATCAA-GGTCAACAGTT--AGTGATGGGACTGGGATT---AG-AATACAATTCTCCT--------
-----AGACTTATTGTGGTGATCATTTCACTGTATATACAAATATTGAATCATTATGTTGTACACCTGAAACTAATATAG
CGTTATATGTAAATTATACCTCAA-TAAAA----------------AAATTAAATTATATTAAACTTTTAAAAAG-----
AGAATACAATTGTCCT---GACGCCTAG----ATG-CTCTTTCTGATAGGAGCCTGATAGGTTCAGGGAGTCTTCA
>Myotis_myotis
GGAGGCTGTAATATTATTAA-AATCAACAGTT--ATTGACAGGACTGGGATT---AGAAATATAATTCTCCT--------
-----AGAGTTATT---GTGATCATTTTGAAGTGTATGTAAATATTGAATCATAATGTTGTAAACCTGAAACCAATACAA
TGTTATATGTCAACTATACTTCAA-TTTAATTTT------------AAATTAAACT----------TTTAAAATATT---
AAAATATTACAATTCT---GATGCCTAC----ATG-CTCTTTCTGATGGGTGCCTGATGGGTTCAGGAAATCCTTA
>Rousettus_aegyptiacus
AGAGGCTGTGATATTATCAA-GGTCAACAGTT--AGTGACATGACTGGGATA---AA-AATACAATTTTTCT--------
-----AGAC--ATT---GTGATCATTTCACAGTGTATATAAATAACAAATTATTATGTTGTACACCTGAAACTAAT----
-GTTATATGCCAATTATACCTCAA-TTTAA----------------AAATTAAGTT------AATTTTTAAAAAA-----
AGAATACAATTCTGTC---CANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>Condylura_cristata
AAAGGCTGTGATATTATCAA-GACCAAGAGAT--GGTGACAGGATTTGGATT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
AAA--ACAATTCTCTT---GATGTCTTG----ATG-TGCTTTCTGTTGGGAGACAGATGGGTTCAGGGAGTCCTTG
>Sorex_araneus
TGAGGTTGGAATAGTATCAA-GATCAACTGTTGAAATAACAGAACATTAAAT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
AAAATAT-TTTGTCCT---AATGATTT----------------TTATTGGAGTCTGATGGATTGAGGACGTCATTG
>Homo_sapiens
AGAGGCAATAATATTATCAA-GGTCAACAGTT--AGTAACAGGATTGGGGTT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
GGAATACAATTCTCCT---AATACCTAGATTAATG-ATCTTTCTGATGAGAGCCTGATGCGTTCATGGAGTCCTTG



Dog453_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
------TTTTTCCAGCTTTATTGAGGTATA-------ATTGACAAATAAAAATTGTATATATTTAA--GGTGTACAACGT
G--------------ATGTTTTGATATA--------------CGTATACATTGTGAAATGATTACCACAAT--CAAGCTA
ATTAACATATCCATCACCTCACATAGTTAC--CATTTTTTTGTGTGTGGTGAGAA-CACTTAAGATCTACTCTCTTAGCA
AATTTCAAGTATACAATACAGTATTA-----TTAACTATAGTCACCATGCTGTACATTAGATCTCCAGAACTTATTCA--
--------------------------------------------------------------------------------
>Canis_familiaris
GATGTGTCAAGACC----TAAAAACCAC-ACAAAATCTGGCCTTAACACAACTTC---TCACTATCTCC---TTTCTGTT
T--TCATTTTTCCAGTTTTATTGAGACATA-------ATTGGCATGT-AGCGCTGTATAAGTTTAA--GGTATACAAC--
---------------ATGATTTCATA----------------TGTCTATCTTGCAGAATGATCATCACAAT--AAGCTCA
GTTAAC--ATCCATCACCTCACAAAGCTAC--ATTT--TTTTC---TGATGAGAATTTTTTAAGATCTACTCTCTAAGCA
ACTTCCAAGTATACAATGCAGCATTG-----TTAACTATCGTCCTCACGTTGCACATGACAGCCCCG-------------
-TCTCTGTTTTC---AG-TTCCATCTAGTAC----AAGATAAGCAGTTGTTCCCCCCGCCCCCGTTTTCTTTGTTAAGAA
>Felis_catus
GATTTGTTAAGACC----TAAAAACCAC-ACAAAATCTGCCCTTAACATTACTAC---TCACTATTTCA---TTTCTGTT
T--TCATTTCTCCAGTTTTATTGGGACATA-------ATTGGCATAT-AGCACTGTATAAGTTTAA--GGTGTACAACAC
G--------------ATGATTCGATATACGCGTGTGTGTGCGTGTACATATTGCAATGTGATCACCGCAAT--AAGCTTA
GTTCAC--ATCCATCCCCTCACATAGTTAC--ATTT--TGTTCTTGTGATGAGAG-TTTTTAAGATCGACTCCGTAAGCA
ACTTTCAAGTATAGAATG------------------TACAGTCATCATGTTGCACATTACAGCCCCA-------------
-TCCCTGTTTTC---GG-TTCTATATAGCAC----AAGATGAACAGTGGTTTCCCC----------TTTTTTCTTAGAAA
>Manis_pentadactyla
AATAGGTTAAAA------CAGAAACCAC-ACAAAATCTGGCCTTAAGATTACTTC---TTGCTATTTTC---TTTTT---
---CTTTTTTCCAAGTTTTACTGAGATATA-------ATTCACATAT-AACATTCTCTAAGTATAG--GGTATACAGCAT
A--------------GTGATTTGAGAT---------------TTTATGTGTCATAAAGTGATAACCACAAT--AAGTTTA
GCTGAC--ATCC-TCACCTCACATAGTTACAGAACTTTTTTTCTTGTGATGAGAA-CTTCTAACATCTACTTTCTAAGCC
ACATTCAAATATACAACACAGTACTG-----TTAACTACAATCACCACGTTGTACATTATATCCCCA-------------
-TCACTATTTTC---AG-TTCTATATAGTAC----AAGGTAAACAGTGTTTTCCCC---------TTCTTTTGTTAAAAA
>Sus_scrofa
GATTTGTCAGGGCC----TAGAAACCGC-ACCAAACCTGGCCTTAACAAAACGCC---TCGCTATTGTC---TTTCTGTT
TTCTTGTTTC-CCAGTCTTACTGAGATAAA-------ACTGACATGT-GCCACTGTGCAAGTGTGA--GGTGTGCCACCC
A--------------GTGATTTGATACC--------------TGCATCGATTGTGACATGATGGCCACAAT--AAGTTTC
GTGACC--CTCCCTCACCCGAAGTGGTTACA-AGCCTTTGTTCTTGTGGCGGGAA-CTCTTAGGGTCTAGCCTCTGGGCA
ACTTTCAAATGCCCACAGCAGTGTCGCATCCTTAGCTCTCGTCATCGCGCTGTATGACACGGCCCCG-------------
-GCACTATCTTG---AG-TTCTATACACTGC----AAGGAAAACAGCCGTTTCCCC---------CTTTTTTGTTAAGAA
>Bos_taurus
GATCTGTCAAGGCC----TAGAAACCAC-AGAAGATCTGGATTTAGTATAATTTC---TCATTATTTTC---TTTCTTCT
TCCTTTTTCCTCCAGTTTTATTGAAATAGA-------ATTGATATAT-AACACTGTCTAAGTTGAA--GGTATACAACAT
A--------------ATAATATGATACA--------------GGTGGTTATTGGGACATGGTCACCATGGTAAAAAAAAA
ATTAAC--ATCCATCAACTCACGTAGTTACA-ATTCTTTTTTCTCATGGTGAGAA-CTTTTCAGGTCTACCCTCTTAGCA
ATGTTCAAATATGCAAAACAGCATTG-----TTGGCTATAGTCATCACGTTGTACGATACATCCCCA-------------
-GCACTGT-TTC---AG-TTCTATATAGTAT----AAGGTAAACAGTTGTTTCCTC------TTTTTTTTTTGTTAAAAA
>Equus_caballus
AATCTGTCGAGACC----TAGAAACCAC-ATCAAATCTCGCCTTAACAGAACTTC---TCAGTATTTTC---TTTCTTTT
TTCTTTTTTTTCCAGTTTTATTGAGATA---------ATTGACATAT-AACACTGCATAAGTGTAA--GGCGTACAACAT
A--------------ATGATTTGATATT--------------TGTATGTATTGTGAAATGATTACCACAAT--AGCTTTA
GTTAAC--AACTATCACCTCACATGGTTAC--AATTTATTTTCTTGTGGGGAGAC-TTTTTAAGATCTACTCTCTTAGCA
ACTTTCAAATATACAAAAGAGTATTG-----TTAGCTACAGTCATCCTGTTGTACTTTACACCCTCA-------------
-TGTCTATTTTC---AG-TTCTGTAC---------ACGGTAAACAGTTGTTTCCCC---------CTTTTTTGTTAAAAA
>Ceratotherium_simum
GATTTGTCAAGACC----TAAAAACCAC-ACAAAATCTGGCCTTAACATAACTTC---TCACTATTTTC---TTTGTTT-
---TTTTTTTTCCAGTTTTATTGAGATAAA-------ATTGACATAC-AACATTGTGTAAGTTTAA--GGTGCTCAACAT
G--------------ATTATTTGATAGT--------------TGTATATATTGTGAAATGATTACCAAAAT--AAGTTTA
GTTAAG--AGCCATCACCTCACATGGTTAC--AATTTATTTTCTTGTGATGAGAA-CTTTTAAGGTCTACTCTCTTAGCA
ACTTTCAAATATACAAAACAGTGTTG-----TTAACTATAGTCACCATGCTGTACATTACATCCCCG-------------
-TCTCTATTTTC---AG-TTCTATATAGTAC----AAGGTAAACAGTTGTTTCCCC---------CTTTTTTGTTAAAAA
>Myotis_myotis
GATTTGTTAAGACC----TAGAAATCACAAAAAAATCTGGCCTTAACATTACTTC---TCACTATTTTC---TTTCT---
---TTTTTTCCTCGGTTTTATTGAGGTATA-------ATTTACTTTATCACATTGTATAAGTTTAAATGTGGGAGAACAT
ATTTGGCAATGAGACATAATTTGATATT--------------TGTATATATTGTGAAATAATAACCACAAT---AAATTA
GCTAAT--ATCCATCACCTCACATAGTTAT--AATT--TTTCCTTGTAGTGAGAA-CTTTAAAGATCTACTCTCTTAGCA
ACTTTCAAATATGCAATACATTATTG-----TTAACTATAGTCACCATATAGTACATTAA----TCA-------------
-TCACAATTTTC---AG-TTCTATACAGTAC----AAGATAAATAGTTGCTTCCCC---------CTTTTTTGTTAAAAT
>Rousettus_aegyptiacus
GATTTGTGAAAACC----TAGAAACCAT-ACAAAATCTAACCTTAATATAACTTC---TCACTACTTTC---TTTCT---
-----TTTCCCCCAATTTTATTGAAATACAAAGTTTTACTGACATAT-AACACTCTATAAATTTCA--GGTGTATGACAT
A--------------ATAATTTGATATA--------------TGTATATATTGTGAAATGATCACTACAAT--AAGGTTA
GCTAAT--ATCCATCACCTCACATAGTCAT--AATTTTTTTCTT----GTGAGAA-TTTTTAAGATCT---TTCTTAGCT
ATTTTCAAGTATGCAATACAGTATTA-----TTAGCTATAGTGATCACATTGTACAT-----CCCCA-------------
-TTACTATTTTC---AGTTTTTATATAGTACTAGGTAGGTAAACAGTTGTTTCCCC--------CTTTTTTTGTTAAAAA
>Condylura_cristata
GACTTGCCAAGACCTAGGTAGAAACCAC-ACAAAATCTGGTCTTCACATAACTTT---TCATTATTTTC-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------AG-TTTGATATAGTAC----AAGGTAACCCGTTGTTCCCCT-----------TTTTTCTTAAAAA
>Erinaceus_europaeus
GATTTCCTGAGACC----CAGAAACCAC-ACAAAATCTGGCCTT-ATATACCTTC---TCACTATCTTC-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------AG-TTCTATCTAGCAT----AAAATAAATTATTGTTTCTCC----------CTTTTTGTTAAAAA
>Homo_sapiens
GATTTGTCAAGACC----TTGAAACCGT-ACAAAATCTGGCCTTAACATTACTTC---TCACTATTTTC-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------AG-TTCTATACAGTAC----AATGTAAACAGTTGTTTCCCC---------TTTTTTTGTTAAGAA



Dog455_LINE

>L1MA9_3END
------------------------------------------------------------------------------TT
TTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACG-TGATGTTTTGA------
----TATACGTATACATTGTGAAATGATTACCACAATCAAGCTAAT----------------------------------
--------------------------------------------------------------------------------
>Canis_familiaris
AGGTCAGAATTTGCATCAAC-CCTTCTTACACAGTATTTAGCAAATTGAAT---GAAGAAGACATTTTCTT----TTCCT
TTTCCAGCTTTATTGAAATCTAATTGACACAG-GATCTTGTGTAACTTTATGGTGTACAACA-GAATGATTCAA------
----TATATGTATATATTGCAAAATTGTT--------------------CAGAAGGGTGTTTTTACTT---CATCTATTT
TTT-----TCCCTCAGGGGGAA-AAT------------------------GAATATAA-AATT--------TTAAAGGTA
>Felis_catus
AGGTTGGGGCTTGTGGAAAC----TATTACACAGTATTTAGCAAGTTGAAC---AAGGAGGAAATTTTCTT----TTTCT
TTTCCAGCTTTATTGGAACATAATTGATATAG-AATACTGTGTAAGTTTATGGTATACAAAAGTAATGATTTGA------
----GATATGTATATATTATGAAATTATT--------------------GAGG-GTGTT--TTTTCTT---CATCAATTT
TTCTT---TTCCTCAGTGGGCACAAT------------------------GAATACAA-AATT--------TTAAAGGTA
>Manis_pentadactyla
AGGTCAGGACTTTCACTAAC-AATTACTACAGAAAATTCATCCAGTT---C---GTTGACAGTATTTTCTT---TTTTCT
ACTCCAGCTTTATTGAAACATAGTTGACATAG-AACATTATATAATTTTAAGGTATTCAATG-TAATGGTTTGATGTATA
TATATATACATATATATTGC-AAATGATT--------------------GAAACAGGTC--TTTTCTT---AATTTTT--
--------TTCCTCAGCAGGCACAATAATTACAAGATTTTTAAAGGTAGAAAATAAAAGAATT--------TTAAAGGTA
>Equus_caballus
AGGTCAGGAGTTGCACC----AATTGTTACACAATATGTAACAAGTTGAAG---GAGGAGGGCATTTTCTT----TTTCT
CTTCCAAC--TATTGAAATGTAACTGACATAT-AACATTGTGTAAGTTTAAGGAGTACTACA-CGATGATTTGA------
----TATATGTATATATTGCAAAATGATT--------------------GAGGAGGGTA--TTTTCTT---AATCTGTTT
---TC---TTCCTCAGTGGGCACAAT------------------------GAATACAAGAATT--------TTAAAGCTG
>Ceratotherium_simum
AAGTCAGGACTTGCAC---C-AATTGTTACACAATATTTAGCAAGTTGAAG---AAGGAGGTTATTTTCTT----TTTCT
TTTCCAGCTGTATTGAAATGTAATTGACATAC-AACATTGTGTAAGTTTAAGGTGTAAAACA-TAATTATTTAG------
----TATATGTGTATATTGCAAAATGATT--------------------GAAGAGGGTA--TTTTCTT---AATCTATTT
---TC---TTCCTCAGTGGGCATAAT------------------------GAATACAAGAATT--------TTAAGGGTA
>Myotis_myotis
AGGTCAAGACTTGCATCAAT-AATTGTTACCCAATATTTAGCAATTTGAAG---GAGAAGGGTATTTTCTC----CTCCT
AACTCAGCTTTATTGATATATAATTGGCATAT-AATATTGTATAAGTTTCAGTTCTACAATA----TGTTTTGA------
----TATATGTATATATTGCAAGATGATT--------------------GATGATAGTA--TTTTCTT---AATCTATTT
--------TTTCTTAGTGGACACATG------------------------GAATACAAGAATT--------TTAAAATCA
>Rousettus_aegyptiacus
AGGTTAGGATTTGCATGAAC-ACTTGTTACCCATTAATTAACAACTTGAAG---GAAGAGGGCATTTTTTG----TTTTG
CCCCTAGTTTTATTGAAATATCATTGGCATAG-AACATTGTATAAGTTTAAGTTGTACATTA-TGATGATTTAC------
----TGTACATACATGCTGCAAAATGATT--------------------AAAGGCTATA--TTTTCTT---AATCTATTT
TTCTT---TT-------GGGCACAAT------------------------GAATACAAGAATT--------TTAAAGGTA
>Condylura_cristata
AAGTCTGGACTTCCACTAACAAACTGTTGTGCTATTTTTAGTGAGTTGGAA---GATGAAAGTATTTGTCT---------
CACCCAGATTTATT-ATATGTAATTGATAGAT-AATTTTATGTAACTTTAAGGTATACAATA------TATTGA------
----TACATGTATACATTGCAAAATAAC---------------------AGG----GTT--TTTTCTT---TATTTTTTT
TTTTC---TAAATTAATGAGCA-AAT------------------------AAATTCAGGAATTT-------TTAAAGCTA
>Uropsilus_gracilis
AGGTCTGGTCTCATACTAAC-AACCGCTAGATGGAATTTAGCAAATTAAAA---GAGGACAATATCT-CCC---------
CACCCAAATTTATT-ATGTGTAATTGAT--AT-TATTGCATG----TTTAATGTACACAATG-TAGTGATAAAG------
----CATAAGTGTGCATTACAAAATTAG---------------------GGG----GAT--AGTAATT---TATTTTATT
T----------ATCAATGAGCAAAAT------------------------GAATACTGAGATGT-------TTAAAGCTA
>Sus_scrofa
ATGTTAGCATTTGCCTGAAC-AATTGTCACAAAATAGTTAGCAAATTAAAG---GAGGGGGGTATTTTCTC---------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------AATCTATTT
TTTTTTAATTCCTAAGTGGACACAAT------------------------GAATATAAGAATT--------TTAAAAGCA
>Tursiops_truncatus
AGGTCAGGATTTGCATGAAC-AATTGCTTCACAATCGTTAGCAAGTTGAAG---GAGGAGGGTATTTTCTC---------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------AATCTCTTT
TTTTA---TTCCTCAGTGGTCACAAT------------------------GAATACAAGAATT--------TTAGAGATA
>Homo_sapiens
TGGTCAGGATTTGCACCCAC-AATT--------------AACAAATT---G---GAGGAGGGTGTTTTCTT---------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------AATCTGTTT
----T---TTCCTCAGCAGGTACAAT------------------------GACTATGAGAATTTCTCCCTCTTAAGAGTA



Dog462_LINE

>L1_CARN7_3END
------------------------------------------------------------------------------AA
CNTTGTATGGTGACAGATGGTAACTAGACTTATTGTGGTGATCA-CTTCACA----------------------------
--------------------------------------------------------------------------------
-----------ATGTATACAAATGTCGAATC-----------ACTATG---TTGTACACCTGAAACTAATATAACATTGT
A--TGTCAATTATACTCAAATA------------AAAAAA----------------------------------------
-----------------------------------------------
>Canis_familiaris
TCTGACTTGCTTTGATCT-ACCCTTACT---ACTCTTAAAGTGTCCCACTCCATAT---AAGAATGCCCTTCCAT-----
--------GATG---GATGTTAAATCAACTTATTGTGGTTATCA-TTTCACATA---GTATATATATATATATATATATA
TATATATAT--------------ATATATATATATATGTAT----------------ATATATACATATATATGTATATA
TACACACACACACATATATTTATGTCAAGTCATTCATTATTCATTATG---CTGTCCACCTCAAACTTAGAGAATGTTTT
A--TGTCAATTATATTTCAATAGACCTAGGG---GAAAAAA---ATGAGTGTCCTTCCTC---TCTCCTACAAA------
-----TAGATTTTGTCATTCATTA-------AATGATTTA-TCTAAA
>Felis_catus
TCTGACTTGCTTTGGTTT-GCCCTTACT---ACTCTTAAAGTGTCCCGCTCCGTAT---AAGAATGCCCTTCCAT-----
--------GATG---GATATTAACTCAGCTGATTGTGGTAATCC-TTTTATATATATATATATATATATATATATATATA
TATATATATACACACACACACACATATACATATATGTGTATATATATAAATAAATAAATATATATATATATAAATATATA
TAAATACACACACACACATATATATGAAGTC-------ATTCATTATG---CTGTCTACCTCAAGCTTCTGGAGTGTTGT
A--TGTCAATTACATCTCAAGAGAACTAGGG---GAAAA-----AAGAATGTCCTTC-TC---TCTCCTACAAA------
-----TAGACTTGGTGATTCATTT-------CATCATTTA-TTTAAA
>Manis_pentadactyla
TCAGACTTGCTTTGGTT--GATGGGACT---GCTTTTAAGGAGCTCTGCTCCATAT---AAGAATGACTTTCCCT-----
--------GATG---GATGTTAACTAAA------------ATCG-CTTCACA----------------------------
--------------------------------------------------------------------------------
-------------ATAGACGTGTGTCAAATC--------------GTG---CTGTACACCTTANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----NNNNNNNNNNNNNNNN---NNNNNNNNNNN------
-----NNNNNNNNNNNNNNNNNNN-------NNNNNNNNN-NNNNNN
>Equus_caballus
CCTGACTCGCTTTGGTTT-GCCCTTACT---GCTTTTAAAGTTGCCCATGCCGTAT---AAGAATGCCATTCCTT-----
--------GATG---GATGTTAACGAAACCTGGTGTGGTGGTCA-TTTCACG----------------------------
--------------------------------------------------------------------------------
-------------ATATAAGTATGTCAAGTC-----------ATTATG---CTGTACACCTTAAACT--CACAGTGTGGG
A--GGTCAAGTATATCTCAATAAAACTAGGG---AAA-------AAAAATGCCCTTCTTC---TCTCTTACAAA------
-----TAGAATTGGATATTCATT--------AATCGTTTA-TTTAAA
>Tapirus_indicus
TTGGACTTGCTTTGGTTT-GCCCTTACT---GTTTTTAAACT-------TCCATAT---AAGAATGCCATTCCCT-----
--------GATG---GATGGTAACTAAACCTATTGTGGTAATCA-TTTCATA----------------------------
--------------------------------------------------------------------------------
-------------ATATATGT-----AAGTC-----------ATTATG---CTATACACCTTTAACTTGTACAGTGTCGT
A--TGTCAAGTATATCTCAATAAAACT--GG---AAA-------TCAAATGCTTTTCCTC---TCTC--ATGAA------
-----TAGAACTGGATATCCATTT-------AATCATTTA-TTTAAA
>Myotis_myotis
TC-AACTTGCTTTGGCTT-GCCCTTACT---GCTTTTAAAGTG-TCCAGTCTAAGT---AAGAATG----TCCTA-----
--------GGTG---GCTCTTAATTAAACATAGTGTGATAATTA-TTTCACA----------------------------
--------------------------------------------------------------------------------
-------------ATATATGTATATCAACTC-----------ATTATG---CTGTACACATTAAACT--TACAGTATTGT
A--TGTCCATTGCATCTCAATAAAACT--GG---TCAAAAA---AAGAATGTCCTT--TC---TCTCTTACAAATTTGGA
TATCTTGGATCTGGATACTCGTTT-------AATCATTTA-TTTAAA
>Rousettus_aegyptiacus
TCCG-CTTGCTTTGGCTT-GCCCTTACT---ACTTTTGAAGTG-CCCACTCCAAAT---AAGAATGTCCTTCCTT-----
--------GAGG---GATGCTAACTAAACTGATCGTGGTGATCATTTTTGCA----------------------------
--------------------------------------------------------------------------------
-------------ACGTATGTATGTCAAGTC-----------ATCATG---CCGTATGCCGTAAACTTACACAGCGCTGT
A--TGTCAATTATATCTCCATACAACTTGGGGGTGGGAAGC---AAGCATGCTCTTCCTC---TCTGTTACAAA------
-----TAGAATTGGACATTCATTTAAAATAAAATCATTTA-TTTTAA
>Condylura_cristata
TCACACTTGTTCTAGCAT-GCCCTTACT---AATTTTAAAATGCCCCACTCTGTTT---AACAATGCCAACCCTC-----
--------AATG-------TGAACTAAATTCATTCTGGTAATCA-TTCCCTG----------------------------
--------------------------------------------------------------------------------
-------------AGATATGAATGCCAAGTC-----------AGTATGTTATTGTACACCTGGAACTTACACAATGTTGT
ATGTGTATATCATATCTCAATTAAACT--------GAAAAA---ATTTATGCTTTTCACC---TC----ATGAA------
-----TAGAATTGAATGCTCATTT-------TATCATTTA-TTGTAA
>Uropsilus_gracilis
TCACACTTGCTCTGGATT-GCCCTAACT---AATTTTAATGTGCCCCACTCCAACT---AACGTTGCCCGTCCTT-----
----GATGAATG-------TGAACTAAATTCATTCTGGTAATTA-TTCCCTA----------------------------
--------------------------------------------------------------------------------
-------------ATATGTGCATGTCAAGTT-----------GGCATG---TTGTACCCCCGAAATTGATACCATGTTTT
A--AGTCAATTATATCTCAATTAAACT--------GAAAGG---A---ATGCTTGAC-TC---TC----ACAAA------
-----TAGACTTGGAAATTCATTT-------GATCATTGA-TTATAA
>Sus_scrofa
TCCGACTTGCTTTGGCTTGGCCCTTACTATGGCTTTTAAAGTGCCCTAATCTAGAT---AAGAATGCCCTGCTTC-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------TCCCTTACAAA------
-----TAGAATTGAATATTTATTT-------AGTCATTTA-TTTTAA
>Vicugna_pacos
TGCGACTCGCTTGGGTTT-GCCCTTACT---GCTTTTAAAGTGCCCTCCTCCAGAT---AAGAATGCCCTTCCTC-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------TCCCTTGCAAA------
-----TAGAATTGGGTGTTCACTT-------AGTCATTTA-TTGTAA
>Homo_sapiens
TCTGACTCACTTTGTTTT-TCCCTTAAT---GCTTTTAAAGTGCCCCACTCCATAT---AAGAATG---TTCTTC-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------TCTCTTAGGAA------
-----TAGAATTAGATATTCATTA-------AATCATTTATTTTTAA



Dog463_LINE

>L1_CARN7_3END
------------------------------------------------------------------------CTTCACAA
TGTATACAAATGTCGAATCACTATGTTGTACACCTGAAACTAATATAACATTGTATGTCAATTATACTCAAATAAAAAAA
--------------------------------------------------------------------------------
--
>Canis_familiaris
TCAACATAA--TGCCTG----ACGACATAAGAGTT------ATTATCCACTGATC---AGAAATAATCA-----------
----TACAAATAGCAA---ACTATGTTGTACACCTGAAACTAAT---ATGTTATATATCAATTATACCTCAATTAAGAAA
---AA---ATAAAGAAC-CA---ATTACCCCCC-ATTACCTACAGCTTCAAATCATAA-CTCTCAGCTGGA-------TT
GT
>Felis_catus
TCAACATAA--TGCCTG--ACCCACAGTAAGAGCT---ATTATTATACACTGATC---AGATATAATCA-----------
----TACAAATACCAA---ATCATGTTGTACACCTGAAACTAATATAATGTGACATATCAATTATACCTCAATTTAAAA-
--------AGAAATAAC-CA---ATTGCTCCCC-ATTTCCTGCAGCTCCAAGTCCTAA-CTCTAAGCTGCATCTACACTG
GT
>Manis_pentadactyla
TAAACATAA--TGCTCA--GCACATGGTGAGAACT------ATTATCCACTCGTC---AGAAATAATTC-----------
----TTCAAATACCAAATCATTATGTTGGACATCTGAAACTAATCTAATGTTGTATGTCAGTTATACCTCAACTNNNNNN
NNNNN---NNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NN
>Equus_caballus
TCAACGTAA--TCCCAG--GCACATGGTAAAAGCT---ATTATTATCCACTAATC---AGAAATAATTA-----------
----TATAAATATTGAATCATTATGTTGTACACCTGAAACAAATATAATGTTATATGTCAATTACACCTCAATTAAAAAA
AGGAA---GAAAGAAAC-CA---ATGACTCCCC-ATTACCTACAGCTTCAAATCCTAA-CTCTCAGCTGCA-------TG
GT
>Ceratotherium_simum
TCAACATAA--TCCTGG--GTACATGGTAAGAGCT---ATTATTATCCACTAATC---AGAAATAATTA-----------
----TACAAATACTGAATCATTATGTTGTACACCTGAAACTAATATAATATTATATGTCAATTATACCTCAATTAAAAAA
---AA---AAAAG-AAC-CA---ATGACTTCCC-ATTACTTACAGCTTCAAATCCTAA-CTCTCAGCTGCA-------TG
GT
>Myotis_myotis
TCAA--TAA--TGCCTG-----------------------------------ATC---AGAAATAATTA-----------
----TACAAATACCA--TTGTTATGTTGTACATATGAAACTA-----ACATTATATGTCAATTATACCTCAGTTTTTTAA
GAAAA---AGAAGTAAC-CA---ATGACTTCCC------------------ATCCTAG-CTCTCAGAGGTA-------TG
GT
>Rousettus_aegyptiacus
TCAACACAA--TGGTAGGAGCACATGGTAAGTGCTATCATTATCATCCACTGATC---AGAAATAATTA-----------
----TACAAATATCAAATCATTATGTTCTATACTTAAAACTAATATAATGTTATATGTCAATTATACC------------
----------------------------------------TACAGCTTCAAATCCTAA-CTCTCAGATGCT-------TG
GT
>Sus_scrofa
TCAATATAA--TACCTG--GTACATGATAAGAGCT------ATT--CTACTGAT--------------------------
--------------------------------------------------------------------------------
--------AGAAATAAT-CA---A-GACTCCCC-ATTACCTACAGCTGCAGATCCTAATTTCTCAGCTGCA-------TG
GT
>Bos_taurus
TCAATATAA--TTCTGG--GTATATGGTAAGAGCT---ATTATTATCCACTAATG-------------------------
--------------------------------------------------------------------------------
--------AGAAATAAT-CA---A-GACTTCCC-ATTACCTGCAGCTTCAAATCCTGA-TTCTTAGCTGTG-------TG
GT
>Condylura_cristata
TCAACATAA--TGCCTA--ACACACGGTAAGAGTTACTGTTATT----ACTCATG-------------------------
--------------------------------------------------------------------------------
--------AGAAGTAAT-CA---ATGATTCCCCCATTACCTAC--CTTCAAACCCTAA-TTCTCAGTCATG-------TG
AT
>Sorex_araneus
TCAATATAAGTTGTTTG---------GTAAGAGCT---GTTATTACCCCCTAATC-------------------------
--------------------------------------------------------------------------------
--------GGAAATAAACCC---ATGGTCCCCC-ATTGCCTATAGTTTCAAATCCTCT-CAGTTAGTTGCA-------AG
GT
>Homo_sapiens1
TCAACAAAA--TGCCTGGC--ACAAGGTAAGAGCC---ATGATAATCCACTGATC-------------------------
--------------------------------------------------------------------------------
--------ACAAATAAT-CA---ATGACTCCTC-ATTACCTACAGCTTCAGATCCT---CTCTCAAGGACA-------TG
GT
>Homo_sapiens2
TCAACAAAA--TGCCTGGC--ACAAGGTAAGAGCC---ATGATAATCCACTGATC-------------------------
--------------------------------------------------------------------------------
--------ACAAATAAT-CA---ATGACTCCTC-ATTACCTACAGCTTCAGATCCT---CTCTCAAGGACA-------TG
GT



Dog474_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------------TT---TTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAAC
GTGATGTTTTGATATACGTATACATTGTGAAATGATTACCACAATCAAGC---TAATTAACATATCCATCACCTCACATA
GTTACCATTTTTTTG-----TGTGTGGTGAGAACACTTAAGATCTACTCTCTT-AGCAAATTTCAAGTATACAATACAGT
ATTATTAACTATAGTCACCATGCTGTACATTAGATCTCC--AGAACTTATTCATCCTGCATAACTGAAACTTTGTACCCT
TTGACCAACATCTCCCCATTTCCCCCACC-C-----------CCCAGCCCCTGGCAACCACCATT--------CTACTCT
CTGCTTCTATGAG------------------------TTTGACTTTTTTAGATTCCACATATAAGTGAGATCATGCA---
---GTATTTGTCTTTCTGTGCCTGG-CTTATTTCACTT-AGCATAATGTCCTCCAG------------------------
-------------------------------------------------------
>Canis_familiaris
TAATATTGTTCATGAGTTTCTAAAATTAGAATTAAGG-TACTTGCACAG-----TTATTTT---TAATTTGTTTGAT--A
GC------------TTAAGTCTTTTATTTTAAT------TAATCTACATAT-GACATTCTATTAGTTTCAGGTGTACAAC
ATAATGATTCAATATTTTTATATATTACAAAATAAGCATTACAATATGCC---TCATTAGC--AACCATCATCACACATA
GTTACAAATTTTTT------CTTGTGAAGAAGACTTTTAAGATTTACTTTCTTAAGCAAGTTTTAAATATGCAATACTGT
ATTATTAATGATAGTTACCATGCTATATATTATATACCCTACTCATTTATGT------CATAACTGGAGGTTTGTACCTT
TTGACC-CCCTTCACCCATTTTGCCCACT-C------TATACCCTTATCACTGGCAACCACCAGT-TGCCATTCTATTCT
CTGTATGTAA----------------------------------TCTATTCTCTGTATGTATGAATTTGTTTGTTTAGTT
TTGGTAGTTGTCTTCCT----CTGA-ATTATTTCATTTAAACATAACTT----------TTTTTTTTAACCATAAC---A
CC----AATACAAGGCATAATTTTTCTTAGTGAATATTTAGGAA------AATGC
>Felis_catus
TAATATTGTTCATGTATTTCTAAAAATAAAATTGAGG-TACTTTCACAA------TTGTTT---TTATTTTTTTGGTAGA
GC---TGAGCTTGATTAGGTCTTTTATTTTAATTAAACACAATTTATATAT-GACATTACTTTCAT---ATATATATAAC
ATAATAATTCAATATTTGTATATATTACAAAACGATCACCACAATAAGTC---TAGTTAAC--ATCTGTCACCATACATA
GTTACAAATGTTTTCTT---CTTGTGATGAGGACTTTTAAGATCTACTCTTTT-AGCAAGTTTCAAATATTCAATACAGT
GTTATTAATTATAGTCACCATATTGTTTATTATATACCC--ATGACTTATTT------TATAACTGGAAGTTTGTACCTT
TTGACC-CCTTTCACACATTTTGCCTACC-C------TCTACCCTCATGTCTGGCAACTACTAATCTGTTCTTCTATTTT
CTGTGTCTATAAGGGTTTTTTTTCCTTTCCTTTTTTTTTTAA--ATTTTAGATTCCACATATAAGTGAGATCATATG---
---GTAATTGACCTTCTCTGTCTGA-ATTACTTCACTTAAATGCT--------------TTTTTCTCTACTATAAC---A
CC----AATATAAGCCAGAACTTTGCTTAGTGAATATTTAGGAAAATGAGAGTGC
>Manis_pentadactyla
TAATATTGCTCATATGTTTCTAAAATTAGAATTAAGG-TACTTGCATAG---------------CTGTT-GCTTTGTAGA
GC---AGAGCTTGGTTAGGTCTTC-ATTCTCATTAGGTATGACTGGGAGAT-GACAT-------ATTTTGGGTGTCCGAC
ATAAGGAGGTGATA--CATACACACTGTGAAATGATCAGCGTGACATGACATACAGTTAAC--ATGTGTCACTGAATGTA
GTCAAAAAAAGCTCT-----TTTCTTATGATGATTTTTAAGATGTATTCTCTT---------------------------
---AGTAAGTGTAGTCCGTATGTTGTGCATTACATCACC--ATGACTT-TTTAATTTTTATT-TTGTAAGCTTGTACCTG
TTGACC-CTCTTCACTCATTTAGCCCACC-C------------CCTGCTCCTGCCAAC----AGT--------CTGTTCT
CTGTATCTATCTG----CTTG--------CTTTTGTTTTTAA--TGCTTAGATTCCACATATGAGTGAGATCAT------
----TATTTGTCTTT------TTGA-CTTATTTTACTTCAG------------------AGTTTTTTCATTACAAC---A
CG----AATACAAACCACAA-TTTGCTTAGTGAATATTTAGGAAAATGAGAATGC
>Sus_scrofa
TAATGTTGCTCATGTATTCCTAAAATGAGAATTTAAG-CACCTGTGCAGCTTTTTTTTTTT---TTTTTTTTTTGGTAGA
GC---AGAACTTGATTAGGTCTTTTTAAAAAATGAGATATAATTAACATAT-GACATTATATTAATTTCATATATACAGC
ATAAGGTGTTGATATTTGTATATATTGCAAAATGATCACCACAATGGTTC---TAGTTAAC--GTCTGTCACCATATATA
GTTACAAAAATTTAATTTT-CTCCTGATGAGGAATTTAAAGTTCTATTCAATT-----------------------CATT
ATTATCAACTATAGCCGCCATGATGT------------------ATTTATTT------GATAACTGGAAGTTTGACCCTA
TTTACC-CGTTTTGCTCACACTGCCTTCCTCCCCCTACCTGCCATCACCTCTGGCAACCATCAGT--------TTGTTCT
CCGGATATATGACGGGGTTTT---------TTTTAATTTTAA--TTTTTAGATTCCACATATAAGTGGGATCATAC----
------TTTGTCTTTCTCTGCCTGA-CTTATTGCACTTACATACAGCTT----------TTTTTCTTTACTGGGAC---A
TC----AGTGCAACTCACAGTTGGGCTTAGTAAATATTTAGGAAGATGAGAATGC
>Bos_taurus
TAATATTGCTCCTGTGTTTCTGAAATTAGAGTTAAGC-TACTTGCTCAG-----------T---TTTTCATTTTTTTAGA
AT---GGAATTTAATTACTTCTTTTTTTAAAATGAGGTATAATCACCTTAT-------ATATTAGTTTCATGTGTATCAT
AC------------TTTGTATATAATGTAAAATGATCAT-------AGTC---TAGTTAAC--ATTTGT-----TACATA
GTTGCAAATTTTTTGTTTTCCTCCTGATGAGGTCTTTTAAGATCTACTCTTTT-AGAAAGTTTCATATATGCTGTTAGTT
ATTGTTGACTATAGTCAGCATGCTGTCCATTACATCCCCATGACATTTATTT-TTTTGTATA-----GAAGTTGTACCTT
TTGAAC-TTACTTACCCGTTTTTCTCATC-ACCACTCCAACGCATTACCTATGGCAACCACCAAT--------TTGTTCT
CTGTATCTATGAGGTTTTTGT--------TTGTTTGTTTTGG--TTTTTTCGATCTACATATAAATGGGATCATACA---
-------TTGTCTTTCTCTGTCTGACCTTATTTCACATTCATACAGC------------TTTTTCTTTACTGTAGC---A
CA----AATATTGTTCACAA-TTTGCTTAGTAAATATTTAGGAAGATGAGAATGC
>Equus_caballus1
TAATATTGCTCATGTGTTTCTAAAATTAGAATTAAGG-TACTTGCACAG----------CT-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------TTCTTCTTCACCTTAAC---A
CC----AATGCAAGCCACAA-TTTGCTTAGTGAATATTTAGGAAAATGAGAATGC
>Equus_caballus2
TAATATTGCTCATGTGTTTCTAAAATTAAAATTAAGG-TACTTGCACAG----------CT-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------TTTTTCTTTACCTTAAC---A
CG----AATACAAACCACTA-TTTGCTTAGTGAATATTTAGGAAGTTGAGAATGC
>Equus_caballus3
TAATATTCCTCATGTGTTTCTAAAATTAAAATGAAGG-TACTTGCACAG----------CT-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------TTTTTCTTTGCCTTAAC---A
CG----CATGCAAGCCACAA-TTTGCTTAGTGAATATTTAGGAAGATGAGAATGC
>Ceratotherium_simum
TAATATTGCTCATGTGTTTCTAAAACTAGAATTAAGG-TACTTGCACAG----------CT-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------TTTTTCTTTAATGTAAT---A
AC----AATGCAAGCCACAA-TTTGCTTAGTGAATATTTAGGAAAATGAGAATGC
>Myotis_myotis
TAATATTGCTCATGTGTTTCGAAAGTTAGAATGGAGG-TACTTGTACAA---------CTT-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------TATTCTGTAACAATAAC---A
CC----AATACAAGCCACAA-TTTTCTTGGGAAATAGTCAGAAAAATTAGAATGC
>Rousettus_aegyptiacus
TAACATCACTCATGTGTTTCTAAAATTAGAGTTTAGG-TACTTGGACAG----------TT-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------TTTTCTTTAACTCTAAC---A
CTGATCAATACCAGGCACAA-TTTGCTTAGTGAATGTTTAGAAAAATGAGAATGC
>Condylura_cristata
T-GTATTGTTCATAGAGTTCTAAAATTAGAATTAAGGCCACATGAACTG----------CT-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------TTTTTCTTTACTATAAT---A
AC----AATACAAGTCTCAATTTGTTTTANNNNNNNNNNNNNNNNNNNNNNNNNN
>Erinaceus_europaeus
TAATATTGTTTTT---TCTCTAAAATTAGAATTAGGA-TACTTACACAGCTTA------TT-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------CTCTACTTCACC---AT---A
CC----AATATAAGTGCCAA-TGTATTTGGAAAAGGTAAATAAATTAATGGGTAC
>Homo_sapiens
TAATATTCTTCAATGGTTTCTAAAATTATTACAAAGG-TTTTTGC--AG----------TT-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------ATTTTCTTTGCTGTAAC---A
TC----ATTGCA-----------TACTCAGTAAATATTTAGGGACAGAAGAATAC



Dog482_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
---------TTTTTCCAGCTTTA---------------------TTGAGGTATAATTGACAAATAAAAATTGTATATATT
TAAGGTGTAC----AACGTGATGTTTTGATATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATC
CATCACC-TC---------ACATAGTTACCATTTTTTTGTGT-------GTGGTGAGAACACTTAAGATCTACTCTCTTA
GCAAA---TTTCAAGTATACAATACAGTATTATTAACTATAGTCACCATGCTGTACATTAGA-TCTCCAGAACTTATTCA
TCCTGCATAACTGAA--ACTTTGTACCCTTTGACCAACATCTCCCCATTTCCCCCACCCCCCAGCCC------CTGGCAA
CCACCATTCTACTCTCTGCTTCTATGAGT-----------TTGACTTTTTTAGATTCCACATATAAGTGAGATCATGCAG
TATTTGTCTTTCTGTGCCTGGCTTATTTCACTTAGCATAATGTCCTCCAGGTTCATCCATGTTGTCACAAA-TGGCAGGA
TTTCCTTCTTTTTTAAGGCTGAATAATATTCCATT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------GTGTATATATA----------------CCACATTTTCTTTATCCATTCATCCGTCGATGGACAC-TTAGGTTGN
TTCCATATCTTGGCTATTGTGAA---------------------------------------------------------
-----------------
>Canis_familiaris
GTGCAGC--TTCTCAAAATTCTGGTCATGACTCAGT--GGACACACGTTAAGATGTTTCCC-AAAATAA---TTCTTACT
CCT---TTATTTTTCCATTTCTAAATT----TTGTCTTTATGAACTGAGTTATAATTGACATAC-AACATGA-----GCT
TCAGATATAC----AACATAACGATTTG-TATTTGTATATATTGTAAAATGATCAACACAAAAAGCCCA--TAAC--ATC
CATCATCGTCAGTTGTC--ATATATTTAGAAAACTTTTCTT--------GCAGTGAGAACTTTTAAGAGCTACTCTCTTT
GCAAC---TTTCAAATACGCAATACAGTATTATTAATTAGAGTTGCTGTGCTTTGCATTACATTCCTTATGACTTTTTTT
-----TATAACTTATTTATTTTATGCCTTTTATCCCTC-TTTATCTATTTCTTCCATCCCAAACCCC-CACCTCTAGCAA
TTACCAATCTGTGCTCTATATTTCTGAGTTCTGTTTTTTGTTTGTTTTTTTAGATACCTCATATAAATGAGATCAGAGAG
TATTTGTCTTTCTCTGTCTGACTTAGTTCACTTAGCATAATG-CCTCAAGGTTTGTCCACGTTGTCACTAA-TGTGAAGA
TTTCCTTCTTCTTTGTAGCTAAATATTATTCCATTTCTTTTTTTTTTTTTTTTAATTTTTTTTTTTTTTATTTATTTATG
ATAGTCACAGAGAGAGAGAGAGCGCGGCAGAGACACAGGCAGAGGGAGGAACAGGCTCCATGCACCGGGAGCCTGATGTG
GGATTCGATCCCGGGTCTCCAGGATCGCGCCCTGGGCCAAAGGCAGGCGCCAAACCGCTGCGCCACCCAGGGATCCCTAT
TATTCCATTTCTATATATCTTTTTTCTTTATCCCTACATTTTCTTTATTCATTCATCTATTGACTGACAATTTAGATTGT
TTCCAAATATTGGCTAA---------TTCTTATTCAT---AAT----ATGAGCAATTTAATGGAATATCCTC-TCTTTGT
TTATATTTGATTTATTT
>Felis_catus
GGACAGTGCTTCTCAAAATGTTGGTCATGGCCCAGT--GGGCACATACTAAAAGGTTCCCC-AAAACAA---TTCTTACT
CTT-----TTCTTCCCATTTCTAAACT----TTGTTTTTACGACTTGACGTATAACTGGCATAT-AACATTA-----GTT
TCAGTTATAC----AACATAATGATTCAACATTCATATATATTATAAA---ATCACCACGATAAGGCTGGTTAAC--ATC
CAT-ATCGTCAGTTGTCATATATAGTTACAATTTTTTTTTCTT------GTAATGAGAACCTTTAAGAGCTACTCTCTTT
GCAAC---TTTCAAATAGGCAATATGG-ATTATTCATTAGAGTTGCCATGCTGTATATTACATTTTTCATGACTCATTTA
TTT--TATAACTGGA--AGTTTGTGCCTTTTGACCTCC-TTTACCCATTTCTTCCATTCCCCAACCC-CACCTATAGCAA
CCACCAATCTGTGCTCTGTATTTACGAGCTTAGTT-----TTTGTTTTTTCAGATTCCGCATATAAGTGGGATCAGAGAA
TATTTGTCTCTCT--------TTTATTTCACTTAGCATAATA-CCTCAAGGTTCATCCATATCGTTACGAA--TTCAAGA
CTTCCTTCTTTTTTGTGACTGAATATCATTCCATT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------ATATACATATATTTCTTTCCTCTGTATACTCATTTTCTTTATCCATTTANNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNN---------NNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNN
>Manis_pentadactyla
GGGCAGTGGTTCACAAAGTTTTGTGTATGACCCAGT--ACGTACACATTGAAATGTTTCCC-AAAACAA---TTCTTCCT
TTT-------TTCTCAATCTCTAAATTTATTTTATTTTTTTTAATTGAGACATAATTGACATGT-AACATTATATTGGTT
TCAGGTATACTGTTAACATA---CTTCCATATTTGTAGATACTGTGAAATGAT---CACGATAGGTCTACTTAAT--ATC
TATCACC------------ACACAGTTACAGAATTGTTTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNN---------NNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNN
>Equus_caballus
GTGCAGTGGTTCTCAAAATTCGGGTTATGACCCAGT--GCACATGCACTAAAACGCTTCCC-AAAACTA---TTGCTACT
CTT------CTTTCCCATCTCTGAATTTATTTTATTGTTTCAG-CTGAGGTGTAATTGACATAT-AACATTCTATTAGTT
TCAGACGTGC----GACATAATGATTCAATATTTGTATGTATGGTAAAACGATCACCACAGTGAGTCCAGTTAAC--ACC
CATCCCA-TC----------CATAGTTACAAAATTTTGTTTCTTTTAAGTCGATCAGAACTTTTAAGGTTTACTCCCTTA
GCAAC---CTTCAAATACGCAATGCAGTGCTGTTAACTATAGTCAGTATGCTGTTCATTATATTCCTCGTGACTTATTT-
-----TAAAACTGGA--AGTTTGTACCTTTTGAGCCCC-TTCACCTATTTCACCCAACCCCCACCCCTTGCCTCTGGCAA
CTACCAGTCTATTCTCTGCATCTGTGAGTTGAGGGGTT--TTCTGATTTTTAGATTCCCCACCTAAGTGAGATCCCATGG
TTATTTGTTATCTCTATCTGACTTATTTCACTTAACATAATGTCCACAAGGTCCAAACATATTGTCACAAATTGGCGAAA
TTTCCTTCTTTTTTACTGCTGAATAGTAGTCTATT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------ACATATA-----TTTCTTTACCCATTCATTTTCTTTATCGATTCCGCTATCCATGGACAG-TTAGGTTGT
TTCCATATCTTGGCTAA---------TTCTTACCCTT---AGTAAGTATCA-CAATCCTCTGGGATATGTTG-TCATTGC
TTATATTTGATTTATTT
>Ceratotherium_simum
GTGCAGTGGTTCTCAAAATTTTGGTTATGACCCAGT--GCGTACACACTAAAACATTTCCC-AAAACTA---TTGTTACT
CTT------TTTTCCCATCTCTAAATTTATGTTACTTTTT--AATTGAGGTATAATTAACATAT-AACATTATATTAGTT
TCAGATGTAC----AATATAATGATTCAATATTTGTATATATTGTAGAATGATCCCCACAAT--GTCTAGCTAAC--ATC
CATCCACATT---------ACATAGTTACAAAATTTTGTTTTCTT----GTGATGAGAACTTTTACAATTTACTCTCTGA
GCAACTCTCTTCAAATATGCAATACTGTATTATTAACTATAGTCATCATGCTGTACATTATATTCCTCATGACTTATTT-
-----TAAAACTGTA--AGTTTGTACCTTTTGACCCCC-TACACCCATTTCACCC--CCACCACCCC--ACCTCTAGCAA
TTACCAAACTGTTCTCTGTATCTATGAGCTCGGGGTT---TTTTGTTTTTTTGATTCCACAGATAAGTGAGATCACATGG
TATTTGTCTTTCTCTGTCTGACTTATTTCACTTAACATTATGCCCTCAAGCTCCATCCATGTTGTCACAAA-TGGCAAAA
TTTCCTTCTTTTTTATGGCTGAATAATATTTTACT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------GTATATA-----TTTCTTTATCCATTCATTTTCTTTATTGATACATCCATCAATGGGCAG-TTAGTTTGT
TTCCATATCTTGGCTAA---------TTCTTATTCTT---AGT----AT-AGTAATTCACTAGGATATTTTC-TCTTTGC
TTATATTTGATTTATTT
>Sus_scrofa
GTGCAGTAC-----------------------------ACACATACACTGAGACATTTCCC-CAAACAA-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------TTCTCACTCTG---AGG----ATGAGAAATTCACTAGGATATTTCC-TCTTTGC
TTAAAAATTATTTATTT
>Bos_taurus
GTGCAGG-------------------------------GTACACACACTGACACATTTCCCCAAAACAT-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------TTCT--CTCCT---GCT----ATGAGAAGTTCACTGGGATATTTTTGTCTTTGC
CT-TATATTCCTTATTT
>Myotis_myotis
GAGCAAGGGTTCTCAAAATT-TGGTCATGACTCAGTACACACACACACTGAAACATTTCCCAAAAACAA-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------TTCCTACCTTT---ACT----GGAAGTAATCCACT-------------------
-----------------
>Rhinolophus_ferrumequinum
GTGCACAGGTTCTCAAAATC-TGGCTATGACCCGGT--GCACACACACTAAAACGTTTCTT-AAAACAA-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------TTCTTATTCTT---ACT----ATGACTAATTCACTGGTATATTTTC-TTTATTT
TTATATTTTATTTAATT
>Condylura_cristata
ATGCAAAGATTCGTAAAATTTTGGTGAGGAC-CAAT--GCTCACATACTAAAACATTTTCC-AAAATGA-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------TTCTTATTCTT---ACT----ATCAGTTGTTCACTAGAATATTT---TCTCTGC
TTACATTTGATTTATTT
>Sorex_araneus
GTGAAACACTTCTCAAAATAATGGTGATATACCAGT--GTTCAC-CAGTAAAATGTTTCTCTTATGCAA-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------TTCTTATTCTT---CCT----ATGATTAATTTGCTATGATATTTTA-TTTTTGT
TCATA-----TTTATTT
>Homo_sapiens
GCACAATGGTTTTCAAAATGCTGGTTATGACACAGT--GCACATATACTAAAACATTTCCC-AAAGCAA-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------TCCTCATCCTT---ATG----AAGGGTAATTCACTGGGATATTTTCC-CTTTGC
TTATATTTTATTTATTT



Dog485_LINE

>L1MA9_3END
------------------------------------------------------------------------------TG
AGGTGATGGATATGTTAATTAGCTTGATTGTGGTA--------ATCATTTCACAA-TGTATACGTATATCAAAACATCAC
GTTGTAC--ACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAAT------AAAGC---TGGAAAAA------
------------------------------------------------------------------
>Canis_familiaris
ATACAACGTTTAACAG--GAG--AACAAAGGACACTGTTGACTTT--TTCTTGACTTT---GAGATGAATATTTT-----
----------GGTTTTAGTGAATGCTACAGTGGCA--------ATCATATTGCAA-CATATAAA-ATAGCAGATCATCAC
ACTCTATGGGCCTTAGGTTTACACAG-TGTTTTATGTCAATTATATCTCAAT-TAAAAAAAACTAATGTAAAAAA---CA
AAAGAATATTTC---TAACGT--ATCATTAAGATGTTGGCAGCAAGTTTTTGG-TAGATATCTTCA
>Felis_catus
ATACAATGTAGAACAGAAAAGACAACAAAAGACATTGTTGACTTT--TTTCTGACTTT---GGAATGAATATTTT-----
----------GGTTTCAGCTAATGCTATAGTGGTA--------ATCATATTGCAG-TACATAAGTGTAGTAAATCATCAC
AGTGGGG--ACCTTAAGTTTACACAA-TATTGTATGTCAATTATATGCCGATTTAAGAAAATCTAATGT---------AA
AAA-AATATTTC---TACCTTTTAACATTAAGATGATGGCTTTAAGTTTTTGG-TATATACCCTCA
>Manis_pentadactyla
ATACAATGTAGAATAGAAAACAGAACAAAGGACATT-----------TCTTCGACTTT---TAA---GGTATTTT-----
----------GGTGTAAGCTAATGCTACAATAATA--------ATCATAGTGTAATTATATACATGTATCAGATCAACAC
ATTGCAC--ACTTCAAACTTACATAA-TATTGTATGTCAATTATGTCTCAACTT--AAAAAGCTAATGTAAAA-----GA
AAAGAACATTCG---TAACTTCTATCGTTAA-ATGTTGGCCAT--GTGTTCAG-TAGATACCCTTA
>Equus_caballus
TTACAATGTGGAATAGAAAAGAGAAGAAGAGAC--TCTTGACTTT--TTCTTGATTTT---AAAATGAATATTTT-----
----------GGTGTTAGCTAATGCTGTAACACTGTAATGCTAATCATATTGCAA-AATAGAAATGTATCAAATCAATGA
ACTGTAC--ACCTTAAGC-TATACAA-TGTTGTATGTCAATTATATCTCAGTTTTTAAAAAGCTAATGTGAAA-----AA
AAAGAATATTTC---TAATTTTTAGCATTAAGATGTTGGTTTTAAGTTTTTGG-TAGATACCCTCA
>Ceratotherium_simum
ATAGAATGTGAAATAGAAAG---AACAAAGGACATTGCTGACTTT--TTCTTGATTTT---AAAATGAATATTTT-----
----------GGTGTTAGCTAATGCTGTAGCAGTGTAGTGCT-ATCATACTGCAA-TATATAAATGTATCAAATCAACAA
ATTGTAC--ACCTTAAAC-TACACAA-TGTTGTATGTCAGTTATA-CTCAATTTTAAAAAAGCTAATATGAA------AA
ATGGAATATTTC---TAACTTTTTTCATTAAGACATTGGTTGTAAGTTTTTGG-TAGATACCCTCA
>Sus_scrofa
ATAAAATGTGGGGGAAAAAAGAGAAAAGAGGAC-TCATTGACTTT------TTACTTT----------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AA
AATGAGAATTTT---TACCTTTGATTATTAAGATGCTCATTGTAAGTTTTGGG-TAGATAACTTTA
>Bos_taurus
ATAAAATATGGAACAGAAAGGAGAAAAGAGGACATCACTGACTTT-------GACTTC----------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AA
CATGAGTATTTT---TACTTTTTAT-ATTAAGATGCTGGCTATAAGTTTTTGG-TAGTTACCTTAA
>Myotis_myotis
GTACAAGACAGAACAGAAAAGAGAACAAAGGATATAATTTACTTT--TTCTCGAGTCT----------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AA
GATGAATATTTC---TATCATTTATTATTAAGATGCTGGCTGTGA--TTTTGG-TATATGTCCTCA
>Rousettus_aegyptiacus
GCACAATGTGGAGCAGAAAAGAGGACAAAGGAAA------ACTTTCCTCTTTGACTTT----------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AA
AATAAATATTTC---TAATGTTT---ATTAAGATGTTGGATATAATTTTTTTGGCACTTACCATAA
>Condylura_cristata
ATACAATGTAAAATAGAAAG---AACAAGGGACATTTCTAACTTT-CTCCTTTACTAT----------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AA
AGT-AATATCTC---TAGTTCTTTTCATTAACATATT------AAGTTTTTGG-TAGATGCCCTCA
>Sorex_araneus
ATAAAAGAT-GAACAGGAAGAATAACAAAGGACACTACTGACTTT--TTTCTGATTTT----------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AA
AATAAAGA-GTC---TAACTTTCATCATTAGTGTGTTGGCTATAACTTTTTGC-TGGATAATCTCA
>Homo_sapiens
GAAATAAATAGAATGGAGAAAAAGAAAAAG-------TTAACCTT--TTGTTTACTTT----------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AA
AATGAGTATTTC---TAACTTTTATTATTAAGGAGTTTGCTGTAAGTTTTTTGCTAGAAACCTTCA



Dog497_LINE

>L1_CARN7_3END
-------------------------------------------------------------------------------T
TTTTTTATTTGAGTATAATTGACATACAATGTTATATTAGTTTCAGGTGTACAACATAGTGATTCGACATTTGTATACAT
TGTGAAGTGATCACCACAATAA-GTCT-----AGTTACCATCTGTCACCATACAANGTTANTACAATATTATTGACTATA
TTCNCCATGCTGT-------------------------------------------------------------------
--------------------------------------------------------------
>Canis_familiaris
GGCAGGTTTTAAGGTTTTTCTCAAAGCCCTCTCTATTTTGTGTATTTTATCA---GTATATTTATGTATG---TATGTAC
ATTTTTATTGGGGTATAATTGACATACAATGTTATTCTAGTCTCAGATATATAACACAATGAATTGAGATTTGCATACAC
TGTGAAATGATCACCACAGTAAGGTCT-----AGATAACATTTTTCACCATACTTCCTTACAG--ATTTTTTCTTGTG--
----------------TATTTATTTTATTGGATCTTGTATGTTTATTTTAATTAATAAACATTATTTAATTATTT---AA
TTAAAC---TTTTGGGGGGA----GGCAATTGTAGATTCACATGC----AATTGTAAGAAAT
>Felis_catus
GGCAATTTATAAAGTCTTTCTCAAAGCTCTCTATATATTGTGTATTTTATCA---GTGTATTTATGTATG---TATATGT
GTTTTTATTGAGGTATAATTGAC-TACAACATTATCTTAGTCTCAGGTGTGGAACACAATGAATTGAGATTTGCATATAT
TGTGAA---ATCACTACAGTAA-GTCT-----AGTTAACACTTTTCACCATACATAGTCATAAT-TTTTTTTCTTGTG--
----------------TATTTGTTTTATTGAAT---------------------------------------CTT---CT
ATATGTATTTTTTGGAGGTAATTGGGTTATTGTAGATTCACATGT----AATTGTGAGAAAT
>Manis_pentadactyla
AGTGGCTTATAAGGGTTTTCTCAAAGTCTTCTATATTTTGGGTATTCTGTCA---GTCTATTTATATTTT----------
-----TGTTGAGGTATAATTGATAAATAACATT------GTTTCAAATGCACAACATAATAATTTGATGTTTGTATGTAT
TGTAAAATGATCAC--CATTAA-GTCTAGGTAAGGTAACATCGGTCATCATACATAGTTACAAAATTTTTTTTTCATG--
----------------TGTTGCTTA-------------------------------------------------------
-----GAGTTTTGTGGGGGA----GGTATTTGTAGATTCACATATCAAAAATTCTAAGAAAT
>Myotis_myotis
GGCAGTTTATAAGGTCTTTCTGAAAG---------TGCTGTGTATTTTATCA---GTTTATTTATGTTTT----------
-----TATTGAGGTATAATTGACATAGCAT----TGTTAGTTTCAAGTGTGTAACATAACGATTCCAGATTT-TTTATAT
TGTGAAATGATCATTTCAGTAA-GTCT-----GGTTAACCTCCATAACCATATATAGTTACAA--ATTTTTTCTTGTG--
----------------TATTTATTT-----------------------------------------------TTT---AA
CTAAACA--TTTTTGGGGTA--------GTTGTAAATTCACATGC----AATTTTAAGAAAT
>Rousettus_aegyptiacus
AGCAGTTTATAAGATCTTTATCAAAGCCCTCTATATTTTGCGTAT----------TTATGAGTATGTTTT----------
-----TATTGAGGTAT-ATTGACATATAACATTGTGTTAATTTCAAGTGTACAACACAATGATTCCATGTTTGTGTATAT
TTTGAAATGATCACCACAATAA--TCT-----ATTTAATATCCATTACTATATATTGTTACAAAATCTTTTTCTTACG--
----------------TATTAATTT-----------------------------------------------TTT---CA
TTAAAAAT-TTTTGGAGGTA--------ATTGTGCATTCACATGC----AATTGTAAGAAAT
>Sus_scrofa
GGCTGTTTATAAGGTCTTTCTCAAAGCCCTCCATATTT------------CA---GTGTGGTTATTTTTT----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AA
TTAAACTCTTTTTTGAGTTG---------CGGTCACTTCTTGAGC----AGTTATAAGAAAT
>Bos_taurus
AGCAGTTTATAAG----TTCTCAAAGCCCTCTATATTTTGTGTATTTTTTCA---GTGTAGTTAATTTTT----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AA
ATAAAAATATTTTTGAGTTG---------CTATAGATTTATGTTC----AGTTGTAAGAAAA
>Equus_caballus
GGCAGTTTATAAGTTCTTTCTCAAAGCCCTCTATATTTTGTGTATTTCGTCA---GTCTGTTTATTTTTT----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AA
TTAAACCTTTTTTTGAGGTA--------ATTATAGATTCACGTGC----AGTTGTGAGAAGT
>Tapirus_indicus
GGCAGTTTATAAGTTCTTTCTCAA----CTCTATATTTTGTGTATTTTATCA---GTGTATTTATTTTTT----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AA
TTAAACTT-TTTTTGAGGTA--------ATTGTAGATTCATGTGC----AGTTTTAAGAAAT
>Condylura_cristata
ATCAGTTTAGAAGGTTTTCCTTAAAGCACTTAAT-TTTTGCATATTTTGTTG---TTATACTTACTTTTT----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AG
C--AACTT-TTTTTGAGATA--------ATTATAGATACACAAGT----AATTGTAAGAAAT
>Uropsilus_gracilis
AACCATTTATAAAGTCT---TCAAAATCATCTTTATCATGTACATCCTATCA---GTATACTTTTTTTCA----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------TT
T-AAACTTTATTTTGAGGTT--------ATTGTAGATTTACATGT----AGTTGTAAGAAAT
>Homo_sapiens
GACAGTTTACAAGGTATTTCTCAAAGCCCTCTATATTTTGAGTACGTTATCA---GTGTTTTATTTTTTA----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AT
T-AAGCTT--TTTTGAGGTA--------ATTATAGATTCACACAC----AGTTGTAAAACAT



Dog504_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
------------TTTTTCCAGCTTTATTGAGGT-----------ATAAT-------TGACAAATAAAAATTGTATATATT
TAAGGTGTACAACGTGATGTT----------TTGATATACGTATACATTGTGAAATGAT------TACCACAA-------
-------------TCAAGCTAATTAACATATCCATCACCTCACATAGTTACCATTTTTTTGTGTGT--------------
------------------------------------------------------------------
>Canis_familiaris
CACCCCC--CTGACTACTTAAGGGTAGATGAGTTCTTTTATTTTCTTCCTCC------GGCTGACGCCCTG---ACTCTT
AACCACTT---TTTTTTGGTCTTTTTGTGTTGT-----------TTTGTTTTTTGGTAAGAGATAAGGTTAGCATTTATT
TA---TTTATTGCATGTTTTTGCATCTTTGATTTTTTTCCAATTTTATTGAGGTATAATGGACAGAACAACAT-------
-------------TCTATCAGTTTGAGGTATACA-------GAGGAATGACTAGATTT-----------GTCCTTCACTG
TTT---AGAAAAGGTAATGACAGT-AGAGTTCTTCATGAAAAA-ATAGAGTA-------CTCA-AA
>Felis_catus
CTCCCCT---AGACTGCTTAGGTGTAGATGAATTCTTTTATTTTCTTCCTCCTCCTCCTGCTGAGGCCCTG---ACTCTT
CACCAGCA---CCCCC----ACTTTTTT--------------------TTTTTTGGTAAGAGATAGGATTAGCATTAATT
TA---TATATTTCATGTTTTTACAC------TTTTCCCCCAATTTTACTGAGATATAATGGACA-AACAACAC-------
-------------T----AAGTTTAAGGTGTACA-------GAGCAATGACTTGACTT-----------GTCCTTCACTG
TTT---AGTGAAGATAATGACAGT-AGAGTTCCTCGTGAAAAA-ATAGGGTA-------TTCACAA
>Phataginus_tricuspis
NNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNN
NNNNNNNN---NNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATT
TA---TTTATTTCAATTTCTTGCATCTTTTA--TTTTTCCAATTTTATTGAGATATAATCGACA-TATAATAC-------
-------------TGTGTAGGTTTGAGGTGTATA-------GTATAATGACT----------------------TCAG--
------AGTGGAGGTAATGACAGC-AGAGTTCTTCATGAAAAA-ATAGGGCA-------CTCATAA
>Condylura_cristata
CGCTCTTC-CAAACTACTTCCGTATAGACCAATATATTAATTTTCTTTCTCT---TCCTGCTAAGTCCCCC-----TCTT
AGCCATAG---CTCCT----CCTTTTTGGGGGG-----------AGGGTGTGAGGGTAAGAGATAAAATTTGGATTTATT
T-----------CATTATTTTGTATCTTTTATTTTTTTTCAGTGTCATTGTGTTATTTC------TATAACAC-------
-------------TGTATGAACTTAAGGTATAGA-------GCATAATAACT-----------------TACCTTCATCC
TTA---AACAGAGATAATGACAGC-AGTATTATTTGTGAAAATAATTGGACA-------CTCATTG
>Uropsilus_gracilis
CATTCCCTACAAAGTATTTATGTATAGAGTAATACTTTCATTTTCTTTGTCC---TCTTGTTAAGGTCCTG---ACTCTT
AACTACA----CACTC----CCTTTGAGGGTGGTGGCAGGGGTAGGGGTGGGGGGAGAAGAGATAAAATTAGAATTTATT
T-----------AGATTTTTTGTATCTTTTATTTTTCT--ATTTTTAT--TACTATTTA------TATAACATAATGAAT
TGACCTTAATTAACATGTAAGTTTAAGGTGTAGT-------GTGTATTGACT-----------------TATTTTCACCC
TTA---AGTAG---TGATGACAGC-AGAGTTATTTGTGAAAAA-ATACGACA-------CTCATAA
>Sus_scrofa
TACCCTC-----------------CAGATAAATTTTTAAATTTTCTTCCTCC---TCCTGCTAAGACGCTG---ACTCTT
CACCCTTT------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------ACTGGAGATAAAGACAGC-AGAGTTCTTCCTAAAAAAAATAGGACATAGGACGTACATAA
>Vicugna_pacos
CACCACA-----------------CAGACAGATTCTTTAATTTCCTTCCTCC---TCCTTCTAAGGCTCTG---ACTCTT
CAGTCTTA------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------ACTAGAGAT-ATGACAGT-AGAGTTCTTCATGAGAAA-ATAGGACC--------TCATCC
>Equus_caballus
CACCCCCT-CAGACTACTTAGGTGTAGATAAATTCTTTCATTGTTTTCCTCC---TGCCACTAAGGCCCTG---ACTCTT
CACCCCTA------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------AGTGGAGATAATGATTGT-AGAGTTCTTCATGATAAA-ATGGGATA-------CTCATAA
>Ceratotherium_simum
CACCCCCT-CAGACTACTTAGGTGTAGACACATTCTTTCATTTTCTTCCTCC---TGTTGCTAAGACCCTG---ACTGTT
CACCCTTA------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------AGTGGAGATAATGACTGC-AGAGTGCTTCATGAAAAA-ATAGGACA-------CTCATAA
>Myotis_lucifugus
CACCCCC---------------TGCAGACAAAT-CTTTCATCTCCTTCCTCT-CATCCTGCTAAGGCCCCG---ACTC--
-----CTC------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------ACTGGAGAT--TGACAGC-AGACTTCTTCTCGAGAAA-GCAGGACA-------CTCAGAA
>Rhinolophus_ferrumequinum
CATCCCC---AGACTACTTAGGTATAGACGAATTCTTTCATTTTCTTCCTCC---TCCTGCTAAGGCCCTG---ACTCTT
CATCTTTA------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------ACTCCAGATAATGGCAGC-AGACCTCTTCATGAAAAAAATAGGGCA-------CTCGTAA
>Homo_sapiens
TACTGCA--CAGACTGTTGAGCTGTGGATGAACTCTTTAATTTTCTTCCCCTTCCAG-CTATAAGGGCCTG---ACTCTT
CACTTTTG------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------GGTGGAGGTAATGACAGC-AGAGTTATACAGGAAGAA-ATAGAACA-------CTCACAA



Dog507_LINE

>L1_CARN7_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------TTTTTTTATTTGAGTATAATTGACATA
CAATGTTATATTAGTTTCAGGTGTACAACATAGTGATTCGACATTTGTATACATTGTGAAG-TGATCACCACAATAAGTC
TAGTTACCATCTGTCACCATACAANGTTANTACAA-TATTAT-----TGACTATATTCNCCATGCTGTACATT-------
ACATCCCCATGACTTATTTA-TTTTATAACTGGAAGTTTG----------------------------------------
---------------------------
>Canis_familiaris
TCTCTAATACAGATACTCTGTCTATAA-GAAACAGAGAAAGAAATTATGAT---ATCT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------TT-TTTT---TAATTTGATACC
AAATCTTTTTAGGTACCAAAAATTTGGTACCAAACTTTGATACCAAAGTTGTTTTTTTAAACTGCAATATAATTGGCATA
CAAGATTATATTAGTTACAGAGGTACAATATAGTGGTTTAATATTTGAATGTATTGTGAAACTGTCCACCAGAATAAGTC
TAGTCAGCATCTATCACCTCATCTCACTACAACATGTTTTATTTTTGTGAT---AATTTTTAAGATCTACTCTTCTAGCA
ACTTTCAAATATACAATACAGTATTATTAACTACACTTA----ACCTTTTGTTT---CTAAAGATCTGAATATAGATAAT
GAGATAATTTTAACCATATCTATAAAA
>Felis_catus
TTTCTAATACAGATACTGTGTCTTTAG-AAGACAGA--AAGAAATTACAAT---ACCTTTTCTTTTTTAATTTTTTAAAT
CAATGTTTATTTTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAGCATGAGCAGAGGAGGGGCAGAGAGACAGAGG
GAGACACAGAATCCGAAGCAGGCTCCAGACTCCGAGCTGTCAGCACAGAGCCCAATGTGGGACTTGAACTCACAAACTGC
AAGATCATGACCCGACCTGAAGTCAGATGTTGAGCCACCCAGGCACCCCTACAATATCTT-TTTT---TAACTTGATACC
AAATCTTT-------------------------------------AAGT--TTTTTTTTAATTGAAATATAATTGACAAA
TAACATGATATTAGTTACTGGTATACTATATATTGGTTCAATATTTG----TATTGTGAAACTGTT-ACTACAGTAAGTC
TAATTAACATCCATCACCTCACATCATTAC--ATT-TTTTATTCTTGTGAT---AACTCTTAAGATCTCCTCTTTTAGCA
ACTTTCAAATATACAATACAGTATTATTAACTATAGTTA----ACCTCTTGTTT---CGAAAGATTTGAATATGGACTAT
AGGATAATTTTAACCGTATCTATAAAA
>Manis_javanica
TCTCTAATACCAGTACTGTGTTTTTAA-GAGACAGGGAAAGAAAGTGCAAT---TTCT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------TTCTTTT---TTACTTGGTGCC
AAGTCTTT-------------------------------------AAG--ATTTTTAAAAACTGAGATATAATTGACATC
TAACATTGTATCAGTTTCAGGCATACAATATAATGATTTGATATTTGTATATATTGTGAAACT-ATCACCAGAATAAGTC
TAGGTAACATCCA------CACAGAGTTACAGAGTATTTT-TCCTTGTGATGAGAACTTTTAAGA-CTTCTCTTTTAGTA
ACTTTCAAATATACAGTGCAGAATTATTAAGTAGATTTC----ATCTATGGTTC---CTAAAGATATGAATATGGATTTC
AGGATAATTTTAACCAGATCTCTACAA
>Sus_scrofa
TCTGTAATACTGATACTCTGTCTTGAG-GAGACAGAGGAAGAAATTCCAGT---ATCTTTG-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------GG-TTTT---GAACTTGATGCT
AAATCTTT-------------------------------------AAGATTTTTTTAAAAATTCTAATAAAATTGACATA
CAACATTATGTTAGTTTCAGATTTCCAACATAATGGTTCATTATTTGTGTATATTGTGAAA-TGATGACCAAAATAGGTC
TAGTTAACATCCAGCATCCAACATAGTTATGTAA--TTTTTTTCTTATGATGAGAACTTTTAAGATCTACTCTTTTAGCA
ATTTTCAGATATACAATACAGTCTTATCACCTGGAGTTA----ATCTATTGTTT---CTAAAGATTCGAGTATTGATTAT
AGTATAATTTTAACCAGATTGCTAGAA
>Bos_taurus
TCTCTCTTATGGATACTCTATCTTTAG-AAGACAAAGATAGAAGTTCCAGT---GTCTTT--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------TT-TTCT---CAATTTGATGCT
AAATCTTT-------------------------------------CAGG--TTTTTTTTAATTAAGATA------ATAGA
TAACATTACATTAGTTTCAGGTGTACAACATAATGATTTGATATTTTTATATATTGTGAAA-TGATCACCAT-GTAGGTC
TAGCTAACATCCATCATCAAACATAGTTACATAAT-TCTTTTTCTTGTGATGAGAATTTATAAGATCTGTTCATTTGGCA
ACTTTTGAATAGGCAATATGGTATTATTAACTGGAGTTA----ATCTATTATTT---CTAAAGGTTTGAATATTGATTAT
TGTATAATTTTAACCAGATGGATTAAA
>Equus_caballus
TCTCTCATATTGACACTCTGTCTTTAG-AAGACAGAAAAAGAA-TTGTAAT---ACCTTTT-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------TT-TTTT---TTACTTAATGCC
AAATCTTT-------------------------------------AAGA--TTTTTTTAAATTGACATATAATTGACATA
TAGCATTATATTGTTTTCAGATGTGCAACGTAATGATTCATTGTTTGTATATATTGCAAAA-TGATCACCACAATAAGTC
T----AACGTCCATCATTAGATGTAGTTACAAAAT-TTTTTTTCTTGTGATGAGAAGTGTTAAGATCTATTCTTTTATCA
ACTTTCAAATATACAATACAGTATTATTAAGTATAGTTA----ATCTATCATTT---CTGAAGATT-GAATGTTAATTAG
AGGATAATTTTAACCAAATCTGTAAAA
>Ceratotherium_simum
TTTCTAATATTGATTCTCTGTCTTTAG-AAGACAGAGAAAGAA-TTGCAAT---GTCTT---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------TT-TTTT---TTAGTTAATGCC
AAATCTTT-------------------------------------AGGA---TTTTTTTAATTGAGATGTAATTGACATA
TAGCCTTATATTAGTTTCAGGTGTACAACATAATGATTCAATATTTGTATATATTGTGAAG-TGTTCACCATCGTAAGTC
T----AACATCCATCATTATACATAGTCACAAAAT-TTTTTTTCTTGTGATGAGAACTATTAAGATCTATTCTTTTAGAA
ACTTTCAAATATATAACACAGTATTATTAACTATACTTA----ATCTGTTGTTT---CTGAAGATTTGAATATTGATTAG
AGGATAATTTTAAAGAGATCTATAAAA
>Myotis_myotis
TCTCAAATACTGGTACTCTGTCTTTAG-GGGACAGAGAAAGAAATTGCAAT---ATTTG---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------CT-CTTT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------CCAAAGGTTGGAATAGTGACTGT
AAGATCATTTGGACCAGATCTATGAAA
>Pteropus_vampyrus
TCTCTAATACTGATACTCTGTCTTTAG-GAGACAGAGAAAGAAATTGCAAC---ATCTG---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------TT-GTTT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------CCAAAGATTTGAGTA--------
---------------------------
>Condylura_cristata
TCTCTAATACTGAGAC--TGCCTTTCGTGGAACAGAGATAGAAATTGCATT---ATCAG---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------TT-GTTT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------CCAGCGATTTGAAGGTTGATTAT
AAAATGATTTTAA-AAGAGCCATCGAA
>Uropsilus_gracilis
TCTATAATATTGATAA--TGCTTTTAG-GGGACAGAGAAAAATATGGCACT---AT--A---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------TT-TTTT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------CTTAAGATTTGAACATTGACTAT
AGGATGATTTTAGAAAGATCCATAAAA
>Homo_sapiens
TCTCTGAT------ACTCTGTCTTTAG-GGGACAAAGAAAGAAATTACAAT---ATCTA---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------TT-GTTT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------CCAAAGAGTTGAGTATTGGTTGT
AGGATCATTTGAACCAGATCTGCAAAA



Dog508_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
------ATAAGTTCTGGAGATCTAATGTACAGCATGGTGACTATAGTTAATAATACTGTATTGTATA-CTTGAAATTTGC
TAAGAGAGTAGATCTTAAGTGTTCTCACCACACACAAAAAAATG----GTAACTATGTGAGGTGATGGATATGTTAATTA
GCTTGATTGTGGTAATCATTTCACAATGTATACGTAT-ATCAAAACATCACGTTGTACACCTT----AAATATATACAAT
TTTTATTTGTCAATTATACCTCAATAAAGC----TGGAAAAA--------------------------------------
--------------------------------------------------------------------------------
-----
>Canis_familiaris
TATCTATTGAGTACCTACGAGGTGCTGGGGGAAATGCA-GTGACCAA------TACAGCC---AGAGTC------TGCCT
TCG-------------GGGATGTACTGTACAGCACGGTGACTATAGTA---AATACTGCATTGCATA-TCTGAAAGTTGC
GAAGAGAATAAATCATAAAAGTTCTCATCACAAAAA----AACATTCTGTAACTATGTACGGTGATGG--ATGTTAACTG
GACTTATTGTGGTGATCATTTTGTAATATATATGAAT-ATCAAATCATTATGTTGTACGCCTGGAGCAAATGAATGTAA-
TGTTGTATGTCAATTATACTTCAATAAAAA------AAAAAA----------AGAAGAAAGTTGAGGAAATTAAAAAAAG
AAAAAC-------AAAAACTCTGCCTTGG---AA--TTTACATTCTAGTTGGAAGAGATAAAG-GTAGCAAATAAACATT
ATCTA
>Felis_catus
TAT-TATTGAGTACCTACTAGGTGCTGGGGGAAATGCA-GTGAACAA------CACAGCC---AAAATC------TGCCT
TCG-------------GGGATGTAATGTACAGCACGGTGACCATAGTT---AATGCTGTATTGCCTA-TTTGAAAGTTGC
TAAGAGAATAAATCTTAAAAGTTCTCATCACAAGAA----GACATTCTGTAACTATGTATGGTGACGG--ATGTTAACTA
GACTTACTGTGGTGATCATTTTGTAATATATACAAATAATCAACTCATTATGTTGTACACCTG----CAACTCATGTAA-
TGTTGTATGTCAATTATACCTCAATAAAAA------AAAAAA------------AAGAAAGTTGAGGAAATTAAAAACAA
AACAAACAAA---AAAACCTCTGCCTTGG---AA--TTTACATTCTAGCTGGAAGAGACAAGG-GTAGCAAATAAACACT
ATCTA
>Manis_pentadactyla
TATTTATTGAGTACCTGCTAGGTGCCGGGAATAATGCA-GTGAACAG------TACAATC---AAAATATC----TGCCT
TCT-------------GGGATGTAATGTACAGCATGGTGACTATAGTTAATAATACTGTATTACATA-TTTGAAAGTTGC
TAAGAGAGTAAATATT------------CACAAGAAAAA-AACATTCTGTAAC--TGTATACTGACGG--ATGTTAACTA
GACTTACTGTGGTGATCAATTTGTAATATATACAAAT-ACTGAATCATTCTGTTGTACACATG----AAATTATTATAA-
TGTTGTATGTCAATTATACCTCAATAAAAAATTTTTTAAAAA-----------GAAGAAAATTGGGGAAAAAG-------
-------------AAAATCTCTGTCTTGT---AA--TTTATATTCTAGTTGAAAGAGACAAAGTGTAGCAGACAAACACT
ATGTA
>Sus_scrofa
TATTTATGGAGTACCTATGAGGTGCTGGGGAAAATGCA-GAGAA---------TATGGTC---AAAATCTC----TGCCT
TCA-------------GGGATGTAATGTACAGCATG--GACTATGGTTAACAATACCGTGTTGCATA-TTTGGAAACTGC
TAAGAGAGTAAATCTTAAAAGTTCTCATCACAAGAAGA--AAAGCTCTGTAACTATGTATGGTGACGG--ATGTTAACTA
GATTGACT---GTGATCATTTTGTAATGTATACAAAT-ATTGAATCCTTATGTTGTATACCTG----AAACGAATATCA-
TGTTGTATGTCAATTATACTTCAATAAAAA------TAAAAATAAAAAAAGAAGAAGAAAGTTGAGGAGATTAAAAA---
---AAA-------AAAATCTCTGGCTTGG---AA--TTTACATTCTAGTTGGAAGAGACAAAATGTGGCAAAT--ACACC
CTGTG
>Bos_taurus
TATTTATTGAGTACCTACTAGGTGCTGGGGAAAATGCA-GTGAACAA------TACAGTG---AGAATCTC----TGCCT
TCA-------------GGGATGTAACGTACAGCATGGTGATTGTGGTTAATAATACTGTATTGCATATTTTGAAAGTTGC
TAAGAGAGTAAATTTTAGAAGTTCTCATCACACGAAA---AAAGCTCTGTAACTATGTATGGCGATGG--ATGTTAACTA
GATGTATTGTGGTGATCTCTTTGTAATGTATACAGAT-ACTGAATCATTATGTTGTACATCTG----AAACTAATATAA-
TGTTGTTTGTTAATTATGCTTCAATAAAAA------TAAAAA---ATAAAAGAGAAGAAAGTTGAGGAGATTGAAAA---
-------------GAAATCTCTGGCTTGG---AA--TTTACATTGTAGTTGGAAGAGAGAAAGTGTAGATAATATACACT
CCTCA
>Equus_caballus
TATTTACTGAGTACTTACCAGGTGGTGGGGAAAATGCA--CAAACAA------TACCATC---AAAATCTCCCTTTGCTT
TCA-------------GGAAT--AGCCTGCAGCATGACAACTACAGTTAACAACACTGTATTGCACA-TTTGAAAGTTGC
TAAGAGATTAAAGCTTCTAAGTTTTCATCAGAAGAAA---AAAATTCTGTAAC--TGTGTGGTGATGG--ATATTAACTA
GACTTAGTGTGGTGGTCATTTTGTAATAGATAGAAAT-ATCAAATCATTATGTTATACACCTG----AAACTAATATCA-
TGCCATATGCCAGTTACACTTCAATAAAAA-------AAAAA-----------GAAGAAAGTTGAGAT------------
-------------AAAATCTCTGCCTTGG---AA--TTTACATTCTAGTTGGAAGAGACAAAGTGTAGCAAATAAACAC-
-TGTA
>Ceratotherium_simum
TATT-------TACCTAGCAGGTGCTGGGGAAAATACA-CTGAACGA------TACAATC---AAAAGCTCTTTTTGTTT
TTG-------------GGGATGTAATGTGCAGCATGGCAACTATAGTT---AATACTGTATTGCATA-TTTGAAAGTTGC
TAAGAGAGTAAAGCTTATAAGTTTTTGTGAGAAGAAGAATAAAATTCTGTAACTATGTGTAGTGACAG--ATGTTAACTA
GAC--ATTGTGGTGATCATTTTGTAAC--ATACAAAT-ATCGAATCATTATATTGTATACCTG----AAACTAATATAA-
---TGTATGTCAATTATACTTCAATAAAAA------AGAAAA--------GAAGTAGAAAGTTGAGGAGATAA-------
-------------AAAATCTCTGCCTTGG---AA--TTTACATTGTAGTATGAAGACACAAAGTGTAGCAAATAAACACT
ATGTA
>Myotis_myotis
TATTTACTGAGTACCTACCAGGTGCTGGGGAAAATGCA-GTGAATAA------TACAATT--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------AAAATCTCTGCCTTGG---AA--TTTACATT-------ACATAGACAAAGGTTAGCAAATAAACACC
ATATA
>Rousettus_aegyptiacus
TATTTATTGAATACATACTAGGTGCTGGGGAAAATGCA-GTGAACGT------TGCAGTC--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------AAAATCTCTGCCTTGG---AATTTTTTCATCATAGTTAGAAGAAACAAAGTGTAGCAAATGAACACT
CTGTA
>Scalopus_aquaticus
TATTTATGAAGTATACCTACTAGGTGCTGGAGAACATGAATGAACAA------CACAATC--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------AAAATCTCTGCCTTGG---AA--TTTACATTCTAGTTGGAAAAGACAAAGTGTAG----TAAACACT
GTGTA
>Erinaceus_europaeus
TATTTAGTATCTACTTACTAG----CAGAGAAAATGCA-GTGAACTGCATTTCTGTAGTT--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------AAAATCGCGACTTTAG---AA--TTTACACTCTAGCTGGAAGAGACAAAGTACAGCAAATAAATAGA
ATGTA
>Homo_sapiens
TATTTATTGAGCAC--------------------TGTG-ATTAACAA------TATAATC--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------AAATTCCCTGCCTTGG---AA--TTTACATTCCAATTCAAAGAGACAAACTGTAAC-AATAAACACT
ATGTC



Dog511_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
----------------------------------AGTAGAATGGTGGTTGCCAGGGGCTGGGGG----------------
--GTGGGGGAAATGGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCT---GGAGATCT
AATGTACAGCATGGTGACTATAG-TTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTT
CTCACCACACACAAAAAAAT-----------------------GG----TAACTATGTGAGGTGATGGATATGTTAATTA
GCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTA
TTTGTCAATTATACCTCAATAAAG-CTGGAAAAA----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>Canis_familiaris
TTTCAATGCATTAATGGGATATATTTTTTATGACTGT----------------------------------------TTT
AAAAATCCAT---AAGAAATCCACATTTTCT------------GAGATGGA----GGGTGAGGG----------------
--G-GG--------------------------------------------------------------------------
--------------------------AACACTGGTGTATAATACA--GGAAAGTTGCTAAGAA--TAAATCCAAAGAGTT
CTCATCACAGGGAAAAAAAAGCCAAACTTT-------TTTT--TT----TGTCTATAGTAGGTTATGG------------
---------------------------ATATA--T--GTCAAATGCTTTTGCTGTACACCTTAAACTCATACAG-TGCTA
TATGTTAATTATATCTTAAT-GAA-CT---AAAAAA----AAGAAATCCATATTTTCC---CTTGCCATAAGTGCTTGGT
AAAAG---------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------ATG
AAATAGCTC-----TCATATTGAGGGAA
>Felis_catus
TTTCAATACATTAATAGGATGTACT-TCTATGACTAT----------------------------------------TTT
AAAAATCCAT---AAGAAATTTACATTTTAT------------GAGGTTG-----GGGCTGGGG----------------
--T----GGAAATTGCGTGAAGGTTGTCAGGAGGTACAAACTTCCATTTAT--AAGATAAATAAGTGGT---AGTAATGT
AATGTACAACATGATGCCTATGG-TTAACACTGCTGTATAATATA--TGAAAGTTGTTAACAGAGCAAATCCTAAGAGTT
CTCATCACAAGGG-AGAAAAACCT-------------TTTT--TT----GGTCTAAATGAGATGATGG--ATGTTAACGA
AGCTTTCTGTGGTGATCCTTTCACAATATATA--T--GTCAAATCATTATGCTGTACACCTTAAACTTATACAG-TGCTA
TATTTCAATTATATCTCAAT-AAA-CT-----AAAA----AAGAAATCCACACTTTTA---CTTTCCATAAGTGACTAGT
AAAAA---G-----------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------GTA
AATTAACC------TCATAATGAAGGAA
>Manis_javanica
TTTCAGTATATTAATAGGATATACT-TTTATGATGGA----------------------------------------TTA
AAAAATACAT---AAGAAATCCACATTTTCT------------TATGTGAG----GGGAGAGGGAATTGAATGAAAGTGG
TC-AAAAGGTAAAATTTTCAAAAAGGTCAAAAGGCACAA--CAAAAGGTACAAAAGGTAATTATACATTACTAGGGATGT
AATGTATAACATGATGACTATAG-CTAATACTGCTATATGGTATATTTGAAAATTGTTAAGAGAGTGAATCCTAGGAGTT
CTCAGCA--------------TCATTTTTT-------TCTT--TTACTGTATCTGTATGAGATAATGG--ATGTAAACTA
GACATATTGTGGTGATCATTTCACTATATATA--T--GTCAAATCATTATGCTGTATATCTTAAACTTATATGG-TACTA
-ATATCAATTTTATCTCAAT-AAAACTG-AAAAAGA----AAAAAATCCACATTTTTG---CTTTCCATATCTGTTTGGC
AAAAGCTGAACAAATCACAATCATTATATAAATTAATCATGGGGATGAAAGTATAGCACAGAGAATATAGTCAATAATTC
TGTAACATCATTCTATGTTGATAGTAACCACAATACTTTAGGTGAGCATCTAATAATGTATATGACTGTTGAATCACTAT
GTTGTATACTTGAAAGCAATATGATATTGTATATCAACTATACTTCAATTAAAATTAATTAATTTAAGAAAAGCTGAATG
AAATACCTC-----TCACGGTGAGGGGA
>Sus_scrofa
CTTCAATACA-TAATAGGATATACTTTTTAGAACTGT----------------------------------------TTT
AAAAATCCAT---AAGAAATCCACATTTTCA------------GAGGTGG-----GAGTGAAGA----------------
--G-AGAGGGAATTGGATGAAAGGTGTCAAAGGGTACACA-TTACAATTTT--AAGATAAATAAGTGCT---AAGGATGT
GATGTACAACATGATGACTATAG-TTAACACTGCCGTATGGTGTATTTGAAAATTGTTAAGAGAGGAGATCCTAAGAGTT
CTCATGACAGGGATAAAAATATTTTTTTCTTTTTTTCTTTT--TT----TGTCTATGTGAGATGATGG--ATGTTAACTA
AACTTATTATGGTGATCATTTTACAATATATA--TAAGTCAAATCATTATGCTGTATACCTTAAGCTTATACAG-TGCTG
TATGTCAATTGTATCTCAGT-AAA-CTGAGGGAAAA----AATAAATCTATATTTTTG---TTTTTCCTATCTATCTGGT
AAAAGCTGG-----------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------ATA
GAATACTTC-----TTGAAGTGAGGGAA
>Bos_taurus
CTTCAATGCATCA-TAGAATGTGCTTTATAAGACTGT----------------------------------------TTT
AAAAATCCAT---AAGAAATCCACATTTTCA------------CAGGTGG-----AGGCTGGGA----------------
--G-AAAGGGAATTAGATGAAAGGGGTCAAAATGTTCACAATTTCAGTTAT--AAGATAAGTAAGTACT---AGGGATAT
ACTGTGCAACATGAAGACTAAAA-TTAACACTGCTATATGGAGTATTTCAAAATTA-----AAAGTAAATCCTAAGAGTT
CTTGTGACAAGAAAAAAAAATACTTTTTTTTCTTCTTTTGTGGTG----TGTCTATATGAAATGATGA--ATGTTAACCA
GACGTTTTGTGGAGATCATTTTACAGTATATT--TGAGTCAAATCATTGTGCTGTACACCTTAAATTTACACAG-TGTTG
TATGTCAATTATATCTCAAT-AAA-CTGAGGGAAAAC---TAGAAATCCACATTTTCA---TTTTCCACATCTTTCTGGT
AAAAGCTGA-----------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------ATG
AAATACTGTACTGATTGTAGTGAGGGAG
>Equus_caballus
TCTTAATGCATTAGTAGGATGTACTAGTTGTGATTGT----------------------------------------TTT
AAAAATCCAT---AAGAAATCCACATTTTCA------------GAGGTGG-----GGGTGAGAG----------------
--G-AGAGGGGATTGGATGAAGGTGATCAAAAGGTACAAACTTCCAGTTAC--AAGATAAATAGGTACT---AGGGGCGT
AATCTACAAC---ATGGCTATAGTTTAACGCTACTGTATGGTATATTTGAAACTTGTTAAGAGAGTAAATTCTAAGCGTT
TTCATAACAAGGA-AAAAATACTTTTT--CTTT----TTTT--TG----TATCTATATGAGATGATGA--ATGTTAACTA
GACTTATTGCGGTAATCATTCCACAACATATA--T--GTCACATCATTATGCTGTACACCTTAAACTTATACAG-TGCTG
TATGTGAATTATATCTCGATAAAA-CTGGAAAAAAA----AAGAAATTCACATTTTCA---CTTTCCTTATCTGTCT-GC
AAAGGCTGA-----------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------ATA
AAATACCTC-----TCATAGTGAGGGAA
>Ceratotherium_simum
TTTCAGTGCATTAGTAGGATGTACTAGTTACAACTGT----------------------------------------TTT
AAAAATGCAT---CAGAAATCCACATTTTCA------------GAGGTGG-----GGATAAGGG----------------
--G-AGAGGGAATTGGATGAAGGTGATCAAAAGGTACAAACTTCCAATTAT--AAGATAAATAACTACT---AGGGATGT
AATTTACAAC---ATGACTACAG-TTAACACTGCTCTATGGTGTATTTGAAAGTTGTTAAGAAAGTAAATCCTAAGAGTT
TTCATCACAAGGA-AAAAACGTTTTTTTCTTTT----TTTT--TG----TATCTATATGAGATGATGG--ATGTTAACTA
GACTTATTGTGGTAATCATTTCACAATATATA--T--GTCA---CATTATGCTGTACACCTTAAACTTATACAG-TGCTG
TATGTCAATTATATCTCAATAAAA-CTAGAAAAAAA----AAGAAATTCTCATTTCAG---CTTTCCATATTTGTCTGGT
AAAAGCTGA-----------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------ATA
AAATACCTC-----TCATAGTGAGGGAA
>Myotis_myotis
TTTCAATGCACTAATTGGAT-----------GACTAT----------------------------------------TTT
AAAAATCGAT---TAGAAATCCATATTTTCA------------GAGTTAGCAGATTGGTGGGAG----------------
--G-AAGGGAAATTAAGGGAAGGTGGTAGAAAGGTACAAACTTCCAGTTAT--AAGATAAATAAGTAGT---AAGGATGT
AATCTACAAC---ATGACTATAG-TTAACGCTATTATATAGTACATTT-AAATTTGTTAAGACAGTAAATCCTAAGAGTT
TTCATCACAAGAATAAAACAAACT-------------TTTT--TG----TATCTATATGAAATGATGG--CTATTAACTA
GACTTATTGTGGTGAGAG--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>Rousettus_aegyptiacus
TTTCAATGCAGTAATAGGAT--ACTATATATATATATATATATATATATATATATATTTACTTGTATATATTTTACTTTT
ACGAATACAT---TAGAAATCCACATTTCCA------------GAGACAG-----GGAATAGGG----------------
----AGGGGAAATTGGAAGAAGGTGGTCAAAAGGTACAAACTTCCCATCAC--AAGAGAAGCAAGTACT---AGGGATGC
AATTTACAATATGATGACTATAG-TCAACACTGTTATATAGTATATTTGAAAGTGGTTAAGAGAGTAAATCTTAAGAGTT
CTCATCACAAGGAAATAAAAACA--------------TATT--TT----ATTCTCTATGAGAAGATAA--ATGTTAATTA
GATTTATTGTGATAAGACTTATTGGGGTTCATTAT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------
>Condylura_cristata
TTTCAATGTGTTAATAGACTGTACAATTTATGATAAT----------------------------------------TTT
AAAAATTCAT----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------GAAAAATCTCCATTTTCA---TCTTCTGTGTATGTTTGGT
AGAATTTGA-----------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------ATG
AAATATTC------TCATAGTGAGAGAA
>Erinaceus_europaeus
TTTAAACATATCAACATACAATATAATTTTATTATGT----------------------------------------TTT
AAAGATCCAT----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------AAGAAATTCACA-TGCCA---CTAT------------GAG
GACAGCTGA-----------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------GTG
AAATAACTC-----TCAGATTGAGTAAA
>Homo_sapiens
TTTCAATACTTTAATAGGATGTACTTTTTAGGACTGT----------------------------------------TTT
AAAAATCCGT----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------AAGAAATCCACATTTTTA---CTTTCCATATTCGTCTGGT
GAAAGTGAA-----------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------ATG
AATTTTTTA-----CCATAGTGAAAGGA



Dog517_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
-------------------------------------------------------------TTTTTCCAGCTTTATTGAG
GTA------TAATTGACAAATAAAAATTGTATATATTTAAG-GTGTACAACGTGATGTTTTGATATACGTA--------T
ACATTGTGAAATGATTACCACAA--------------------------------------TCAAGCTAATTAACATATC
CATCACCTCACATAGTTACCATTTTTTTGTGTGTGGTGAGAACACTT-AAGATCTACTCTCTTAGCAAATTTCAAGTATA
CAATACAGTAT--------------TATTAAC-TATAGTCACCATGCTGTACAT-TAGATCTCCAGAACTTATTCATCCT
GCATAACTGAAACTTTGTACCCTTTGACCAACATCTCCCCATTTCCC---CCACCCCCCAGC-CCCTGGCAACCACCATT
CTACTCTCTGCTTCTATGAGTTTGACTTTTTTAGATTCCACATATAAGTGAGATCATGCAGTATTTGTCTTTCTGTGCCT
--------------------------------------------------------------------------------
>Canis_familiaris
CTT-----TACATTTTA-TATATATTTCTAGTTTTTATTTTTTTATTATTATCTAGTTTTTTTTATTTCATTAATAAATC
TCAATCAGAAAGATACTCTA---CAAATTTAATTTCT---TTTTATACTTATTTTTCAA--TGTTTCCAGCCTTCTTAAG
ACA------TAGTTGATATAT-AACATTGTGTAAGTTTAGG--TGTATAACATGTTGACTTGATACAACTAT-------T
AAATTGCAAAATGATAACCAGTA--------------------------------------TAGTATTAGCTACCACTGC
CACCCCACCACATAGTTATCATTTCTTT-TTTGTGGTGAGAACATTT-AAGATCTACTCTCTAATCAACATTCAAGTATA
CGATACAGTAT--------------TATCAGC-TATAATCACCATGT--TACAT-TAGATCCCCA-AACTTGTTAATCTT
--ATAACTGGGAATCTAGACCCTATGAGCGAAGTCTTCCCCGTACCT----ACCTCCTCAAC-CCCTGGTATCTACCATT
TTA----CTGTTTCTCTGAGTTTGTCCTTTTTAGATTTCACATACAACCGATTTCATGCACTATTT--------------
---CAAATTT-----T---AAA--------TCACTTTAAATATATATTCGGTGACTATTATGATGTTTCAAAGTTGATGC
>Felis_catus
CTTATCTTTACATTTTA-TTTTTATTTCTAC---TTATAAATT-------------------------------TAAATC
CCAATCGGAAAGTTACTCTA---CAAATTTAACTTCT---TTTTAAATTTATTTTTCAAGTTTTTGCCAGCTTTCTTGAG
ACA------TAATTGACATGT-AACATTGTATAACTTTAGG--CATACAACATGTTGATTTGATACATGCA--------T
AAACTGCTAAATGATAACCGTTA--------------------------------------TA-TATTAGCTACCACGTC
CATCCCATCACATAGTAACCATTTCTTT-TTTGTGGTGAGAACATTT-AAGATTTACTCTCTAATCAACATTCAAGTATA
GAGT--AGTATCACATACTAGTTAGTATTAGC-TGTGATCACCTCGC--TATAT-TAGATTCCCA-AACTTTTAAATCTT
--ATAACTGGGAGTTCAGACCCTTTGAGCAATGTC-TCCCCTTACCT-----CCTTCCCAAC-CCCTGGTAACCACTATT
TTA--ATCTGTTTCTCTGAGTCTGTCCTTTTTAGATTTCACATATACCTGATACCATACACTATTT--------------
---CAAACTTCTCCTT---AAA--------TGACTTTAAGTATATACTTGTCAACTATTACAGTGTTTAAAAGTGGCTGC
>Manis_pentadactyla
TTTACGTACATACTTTGTTTTTTAATTTTAGTTATGAAAATTT---------------------------------AAAC
CCAATCAGAAAGTTAT--TT---CAAATTTAACTTCT-----TAGAATTTACTTTTAAT-TTTTTCCCAGCTTTCCTGAG
ATA----------TGACACAT-AACATTATCTAAGTTTAGGTATATACAATATGTTGATTTGACATATTTA--------T
AAATTGCAAAATGATGACCACTA--------------------------------------TAGTGTTAGCTACCATTTC
AATCCTATCACATAGTTACCATTTCTTT-TTTGTGGTAAGAACATTT-AAGATCCACTGCCTTAGAAATATTCAAATGTA
TGATACAGTAT--------------TATTAGT-TAAAATCACCATGCTGTATACATCAAGTCCCA-AACATGTTAATCTT
--ATAAA-GGGAATTTGTATACTTACAGCAACATA--CCCATTACCC---CCACCCCCTAAC-CCTTGGTAACCACCTTT
CTA--CTCTATT--TCTGAGTTTGTCCTTTTTAGATTCCACATATAAGTGGTATCCTACAGTATTT--------------
---CAAACTTCC---------------------CTTTAAATATATACTTTGTAAGTATTAGGGTGTTTACAAGTTGTGGC
>Sus_scrofa
TTTACCTTTACATTTTG-TTTTCGGTTTTATTTATTATAAATT-------------------------------TAAATC
CCACTCAGAAAATTACTCTA---CCAGCTTAACTCTT-----------------TAAACATTTTTTTCAGCTGTTTTGAG
ATG------TAGTTGACACAA-AACATTGCGTACGTTTACG--TGTACGGCATGTTGATTTCATACATTCA--------T
AAACTGCAAAATGACCACCACCATAGTGGCATATATACAGTGGTCCAACACTACACCCCGATGA-ATTAGCTACC-CCTC
CATCCCATCACATAGTTACCGCTTCCTT-TTTGCGGTGGGAAGATTT-AAGATCTACTCTCGTAGCAACATCCGAGTATC
TTATACAATAG--------------TATTAGC---CATCTACCATGTTGTACAT-GCAACCCCCA-AACTTGTT-ATCTT
--CTAACTGGGAGTTCACATCTTTTGAGCAATGTTTTCCCATTACCTCCACCCACTCCCCTC-TCCCAGGAACCACCATT
CTA--TTCTGCTTCTCTGAGTCTGTCCTTTTTAGATTCTACATGTAAGTGATATCATACAGTATTT--------------
---CAAACTTCTCTTC---AAA--------TGACCTTAAAGATACACTTGG--ACTATTATGGGGTTTAAG-TTTTTGGC
>Tursiops_truncatus
TTTACCTTTACATTTTA-TGTTTAGTTTTAGTTATTATAAATT-------------------------------TAAATC
CCAATCAGAAAGTTACTCTA---CAAGCTTAACTTTT-----TTAAATTCATTTTTTAT-TTTTTTCCAGCTTTCTCGAG
ATA------CAGTTGACACAT-AAAATTGTGTAAGTTTAGG--TGCACAACACTTTGATATGATACATTTA--------A
AAACTGCAAAATGATTACCACGATACCAG--TACATATAGTGGTATAATACTACACCCCAGTAATAGTAGCTAGCACCTC
TATCCCATTACGTACTTACCACTTCCTT-TCTGTGGTGAGAACATTTAAAGATCTACTCTTTTAGCAACATTCAAGTATA
TGAC--AGTAT--------------TATTAGCTTATAATCACCATGTGGTACAT-TCAATCCCCG-AACTTGTTAATCTT
--ATAACTGGGAATTTGTACCCTTTGAGCAATGTCTCCTCATTAACTCCGCCCCCTCCCAAC-ACCTGGTAACCAGCATT
CTT--TTCTGTTTCTCTGAGTTTGTTCTTTTTAGATTCCATATATAAGTGATATCATACGGTATTT--------------
---CAAACTTCCCTTT---AAA--------TGAGTTTAAATATATACTTGGTGACTATCAGGGTGTTTAAAAGTTGTTGC
>Myotis_myotis
TTTAC-TCTACA------TTTTTATTTTTAT---GTAAACATT-------------------------------TAAATC
CTAGTCAGAAAGTTATTCTA---CAAACTTACTAATA-----------TTCTTTTAAATTATTTTTTCAGCTTTACGGAG
ATATACCAGTAACTGACATTT-AACATTGTGCAAGTTTAAG-GTACACAACAGGTTGACGTAATATATTTAT-------A
AAACTGCAAAATGATTACCACCA--------------------------------------TCATATTCACTGCCACCTC
CATCCCCTCA--TAGTTGCCATTTC----TATGTGGTAAGAACCTTT-AAGATCTACTCTCT-AGCAACATTCAAGTACA
TGATAAAGTAT--------------TAATAGC-TATAAACACCATGCTGTACAT--CAGAGCCCA-AACTTGTTAATCTT
--ATAACTGGAAGT-CACACCCTTTAAGCAAAACCACCCCACTTCCC---CCACCGCCCCACCCGCTGGTAACCACTACT
CCA----CTGTTGCTATGAGTTTGTTTTTTTCTGATTCCACATGTAAGTGTCATCAAACG-TATTT--------------
---CAAACTTCTCTTT---AAACCTTTAAATGGCTTTAAATACATACTTGGTGACTATTAGGGGACTTAAAAGTTGTTGC
>Rousettus_aegyptiacus
TTTAC-TTTATATTTTG-TTTTTATTTTTAGTTATTATACATT-------------------------------TAAATC
CTAATCAGTTATTT---CTA---CAAACTTACATTTT-----TTAAATTTTTATTTA----TTTTTCTAGCTTTATCAAA
TTT------TAATTGACACAT-AACATTATGTAAATTTAAG-GTGCGCAATGTGTTGATGTGATACATTTATAAACTTAT
AAACTGCAAAATGATTACCACCC-------------------------------------ATAGTATTAGCTACCACCTC
CGTCTCATCAC--AGTTACCATTTCTTT-TTTATGCTGAGAACATTC-ACCATCTAA-CTCTTAGTAACATTTGAGTATA
TGATACTGTAT--------------TAATAGT-TACAAACATTATGCTGTGCAT-TAGATCCCCA-AACTTGTTAATTGT
--ATAACTGGGAGTTGGTACCTTTT-AGTAACATCTCCCCATTCCCCCCCCCCACCCCCCACACCCTGGTAACCACCACT
CTA--CTTTGTTTCTCTGAATTTGTTCTTGTCAGATTCTACACATAAGTGATATCATACGATATTT--------------
---TAAACTTCCCTTT---AAA--------TTACTTTAAAGATATTCTTAGTAACTATTAGTGTGTTTAAAAGTTGCTGC
>Equus_caballus
TTTACC------TTTTG-TTTTTATTTTTAGTTATTATAAATC-------------------------------TAAATC
TCATTCAGAAAGTTACTCTA---C-CACTTACC-TTT-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AAA--------TGCCTTTAAATATATATTTGGCGAATAATAGGGTGTTTAAAAGTTGTTGC
>Ceratotherium_simum
TTTACCTTTACATTTTG-TTTTTATTTTTAG---CTATAAATT-------------------------------TAAATC
CCAATCAGAAAGTTACCCTA---CAAACTTACC-TTT-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AAA--------GGACTTTAAATATATACTTGGTGAATAATAGAGTGTTTAAAACTTGTTGC
>Uropsilus_gracilis
TTCACTTTTACTTTT----------TTTTAGTTACTACAAACT-------------------------------TAAGTT
CTAATTAAAAATT-----TA---CAAACTTTCCCCTA-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------CAT---------GACTTT----ATATACTTGGTGAACATGAGGGTATTTAACAGTTGTTAC
>Sorex_araneus
TTTATCTTTATGAGT----------------TTATTATAAATTC------------------------------TAAGCG
CCAATTGAAAACTTACTCTA---CAA-CTTA-----T-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AAA--------TGATTTTAGATACATATGACGTAAACATTAGGGCATGTAAAAGTTGTTGC
>Homo_sapiens
TTTCCCTTACCATTTTG-TTTTGAATTTTAGTTACTATATATT-------------------------------TAAATT
TCAATCAGGAAGTTACTCTA---CAAACTTACC-TTT-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------CAA--------TGTTTATAAATATAAATTTGGTGAATATGATGGTGTTTAAAAGTTGTTGC



Dog520_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
TTTTTCCAGCTTTATTGAGGTATAATTGACAAATA---------AAAATTGTATATATTTAAGGTGTACAACGTGATGTT
TT-GATATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTACCATT-
-TTTTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAAATTTCAAGTATACAATACAGTATTATTAACTATAG
TCACCATGCTGTACATTAGA------------------------------------------------------------
---------------
>Canis_familiaris
AGAGTTATACAGTGCA--CC-ACCTGTACAACTGGGTGTGGCAGTCCTGGGA---AGG-AGCAGTTTTT---TTTAAATT
AAAGAAAAAATT--TTGAGATACAATTAACAT------------AACACTATATTAATTTCAGATACACAACATAATGAT
TT-----CATATATATGTTGCAAAATGGTTCCCACAATAAATC----TAAC--ATCCATTATCACACATAGCTATAGTTT
-CTTTTTCTTGTGATGAGAATTTTTAAGATCTGCTCACTTACTAACTTGCAGATATGCAATACAGTATTATTAACTATAG
TTAACGGG---------------AGTTACTTTT---AAGTCTCCTTCGGA-AGAGAAAGTTGGCATTAACACAA---TGT
CTCCTCCTTGTT--C
>Felis_catus
TCAGTCATACAGTGCA--AA-ACCTGTGCAACTATGTGTGGCAATCCTGGCA---A-------TTTCTT---TAAAAGTA
AAGAAAAAAATTTGTTGAGATATTATTGAC--------------------GTATTAATTTCAGGTGTACAACGT---GAT
TC-CATATATGTATGTACTGCAAAATGGTCCCTGTGATAAATT---CCAA---GTCCATCAACACACATAATT-------
-TTTTTTCTTGTGATGAGAACTTTTCAGATCTACTCACTTAACAACTTTCAAATCTGCAACACAGCATTATTAACTGTAG
TTAATAGG---------------AGCTGCTTTT---AAATCTCCTTTAGA-ATAGAAAGTTAGCACTAATCCAATGGTGT
CTCTTTCTTGTT--C
>Manis_pentadactyla
AGAGTTACACAGTGTATTTCTGCCTGCACAACTGTATGTAGCAGTCCTGAAA---AGC----AGTTTTT---TTAAACT-
--AAAAAAATTTTTTTGAGTTAGA-----------------------------------TCAGATATACAATGTAATGAT
TCAAATATATGTATAAACTACAAAATGATCCCCACAGTAAGTC-----AAC--ATCCATCACCTCACACAGTTACGAAT-
-TTTTTTCTTGTGAAAAAAACTTTTAAGATCTACTCATTTAGCAATTTTCAAATATG-AATACAGTATTATTAAT--GAG
TTAACAGG---------------AGTAGTTTCT---AAATCTCCTCTGGA-AGAGAAAGTTGGCATTAATCCAATGTTGC
CTCCTCTTTGTTCTC
>Equus_caballus
ACAGTTGTACAGTACA--TC-ACCTGCACAACCATATGTGGCAGTTCTGGGA---AGG-AGTAGTTTTT---TAAAAATT
AAAAAAATATTTTATTGAGATATGATTGACATAT----------AACATTATGCTAGTTTCAGATGTACAACATAATGAT
TT-GAGGTTTGGGTATATTGCAAAATGATCCCCACAATAAGTCTAGTTAAC--ATCCATCACCACGCATAGTTACAAA--
-TTTTTTCTTGTGATGAAAACGTTTAAGATCTACTCTCTTAGCAAATTTCTAATATATAATACAGTATTACTAACTAGAA
TTAAT------------------AGTAGTTTTT---AAATCTCCTTC-GA-AGAGAAAGTTGG-ATTAATACAATGTTGT
CTCCTCTTTGTTCCC
>Ceratotherium_simum
ATAGTTATACAGTACA--CC-ACCTGCACAACTGTATGTGGCAGTCCTGGGG---AAGGACTAGTTTTT---TAAAAATT
AAAAAAAAA-TTTATTGAGATAGAATTGACATAT----------AACATTACATTAGTTTCAGATGCACAAGATAATGAG
TT-GATATTTGTATATGTTACAAAATGATCCCCACAATAAGTC----TAAT--GTCCATCACCACATATAGTTACAAATT
TTTCTTTCTTGTGACAAGAACTTTTAAGATCTACTTTCTTAGCAAATTTCAAATATGCAATACAGTATTATTAACTAGAG
TTAATAGG---------------AGTAGTGTTT---AAATCTCCTTTGGA-AGAGAAAGTTGG-ATTAATCCAATGTTGT
CTCCTCTTTGTTCCC
>Myotis_myotis
CCAGTTCTGCAGGGCA--CC-CCCTGCACGACTGTATGGGGCACTCATGGAA---GGA-AGTAGTTAAA-----------
------AAAATTTTTTTAAGTTTAAATGAGATGTAACGATGCCTAACATTGTAATAGTTTCAGGTATACAGCATAATGAT
TC-AATATTTATATGTATTGCAAAATGATCCTCATAGTAAGTGTAGTTAAC--ATCCATCACTGCACATAGTTACAAATT
CTTTGTTCTTGTGACGAGAACTTCTAAGATCAACTCTCTCAGCAACTTTCAAATATGCAATAGAGTATTATTAACTATAG
TTAACAAG---------------GGTAGGTCTT---AAATCT-CTTTGGA-AAAGAAGGTTGGCATTAATCCGATTTTGT
CTCCTCCCCCTT-CC
>Rousettus_aegyptiacus
AGAGTGATACAGTGTG--CC-ACCTGCACAACTGTATGCGGCCCACCTGGAA---AGA-AGTAGCTTAA-----------
--------ATTTTTTTAAGATATAATTGACATCT----------AACATTGCCTTAGTTTCAGGTGTACAACATAACGAT
TC-AATATTTGTTTATGTTGTTAAATGATCCTCAAAATAAGTCTAGCTAAG--AAAGATTACCACATGTAGATAAAAATG
TTTTTTTTTTGGTGTGTGA------CAGACAAGAACTTTTAGCAACTTTCAAATATACAATAGAGTATTATTCACTGTCA
TTAACAG----------------GGTAGTTCTT---AAATCTCCTTTGGA-AGAGAGAGTTGTCATTAATCCAACATCAT
TTCCTCTTTATT-CC
>Sus_scrofa
AGAGTTGTGCAGTGCA---C-ACCTGCACAACTGTATGTGGCAGTACTAGAA---AG----TAGTGTTT-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------AAATCTTCTTTGGA-GGAAAAAGTTGGCATTAATCCATTGTTGT
CTCCTTTCCCTTTCC
>Tursiops_truncatus
AGGG---CACAGTGCA---C-ACCTGTACAACTGTATGCAGCAGTCCTAGAA---AGA-AGAAGTGTTT-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------AAATCTTCTTTGGA-AGAGAAAGTTGGCATTAATCCACTGTTGT
CTCCTTTCCATTTCC
>Erinaceus_europaeus
AGAGTTATGAAATGCA--AC-ACCTACATAACCATATGTGGCAATCCCAGGA---AGG-AGAAGCTTCT-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------AGAGCTCTTTGGGA-AGAGAAAATTGGCATTAACTTGAAAGTAT
CTCCTCTTTGCTTCC
>Sorex_araneus
AGAGCTCCACGGGGGGTCTA-GCCTGCACACCCAGGTGTGGCCCTGCTGGAA---ATG-CCTGGTCTTT-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------AGGTCTTCTTTGGCTGGGGAAAGTTGGCATTGAT-CGATGGTCT
CTTTCCTCTGTGCCC
>Homo_sapiens
AGATCTACACAGTGTA--CC-GCCTATACAGCTGTCTGTGGTAGTCCTGGGA---GGA-GGTAGTTTTA-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------AAATCTCCATTGGA-ATTGAAAGTTGGCATTAATCTCATGTTGC
CTCCTCTTACTTCCC



Dog522_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
-----------------------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAA-ATTGTATATATTTAAGGT
GTACAACGTGATG--------------------------------------------------------TTTTGAT----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------ATACGTATACATTGTGAAATGATTACCACA-----ATCAAGCTAATTAACATATCCATCACCTCA---
-----------------------------------CATAGTTACCA---TTTTTTTGTGTGTGGTGAGAACACTTAAGAT
CTACTCTCTTAGCAAATTTCAAGTATACAATACAGTA--------TTATTAACTATAGTCACCATGCT-GTACATTAGAT
CTCCAGAACTTATTCATCCTGCATAACTGAAACTTTGTA-CCCTTTGACCAACATCTCCCCATTT---------------
-------CCCCCACC------CCCCA------GCCCCTGGCAACCACCATTCTACTCTCTGCTT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CTATGAGTTTGACT-----------
--------TTTTTAGATTCCACATATAAGTGAGATCATGCAGT-ATTTGTCTTTCTGTGCCTGGCTTATTTCACTTAGCA
TAATGTCCTCCAGGTTCATCCATGTTGTCACAAA-TGGCAGGA----------------TTTCCTTCTTTTTTAAGGCTG
AATAATATT-CCATTGTGTATATATACCACATTTT---------------------------------------------
------------------------
>Canis_familiaris
GAAATTTTGATTGCATTTAAA------------------------------------ACATATACTTCT---TTTTTTT-
--GGCTTTGCTTTTAA---AAGAAATTT--------ATTGAAGTATAATTGAC-TACAATATTATGTT-------TAGGT
AAACAACATAATG--------------------------------------------------------ATTCAAT----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------ATTTGCATATATTGCAAAATAATCACAATAAGTCTAGAAGTCTAGTTAACATAT--ATCACTAGACCT
GCCCCCCTACCAAAGACAGTCACGATA--------CATAGTTACAGAA--TTTTTTTCTTGTGATGAGAACTTTTAAGAT
GTACTTTCATAGTAACATAGTAATTTAGAGTTTTGTGGGTTTTTTTTTTTTCCTGTAATT--CAAGCTAGTTAACAATA-
----GTGTATTATTAGTTTC--AGGGTGAGGATAATTTAGAGTTTTGCCTTAAATCTGCCCTCCA---------------
---------TCTACC------CTCCATCTCTCATCTCTGGCAACCACCAGTCTGTTCTCTGTATCTATAAGGTTGGGTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGGTTTTATTTATTTATGATAGTCACAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGGCAGAGACACAGGCAGAGGGAGAAGCAGGCTCCATGCACCGGGAGCCCGACGTGGGATTCGATCCTGGGTCTCCA
GGATCACGCCCTGGGCCAAAGGCAGGCGCTAAACCGCTGCGCCACCCAGGGATCCCTATAAGGTTGGTTTTTGTTCTTGT
TGTTGTTGTTTTTAGATTACACATATAGGTGAGATCATACAGT-ATTTGTCTTTC----TCTGACCTATTTCTTTTAGTA
CAATGTCCTCAAGATCCATCCATGTTGCTGCAAAATGGCAAGATCTCTCTTTTGTTGTCTTTTTTTTTTTTAAACGGCTG
AATAATATGCCCATTGTATAT-----------------GCTTTGT-TTTTT---CATAGCATCAACCTGATCCTGCAATT
GGAGTCCACCTTATGGATAGATAC
>Felis_catus
GAAATTTTTGTTGCATTTAAA-ACATTTTCTTAAAATGA-------TGAGATT--AGGCATATACTTCT---TTCTTC--
--TGCTTTGCTTTAAA---AAAATT-----------ATTGCAGTATAATTGACATAC---ATTATGTT--AGTTTCAGGT
GTACGATATAATG--------------------------------------------------------ATTTAAT----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------ATTTGTATATATTG-----TAATCACTACA-----ATGAGTCTGGTTAACGTAT--GTCACAATACCA
AAACAAAAAACAAAAAAAACAAAAAAACATATCACCATACATACAGAATTTTTTTTCCTTGTGATAAGAACTTGTAAGAT
TTACTTTCTTAGCAACTTTTAAATATGCAATACAGTA--------TTATTAACGATAGTCACCATGCT-GTACATTACAT
CT-CATGTCTTACTAAATTT--ATAACTGCAG-TTTGTC--CTTTTGGCTCCCTTCACCCATTTG---------------
-GTCTTACCCCCACC------TCTCA---------TCTGGCAACCGCCAATCTGTTCTCTGTAT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CTATAAGGTTGGTTTTTGTTCTAGT
CGT---TGTTTTTAGATTACATGTATAAGTGAGATCATATGGT-ATTTGTCTTTC----TCTGACATATTTCATTTAGTA
TAATGCCCTTAAGATCCATCCATGTTGCCATAAA-TGGCGAGA-----------------TTTCATTTTTTTTATGGCTT
AATAATATG-CCATTGTATAT-----------------GCTTTGC-TTTTT---CATAGCATCAGCCTGATCCTGCAATT
GGAGTCCACCTTATGGATAGATAC
>Manis_javanica
GACATTCTGATTGCATTTAAA-ACACTTTCTTTTAATGA-------TGCTATT--AGACATACACTATT----TTTTTT-
----CTTTGCTTAAAA-------------CATTTATTTTGAGGTATAATTAACATACAACATT-------AGTTTCAGGT
GTACAACATAATG--------------------------------------------------------AATTGGT----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------ATTTGTATATATTGTGAA-TGATCCCCACA-----ATAAGCCCAATGGACACTG--GTCATCATA---
-----------------------------------TATGGTTAGAGA--TTTTTTTTCTTATGATGAGAACTTTTAAGAG
CGAATCTCTTAGCAACTTCCAAATATACAATACAGTA--------TTGTTAACTATAGTCACCATGCT-GTACATTACAT
CCTTGTGACTTACGCATTTT--ATAAATAGAAGTTTTTAATCTTTTAATTCCCTTTATCCATTTGACTCACTGTCAAAAC
TGCCCCCTCCCTACAGCATC-CTCCACCCCCAATCTCTCGCAATTACCAGTCTGTTTTCTATTA----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CTATGAG------------------
--------TTTTGTAGTTTCATGTATAAGTAAGATCATATGCTTATTTATCTTTG----TCTGACTTA-----CTTAGCA
TAATGCCTTTAAGGTCTATCTATGTTGTTGCAAATTGGTGAGA----------------TTTTATTATTTTTAATGACTG
AATCATATA-CCATTGTGTAT-----------------GCTTTGC--TTTT---CATAGCACCAACCGGATCCTGCAATT
GGAGTCCACCTTATGGATAGATAT
>Equus_caballus
GGAATTTTGATTACATTTAAAGACATTTTGTTATAATGA-------TGCTTTT--AGATACATACTTTT---TTTGTTT-
--TGCTTTTTTATTTT-------------------TATTGAGGTGTAATTGGCATACAGTATTATATT--AGTTTTAGGT
GTACAAC--AACG--------------------------------------------------------ATTCGAT----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------GTTTGTGTATATTATGAAATGATTACCACA-----GTAATTCTAATTAACATCC--ATCACCATA---
-----------------------------------CGTAGTTATAGAA--TTTTTTTCTTATGATGAGAAATTTTAAGAT
CTACTCTCTTAGCAACTTTCAAATATGCAATACAGTA--------TTATTAACTATAGTCATCATGCT-GTACATTACAT
CCCCATGACTTATTTATTTT--ATAACTGGAAATTTGTA--CCTTTGACCTCCTTCATCCATTTG---------------
---------CCCACC------CCCCACTTCCTGCCTCTGGCAACCACCAATCTGTTCTCTGTAT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CTATGAGCTTTTTT-----------
--------TTTTAAGATTCTATGTATA-GTGAGATCATACAGT-ATTTGTCTTTCTCTGTCTGATTTATTTCACTTAGCA
TAACGTCCTCAAAGTCCATCCATGTTGTTGCAAA-TGGCAAGA-------------------TGTTCTTTTTTATGGCTG
AATAATATG-CCATTGTATAT-----------------GCTTTGC-CTTTT---CATAGCATCAGCCTGATCCTGCAATT
GGAGTCCACCTTATGGATAGATAC
>Ceratotherium_simum
GAAATTTTGATTACATTTAAA-ATATTTTGTTATAGTGA-------TGCTATT--AGACATATACTTAT---TTTTTTT-
--TGCCCTGCTTTTTC--------------ATTTTTATTGAGGCATAATTGACATACAATATTATGTT--AGTTTGAGGT
GTACAACATAATG--------------------------------------------------------ATTCGAT----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------ATTTGTGTATATTGTGAAATGATCACCACA-----ATAAGTCTAGTTAACATCT--GTCACTGTA---
-----------------------------------CCTAGTTACAGAAATTTCTTTTCTTGTGAAGAGAACTTTTAAGAT
CTACTCTCTTAGCAACTTTCAAATATGCAATACAG-----------------CTATAGTCACCATGCT-ATATATTATA-
CCCCATGACTTATTTATTTT--ATAACTGGAAATTTGTA--CCTTTGACTTCCTTCATCCATTTG---------------
---------CCCACT------CCCCA-------CCTCTGGCAACCACCAATCTGTTCTCTGTAT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CTATGAACTTTT-------------
--------TTTTTAGATTCCATGTGTAAGTGAGATCATACAGC-ATTTGTCTTTC----TCTGACTTATTTCACTTAGCG
TAATGTCCTCAAGGTCCATCCGTGTTATTGCAAA-TAGCAAGG----------------TATTGTTCTTTTTTATGGCTG
AATAATATG-CCATTGTATAT-----------------GCTTTGT-CTTTT---CATAGCATCAACCTGATCCTGCAATT
GGAGTCCACCTTATGGATAGATAC
>Myotis_myotis
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-
--NNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGATAG
TCGATGGTTGACCAGCCGCTATGATGTGCACTGACCACCAGGGAGCAGATGCTCCTACCAGTAGGTTAGCTTGCTTCTGG
GGTCTGGCCAATTGGGACTGAGTGAGACAGGCTGGACATGCCCTGGAGCCCTCCCTCGGTCTCTCCCTGGCTGGCCAACC
TCCCGCGTCCCTCCCCGGTCCCGATCGTGCACCAGTGGGGTCCCTCAGCCTGGCCTGTGTTTTCTCGCAATCTGGGACCC
ATTGGGGGATGTCAGAGAGCTGGTTTCGGCCTGATCCTGCAGACCAGGCCAAAGGACTGCACTGGTGCCCGAATTCGTGC
ACCGGGCTTCTAGTTTGTATATATTGTGAAATGATCACCACA-----ATAAGTGTAAATAATATCT--GTCACCATA---
-----------------------------------CAGAGTTATATAA-TCTTTTTTCATGTAATGGGAACTTTTAAGAT
---CTCTTTTAGCAATGTTCAAATATGCAATACAGAA--------TTATTAATGGAAGTTGCTGTGCT-ATAAATTACAC
ACCCATGATTTATTTATTTT--ATGATTGGAGGTTTGTA-CCTTTTGACTTCCTTCAGCTGTTTG---------------
--------GCCCACCACATATCTCCA-----TGTCTTTGGCAGCCACCAATCTGTTCTCTGTAT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CTATGGGCTTGTTT-----------
--------TATTTTTATTCCATAT--------------------------------------------------------
---------------------------------------------------------TATTTTATTATTTTTCATGGCTG
AATAATATG-CTATTGTATAT-----------------GTTTTGGTTTTTT---TGTAGCATCAACCAGATCCTGCAATT
GGAGTTCACCTTATGGATAGATAC
>Rhinolophus_ferrumequinum
GAAATTTTGATTACATTTAAA-ACATTTG-TTACAATGA-------TGCTATT------------------------TT-
--TGCTTTGCTTTTTA---AAAAAAATA-------TATTGAGATATAATTGACATACAATATTATATT--GCTTTCAGGT
ATATAACATAACG--------------------------------------------------------ATTTGAT----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------ATTTGTATATGTTGTGAAATGATCATCACA-----GTAAGTCTAGCTAATATCT--GTCACCATA---
---------------------------------------GTTACAGAATTTTGTTTTTTTGTGATGAAAACTT--AAGAT
CTACTCTTTTAGCAACTTTCAAATATGCAGTGCAGTA--------TTATTAACTGTTGTTGTTATGCT-GTACACTATAT
CCCTGGGACTTATTTATTTT--ATAACTGGAAGTTTGTA-TCTTTTGACTCCCTTCATCCATTTG---------------
-------TCCCCACC------CCTAC-----TACCTCTGTCAATCACCAATATGTTCTCTGCAT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CTACAACCTTGGTTTTGGTTTTTAT
TTTTTCTGTTTTTTGAGTCCACATATAAATGAGATCATACAGT-ATTTTTCTTTCTCTGTCTGACTTATTTCACTTAGCA
TAATGCCCACAATGTCCATCTATGTTGTTTCAAA-TGGCAAGA----------------TTTTGTTCTTTTTTAT-----
--------------------------------------ACTTTGC-TTTTT---CATAGCATCAACCTGATCCTGCAATT
GGAGTTCACCTTATGGATAGATAC
>Sus_scrofa
GAAATTTTGATTACATTTTAA-ACATTTTGTTATAATGATCCT---GTCTATT--AGAGATGTAC-------TTTTTTT-
--TCCTTTGC-TTTTT----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------CATAGCATCAACCTGATCCTGCAATT
GGAGTCCATCTTATGGATAGATAC
>Bos_taurus
GAAATTTTGATTATATTTTAA-ATATTTTGTTTTAATGATCATATGTCTTATT--AGACATGTAC-------TTTTTTT-
--C-TTTTGC-TTTTT----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------CATAGCATCAACCTGATCCTGCAGTT
GGAGTCCATCTTATGGATAGATAC
>Condylura_cristata
GAAACTTTGATTACAGTCTAA-ATATTTTGTTATAGTGG-------TGTTGTTTTAGACAGAAAA-----------CAT-
--TTTTTT---TTCCC----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------CATAGCATCAACCGGATCCTGCAATT
GGAGTCCACCTTATGGATAGATAC
>Solenodon_paradoxus
GAAACTTTGATTGCATTTTAA-ACATTTTGTTACAATGT------ATGT-GTA-TATATGTGTGTGTTTATTTATTTAT-
--TTACTTTATTTTTT----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------GATAGCATCAACCTGATCCTGCAATT
GGAGTCCACCTCATGGATAGATAT
>Homo_sapiens
GAAATTTTGGTTACATTTAAA-ACATTTTGTTATAATGA-------TACTGTT--AGAAATAC--------------TT-
--TTTTTCCCCCTTTC----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------CATAGCATCAACCTGATCCTGCAATT
GGAGTCCATCTTATGGATAGATAC



Dog524_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
---------------GACGGATTTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGT
ACAACGTGATGTTTTGATATACGTATACAT--------------------------------------------------
-----------------------------------------------------------------TGTGAAATGATTACC
ACAATCAAGCTAATTAACATATCCATCACCT--------------------------------------CACATAGTTAC
CATTT---TTTTGT------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------GTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAAATTTCAAGTA
TACAATACAG-TATTATTAACTATAGTCACCATGCTGTACATTAGATCTCCAGAACTT----------------------
-------------------------------------------------------
>Canis_familiaris
CAAACTAATTCAG---CAACAAATACTTGTT-----------------ATAATACTCAGGT---A---TTTTACTTTTTT
AAACATTTAAAA-----------------------ATTAAGAGGTAATCAACATAT-AAC-----ATTCGTTTCAGGTGT
ATAACATACTGGCTTTTTTTTTTTATATAT--------------------------------------------------
---------------------------------------------------------------ATTGTGAAATAATCACA
ACAGTAAGTCCAGTTAAT--ATCCATCACCACACACACACACACACACACACACACAAATATTCATCACCACACAGTTAC
AAATTTGTTTTTTCTTGTGATGAGAACTTTGTTTTTGACAGAGTGTGTGAGTGAGTGGGGGCTGGGGAGGTGGATGGAAG
GGAGAGAATCTTAAGCAGGCTCCACGTGGGGCTCCATCTCACACCCCTGAGATCATGACCCAAGCCAAAATCAAGAGTCA
GATGCCTAACCGACTGAGCTATCTAGGCTCCCATTGTGATGAGAACTTTTAAGATCTACTCCCTTAGCAATGTTCAAACA
CACAATACAG-TATTGTTAACTATAGTT---AGGC--------------------------ATTTTTAATTGATAATGTC
ACA---TATAAACTGGTAATTTTTAGTTGAATAGGCAGTTTACTAAATAAAA-TC
>Felis_catus
CAAACTAATTCAG---CAACAAATACTTGTTTGAGTTTATACACATACAA-ATACTTAGGC---A---TTTTA-TTTTTT
AAACATTTAAAA-----------------------ATTAAGATATAATCAACTTAT-AAC-----ATTAGTTTCAGGTAT
ATAACATAGTGGTTTGATATTTGTATATAT--------------------------------------------------
-----------------------------------------------------------------TGTGAAATGATTAC-
--AACAAGTTTAGTTAAT--ATCTGTCAC----------------------------------------CACACAGTTAC
AAATTTAGTTTTTC------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------TTGTGATGAGAAGTTTTAGGATCTACTCTCTTCACAACGTTCAAACA
TACAGTACAGTTATTATTAATTACAATC---AGGC---------------------------ATTTAAATTAATAATGTT
ACA---TATAAACTGGTACTTTTTAGTTGAGCAGGCAATTTACCAAATAAAA-TC
>Manis_pentadactyla
CTAATTAATTGGG---CAACAAATACTTGTTTGG----GCATACATACAATATACTCACGC---A---TTTTAGTTTTTA
AATTTTTTTAAA-----------------------ATTGAGATATAACTGACATAT---------ATTAGTTTCGGGTGT
ATAA--TAGTGATTAGACATTTGTATATAT--------------------------------------------------
-----------------------------------------------------------------TGTG-ATTGATCCCC
ACAATAAGATTAGTTAAT--ATCC-------------------------------------------------------T
AAATTTGTTTCTTC------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------CTGTGATGAGAACTTTTAAGATTGACTTTCTTGGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---------------------------NNNNNNNNNNNNNNNNNN
NNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>Sus_scrofa
CAAACT-------------CAAAAACTTGTTTTGCCTTATGCACGT--ATTATATTCAGGC---CTTTTTTTTTTTTTTT
TACTTTTTAAAA-----------------------ATTGAGATATGACTGACATAT-AACACT--GTTTGTTTTAGGTGT
ACAACATAGTGACTCAATATTTGTATGTAT--------------------------------------------------
-------------------------------------------------------------ATACTGAGAAATGAGCACC
AAAATAAGTCCAGTTAAC--ATCCATCACCA--------------------------------------CATATCGTTAC
AAATTTATTTTTTC-----------------TGCAACACAGGATCTGAGCCATGTCTGTGACCCATACCACAGCTCACGG
CAATGCCGGATCCTGAACCTACACAGCGAGGCCAGGGATCAAACACGCAACCTCATGGTTATTAGTTAGATTCGTTTCTG
CTGCGCCACAATGGGAACTCCTATTTTTTC---TTATTTTGAAGACTTTTAAAATCTACTCTCTTAGCAACTTACAAATA
TAAAATACAG-TATTATTAACTATAGTCACTAGGC--------------------------GTTTTAAATT----AAGTC
ACA---TATGAACTGGTAGTTTTCAGGTGAGTATACAGTTTACTAAATAAAA-TC
>Tursiops_truncatus
CAAACGAATTCAG---CAACAAAAATTTGTTTTGCTTTATGTATACATAACACACT-AAGA--------TTTTTTTTTTT
TACTTTTTAAAA-----------------------ATTGAGATATAATTGACACAT-AACATTACATTTGTTTCAGGTCT
ACAACACAGTGA--CAATATTT----------------------------------------------------------
-----------------------------------------------------------------TGTGAAACGATCACC
CAAGTAAGTCCAGTTAAC--ATCCTTCACCA--------------------------------------CACATAATTAC
AAATGTACTTTTTC------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------TTACGACGAGTAGTTTTAAAATCTACTCTCTTAGTAACTTTCAAATA
TAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------------------------NNNNNNNNNNNNNNNNNNN
NNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>Equus_caballus
CAAACTAATTCAG---CAACAAATATGTGTTTGGCTTTATGTGCATATAACAGATT------------TTTTA------A
AAATTATTTTTA-----------------------ATTGAGATATAATTGACATAT-AACATTATATTAGTTCCAGGTAC
ACAACATAGTGAGTTGATATTTGAATATAT--------------------------------------------------
-----------------------------------------------------------------TGTGAAATGATCGCC
ACAATAAGTCTAGTTAAT--GTCCATCAC----------------------------------------CACAGAGTTAC
AAATTTATTTTTTC------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------TCATGATGAGAACTTTTAAGATCTACTCTCTTAGCAACTTTCAAATG
TACAATACAG-TATTGTTAACTATAATC---AGGC--------------------------GTTTTAAATTGATAATGTC
ACA---TATGAACTGACAATTTTCAGTTGAGTATGTGGTTTACTAAACAAAA-TC
>Ceratotherium_simum
CAAACTAATTCAG---CAATAAATACTTGCTTGGCTTTATGTACATACAACATA----GGT---GTTATTTTA-------
-AATTGTTTTTA-----------------------ATTGAGATATAATTAACATAT-AACATTATATTAGTTCCAGGTGC
ATAACATAGTGATTCAATATTTGTATATAT--------------------------------------------------
-----------------------------------------------------------------TGTGAAATGATCGCC
ACAATAAGTCTAGTTAAC--ACCCATCACCA--------------------------------------CATATAGTTAC
AAATTTA--TTTTC------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------TTATGAAAAGAACTTTTAAGACCTACTCTCTTAGCAACTTGCAAATG
TACGATACAG-TATTATTAACTACAGTC---AGGT--------------------------GTTTTAAATCGATAATGTT
ACA---TATGACAGGACAATTTTCAGTTGAGTATGTAGTTCACTAAATAAAG-TC
>Myotis_myotis
CTAACTAATTGAA---CAACAAATACTTATTTGGGTTTATGCACAT-----ATACTCGGGC---A----TTTATTTTTTA
AAAAATTGT--A-----------------------ATTGAGATGTAATTGACATAT--------TATTAGTTTCAGATGT
ACAACACAGTGATTTGATATTTGCATATACAGGGCTGGGCAAAAGTAGGCTTACAGTTGTTCATATGGGAAATAATATAA
TAATAAATAACAATGCAAAAAGAAACTCACATACTCACAACTGTAAACCTACTTTTACCCATCCCTGTGAAATGGTCACC
AGAATAAGTCTAGCTAAC--ATCTGTCATCA--------------------------------------CATATAGTTAC
AAATTTAA-TTTTC------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------TTGTGATGAGAACTTTTAGAACCTATTCTCTTAGCAACTTTCAAATA
TACAACACAT-TATAATTAACAATAGCC---AGGC--------------------------ATTTTAAGTTGATA---TT
ACA---AATGAACTGGTAATCTTCA------------GTTTACTAAATAATA-TA
>Rousettus_aegyptiacus
CAAATTAATTGAG---CAACAAATACTTGTTTGGGTTTATGTACATATAATACACTCAGGC---A---TTTTA---TTTA
ATTTTTTTTTTA-----------------------ATTAAGAAATAATTAACATAT-AACATCTTATTAGTTTCAGGTGT
ACAACACAGTGATTTGATATTTGTGTATAG--------------------------------------------------
----------------------------------------------------------------------------CAC-
------AGTCTAGTTAAC----ACGTCACCA--------------------------------------CACACAATTAC
AAATTCATTTTTTT------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------------------------NNNNNNNNNNNNNNNNNNN
NNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>Condylura_cristata
TAAATTAATTCAT---CAGCAAATAATAATTTGGCTTTGTGGACATACAATATACTCGAGT---G---TTTTA--AATCA
ATCATGTCACCA--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------TATCAACGGGGAACTTTCAGCTGAATATACAGTTTGCTA---AAAA-TC
>Erinaceus_europaeus
TGAATTAATGTAGCAACAACAAATACTTGTTTGGCTTTCTGGATATGCAACATTTACAG-----A---CTTTA--AATGA
ATAATGCTACCA--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------TTTTAACTAGCAATTTTCAGTTAAATGTGCAGTTTACTAAATAAAAGCC
>Homo_sapiens
AAAACTAATTTAG---CAACAAATACTTACATGGTTCTGTGGACATGTAACATCCCAAGGT---G---TTTTA--AATTG
ATAATGTCACCA--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------TATGAACTGATAATTTTCAGTTGAACATACAGTTTATTCTATAAAA-TC



Dog525_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------------------------------------------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAA
AAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATATACGTATA-CAT----TG-TGAAATGATTACCACAATCA
AGCTAATTAACATATCCATCACCTCACATAGTTACCATTTTTTTGTGT-----------------GTGGTGAGAACACTT
----------------------------------------------------------------------------
>Canis_familiaris
TTGAGTTGC--TAGCCAGCAGAAC----TTGCCCCTAGTTATTCCTGTCTCTC-AAGACTTCTGA-GGGG---TAAGCCA
TTCCCTTA--------------------------------------TTTTATTTTTTATTGAGATATAATT----AACAA
TA-TCGTATTAGTTTTAG--ATGCAATGTAATGACTTGGTATATTTGTA-GAT----TGAAAAAATGATTACTACATTAA
GTTTAAT------ATCCATCACCACAC--AGTTAC-ATTTTTTTTTTC-----------------CTT------------
---TAA-ACCATTCAC-TTT---CAAAGAGTACTGACAAAGCCTAGTTTTGT---TATCTGGGAAGACTAGCTTAC
>Felis_catus
TTGAGTTAC--TGGTCAGCACAAC----TTGCCCCTAGGTATTCCTGTGTTTTGAAGACTTTTGA-GGGG---TAAGCCA
TTCACTTA------TT----------------------------TACTTTATTTTTTATTGAGATATAATTGACATATAA
CA-TTGTATTAGTTTTAGGCATACAACATAATGACTTAATATG--TGTA-GAT----TG-CAAAATGATTACTGCGGTAA
GTTTAGTTAAC--ATCCATCACAACACATAGTT-CCATTTGTTTTTTC-----------------CTT------------
---TAA-GCCATTCAC-TTC-----AAGAGTACTGTCAAAACCTAGTTGTGT---TACCTGGGAAGACCAG-TTAA
>Manis_javanica
CTGAGTTGC--TGCCTAGCACCAC----TCACCCGTAGACAGTACTGTTTTTC-AAGGCTTCTGAAGGGG---CAAGCCA
TTCACTTT------ATTTGTTTGTATTT----------------TGCTGTATTTTTTATTGGGATATAATTAACATATAA
CA-TTGTATGAGGTTTAGGTGTACAATGTGATGGTGTGATACATGTATA-TTT----TG-CAAAATGATTACTACAGTAA
GTTTAGTTAAC--ATCCATCACCATGCATGGTTT-------TTTTTTT-----------------TTT------------
---TAAAGCCATTCAC-ATT---AAAAGACTGCTTATAAAACCT---CGTGT---TACCTGGGAGGACTAGCTTAA
>Sus_scrofa
CTGAGTTCC--TGCGCAGTATCAC----TTGCCCCTAGCTATTTCTGTCTTTT-GAGACTTCTGA-GGGG---TAAACCA
TTTACTTA------CTTTATTTATA----------------------TTTCTTTCTTATTGAGATATGAATGACGTACAA
CA-CTGCATTAGTTTTAGCTATGTGACGTAATGATTTGATATATGTATA-TAG----TT-CAAAATGACTATTACCAC--
-----GTTAAC--ATTCGTCATCATACGTAGTTGTCACATATAGTTGCAGGGTTGTTCTGTTTTGTTT------------
---TTT-GCCATTCAC-TTT---AAGAGACCGTTGACAAAACCTGGTTGTGT---TACCTGGGAGCATTAGCTAAA
>Bos_taurus
TTGAGTTGC--TGCCCAGCAACAT----TTGCCTCTAGATATT--TGTCTTTC-AAGACTTCTGA-GAAG---TAAGCCA
TTTACTTT------ATGTTT------------------------TTCTTTCTTTCTTATTGAGATATGGTAGACATATAA
CA-GTGTATTAGTTTTAGGTGTATAATGTAATGATTTTATATGTGTATATTAT----TT-TGAAGTG-CAACCACAATAA
GTTTAGTTAAT--ATCCATCACCATACATATTTGCAG--------TTT-----------------TTT------------
---AAA-GTCATTCACTTTT---AAGAGACTACTGACAA-------------------------------GCTTAA
>Equus_caballus
TAGAGTTGC--TGCCCAGCGCCAC----TTGCCACTCGATATTCCTGTCTTTC-AAGACTTCTGA-GGAA---TAAGTCG
TTCACCTT------ACTTATTTAAT-------------------TGCTTTATTTTTTATTGAGATATAATTGACATATAA
CA-TTGTATTAGTTT------------------------------TATA-TAT----TG-CAAAATGATTCCT---ATAA
ATTTAGTTAAC--ATCCATCACCACACATAGTTACAA----TTTTTCT-----------------TTT------------
---TAA-TCCATTTCC-TTT---AAAAGGCTACTGACAAAACCTAGTTATGT---TACCTAGGAGGCCTAGCTTAA
>Ceratotherium_simum
TTGAGTTGC--TGCCCAGCGCCAC----TTGCCACTAGATATTCCTGTCTTTC-AAGACTTCTGA-GGAG---TAAGCCA
TTCACCTT------ATTTAATTAATTAAT---------------TAATTAATTTTTTATTGAGATATAATTGACATATAA
CA-TTGTATTACTTTTAGGTAGACAACATAATGATTTGATATGTGTATA-TAT----TG-CAAAATGATTACCATAA---
-----GTTAAC--ATCCATCACCACACATAGTTACAATTTTTTTTTTT-----------------TTT------------
---TAA-TCCATTCCT-TTT---AAAAGACTACTGACAAAGTCTAGTTGTGT---TACCTGGGAGGACTAGCTTAA
>Myotis_myotis
TTGAGTTGCTGTGCCCAGCACCAC----TTACCCCTAGATATTCCTCGCTTTC-AAGACTTCTGA-AGGG---AAAGCCA
TTCCCTCC------CCCTCCTTTCCTCCTTCCTCCCTTCCATGGTATTTATTTTTTTATTGAAATATAATTGACATATAA
CA-TTATATTCGTTTCAGGTAT---ACATGATGATTTGATATATGTATA-TAT----TG-CACAATGATTGCCACCATAA
ATTTAGTTAAC--ATCCATCACCACAAATAGTTAAAA------AATTT-----------------TTT------------
---TGA-GCCATTCAC-TTT---AAAAGACTACTGACAAAACCTAGTTGTGT---TACCTGGGAGGACTAACTGAA
>Rousettus_aegyptiacus
TTGAATTGA--TGCCCAGCTCTAC----TTGCCCCTAGGTATTTATGTCTTTT-AAGACTTCTGA-GGGG---AAAGCTA
TTTCCTCC---TTTCTTCCCCCACCCCCTTCTCTCCTTTCCGTGGTATTTATTTTTTATTGAGATATAACTGGCATATAA
CA-TTGTATTAGTTTTAGGTGTAAAACATAGTGATTTGATATGTGTATA-TATGTACTG-TGAAATGATTACCACAATAA
GTTTAGTTACC--ATCCATCATCGCACATAGTTTCAA-----ATTTTT-----------------TTT------------
---TAA-GTCATTCAC-TTT---AAAAGACTACTGACAAAACCTAGTTGTGT---GACCTAGGAGATCCTACCTAA
>Scalopus_aquaticus
TTGAGTTGT-------------ACA---GTGCCCCTAGGTATCCCTGCCTTTC-AGGACTT--AA-GGAC---TAAGCCA
TTCTCTTG------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------GAAAGACTACTGACAAAATCT-GCTGTGT---TCTCTGGGTGGACAAGCTTAA
>Solenodon_paradoxus
CTGAGTTGC--TGGGTAGCATCAC----TTACC-CTGGATATTCCTCTCGTTG-AAGACTTCTTA-GGAG---TAAGCTA
TTCATTTT------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------AAAAGACTGTTT-CAAAACCTACTTGTCT---TACCTGGGAGGAACAACTTTA
>Tupaia_chinensis
TTGAGTTGC--TGCCCAGCATCACTTATTTACTCCTGGATATTCCTGTCTTTC-AAGACTTCCGA-GGGA---TAAGCTA
CTTGCTTT------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------GAAAGACTACCGACAGAACCTAGTTGTGTTACTACCTGGGAGGACTGGCCTCA



Dog530_LINE

>L1_CARN7_3END
--------------------------------------------------------------------------------
-----------------GATGTAATGTA------CAGCATGGNGAATATAGTCAATAATATTGTANTAACNTTGTATGGT
GACAGATGGTAACTAGACTTATTGTGGTGATCACTTCACAATGTATACAAATGT-------------------CGAATCA
CTATGTTGTACACCTGAAACTAATATAACATTGTATGTCA----------------------------ATTATACTCAAA
TAAAAAAA------------------------------------------------------------------------
-----------------------
>Canis_familiaris
AAAACTAGGACCAGAGAT---------A---CTTC-CGAA-CTCCTTTAAA-----ATAT------TG-TATTTGCTAAA
--GAGAGAAAATCT----------CAAA-----TTTTCACAAGAAA-------AAAAA-----TTGTAACTATATGTAAT
GA-------TAACTAGACTT------GTGATCATTTCACAATATGTACAAATATGATCATTTCACAATATGTACATTTCA
CTACATTGTACATCTGAAACTAATATAATGCTAAAAGTCA----------------------------ATTATATCCCAA
TTTTTAAAAATCT--------TGTAAT--TGGTATTACTGAAAAGACCT---GGGTTATCAGCAGCCCGTGGCTATG---
------------------GGTGG
>Felis_catus
--------------------------------------------------------------------------------
-------------------------------------------------------------------AACTATA----GT
GACGGATGGTAACTAGACTT------GTGATCCCTTCACAATATATACAGATGC-------------------CGAATCA
CTACATTGTACACCCGAAACTAATGTAATGTTAAAAGTCA----------------------------ATTATATCTCAA
TTTTTAAAAATCT--------TGTAAC--GGTTATTACTGAGAAGACC--------------CTGCCCTTGGCTGCACCT
GTAGGTCTGCCGCTA---TGTGG
>Manis_pentadactyla
AAAACAAGGGCCAGAGATATAGACAGCA---CTCA-TAAAGCCACTTAAAA-----ATATCA----TGTTAT-TGC-TAA
--GAGAGTAGACCT----------CACAAATTCTCCTCACAAGAAA-------AAAGT-----TTGTAACTACCTGTGGT
GACAGATGTTAACCAGATTTACT---GTGGTCATTTCACAATATAAACAAACAC-------------------TGAATCA
ATACATTGTACACCTGAAACTAATATAATGT---ATGTCAGGTTATTATTATTGTTACTGTTTTTATTATTATTATTGAA
TTATTGAATTATTAT------TATTAT--TATTATTACTGAAAAGATCT---GGT-AATCAGCAGCCCTCTGCTGGAGTT
CTGGCTCTGCCACTAATTTGTGG
>Sus_scrofa
AAAAATAGGGCCAGAGATATAGACATCA---CTTC-TGAAGCTTCTTTAAA-----ATATGG----TATTATTTGC-TGA
--AAGAGTAGATCT----------TAAAAGTTCTCTTCACAGGAGA-------AAAAAATGTTTGTAAACTACGTATTGT
GCTGGATGTTAACTAGACATACTGTGGTGACCATTTCACAATATAT--AAATAT-------------------TGGATCA
TTATGTTATACACCAGAAGCTAACAT---GTTAGATGTTA----------------------------ATTAAACCTCAA
GAAAAAAATATGTATATG---CACCATTTTATTATTACTGACAAAATCT---GGG-AATCAACAGCCCTTGGCTGGAGTT
CTGGCTCTGCCACTAACT--GGG
>Bos_taurus
AAAACCAGAGTCAGAGAATTCGGTAGCAGCGCTCA-TGAAACT--TTAAAT-----ATATAG----TGTTGTTTTC-TGA
--GAGAGTAGATCT----------TAAAAGTTCCCATCACAGGGAA----------ACATTTTTGTCCACTATGTATGGT
GCTGGATGTTAACTAGACATATTGTGGTGATCAGTTCACAATATACACAAATAT-------------------TGGATCA
TTATTGTGTACATCTGAAGCTAATAT---GTTATATTTCA----------------------------ATTAAACCTCAA
CAAAGTATA------------TATCAG--TATTATTACTGAAAAGATCT---GGG-AACCAACAGCCCTTGGGTGGAGTC
TGGTCTCTGCCACTAATTTGTGG
>Equus_caballus
AAAACCAGGGCCAGAGATATAAACAGCA---CTTA-CGAAGCTAGTTTAAA-----ATATCT----TGTTATCTGC-AAA
--GAGAGTAGATCT----------TAAAAGTTTTTATCACAAGAAA-------AAAAA---TTTTATAACTGTGTATGGT
GACTGATGTTAACTAGACATATTGTAGTGATCATTTCACGATATATACAAATAT-------------------TGAATCA
TTACATTCTACACGTGAAACTAATGT--------ATGTCA----------------------------ATTATACTTCAA
TAAAAAAATCG----------TGTTAT--TACTATTACTGAAACAATCT---GGG-AATGAGCAGTCCTTAGCTGGAGTT
CTGGCTCTGCCACTAACTTGTGG
>Ceratotherium_simum
AAAACAAGGGCCAGAGATATAGACAGCA---CTTA-TGAAGCTGCTTTAAA-----ATATCA----TGTTATTTGC-AAA
--GAGAGTAGATCT----------TAAAAGTTCTCATCACAAGAAA-------AAGAAA--TTTTATAACTGTGTATGGT
GATGGATGTTAACTAGACATATTGTAGTGATCATTTCACAATATATACAAATAT-------------------TGAATCA
TTACATTGTACATCTGAAACTAATATATTGTTATATGTCA----------------------------ATTATACCTCAA
TAAAAAAAATATTG-------TGTTAT--TGTTATTACTGAAAAGCTCT---GGG-AATCAGCAGCCCTTGGCTGGAGTT
CTGGCTCTGCCACTAACTTGTGG
>Myotis_myotis
AAAACCAGGCCCAGAGACATAGACAGCC---CGCA-TGAGACT-----AAA-----GTAT------TGTTACTGGC---T
--GAGAGTAGAT-T----------TGAAAGTTCTCATCACATTAAA-------AGAAA-----GTGTAAGTATGCATGAT
GACAGATGTTAACTAGACACATTGTGGTGATCATTTCACCACATATACAAATAT-------------------GGAATCG
TTACATTATACACCTGAAACTTATAGGATACTATGTGTCA----------------------------GTTGTATCTCTA
AAAA-----------------TATTGTGCTATTGTTTCTGAAAAGATCT---GGG-CATCCGCAGCCCGTGGCTGGCGTT
CC--CTCTGCCACTAATTTGGAG
>Rousettus_aegyptiacus
AAAACCAGGGCCAGAGACATAGATAACA---TTCA-CGAAGCTACTCTAAA-----ATATTG----TGTTGTTTGC-TGA
--GAGTGTTGATCT----------TAAAAGCTCTCATCACATGAGA-------AAAAAA----AAAATACTATGTATGGT
GACAGATGTTAACTGGA-ATATTGTGGTGGTCATTTTACAATATACACAAATAT-------------------TGAATCA
TTACATTGCATACCTAAAACTAATATGATGTTATATGTCA----------------------------AGTACATTTCAA
CCCCCC---------------CCCCCT--TTTTTTTTCTGAAAAGATCT---GGG-AATCAGCAGCCCTTGGCTGGAATT
CCGGCTCTGTCACTAAGTTGTAG
>Condylura_cristata
AAATCCAGAGCCAGAGGAACAGATAGCA---ACCA-TGAAACTCCTTTA-------GTA-------TGTTATTATCATTA
--CTGAAAAGATCT------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------GGG-AATGGGCAGTTCTCGGCTGGCCTT
CTGGCTCTATCACTAATTGGTGG
>Homo_sapiens
AAAACCAGGGCTAGGGATATAGACAGCA---ATCAGTGAAGCTACTTTAAA-----GCAT------TG-TGTTTTTATTA
--TGGAAAAGATCT------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------GGG-----------------CTGG-GTT
CTGGCTCAGCCACTAACTCACAG
>Erinaceus_europaeus
AAAACCAAAGTGAGACACGTATTTGACC---TTCA-TGACGCTTCTTTAATAGATCAGATCGC---TGTCACTATTATTA
TTATGAACAGAGCT------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------GGG-AACCAGTGGCCCCTGACTGGAGTC
CTGGCTCTGCCACTAATTTCTGG



Dog532_LINE

>L1_CARN7_3END
--------------------------------------------------------------------------------
----------------------TTTTTT-TATTTGAGTATAATTGACATACAATGTTAT-------ATTAGTTTCAGGTG
TACAAC------------------ATAGTGATT------------CGACATTT-----GTATACATT-------GTGAAG
TGATCACCACAATAAGTCTAGTTACCA-TCTGTCACCATACAA-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---
>Canis_familiaris
AAATGATTTGTCAATAAGCACGCATAGCTGGAAC-TTGAACCCAATTTTAC---TAGAGTCCAAGTTTT---ACTTATTT
TCTTTTTACTATGAGTTAGCTA--TTTT-TATTGAGATATAACTGACATACAACATTAT-------ATTAGTTTCAGGTA
TACAAT------------------ATAATGATT------------TGATATATATTGCATGTATACT-------GTAAAA
TGTTCATCACAGTAAGTCTAGTTAACA-ACT---------------TAGACTCCAAATTTT---AAATGCTCTTCTTTC-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------TATACCAT-GTAACTTTTCCAACACCCTGGAGT
CAA
>Felis_catus
GAATGACTTGTCAATAAGTAAACATAGGTAGAAC-TTGAAACCAATTTTAC---TAGACTCCAAGTTTT---ATTTATTT
TCTTTTTACTATTACTTAGCTA-TTTTT-TATTGAGGTATAAATGACACATAACATTAT-------TTTAGTTTCAGGTG
CACAAT------------------ATGAT------------------------------TCAATATT-------ATAAAA
TGATCATCGCAGTAAGTCTAGTTAACG-TCT---------------TAGACTCCAAATTTT---AAGTGCTCTTCCTTC-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------TATACCAT-AGAGCTTTTCCAACACACTGGAGT
CAA
>Manis_pentadactyla
AAATGACTTGTCAATAAGCAGGCATAGCAGGGAC-TTATACCAACTCCCAC---TAGAGTCCAAATCTT---ATG---TG
TTTTTTTACTATGACTTTGCTGCTTTTTAAATTGAGATATGACTGACATACAACATTAT-------GTTAGTTTCAGGTG
TGCATT------------------ATATTGATTTCAGGTGTACACCATAGTTT-----GTATATATT-------GTGAAA
TTATCACCACAATAAATCTAGTTAACA-TCT---------------TAGATGCCAAATTTT---AAATGCTCTTCCTTC-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------CACACTGTTATAGCTTTTCTCACATGCTGGAGC
CAA
>Sus_scrofa
AAATGACTTGTCAATAGGCAGGCATAGCTGGGAC-TTGAACCTAACTCTAC---TGGACTCCAAATTTT---ATT----T
ATTTTTTGCTATGACTTAGCTA-TATTT-TATTGAGGCATAATTGACATACAACATTAT-------ACTAGTTTTAGGTA
TACAAC------------------AAAATGATT------------TGAAATTT-----GTATATATT-------GTGAAA
TGATCACCACAATAAGCCTAGTTAACA-CCT---------------TAGACTCCGAATTTT---AAATGTTCTTCCCTCG
GAGTTCCTGCTGTGGGGCAAAGGATCGGCAGTGTCTTGGGAGCGTTGGAATGCAGGTTCAATTCCCAGCCCACCACTGTG
GGTTAAGGATCTGGCATTTTGCTGCAGTTGTGGATTAGGTCACGACTGTGGCTCAGATCTGACCCTGGACACAGGAACTC
CAGATGCTGTGGGGCAACCAAAAAAGGAGAAAAAATATTCTTTCTTATATACCAC-ATAGCTTTTCCAACACACCGGAAT
CAA
>Bos_taurus
AAATGACTTG-----------GCATAGGTGGGACTTTGATCCCAACTCTGC---TAGACTATAAACTTT---ATT----T
ATTTTTTACTATGATTTT-CTA-TATTT-TATTGAGGTGGAATTAACACATAACATAGTGAAGAACAGGGAAGCCAAGTG
TGCTGCAGTCCATGGGGGTCACAAAGAGCGACT------------GAGCGACTGAACAACAAACAATTATGTTAGTTTCA
GGATCACAACAATAAGTCTAGTTAACA--CG---------------TAGACTCCAAAGTTT---AAATGTTCTTCCCTC-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------TCCACTGT-ATAGCTTTTCCCACACACTGGAGT
CAA
>Equus_caballus
AATTGACTTGTCAATAAGCAAGCATAGCTGGGAC-TTGAACCCAACTCT-------GACTCCAAATTTT---AT-----T
TTTTTTTACTATGACTTTGCTA-TTTTT-TATTGGTGTATAATTGACATACAATATTAT-------ATTAGTTTCAGGTG
TATAAC------------------ATAATGATT------------CGGTATTT-----GTGTATATT-------GCGAAA
TGATCACCACAATAAGTCTAGTTAACA-CCT---------------TAGATTTCAAATTTT---AAGTGCTCTTCCCTC-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------CACACAAT-ATAGCTTTTCCAACACACTGGAGT
CAA
>Ceratotherium_simum
AAAGGACCTGTCAACACGCAAGCATAGCTGGGAC-TTGAGCCCAACTCTAC---CAGACCCCAAATTTT---ATT-TTAT
TTTTTTTACTATGACTTTGCTATTTTTT-TATTGAGGTATAATTGACACATAACATTAT-------ATTAGTTTCAGTTG
TACAAC------------------ATAATGATT------------CAATATTT-----GTATATATT-------GTGAAA
TGATCACCACAATAAGTCTAGTTAACA-CCT---------------TAGACTCCAAATTTT---AAATGCACTTCCCTC-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------CATACCAT-ATAGCTTTTCCAACACACTGGAGT
CAA
>Myotis_myotis
AAATGTCTTGTCAATAAGCAGGCATCGCTGGCAC-TTGGACCTAATTCTAC---TAGACCCCAAATTTA-----------
ATTTTTTACTATGACTTTGCTA--ATTT-TATTATAGTATAATTGACATGCAATGTTAT-------ATTACTTTCAAGAG
TACAAC------------------ATAATGATT------------CAGCATTT-----GTATATATT-------GTGAAA
TGATCATCACAATAATTCTAGTTAACA-TCT---------------TAAATTCCAAATTTT---TATTGCTCTTGCCTC-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------CATACTAT-ATAGATTTTCTAACACATTG-AAT
CAA
>Rousettus_aegyptiacus
AAATGACTTGTCAAGAAACAGGCGTAGCTGGTAC-TTGAAGCCAACTTTAA---TAGACTGCAAGTTTT-----------
--TTCTTACTATGACTTTACTATTTTTT-TGTTGAGGTATAATTGACATGCGACATTTT-------ATTAATTTCAGGTG
TACAAC------------------ATAATGAAT------------CAATATTT-----GTAAATGTT-------GTGAAA
TGATCACCACAATAAGTCTAGTTAACATTCT---------------TAGATTCCAAATTTT---TATTGCTCTTGCCTC-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------CACACTAT-ATAGCTTTTCCAGTATACTGCAGT
CAA
>Condylura_cristata
AAATGGCTTGTCAATAAGCGGGGATAGCTGGGAA-TTGAACCCAACTCTAC---TAGACTCCAAATTTT-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------AAATCTTGTTCCCTC-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------TACGCCAT-ATAACTTTTCCAACACTATGGAGT
GAA
>Erinaceus_europaeus
AAAACACTCATCATTAAGCAGTTATAGATGAGAC-TTGAACCTAATGCTAT---TAGACTCCAAATGTC-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------AAATATTCTTCCCTC-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------CATGCTAT-CTAGCATTTCCAACACAATGGAGT
CAG
>Homo_sapiens
AAATGACTTGTCAATAAATAGGCACAGCTGGGAC-TTGAAACCAGCTCTAC---TAGACACCAAATTTT-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------AAATGCTCTTCCTTC-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------CATACCAC-AAAGCTTCTCCAACACACTGGAGT
CAA



Dog543_LINE

>L1MA9_3END
-------------------------------------------------------------------------TTTTTCC
AGCTTTATTGAGGTATAATTGACAAATAAAAATTGT-ATATATTTAAGGTGTACAACGTGATG-----------------
--------------------------------------------------------------------------------
-------------------------
>Canis_familiaris
TTATGTAGAATTAACAAAGGAGATGGACAAGTGGTATTAACATTAA----AGAAAAAAA------AAATC----------
AGCTTTATTGAGGTATAATTGAC-ACTAAAA-TTGTAAGATATTT---------------------CTT--TTTTTCTTT
TC---ATCAAATGTAGCTTTGTTTTGTGTTTTT-------AAACTA-----TTTTGTTGTATTTTT-----TATG-TACT
TGGATCTAGTTGTTAA-AAGTAGAG
>Felis_catus
TCTTATAGAATTAACAAAGGAGACAACCTTGTGATATTAACATTTA--------AAAAA------CAATC----------
AGCTTTATTGAGGTATAATTGATAAATAAAA-TTATAAGGTATTT---------------------AT---TTTTCCTTT
TC---ACCAAATGTATCTTGGTTTTGTGTT----------AAAGTA-----TTTTGTTGTATTTTT-----TATG-TACT
TGGATCTAGCCATTAA-AAATAGAG
>Manis_pentadactyla
TCTTGTAGAGTTAGT-------ACAGATTAGCAGTGTT-ACGTTAC---TTTTAAAAAA------GATTC----------
AGGTTTAT-------------------AAAA-TTGTAAGATATTT---------------------CTAT-TTTCCCTGT
TC---GCCAAATGTAACTTGATATGGTGTTTTT-------GAA--------TTATTTTGTATTTTTAAA--AATG-TACC
TGGATCTAG-----AA-AGGCAGGG
>Sus_scrofa
TCTTAGAGAATTAATAAAGGAGACAAAGTAATGGTGTT-CTGTTAC----TTAAAAAAA---TTTTCTTC----------
AGCTGTATTGAGGTATAATTGACAAA--AAA-TCGTAAGATATTT---------------------ATC--TTTTTGTTT
TC---ACCAAATGTAGCTTGATGTTGTGTTTTT-------AAGCTA-----TTTTGTGGATTTAAAAAA--ATTG-TTCT
TGGATCTAGCCATTAA-AAATAGAG
>Tursiops_truncatus
TCTTATAGAATGAATAAAGGAGACAGATTAGTGGTGTTTATATTAA----------------TTTTTTTC----------
AGCCGTATTGAGGTATAATTGACAAATCAAA-CTGTAAGATATTT---------------------CTCT-TTTTTGTTT
TC---ATCAAATGTTGCTTGGTGATATGTTATT-------AAGCTA-----TTTTGTTGAATTTTTAAAAAAATG-TACT
TGGATCTAGCCGTGAA-AACTAGGA
>Myotis_myotis
TCTTGTAGCATTAATAAA-GTGACAGTCTGGTGGTATT-ATATTAC----TTTCAGTCAAAAAAAAATTC----------
AGCTTTGTTGAGGTAGAGTTGACAAGTAAAA-TGGTAAGATATTTGT------------------------TTTTTCTTC
TT---GCCAAATGTAGCTTGAT---GTGCTTTT-------AAGCTT-----TTTTGTTGTATTTTT-----GATG-TATC
TGGTTCTAAACATTAAAAAATAGAG
>Rousettus_aegyptiacus
TCTTGTAGAGTTAAT-AAGGTGACAGACTGGTGATATT-ATATTAC----TTTAAAAT----TTTTTTCC----------
----------AGATATAATTGACAAATAAAA-CTGTAAGACATTTGTTTTTCT-------------TTTTCTTTTTCTTT
TT---GCCAAATGTAGCTCGATGTGGTGTTTTA-------AAGCTG-----TTTTGTTGTGATATC-----TGTGATATC
TGGTTCTAGCCATTAA-AAATAGAG
>Equus_caballus
TCTTGTAGAATTAATAAAGGTAACAGACTAGTGGTGTT-AGGGTAA----ACTC--------TCTTTTTC----------
--------------------------------------------------------------------------------
-----ACCAAATATAACTTGCTGTTGTGTTTTTAACTTGGAAATGAGTTG-TTTTATTGTGTTCTT-----GCTG-TACT
TGGATCTAGCCATGAA-AAGTAGGG
>Ceratotherium_simum
TCTTGTATAATTAATAAAGGTAACAGACTAGTGGTGTT-ATATGAA----ACTCTCTT----TCTTTTTC----------
--------------------------------------------------------------------------------
-----ACCAAATGTAACTTGATGTTGTGTTTTTAACTTTGACGTGAGTTG-TTTTGTTGTGTTCTT-----TCTG-TACT
TGGATCTAGCCATTAAAAAATAGAG
>Condylura_cristata
TTCTGTAGAATTAATAAA---------CTAGCAGTATT-ACATTAA----ACTTGTTT----TCCTTTTT----------
--------------------------------------------------------------------------------
-----CCACAATGCAACGTGATGTTGTGTTTTTCACTTTGAAATAA---------GTTGT----------------TGTA
TGCATCTAG--------AAATAGGG
>Erinaceus_europaeus
TCATATAGAAT----AAGGGTAGCAGGATAGTAGTAGT-ATATTAA----ACTCCTTT----TCCTTTTC----------
--------------------------------------------------------------------------------
-----ATCAAATTTAATTTGA-----TGTTTTTAACTTTGAAATGGGCTG-TTTTGTTGCATT--------TATG-TACT
TGGATCTAGTTATTAA-AAATAAGG
>Homo_sapiens
TCTCGTGTATTTAATAAAGCTGACAGACTAGTGGTGTT-ATATAAA----AATCTTCT----TCATTTTC----------
--------------------------------------------------------------------------------
-----ACCAACTATTACTTGATGATGTGTTTTAAACTTTGAAATGAGCTGTTTTTGTTGTATGTTT-----TATG-TACC
TAGATCTAGCCATTAA-AAATAGGG



Dog553_LINE

>L1MA9_3END
---------------------------------------------------------------------------TGTAC
AGCATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTT--AAGTGTTCTCACC
ACACACAAAAAAATGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTA-----ATCATTTCACAATG
TATACGTA--TATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCT
GGAAAAA-------------------------------------------------------------------------
---------------------
>Canis_familiaris
TCCAGCAGCGTCTTAACAGACTTCTCAAAGATAGCGCACACCGCCTT-GGG---AAGGAAGCAACGGGACGA--------
------ATGA-GATAAACAACA-----CTATTACGATCATCAAACTTGCCAAGAGACTAGATCTT--AATTATTCCAACC
AC-TAAAAAGAAATTATAATTGTGTGACTTGATAGGGGTGTTAATTA-TCATACAGCAGTA-----ATCATATTATAATG
TAGAATTG--CATCAAATCCACATACTGTACACCTTGAATTTAAACAA-TGTTAAACATCAGATACATTTCAATTGAAAA
AAAAAAATAAAGAGAAAAGG---AAGAAAGCAAAGGGACCT---TGGTTAGCAGGTCATAATCAGCTGGAATAGAACTGA
GGCCCTGCACAGAGAAGGCCT
>Felis_catus
TCCAGCAGTGTCTTAACAGACTTCTCAAAGATAGCGCACACCGCCTT-GGG---AAAGAAGCAAAGGGGCCC--------
------AGGA-AATAGACAACA-----GTATTATGATCATCAAACCTGCCAAGAGACTAGATCTC--AATTATTCCAACC
CC-TAAAAAGAAGT-ATAATTATGTGATGTGATAGGGATTCTAATTA-TCATACGATGGCA-----ATCATATTATAATC
CATAAATG--TGTCAAATCAACATGCTGTACACCTTAAATTTATACAA-TGTTAACCGTCAAATATATTTCGTTTAAAAA
AAAAAGAAAAAAGG---------AAGAAAGCGAAGGGGTCC---TGGTTAGCAGGTCACAATCACCCAGAACACAACTGA
GGCTCTGCACAGAGGAGGCCT
>Manis_pentadactyla
TCCAGTAGCGTCTTAACAGACTTCTCAAAGATAGCACACACCGCCTT-GGG---AAGAAAGCAAA-GGGCCC--------
------ACGA-AATACGTAACAGTATTGTATTATAATCATCAAACTTGCCAAGAGACTAGATATT--AATCATTCTGAAC
AT-TAAAAAGAGAT---AATTATGTGATGTGACAGGGGTGCCAATTCTTGCTACAGTGGCA-----ATCAAAATACAATG
TATAAATG--TATCAGTTTAACAT-TTGTATACCTTAAGTTTAAACAA-TGTTATATGTCATGTAGATTTCAGTTAAAAA
AAAAAAAGAAGAAGAAAGC----AAGCAAGCAAAGGGGCCC---TGGTCAGCAAGACACAACTGGCTGGAACAGAACTGA
GGCCCTGCAGAGAGGAGGCCT
>Equus_caballus
TCCAGCAGTGTCTTAACAGACTTCTCGAAGATAGCGCACACCGCCTTGGGG---AAGAAAGCAAAAGGGCCC--------
------ATGA-AATGGACAGCAATATTGTATTATAATCATCAAACTTGCTAAGAGACTAGATCTC--AA-TATTCCAACC
AC-TAAAAAGAAACAATAATTATGTGATGCTAC---------------TGCTAGAATGGCA-----ATCATATTACAACA
TATAAATG--TGTCAAATCAACATGTTGTACACCTTAAATTTACACAA-TGTTATGTGTCATATATATTTCAATTAAAAA
AAAAAAAAAA-------------AAGCAAGCAAAGGGGCCC---TGGTCAGCAGGTCACAATAGGCTGGAACAGAACTGA
GATCCTGCACAG---AGGCCT
>Ceratotherium_simum
TCCAGCAGTGTCTTAACAGACTTCTCGAAGATAGCGCACACCGCCTT-GGG---AAAAAAGCAAAAGGGCCC--------
------ATGA-AACAGACAGCAATATTGTATTATAATCATCAAACCTGCTAAGAGACTAGATCTTAAAATTATTCCAACA
AC-TAAAAAGAAATGATAATTATGTGATATGAT---------------TGCTATAATGGCA-----ATCACATTATA---
------TG--TGTCAAATTAACATGTTGTACACTTTAAATTTACACAA-TGTTATATATCAAATATATTTCAATTTAAAA
AAA--------------------AGGCAAGCAAAGCAGCCT---TGGCCAGCAGGTCACAATTGGCTGAAACAGAACTGA
GACCCTGCACAGAGAAGGCCT
>Myotis_myotis
TCCAATAGCGTCTTAACAGACTTCTCGAAAATAGCGCACACCGCCTT-GGG---GGGAAG-CAAAGGGGCCC--------
------ATGA-AAGAGAAAAAAATATTGTATTATAATCATCAAATTTGCTAAGACACTAGATCTT--AATTATTCTAACT
AC-TAAAAAGAAATGCTAATTATGTGACACGACAGAGGAGCTAATTATGGCTATAATGGCAATTTTATCATGTTACAATA
TAGAAATG--TATCAAATTAATATGTTGTAGACCTTAAATTTACACAT-TGTTATATGCCATATATATTTCAATTGAAAA
AAAA-------------------GAAAAAGAAAAGGGGCCC---TGGTCAGCAAGTCACAATAGGCTGGAACAGAATGGA
GGCCTGGCACAGAGGAGGCCT
>Rousettus_aegyptiacus
TCTAGCAGCGTCTTAACAGACTTCTCAAAGATAGCGCATACCGCCTT-GGA---GAGAAAGCAAAGGGACCC--------
------ATGA-AATAGAAAACAATATTGTATCATAATCATAAAATTAGCTTAAAAACTAGATCTT--AATTATACTAACC
AC-TAAAAAGAAAT--------TATAAGGTAATAGAGGTGCTAACTATAGCTCTAATGGCA-----ACTGTATTATAATA
CATAAATG--TATCAAATCAATATGTTGTATACCTTAAACTTACACAG-CATTATATGTCAAATATATTTCAATTAAAAA
AAAAGAAAAAAGAAAAA------AAGAAAGCAAAGGG-CCC---TGGTCAGCAGGTCACAATCAGCTGGAACAGAACTAA
GG-------------ATGCCT
>Condylura_cristata
TCCAGCAACGTCTTAACAGACTTCTCAAAGATAGCACACACGGCCTT-GGG---AAGAAAGCAAAGGGGTCC--------
------ATGA-AATCGACACTA----TTTACCATAG-CATCAAACTTGCTAAATCGCT---TAGC--ACTTATTCCAAGC
AC---ACAGGGAATTATAATTATGTGAC-TGA-GGCGATGCCTGCT--CACTACAATGCCA-----AT--TGTTATAACA
TAAAAGTG------TAACTAATACATTGTACCACTTAAATTTATACAA-TGTTATATGCTAAGTGC--TTCAATAAAAAA
TGAAAAAGGC-------------AAGAAAGCAAAGGGAACC---TGATCAGCAGATC-CCACTGGCTGGAGTAGAA-TGA
G---CTCTACAGAGAAGGCCT
>Erinaceus_europaeus
TCCAGCAGAGTCTTAACGGACTTTTCGAAGATAGCGCACACCGCCTT-GGG---AAGAAAACAATGGAACCC--------
------ATGA-ATGAGACGACAGCATTGTGTTA------TCAAATTTTCTAAAAGGCT--ATCTT--AACTATGCTAATT
AC-TAAAGGGAAGT-CTAATTATGTGGCATGGCAAAGGTGCTAAT---TGATACCGTGGCA----------ATTAAAATC
TATATATGCCTATTGAAACAGCATGTTGTACACCTTAAATTTATGCAG-TATTTCACGGCAAGTGTAGCTCAATTTAAAA
AGGGAAAGAGGAAAAAAGA----GGAAAGGCAAAGGA---------GCCACTGGTTCATGATTGGCTGGAACAGAACTGA
GGCCCTGCACAAAGGGGGCTT
>Sus_scrofa
TCCAGCAGCGTCTTGACGGACTTCTCAAAGATAGCGCACACCGCC-T-GCG-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------AAGACAGCGGACGGCTCC---TGGTCAGCAGGTCGCCGTCGGCTGGGACACACCTGA
GGGCCTGCACAGACAAGGCCT
>Bos_taurus
TCCAGCAGCGTCTTAACGGACTTCTCAAAGATAGCGCACACCGCC-T-GGG-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------AAGAAAGCAAAGGGGGCC---TGGTCAGCAGGTCACCGCTGGCTGCAGCAGAACGGA
GGCCCTGCACAG---AGGCCT
>Homo_sapiens
TCCAGCAGCGTCTTAACAGACTTCTCAAAGATAGCGCACACCGCCTT-GGG-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------AAGAAAGCAAAGGGGCCC---TGGTCAGCAGGTCATGACTGGCTGGAACAGCGCTGA
AGCCCTGCACAGAGGGGGCCT



Horse3_LTR

>ERV3-5-EC_LTR
----------------------------------------------------------------------TGTTGGAGGA
GGTCAT-------CAAGAGGACGTGACCATGACCACCGGTTGACCCGCGA--GCTGGACCCGGGCAATCGGAGGCTCCTC
ACCCCCTCC--TGTCCTTGGAATGTACGTTCCACCCGCCTTTCCNCTCCCAGA-AGCCGCTTCAAGGATACAGCCTTGAG
AGAGTAATGTGTTGTTGAGACCATCTGGACTGNGTACGTGACTGAACCCAGT-TAAGGCCTCTATATAAACTTTTAAGAT
TCTGGCGGGCGGGTGCGGAGATCTACTCATCTTGCGGCCGCCCAAGACAAGC-------CTCGTAAGTAAGTTCCCTTGC
TTATTAAACCTGCCACCTACCAATCTGGAGTGGTCTG-------------------------------------------
---------------CCTCTTTCTTCGGTCTCTCCTTGCCCTCC-------------------------GTGTACGGGGG
CCAGTTTCAGATTTCACCCGGGAAGCTCCCGAGGTTGCGAACCAACA---------------------------------
-----------------------------------------
>Sus_scrofa
GCAGCTGCCAGGTCACACCTCCCCACACTCTGCAGAGA------AGAACATG-CTGG---GGAGT-----GGTTAGAAGA
GGTCATGGGGGGAGGGGGGGA------CATGACTGCCAGTTGACCTGTGA--GCTGGA------CAATCAGAGGCACCCT
ATCCCCTCTCCTATCCTTGGAAGACACATTCTGCCCTCCATTCCCACAGTGGGAAACTGTTTCAAGGAAGTAGCCTTGAG
AGAGCACTGTGTTGTTGAGCCCTTCTGGATGGTATACCTGGCTGAACCCACT-TAAGGCCTCTATATCCACTTTCAAAAT
TCTGGCAAGCAGATATGGAGATCTGCTGGTCTCAGAGCTGCCCGAGACAGGC-------CTCATATGTAAGTTCCCTGAC
TTAATAATCTTGCCACTTGCCAACCTGGAGTGGTCTG-------------------------------------------
---------------CCTCTTTCTTTGGACTCTCCTGGCCCCTGTGTGGTTTGGGTGGGAGGTGTGGGGGTGT---GGGG
TTAGTTTCAGATTTCACCTGGGGAATCCTTCAGGATGCCAACCAGGA---GGGGC---TCTTGAAATTCCACTCCC----
------CCTGCC---CCTGTGATCCAACATAACATCTTTGT
>Bos_taurus
GCAGCTGGCATCTAACGCCTCCCCACATTTTGCAGAGA------GGAGACTGCCTAG---GGAGT-----GGTGGGAGGA
GGTCAT-------GGAGAGGA------CATGACTGCCTGGTGACCTGTGC--GCTGGACCCGAGCAATCAGAGGCTCCTC
ATCCCCTTCT-TGTCCTTGGAAAGCATGTTATGCCCACAGTTCTCACAGTGGG-AACCATTCCAAGGAAGTAGCCTTGAG
AGAGCAATGTGTTGCTGAGAC--TGTGGATGGCATACATGACTAAACCCACTGGAAGGCCTCCATACCAACTTTTAAAAT
TCTGGCAGGCAGCTGTGGAGATCTGCTAGTCTTACAGCTGCCCAAGACAGGCAGATGTAATGTAATGTAAATTCCCTGGC
ATATTAATCCTGCCACCAACCAAGAAAGAGTGGCCCA-------------------------------------------
---------------CCTCTTTCTTCTGTCTCTCCT---------------------------------GTAT----GAG
ACAG----AATTTTTACCTGGGGAACCTCTGAGGTTGCAAACTAGC----AGGAT---TCTTCAAATTTGATTTCC----
------CCTGCC---CCTGTGACCCAACAGAACATCATTGT
>Equus_caballus
GCAGCTGCCAGCTAA-ACCTCCCTGCCTTCTGCAGAGA-CTCCTGGAG--TGCCTGG---AGAGC-----TGTTGGAGGG
GTTCAT-------CAAGAGGA------TGTGACTGCTGCTTCATCTGTGA--GCTGGACCCAGGCAATCAGAGGCTCCTC
ACCCCCTCCCTGGACCTTGGCATGTACATTTCACCCACTCTTCCCATAGTGGA-AACCGTTTCAAGGACGCAGCCTTGAG
AGAGCAATGTGTTGTTGAGACCATCAGGACAGTATACATGACTGAACCCAGT-AGAGGCCTCTGTGTGAACTTTTAAAAT
TCTGGTGGGTGGATACAGAGATCTACTCATCTTGCAGCCAATCAAGACAAGC-------CTCATATGTAAAGTCCCTTGC
TTATTAAACCTGCCACCTCGCAGTCTGGAGTGGTTTA-------------------------------------------
---------------CCTCTTTCTTCAGTCTCTCCTTGCCCTCC-------------------------ATGTATAGGGG
TCAGTTTCAGATTTTACCTGAGGAACTCCTGGGGTTGGGAACCA-CA---AGAGT---TCATCAGATTCCACTCCC----
------CTGGCC---CCTGTGATGCAACATAACATCTTCAT
>Tapirus_indicus
GCAGCTGCCAGCTAA-ACCTCTCTGCATTCAGCAGAGA-CTCCTGGAG--TGCCTGG---AGAGT-----TGTTGGGCGA
GTTCAT-------CAAGAGGA------TGTGACTGCTGGTTAATCTATGA--GCTGGACCCAGGCAATCAGAGGCTCCTC
ACCCCCTCCCTTGTCCTTGGAATGTACATTCCACACGTTGTTCCCATAGTAGA-AACCATTTCAAGGACACAACCTTGAG
AGAGCAATATGTTGTTGAGACCATCTGGACAATGTTAGTGACTGAACCCAGT-AAAGACCTCTATATAGACTTTTAAAAT
TCTGGTGGGTGGATAAGGGGATCTACTCATCTTGCAGCCAATCAAGACAAGC-------TTCATATGTAAGCTCCCTTAC
TTATTAAACATGCCACCTACCGATTTGGAGTGGTTTA-------------------------------------------
---------------TCTCTTTCCTCAATCTCTCCTTGCCTTCT-------------------------GTGTACAGAGG
CCAG------ATTTCACCCAGGGAACT-CTGGGGTTGTGAACCAATA---AGAGT---TCTTCAGATTCCACTCCC----
------CCTGCC---CGTATGATCCAACATAACATCTTTGT
>Rhinolophus_ferrumequinum
GCAGCTGCCAGCTAACGTCTCCCCACATTCCGCAGAGAATGCCTAGAGAGTTCCTGG-------------------AGGA
GGTCAT-------TGAGAAAG------TGTGACCCTTGGTTGACCCGGAA--ACTGGAACTGGACAATCAAGGGCTCCTT
ACTTTCTTCCATGTCCTTGACATGTACCTTCTGCCCACTGTGCCCACAATGGT-AACCCTTTCAAGCACACAGCCTTAAG
AAAGCAGTGTGTTGTTGAGACCCTCTGGGTGATATTCATGGCTGAACCCAGT-TAAGGCCTCT-CCTAAACTTTTTAAAT
TATGATGGGTAGATATGGAGATCTACTGGTCTTA---CTGCCCAGG---------------------TAAGTTCCCTTGC
TTATTAAACCTGCCACCTACCAATCTGAAGTGTTTTA-------------------------------------------
---------------ACTCTTTCTTCAATCTCTCCTTTCCCACT-------------------------GTGTATGGGGG
CCAGTTTTAGATTTCACCCGGAGAGCTCCTGAGGTTGCAAACCA------AGAGT---TCTTCATATTCCATTCCC----
------TCAATC---CTCATAACCCGACAAAATATATTTGT
>Pteropus_vampyrus
GCAGCTGCCAGCTAATACCTCCTCACGTTCTGCAGAGA------GGAGAGTGCCTAG---AGAAT-----TGCTGGAGGA
GGTCAC-----------------------------------------TGA--GCTGGACCTGGGCAATCAGGGGTTTCTT
GCCCTCTCCC-AATCCTTGAAATGTACCTTCTACCCACCATTACAACAACGGG-AACCATTTCAAGGACGCATTCCTTAG
AGAGCAATGTGTTCTTGAGACCATGTGTGCGGTATACATGGCCAAACCCAGT-TAAGGTTTCTACATAAACTTTTAAAAT
TATGGTGAGCAGATATGGAGATATACTGGTCTTA---CTGCCCAAGACAAAC-------CTTGCACATAAGTTCCCTTAC
TTATTAAACCTGCCATGTTCCAATCTGGAATGTTTTA-------------------------------------------
---------------CTTCTTTCTTCAGTCTCTCCTTGCCCGCT-------------------------GTGTATAGGGG
CCAGTTTTAGATTTCACCCTGAGAGCTCCTGAGATTGCAAACCA------AGAGC---TCTTCAAATCCCATTCCC----
------CCTGCC---TTTATGATG----------TCTTTGT
>Manis_pentadactyla
GCAGCTGCCAGCTAACACTTCCCTG-ATCCTGCAGAGA------GGAGAGCACCTAG---ACTGT-----TGTTGCTGGA
AGTCTC-------TGTGAGGA------CATGAACACCAGG-GACCAATGAACACTGCCTCTGGGCAACCGGAGGCTCCTT
ACCTCTTCCTCTGTCCTTGG---------CCTGCCCATCATTC----ACCAGG-AAACATTTCAAGAATGCAGCCTTGAG
GGAAAAATGTGGTGTCAAGATCATCTGGATGGTATATGTGACTAAACTCAGT-TAAAGCCTGTATATAAACTTTTAAAAT
TCAGGCAGATGGGTGTGGAGATCCAGGTGT-TTGCATCCACTCAAGACAAAC-------CTTGTATGTAAGTTCTCTTGC
TTATTAAACTGGCCACCCTATCCATTAGAGTGGCCTGATCTTCCTTCCTTCCTTTCTTTCTCTGTCTCTTTTTTTTTTCT
TACTGGACTGACCCTACTCTTTCTTCATTCTGTCCTTGCCCTCC-------------------------ATATATGGAGG
CCAGTTTCCAGTTTCACCCCAGGAATTCCTGAGGTTGCAAACCAACA---AGAGT---TCCTCATATTCCACACACACAC
ACACACCTGGTC---CCCATGACCCAACATAACATCTCTGT
>Canis_familiaris
GCAGCTGCCAGCTGACCCCTCT-TGCATTCTGTGGGAA------GGAAACTGCCTGG-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------AGAGT---TCTTTAAATTCCACTCCC----
------CTAACC----CTATCACCTCACATAACACCTTTGC
>Felis_catus
GCAGCTGCCAGCTAACACCTCT-TACATTCTGCAGAGA------GGAGAGTGCCTGG-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------AGAGT---TCTTTAAATTCCACTTCC----
------CCTGCC----CTATGACCCAACATAACATCTCTGT
>Condylura_cristata
ACAACTGCCAACTAACACTACCTTGCATGCTACAGAAC------AGAGACTATCTGG-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------AAAGC---TCTTCAAACTCTACTTCC----
------TCTGTC---CATCTGAACCAAAATAACATCTTCAT
>Solenodon_paradoxus
GCAGTTGCCAGCTAGCACATCCCTGAATTTTGCAGGGA------GGAAATTCCTTGG-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------AAAGG---TCTTCAAATTCTGTATGC----
------CCTGCATAGCCTGTGACAGAACAGAATATCTTTTT
>Homo_sapiens
GCAGCTGCCAGCAAACACCTCCCTGTGTTCTTCAGAGA------GGAGAGCATCTGG-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------AGAGT---TCTTTACATTCTACTTGT----
------CCTGCC---TTTATGACCCAACACAATGTCTTTGT



Horse4_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
-------------------------------TGTTCTCACCACACACAAAAAAATGGTA-----ACTATGTGAGGTGATG
GATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATA
TATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA----------------------------------
-------------------------------------------
>Sus_scrofa
TACTAACAA-AAA------------------------AAAATCATCTTGTAACTTAACTT------------------GC
CAGTTCCCAGCTT---GAG--TTCTCTT-------------ATAGACAACAGTATTATGTTGTAACTATGCAATGTGATA
GAGGTTCTATGTATGTCTACAATGTCAATCATCCTAAAATACATAAGGGCATCAAGTTAATATGTCATAGACATTAAATT
TATATAATTT-TACACATGAACTGTA-CTTAATAG--CTAACCAGA---AAGGATTCTCAT---CAGCCACAGCAAAT--
TTTTGCAAAAGG---GCATTGGGTGT--ATATCA-GGACTCCC
>Tursiops_truncatus
TACTAAAG--AAA------------------------AAAATTATCTTGTAACTTAACTT------------------GC
CAATTCCCAGCTT---AAGTGTTCCCAT-------------ATAGACAACAATATGGTACCAT-----------------
----------------------------------------------------------------------------AATT
TATATAGTTT-TACATA----------TTTAATAA--TTAACAAAA---TAGAATTCTCAT---CAGCCATAGTGAAT--
TTGTGTAAAAGG---GCATTGTGTGT--ATTTCA-GGGGTCCC
>Equus_caballus
TACTAAAGATAAA------------------------GAAAATATCCCGTAACTTAGTTT------------------GC
CAATTCGCAGCTT---AAGTGTTCTCAT-------------ATAGACAATAATATTGTACAATAATTACATAACGTGATA
GAGGTGCTAAATACTGGTACAATGGTTATCATATTTCAATATACAAATATATCAAATTAACACATTGTACTCCTTAAATT
TATATAATAT-TATATGTGAAATATA-TTTAATAA--------AAA---GAGAATTTTTGT---CAGCTATAGCAAAT-T
TTATTTAATAGG---ATATTTAGTGT--ATTTCA---GGTCCT
>Ceratotherium_simum
CACTCAAGATAAA------------------------GAAAAGATCTTGTAACTTAGTTT------------------GC
CAATTCCTAGCTT---AATAGTTCTCAT-------------ATAGACAGCAATAACGTACTAGAATTATCTAATGTGATA
GAGGTGCTAAATGTTGCTACAATGGCAATCACATTACAATATACAAATATATCAAATTAAC---TTGTAAATCTTAAATT
TATGTAATTT-TATATGTCAAATATA-TTTA------CCAAAAAAA---AAGAATTTTCCT---CAGCCATAGCAAAT-T
TTATGCAATAGG---GCATTTAGTGT--ATTTCA---GGTCCT
>Canis_familiaris
TACTGAAGAT----------------------------AAAATATCTTGTAACTTAGATG------------------GC
CAACTCCAAGCTT---AAGAAGTCTTAT----------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------CAGCCACAGAAAAT--
-TTCATAGTAGG---GCATTGAGTGA--ATTTCA-AGGGTCTC
>Felis_catus
TACTAAAGATAAAAA----------------------AAAAATTCCTTGTAACTTACATT------------------GC
CAATTCCAAGCTT---AAGAAGTTTCAT----------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------CAGCCACAGAAAAT--
-TTTGTCATAGG---GCATTGGGTGT--CTTTCA-AGGGTCGC
>Myotis_myotis
TATTAAGGATAAA------------------------GAAAATATTGTATAACTTAGCTT------------------GC
CAATTCCCAGTTT---ATAAGTTCCCAT----------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------TCACAGTAGCAAAT-T
TTTTGGGATAGGAGTACATTCAATGT--ATTTCAAAGAA--AC
>Rousettus_aegyptiacus
TACTACAGATAAA------------------------GAAAATATCTCATAACTTAGTTT------------------GC
CCGTTCCCAGTTT---AAGAATTCTCGT----------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------CGGCCATAGCAAATGT
TTTTGTAACAGG---ACATTAAGTAT--ATTTCAGGGGGTCCC
>Condylura_cristata
CACTAAAGATCAATAACATAACTAATAAGTTAAAACTGAAAATATCATATAACTCAGTTT------------------GC
TGATTCCAAA--T---ACGGGTTCTCAT----------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------GAGCCATAGTGAATTT
TTATTTAT-------TTATTTACTTTTAATTTCA-GGGGCCCC
>Scalopus_aquaticus
CACTAAAGATCAA------------------------GAACATAACTCATGACTTAAAACTAAGAAAATCACAGTGAAAA
TAACTCCAAATAT---ACATGTTCTCAT----------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------GAGCCATTGTGAAT-T
TTTTA------------ATTTTTTTTTAATTTCA-GGGATCAC
>Homo_sapiens
TATTAAAGATACA------------------------TAAAATATCTTAAAATTTAGTTA------------------GC
TAATTTCAAGCTT---AAGGGTTCTCAT----------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------CAGTCACAGCAAAT-T
ATTTGTAATATG---ATATTTGTTAT--ATTTCA-AGAGTCCC



Horse4_LTR

>LTR21B2_EC
--------------------------------------------------------------------------------
---TGTGATATTGTGATTTATAATAAGAAATAT----------------------ATATTTGGTCTTCGTCCCCAGTTTC
TGGCACAGAGCTCCT-AAAACCCTTGGAATTTCCTAAGTGATGAGAGTGATAAAGGTGTCTTTTGTTATGTTAATGAGGT
GACTTTTGGAAAGCCNAATCACCTAAGGATGGGGGCTGGTTGCCAGTGGAGCCAACCATGTGATTAGAGGGTTGGAACTT
TCAGTCCCACCCCCCTGACCTCCGGGGAGGGG---AGAGGGGCTGGAGGTTGAAT-CAATCGCCAATGGCCAATGATTTA
ATCAATCATGCCTATGTAATGAAGCCTCCATAAAAACCCAAAAGGACGGGGTTCGGAGAGCTTCCGGGTTGGTGAACACG
TGGAGATGCGGGGAGAGTGGCGCGCCCGGAGAGGGCATGGAAGCTCCGTGCCCTTTCCCACATACCTTGCCCTATGCATC
TCTTCCATCTGGCTGTTCCTGAGTTATATCCTTTTATAATAAACCGGTGATCTAGTAAGTAAAATGTTTCTCTGAGTTCT
GTGAGCNGCTCTAGCAAATTAATCGAACCCGAGGAGGAGGTCGTGGGAACCTCTGATTTATAGCCAGTCGGTCAGAAGTA
CAGGTAACAACCTGGACTTGCGACTGGCGTCTGAAGTCCAAGGAGGGGGTCGTTGGAACCTCCAATCTGTAGCCGGTCGG
TCAGAAGCACAGGTAACAACCTGGGCTTGCGACTGGCGTCTGAAGTG--GGGGTGGGGGG---CAGTCTTGTAGGACTGA
ACCCTTAACCTGTGGAATCTGATGCT-ATCTCCGGGTAGATAGTGTCAGAATTGAGTTGAATTGTAGGACACCCAGCTGG
TGTCC-GAGAATTGCTTGTTGG--GTGTG-GGGAAAC-----------------------------CCTCCCCCAC-ACA
TTGGAATTGGGT--CCAGGAACCCA-------------------------------------------------------
------------------------
>Sus_scrofa
AGGT--------------------TCCAGAGATCAATTAATTTCCAAT-TCACCAATTCTTAAATGTTGTGT---ATCAG
---TGTGATGATGTGATTTATAATAACACACAT----------------------ATATTTAGTCTTAGCCATTGGTTCC
TGGCACATGGTTCC-CCAAATCCTTGGAATTACCTAAGTGTTAAGAGTGATAAGAGTGCCTTTTGTTATGTTTATGGA-T
GATTT-------------CCACTTGAAGATAGGGGCTGGTTGCCAGTGGAAGCAATCCTGTGATTAAACAATCAAAAATA
CTGGTCTCA-TCCCC-CAATTTGGGGGAGGGGAGAGAAGAAGCTGGAGATGGAGTTCAAT-GCCAGTAGTTGACAGTTTA
ATCAATTATGCCTGTGGAATGAAGCCTCCATTA-AAACCCAAAAGGA-----TAGGGAAGCTCCTAGGTTGGTGAATCTG
TGGAGGTGCTGGTAGGGTGAAGGTCCT-GAGGGTTCATGGAAGCTCTGTGCCCTTTTCC-CATGTCTTGCTTTATGCATC
CCTTCCATCTGTCTGTTCCTGGATTATAGCCTTTTACAATAAACTGGTAACCTAATGAGTAATATGTTTCTCTGAGCTCT
GTGAGCCTTTCTAGCAAATTAATCAAACCTAAGGAGGAAATCATGAGAACCTCTCATTTATAACAAGTCAGTCAGAAGTT
CAGGTAACAATCTGGACTCTCAGTTGTCATCTTGAGT---TGAAGTGGGTTATAGGAACCTCCTGTTTGTAGCCAGTCAG
TCAGAAGCACAGGTAAAAGCCTGTGTTTTATGTATGTGTGGTGGGAGG--ATGGCGGGGAGGATAATCTTTCAGGACCTA
GTCCTTAACCTGTGGAATCTGACACT-ATCTCCAGGTAGATAGCATCAGAATTGATTTCAATTTTAGGACACCCAGCTGG
TATCTGGAGAGTCACTTATAGGATGTATGAAGGTACCATTCTTTCCACCCCTGCCCCATCCCCTGACC-CCACCACCAAA
CTGGAATTTGGTGGGCA-GAACACAAAATA---ATCAG---AT----AAAAAA--GTT-------ATCTTTTTCAAATTC
TCATGATCCTCCCCTATCCTTGAT
>Tursiops_truncatus
AGGC--------------------TCCAGGGATAAATTTACTTCTAAAGTCATCAATTCTCAAATTTCGTGT---ATCAG
---TGTGATATTGCGATTTATAATAAGAAATAT----------------------GTATTTGGTCTTACCCTTGG-TTCC
TGGATCACA-CTCC-CCAAATCCTTGAAGTTGCCTAAGCGCAAAGAGCAAGGAAGGTGTCTTCTGTTATGTTAAAAAA-T
GACTTTTG--GA----AACCACTGAAAGATGGGGGCTGGTTGCCAGTGGAGTTAATCCAGTGATTAGAGGGTTGGAACTT
TTGGTCCCA-CGCCC-ACCTCTGGGGAAGGG---AAAGGGAGCTGCAAATGGA---------------GTCAATAATTTA
ATCAACTGTGCCTGTGTAATGAAGCCTCCATAA-AAACCCAAAGGAC------------------AGGTTGGAGAACATT
TGAAGGTTCTGGGACAGTGGAGCTCCTGGAGACGGCATGGAAGCTCCTCGCCCTTT-CC-CATGCCTTGCCCTATACATC
TCTTCAATCTG----------GGTTATGTCCTTTTACAATAAACTAGTGATCTAATCAGTGAAATGTTTCTCTGAGTTCT
GTGAGCCTCTCAAGCAAAGTAGTCCAATCCAAGGAGGAAGTCGTGGGAACCTCTCATTTATAGCTGGTTGGTCAGAAGTA
CAGGTAACAACCTGGACTCTCAGTCAGCATCCTGAGT---TGGAGGGCGTTACTGGAACTTCCAATTTGTGAACAGTCAG
TCAAAAGCACAGGTAACAACCTATGTTGTGGGGCGGGGC-----------GGGGGGGGGGAGGCGGTCTCCTAGGCCTGA
GCCCTTAACCTGTGGAATCTGACACTCTTCTCCAGGTAGACAGTGTCAAAATTGATTTGACTTGTAGGACACCCAGTCGG
TGTCCAGAAAGTTGCTTGTTGGATGTGTGAGGGAAACATCGTCTCCACCCTTGCCCCATCCCCTGACCACCAACACCAAA
TTGTAATTTCGTGCGTA-CAGCACAAAAGA---ATCAG---AC----AAAAAAT-GTT-------ATCTTTTTCAAATTC
CCATGGTCCTCCCATATCCTGGAT
>Equus_caballus
AGAC--------------------TCCAGAGATAAATTAACTTCTAAAATCACCAGTCCTCAAATTTAG-----------
---TGCGACATTGTGATTTATAATAAGGAATATTTGGTCTTCCAAATAGTTGGAGGAATTTGGCCTTCTTCCAGGATTCC
TGGCTCACAGCTCCTTAAAATCCTTGTAATTTCCTAAGTACTGAAAATGATAAAG--GTCTTTTGTTATGTTAATGAAGT
GACTTTTG--AA----AAACACCAAAGGACAGGGGCTGGTTGCCAGTGGAGCCAACCATGTAATTAGAGGATTGAAA---
------------------------------------GAGGGGCTAGAGATGGAGTTCTATCACCAAT-GTCAATGATTCA
ATCAATCATGTCTATAAAATGAAGCCTCCATAA---ACCCAAAAGACAGAGTTCGGGGAGCTCCTGGTTTGGCGAACATG
TGGAGATTCAGGAAGAGTGGCTCACCTGGAGAGAGTTTGGAAGCGCCACACCCTTTCCC-CATACCTTGCCCCATGCATC
TCTTCCGTCTGGCAGTTCCT-GGTTATATAATTTTATAACAAACCAGTAATCTAGTAAGTAAAATATTTCTCTGAGTTTT
GTGAAGCACTCTAGCAAATTAATAGAACCCCA---GGAGGTGGTGGAAACCTTTGATTTATAGCCATTCAGTCAGAAGCA
CAGGTAACAACCTGGACTTGCAATTAGCACCTTGAGT---TGGAGGGAGTTCTTAGAACTGCCAATTTGTAGCCAGTTGG
TTAGAAGCACAGGTAACAACCTGAGCTGGTGACTGGCATCTGAAGTTG--TGGTGAGGGGGGCCAGTCTTGCAGGACTGA
GCCCTTAACCTGTGAAATCTGAAACT-GTCTC--AGAAGATAGTGTCAAAACGGAGTTGAATTGTAGGACACCCAGTTGA
TGCCCAGAGAGTTCCTTGTTGGATATGTGGGGAACACCT------------------------------CCCCCCTCAAA
TCAGAATTCTGTGGGCA-GAACGCAAAAGA---CTCAG---TC------AGAAT-GTA-------ATCTTTTTCAAATTC
CCATAGTCCTCCCATCTCCCAGAC
>Ceratotherium_simum
AGGC--------------------TCCAGAGATAAATTAAGTTCTAAAATCACCAATTCTCAGATTTGGTAT---AATAG
---TGTGATATCATGATTTATCATAAGAAATAT----------------------AGATTTGGTCTTCCTCCAGGATTCC
TAGCTCACAGCTCC-TAAAATCCTTGTGATTTCCTAAGTATTGAAAGTGATAAAG--GTCTTTTGTTATGTTAATGAGGT
GACTTTTG--AA----ATACACCAAAGGACAGGGGCTGGTTGCCAGTGGAGCCAAGCATGTGATGAGAGGGTTGGAACTT
TCAGTCCTGCTCCCC-AACCTCTGGGGAGGG---GAGAGAGGCTGGAGGTGGAGTTCATTTACCAATGGTCAATGGTTAG
ATCAATGATGTCTATTTAATGAAGCCTCCACAA-AATCCAAAAGGACAAGGTTTGGAGAGCTCCTGGTCTGATGAACATG
TGAAGATTCAGGAAGAGTGGCTCGCCTGGAGAGGGCGTGGAAGCTCCATACCGTTTCCC-CATACCTTGCCCTATGCATT
TCTTCCGTCTGGCTGTTCCTGGGTTATATCGTCCTATAATAAACCAGTAATCTAGTAAGTAAAATATTTCTCTGAGTTCT
GTGAGCCACTCTAGCAAATTAATCAAACCCGA---GGGGGTCATGGGAACCTCTGATTTATAGCCAGTCAGTCAGAAGTA
CAGGTAACAACCTGGACTCGCGATTAGCATCTTCAAT---TGCAGGGAGTTGTTGGAACTGCCAATTTGTAATCAGCTGG
TTAGAAGCACAGGTAACAACCTGGGCTGGGGACTGGAGTCTGATGTGGTGGGTGGGGAGGGGCCAGTATTGTAGGACTGA
GCCCTTAACCTGTGGAATCTGAAGCT-ATCTCTGGGTAAATAGTGTGAAAATTGAGTCGAATTGTAGGACGCCCAGTTGG
TGTCCAGTGAATTGCCTGTTGGATGTGTGTGGGAAA---------------------------------GCCCCTCCAAA
TCGGAATTTGGTGGGCA-GAACACAAAAGA---ATCAG---AC-----AAAAAT-GTT-------ATCTTTTTCAAATTC
CCATGGTCCTCCCATCTCCTGGAC
>Canis_familiaris
ACGCTAAATGGAGTTAGCCTCAATTCCAGAGATAAACTAAGTTCTGAAGTCATCAATTCTCAGATTTAGTGT---ATCAT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------AC-----AAAAAT-GTT----ACCATCTTTTTCAAGTTC
CCATGGTC--CCTGCCTCCTGGCC
>Felis_catus
ATGC--------------------TCCAGAGGTAAATTAAGTGCTAAAGTCACCACTTCTCAAATTTAGTGT---ATCAG
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------AC-----AAAAAT-GTTAAAAATGATCTATTTCAAGTTC
CCATGCCCCTCTC-TCTCTTCACC
>Manis_pentadactyla
AGGC---------------------TCAGAGACAAATGAAGGTCTAATGTCACCAGTTTTCAAATTTA--GT---GTCAG
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------AC-----AAAAAT-GTTAAAACCTATCTTTTTCAAGTTC
CCACAGTCCTCCCATCTCCTGGAC
>Myotis_myotis
GGGC--------------------TCCAGAGATAA----AGCTCTAAAGTCACTGATTCTCAAATTTGGTGC---ATCAG
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------AC------AAAAT-GAT-------ATCT-TTTCAAATTC
CCATGGTCCTCTGGTCTCCAGTAC
>Rousettus_aegyptiacus
AGGC--------------------TCCAGAGATAAACTAAGTCCTAAAGTCACCAATTCTCAAATTTAGTAC---ATCAC
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------AC------AAAAT-GAT-------ATTTTTTTCAA----
--ATGGTCCTCCCCTCTCCTGGAC
>Condylura_cristata
AGA---------------------TCCAGAGATAAATTAACTTCTAAAGCTACCAATTCTCAAATATAATGT---AACAG
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------AG------AAAAT-GAT-------ATCTTTTTCAAATTC
TTACTGTCCCCCAATCTTTTGCTC
>Sorex_araneus
AGTC--------------------CTTAGGGAAAGCTTA--CTCTAAAGTCAAAAATTCTCAAATGAAAAAT---ATAAA
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------GA------AAAATGGTT----ATTATCTTTTTCATATTA
TCCTGGTATTCCTATCTTCTGATG
>Homo_sapiens
AGAC--------------------TCCAGAGATAAATTAAACTCTAAAG-CACCAATTCTCAAATGTAGTGT---ATCAT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------ACAAAAAAAAAAT-GTTAAAAATTATCATTTGCAGACTT
CTGTGGTTCTCCCA--TTCTGGAC



Horse6_LINE

>L1MA9_3END
-------------------------------------------------------------------------------G
GTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTA
TACCTCAATAAAGCTGGAAAAA----------------------------------------------------------
------------------------------
>Sus_scrofa
TCATGATGCATTAATCTTATGAT--GAGT----AAAGCAAAAATGTTACAAGAGATTT---AAAGTAGGAATTAGA----
---------------CATATTCAAATATTAAATCATTACGTTGACTACCTGAAACTAATAT----ATTATGTGTCAACTG
TATCTCAATAAAATT--AATTAACTG---AAAT---AAAACACAAGTTGGA---ATGATAAAAGGAATAAGACAACTATC
TAAACA---GCATAGCCCT-AGTCACTGAA
>Bos_taurus
TTAGAATGTGTTAGTCTCATAATTTGAGT----AAAGCAAAAATGTCAGAAAAGATTT---AAAATATAAGTTGGA----
---------------TACATACAAATACTGAATCATCATGTTACATATCTGAAACTCATAT---------GTGTCAACTA
TATTTCAATAAAATT--AATTAACTAGTTAAAT---AAAATATGAATTGGA---ATGCTAAAAGGAATAAGACAACTATC
TAAAAA---GCATATCCCT-GTTCACTGAA
>Equus_caballus
TCAGTACGCATTAGTCTTA------GAGT----AAAGCAAAAATGTTAGAAAAGATTT---AAAATACAAGTTGGA----
---------------TATATACAAATATTGAACCATTATATTGTACACCTGAAACTAATA-----------TGTCAACTG
TGTCTCAATAAAATA--AATTAGTTAATTAATT---AAAATACAAGTTGGA---ATCCT-AAGGGAATAAGACAACTACC
TAAATA---GCATAGTCCT-ATTCATCAAA
>Tapirus_indicus
TCAGTATACGTTAGTCTCATAATGAGAGT----AAAGCAAAAATATTAGAA-AGATTT---AAAAT--AAGTTGAA----
---------------TATATACAAATATTAAATAATTACGTTGTACACCTGAAACTAATA-----------TGTCAACTG
TGTCTCAATAAAATT--AATTAATTAATTAATT---AAAATACAAGTTGGA---ATCCTAAAGGGAATAAGACAACTATC
TAAATA---GCATAGCCCT-GTTCATTAAA
>Canis_familiaris
CCAGAATGCATTAGTCTTATAATCAAAGT----AAAGCAAAAATGTTTGAAAAGATTT---AAAACACAAGTTGGA----
--------------------------------------------------------------------------------
------------------------------------------------------ATCCTAAAAGGAATAAAACAACTGTC
TAAATA---ACATAGCCCTGGCTTATCAAA
>Felis_catus
TCAGAACACATTAGTTTTATAATCAGAGT----AAAGCAAAAAGGTTTGAAAAGATGT---AAAACACAAGTGGGA----
--------------------------------------------------------------------------------
------------------------------------------------------ATCCTAAAGGGAACAAAACAACTGTC
AAAATC---ATATAGCCCTGGTTCATCAAA
>Manis_pentadactyla
TCAATATGCATTAGTCTTGCAATCACAGTAAAAAAAGCAAAAATATTAGAAAATATTT---AAAATACAAGTTGGA----
--------------------------------------------------------------------------------
------------------------------------------------------ATCCTAAAGGGAATAAAACAACTATC
TAAACA---ACACAGCCCT-GATCATCAAA
>Myotis_myotis
TCAGTATGTATTAGTCTTATAATCAGAGT----AAAGTAAAAATGTTAGAAAATATTT---AAAATACAAGTTGAA----
--------------------------------------------------------------------------------
------------------------------------------------------ACCCTAAAGGGAATACAACAACTATC
TAAATAAATAATTAACTCT-ATTCATAAAA
>Rousettus_aegyptiacus
TCAATATGCATTGGTCTTATAATCAGCAC----AAAGCAAATATGTTTAAAAGGATTT---AAAATACAAGTTGGA----
--------------------------------------------------------------------------------
------------------------------------------------------CTCCTAAAGGGAACAA---AACTATC
TAAATA---ACATA-CCCT-GTTCATCAAA
>Condylura_cristata
TC-TTATGTATGAGTCTTATAATCAGAAT----AAAACAAAAATATTGAAAAAAATAA---AATACAGTGGTATGT----
--------------------------------------------------------------------------------
------------------------------------------------------ATCCTGAAGCG--CATAATAACTATT
TAAGTA---GGATAGCCCT-TTTCAACAAA
>Solenodon_paradoxus
TCAATATACATTAGTTTTATAATAAGAAT----AAGACAAACATGTTAGAAA----AA---AATGTACTAGTTGGA----
--------------------------------------------------------------------------------
------------------------------------------------------ATCCTCTAGGGAATAAGACA-----C
TAAATA---AC--AGTCTT-ATTCAACAAA
>Homo_sapiens
TCAATATAAATTAGCCTTAAAATCACAGA----AAAGTAAAAAAGTTAGAAGAAATTC---AAA-TACAAGTTGGA----
--------------------------------------------------------------------------------
------------------------------------------------------ATCCTAAAAGGAATGAGACAACTAT-
---GTA---ACATAGTCCT-GTTCATCAAA



Horse6_LTR

>LTR76_EC
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------TGTAGAACCAAACTAAAA
TGGAGTCACTTATGTCAGGGACAAAATGGAGATGGTCAACGCAGGCGCATAAAGGAAACTTAACCTAACCTTACAGGAAT
TTACAGCTCTTCTCAGAAATCAGCAGAGGACACCAGCCAATCCCCAAACNCCAAGTCTGTTCACGCCATCTC-------T
GGACTTCCTTGTTCCCCTGACTCAGCTACCCTGATCCAAATAAGAAAGAAGACCACTAGGCAACCAATCAGCTGAA----
------AAAGCCAAATAACTTCCACATTTATCCCATAAAAATCCCTTAGTCTGTGAGCAACTCNGAACTCATTGCTCCCG
TAGCCTTGAGTTTCCTGGCTTGCAGGTCGAAAGCCTTGCAATAAACTCATCTTTCTGCTTTGTTTTATTCAGTGTGCAGA
GTTTGGTTTTTGACA-----------------------------------------------------------------
>Sus_scrofa
TTATGA-----------------------------------GAGAAT---------------------------------
--------------------------------------------------------------------------------
-----------------------------------ATACCATGATATGATAG---AG----------AACCAAACTAAAC
TGGAGACATTTATGTCAGAAACAACGTGGAGATGGTCAATGTGGGTGCATAATGGAAACTTAACCTAACCCTACAAGAAC
TTA-----------------CAGCAGAGTACTCCAGCTACTCCCTGAATGCCAGGTGTGTTCATGCTATCTCCAGACTCC
AGACTTCCTTGTTTTCCTGACTCAGCTACCCTGATCCAAATAAGGAAGAAAACCACCAGGCAACCAATTGGATAAA----
------AAAGCCCAATGTCTTCTCCATTTATCCCATGAAAACCCCCAAATCTGTGAGCAACTTGGAATTCA---------
-----TTGAGTTTCCTGGATAGCTGATGAAA-GCTTT---------GCATCTTTTTGCTTCATTTTATTCAGTATGCAGA
GTTTGGTTTTTGACA---TG-TG---GAAAGAACACCAAGGTAAGAGCCAGAAAACCTTGC----CTCCAGTTCAGTCTT
>Tursiops_truncatus
TCATGAAGTCTTCACTTAAATATTCAGCAAAGC-TGATGAAGAGAAC---------------------------------
--------------------------------------------------------------------------------
-----------------------------------GTACCATGATATGATGA---AGTA---TGTAGAGCCAAATT--AG
TGGAGTCACTTATGTCAGAGACAGAATGGAGATGGTCAGTGCAGGAGCATAATGGAACCTTAACCTAACCATACAGGAAC
TTACAACTCTTCTCAGAAATCAGCAGAGCAAGACAGCCACTCCCCAAATGCCATGTGTGTTCATGCTATCTC-------C
AGACTTCCTTGTTCTCCCAACTCAAGAGTCCCTAATCCAATAGGGAAGAAGACCTCTAGGCAACCAATAATCTGAAAAAA
AACCCCAAAACTAAATGACTTCTACGTTTACTGCACAAAAATCCCCTAGTCTGTGAGTAACTTGGAACTCATTGCTCCCA
TCGTCTTGAGTTTCCTGGCTCGCTGATGGAA-GCTTTGCAATAAACTCATCTTTTTCCTTTGTTTTATTCAGTGTGCAGA
GCTTGGTTTTTGACA---CGAAG---AAAAGAGTCCTGAGTTGGGAGCCAGAAAACCTAGT-----CTCAGTCTAGTCTT
>Equus_caballus
TCATGAAGTGTTCAGTTAACTATTTAGAAAAACTTGAAGAAGGGGAG---------------------------------
--------------------------------------------------------------------------------
-----------------------------------GTACCATAATGTGATGA---AGTA---TGTAGGACCAAACTAAAA
TAGAACCACTTA-GTCAGGGACAAAATGGAGACATTTAATGCAGGTACATAAAGAAA--TTAACCTAAGCTCACAGGAAT
TAACATTTTTTCTCATAAATCAGCAGAGGACACCAGCCAATCCCCAAAGGCCGGGTCTGTTCCTTGCATCTC-------T
GGGCTTTCTTGTTCCCCTGACTCAGCTACCCTGATCCAAACAAGGAAGAAGACCACTAGGCAACCAATCAGCTGGA----
------AAAGCCAAATCACTTCCCCATTTACACCATAAAAATTCTCTAGTCCGTGAGCAACTCGGAACTCATTGCTTTCC
TAGCCTTGAGTTTCCTGGCTTGCTGGTGGAAAGCCTTGCAATAAACTCATCTTTCTGCTTTGTTTTACTCAGTGTGCAGA
GTTTGGCTTCTGACA---AG-TA---TTAAGAGCACTGAGTTAAGAATCAGGAGACCTTGC----CTTCAGTACAGGCTT
>Ceratotherium_simum
TCACGAAGTCCTCACTTAAGTACTTAGCAAAACTTGAAGAAGGGAAG---------------------------------
--------------------------------------------------------------------------------
-----------------------------------GTACCATAATGTGATGA---AGTA---CATAGGACCAAACTAAAA
CAGAGTCACTTA-GTCAGGGACAAAAGGGAGACAGTCAATGCAGGTGCATAAAGAAAACTTAACCTAATCTCACAGGAAT
TCACAACTTTTCTCAGAAATCAGCAGAGGACACCAGGCAATCCCCAAATGCCAGGTCTGTTCATGCCATCTC-------C
AGACTTCCTTGTTCTCCTGACTCAGCTACCCTGATCCAAAC---GAGGAAGACTTCTAGGCAACCAATCAGCTGAA----
------AAAGCCAAATAACTTCCCCGTTTACCCCATAAAAATCCTTTAGTCCATGAGCTACTCGGAACTCATTGCTCCCA
TAGCTTTGAATGCCCTGGCTTGCTGGTCGAAAGCCATGTAATAAACTCATCTTTCTGCTTTGTTTTACTCAGTGTGCAGA
GTTTGGTTTTTGACA---AA-TA---TTAAGAGCACTGAATTAGGAGGCAGGAAATCTGGC----CTCGAGTACAGTCTT
>Canis_familiaris
TCATGAAATCCTCACTTAAATATTCAATAGAACCTGAAGAAGATAAG---------------------------------
--------------------------------------------------------------------------------
-----------------------------------GTACCATGATGTGATGA---AGTA---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------GAAGGAGCACTAAGTTAGGAGTCAGGAGG------------CTGGTATAATCTT
>Felis_catus
TCATGAAATCCTCACTTAAATATTCAACAAAACTTGAAGAAGTTAAG---------------------------------
--------------------------------------------------------------------------------
-----------------------------------GTATCAGGATATGATGA---AGTA---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------GAAGGAGCACTGAGTTAGGAG-------------------TCCAGTACAGTCTT
>Manis_javanica
CCATGAAGTCCTCACTTAAATA-TCAGCAACCCTTGAGGAGGAGAAG---------------------------------
--------------------------------------------------------------------------------
-----------------------------------GTAGCACAGTGTGATAA---AGTA---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------TGAAGAGTACTGAGTTAGGAGTCAGAAAATCTGGCTTCTTTCTGGTGAAGTCTT
>Myotis_myotis
TCATGAATTCCTCACTTAACTATTCAGCAAAACTTGAAGAAGAGATG---------------------------------
--------------------------------------------------------------------------------
-----------------------------------GTACCATGATGTGATAG---AGCA---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------GGAAGAGCCCTGAGTTGGGA-TCAGGAGAGGTGGT----CTCCAGTATAGTCCT
>Rousettus_aegyptiacus
TCGTGAAGTCTTCAGTTAAATATTCAGCAAAACCTGGAGAAGAGAAG---------------------------------
--------------------------------------------------------------------------------
-----------------------------------GTATCATGATGTGAT-----AGTA---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------GGATGAGCACTAAACTGAGAGTTAGGAAACATGGC----CTCCAGTGCAGTCTT
>Condylura_cristata
TCACAAAGTTCTCACAAAAATGATCAGGGAACCTTGATGGAGAGAAG---------------------------------
--------------------------------------------------------------------------------
-----------------------------------GTACCAAGATATGCGAA---AGCA---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------GAAAGAGCACTGGGTTAGGAGTCAGGAA----------------------TCAG
>Erinaceus_europaeus
TCATAAAATTTTCACTTAAATATTCAGTAAA-TTTGAATAAAAGAAGTAAGGAGAGCAGGAAGGTGGTTCAGCTGGAGAG
GGAATACTTTGCATGTCCCTGGGTTCAAGATCTGACGCTATATGCAATGGCAAAGCCCTGCTCTAGTCTCTGTCTTTTTC
TGTCTCCTGTCTGTCTGTCTCTCAATCTAAAGGCAGTACCATCATATGATAA---AGTA---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------GGAAGAGTACTGTGCTAGGTATCAGAAAACCTGAT----CTCAGATACAGGCTT
>Homo_sapiens
TCACAAAGTTCTCACTTAACTATTCAGGAAAACTTAAACAAGAAGAG---------------------------------
--------------------------------------------------------------------------------
-----------------------------------GCACCACAATGTGATGA---GTTG---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------GAAAGAACACTGAGCTGGGAGTCAGGAAATCTAGG----CTCTAGCA-AGTATT



Horse9_LTR

>ERV1-4N-EC_LTR
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------TGAAGGGGTT
CAGAACAGGCCTCCCCAAGATGTGCCACTTTGGCATGTGGAATA-TTTTGAGCTAAAGGCAATCNAGACCCTGTGGGCTC
AAGAGAAAC-TTTTACCTCTCCCTT---------AAAGAATTTAAATTGGGGGCCTTGCCCATAATAAGAGTTATTACCA
GAAATAAATTTTTAT--------GACCTATCTGTATGGCAGGGCAAACCTCTAATTACTGAACATCTGCTCTTCTTATCA
TCCTGTGAATTACCCTC--CTCCCCTCTGAAGCCTCAGGCCCCTATCCCAT--TCCTTAGCTCAAGATGGCATATATACC
TCATTTTACCTTTTTGTCTCTGAACCTCTCATGTATGTGGGGTCTCTGACTCTCTCAT-GTATGTGGGGTTCCCGTATNT
ATGNAATTAAATTTGATTTTCTCCTGTTAATCTGTCTCATGTCAATTTAATTCTTAGACC----------AGCCAGAAGA
ACCTAGAAGGGTAGA--GGAAAATTTCTTCCTCCCCCACA----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------
>Equus_caballus
AATTATTAAAATTATAATCT-AAT---TGAAGCTA---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------ATTTTTAA----AACCTGCCCTCTA---CCAGT---TGAGAGGGAG
CAGAATATACCA-CCCAAAATGCAGCACTTTGGCATATGGATTGCTTTTTAGCCGAAGGCAATTAAGACCCAGCAGACTC
AGGAAAAGCTTTTTACCTCTCCCTTAACTGCCTAAAGGAATTTAGGTAGGGAGCCTGCACCATGAAGAGAGCTATTGCTA
GAGATAACTTTTTATATCAGAAAGACTTGTCTGCATGGCACGGCAAGCATTTGTTTATCAAACATTTG---TTCTCGTCT
TCCTGTGAACTGTCTTT--CTCCCGTTTGATGCCCCAGACCCCTAGCC-CTTCTCCTTAGCTCAGGATGGTATAGAAGCC
TCAACTGCCAACT----------------------------GCCTTTGAATCTCACAATTTTTATGGGGCTGCTGTACAT
GCGAAATTAAATTTCTTTTTCTCCTGTTAATCTGTCTAATGTCAACTTAATTATTAGACC----------ATCCG-TGGA
ACCTAGAAGGAAAGAAGGGAAAAGTTTTTCCTTCTACACAGTCAT---ACATT---CACATATTCAT-------------
---TCATTCATTCATT---CATTGTAATGTTGGC----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------TGAGCACCATATA
>Ceratotherium_simum
AA-----AAAATTATAATCT-AAT---TGAAGCTA---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------ATTTTTAA----AACCTGCCTTCTA---C-AGT---TAAGGGGAAG
CAGAATACACCA-CCCAAAATGTGCCACTTTGGCATGTGGATTG-TGTTGTGCTGAAGCTAATTAAGACCCAGCAGACTC
AGGAAAAGCTTTTTACCTCTCCCTTAACTATCTAAAGGAATATAGATAGCGGGCCTATACCAGGAAGAGAGCTATTCCCA
GAGATAACTTTTTATGTCAGAAAGACTTATATACATGGCATGGCAAGCATTTGTTTACCAAACATTTGCTCTTCTCATCT
TCCTGTGAATTGTCTTC--CTCCCCCTTGAGGTCCCACATGCCTCCCCCCTTCTCCTTAACTCAAGATGGTGTATAAGCC
TCAACTGCCAACT----------------------------GCCTTTGAGTCTCATAA-TTTTATGGGGCTGCTGTACAT
ACGAAATTAAATTTATTTTTCCCCTGTTAATCTGTCTAATATCAACTTAATTATTAGACC----------AGGCA-AAGA
ACCTAGAAGGAAAGAAGGGAAAAGTTTTCCCTCCTACATAGTCAT---A-ATT---CACTTACCCAT-------------
---TCATTCATTCATT---CGATGTAGTGTTGGC----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------TGAGCACCATATA
>Myotis_myotis
ATTCATTAAAATTACAATCT-AAT---TGAAGCTA---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------ATGTTTAA----AACTTGCCTTCTG---CAGGT---TGAGGGGGAA
CAGAACACACCA-CCCATGATGTGTCACTTTGGCAGGTGGCTTT-TTTTGAGCTGAAGGCACTCAACACCCAGCAGATTC
AGGGAAATC-TTTAGCATTTCCTGTCACTATCTAAAAGACTTTAGGAAGGGGGCCTGTCCCAGGA--AGAGCTAGTACCA
GAGATAAC--TTTATATCAGAAAGACTAATCTGCATGACAGGGCAAAATTTTGTTCATCAAATA---GCTCTTCTCATAT
TTCTGTGAATTGTCTTCCTCTCTCTCTTGAAGACCCAGGCCCC-ACCCCCTTCTCTTTAGCTCAGGATGATATGTAAGTC
TCAATTACCCACT----------------------------GCCTTTCAGTCTCATAT-TTTTATGGGGCTTCCCTACAT
ATGACATTAAATTTGTTTTAATCCTATTAATTTGTCTTACATCAATTCAATGATAAAACC----------AGCCA-ATGA
ACCTAGAAGAGAGGA-----AAAATTATTTCCCCTACTCAGTTAT---CCATT---CACCCATTCAT-------------
---TCATTCATTCATT---CCACTTACTACTATC----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------TGAGCACCAT-TA
>Rousettus_aegyptiacus
AATTATTAAAATTATAACCT-AAT---GGAAGCTA---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------CTTTTTGA----CACCTGCCTTTTG---CCAGT---TGAGGGAGGA
GAGAACACACCT-CCCAAAACGTGCTTCTCTGGCAGGTGGAGTG-TTCTGAGCTAAAGGGAAGCGGCGCCCAG-AGACTT
-GGGAAAGCTGTCTGC-TTTCTGGTGACGGCCCAAAGGAGTTCAGACAGAGC-CCTGGACCAGGG--AGAGCTATTAGCA
GAGATCACGTTTTACATCAGGAACATTTATCTGCCCAGCGGGGCAAACATTTGTTCCCCAAATATTCACTCTCCTCATCT
TCCTGTGGATCGTCTCC--CACACCTCTGACGACCCAGACCCCTACCTGCTTTTCCTTGGCTCAAGGTGGCAGGTAAGCC
T---------ACC----------------------------GCCTTGGAGTCTCACATTTTTTGTGGGGCTGCTGTACGT
AAGAAATTAAATTCATTCTTCTCACGGTAATCTATCTTATGTCAATTTGATTGTTAAACCAGGTGTTTCTAGCCA-AAGA
ATCTAGAAAGGAAGA-----AAAGCTTTCCCCCCTGCAGAGT--------------CATTCATTCAT-------------
---TCATTCATTCATT---CCATTTGATGTTGGC----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------TGAGCACGACGTA
>Canis_familiaris
AATTATTAA-ATCAGAATCTAAATCTCTGAAACTA---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------ATTTTTAA----AACCTACCATCTG---CCAAT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------CATGTATTCAT-------------
---GCCTTCATTTGTT---CCCTTTAATGTGGAC----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------TGAGCACCACAGA
>Felis_catus
AATGATTAA-ATCAGAATGT-AAC---TGAAGCTAATTTTTATTTTATTTTATTGAAAGAATTTTTTTAATGTTTATTTT
TGAGGGAGAGAAAGGGAGAGAGAGGGAGAGAGAGAGAGGGAGAGAGGGGCAGAGAGACAGGGAGACTCAGAATCCAAGCT
CTGAGCTGTCAGCACAGAAACTAACATGGGGTTTGAACCCACGAACCGTGAGATCATGACCTGAGCCAAAGTTGGACACT
TAATCGACTGAGCCACCCAGGTGCCCCAAAGCTGATTTTTAA----AACCTGCCATCTG---CTAAT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------CATG-AGTCGC-------------
---CTAGTCATTCATTTGTCCCTTTCACGTAGAC----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------TGAGTACCATATA
>Manis_pentadactyla
AATTATTAATATTATAATCT-AAT---TGAAGCTG---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------ATGTTTAA----AACCTTTCACCTG---TCAGT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------CCTG-ACTCAC-------------
---TTACTCATTCATC---CCCTTTAATGTTGAC----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------TGAGCCCTACAGA
>Sus_scrofa
AATTATTAAAATTGTAATGT-GAT---TGAAGCTA---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------GTTTTTAA----AATCTACCATCTG---CCAGT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------CACACATTCAT-------------
---TCATTCATTCATT---CATTATAATGTTGAC----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------TGAGCACCATATA
>Tursiops_truncatus
AATTATTAAAATTATAATGT-AAT---TGAAGCTA---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------ATTTTTAA----AACCTACCATCTG---CCATT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------CATTCATTCAT-------------
---TTGTTCATTCATC---CCATATAATGTTGAC----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------TGAGCACCATATA
>Condylura_cristata
TATTATGAAAACCCCAATCT-AAT---TGAAACTC---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------CATTTTCT----ACTCTGTC-TCTG---CCAAC-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------CAATCATTCAA-------------
---TGGCTCATGCATT---CCACTATCTGTT-------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------CACAGA
>Sorex_araneus
AAGTGCTAAAAATGA---CT-AAC---TGGAGCTA---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------AAACCGGCCCTTG---CTAGT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------TGTGCATTCACCCTTATTTTTGTT
TAATTATTCATTCATT---CCAGTTAATATGACCAGCATATGGAAGCTGGAGTGATAGAACAGCAAGTAGGGCGTTTGCC
TTGCATGCGGCCGACCCGGGTTCGATTCCCAGCATCCCATATGGTCCCCTGAGCACCGCCAGGGGTGATTCCTGAGTGCA
GAGCCAGGAGTGACCCCTGTGCGTTGCCAGGTGTGACCTAAAAAGAAAAAAAAATATGACCAGCATATG
>Cavia_porcellus
AATTAGTAAAACTGTAATCT-AAT---TGAAACTA---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------ATTTTTAATTTAATTTTGTCCTTTA---GCAGT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------CACATAAACTC-------------
-ATTCATACATGCATT---CAAACTAATGTTGAC----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------TCAGCAGCATAAA



Horse10_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
---------------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAG-----------
-------------------------------------------------------------------
>Sus_scrofa
CTTTCCAGGAACTGGGGGAGAAAGTGGGGAC--CCCCCATGATTAGAGTCAGCAATGTGAAGACATCAC---T---G-TT
TTCAGTTTTC------CCCCCCAGTTT---TGAGATA-AACTGACATACAGCA-CT----------------TATTATTT
TTAATTCTT---AAACT--GAGAATAAGTGATAATCCACTTTTCATGTTCCAC-T--AAAAA-CATC
>Tursiops_truncatus
CTTTCAAGGAATTGTGGTAGAAAGTGGGGACCTCCCCCATGATTACAGTCAGTAATGTTAAGAAATCAC---T---A-TT
TTCAGTTCTT------TCCCCAAGTATTATTGAGATA-AATTGACATATATCA-CTG---------------TATTATTT
TTAGTTTTT---AAACT-GGAGAATAAGTGTTAA-----TTTTTATGTCCACC-T--AAAAAACATT
>Equus_caballus
CTTTCAAGGAATTGTGGTAGAAAGTGGGGACCTCCTCCATGATTATAGTTAATAACGTTAAGAAATCAC---T--CA-TT
TTCACTTCCT---TTTTTTCCCAGTTTTACTGAAATATAGTTGACATATAGCA-TTG---------------TACTATTT
TCAGTTCTT---AAACT-GAAAAATAAGTGATAA-CCAATTTTAATTCTCTAC-C--GAAAATCCTT
>Ceratotherium_simum
CTTTCAAGGAATTGGGGTAGAAAGTGGGGACCTCTCCTATAACTATAGTTAATAATGTTAAGAAATCAC---T-------
---AGTTCTT---GCTTTTCCCAGTTTTATTGAAATATAATTGACATACAGCA-CTG---------------TATTATTT
TCAGTTCTT---AAATT-GAAAAATAAGTGTTCA-CCAATTTTAATGCTCTAC-T--AAAAAGCCTT
>Canis_familiaris
CTTTTAAGAAGCTGTAGTGGAAAGTAGGACCCTCCCCCATAATT--AGTCAATAATGTTAAGAATTCAC---T-TCA-CC
TTCAGTTCTC----------------------------------------------------------------------
------------AGGTT-GGGAAATGAGTGATAA-CCAAGTTGA--GCCCTAT-T--AAAAATCACC
>Felis_catus
CTTTCAAGGGGCTGTGGTGGAAAGCAGGGCCCTCCCCCATCATTATAGTCAGCAATGTTAACAAGTCAC---T-CCA-TT
TCCAGTTATT----------------------------------------------------------------------
------------AAACTGGGAAAATGAGTGATAA-CCAATTTTAAGGCCCTAC-T--ACAAATCATT
>Phataginus_tricuspis
CTTTCAAGGAATTGTGGTAG-AAGTGGGACCTG------TTATTGTAGTCAACAATGTTAGGAAATCAC---A-CTA-TT
TTTAGTTCTT----------------------------------------------------------------------
------------ATGTT-GGAAAATAGGTGATAA-CTAACTTTAAGGCCCTAT-T--AAAAATCACT
>Myotis_myotis
CTTTCAAGGAATTGTGGTAGAAAGAGGGGAACTCCTTCATGACTATAGTCAATAATGTTAAGAAATTAC---T-CCA-TT
TTTAGTTCTT----------------------------------------------------------------------
------------AAATT-GGAAAATAAGTGATAA-CCAACTTTAA-ACACCAA-T--GAAAATCATT
>Rousettus_aegyptiacus
CTTTTCAGG------------AAGAAGGGAACTCCCCCACAACCGTTGTCAATAATGTTAAGAAATCAC---T-CTA-TT
TTTAGTTCTT----------------------------------------------------------------------
------------AAATA-GGAAAATAAGTGACCA-CCAA-TTTAAGGCCCTACTTATTAAAATCATC
>Condylura_cristata
CTTTCAAGGAACTGTGGTAG-AAGTGGGGACAGCCTGCAAAATTATAGTGAATAACATTAAAAAAAAAA---TACTA-CT
TCCAGTTTTT----------------------------------------------------------------------
------------AAATT-GGAAAACAAGTGTTAA-TGAATATTAATGTCCTAT-T--AAAAATCAGT
>Erinaceus_europaeus
-----------------------------------------ATTATAGTCATTAGTATTAAGAAAATAC---T-CTATTT
TTTAGTTCTT----------------------------------------------------------------------
------------AAGTT-AGAAATTAGGTGATAA-CCAATATTAAAGCCCAAAGT--AAAAATCATT
>Homo_sapiens
CTTTAAAGAAATTGTGGTACAAAGTGGAGACCTCTCCCATGATTATAGTCAATAATGTTAAGAAATCAC---T-TTA-TT
TTCAAATCTT----------------------------------------------------------------------
------------ACATT-AGAAAAGAAGTAAGAA-ACAAGTTTAATGCCTTAC-T---AAAATCATT



Horse10_LTR

>LTR21B1_EC
------------------------------------------------------------------------------TG
GTACCCAATTCC--AA-----------TGTGTGTGTGGA-------GTTTTTCCCCACACCACCAAGCAATTCTCCGACA
CCAGCTGGGTGTCCTACAATTCAACTCAATTCTGA-------CACTATCTACCTGGAGATAGCATCAGATCCCACAGGTT
AAGGGCTCAGTCCTACAAGACCTGTCC-------CCACCCCCCACTTCAGACGCCAATCGCAAGTCCAGGTTGTCACCTG
TGCTTCTGACCGACTGGCTATAGATCGGAGGTTCCAACGACCCCCTCCTTGGGTTCGATTAATTTGCTAGAGCGGCTCAC
AGAACTCAGAGAAACATTTTACTTACTAGATTACCGGTTTATT-ATAAAAGGATATAACTCAGGAACAGCCAGATGGAAG
AGATGCATAGGGCAAGGTATGTGGGAAGGGGCGCAGAGCTTCCATGCCCTCTCCGGGCGCGCCACTCTCCCCGAATC-TC
CACGTGTTCACCAACCCGGAAGCTCTCCGAACCCCGTCCTTTTGGGTTTTTATGGAGGCTTCATTACATAGGCA------
TGATTGATTAAATCATTGGCCATTGG----TGATTGATCTCAACCTCCAGCCCCTCTCCCCTCCCCGGAGGTCGGG----
-------------------GTGGGACTGAAAGTTCCAAC-CCTCTAATCACATGGTTGGTTCCCC-TGGCAACCAGCCCC
CATCCTTAGGTGCTTTCCAAAAGTCACCTCATTAACATAACAAAAGACACCTTTATCGCTCTCATCACTTAGGAAATTCC
AAGGGTTTTAGGAGCTCTGTGCCAGAAACGGA-GCAAAGACCAAA--------TATATATTTCTTATTATAAATCACAAT
ATCACA---------------------------------------------------------------------
>Equus_caballus
TGCACGGTG---------TTTCACCAGGTTCTTCTTTCAAGTTCAACGCCGGTGGATAA---TGGT---TAAAAGTTCTG
GTCACAAATTAC--GA------AGTGTTGTGCATGT--------------TTCCCCACACCAACAAGCAATTCTCTGACA
CCAGCTGTGTGTCCTACAATTTAATTCAATTCCGA-------CACTATCTACCTGGAGAGAGCATCAGACCCCACAGGTT
AAGGGCTCAGTCCCACAAGAATGCCA--------CCTCCCCCCAGTTCAGAGGCCGGTCTCAAGTCCAG---------TC
TGCTTCTGACCAGCCGACAAC------------------CCCCTCTCCTTGGGTTTCATTAATTTGCTAGAGGGACTCAC
AGAACTCAGAGAAACATTTTGCTTACTAAATTACCCACTTATT-ATAAAGGGATATAACTTAGGAACAGCCAGATGGAAG
CGATGCCTAAGGCAAGGTGTG-GGGAAAGAAGGCAGAGCTTCCGCGCCCTCTCCAGG-CCACCACTCTCCCCAGATC-TC
CATGTGTTCACCAACTCAGATCCTCTCCAAACCCTGTCCTTTTGGTTTTTTATAGAGGTTTCATTATATAGGCA------
CGATTGATTACATCACAGGCCATTGG----GGACTGAAATCAATCTCCAGCCCCTCTCCCTTCCTCTGAGGTTGGAAGTT
GAGGGTAAGCGGCAGGAGAGTGGAACTGAAAGTTCCAAC-CCTCTAATCACACAGCTGGCTTCAT-TGACAAGCAGCCCC
AGTCTTTAGGTGCTTTCCAAAAGTCACCTCTTTAACGTAACAAAAGATACCTTTGTTGCTCTCATCACTTAGGAAACTCC
AAGGGTTTTAGGAGCTATGTGCTGCAAACAGAGACTTAGACCAAA--------TATATATTTCTTATTATAAATCACAAT
ATCACA---TG----GT---AAAG-AAAAGAAAAAAAGAAC----AGCAGAGAAAAAGGCCTTCCCTGGCTTCGG
>Ceratotherium_simum
TTCATGGTG---------TTTCACCAGGTTATTCTTTCAAGTTCCATGCAGATGAATGA---CGGT---TACAGGTTCTG
GTCACCAATTCT--GACATGTAGGTGTTGTGTGTGTAGG----GGGGTGGTTCTCCACACTGACAAGCAACTCTCCGACA
CAA---GGGTGCCCTACGATTTCACTCAATTCTGA-------CACTATCTACTTTGAGATAGCGTCAGATCCCAGACGTT
AAGGGTTCAGCCCTACAAGATCGCCAC-------CTCCCCTCTTCTTAAGACCCCAGTCGCAAGTCCAG-----------
TGCTTCCAATCAACCAGCTGTAGATTGGAGGTTCCAACAACCCCCTCCTTGGGTTCAATTAATTTGCTAGAGGGACTCAC
AGAACTCAGAGAAACATTTTACTTACTAAATTACCCATTTATT-ATAACAAGACGTAACTCAGGAACAGCCAGATGGAAG
AGATGCAGAGGGCAAAGTACA-GGGAAAGAATGCAGAGCTTCCATGCCCTCTCCAGG-GCACCATTCTCCCCAAATC-TC
CACGTGTTCATCAACTCAGAACCTCTCCAAACCATGTCCTTTTGGGTTTTTATAGAGGCTTTATTACATAGGCA------
CAATTGATTATATCATCGGCCACTGG----TGACCGAACTCAATCTCCAGCCCCTCTCCCCTCCCTTGAGGTCAGGGTTG
GGGGTGAGAGGATGGGGGCGTGGAACTGAAAGTTTCAAC-CCTCTAATCACACAGTTGGCTTCAC-TGGCAACCAGCCC-
-GTCTTTAGGTGCTTTCCAAAAGTCACCTCTTTAACATAACAAAAGACACCTTTGTTGCTCTCATCACTTAGGAAATTCC
AAGGGTTTTAGGAGCTCTGTGCTGCAAACAGGGACTCAGACCAAA--------TATATATTTCTTATTATAAATCACAAT
ATCACA---TG----GT---AAAGAAAAGGAAAAAAAAAAC----AGCAGA-AAAAAGGCTTTCCCTGGCTTCAG
>Condylura_cristata
TTCAC---------------------------------------------------CAA---TGA----AGCTGTTTCCA
GCCACCAATTCT--AA-------------TGTATGGAGG----------GTTCCCCACACTAAAAAGCAAGTCTTCCCTA
TCA-CACTGAATCCAAAAATTTGATTCAATTCTGCGTCTGGTAATTCTTTACTCAGAGATAACACCAGATCCCACAGACT
GAGGGTTTGGTTCCACAAGACTGCCTC----GCCCTGACCCCCACTTCAGGGG-CAGT--CAATCCCAGGTTGCAATCTG
TGCTTCTGACATTCCTGCCACACACAGGAGGTTCCAGTGACCTCCTCCTTCAATTCGATCAATTTACTAGAG-------C
AGAACTCAGAGAAACATTTCACTTACTAGATCGCTGGCTTTTTAAGAAAAGGATGTAACTCAGGAACA-CCAGATGTAAG
AGACACACA-GTCAAGGTATG-GGGATCTGGCTCAGAGTTTCCAT-CCTACTCCAGG-CAGCTGCTCTTGCTGAATC-TC
CACAAGTTCACCAACCTAGCAGCAGTCTG--CCATCTGTTCTCATGTCTTTATAGAGGCGTCTTTACATAGGTG------
CTGCTGATTAAATCATTGACCACAGG----TGACAGAACTCAGT---CATCTTCTGTTTCCTCCA-GAAAGTCAGA----
--------------TAGGGGTGGGAGGGGAAGTGCCAAT-TGTCTTATCA----------------CTGCAACCACCCAG
ACTCCC----AGTTTTCCAAAAGTAACCTCATTAACATAACAAAAGAAACTTTC-TTGCTCTCATCACTTAGGAAGTGCA
AGGGGTTTTGGAAGCTCTGTGCTGGAAACAG--ATCAAGACTAAGTGTATACTTATATATTTCTCACTATGAATCACAAT
AGAACA---TG----GA---AAAA-AAAGAAAAAGT---------AGCAAAGTAAAAGGCCTTCCCTAGCTTTGG
>Erinaceus_europaeus
GTCATGGTA---------TTTCACTAGGTTGATCTTTTGAATGCAGTGCAAATGAAT-----GGGT---GAAC-ACTGTG
GTCACCAGTTCTCCAACATCTCTGTG-TGTGTATGGGGGAGTAGAAGGAGTTGCCCAAGATAGAAAGTCAGT-TTCAATA
CCAGCTGAGTATTCACTCATTTAATTCAGTTTTCA-------CACTATTTACCTTACTGTAGCATCAAGTTCCACTGATC
AGAAAATTGGTCCTATTAGACTACTTCCCAAGGTCCTCCTTCCACTTCAGAAGCCAGTCACAAATTCTGACTGCCACTTA
TG-TGCTGAC---CTGGTCCTAGGCTGGAAGTTCCTG------TCTCCTTAGGTTCACTGAATTTTATAGAGTAGCTCAC
AGAAGCCCACAAAACACCTTACATACTGTGTTACCTATT-----ATACTAGGATATAACTCCAGAAGATCCAGCTGGAAG
AGATACATAGGACAAGGTATGGGGAAATGGGTACA------------------CAAGTGTGTCACTGTTCCCAAATTATT
TATATGCTCACTAACCAGGAAGAGCCCCCAACCACAACCTCTTGGGTTTTCATGATGGTTTCATTGCATAGGCATGAGAC
TGACTAATGAAATCAATGGCCACTGGTGATTGACTGAACACAATCTCCAGCCCCAGAACATTCCCTAGAGATCAAG----
------------------AGTGGGACTGGAAATTCCAACTCCCCTAATCACAAGGTTGTGGCCACTTTGCAATCAGTC--
--------------------------CTTCGTTAACATAACAAAAGACACCCTC----CATTCTTGACTCCAGGAAATCC
AAGGGTTTTGATTTATCTCCGCTGGAA------------ACCAAA----------------------TACAAAACCCAAT
AGCACA---AGGTAGGT---AAAGACAAGAAAACCA---------AATAGAGAAAAAGCCTTTCCCTAGTTTCAG
>Canis_familiaris
CTCC--GTG---------TTTCACCTGGATTCTCTTTCAAGTTTAATGCAGATGAATAA---AGGC--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------AAAGAAAATGAAAG-----------AACAGAGAAAAAGGTCTTTCCTCGCTGCAG
>Felis_catus
CTCA--GCG---------TTTCACCTGGATACGCTTTCAAGTTTAATGCAGACGAATCA---AGGC--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------AAAGAAGAAGAAACGGAGAAC----AAGAGGGAGAAAGGTCTTCCCTCGGTTCGG
>Manis_pentadactyla
TTCA--GTG---------TCTCACCTAGACACTCTTACAAGTTCAGTGCAGAAGAATAA---TGAT--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------AAAG-AAAAAACAACAACAACACAAAACAGAGAAAAAGGTCTTCCCTGAATTCAG
>Sus_scrofa
GTCCCAGTGTACAACAACTATCACCTGGATAC---TTCAAGTTCCCTGCAGATGACCAG---CAGT--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------AAAGAAAAGAAGAAAAAAGAA----GAGTGACAAAAAGGTCTTCCCTGGCTTCAG
>Bos_taurus
TTCACTGGG----------GTCACCTGGGTACTC---CAAATGCAATGCACATGAACAG---CAGT--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------CAAG-AAAAGAAAAGA---------AATCAAGAACAAGGTCTTCCCTGGCTTCGG
>Myotis_myotis
TTCACAGTG---------TTTCACCTGGAATCTCTTTCAGGTTCCATGCAGATGGACAA---TGGT--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------GAAG-ACAGAAAAGAAAC-------AACAGAGAAAAGGGTCTTCTCTGGGTTCAG
>Rousettus_aegyptiacus
TTTGCAATA---------TTTCACCTGGACACTCTTTCAAGTTCAACACAGTTGAACGA---TAGT--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------AAAG-AAAAGAAAAAA---------GGCAGAGAAAAAGGTTTTCCCTGGTTTTAG
>Homo_sapiens
TTCACAGTA---------TTTCACCAGGATACATTTTCAAGTTAAACCCAGATGAATAA---TGGT--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------AAAGAAAAAAAAAAAAA--------GCAAGAAATAAAGGCCTTCCCTAGCTTCGG



Horse11_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
----------------------------------GGATGAA-TAAGTTC----TGGAGATCTA-ATGTACAGCATGGTGA
CTATAGTTAATAA-TACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCACCACACACAAAAA
A-ATGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAA
ACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACC-----TCAATAAAGCTGGAAAAA-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------
>Sus_scrofa
TATATAAATTCATGGTTTT---ATTT-CAATATTTATTTCAATCTCTAGTATATAT---AATTAGTTCACAATG---TTG
TGGGTAAAGTAGGCCCCAAAGCACATA-TTTTGGTTATAAACTGA-TAT----CAGAGGTTTGTATATATACCATGATGA
CTATAGCAAATAATTACTGCATTGAATATTCAAAAGTTTCGAAGAAAGTAGATATTAAATGTCCTCTTCACAGGGAAAAC
A-TCTATTACTACGTATTGTGATGG--GTGTTAACTGGATTTTCT---GTAATCATCTGATGATA-ATCATAATATCAAA
CCATTATGTTGTGCACCTGAATCTAACATAA-TGTCACATACCAATTACACT-----TCAACTAATTTTTTAAG------
TCCCCTCTA-----AA-AAAATTCACAAGG---ATAATTGACATCAGAAAAAGGA-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-GTTATTGGAAATAGAGAT---------AA--AGGGGGGTCT
>Tursiops_truncatus
CACATAAGTCAATTATTTT---ATTT-CAATTTTTAGTTCAAATT-AAGCACATAT---AAAAAGTTCACAAGA---TAG
TGAGTGAGGGGGGTCAAAAAGTATAAACTTCCAGTTATAAACTAAGTCA----CAGGTATGTG-ATGTATAGCATTGTGA
CTATAGTTAATAA-TTACTTATTGAATATTTTAAAGTTGTTAAGAGAGTAGGTCTTAAGAGTCTTCATCACAAGAAAAAA
A-ATTGTTACAGTGTATGGTGATGG--ATGTTAACTAGACTAACCTTCGTTATCATTTTGCATTGTATC---------TA
TGGTTATTCTG-ACACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNN---NNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNN---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>Equus_caballus
TACATAAATCTATTATTTT---ATTC-CAATTTCTAATTTTAACT-TAGCAAACAC---AAAAAGTACACAAGG---TGG
TGGGTGAAGGAGGTCAAATGGTACAATCTTCCTGTTATGAAATAAGTAAGTGCTTGGGATATA-ATGTTTGGCATGGTGA
CTATAGTTAATAA-TAATGTATTGCATATTTGAAAGTTGCTAAGAAAGTGGACATTAAGAGTTCTCACTAAAAGAAAAAA
ACATTGTTACTATATATGGTGGCAG--ATGTTAACTAGACTTATTGTGGTGATCATTTGGCAGTATATGCAAATATCAAG
TCATTATGCCATACACCTAAAACTAAC--AA-TGTTATATGTCAATTATACC-----TCAAAAAATTTTTAAAAATAAAA
TATCCTCTAAA---AA-AAAGTCCACAAGA---AGAATTGACATTAATAGCTA---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----TTTGGAAATAGAAGTGTGGAGCTGAA-GAGGGAGGCCT
>Ceratotherium_simum
TATATAAATCAATTATTTT---ATTT-CAATTTCTAGTTTAAACT-TAGCACACAT---AAAAAGTCCACAA-G---TAG
TAGATGAAGAAGGTCAAAAGGTATAAACCTCTAGTTATAAGATAAGTCA----TGGGGATGTA-ATGTACAACATGTTGA
CTATAGTTAATAT----TGTATTGCATATTTGGAAGTTGCCAAGAGAGTAGATTTTAAAAGTCCTCATTACAAGAAAAAA
AATTTGTTACTATATATGGTGACAG-----ATAACTAGACTTATTGTGGTGATCATTTCACAAT--ATGCAAATATCAAA
TTATTATGTTGTACACCTGAAAGTAACATAG-CGCTGTATATCACTTATACCTTGATTTAAAAAAATTAAAAAAATAAAA
TACCTTCTAAA---AA-AAAGTCCACAAGG---AGAACTGACATTAATAGCGA---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----TTTGGAAATAGAAGTTTGGAGCTGAA-GAGGGAGGTCT
>Canis_familiaris
TACATGAATCAATTATTTT---ATTT-CAATTTCTAGTTCAAATT-TAG--CACAT------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------AA-AAAATCCACAAAG---AGAATTGACACTAATAGCAA---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----TTTGGAAATCGAAATTTGAAGCTAAA-GAAGGAGTTCT
>Felis_catus
TACATACATCAATTATTTT---ATTT-CAATTTCTAGTTCAAATA-TAACACACAT------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------AA-AAAATCCACAAGG---AGAATTGACAGTACTAGCAA---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----TTTGGAAATAGAAACTTGGAGCCGAA--GAGGAGGTCT
>Manis_javanica
TACTTAAATAAATTATATT---ATTT-CAATTTCTAGTTCAAATT-TAGCACA-AT------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------AA-AATATCAACTATG---TGGCTTTATATTAATAGTGA---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----TTTGGAGATAGGTGTTTGGAGCTGAAGGAGGGAGGTCT
>Myotis_myotis
TATATAAATCAATAACT-----ATTT-CAATGTATAGTTCAAATT-TAACACATAT------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------AA-AATATCCACAAGG---ATACTTGACATTAACGGTGA---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----TTTGGAAATAGAAGTTAGGAGCTGAG--AAAGAGTTAT
>Rousettus_aegyptiacus
TACTTAAATCAATTACTTC---ATTT-CTATTCCTAGTCC---TT-T-----ATAT------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------AA-AAAGTCCTCAAGG---AGAATGGACATTAATATTGA---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----TTTTCAAATAGAAGTTTGGAACTGAA-GAGGGAGGTCT
>Condylura_cristata
TA----AATCATTTTTTTTTAAATTT-CAATTTCTAGTTCAAATT-TAGCACATAT------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------AT-CATGTCCATAGGT---ATAAATAACATTA----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------ATAGGGATTTGGAACTGGA-GAAGAAGGGCT
>Scalopus_aquaticus
CACAT----CATTTTCTGAAAAATTTTCAATTTCTAGTTCAAATT-TAGCAAATAT------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------GA--AAGTCAACAAGG---AGAACTAATAT------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------AAATAGTGATTCAGAACTGAA-GAGGAAGGGCT
>Homo_sapiens
TACATAAAGCAATTTTT-----ACTT-CAATTTCTACTTCACAGT-TAGCACATAT------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------GTAGAAGTCCACAATG---AGAATCTGCCTTAGTGAAGTAGCTCCTTGGCTCTTCCTAATTTGTTA
GTTTTTTTCTCTTCATTCTCACTTCTCTAGCTGCTCGTGTGGTCACTTACCTCACAGCTGTCATAGATATTTATTTTCAA
ATGGACCAATTATCTCTCCTTGTCTCTGCAATGCATATTTGTCTTTTATGTGCTTTGCATTCTACCCCAGGATGTGTCAT
TTTTAAATCCAGGTATGATATAATTTGTTATACCGTAACTAAGCATTTCCAAACTCATACTTAGTTTTAAGGTGTACCAA
CAAATGTTATAATACACTAAGAACAAGGTGATGTCTTACTGTCGCACCAAAGTTTTGAGATGAATGCTACAGACATAGAA
ACAGTATAGAATGTGGCAATTATGTGGAAAATAATTATGGTTGATTTATATATAACTGGGCAATGAATATTGTGTGCAGG
TATGACATACTAAAAAGCACTTATTGTTGCTGTTGTTTCTGCAATGGTTAGTTTTATACCTTAAGTTGTCATGGACTTTG
GTGGCAAAATTGAGGGTGTTGTGGTCATATGGAGTTAGCAATTAGTGCATCACTTCATCAATCTATTTTAATTAATTGGG
TTGTGCAAAAGGTTTAGTTTGAAAAACAGAACTCTGCTACTAAAGAAAAGAAGCAAAAAGAAGTAATCATCATAATCATT
ATACAGTATATTATTAGCAGGGAAGTAAAATGATCTTTTATACATTTTAACAAATTTAGAACAAAAAATTCTAAATGAAT
CAGAAAGGTGTGCTAGTCACATCAAGTTTCCCATAACAAAATCTAGGTAAAAAGATAACATGAGGTTTAGTAAAGGCAGT
AGCAATGTAGAAAGCGGTGGGAATTAAAGCGATATATAGTAGGAAGAGCTGACAATACTCCACAACATATTTTTAAATTC
CAGGCAAAGGAAATTGGGTACGTAATTGTGCTATTGTGATACTGGAGTGCTGGAGTCAGAAAAAGAAGCAAATCTTTCTG
GAGGTGAGGGTTGGAAGAGCATTATGGTAGTTATTTTTGAAATATTTTGCTTGTTCTGCCCATAGGTGGGGAAGCTTGGT
AGGTTTTAGAAATAGAATTTTGGAGCTAAA--AAGAGGATCT



Horse11_LTR

>MER34C_CF
--------------------------------------------------------------------------------
---TGTTGAGGAGAAAAAAATTTT-CCTCTACCCTTCTAGGTTCTTCTGGCTGGTCTAAGAAT-CAAATTGACATAAGAC
AGATTAACAGGAGAAAAACAAACAAAAGTTTAATAACATATGTATACCTCCTGTATACATGGGAGAGACCCAGGAAAACT
GAGTAACTCCCCGAAATGGCCCAA--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------GCCATCACCTTAAATACCATCTC
CAGCTAAAGACAAAA-AAGATGTTGGGGGTG-GGGAGTCAGTTATGGGAGGTTACCAGGAAAAGCACAGTAAA-------
-------CAAGGGTAAGGTTGTTATGCAGATTTAAGTCCTTGCCTTC-TCCATTGAT-AAGAGTTTCTAGAGATTTAGAG
TCATCCTCCTCTTCCTGGTACAGAGAGGGAGACACCCTTAC-AAATGGAGATTTCCCTTATAAATGTAAATGTCTCTTAC
AAAAGGGTAACTTCTACTCGGTTTTCAGAGCTTCTCCTGTGTCTGCAGTTTCTTAAAAATAATCAGCCTAAAATAATCCT
TATGCCAAAGAGGCATATTTT-----GGGGTGG------CAAATTCTGCTCCCCTTCA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------
>Equus_caballus
AGTCAGTCTCTGA-GAAAAAGGCAAGGCCTAAAATAAA--ACTTAGTAT---CC----------------------ATT-
--GTGGGGAAGAAAAAATAATTTTCCCTCTACCTTTCTAGGTTCT--TGGCTGA---GGCAAC-CCCTGTAATAACAGAC
AGATTAACAGGGGGAAAACAAACGGAAG-CTAATAAC---------------------------------TAAGGATACT
GAGTGACTCCCCCAAATGGC-CAA--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------ACCCTCAGGTTAAACACCATCTC
CAGCTAAAGACAAAAGAAGACGTTGGGAGTGGGGAAGCCAGTTATGGGAGGGTAGCAGGCAAAGCACAGTAAA-------
-------CAAGAGCAAGGTGGTTATGCAGATTT--------GCCTTCTCCCATTGATAAAGAGTTTCTGGAGATTT--AG
TCATTCTTCTTTTCCTGGTACAGAGAGGGAGACATTCCCCCAAAATGGAGATTTCCCTTTTAAATGTAAATGTCTCATAT
AAAAGGGTAACTTCAGGTC-ATTTTCAGAGCTTCACCTGTGTCTGCTGTTTCTTAAAACTTATCAGCTCAAAATAATAAA
TACGCCAAAGAGACATATTTT----TGGGGTGG------CATATTTTGCTCCTCTTCA---CTGTC---AAACATT--TA
TA-TTCCCAAATAATAATCTAACTTGATTGTCAC----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------ATGGTTTA
>Ceratotherium_simum
AGTCAGTCTCTGA-GAAAAAGGCAAGGGCCAAAATAAA--ACTTAATAT---CT----------------------GTT-
--GTGGGGGAGAAAAAT-AATTTTCCCTCTACCTTTCTAGGTTCT--TGGCTGA---GACAAT-CCCTGTAATAAAAGAT
-GATTAAT--GGGAAAAACAAATAGAAGTTTAATAACACA--TATACTTCCTGTATACAAGGGCGATGCTAAGGAA-ACT
GAGTAATTCCTCCAAATGGCCCAA--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------GCCATCTCCTTAAATACCATCTC
TAGTTAAAGACAAAAGAAGATGTTGGAAGTGGGGGAGCCAGTTATGGGAGGTTATCAGGCAAAGCACAGTAAA-------
-------CAGGAGTAAGGTTGTTATGCAGATTTAAGT------CTTCTCCCATCTATAAAGAGTTTCTAGAGATGTATAG
TCATCCTTCTCTTCCTGGTACAGAGAGGGAGACATCCTTAC-AAATGGAGATTTCCCTTATAAATGTAAATGTCTCATAT
AAGAGGGTAACTTCTACTC-ATTTTCAGAGCTTCACCTGTGTCTGCTGTTTCCTAAAACTAACCAGCTCAAAATAATCAA
TATGCCAAAGAGCCATATTTT-----GAGGTGA------CATATTTTTATCCCCTTCG---CTGTC---CAACATT--TA
TA-TTCCCAAATAATAATCTAATTTGATTGTCAT----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------ATGGTTTA
>Myotis_myotis
AGTCAGTTTTTGA-GGAAAAGGCAAGGCCTAAAATAAA--ACTTAATAT---CT----------------------GTT-
--GTGGGAGAGAAAAAA---------------------AGGTTCT--TGTCTGA---GACACCTCTCCGTAATGAGAAAC
AGAATGACAGGAGAAAGACAAATAGAAAGTTAGTGTCATATATACACCT-CTGTATACAGGGGAGATACTCAGGAAAACT
GAGTAACTCCCCAAAATGGCCCTA--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------AACTCTAAATATTAGCTG
TAGCTAAAGACAAAAGAAGATGTTGGGGGAG-------CAGTTATGGGTGGCTATCAGATAAAGCAAGGTAAATAGTGTA
AGGTAAGTAAGGGTAAGGTTATTACACAGACTTATGTTCTTTCTCTCGCCCATTGAT-AAGAGTTTCTAGAAATTTAGAG
CCCTCCTTCTCCTCCTG-TACTGAGTAGGAGACACCATTAC-AAATGGAGATGTCCCTTTTAAATGTATATGTCTCTTAC
AAAAGGGTAACTCCTACT--ATTTTTAGAGCTTCCCC--TGTTGGTTGTTTATTAAAAATAACTAGATCAAAATAATCAG
TATGTCAAAGAAGCATATCTTTTTGTGGGGAGGGTAGAAGATATTCTGCTCTTTGATG---CTATT---AAAGGTGC-TA
TA-TTCCCAAATAATAACCTAATTTGATTGTCAC----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------AATGGTACA
>Rousettus_aegyptiacus
AGTTAGACTCTGA-GAAAAGGGCAAGGCCTAAAATAAA--ACCTAATAT---CT----------------------ACT-
--GTGGGAGAGGAAAATAAATTTTTCCTCTACCCCTCTAGGTTCT--TGGCTGA---GACATTCCCCTGTAATAAATGAT
GGGTTAACAGGAGAAAGAAAAACAAAAGTTTAATGACATC--TATGCCTCCTTAATACATGGGAGATTCTCAGAAACACT
GAGTAACTCCCTGAAATGACCCAATCCTGTTACCACAGACTCAAAGTGTCCGCTTCCCTGCATGCATCCAAGTCAAATAA
GATATGAACAGTAGATTGCAGCAAAGAAAGTAAAGTTTTATTTAAGGAATTGGCACCAAGCCCAGAGACACTGGTGAACT
AGTGCTCTCAAAAACCTGGCTCCCCGATGGCCTCTAGTGGCTAGGTTACTATAATCATGGTTACTACGGGTATTAGGATC
ATGGGCTCTACCAGTTAGTCAGGACTAAGGCAAAGGGGAATTTATTCAGACATCAGGTCCTGATGTCAATCATGGCATTG
TTCTGTTCAGTTTCCAGAGGATGAGATCCATCGGTCCATTTCATGAGTCCAGAGCTGAAACATAACTGAGGCCAAAGTGG
TTTCTTTATTTGACTAAAACTGTTAGGTAGCTAGTCAGACATGAATGACAGAGGAACAAGGGAATGGAGGCCCAGCCTAG
AGACTGCCCAAAATACACTTCATTGGTAGTTAAAGACTTCCTTCTACATCCGGGGAGACAAAGAACTGGAGAGCCATACG
TATAGTTGGTTTAATCCGGGCCACAGACACTTGTGCAGAACATATTACCCTAACCTGTCCACAACCTTTGCCTCATTATA
TCATTATACTACCATATTTATGCCAGGAAATTTATGAATCTAATTATAACAGACTGAATTCCGGGTAAGCACATGAGCTC
TAAAGCAGTTATATAGCAGTCAAGTGTCAAATCGAAATGACCTCATATGCCTAGTCACCTAGGAACACCCTTGTAACCAC
CCACCATGGCCCCAGTATAATATAAACTTTCCTACTTCTACGTTGTTATAGCTCTCTTGGCTGAAAAGTCGCCTCTACGT
CAGGGTGTACTCTAGCTCTTATTTCTTTTATCTTTTCTTTTCAACTCCCAAGTTCCACAGGGCTGCAGCCTTCCTTAGTT
TGGCCTGTCTCCTTCTAAAATATACCCTTAATAAATCTTTCTAAAATCTTGCTGATCTGTGATTCTTTGTTGTGTGGCAG
TGAGAAAGAACTGAGGAGAAATGCTAATTGCACTTCTGCGAATTCTACCCCCCTCCCCACCCCATGCCATTTGGGGCGAC
ACTGGAGTTCAAATATCCCCCAAATGGTAACAAAAACTTCGTTCTAATTTGAAGATTAGTTATTGTATCTGGGTCATAGT
TGATAGCCCTGAAACTTTATTCTTAAGTGAGTTTGACTCTGACAAAAACCTAATATCCTTAGGGCTTAATGATTAAAAGG
AGAGGATATAAAGTATACCTACAGGAGTATTTGATGGAAAGAATGCAAGTGAATCATAGTTCCATCAAGCTAAACGAAGC
TAGCTTAAATGAAAGCAAAACGTCTGCTAAAGAAATGAAATTCGTGTGCCGTTACAATCCGTCTCCCTATATACTATCGT
TACCTAAACTCAAAAGAAAAGGCTGCAGGTGGGGGAG-AAGTTATAGGAGGTGACCAGGAAAAGCACAGTAAA-------
-------CTAAGATATGATTTTTACGTAGACTTAAGTTTTTGCCCTT-CCCATTGAT-AAGAGTTTCTAGAGATTTAGAG
TCCTCCTACTCCTCCTGCTATAGACAACAAGATACTCTTAC-AAATAGAGATTTCCCTTATAA------ATGTCTCTTAC
AAA-----------------------AGAGCTTCACCCGTGTCTCCTGTTTCTTAAAAATAACTAGCTCATAATAATCAA
TATGCCAAAGAAACATATTTT------TGGTGG------CATATTCTCCTCTCCTACA---CCATT---GAACCTGT-TA
TA-TTCCCAAATAAAAATTTAATTTGATTGTGTC----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------AATGGTTTA
>Canis_familiaris
AG-CAATCCCTCAGAAAAAAGGCAAGGCCTAAAAAAAATAACTTAATAT---CT----------------------GTC-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------AAATATGTTTA
TA-TTCCTAAATAATAATCAAAATTGATTGTCAT----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------GTGGCTTA
>Felis_catus
AGTCAGTCTCTCA-GAAAAAGGCAAGGTCTAAAAAAAA-----TAGTAT---CT----------------------GTT-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------AAA-ATGTTTG
TA-TTCCCAAATAATAATC-----TGATTGTCAC----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------ATGATATCGTA
>Manis_pentadactyla
AGTCAGTCTCTGA-GGAAAAGGCAAGGGCTAAAATAAA--AC--AGTAT---CT----------------------ATC-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------AAACATGT-TC
TA-TTCCCAACTAGTAATCTAATTTGATTGTCAC----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------AGTGGTTTA
>Sus_scrofa
AGTCCATCTGTGAGGAAAAAGGCAGGGCCTAAAGAAA---------TAT---TT----------------------CTC-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------AAACCTGT-TA
TAATTCACAAATA-------------ATTGTCAC----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------ACTGGCTTA
>Bos_taurus
AGTC-GTCTCTAAGAAACAAGGCGAAGCCTAAAATAAA--ACTTAGTAT---CC----------------------GTC-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------AAACATGG-TA
TA-TTTCCA---AATAATCGAATCGAAGTGTCAC----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------ACTGGTTTA
>Condylura_cristata
AGCCAGTTTCTGA-GAAAAAGGCAAGGCCTAACATGCC------ATTAT---CT----------------------GTC-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------AAACGTGT-TA
TA-TTCCCAAATACTAATCTAATCTGATTGTCAN----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------NNNNNNNNN
>Solenodon_paradoxus
AATCTGTTTCTGA-GACAAAGGCAAGGACTAAAATAAA--ACTTCCTGT---CT----------------------GTC-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------AAACATAT-TA
TC-TTCCCAAATAATAATCTAATCTGACTGTCACTGAAGGGAAGTAGAATAGACTGCCCCAAAATATGACACTTTGGCAT
GTACATTGTTTTGAGTTGAAGGTCATCAAGACGCAGAACATTAACGAAAAGCTTACCTCTCCCTTAACTACCTGTAAGAA
TTTAGATGGGGTATCTGGCCCAGAAAGAACTATTACCAAAAATAACTTTTTATCTTAATGACCTATCTGTAGGGCAGGGC
GAATATCTAATTGTCAACATCTGCTCTTATTCAGTGAACTGCCTTCTTCCCCCATGCTGTCCCTGGCCCCTATCCTGCTT
GAACTAAGGCTTGAGATGACATATAAGCTTCAGAGGCCCACCTAGTCCTTGAGCCTCATGACTTTGAGCTCCAGTATATA
TGTAATTAAATTTGCTTTTCATGTGTTAATCGGTCTTATGACAATTTACTTACTACACTAGATGAAAAACTAGAAAGCAA
GAGAGAAATGTTTTCTTCACCTACATCATAATAGTTTA
>Homo_sapiens
AGTCAATCTCTGA-GAAAAAGGTAAAAATTAAAATGAA--GCTTCCTAT---CTCACGTGACAGATAGTATGATAATAG-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------AAACAAAA-TA
TT-CCTCCAAAC-ATAACCTAATTTGATTGTCAC----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------AATGGTTTA



Horse13_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------TGAATAGACATTTC
TCAAAAGAAGACATACAAATGGCCAACAGGTATATGAAAAGATGCTCAACATCACTAATCATCAGGGAAATGCAAATCAA
AACCACAATGAGATATCACCTCACACCTGTTAGAATGGCTATTATCAAAAAGACAGAAGATAACAAGTGTTGGCGAGGAT
GTGGAGAAAAGGGAACCCTTGTACACTGTTGGTGGGAATGTAAATTGGTACAGCCATTATGGAAAACAGTATGGAGGTTC
CTCAAAAAATTAAAAATAGAACTACCATATGATCCAGCAATCCCACTTCTGGGTATATATCCAAAGGAAATGAAATCAGT
ATCTCGAAGAGATATCTGCACTCCCATGTTCATTGCAGCATTATTCACAATAGCCAAGATATGGAAWCAACCTAAG-TGT
CCATCGACGGATGAATGGATAAAGAAAATGTGGTATATATAC----------------------------ACAATGGAAT
ATTATTCAGCCTTAAAAA--AGAAGGAAATCCTGCCATTTGTGACAACATGGATGAACCTGGAGGACATTATGCTAAGTG
AAATAAGCCAGGCACAGAAAGACAAATACTGCATGATCTCACTTATATGTGGAATC---------TAAAAA---------
--------------------AGTCAAACTCATAGAAGCAGAGAGTAGAATGGTGGTTGCCAGGGGCTG--------GGGG
GTGGGGGAAATGGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGT
ACAGCATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCACC
ACACACAAAAAA---------------------------------ATGGTAACTATGTGAGGTGATGGATATGTTAATTA
GCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAA------
---TTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA--------------------------------------
-------------------------------------------------
>Sus_scrofa
TATTTCCTATGA--------------------------------------------------------------------
------------------------------------------------------------------------------AG
AAGT---------GCTATTAAGTGACAACCCGCAGAAGTCTTTCAC---AAAACTGTCTT--------------------
---ATAGAAGATATACAAAAGGCCAACAGGTATATGAATAGATGCTCAATATCGTTAATTATTAGGGAAATGCAAATCAT
AATCCTAATGAGGTATCACTTCACACTTGTTAGAATGCTCACCAACAAAAAGAAAAGAGATAGCAAATACTGGCGAGGAT
GTGAAGAGA---GAACCCTGGTGCACTGTTGGTGGGACTATAAACTGGTACAGCCA-TATGGAAAACAGTATGGAGGATC
CTCAAAAAATTAAAAATTGAACTACCATATGATCCAGCAATTCTACTTCTGGGAATATATCCAAAGGAAATGAAAAC-CT
AACTCAAAAAGATATATTCACTTCCATGTTCACAGGAGCATTATTTATAACAGACAAGACATGGAAACAACCTAAGAAGT
CCATCAATGGAGGAATGGATAAAGAAGT-----TATATATAC---------------------TTCATATACAATGGAAT
ATTATTTAGTCATAAAAAA-ACAAGGAAATCCTGCCATTTCTGACAACATGGATGGACACGTAGGACAGTACATGAAGTA
AAATAAATCAGGAAGA-AAAGACAAATACTGTATGATCTCGCCTATATGTGGGATCACACACACACAAAAATCCCCAATG
CCCCCCCCGTTTAAACTCTACTCCAAACCCCTAGAAAAA-AGATCAGATTGGCAGTTACCAGAGGCAAGGGGTTGAGGGG
GAGAGGGAACTGGCAGAA-GATTGTCAAAAGGTACAAACATTCAGTTA--TAAGATAAATCAGTAC-AGAGATGTAATGT
AGGACA---TGACTACAGCTAACCCTGCTATATGATATATAGCAAAATTGTTAATAAAGTAAATCTTAAGAGTTCTCATC
ACATGGATAATTTTTTCCTTTTC------------------TTTTATTCTATCTATATAAAATTA-----ATGCTAGCTA
AGC-TATTGCAGTAATCTTTTCGCAATATAT--GTACATCAGACCACTGTGCTGTACACCTTAAACTTACACACGTATGT
CATGTCATGTACATCAATTATAGCTCAACAAAACTGGGAA------AAAACTGTCTTCTA---GGTTTAAAGAC-ACAGT
CTATGCACTTAATGCTAATTCTTAAAA---------CTCTT-TACTGAT
>Bos_taurus
TACTTGCTATGA--------------------------------------------------------------------
------------------------------------------------------------------------------AG
AAGT---------GCTATTATGGCACAATCCACAGAAAGTTTTCAT---AAAATTGTCCTCTA-----------CATTTC
TCCAAAGAACACATACAAAAGGCTAACAGATACATGAATAGGTGCTCAACATCATTAGTCATTAGGGAAATGCAAATCAC
AACCGCAATGAGGTATCACCTCATACCTTTCAGAATGGCCATCAACGAAAAGACAACAGGTAAAAAATGCTGGTGAGGAT
GTGATGAGA---GAACCCT-GTGCACTGCTGGTGGGACTGTAAACTGGTATAGCCA-TATGGAAAACAGTATGGAGGATC
CTCAAAAAATTAAAA-TTGAACTACCATATGATCCAGCAATTCTACTTCTGGGAACGTATCCAAAGGAAATGAAAACACT
AACTCAAAAAGATATATGCATTCCCATGTTCATAGCAGCATTATTTACAATAGGCAAGACATGGAAACAATCTG---TGT
TCATCAATGGAGAAACGGATAAAGAAGTTTTTATATACATACATATCCATATGTATATATGGATACACATACAATGGAAT
ATTATTCAGCCATTAAAAACACAAGAAAACACT---ATTTGTGATAACATGGATGGACCTTGAGGGCAGTATGCTAAGTG
AAATAAGTCAGACAGA----GGCAAA-ATTCTATTATCTCAGTTATATGTGGAAAT---------AAAAAA-----AAAA
CCCAAACAATAAAAACCCCACACCAAATTAATACAAAA--AGATAAAATTTATAGCTACTACAGGTAGGGGTTT--GGGA
GAGGGGGAACTGGAGAAA-GATGTTCAAAACGTACAAACTTTCAGTCA--CAAGATAAATTAGTACTAGAGTTGTAATGT
AGAACA---TGACTACTGCTAATGCTATTGTATGATATATAGCAAAGTTGTTAAGAAAGTAAAACA-AAGAGTTCTCATC
ACAAGGATAATTTTTGCCCTCTTTTCTTTC-----------TTTTATTTTTATTATGTGAGAAGATGA--ATGTTCGCTG
AACATATTGTAGTGATCATTTCACAATAAAT--GTAAGTCAAACCATTATGCTATAAACCTTAAATTTATATG-------
---GTGATGTCTGTCAATGATATTTCAATAAAAGTGAGGAA-----AAAACTGTCTTTTA---GGTCTAACGAC-ACAGC
CTATGCACTTAAAGCTAACTTCTCAAAAAC--------------CTTGT
>Equus_caballus
TATTTGCTATGA--------------------------------------------------------------------
------------------------------------------------------------------------------AG
AAGT---------GCTATAATGGCAGGACCCTCAGAGTTCTTTCAC---AAAACTGTCTTCTA-----------CATTTC
TCCAAAGAAGATATATGAAAGGCCAACAGGTACATGG--AGATACTCAACATCTCTAGTCATTAGGGAAATGCAAATTAA
AACCACAATAAGATATCACCTCATGCCTGTTAGAAAGACCATCAACAAAAAGACAAGAGATAA-GAATGCTGGTGAGGAT
GTGGAGAAAAAGGAACATTTGTGCACTGTTGGTGGGATTGTAAACTGGTACAGCCACTATGGAAAACAGTATGAAGGATC
CTCAAAAAATTAAAAATTGAACTACCAAATGATCCAGAAATTCCACTTCTGGA---ATATCCAAAGGAAATGAAAACATC
AACTCGAAAAGATATCTGTATCTCCATGTTCACTGCAGCATTGTTTACAATAGCCAAGACATGGAAAGAACCTAAA-TGT
TCCTTGATGGATGAATGGATAAAGAAGATGTGGTCTATATAT----------------------------ACAATAGAAT
ATTATTCAGCCATAAAAA--ACAAAGAAATCCTGCCATTTGCAACAACATGGATGATCCTTGAGGGTATTGGGCTAAGTG
AAAAAAGTCAGATAGAGAAAGACAAATACTGTATGATCTCACTTAGGCACGAAACC---------TAAAAA------AGA
AATAATTAAGAAAAAC------CCAAACTCAGAGAAAAAGAGATCAGAT------------GGGAGTGGGGCA---CGGG
GAGGGGGAACTGGAGACA-GGTAGTCAAAAGGCACAAACTTCTAGTTA--CAAGATAACTAAGTACTAGGGATATAATGT
ACAGCATGATGACTATAGTTAACACTGCTGTATGATATACATGAAAGCTGTTAAGAGAGTAAACTCTAAGAGTTCTTATC
ACAAAGAAAAAAATTTCCTTTCCTTTTTTTGGGCTTTCTATTTTTATTGTATTTATATGAAACGAGGG--ATGCTAACTA
AACTTACTG--GTAATCATTTTACGATGTAT--CTAAGTCAA---------------ACCTTAAACCT-TACA-------
---GTGATGTATGTCAATTACATCTCCATAAAAATAGGAGAAA---AAAACTGTCTTCTA---GGTCTAAAGAT--CAGT
CTGTGCACTTAATATTAAGTTCTAAAAAATCCCAAGCCCTT-TACTTGT
>Ceratotherium_simum
TATTTTCTATGA--------------------------------------------------------------------
------------------------------------------------------------------------------AG
AAGT---------GCTATAATGGCACAACCCACAGAGGTCTTTCAC---AAAACTGTCTTCTA-----------CATTTC
TCCAAAGAAGATACACAAAAGGCCAACAGGTACATGGAAAGATGCTTAACATCACCAGTCATTAGAGAAATGCAAATCAA
AACCACAATAAGACATCAGCTCATGCTTGTTAGAAAGGCCATCAACCAAAAGACAAGAGAAAACAAATGCTGGTGAGGAC
ATGGAGAAAAG-------TTGTGCACTGTTGGTGGGATTGTAAACTGGTACAGCCACTATGGAAAACACTATGGAGGATC
CTCAAAAAATTAAAG-------TACCATATGATCCAGCAATTTCACTTCTGGAAATATATCCAAAGGAAATGAACACAGC
AACTTGAAAAGATATCTGCGACCCCATGTTCATTGCAACATTGTTTACAATAGCCAAGACATGGAAACAACCTAAG-TGT
CCATCGATGGATGAAAGGATAAAGATGATGTGGTCCATATAT----------------------------ACAACAGAAT
ATTATTCAGCCATAAAAAA-ATGAGGAAACTCTGTCATTTGCAACAACATGGATGGCCCAAGGGGGCACTATGCTAAGTG
AAATAAGTCAGATAGAGAAAGACAAACACTATCTGATTTC----ATACGTGAAAAC---------TAAAAA---------
-------AAAAAAACCAACAAACCAACCTGATAGAAAATGAGATTAGAT--------AGTAGGGCGTG--------AGGG
GAGGGGGAATTGGAGAAA-GGTAGTCAAAAGGTACAAGCTTCCACTTA--CAAGATACATAAGTACTAGGGATGTAATGT
GCAACGCTGTGACTGTAGTTAACACTGCTGTACGATATTTAAGAAAGTTGTTAAGAGAGTAAATCCTAAGAGTTCTCATC
ACAAGGACAAAATTTT--TTTCTTTTTTTCTTTCTTTCTTTTTTTATTGTATCTATATTAGATGATGG--ATGCTAGCTA
AACTTATTGTGGTCATCATTTTACGAAATAT--CTAAGTCAAACCATTATGCTGTACACCTTAAACTTATACA-------
---GTGATGTATGTCAATTACATCTCCATAAAACTGAGAGAAA---AAAACTGTCTTCTA---GGCCTAAAAACCACAGT
CTGTGCACTTAATATTAATTTCTTAAAAATCCCAACCTCTT-TACTTGT
>Canis_familiaris
TACTTACTAT----------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------GCTCTAATGGCATGACCCATAAATGTCTTTCAC----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------AAAACTGTCTTTTA---GGTCTAAAGAC--CAGT
ATGTGCACTGAGTGATAATTTCTCCAAGATCTGAAGCCCTT-TAGTTGT
>Felis_catus
TATTTGCTGTGA--------------------------------------------------------------------
------------------------------------------------------------------------------AG
AAGT---------GCTACAATGG-ACCATGCATAGAGGTCTTTCAC----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------AAAACTGTCTTCTT---GGTCTAAAGACCACAGT
CTGTGTACTTAGTGTTAATTTTGCAAAGATCCCGAGCCCTT-TATATGT
>Manis_pentadactyla
TATTTGCCAAGA--------------------------------------------------------------------
------------------------------------------------------------------------------AG
AAGT---------TCTTTACATGCACAACC---AGAGATCTTTCTC----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------AAAATTGTCTTCCA---GGTCAA------AAAGA
CCTAGAAATCAATGTGAATTTCTCAAATATCCAAAGCCCTT-TGTTTGT
>Myotis_myotis
TACTTGCTATGA--------------------------------------------------------------------
------------------------------------------------------------------------------AC
T------------GTTATAATGACACAATCCACAGAGGTCTTTCAC----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------AAAACCATCCTCTA---GGTCTT------ATGCT
CAATGCACTCAATGCTCATTTCTCAAAAATCCCAAGCTCTT-TACTTGT
>Rousettus_aegyptiacus
TATTTGCTCTGA--------------------------------------------------------------------
------------------------------------------------------------------------------AG
A-----------------------ACAATCCACAGAGGTCTTTCAC----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------AAAATTGTCTTTTA---AGTCTAAAGACCACAGT
CTGTGCACTTAATGTTCATTTATCAAAAGTCCCAAGC-CTT-TACTTGT
>Crocidura_indochinensis
TAATTGGTTCAAA-------------------------------------------------------------------
------------------------------------------------------------------------------AG
AAATAAAAGGGG-GCTCAAATA-TACAAC--------------CAC----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------AAAATT---TATTA---GATCGAAAGACCATAAT
AT---------ATATTGATTTCTCAAAAGTCCCAATACCTTGTATTTCT
>Sorex_araneus
TAATAGGTCCAGAGAGACACCTCAAAAGGCTGAATGGCCTCAATTGACTCTAGTACCTCAGAGCACTGATAGGAATGACC
CCTAAGCATAGAATAGAGAGTAGCCCTTGAGTTCTGCTGGGTGTGTTTCCCAAATCAAAAGCAAAAACTACGACCAATAG
AAACAAGAAGGAAGCTGAAACAGCACAACCCATAAAAATCTTTCAC----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------AAAC---TATATTA---GGTCTAAAGACCATAGT
CT---------ATATTCATTTCTCAAAAATCCTGATACCTT------GT
>Homo_sapiens
TATTTGCTATGA--------------------------------------------------------------------
------------------------------------------------------------------------------AG
AAGT---------ACTATAATGGCACAATCCACAGAAGTCTTTCAC----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------AAAATTGTCTTCTG---GGTCTAAAAGTCA----
CCCAGATCTTGATGCTACCTTCTTAAAATATCCACACCCTT-TACTCAT



Horse13_LTR

>MER34F_EC
-----------------------------------------------------------------------TGAAGGGGA
GCAGAATATGCCA-CCCCAAAATATGCCACTTTGGCATATTGATTATTTTGAATTAAAGTTACTTAAGAAACAGCTGGTG
CAAGAAGGACACTCTGACCCTCCTTTGTCCCCCTGAAAGCAGGAAATAAATCTCCCATGTGAAAGGTACCCTCCCTGTAC
CAGGAGGGTAGAAGGCATCCTTATCACCAGAGATAGGGAATTTAGGGCCGAGAAGGCTGTATAAACAAACCTTGTTACTT
CTTCACTAATTTACTACCCCAAGCCCAAACCCCTTTGTCTTGTCAATTCTTCACAAATTTATTGTTTC------------
----------------------------TTTGTCTAAAAGGTAT------------------------------------
-----AAAAGCTGCCTGCTTTGG-----------TCACTTCTTTGAGTCTCATATTTTTATGGGGCTCCTGTACATACAA
AATTAAATTTGTTTTTCTCCTGTTAATCTGTCTTATGTC-AATTTAATTATTAGACCAGCCAAAGAACCTAGAAGGGAAG
AAGGGAAAAGTTTTCCTCCCCTACA-------------------------------------------------------
-----
>Canis_familiaris
TTGT--GGGTCCTGAAATGCTTCTGGAAT-ATCTGTAAAACACAT---TTTTTGGGGAACA---ATGC---TGAAGGGGA
GAAAAATATACCA--CCCAAAATATGCTGCTTTGGGATAATGATTATTTTGAA-TAAAATTTGTTGAGAAACAGCTGGTG
TAAGAAGGACACTCTGATCCTCCTTTGTCTTCCTGAAAGCAGGAAATAAATCTCCCATGTG-AAGGTATCTTCCCTGTAG
CAGGAGGGCGGAAGGCATTGTAATCACCAGAGACTGGGAAGTTAGGGCCAAGGAGGGTGTATAAACAAAT----------
--------ATTTACTACTCCAAGCCCAAACTTCTTTGACTTGTCAATTCTTCAAAAATTTGCTATTTC------------
----------------------------TTAGTCTAA-------------------------------------------
------------------TTTGG-----------TCAC---TTTGAGTTCCATATTTTCAC-GGGCAACTGTACATATGA
AATTAAATT-GTTTTTCTCCTCTTAATCTGTCTTATGTC-AAATTAACTATAAGACCAGCCAAAGAACCTAGAAGAAAAG
AAGGGAAAAATTTTCTACCCCTACA---TTTT---ATTGGTATATTATTGTTTACTCAATTAATGAGTTTAGTTTCAGGA
GCTTC
>Felis_catus
TTGT--GGGTACTGACATACTTTGGGGAT-ATCTGTAAAACACAT-AGTTTTTT-GGAACA---ATAC---TCAAAGGGA
A-AAAATATGGCA--CCCAAAATATGCTACTTTGGCATAATGATTACTTTGAA-AGAAGTTAGTTAGGAAACAGCCAGTA
CAAGAAAGTCACTCTGATCCTCCTCTGTCTCCCTGAAAGCAGGAAATAAATCTCCCATGTG--AGGGACCCTCCCTGCAC
CAACAGGGTAGAAGGCATTGTTATCACCAGAG------------------AGAGGACTGTGTAAACAAAT----------
--------ATTTACTACCCCAAGCCCAAACTTCTTTGACTTGTCAATTCTTCAAAAATTTATTATTTCTGCGGCACCTGG
CTGGCTCAGTCAGTACAGCACACAACTTTTAATCTCAGGGTTATGAGTTCAAGTCCCATGTTGGGTGTGGGGCCTACAAA
AAAAAAAATAGTTCTCAGTCTGGAAGAAATCTCATCACGTTTTTGAGTCTCATATCTTCAT-GGGCTCCCGTATGTATGA
AATTGAATC--TTTCTCTCCTGTTAATCTATCTTATGTCAAATTTAACGATTAGACCAGCCAAAGAACCTAGAGTGGAAG
AAGGAAAAAGTTTTCCACCCCTACA---TTTT---ATTGGTATATTATTATTTACTCAGTTAATGGGTTTAGTTTTAGGA
ACTTC
>Manis_pentadactyla
CTTT--GGGTACTGAAATA-CTTTGGAAT-ATCTGTAGTACAC---AGTTTTTC-AGAACA---GTTC---TGAAGGGGA
GCACAACATGTCACCCCCAAGATATGCTACTCTGGCATATGGATTATTTTGAATTAAAGTTACTTTTGAAATAGCAGGTG
CAAAAGGGACACTCTGACCCTCCTTTGTCTCCCTGAAATCAGGAAATATTTTTTCTATGTG-AAGGTACTCTTCCTGAAT
TAAGAGGGTAGAAGGCACCCTTGACACTAGAGATAGGAAATTTAGGGCAGAGAAGGCTCTATAAACAAACTTTGTTACTT
TCTCACCAATTTACTACATCCAGCCCAAACTTC---ATCTTGTCAATTCTTCACAAATGTATTGTTT-------------
-------------------------------GTCTAAAACCTAT------------------------------------
-----AAAAGCTGCCTGCACTGG-----------TTACTTTTTTGAGATGCATGTTTTTAT-AGTCTCCCATATATAGGA
AATTAAATTTGTTTTTCTCCTGTTAA--TGTTTTATGTC-AATTTAATTATTAGACCAGACAAAGAACTTACAAGAAGGG
AAGGGAAAAGTTATCCACCCCTACA---GTTT---ATTGATATGTTATTGTTTATTCCGTTTCTGGGTTTAACTTTAGGA
ACTTA
>Equus_caballus
CTTT--GGGTACTGGAATATTTTTGGAAT-ATCTGTAAAACACGT-AATTTTTC-AGAACA---GTTC---TGAAAGGGA
GCAGAATATGCCA-CCCCAAAATACGCCTCTTTGGCATATTGATTATTCTGAATTAAAGTTACTTAGGAAACAGCCAATG
CAAGAAGGACACTCTGG-CCTCCTTTGTCGCCCTGAAAACAGGAAATAAATCTCCC-CGTGAAAGCTACCCTCCCTGTAC
CAGGAGGGTAT-AGGTA-TCCTATCAC-AGAGAGAGGGAATTTAGGGCAGAGAAGGCTGTGTAAACAAATCTTGTTACTT
CCTCACTAATTTATTACCCCAAGCTCAAACTTCTTTGTTTTGTCAATTCTTCACAAATGTATTGTTTC------------
----------------------------TTTGTTTTAAAGGCAT------------------------------------
-----AAAAGCTGCTTGATTTGG-----------TCATTTCTTTGAGTTCCATATTTTTAT-CTGCTCCTGTACATACAA
AATTAAATTTGTTTTTCTCCTTTCATTATGTTTTATGTC-AGTTTTATTATTAGACCAGCCAAAGAACCTAGAAGGGAAG
AAGGGAAAAGTGTCCTGCCCCTACA---GTTT---ATTGGTATATTATTCTTTACTTAATTTATGGGTTTAGTTCCAGGA
ACTTA
>Ceratotherium_simum
CTTT--GGGTACTGAAATATTTTTGGAAT-ATCTGTAAAACACAT-AGTTTTTC-AGAATA---GTTC---TGAAAGGGA
GCAGATTATGCCG-CCCCAAAATATGCTACTTTGGCATATTGACTATTTTGAATTAAAGTTACTTAAGAAACAGCCAATG
CAAGAAGGACAC----ACCCTTCTTTGTCCCCCTGAAAGCAGGAAATAAATCTCCC-TGTGAAAGGAATCCTCCCTGTAC
CTGGAGGGTAGAAGGCA-CCCTATCACTAGAGATAGGGAATTTAGGGCAGAGAAGGCTGTATAAACAAACCTTGTTACTT
CCTCACTAATTTACTACTCCAAGCTCCAACTTCTTTGTCTTGTCAATTCTTCATAAATTCATTGTTTC------------
----------------------------TTTGTCTAAAAGGTAT------------------------------------
-----AAGAGCTGCTTGCTTTGG-----------TCATTTCTCTGAGTCTCATATTTTTAT-GGGCTCCCATACATACAA
AATTAAATTTGTTTTTCTCCTGCTGAGCTGTCTTATGTC-AATTTAATTATCAGACCAGCCAAAGAACCTAGAGGGGAAG
AAGGGAAAAGTTTTCTGCCCCTACA---GTTT---ATTGGTATATTATTATTAACTCAATTTGTAAGTTTAGTTCCAGGA
ACTTA
>Sus_scrofa
ATTT--GGGTACTGAAAA--TTTTGGGAT-ATCTGTAAAACATAC-AGTTTTCC-AGGACA-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------GTTC---ATTACTCTATTATTCTTTACTCAATTTATAGGTTTAGTTCTGAGA
ACTTA
>Bos_taurus
CCTT--AGGCACTAAAAT--TTTAGGGAT-ATTTGTAAAACACATGAGTATTTT-AGAAC--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------ATTC---ATTGCTATATGA----TTACTTAATTTATGAATTTAGTTCTAGGA
ACTTA
>Myotis_myotis
CTTT--TGGAACTGAAGTACTTTTGG---------------ACAT-AGTTTTTC-AGAAAA-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------GCTC---ATTCTTATATTACTATTTACTCAATTTATGGATTTAGTTCCAGGA
ACTCA
>Rousettus_aegyptiacus
CTTTGGGGGGACAGAAATATTTTTGTAAT-CTCTGTAAAACACAT-AGTTTCTC-AGAAAA-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------ACTC---ATTGCTACAATATTATCTACTCACTTTATTGGTTTAGTTCCAGGA
TGTTA
>Condylura_cristata
CATT--GGGGACTCAAATGTTACTGGAAT-TTCTGTAAAACACAT-CATTTTTT-GGAACA-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------GTTC---A-TAGTACATTATTATTTACTTAATTTATAGGTTTAACTACAGGA
ACTTC
>Sorex_araneus
TCC-------------ATTTTTTAAAAATAATCTGTAAAACACAT-AGTTTTT--AGAATA-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------GTTC---ATTAACATATTATTATTTACTTAATTTTTGAGATTTGTTTTGGGA
ATTTG
>Homo_sapiens
CTTTGGGATAAGTGAAATATTTTTGGAAT-ATCTCTAAAACACCT-AGCTTTTC-AGAATA-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------GTTC---ACTGATAAATAATTATTTACTCAATTTACATGTTTACTTCCAGCA
ACTTA



Horse14_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
------------------------------ACACACAAAAAAATGGTAACTATGTGAGGTGATGGATATGTTAATTAGCT
TGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTT
GTCAATTATACCTCAATAAAGCTGGAAAAA--------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------
>Sus_scrofa
TGTGGGCTAAAGA-----------CAGTCACCAGCAAGTATGTGGCTTTGAGTATGAAGCCATGGCTATAAAA-GAGTGT
GA--------------GAAGAGAGTTC---------------------CCAACAAGTGCTGACGG--ATGTTAACTAGAC
TTAGCGCCGTGATCCTTTCACAATGTATACAAATATCATATCATAACATTACATGCCTGAAACTAATATAA-TGTTATGT
GTCAATTATATTTCAAT-TAAAAAAAAAAGAGTGAATGATTCAAGGCATA-CATC--AATGCAGACCAATGAGAGCAAGC
AGAATTTTTCTGTGGACCTTTGGGAAAGTTTGAACTTGGTAAAGAAAAAGAAAAAAAATAGAAAGAGGAGTTCCCGTCGT
GGCGCAGTGGTTAACGAATCCGACTAGGAACCATGAGGTTGCGGGTTTGGTCCCTACCCTTGCTCAGTGGGTTAACGATC
CAGCGTTGCCGAGAACTGTGGTGTAGGTTGCAGACGCGGCTCGGATCCCGTGTTGCTGTGGCTCTGGCATAGGCCAGTGT
CTACAGCTCCGATTGGACCCCTAGCCTGGGAACCTCCATATGCCGTGGGAACGGCCCAAAGAAATAGCAAAAAGACAAAA
AAAAAAAAAAAAAAAAGAAAGAAA---ACATGAAGAGAG---TTC---AGAACAGAGGCAAACACTC-CAAGAACCGGCT
GGATAATGGCACAGAAAGAAGCA
>Bos_taurus
TGTGGACTAAAGACATACATTTGACAGTAACCAGTGCATACAGGTTATT-----TGAAGCTCTGGCTATAAAA-GAATGT
GAAAA-TAC---AAGAGAAGAGAGTTC---------------------TCAACAAGAGATGGTGG--GTGTTAACTAGAC
ATACTGTGGAGATCATTCCACGGTGTACACAAATATTGAATAATTACATTG-ATACCTGAAACTAATATAA-TATCATAT
GTCAATTACACCTCAATTTTTAAACAAAAAAGTGAATGAGTCAAGGCATATTATCTTAATTCAGACCAATGAGAAGGCAC
AGAATTTTTCTGTTAACTTCTGGGAAAGTTTGATCTTGCTTAAAAAAAAA------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------AAGAGAAGAAGGTGGTTC---AGATCAGAG----ACACTCTTAACAACTGGCT
GGGCAGAGGCAGAGGAAGAAGCA
>Equus_caballus
TGTAGGCTAAAGACATACATTCAACAGTGCCCAGCATGTAGAGGTTATT-----GGAAGCCATGGCTATAGAA-GAATGT
GAGGA-CAC---AAGAGAAGAGGGTTC----------------TCTTCTCAAGAAGAGTTGACGA--ATGTTAACT-GAA
TTATTGTGGTGATCATTTCACAACGTGTACAAATGTCAAATCGCTATGCTGCACATCTGAAACTAACATA--TGTTATAT
GTCAACTATACCTCAATTT---AAAAAAATAGTGAATGATTCAAGACATA-TATCTTAATTCAGACCAATGAGAGCAAGC
AGAATTTTTCTGTGCACTTCTGGGAAAGTTTGACTATGCCAAAAAAAAA-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------AAGAGAA--------TTC---AGATCAGAGATAAGCACTC-CAACGACTGATT
GGATAGAAGCAGAGGAATAAGCA
>Ceratotherium_simum
TGTGGGCTAAAAACATACACTCAACAGTCACCAGTATGTACAGGTTATT-----GGAAGCCCCGGTTACAGAA-GAATGT
GAGGATTAC---AAGAGAAGAGGGTCT----------------TCTTCTCAACAAGAGTTGACAA--GTGTTAAC-AGAC
TTATTGTGGTGATCATTTTGCAATGTATACAAATATCAAATCATTACGTTGTATACCAGAAATTAATATAA------TAT
GTCAATTATACCTCAATTTAAAAAAAAAAGGGTGAATGATTCAAGGCATA-TATCTTAATTCAGACCAATGAGAGCAAGC
AGAATTTTCCTGTCCACTTCTGGGCAAGTTTAAGCTTGCCAAAAAAAG--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------AAGAGAA--------TTC---AGATCAGAGATAAACACTC-CAACAACTGATT
GGATAGAGGCAGAGGAACAAGCA
>Canis_familiaris
TGGAGGCTACAGAC--ACACTTGACTGTCACCAGCATATACAGGTCATG-----GGAAGCCATGGCTATAAAA-GAATGT
GAGGA-TAT-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------AAGAGAAGAGGG---TTC---AGATCAGAGACAAACACTC-TAGCAACTGGTT
TTACAGAGGTAGAGGAACAAGCA
>Felis_catus
TGTAGGCTAAAGACATACACTCGACAGTCACCAGCATATACAGGTGATG-----GGAAGCCGTGGCTATAAAA-GAATGT
GAGGC-TAC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------AAGAGAAGAGGG---TTC---AGCTCAGAGACAAACACTC-TAACAACTGGTT
GTATAGAGGCAGAGGGACAAGCA
>Manis_javanica
TGTAG----------------------TCACCGGCACATATAGGTTATT-----GGAAGCCATGGCTAAATAAAAGATGT
GAGGA-TGC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------AAGAGGAGGAGG---TTC---GGACCAGAG----GCACTC-TAACAGCTGG-T
GCGCAGAGGCAGAGGAACAAGAG
>Myotis_myotis
GGTAGACTAAAGACAAACATGAGACAGTAACCAGCACATACAGGTT-TT-----GGAAGCCATGGCTATAAAA-TAATGT
GAGGA-TAC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------AAAA-ATAAGGG---TTC---AGATCAGAGACAAATACTCTTAACACCTGGTT
AGATAGAGACAGAGGAACAAGCA
>Rousettus_aegyptiacus
TGTAGGATAAAGATAAACATTTGACAGTCACCAGCATATACAAGTTATT-----GAAAGCCATGGCGATAAAA-GAATGT
GAGGA-TAC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------AGAATATGAGAG---TTC---AGATCAGAGA-AAATATTTTT---AATTGGTG
CAATAGAAACAGAGGAAGAAGCT
>Condylura_cristata
AGTAGGCTAAAGGCA--CATTTG----------------ATAAGTAACT-----GGAAAGCATGCC--------AAATGT
GAGGA-GAC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------AAGAGAAGAG-----TTC---AGCACAGAAGCAAACGCTCTC-GCAAGTGGCT
GGA-----------GAACAAGCA
>Uropsilus_gracilis
TGTAGGCTAACGACATACATTTG----------------ATAAGTTATT-----GGAAGCCATGGCTGTAAAATAAATGT
GATGC-CAC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------AAGATAAAAGAG----TC---AGTGCAGACACATACACTCTC-AAAAGTGGTT
GGGCAGAAGCAGAAGAACAAGCA
>Homo_sapiens
TATGAACTAGAGAAATCCCTATGATAGTCACCAGCATATACAAGTTATT-----TGAAGCCATAGCTATAGAA-GGACAT
GAGGG-TAC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------AAGAGAACTGAG---TTC---AGATGAGAGATAAA------------------
--------------GAGTGAGAA



Horse14_LTR

>LTR21B1_EC
------------------------------------------------------------------TGGT------ACC-
-CAATTCCAATGTGTG--TGTGGAG--TTTTTCCCCACACCACCAAGCAATTCTCCGACACCAG-CTGGGTGTCCTACAA
TTCAACTCAATTCTGACACTATCTACCTGGAG----ATAGCATCAGATCCCACAGGTTAAGGGCTCAGTCCTACAAGA--
--CCTGTCCCCACCCCCCACTTCAGACGCCAATCGCAAGTCCAGGTTGTCACCTGTGCTTCTGACCGACTGGCTATAGAT
CGGAGGTTCCAACGACCCCCTCCTTGGGTTCGATTAATTTGCTAGAGCGGCTC----ACAGAACTCAGAGAAACATTTTA
CTTACTAGATTACCGGTTTATTATAAAAGGATATAACTCAGGAACAGCCAGATGGAAGAGATGCATAGGGCAAGGTATGT
GGGAAGGGGCGCAGAGCTTCCATGCCCTCTCCGGGCGCGCCACTCTCCCCGAATCTCCACGTGTTCACCAACCCGGAAGC
TCTCCGAACCCCGTCCTTTTGGGTTTTTATGGAGGCTTCATTACATAGGCATGATTGATTAAATCATTGGCCATTGGTGA
TTGATCTCAACCTCCAGCCCCTCTCCCCTCCCCGGAGGTCGGGGTGGG---ACTGAAAGTTCCAACCCTCTAATCACATG
GTTGGTTCCCCTGGCAACCAGCCCCCATCCTTAGGTGCTTTCCAAAAGTCACCTCATTAACATAACAAAAGACACCTTTA
TCGCTCTCATCACTTAGGAAATTCCAAGGGTTTTAGGAGC--------TCTGTGCCAGAAACGGAGC-AAAGACCAAATA
TATATTTCTTATTATAAATCACAATATCACA-------------------------------------------------
--------------
>Equus_caballus
ATGTGGATTCCAGAACAGGTGGAGGTGGACC-TGAAGATGGACAGGAATTA---GATGTTA---AACGGTTCTAGTACCT
AATATTCCAGTGTGTG--TGTGCAGTG-GTTTCC--ACACTGCCAGGCATTTCTCAGACACCAACCTGGATGTCCTACAA
TTCACTTCCATTCTGACACT-TCTACCTAGA----GATAGCATCAGATTCCACAGGTTACAGACTCAGTCCCACAAGACT
GACCTCCCCCCA------CCTTCAGACGCCAATCGCAAGTCGGGGTTGTTACCTGTGCTTCTGACAGACATGCTAAAGAT
GGGAGA----AACAACTCACTTTGGGGATTCTGTTAATTTGCTTGAGCAAATCTAGAACAGAACTCAGAGAAACATTTTA
CTTACTAGATCACTGGTTTATTATCAAAGGATCTAACTCAAGAGAAGCCAGATGGAAGAGCTGCAGAGGGCAGGGTGTA-
CGGAAAGGGCGAGGAGCTTCCAGG--CCCTCTGAGCTCGCCAGTCTTA--AAATCTCAGTGTGTTCACCAACCGGGAAGC
TCTCCAAACTCCATCCTTTTGGGTTTTTACCAAGGCTTCATTACAGGA---------------------------TGTGG
TTGAACTCAATCTCCATCCCC-CATGGGTCCCCAG-GGTCA----GGGTGGGACTGAAGTTCCAACCCTCTAATCATACA
GTTGGTTCTCCTGGCAGCCAGTCCTC--CTTTAGGGACATTCCAAAAGTTGCCTCATTAACGTAACAAAAGACTCTTTGA
TTGCTCTCATCTCTTAGGAAATTCCAAGGGTTTTAGGAGCCCTGTGCTCCTGTGCTAGAAACGGGGCTGAAGACCAAATA
TATATTTCTTATGATAAATCACAATATCACA---GATGTGA---AACAGGAATTGGACAGGAATGAGAACTATGTAAGTT
CCCTTTTCAGCAAT
>Tapirus_indicus
ATGTGGATTCCAGAACAGGTGGAGGTGGACC-CAGAGGTAGGCGGGAATTG---GATGTTG---CATGTTTCTACTATC-
--AGTTCCAGTGTGTG--TGTGCAGGG-GCTTCC--ACACCACCAAGCATTTCTCAGACACTAG-CTGGGTGTCCTACAA
TTCAACTCAATTCTGACACTAGATACCAGGA----GATAACATCAGATTCCACAGGTTAAGGGCTAAGTCCTACAAGACT
GACC-ACTCCCA------CCTTCAGATGCCCATTGCAAGTCCAGGTGGTTACCTATACTTCTGACAGACAGGCTATAGAT
GGGAGGTTCCAACAACTCCCTTTTGGGATTCTGTTAATTTGCTAGAGCAAATCTAGAACAGAACTCAGAGAAACATTTTA
CTCACTAGATC-CTGGTTTATTATGAAAGGATATAGCTCAGCAACAGGCAGATGGAAGAGATGCATAGGGCAAGGTAAG-
GCTAAAGGCCAAGAATCAGTCAGGGTCCAATCAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNN
>Myotis_myotis
CTGTGTATTCCAAAACAGGTAGGGGTGGACCCTAGAGGTAGACAGGAATTG---GATATGA---AATGGTTCTAGTATC-
--AATTCCAGTGTGTG--TGTGCAGGGTTTTTCC--ACACCACCACGCAATTCTTGGATACCAC-TTCTGTGTCCT--AG
TTCAAATCTATTCTGACACTATCTACCCAGA----GATAATGTCAGGTTTCACAGGTTAAGGGCTCAGTTCTACAAGACT
GC--TGTCCTAA----------------------------------AACCACCTGTGCTTCT----GAGAGGTTATAGAT
TGGGGGCTCCAAAGACTCCCTCCTTGGGTTTGATTAATTTGTTAGAGCATCTC----ACAGAACTCAGAGAAACATTTTA
CTTCTGAGATTGTTGGTTTATTATGAGAGGATA-----CAGGAACAGTTCAATGGA--AGATGCATTGGGCAAGGTACA-
GGGCAAGACCAAAGAGCTTCCATGCCCTCTGCAGCTGTGCCATTCTCCCTGAATCTCTATGTGTCCACCAACCTGGAAAC
TCTCTGAACTCAGTCCTTTAGGATTTTTATGGAGGCTCCATTACATAGGCACAATTGATGAGATCA--------------
TTCAACTCACTCTCCAGTCCC-TATCCCCTTTCTG-GCAAATTATTGTATCACTGCAAGGTTCCAACCTCAAATTACATG
GTTTGCCTCACTGGCAACCAG-CCCCATCCTTAAGTGCTTTCTAAAAACTACCTCATTAACATAACAAAAGACACCTTTG
TTGCCCTTTTCACTTAGGAAAATTCAAGAGTTTTAGGAGC--------TCTGTGCCAGAAAC-AAGATGAAAAAC-AATA
TATATTTCTTATTATAAAACATAATGTCATA---GATGTAG---AGCAGGAATTGGATAGGAATGAGAGTTACGTAATTT
CCCTTTTCAGCAAT
>Rousettus_aegyptiacus
CTGTGGATTCCAGAATAGGTGTAGGTGAA-------------TAGGAATTG---AATGTTA---AATGGTTCTAATATC-
--AATTCTAGTGTGTGTCTGAGCAGGG-TTTTTT--ACACTACCAACTGTTTCTTGGACACCAG-CTATGCTTCCTGCAA
TTCAACTCAATTTTAACACTATCTACCCAGAGATGGATAGTATCAGATTCTGCAGATTAAGGGTTCAGTCCTATGAGACT
GC----------------CCTTAAGACACAGTAGGAAATCCAAGTTAGTCACCTGTACTTCTAACCAACAGGCTATAGAT
TGAGAGTTCCAAAGATCCCCTCATTGGGTTTGATTAATTTGTTAGAGCATCTC----ACCGAATTCAGAGAAGCATTT--
--------ATTACTGGTTCATTATGAAAGGATA-----CAGAAACAGCTCGATGGA--AGATGCATAGGGCAAAGTACA-
GGGAAAGACC------------TGTACCCTCCAGGTATACCACTCTCCCCAAATTTCAG-GTGTTCACCAGCCTAAAAGT
TCTCTAAATCCTGTCCTTTATAACTTTTATGGAGGCTTCATCACATAGGCATGATTGGTTAAATCATTGGCCGTCGGTAG
TCGAACTCAATCGCTAGCCC----------------------------------------TTCTCACATCTCATTACATG
GTTGCCGCCATTGGCAATGAGCCCCCATTCTTAGATGTTTTCT--AAATCACCTCATTAACATAACAAAAGACACTTGCG
TTGCTCTT-TCACATAGGAAATTCCAAGGAGTTTAGGAGC--------TCTATGCCAGAAAC-AAAATGAAGACCAAATA
TATATTTCTTAATATAAATCATAATATCACA---GATGTGG---AGCAGGAATTAGAAAGGAATGAGAGTTAGGAAAAAT
CCCCTTTCAGCAAT
>Canis_familiaris
ATGCGGATTTCAGAAGAGGTAGACATAGA-------------CAGGAATTA---GATGTGG-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------AACAAGACTTAGTCAAGAATGGGAACTATGTAAGTT
TGCTCCTCAGCATT
>Felis_catus
ATGTGGATTTCAGAATAGGTAGACATAGA-------------CAGGAATTG---GATGTGG-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------AGCAAGTATTGGTCAAGAAGGGGAGCTATGTCAGTT
CCCTTCTTGGCAAC
>Manis_pentadactyla
ATGTGGATTCCAGAACAGATGGAGGTAGACC-TGAAGGTGGCTAGGAATTA---GATGTGA-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------AGCAGGAAACGGACAAGAATGGAAACCATCTAAGTT
CCCTTTTCAGCAGT
>Sus_scrofa
ATGTGGATCCTAGAACAGGTGGAGGTGGACC-TTGGGGTGGACAATATTTG---GATGTGA-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------AGCAGGCATTGGACAA-AGTAGAAACTATGTAAGTT
CCCTTTTCAGCAGT
>Bos_taurus
ATGTGGGTTCCAGGATAGGTGGAGGGGGATC-TGGGAGTAGAGAAGAAATG---GATATGG-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------AACAGGAATTGGGCAG-AATGGAA-TTATGTAAATT
TGCTTTCCAGCAGT
>Condylura_cristata
GTGTAGAGTTCAGTATAGGTAGATGTGAA---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------CAGAAACTGCATAGTAGTGGGAAGTAGGTAAGGT
CCTTTTTCAATATT
>Sorex_araneus
ATGTGGTCTCCGTAATAGGTGAAACAAGAG--TAAAAGTGAGCAGGAATTG---GCTGAGG-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------ATCAGAAATTGTGCAAAAATCGCAATACATTGAGTT
TCTTTTACGACCAA
>Homo_sapiens
ATATAGATTTTATGAGAGGTGGAGTTACACC-TGGAGGTGGACATGAATTG---TATGCTT-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------AAGAAGAACTAAGCAGGAATGAGAACTATGAAAGTT
TTCCTTTAAAC-TT



Horse15_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
-------TCACCACACACAAAAAAATGGTAACTATGTGAGGTGATGGAT--ATGTTAATTAGCTTGATTGTGGTAATCAT
TTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAA---ATATATACAATTTTTATTTGTCAATTATACCT
CAATAAAGCT--------GGAAAAA-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------
>SINEC_Fc2
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------GGGGCGCCTGGGTGGCTCAGTCGGTTAA
GCGTCCGAC-------TTCGGCTCAGGTCATGATCTCGCGGTTCGTGAGTTCGAGCCCCGCGTCGGGCTCTGTGCTGACA
GCTCAGAGCCTGGAGCCTGCTTCGGATTCTGTGTCTCCCTCTCTCTCTGCCCCTCCCCCGCTCACGCTCTGTCTCTCTCT
CTCTCAAAAATAAATAAACGTTAAAAAAAAAATTAAAAAAAAAA------------------------------------
--------------------------------------------------------
>Sus_scrofa
TCCTTTAAAGCTAAAATTAATAAT-ATAGATAATTGCATTTAGAGGTCTAAGAAAATTCTATGT-GAAA---AGA-TT--
-------------------------CTGTAACTAGGTATGGT----GAAGAAAGTTAAGCAGATCTATTGCCATGGTTAT
TTTTCATTACATACCAATATCAAATTATCGTGTTATATAGACAAAGT----AATATAG-TATTGCATGTCAATCATACAT
GAATAAAAAAATTTT----------------TTGA---AGACTGCCTAA-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----AATGAAATATATAAAAGTAATTTC-ATTTAGAACTGAGATGCCAGGTGATTT
>Bos_taurus
TCCTCAAGGGCGAAAATTAACAAT-GCAGATGATTGTATTGAGAGGACAGAGGTAATTTTATGT-GGAA---AGA-TTGC
CTGG-------------------TTCTGTAACTCCGTATGGTG--GGACAAATGTTAACTAGACTTACTGTCATGATCAT
TTTGCCATATATACAAGTATCAAATCATTATGTTGTACACCAGAAAG--------TAA-TATAATATGTCAATTATACCT
CAACTTACAAATTTT-------------------T---AGGTTGTCTAA-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----AATGAAATATACAAAAATAATCTC--TTT-GGAGTAAGA-CTCAGGTCATTT
>Equus_caballus
TCTTTAAGGGCTAAAATTAACAAT-ACAGAAAACTGCACTTAGAGGACAGAGAACATTCTACGT-AAAA---AGA-TTGC
CTGA-------------------TTCTCTAACTATGTATGGC----AATGGATGTTAGCTGGACTTAATGTGGTGATCAT
TTCGCAATATATACAAATATCAAATCATTATGTTGAACACCAGAAACAAGAAAT---A-TGTTGTATGTCAATTACACCC
CAATAAAACTTTT--------AAAAAAGCAAAAGA---AGATTGCCTGA-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----AATGAAATATACAAAAGTAATCTC-TTTTGGGAGTGAGATCCCAGGTGATTT
>Ceratotherium_simum
TCCTTAAGGGCTAAAATTAACAAT-ACAGAAAACTGCATTTAGAGGACAGAGAACATTCTATGT-AAAA---AGA-TTGC
CTGA-------------------TTCTGTAACTATGTATGGC----AATGGATGTTAGCTAGACTTAATGTGGTAATCAT
TTTGCAATATATACAAATATTGAATCATTATGTTGTACACCAGAAACCAGAAAGATAA-TGTTGTATGTCAATTATACCT
CAATAAAACTTTTTTAAAAGAAAAAAAAAAAAAAA---AGATTGCCTGA-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----AATGAAATATACAAAAGTAATCTC-TTTTAGGAGTAGGACCCCAGGGGATTT
>Canis_familiaris
TCCTTATGGGCAAAAATAAACAATTACAGAT-ACGGAATTTAGAAGATAGAAAA--TTCTATGT-AAAA---AAA-TTAC
CTGA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----AATGAAATACATAAAAGTAGCCTCTTTTTAGGAGTGTGACCCCAGGTGATTT
>Felis_catus
TCCTTAAAGGCAAAAATTAACAAT-ACAGAT-ACTGCATTTAGAGAACAGAGAAAATTCTGTTAAAAAA---AAATTTGC
CCGA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------GGGGCACCTGGGTGTCTCAGTTGGTTGA
GAGTCCAATTCTTGGTTTCAGCTCAGGTCATGATCTCACAGTTCGTGAGCCTGAGCCCCACATTGGGCTCTGTGCTGACA
G-------TGTGGGGCCTGCTTGGGATT----------CTCTCTCTCTGCCCCTCCCCTGCTCATGCTCTG----TTTCT
CTCTCAAATTAGGTACACTTAACTAAAATAAAATAAAATAAAATAAAATTAAATTAAATTAAATTAAATTAAAATGCCTG
A---AATGAAATATACAAAAGGAATCTC-TCTTAAGAGTGGGACCCCAGGTGATTT
>Manis_pentadactyla
TCCCCAAAGGCTAAAATTAACAAT-ACAGAGAATTGCATGTAGAGACCAGAGAAAGTTCTACATTTTAA---AAA-TTGC
CTGA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----AATGAAATAT-CAAAAGTAATCTC-TT--GAGAG---GATCTGAGCAGACAC
>Myotis_myotis
TCTTTAAGGACTAAAATTAACAAT-ATAGTTAATTATATTTAGAGGACAGAGAAAATTCTATGT---AA---AAA-TTGC
TTGA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----AACGAAATATACAAAAGTAATCTC-TTTTCAAAGTAGGATTCCAGGAGATTT
>Rousettus_aegyptiacus
TCCTTAAGAGCTAAAATGAACAAT-ATAAATAACTGCATTTAGAGAGCAGAAAAAATTCTATGT---TA---AAA-TTGC
CTGA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----AATGAAATACACAAAAGTAATCTC-TTTTAGGAGTAGGATGCCAGGTGATTT
>Condylura_cristata
TTCTTAAGGACTAGAACAAACAAT-ACAGGTAATTGTATTTAGA---TAGAAAAAATTCGATAT-AAAA---TGA-TTGC
CTGA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----AATGAAATACCTGAAAGTAATCTT-TTTTAGAAG---AATCTCAGCTGATTT
>Uropsilus_gracilis
TCCTAA---------------------------CTGCATTTAGAGAG-AGAAAA--TCCTATATAAAAA---AGA-TTGG
CTGA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----AATGAAATACATGAACATAATCTC-CTATAGAAG---AACCTCAGGTGATTT
>Galeopterus_variegatus
TCCTTAATGGCTAAAACTAATGAT-GCACATAATTGCATTTTGAGAACAGAGAAAA--CTAT------A---CCA-TTCC
CTGA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----AATGAAATATGCAAAAGTA-TCTC-TTTTAGGAG------------TGACTT



Horse17_LTR

>ERV1-4N-EC_LTR
-------------------------------------------------------------------TGAAGGGGTTCAG
AACAGGCCTCCCCAAGATGTGCCACTTTGGCATGTGGAATATTTTGAGCTAAAGGCAATCNAGA-CCCTGTGGGCTCAAG
AGAAACTTTT-ACCTCTCCCTTAA---------AGAATTTAAATTGGGGGCCTTGCCCATAATAAGAGTTATTACCAGAA
ATAAATTTTTAT--------GACCTATCTGTATGGCAGGGCAAACCTCTAATTACTGAACATCTGCTCTTCTTATCATCC
TGTGAATTACCCTCCTCCCCTCTGAAGCCTCAGGCCCCTATC--CCATTCCTTAGCTCAAGATGGCATATATACCTCATT
TTACCTTTTTGTCTCTGAACCTCTCATGTATGTGGGGTCTCTGACTCTCTCATGTATGTGGGGTTCCCGTATNTATGNAA
TTAAATTTGATTTTCTCCTGTTAATCTGTCTCATGTCAATTTAATTCTTAGACCAGCCAGAAGAACCTAGAAGGGTAG-A
GGAAAATTTCTTCCTCCCCCACA---------------------------------------------------------
----------------------
>Equus_caballus
GAGATATTTCACTGTACTTGA--GGCATGAGC-----TTCAGATCCCTTCTGCCTGG---ACTG---TGAGAGGGAGCAG
AATACACCACCCCAGCACGTGCCACTTTGGCATGTGGATTATTCTGAGCTGAAGACAATCTGGGGCCCAGCAGACTCAGG
AAGAGCTTTTGACCTCCCTCTTAATTGACTAAAAGAATTTAGATGGGGGGCCTGTAGCAGGAAGAGAGCTGTTATCAGAG
ATAGCTTTTTATGTCAGAAAGACTCATCTGCGTGGCAGGGCAGACACTTGTTTACCCAACGTTCGCTCTTCTCATCTTCC
TGTGAATCATCTCCCTCTGCTTTGAAACC-CAGATCACTA-CATCTTCTCCTTAGTTCAGGATGGTGTATAAGCTTCA-G
TTACTTGACCG-CCACG-------------------------GAGTCTCATACTTTTATGGGGCTTCCATACATATG---
--AAATTTGTTTTTCTCCTATTAATCTGTCTTTTGTCAACTTAATTATTAGACCAGCCA-AAGAACTTAAAAGGGAAGAA
GGGAAAAGTTTTCTGCCCCTATA---ACT-G---TAACGG----TATTCTCTGAGT----TAAAAAAGAAT--TACT---
---ATACTATCCTTACCTTAAG
>Ceratotherium_simum
GAGACATTTCACTGTACTTGC--TGCGTGATC-----TTCAGATCCCTTCTCCCTGG---ACTA---TGAGAGGGAGCAG
AATATGCCACCCCAG-ATGCGCCATTTTGGCATGTGGATTATTTTGAGCTGAAGACAATCTGGGGCCCAGCAGATTCAGG
AAGAGATTTTTACCTCCCCATTAACTGACTAAAAGAATTTAGATAGGGGGCCTGTACCAGGAACAGAGCCATTGCCAGAT
ATAAAAAGTTATATCAGAAAGACTTATCTGCTTGGCAAGGCAAACATTTGTTTACCAAACTTTTGCTCTTCTCATCTTCC
TGTGAATTGTCTTCCTCCCCTTTGAAGCCCCAGATCCCTACCATCCTCTCCTTGGTTCAGGATGGCATATAAGTCTCA-C
TTACCTGACTG-CCAGG-------------------------GAGTCTCATATTTTTATG-GGCTTCCATAAGTATG---
--AAATTTGTTTTTCTCCTCACAATCTGTCTTATGTCAATTTAATTATTAGACCAGCCA-AAGAACCTAGAAGGGAAGAA
GGGAAAAGTTTTCTGCCCCTCCA---ACT-G---TAACTG----TACTCTCTGAGA----TAAAAAAGAAT--TACT---
---AATCTATGTTTACCTTAAA
>Myotis_myotis
AAGATATTTCACTGCCCTTC---TGCATGATC-----CTCAGATCTCTTCTGATTGA---ACTG---TGAGGAGGAGGAG
AGTATAACACCCAAA----------------AGGTGGATTATTTGGAACTGAAGACAAAATGGG---CTGCAAACTCATG
AAGAGTTTTTAATCTCC---TTAACTTCCTAA---AGCCTTGAGCGGTGGCCTGCACAAGGAAGACAGCTATCACCAGAG
ATAAA-GTTTAGGTCAGAAAGACTTAGCTATATGGCCTGGCCAG-ATCTGTTTACCAAACCTCTGCTCTTCTCCTCATTC
TGTGAATAGTCTTCCTTCCCTTTCAAACCCCAGAGCCCAACCTCCTTCTTCTGAGCTCAAGATGGCAGATAAGCCTCA-A
TTACCTGACTGTCCAAA-------------------------GAGTCTCATGTTTTTATGCAGCTCTCATACACACT---
--ACATTTGTTTTTCTGATGTTAATCAGTTTCATGTCAATTTAATGATTAGA----CCA-AAGAACCTAGAATAGAAGAA
GGGAAAAGTTTTCGGCCCCTACA---ATT-G---TAACTG----TATTCTCTGAGT--------GAAGAAT--TACT---
---ATACAAAAAAA-----AAG
>Rousettus_aegyptiacus
GAGATATTTTACTGCACTTGC--TCTATGACC-----TTCAGATCCCTTTTTCCTGA---ATTG---CTTGA------AG
AGTAGGACACCCCACAATGTGACACTTGGGCATGTGGATTATTTCAAACTGAAGAGAATCTAGTGCTCAGCAGACTCAGG
AAGAGCTTTTTACCTCCTCCTTAACTACCAAAAATAA--TGGAGAGGGGACTTGCACTGTGAAGAAAGCTATTACCAGAG
ATAACTTTTTACACCAGAAAGACTTATCTATACAGCACAGCAAACATTTGTTTATTAAACATGTGTTCTTCTCATCGTCC
TGTGAATTGTCTCCCTCCCCTTTGAAGTCCC-------------TTTCTCCTTAGCTCAGGATAGTATTTAAGTCTCG-A
TTACCTGACTT-GTCAG-------------------------GAG--TCATATTTTTATGAGGCTCTCATGTGTCTG---
--AAATTTGTTTTTATCCTGTTGATCTGTTTTATGTCAATTGAATTATTAGA----CCA-AAGAATCTA-----GAAGAA
GGGGAAAGTTTTCGGCTCCTACA---ATT-G---TAGCTA----TACTTTTAACTT---------AAGAAG--TACT---
---ATACTATTCTTACCTTAAG
>Canis_familiaris
GAGGTATTTCACCGCACTTGTTATATATGATC-----TTCGGATCCCTTCTACTTCG-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------ACTAA---AAACCT----TATTTTCTGAGT----TGAGAAAGAAA--GAGT---
---GTCCTAGGTTTACTTTAAG
>Felis_catus
GAGGTATTTCACTACACTTGC--TGCATGA-C-----TTCAGACCCCTTCTACTTGG-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------ACT-C---TGCCCA----TACTTTCTGGGT----TAAGAAAGAAA--CAGA---
---GTACTATGTTTACTTTAAG
>Manis_pentadactyla
GAGATAATTCACTATACCCAC--CAAATGATCTTCATTTCAGATCTCTTCTGCCTTC-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------AGT-G---TGACTAAGCTTCCTTTCTGAGTTAAGTAAGAAAGAAT--TACT---
---GTACTACTTTTACCTCAAG
>Sus_scrofa
GATATATTTCACTGTACTTGC--TGTGTGGTC-----CTCATTTTCCTTTTGTCTAG-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------ACT-G---TAACTA----AACACTGTGAAT----TAGGAAAGAATACTACTAAA
GAAATACTGCATTTACTTGATG
>Bos_taurus
GGGATATTTAACTGCACTTGC--TGTGTGATC-----TTGAGATCCATTCTGCCTAG-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------ACT-G---TAACTA----TATTTTCTGAAT----TAACAAAGGAT--TACC---
---ATACTACATTTACCTTAAG
>Condylura_cristata
GAGATATCTTACTTAATTTGT--TACACCATC-----TTCAGATCCTTTCTGCCTAG-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------ACT-G---TAACTA----CAGTTTCTAAGT--------------------T---
---ATACTACAATTATCTTAAA
>Solenodon_paradoxus
GAAATTTTTCACTGCAATTG---TTTATGATC-----TTCATTTCCATTCT-TCTAA-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------ATT-G---TAACAA----CACTTCCTGAGT----TAAGATAGAAT--TAAT---
---TCATTACATTTATCTGAAG
>Galeopterus_variegatus
GAGATATTTTACTGCACATGC--TGTGTGGCC-----CTCAGATCCCATCTGTCCAG-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------ACT-G---TAAGTA----TGCTTTCTGAGA----CACAAAAGAAT--TAAT---
---ACACTATATTTACCTTAAG



Horse18_LTR

>ERV1-4N-EC_LTR
-------------------------------------------------------------TGTGGGGGAGGAAGAAATT
TTCC--TCTACCCTTCTAGGTTCTTCTGGCTGGTCTAAGAATTAAATTGACATGAGACAGATTAACAGGAG-AAAATCAA
ATTTAATTNCATANATACGGGAACCCCACATACATGAGAGAGTCAGAGACCCCACATACATGAGAGGTTCAGAGACAAAA
AGGTAAAATGAGGTATATATGCCATCTTGAGCTAAGGA--ATGGGATAGGGGCCTGAGGCTTCAGAGGGGAGGAGGGTAA
TTCACAGGATGATAAGAAGAGCAGATGTTCAGTAATTAGAGGTTTGCCCTGCCATACAGATAGGTC--------ATAAA-
-AATTTATTTCTGGTAATAACTCTTATTATGGG------CAAGGCCCCCAATTTAAATTCTT------------------
---------------------------------------TAAGGGAGAGGT-AAAAGTTTCTCTTGAGCCCACAGGGTCT
NGATTGCCTTTAGCTCAAAATATTCCACATGCCAAAGTGGCACATCTTGGGGAGGCCTGTTCTGAACCCCTTCA------
-----------------------------------------------------------
>Canis_familiaris
ATGTTCATAAGGATG---AATATCAGATAAAACTTCCTCTTCTGTCTGATG---TCGG---TCTAGGGGC---AAAACTC
TTCCCTTC----------CATT-TGCTGGCCAGTATAATAATTAATTTGACATAGGACAGATTAACAGGAG-AAAA-CAA
ATTTAATTATGTACATAG-----------------G-GGAGCCC-----CCACAAAGACATGA-AAACTCAAAATCAATC
ATG-CATTTGAGGTTAAT-TAGAGTCCTGAGCTAAGGAGGAGAGACTAAGGGTCTGAGACTTCAAAGGAGAGGAAGACAA
TTCACAGGGAGTTGAGAAGAGGAAAGGCACAGTCAACAAATACATGCCACACCAGGCAGGTAAGTCTTTCTGATATAAAT
AACATTATCTCTGCTAATAGCTGTTTTCCTGG------TACAGGCTCCCTATCTGAGGTCTTTTAGGCAATTAAAGGAGA
GGTAATAAACTAGAAAAAATTAAAAAATAAAATAAAAAATAAAGGAGAGGTAAAAAGTTTTTCTTGAGTCTGCTGGGTCT
TCAGTGCCTTCATCTCAAAATAACCCACATACCAAAGCGATGCATTTCAGCATGGCACGTTCTGCTCCCCTTCA---TGG
G---TGTGAAC-TCTGAGCAGAG--TTGGCGCTCATCAATATTGTGAGGAAGAGGTCAG
>Felis_catus
ATATCCGTAAGGATG---AACAC-------AAATTCCTCTTCTCTCTGACA---TAGA---TCTAGGGGC-AAAAAACTT
TTCCCTTCTTCCATTCTACATT-TACTAGCTGGTGTAATAATTAAATTGACATAAGACAGAACAATAGGAG-AGAA-CAA
AGTTAATGATGTACATAT-AGAG------------G-GGGGAGC-----CCACAAAGACATAA-AAACTCAAAGGCAATC
AGT-CAATTGGGGCTTATGTACAGTCTTGAGCTAAGGAGGAGAAAGTAAAGGTCTGGAATTTCAAAGAAGAGGAAGACTA
TTCAGGTGAAGATGAGAAGAGGAAATGCTTGGTAAACAGAGGTGTACCATGCCATACAGATAAGTCTT----------AT
AAAGTTATCTCTGTTTATAACTGTCTTCCTGG------TACAGGCTCCCTATCTAAATCCTTTTAGGCAAT---------
---------------------------------------TAAAGGAGAGGTAAAAAGTTTGTCTTGAGTCTGCTGGGTCT
TCATTGCCTTCAGCTCAAAAGAACCTAAAGGCCAAAGTGATGGATCTCATCATGGCACACTTTGCTCCCTCTTG---TGG
G---TTTTAACTTCTGAGCAGAG--TTGGTTCTCATCAGTACTATGATGATGAGGTCAA
>Equus_caballus
ATGTTCATAAGGGTG---AATATGAGACTGAAATTCCTCTTCTATCTGATA---CAGG---TATAGGGAC-AGAAAACTT
TTCCTTTCTTCCCTTCTTGGTT-TGTTCTCTGGTCTAATAATCAAATTGATATAAGATAGATTAACAGGAGAAAAA-CAA
AGTTATTTACATATGTAC-------------------AGGAGCC-----ACACAAAGACATGA-AGACTTGAAGGCAGTC
AGG-CAATTGAGGCTTATATA---TCCTGAACTAAGGACAAGTGGGTAGCAGTCTGGAGCTTCAAAGGGGAGGAAGACAA
T--ACAGGAAGATGAGAAGAACGAATGTTTGGTAAACAAATGTTTGCCATGACATGAAGATAAGTCTTTCTGAAAT--TA
AAAGTTATTTCTGGTAATAGCACTTTTCTTGG------TACAGGCCCCCCATCTAAATTCTTTTGTGCAGT---------
---------------------------------------TAAGGGAAAGGTAAAAA-CTTTTCCTGAGTCTGCTGGATCT
TAATCACCTT-AGCACAAAATAATCCACATGCCAAAGTGGCACATTTTGGTGTGGTGCATTCTACTCCCCTTCA---TGG
T---TTTTAGCTTCTGAGCAGAG--ATAGTGCTCATTAATACTGTGATGATGAG--CAG
>Ceratotherium_simum
ATGTTCATAAGGGTG---AATATCAGACTGAAATTCCTCTTGTATCTGATA---TGGG---TGTAGGGGT-AGAAAACTT
TTCCCTTCTTCCCTTCTAGGTT-TATTGTCTGGTCTAATAATTAAATTGATATAAAATAGATTAACAGGAGAAAAA-CAA
ATTTAATTACATATGTAC-------------------GGGAGCT-----CCACAAAGACATGA-AGACTCAAAGACAGTC
AGG-AAATTGAGGCTTATATA---TCCTGAGCTAAGGAGAAGTGGGTATGGGTCTGGGGCTTCAAAGGGGAGGAAAACAA
TTCACAGGAAGATGAGAAGAGCAAACGTTTGGTAAACAAATATTTGCCACGACATGCAGATAAGTCTTTCTGATAT--AA
AAAGTTATTTCTGGTAACAGCACTTTCCCAGGGGTTTAGATAGGCTCCCTATCTAAATTCTTTTATTCAGT---------
---------------------------------------TAAGGGAGAGATTAAAA-CATTTTCTGAATCTGCTGGGTCT
TAATTGCCTTCAGCACAAAATAATCCACATGCCACAGTGGCACATTTTGT-GTGGCAAATTCTGCTGCCCTTCA---TGG
A---TTTTAGCTTCTGAGCAGAG--ATGGTGCTCATTAATACTGTGAGGATGG---CAG
>Sus_scrofa
ATGTTCATAAAGGTGAATAATATCAGACCAAAATTCCTCTTCTATTTGATA-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------CAG
G---TTTTAACTTCTGAGCCCAT--TTGGTGCACATGAATACGATCATGATGAAGACAG
>Tursiops_truncatus
GTGTTCATAAAGGTG---AACATCAGACTAAAATTCCTCTTCTATCTGATA-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------CGG
G---TTTTAACTTCTGAGCAGAG--TTGGTGCTCATCAATACCATAATGATGAAGACAG
>Myotis_myotis
AAGTTCATAAGCTTG---AATATCAGACTGAAATTTATCTTCTCTCTAATA-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------TGG
A---TTGTAGCTTCTATACAGAT--TTGGCGCTCAC---TACTGGGAATATAAAGACTG
>Rousettus_aegyptiacus
ATGTTCATAAAGTTG---GTTATCAGACTGATATT-----TCTATCTGATA-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------TGG
A---TTTTAGCTTCTGAGCTGAG--TTGGTGCTAATCAATACTGGAATGATAAGGACTG
>Condylura_cristata
AAATTCCTAAGAGTG---AATTTCAGACTGAAATTCCCTTTCTATCTGGAA-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------TGG
A---TTTTAGCTT-TGAACTGAG--TTGATGTTCATCAAAACTATGATGATAAAAACAG
>Scalopus_aquaticus
ATGTTCATAAGGGTG---AATTTCAGACTGAAATTCCTTTTCTATCTGAAA-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------TGG
A---TTTTAGCTTCTGAACTGAG--TTGGTATTCATCAAAACTATGATGATAAAGACAG
>Homo_sapiens
ATGTTCTTAAGGGCA---AATAGTTGACTGAAATTTTTCTTGTATGTGATA-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------TGG
G---TTTTAGCTTCTGAGCAGACACTTGACACTCATCAGTGTTGTAGTAATGAGGATAG



Horse19_LINE

>L1MA9_3END
---------------------------------------------------------------------------TTTTT
CCAGC-------TTTATTGAGG-TATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATA
TACGTATACAT--------------TGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTT
AC---CATTTTTTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAAATTTCAAGTATACAATACAGTATTATT
AACTATAGTCACCATGCTGTACATTAGATCTCCAGAACTTATTCATCC--------------------------------
----------------------------------------------------------------
>Sus_scrofa
GGCAAAATCTTTT-CCTCCACAAAAGTCCATAAATGTAATTAAAATAAATT---TCATACACTTTT--------TTCTTT
TTATC----TTTTTTATTGAGATTATAATTGACATAT-AACATTATGTTGGTTTCATCTGTACAATATAATGTAT--ATA
TTTGTATATGTACTTGTATATATACTGCCAAATGATAACCACAATAAGTCTAATTAAC--ATCAATCACCATACATGGTT
GCAAACTTTTTTCTT----------GGGCTTTTAAGATTTACACTCTTAGCAACTTTCAAATATACAATACAGTGTAATT
AACTCTAGTCACACTTCTCTACATCACATCACCAGAACTTACTTATCTTATAACTAGATGTTTATG-CATTTGA---CCA
CATACTTTT---CAA-TGTCATAATTATAGTGGGTATTCTATGCTTGGCCATAGGTATGATCTA
>Tursiops_truncatus
GGCAAAGTCTTTT-CCTCCACAGAAGTCCACAAAGGGAA-TAAGATAAATT---CCACATACATTT---TTTTTTACTTT
TTATCTTTTTTTTTTATTGAGG-GATAATTTACATAT-AACATTATGTTGGTTTCGGGTATACAACATAGTGATTCAATA
TTTGTGTATAT--------------TGCCAAATGATCACCACAGTAAGTCTAGTTAAC--ATCTATCACCATACATCATT
ACAAACTTTTTTTTCCATATGATGAGGGGTTTTAAGATT-----TCTTAGCAACTTTCCAATATACCATACAGTATTATT
AGCTATAGTCACTATACTGTACATTACATCCCCAGGACTTATTTATCTTATAACTAGAAGTTTATGTC-TTTGA---CCA
CATACTTTT---AAA-TGTAGTAATTATAGTGGCACTTCTGTGCTTGG-CATAGGTACGATCCA
>Equus_caballus
GGCAAAATCTATT-CCTCCACAAAAGTCCATAAAGGTAA-TAAAATAAATT---CCATATATTCTT---------TTTTT
TCATC---TTTTTTTATTGAGA-GATAATTGACATAT-AACATTATATTAGTTTCAGGTGTACAATATAATGATTTGATA
TTTGTATATGT--------------TGTGGAATGATCACCACAATAAG-----------------------TACGTGGTT
ACAAACTTTTTCTTTCTTGTGATGAGGACTGCTAAGATTTACTCTCTTAGCAACTTTCAAATATGCAGTACTGTCTTATT
AACTGTAGTCACCATGCTGTATATTACATCTCCATGACTTATTTATTTTATAACTGGAACTTCGTATCTTTTGA---CCA
CATACTTTT---AAA-TGTAGTAATTCTAGCGTCTGTTCTGTGCTTAG-CATAGGTATGACCCA
>Ceratotherium_simum
GGCAAAATCTATT-TCTCTACCAAAGTCC------GTAA-TAAAATAAATT---TCACATACTTCT-----TTTTTCTTT
TTATC----TTTTTTATTGAGA-TATAATTGACATAT-AACATTACATTAGTTTCAAGTGTACAATATAATGATTCAATA
TTTGTATATGT--------------TGCGAAATGGTCACCATAATAAATCTAGTTAAC--ATCCATCA--ACATATAGTT
GCAAACTTTTTTTCT--TGTGATGAGGACTTTTAAGATTTAATCTCTTAGCAACTTTCAAATATGCAATACAGTATTATG
AACTATAGTCACCTTGTTGTGCATTACATCTCCATGACTTATTTATATTATAACTGAAAGTTTGTATCTTTTGA---CCA
CATACTTTT---AAA-TGTAGTAATTATAGTGGCTATTCTCTGCTTGG-CATAGGTATGACCCC
>Canis_familiaris
GGCAGAATTAATT-CTTCCGCTAAAGTCAGTGAGGACAA-TAAAATAAATT-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------CCA
CCTACTTTT---AAA-TGTAGTAATTATAGAGGCTATTATATACCTGG-CATAGGTATGATCCA
>Felis_catus
GGCAAAATGTATT-CCTCCACAAAAGTCAATACGGGTAA-TAAAATAAATT-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------CCA
CATACTTTC---AAA-TGTAGTAATTATAGCGGTTATTATGTGCTTGG-CATAGGTATGATCCA
>Manis_pentadactyla
GGTAAAATCTATT-CTTCCACAAAAG---------GTGA-TAAAAT----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------CCA
TGTACTTTT---TAA-AGTAGTAATTATAGTGGCTATTCTGTGCTTGG-CATAGGTATGATCCG
>Myotis_myotis
GGCAAAATATATTCCCTCCACACAAGTCCA-AAGGGTCA-TAAAAGTAATT-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------CCA
TATTTTTTA---AAA-TGTAGTAATTATAGTGG-----CTTTGCTCAG-CAAAGGCATGATCCA
>Rousettus_aegyptiacus
GGCAAAATCTATT-CCTCCACAAAAGTCCATTAAAGCAA-TAAAATAAATT-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------CTA
CATTCTTTT---AAA-TATAGTAATAATAGTGGCTAGTCTATGCTCAG-CATAGATCTGACCCG
>Condylura_cristata
GGCACTATCTTTT-CT---ACAATAGTCAATCGAGATAA-TAAGATAAATT-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------CTA
TATACTTTT---AAA-TGTGGTAA--ATAGTGCCTATTCTCTGCTTGG-CATATATATAATCCA
>Sorex_araneus
GACAAAATGTATT-TCTCCAAAAAATTCCATAGAAGTAA------TAAATC-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------CCA
CATACTTTA---AAAATGTAGTAATTATAGTAGCTATTCTGAGCCTGG-CATGGGTAAGATCCA
>Heterocephalus_glaber
GGCAAAAT--ATT-TCCCCACAAAAATTCATAAAGATAA-TGGAATAAACT-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------CTC
CATACTTTT---TGG-CATAGTAATTATTGTGACTATTCTTTGTATGG-CAGAAATTTGTTCCA



Horse19_LTR

>MER21C
---------------------------------------------------------------------TGTGTA---GG
-AAAAAACAAA--------------CTGTTTTTCT------CTACTCTCACAA-------CACTTCTG-NCACCAAATGT
GTGGG-GTTTTTCCCACACACCAAGCAATTCTCCAGCGGACACCAGCTGGGTGTCCTACAATTCAATTCAATTCTGACAC
TATCTACCTGGAGNTAGCGTCAGATCCCACAGGTTAAGGGCTCAGTCCCACAAGACTGC-CCCCACTTCAGACGCCAATC
GCAAGT--------CCCAGGTTGTGACCTGTACTTCTGACCGACC-GGCTATAAATCGGGGGTTCCCACGACCCCCTCCT
C---GGGTTCGATAATTTGCTAGAGCGGCTCACAGAACTCAGGGAAACACTTTACTTACGTTTACCGGTTTAT-------
------------------------TATAAAGGATATTACAAAGGATACAGATGAACAGCCAGATGGAAGAGATGCATAGG
GCAAGGTATGTGGGAAG-----GGGCGC-GGAGCTTCCATGCCCTC----TCCGGGCGCGCCACCCTCCCGGCACCTCCA
CGTGTTCAGCAACCCGGAAGCTCTCCGAACCCCGTCCT-TTNGGGTTTTTATGGAGGCTTCATTACGTAGGCATGATTGA
TTANATCATTGGCCATTGGTGATCAACTCAACCTTCAGCCCCTCTCCCCTCCCCGGAG-GTCG-GGGGTGGGGCTGAAAG
TTCCAACCCTCTAATCACATGG-TTGGTTCCCCTGGCGACCAGCCCCCATCCTGAGGCTATCCAGGAGCCCCCAGCCAAG
AGTCACCTCATTAGAACAAAAGACGCTCC---------TATCACCCAGGAAATTCCAAGGGTCTTAGGAGCTCTGTGTCA
GGAACCGGGGTCAAAGACCAA-------ATATTAGAACAAAAGATTCTCCTAGCGCCCCTATCGCTCA------------
----------------------------------------------------
>Equus_caballus
ATATCCTCT-------T-GGGAGCATCTGCAGCATTTCCAAAAAGAAGTCTGGGTTTT---GGGAC---TATATT---GG
AAAAAAACCCAG---TTTTGCCCTTCTGTGTTTTTCCTTTACTACTCACACAGAACACTTCACTTCTGGTCACCAAGTGT
GTGGGTGTTTTTCCC-CACAC-CAATAATTGTC-TGCG-ACATCAGCTGGGCATCCTACAATTTAGCTCAATTCTGACAC
TATCTACCTGGAGAGAGCATCAGATCCCAGAGGCT--GGGCTCAGTCCCACAAGACTGCTCCCCATGTCAGATGCCAATC
GCAAGCAGTAGGTCCCCAGGTCA--CCCACAACTTCTGTCCAACGTGGCTACAAATCAGTGGTTCCCATGACCTCCTCCC
CCTTGGATTCGATTATTTGCTAGAACAGCTCATAGAACTCAGGGAAACACT-GACTTATGTTTACCAGTTTAT-------
-------------------------------TGTATGATAAAGGAAACAGATGAATAGCCAGATG-AAGAGATGCATAGG
GTGAGGT--CTGGGAGGGTCCCGAGCGCAGGAGCTTCTGT--CCCTGGAGTTGGGGTGTGTCA-CCTCCCGGTATGTGCA
CGTGTTCACCGACCTGGGAGCTCTCTGAATCCCATACTATTGGGCTTTTTGTGGAGGCTTCATCACGTAGACATGACCCA
T------------CACT-------AATTCCATTTTCAGCCCCTCTCCCGTCTCAAGAGAACGGTGGGGCGGGGCTGAAAA
TTCCAAGCTTCCAGTCA--TGGCTTGGTCTTTCTGGTGACCAGCCCCCGTCCACGAGC-----------CCAC---CCAG
AGTCACCTCATTAGAACAAAAGATGCTCCCAGTGCTCTTATCACTTGGGAAATTACAAGGGTTTTAGGAGCTGTGCGCCA
GGAACCAGGGGCAGAGGCCAG--CACAGATATT-----------TTCTATTATCTCACA------------GGGAC---A
TACATCTA-TTGAAGCCATGTGTTGGTGTGGGTCCCTCAGATTTTCTGGAGC
>Ceratotherium_simum
TTATCCTCT-------T-AGGAGCATCTGCAACATTTCCAAAAAGAAGTCTGTGTTTT---GGGAC---TGTATT---GG
AAAAAAAATCCAGTTTTTCTCCCTTCTGTGTTTTTCCTTTACTACTCACACAAAACACTTCAGTTCTGGTCACCAA--CT
GTGGGTGTTTTTCCC-CACAC-CAATAATTCTC-TGTG-ACACCAGCTGGGTGTCCTATAATTTAGCTCAATT-TGACAC
TATCTACCTGGAGATAGCATCAGATCTCACAGGTTAAGGGCTCAGTCCCACAAGACTGCTCCCCACTTCAGATGCCAATC
ACAAGTATGAGGTCCCCAGGTTA--CCCACAACTTCTGTCCAACTTGGCTACAAATCAGAGGTTCCCATGACTTCCTCCC
CATTGGATTCAATTATTTGCTAAAACAGCTCACAGAACTCAGGGAAACACT-TACTTACATTTACCAGTTTAT-------
-------------------------------TGTATAATAAAGGATACAGACGAACAGCCAGATG-AAGAGGCTCATAGG
GCAAGGT--CTGGGAGGGTCCTGAGCATAGGAGCTTCTGTCCCCCTGGAGTTGGGGTGCATCACCCTTCTGGTATGTGGA
TGTGTTCACCAACCTGGGAGCTCTCTGAACCCCATACTACTGGGACTTTTGTGGAGGCTTCATCACGTGGGCATGATTGA
T------------CATT-------AATTCAGTTTTCAGCCCCTCTCCTTTCTCAAGAGAATGG-GGGGCAGGGCTGAAAA
GTCCAAGCTTCTAATCA--TGGCTTAGTCTTTCTGGTGACCAGCCCTCATCCAGGAGCCATCTAGGAGCTCAC---TCAG
AGTCACCTCATTAGAACAAAAGATGCTCCCAGGGCTCTTGTAACCTAGGAAATTACAAGGGTTTTAGGAGCTCTGTGCCA
GGAACCAGGGGCAGAGACCAG--TATATATATT-----------TTCTATTATCTCACG------------GGGAC---A
TATGTCTACTTGAAGTCATGTGTCAATGTGGGTCCCTCAGATTCTCTGGAGC
>Myotis_myotis
CTATCCTCT-------TAAGGAGCATCTGCAGCATTTCCA------------GGTTTT---GGGAC---TGTATTGGGGG
GAAAAAAGCTAG--CGTCTCCCCTTCTGTGTGTCTCTTTTACTGCTCACGCAAAACACATCACTTCTGGATAGCACATGT
GTGGGTTTCTCCCCC-CACATTAAACAGTTCTC-TGTG-ACACTAGGCTGGTGTCCTATAATTTAACTCAATTCTGAGAC
TATCTACCTGGAGATGGTGTCAGATCCCACAGGTTAAGGGCTCAGTCCCACAAAACTGTCTCCCACGTCAGGTGCTAGTT
GCAAGTAGTAGGTCCTGAGGTTA--CCCATAACTTCTGTCCATCTTGGCTACAAATCAGAGATTCTCATGACCTCCTCCC
CCAAGGATTAGATTATTTGCTAGAACAGCTCACAGGACTCAGGGAAACACT-TACTTACATTGATCAATTTAT-------
--------------------------TAAAGGGTATGCTAAAGGATACAGATGAACAGCCAGATG-GAGAGATACAT-GG
GCCCAGT--CTGGGAGGGTCCCAAGTGCAGGAACTTCTGT-CCCGTAGAGTTGGGGTTCGACACCCGCCTGGTACATGAA
TATGCGCACCAACCTGGCAGCTCCCTGAACAGCATGCCGCTGGGACTTTTATGAAGGCTTCATC-TGTAGGTATGGTCGA
T------------TATT-------AACTCCATTTAAAGCCCTTCT-CTTTCTCAAGAGAATG--GGGGTGGGGCTGAACA
TTCCAAGCTTCCATTCA--CAGCTTCATCTTTCTGGTGACTAGCCCTCATTT-GGAACATTCCAGGAACCCAC---CAAG
AGTCACTGCATCAGAGCAAAAGACACTTC---------TATCACCAAGGAAATTACAAGGATTTCAGGGCCTCTGTGCCA
GGAACTGGGGGCAGAGGCCAA----TATATATT-----------TTCTATGATCTCGCCA-----------GGGAC---A
TATATTTCCTTGTAGTCATGTGTTGATGTGGGTCTCTCGGATTCTCTGGGGC
>Rousettus_aegyptiacus
TTATCCTTT-------T-AGGAGCATCTGCAACATTTCCAAAAAGAAGTCCAGGTTTT----GGAC---TGTATT---GG
AAAGAAACCTAC--CTCTTCCCCTTCTGCGCGTCTCCTTTACTACTCACAC-AAACTCTTCACTTCTGGTCAT-----GT
GTGTGGATTTTTCCC-ACACT-AAACAATTCTC-TGCA-ATGCCATCTGGGTGTCCTGCAATTTAACTCACTTCTGACAC
TATCTACCTGGAGATGGTATCTGATCCCACAGGTTAAGGGCTCAGTCTCACAAGTTTGCCCCCCACTTCAGATGCCAATG
GCAAGTAGTAGGTACTCAGGTTA--CCCACAACTTCTGTTTGGCCTGGCTACAAATCAGAGGTTCCCATGACCACCTCCC
TGCTGGATTTGATGATTTGCTAGAATAGCTCATGGAACTCAGGGAAATACT-AGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTTTGTTTTAAGGCTATAATAAAGGATACAGATGAACAGCCAGACA-AAGAGATACACAGG
ATGAGGT--CTGGGAGGGTCCTGAGTGTAAGAGCTTCTGTCCCAATGGAGTTAGAGTGCCTCACCCTCCTGGTACGAGGA
TGTGTTCACCAACCTGGGAGCTTCCTGAGCACCGTATTATTGGGCTTTTTATGGAGGCTTTATC-TGTAAGCATGACTGA
T------------CATT-------AACTCCATTTAAAATCCTTTTCCTTTCTCAAGAGAATGT-GGGGTGGAGCTGAAAA
TTCAAAGCTTCTAATCA--TGGCTTCATCTTTCTGGTGAATAGTTTTCATCCAGGAACCATGGAAGAACCCGC---CCAG
AGTCATCTAATCGGAACAAAAGACATTCC---------TATCACCCAGGAAATAACAAGGGTTTCAAGAGCTCTGTGCCA
GGAACCAGTAGCAGAGACTAGTATATATATATT-----------TTCTGTTATCTTACA------------GGGAC---A
TACATCTCCTTGTAGTCATGTGCAGACGCGGGTTCCTTTGATTTTCTGGAGC
>Canis_familiaris
TGATCCTCT-------T-GGGAGCATCTGTAACATTTCCAAAGAGAAGTCCAGGTTTT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------GGGAG---A
TACAGCTTCTTGTAGTCATGTGTTGACAGGG--CCCTCAGATTCTCTAGAAC
>Ailuropoda_melanoleuca
GGGCCCTCTGTAGCACT-GGGAGCCTCGGTAACATTTCCAAAGGGAAGTCTAGATTGG----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------GG-AG---A
TAGAGCGCCCTGCAGTCATGCATTGACGTGG--CCCTCAGATTCTCTAGAGC
>Manis_pentadactyla
TTATCCTTT-------T-AGGAGCATCTGCAACACTTCCAGAAAGAAGTCCAGGTTTT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------GGGAC---A
TACATCTCCATGTAGTCATGTGTTGATGTGG--TCCTCAGATTCTCTGGAGC
>Sus_scrofa
TTATCCTCT-------T-GGGAGCATCTGTAACATTTCCAAAAAGAAGTCCAGGCTTT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------GGGAC---A
CACATCTCCTTGGAGTCATGGGT--------GTCCCTTGGGTTCCTTGCAGC
>Bos_taurus
TTAGTCTCC-------T-AGGATCACCTGCAACATTTCCAAAAAGAATCCCAGGTTTT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------GGGGC---A
TATCTGTCCTTGGAGTCATAC------------------------CTGGAGC
>Condylura_cristata
TTATCCTCT-------T-AGTGACCTCTGTGATATTTCCATGAAGAACTCTGGGC-TT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------AGGTT---G
TATATCTCCCTGTGGCTGTGTGTTGATGTGGCTTCTTCAGATTTGATGGAGC
>Sorex_araneus
TTATCTTCT-------T-AGTATAATTTTCAATATTTATATAAAGAAGTCTAGTTTTG----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------GGGAT---A
CACAACTCCCCATTGGTGTGCATTAATATGGGTCCCCCAGATTCTCAGGAGC
>Homo_sapiens
TTGTCCTCT-------T-AGGAACGTCAGCAACATCTTCAAAAAGAAGGCCCGGCTTT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------GGGAC---A
CACATCTCCTTCTAGTTCTGTGTCAGCGCGGGTTCTTCAGATTCTCTGGGGC



Horse20_LINE

>L1MAB_EC
--------------------------------------------------------------------------TTTTTT
TTTTTCAGTTTTATTGAGATATAATTGACATATAACATTGTATTATGTTTAAGGTGTACAACATAATGATTTGATATATG
TATATATTGTGAAATGATTACCACAAT-----------------------------------------------------
--------------------
>Sus_scrofa
CATTCAGAG-----------TGAGGACCCCCTGAACATGTGGCTGGCATCTGCAG---CAGGGGCAGGTTT------TCT
CTCCCCAGGTTTATTGAGATATAACTGACATATATCTCTGTATAA-GTTTAAGGTACAGAGCATAATAGTTTGATATA--
CATACATTGTAAAATGATA-----------GGGGGG--TAGTCTT---GCAGAGGATCCAGCACCT-AATTCACAGGGTC
TATACTCACTTTGGGTGGTT
>Vicugna_pacos
CAGTCAGAGTGCAGGTGGCCTGGGGACACCCTGAACTTGTGGCTGACATCTGCAG---TGGGAGCAATTTT------TTT
TGGCCTAATTTTAGTGAGATATAATTGACATACATCACTGTGTAA-GTTTAAGGTGCAGAGCATAATAGTTTGACTTA--
TATATATTGTGAAATGATG-----------TGGGGAGGGAGTCCT---GTAAAGAATGGAGCCCCT-AACTCATGGGGTC
TGCACTCACTCTGGGTGATT
>Equus_caballus
CAGTCAGAGCACAGGTGGCCTGGGGATCCCCTGGACCTGTGGCTGGCATCTGTAG---TGGGG-CAGGTTT---------
TTTTCCAGTTATATTGAGATATAACTGACATGTATCACAGTGTAA-GTTTAAGGTGTACAGCATGA---TTTGACTTA--
CACATACTGTGAAATGATA-----------TGGGGG--CGGTCTT---GTGGGGGATTAAGCCTTT-AACTCATAGGGTT
TGCACTAACTCTGGGTGGTT
>Ceratotherium_simum
CAGTCAGAGTATAGGTGGCCTGGGGATCCCCTGGACTTGTGGCTGGCATCTGTGA---TGGGGGCAGTTTT------TTT
TTTTTCAGTTTTATTGAGATATAATTGACATACATCACTGTATGA-GTTTAAGGTGTACAGCATGATGGTTTGACTTA--
CATATACTGTGAAACGACA-----------TGGGGG--CAGTCTT---GTGGAGGATCAAGCCCTT-AACTCACAGGGTT
TGCGCTAACTCGGGGTGGTT
>Canis_familiaris
TAGTCGGAGTGCGAGTGGCCTGGGGATGCCCTGAACTTGTGGCGGGGATCTGTAG-------------------------
--------------------------------------------------------------------------------
------------------------------TTGGAG--CAGTCCT---GTGAAGGATCAAGTCCTT-AATTCGGGGGGTT
TGTGTTAACTGTGGGTAGTT
>Felis_catus
CAGTGAGAGTGTAGGTGGCCTGGGGACACCCTGAGTTCATGGCTGGCATCTGAGC-------------------------
--------------------------------------------------------------------------------
------------------------------TGCAG---CAGTCTT---GTGAAGGATCAAGCCCTT-AACTCATGGGGTT
TGTGCCAACCGTAGGCAGTC
>Manis_pentadactyla
TAGACAGATGGCAGGTGGACTGAGGACCTCCTAAACTTGTGGCTGGCATCTGCAG-------------------------
--------------------------------------------------------------------------------
------------------------------TGGTG---CAGTCCT---ATAGAGGATCAAGTTTT--AACTCATGGGACC
TGTGCGATCTGTGGGTAATT
>Pteropus_vampyrus
TAGCCAGAGTACAGGTGGCCTGGGGATCCCTGGAACTTGTAGCTGGCATCTGCAG-------------------------
--------------------------------------------------------------------------------
------------------------------TGGAGGG-CAGTCTT---GTGGAGGATCAAGCCCTT-AACACATAGGGTT
TGCACTAACTGTGGGTAGTT
>Rhinolophus_ferrumequinum
CAGTCAGAGTGCGGGTGGCCTGGGGACCCCTGGAACTTGTGGCTGACAACTGCAG-------------------------
--------------------------------------------------------------------------------
------------------------------TTGGGG--AAGTCTC---GTGGAGGATCAGGCTCTT--------------
TGTGCTAACTGTGGGTAGTT
>Condylura_cristata
CAGTCAGTG-----------TGGACACGCCCTGAACTTGTGGCTGGTGACTGCAA-------------------------
--------------------------------------------------------------------------------
------------------------------TGGGG---CAACCTT---GTGGAGGATGGAGCCCTTAAAATCATAGG---
-----------TGGATAGCT
>Erinaceus_europaeus
TAGTCAAGATGTGAGTAACCTGGGAACCCTGTGAATCTGTAACTAGTATCTGGAG-------------------------
--------------------------------------------------------------------------------
------------------------------TGGGGG--GAGA--T---GTGTTATACTAAGCCCTC-AACTTATGGGGTT
AGC----ACAGTGGA-GGTT
>Homo_sapiens
CAGTCACTGTGCAGGTGGCCTGGGAACCCCCTGAACTTGCA-CTGGCATCTGAAG-------------------------
--------------------------------------------------------------------------------
------------------------------TGGGAG--CAGTCTT---GTAGAGGGCTGAGCCTTT-AATTTGTGAGGTC
TGTGCTAATTCCGGGTGGTC



Horse20_LTR

>ERV54-EC_LTR
---------------------------------------------------------------TGTTAAAAAACAAA---
ATTCAACTGAGTAAATTTTAAAGATCTTATTGGCTTTATTCAATGATTCATGAATTGGGCAGCATCCAATCTAGCAGATA
GAAAGGAGCTCCGAGGAGCTGTACAAAATGAAAGACTTTTATAGGCAGAAGGGAGCAGGAACAAGGAAGTTATACTAGGC
AAAAAAGTGGATTGGTTATTGCAAGGTTACTTTCCTTTAGGGGATGGCAGGGGTCTATCAGGCAGATTACCTAACTAGTG
CTGATCAGGTGATTCCTGATTGACTGGTTTAAGATTCCATTTCTGGGAGAGCCGAAACTGTAATTAAGTTAAGTCTCGGT
TTGGTGACGTGGGGCT-TAGCATAAGTGACTCCATTTTGGGCCTGTTGTCTTG---TTTTTAACA---------------
-----------------------------------------------
>Equus_caballus
ACGGAACACCCCCATTGAC-ATAAGCTCATCAGTTAGTAAGATGGCCTCCTAG---GTGG---TGTTGAAAGATAAACTG
AGGCATTCTAT-ACATTTTA-AGAGTTTATTTGAGTAA--AAATCAATG-CAAATCATGCAGCACTCAATCTAGC----A
GAAAGGAGCTCCAAAGAGCTGTACAAAATG----GCTTTTATAGGCGGAAAGGAGCAGG-ACAAGGAAGTGATGCTAGAC
AAAAAAGTGAGTTGGTTATCGCAAGGTTACCTTTGTTTAGGGGACGGCAGGGATCTATCAGGTAGATTACCTAACTAGTG
GTGATTAGGCAATTCTTGACTG----GTTTAAGATTCCGTTTCT-CAAGAGCTGAAACTATAA-----TTAAGTCTTGGT
TTGGTGACATGGGGCTTTAGCATAAGTGACTCCATTTTGGGCCTGTTGTCTTGCTTTTTTTAACA---GTGG---GCAGT
TTTCTTACCTAAAGTTGAAATTTGCGTATTTGTAAAATTCATTTATA
>Tapirus_indicus
AGGGAACGCCCCCATCGAC-AACAGCTCACCAGTTAGTAAGATGACCTCCTAG---GTGG---TGGTAGAAGATAAACTG
AGGCATTTTAG-AAATTTTA-AAAGTT----TGAGTAA--AAATCGGTT-TGAATCAGGCAGCATTCAATCTAGCAGATA
GAAAGGAGCTCTGAAGAGCTGTACGAAATGAAAGAATTTTATAGG-GACAGAGAGCAGG-ACAAGGAAGTTATGCTAGAC
AAAAAAGTGGGTTGGTTATCACAAGGTTACATCCCCTTAGGGGATGGCAGGGATCAAACAGGCAGATTACCTAACTGGTG
CTG-----------------------GTTTAAGATTCCATTTCTGGGAGAGCCAAAACTGTAA-----ATAAGTCTTGGT
TTGGTGACATGGGGCTTTAGCATAAGTGACTCCATTTTGGGCTTGTTGTCTTGTTTTTTTTAACA---ATGG---GTAGT
TTTCCTACCTAAAGTTGAAATTTGTCCGTTTGTAAAGTTCATTTATA
>Myotis_myotis
ACAGAACATCTGCATTGAC-ATAAGCTCACTAATTAGTAAAATTGCCTCCTAG---GCAG---TGTTAAAAGATAAACTG
AAGCATATTAA-AATTTATA-AGAGCTTATTTGAATAA--AAATGAATT-CAAATTGGGCAGCATCCAATCTAGCAGATA
GAAAGAAGTTCCAAGGAGCTGTACAAAATG--AGACTTTTATAGGCAGAAGGGAGTAGGAACACGAAAGTTATACTAGAC
AAAAGAT--GATTGGTTATTGCTAAGTTATTCTCCATTAGGGGAAGGCAGGGGTCTACAAAGCAGATTCCCTAA-TAGTT
CTGATCAGGCGATTCCTGACTGACTAGTTTAAGATTCCATTTCTGAGGGAGCTGAAACTGTAA-----TTAAGTCTTGGT
TTGTTGACTTGGGGCTTTGGCGTAAGTGACT-------------------ATTTTCTTTTTATCA---GGGG---GTAGT
T---------------GAAATTT--------GTAAAGTTCATTTATG
>Rousettus_aegyptiacus
AAGCAACACCTGCACTGAC-ATAAGCTCACTCATCAGTAA-ATGGTCTCCTAG---GTTG---TGTTAAAAGGTAAACTA
AGACATATTAA-AATTTTTA-AGAGTTTATTTGAATAA--AAATGGATA-TGAATTGGATAGCATCCAATCTA----CTA
GAAAGGAGCTCTGAGGAGCTGTATAAAATGAAAGACTTTCATTGGCAGAAGGGAGCAGGAACAAGGAAGTTATACTAGGT
AAAACATCAGGTTCGTTATTGCAAGGTTACTTTCCTTTAGGGGATGACAGGGGTCTACTACGCGGGTTCCCTAACTAGTG
CCAATCAGGTGATTCTTTTTTATTT--TTTAAATTTCTTTATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------------NNNNNNNNNNNNNNN---NNNN---NNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>Canis_familiaris
ATGGAATACCCACATTGAC-AT-AGCTCACCAATTAGTAAGATGGCCTCTTAG---GTGG--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------TAGT
CTTCTTACCTAAAGATAGAATTTGCCTATTTATAAAGGTCATTTATA
>Felis_catus
ATGGGACACTCACATTAAT-GT-AGCTCACCAATTAGTAAGATGGCCTCTTAG---ATGT--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------CAGT
CTTCTTCCCTAAAGATAAAATTTTCCTAATTCTAAAGTTCATTTATA
>Manis_pentadactyla
GTCA---ATCCACATTGAC-ATAAACTCACCAATTAGTAAAATGGCCTCTTAG---GTAG--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------ACAGT
TTTCTTATATACAGATTAAATTTGCCTACTTGTAAAGTACATGTATA
>Sus_scrofa
ATGGAACATCGACATTGAC-ATACATTCACCAA-TAGTAAGATGGCCTCTTTG---GCAG--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------GTAGT
CTTCCTACCTAAAAACGAAATGTGACTATTTGGGAAGTTCACTTGTA
>Tursiops_truncatus
ATGGGACACCCACATTGAC-AGAAGCTCATTAA-TAGGAAGATGGCCTCTTTG---GTGG--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------GTAGT
TTTCTTACCTAAAGATAAAATGTGACTATTTGTAAAGTTCATTTATG
>Condylura_cristata
CTGGAACACCCACAATGAC-----------CAATTAGTAAGAGAAATTTGTAG---TGGG--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------GGTTGT
TTTCTTA-------AAGAAATTTTCCTATTTGCAAAG----TCTTTG
>Scalopus_aquaticus
CTGGAACACCCACACTGAT-----------CAATTAGTAAGAGAACCTTGTAG---GCAG--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------ATTGT
TTTCTTACTTAAAACAGAAATTTTCCTATTTGGAAAGC---TTTCCA
>Homo_sapiens
CTAGAACATCTCCATTGACAATAAGCTCATTGATTAGTAAGATGGCTTCCTAT---GTAG--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------GTATT
TTTCTTACCTAACAATGAAATCT--------GTAAAGTTCATTTATA



Horse21_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACA
ACGTGATGTTTTGATATA---CGTATA-CATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCT---
-------CACATAGT---TACCATTTTTTTG----TGTGTGGTGAGAACA------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------?????
>Sus_scrofa
TTTTTCAGTTCTAAT-----------------------GCAGAGTTATTACATTCAACTCATAGGACAGTGTCTCAGTTT
CAGACAATCTC---ATTAACCATCTCAT---AAGAAGGA----AAATGTCTTTATTCCTGATGGATGATCAGAGGGATG-
-ATATCAGCCCATATCCTGCATATTTCACCCATGGGACTTTTATAATTCATCTCTCTAAGGAAAAATCTTACAGTTACTC
---TTAT-------TT---------CATCTAAATTGATGTATAATTGACATAT----ATGGTATTAGTTTCAGGTATACA
ACAGA--GATTCAATATATTGTGTATA-TATTATGAAATGATCACAATA------CTGGTTA--CTCTAAGTTACTG---
-------TACATAGT---TACAATTTTGTTGT---TGTGT-------------TATTGAATCTA---AA-TCTGTTCC--
--CACTC-AGCTACTGACTGACCTGAACGATGAAGAGGATCATGGACTTTTAGATCAGAGGGA-CCCTTAGAGATGAC--
--CTAAAATTTTAATCCTCTCC-CTGTACAGATGAAGAACATGAAGCTGAATTGCCCAAGGTCACTGAGTCAGAGGCATA
TCAGGAACTTGTAGCAATTCTCAGCC-AGAAACATTCTCACCTTGCTACACTGACCTG----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------GGATTATCCTTTCCTAAACATCAAAGAGAGCACAGCCAGACTC
TGACCTAAGTTGACTAGAACCACTTTATTATTAAACGTTTCATGCTGTAAGGTTAAGTAGGAGTTCACATAAATAATGTG
ATTAATACTTTTTTTGTGGCTGTGTGCTTTGTCTCTTCATAA-TTGTGATGTGA-ACATCGTTCACAGAAACGAAGGAGA
TCCTATTCTTTATAAATGCTGTGGAACAGCTGCACATTATCATCCTGGCTCTTGAAAGTTTATGAAGT-AAAGCAAACTG
CCGAAATAGCATTAAC
>Bos_taurus
CCTTTCAATTTTGATAAAAAACTAGAGCT-------ATGCAGAATTATGATATTCAACTCACAGGTCAGACTCTCAACTT
CAGAGTATCTT---ATTAACCATCTTTGGTAATGAAAGG----AAATGTCTTTACTCCTGATGAATGATCAGAGGGTAG-
-ATATC-----CTATCCTGAATGTTTCACATATGAAACTTTTATAATTCACCTCTCTAAAGGGAAATCTTGCAGTTACTC
---TTATTG---TATC---------TTTTAAAATTGAGGTATAGTTGACATAT-AACATTGTATTAGCTTCAGGTGTACA
GCATAATGATTTGATACATTGTGTGTG-TATCATGAAATGATTATCAGAGTAA---TGGTTA--CTATCAGTCAATGACA
TAATAATTACATAATAATTACAGTTATTTTCT---TGTGT-------------TACTGAATCTA---AA-TCTGCTTCTG
AGCACTC-AACTACTAGCTAATCTAAAAGATGAAGAGAATCATAGACTTTTAGATCAGAAAGA-CACTTAGAGACTAC--
--TTAAAATTTTAATCCTCTCC-CTTTACAGATGAAGGAAATAAAGCTGAATTGCCCAAGGTCCCTCAGTTGGAAGTATA
TTAGGAACTTGTACCAATTCTCACCCCAGAAACATTCTCACCTTGCTACACTGGTCTT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------GGATTATTCCTTCTTAAACATCAAAAGGAGCAGAACCAGACTC
TGACTTCAGATGACTAGAATGGCTTTACTATTAAATGTCTCAAGTTATAAGGTTAAGTAGGAGTTCCCATAAATAATGTG
ATTAATAC--TTTTTGTGACCATGTGCTTTGTCTCTTCATAA-TTGGGATGTGA-ACAT----------AGCTAAGGAGA
CCTTGTTC-TTATAAATGCTATGGAACAGCTGCACAGTATCATCCTGACTCTTGAAAGTTTACGAAGT-AAAGCAAACTG
CCGAAATAGCCTTAAC
>Equus_caballus
TTTTGCAGATCTAATGAAAACCTAGGGTTGGTCATCATGCAAAATTATGATATTCAA-TCACAGGACTGTCTCTCAGTTT
CAGAC--TCTC---ATTAGCCATCTTCTGTAATGAAAGA----AAATGTCTTTAATCTTGATGGATGATCAGAAGGATG-
-ATGTCAGCTCATATCCTGACTATTTCACACATGGGACTTTCATAATTCGTCTCTCAAAGAGGAAATCTTGCAGTCACTC
---TTAATG-AATCTT---------TTTTTTAATTGAAGTATAATTGACATAT-AGCATTATATTAGTTTCAAGTGTACA
ACGTGAAGATTTGATATT---TGTATA-TATTGTGAAATGATCACCACAATAAGTGTAGTTA--ACATCAGTCACCA---
-------CACGTATTTA-CAGAAGTTTGTTGTGTATGTGT-------------TATTGAATCTT---AA-TCTGCTTC--
--CTCTC-AACTACTTACTAATCAGAAATGTGAAGAGGATCATAAAGTTTTAGATTAGAAGGA-CTGTTCAAGATTAT--
--ATAATATTCTAATCCTCTCC-TTATACAGATGAAGAAAATGAGGCTGAATTGTCCAAGGTCACTGGGTTGGAGGCATA
TCAGGAACTTTT-CCAATTCTTAGCCCAGAAACACTGTCACCTTCACATGCTGGTCTA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------GAATTATCCCTTCTTAAACATTAAAGGGAGCAAAACCAGCCCC
TGACTTAAAATGGCTAGAATGGCTTTATTATTAAATGTGCCAAGCTATAAGGTTAAGTGGGGGATCATATAAATAATATG
ATTAATAC----TTCGTGACCATGTGCTTTGTCTCTTCATAG-TTGGGATGTGA-ATATAGTTCACAGCAGCTAAGGAGA
CCCTGTTCATTATAAATGCTATGTAACAGCTGCACAGTATCACTCTGGCTTTTGAAAGTTTGTGAAGT-AAA--------
----------------
>Ceratotherium_simum
CTTTTCAGATCTGATGAAAATCTAGGGTTGGTCATCACGTAAAATTATGGTATTCAATTCACAGGACTGCTTCTCAGTTT
CAGACTATCTC---ATTAGCCATCTTCTGTAATGAAAGT----AAATGTCTTTATTCTTGATGGATGATCAGAGGGATG-
-ATATCATCTCATCCCCTGAATATCTCACATACGGGAATTTTATAATTCATCT----AAGAGAATATCTTGCAGTCACTC
---TTATAG-AATATT---------TTTTTTAATTGAGGTATAATTGACATAT-GACATTAAATTAGTTTCAAATGTACA
ACATAATGTTTCAATATT---TGTATA-TATTACGAAATGATCACCACAGTAAGTCTAGTTA--ATATCAATCACCA---
-------TACATAT----AAGATTTTTTGTTTGTGTGTGT-------------TATTGAATCTT---AA-TCTGCTTC--
--CTCTC-AACTATTAACTAATCTGAAATGTGAAGAGGATCATTGATATTTAGATTAGAAGGA-CATTTAGACACTAT--
--ATAATATTCTAATCCTCTCC-TTTTATAGACGAAGAAAATGAGGCTGAATTGCCCAGGGTCACTTGGTTGGAGGCATA
TGAAGAACTTTT-CCAGTTCTCAGCCCAGAAACATTCTCACTTTGACATGCTGGTCTA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------GAATTATCACTTCTTAAACATCAAAGGTAGCACAACCAGCCTC
TGACTTAAAATGACTAGAATGGCTTTATTATTAAATGTCTCAAGCTATAAGGTTAAGTAGGGGTTCACATAAATAATGTG
ATTAATAC----TTTGTGACCATGTGCTTAGTCTCTTCATAG-CTGGGATGTGACACATAGTTCACAGAAGCTAGGGAGA
CCCTGTTCTTTATAAATGCTATGTTACAGCTGCACAGTATCACCCTGGCTTTTGAAAGTTTATGAAGT-AAAGGAAACTA
CCAAAATAGCATTAAC
>Desmodus_rotundus
TTTTTCAGATCTAATGAAAATCTAGGGTTCT---CCATACAAAATTAGGGTACTCAATTCATAAGATTGTCTCTCAGTTT
CAGACTGTTTC---ATTAAATATCGTCAGTAATGAAAGA----ACTTGTCTGTTC--TTGATACATGGTCAGTGGGATG-
-AT---AATCCATATCCTAAATATTTCATAAATGGGACTTTTATAATTCTTTTCTCTAAGGCTAAATCTCGCAGTCATTA
---TTATTG-AATCTT----------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CTTTTTGTTCT---TGTGT-------------TATTGAATCTT---AT-TCTGCTTC--
--CTTTT-ATCTA----CTAACCTGAAATGTGAAGAGGATCATAAAC-TTTAGATTAGAAGGG-CTATTAGAGATTCCTA
TATTAATATTTGAATCATATTC-TTTTACAAATGAAGAAAATGAGGCTGAATTGTCCAAGGCCATTTGGTTGGAGGCATC
TCAGGACTTTTT-CTAGTTTTCAGCTTAGAAACATGTTCATCTTGCTGTGCTGGTCTGGGATTATCCCCTCTTCTTCTTC
TTTTTAAAATTTTTATTGTTATTCAATTACAGTTGTCTGCATTTTCTCCCCATCCCTCCACCCCACCCCATACGAACCCA
CCTCCCATCCCCGCCTCCACCCTCCCCCTTGATTTTGTCCATGTGTCCTTTATAATAGTTCCTGTAATCCCCTCTTCCCA
CTATTCCCTCCCTACTCCCCTCTGGCTATTCTTACATTGTTCTTAACTTCAATGTCTCTGGTTATATTTTGTTTGCTTTT
TTCTTTTGTTGATTATGTTCCAGCTAAAGGTGAGATCATATGGTATTTATCCCTCACCACCTGGCTTATTTCACTTAGCA
TAATGCTCTCCAGTTCCATCCATGCTGTTGCAAAGGGTATAAGCTCCTTCTTTCTCTCTGCAGTGTAGAATTCCATTGTG
TAAATGTACCATAGTTTTTTGATCCACGCAAATGAATGGATTATCCCTTCTTAAACATCAAAGGAAGCACAACCAGCCTT
TGACATAAAATGACCAGAATGGCTTTATTATTAAATGTTTCAAACTATAAGGTTAAGTAGGGATTCACATCAATAATGAG
ATTAATAC--TTTCTGTGACCATGTGCTTTGTATCTTCACAGTTTTTAATGTGA-ACACAGTCCCTGACAGCTAGGGAGA
CCCTGCTCTTTGTAACTGCTGAGTGACAGCTGTTCAGCATCATCCTGCCTCTTGAAAGTTCATGCAGT-GGAGCAAACTG
CCGAAATAGCATTAAC
>Rousettus_aegyptiacus
TTTTTCATGTCTAATGAAAATCCTGTGTTCTTTATCATGCAAAATTATGATATTTAATTCACAGGATTGTCTCTCAGTTT
CAGACT-TCTC---ATTAACCATCATCGGTAATAAAAGA----AAATGTCTATTC--TTGATGGATGATTAGAGGGATG-
-ATATCAGTCCATATCCTGAATATTTTATACATGCAACTTGTATAATTCATCTTTCTAAGTGAAAACCTTGCA----TTC
---TTACTG-AATTTT-------TTTTTTTAAATCGAGGTATAATTGACATCG-AACAT---ATTAGTTTCAGATGTACA
ACGTAATGGTTCGATATT---TGCATATTATCATGGAATGATCGCTACAATAAGTCTATTTA--ACACCAGCCACCA---
-------TATATA-----GACATTTTTATTCT---TGCGT-------------TGTTGAATCTT---AA-TTGGCTTC--
--CTCTT-ACCTACTTATTTA-----AATGTGAAGAGGATCATAGACTTTGAGATCAGAAGAA-CCCTTAGAGGCTGT--
--ATACTGTTTGAATTGCATCC-TTTTATAGAAGAAGCAAATGAGGCTGAATTGCCCAAGGTCACTTGGTTGGAGGCACA
TCAGGAACTTTT-CCAGTT-TCAGCCTAGAAACATTTTCACCTTGCCATGCTGGGCTG----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------GAATTGTTCTTTCTTAAACATCAAAGGGAGCACAAACCACCTC
TGACTTGAAATGACTAGAATGGCTTTATTATTAAATGTTTCAAGCTGTAAGGTTAAGTAGGGGTTCACATAAATAATGTG
ATTAATAC--TTGTTGTGACCACGTGCTTTGTATCTTCATAA-TTGGAATGTGA-ACACAGTTCATAATGGCCTAGCAGA
CCCTGCTCTTTATAAACGCTATGCAACAGCTGCACAGTATCACCCTGGCTCTTGAAAGTTTATGAAATAAAAGCAAACTA
CCGAAATAGCATTCAC
>Canis_familiaris
TTTTTCAGATCTAATGAAAATCCAGGGTTGGTCATCATGCCAAATTATGATATTCAATTCACAGGACTGTCTCTCAACCT
CAGGCTATCTC---ATTAACCAGCTTCAGTCATGAAAGA----AAATGTCTTTATTCTTGATGGATGATCAGAGGCATA-
-ATACCAGCCTACATCCTGAATATTTCACACATGGGACTTTTATCATTTGTCTCTCTAAGGGAAAATATTATAATCATTC
---TTAT-GAAATCCT----------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------AACTATACTTC--
--CTCTCTACCTACTCACTAATCTGAAAGGTGAAGAGTATCATAGAATTTTGCTTTGGAAGGATTCTTTAGAGATCAT--
--CTAAAATTTGAATCCCTTTCTTTTTATAGATGAAGAAAATGAGGCTGAATTGTCCAAATTCACTCACTGGGAGGCATA
TCAAGAACTCGTACCAAGTC-----------------TCACCTTGCCATGCTGGTCTA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------GGATTATCCCTTCTGAAACATCAAAGGGGGCACAACCACCCTC
TGACTTAAAATAACTAGAATGGCT---TTATTAAATGTTTCAAGCTGTAAGGTTAAGTAGGGGTTCGTATAAATAATGTG
GTTAGTAC-TCTTTTGTGACCATGTTCTTTGTCTCTTGGTAC-TTGGGGTGTGA-ACATTGTTCACAGCAACGAGGGAGA
CCCTGTTCTTTATAAACGCTATGCAACAGCTGCACAGTATCAGTCTGGCTCTTGAAAGTTTATGAAGT-AAAGCAAACTA
CTGAAATAGCATTAGC
>Felis_catus
TTCTTTAGATCTAATGAAAATCCAGGGTTGGTCATCATGTCAAATTATAATATTCAATTCACAGGACTGTCTCTCAACCT
CAGACTATCTC---ATTAATCATCTTCAGTCATGAAAGA----AAATGTTTTCATTCTTGATGGATGATCATAAGGATA-
-ATACCAGGCCACATCCTGAATATTTCACGCATGGGACTTCTACAATTTGTTTCCCTAAGG-------------TCATTC
---TTAT-GAAGTCTT----------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------AACTATACTTT--
--CTCTCTACCTACTAACTAATCTGAAAGGTGAAGAGAATCATAGATTTTTAGATTAGGAT---TCTTTAGAGATTAT--
--CTAAAATCTGAATCCTCTTC-TGTTACAGATGAAGAAAATGAGGCTGAATTGCCCAAGTTCACTCACTGGGAGGCA--
----GGAATTGTACTAATTCTCAGTCCAG------TGTCACCTTGCCATGCTGGTG------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------ACATGCATGTCCCTTAATTATCGAAG-------------CCTC
TGACTTAAAATGACTAGGATGGCTTCATTATTAAATGTTTTGAGCTGTAAGGTTAAGTAGGGGTTCACATAAATAATATG
GTTAATAC-TTTTTTGTGACCATGTGCTTTCTCTCTTCAGAA-TTGGGATATGC-ACGTTATTCACAGCAGCTAAGGAGA
CCCTGTTCTTTATAAAGGCTATGCAGCAGCTGCATGGTATCACTCTGGCTCTTAAAAGTTTATGAAGT-AAAGCAAACTA
CTGAAATAGCATTAAC
>Manis_pentadactyla
TTTTTCATATCTAATAAAAATCTAGGGTTGGTTAGCACACAAAATTATGATATTCAATTCACAGGAC----TCTCGAT--
-GAACTGTCTCTAAATTAACCAGTTTCAGTAATGAAAGAAAATAAATGTCTTTATTCTTGATGGATGATTAGAGGGATG-
-ACATCAGCCCATGTCCTGAATATTTCAGACATGGGGCTTTCATAGTTTGTCTCTTTCAGGGAAAATCTTGCAATTACTC
---CCAA-GGAACCTT----------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------AA-TCTGCTTC--
--TTCTC-ACCTACTAACTAATCTG-----TAAAGAGGATTAGAGACTTTAGGATTGCAAGGA-CTCTTGGAGACAAT--
--CTAAAATAGAAATCCTCTGCCTTCTATAGATGAAGAAAATGAGACTGAATTGCTCAAGTTCACTTGGTGGGGGGCATA
TCAGGAACTTCTACAAATTCTCAGCCCAGAAATATTCTCACCTTACCATGCTGGCCTG----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------AGATTACCCCTTCTTAAACATCAAAGGGAACATAACCCGCCTC
TGACTTAAAATGGCTAGAATGGTT---TTATTAAATGTTTCAAGCTATAAGGTTAAGTAGGAGTTCACATAAATAATGTG
ATTAATAA--TTTTTGTGACCGTGTGCTTTGTCTGTTTGTAA-TTGGGATGCAA-ACATAGTTCATAGCAGT---GGAGA
TCCTGTTCTTTATAAACGCTGGGAAACAGCTGCACAGTATCACTCTGGCTCTTGAAAGTTTATGAAGT-GAAGCAAACTA
CCAAAATAGCATTAAC
>Condylura_cristata
CTTTTCTGATCTAATGAAAATCTAGTGTTGGTCATTATGCAAAATTGTGATATTTAATTCATAGGGCTATCTCTCAGTTT
CAAACTATCTC---ATCAATCATCTACAGTAATTAAATA----AAATGTCTTAAT--TTGATGGATAGTCAGAAGGATGT
GATTTCGACTCATATTCTGAATACTTTATACATGGGATTTTTA--ATTTGTCT-----AAGGAAAATCTTGCAGTTA-TT
---TTATTG-AAGCTT----------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------AA-TCTGCTTC--
--ATTTC-AATTG-TAAGTAATATGGAAGCTGACGAGCATTACAGAC-TTCAGAATAGAAGGA-TACTTAAAG-------
-------------TTCCTACCC-TTTTATAGACGAAGAAAATGAGGCTAACTTGCCCAAGGTCACTCACTTGGAGGCATA
TCAGAAATTTGTACGAATTCTCAGTTCAGAAAGATTCTCGTCTTGCCATGTTGGTCTG----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------GGATCATCCCTTCTTAAACATCAAAGGGAGTACAACCAGTCTC
TGACTTAATAGGACTAGAATGACTTTATTATTAAATGGTCCAAACTATAAGGTTAAGTAGGAGTTC--ATAAATAATGTG
ATTAATAC--TTTTTGTGTCCATGTGCTTTGTCTCTGCATAA-TTG-GATGTGA-ACACAGTTTGCAGTGGCT---GAGA
CCCTGTTCTTTGTAAATGCTACGCAACAGCTGTCCACTGTTACCCTGATTCTTGAAAGTTTATGTAGT-AAAGCAAACTA
CCAAAATAGCATTAAC
>Uropsilus_gracilis
CTTTTCTGATCTAATGAAAGTCTAGTGTTAGTCATTAAGTAAAACTGTGCCATTTAATTCTTAGAACTGCCTCTCAATTT
CAAACTAGCTC---ATTAATCACTTACAGTATTGAAATA----AAATGTCTTTAT-GTTGATGGATGATTGGAGGGATG-
-ACATCAACCCAGATTCTCAATATTTCACATATGGGATTTTTA--ATTTGTCTG----AGGGAAAAACATGCAGTTA-TT
---TTAATG-AATCTT----------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------AA--ATGATTT--
--ATCTC-AACTG-----TAATCTGAAAGGTGATGAACATCATAAACTTTTAGACTAGCAGGA-CCATTATAGGTTAT--
--ATAATATTCTATTCCCATGC-TTTTATCAATGAAAAAAATGAGG----------CAAGTTCACTTCATCGGAAGCATA
TCAGGAACTTTTACCAATTCTCAGCCCAGAAAGATTCTCACCATGTCATGTTGGACTG----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------GGGTTATCTCTTCTTAAACATCAAAGGGAGTACAACCAATCTT
TGACTTAGGAAGACTAGAATGACTTTATAATTAAATGTTTCAAGCTATAAGGTTAAGTAGTAGTTCCTATAAATAATGTG
ATTATTAC--TTTTTGTGTCCATGTGCTTTGTCTCTGCATAA-TTG-GATGTGA-ACATGGTTCACAACGGCT---CAGA
CCCTGTTCTTTGTAAATGTTATGCAACAGCTGTACAGGATCACCCTGACTCTTGAAAGTTTATAAAGT--AAGCAAACTA
CCAAAATAGCATTAAC
>Galeopterus_variegatus
TTTTTCACATCTGATAAAAACCTAGGGTTGCTCGCCATGCAAAATTATGATATTCAATTCACAGCATTGGG--TCAATTT
CAGGCTATCTC---ATTATCCATTTTTAGTAATGAAAGA------ATGTCTTTATTCTTGATGGCTGAGCAGAGGGATG-
-ACATTAACCCATATCCTGAATATTTCACACATGGGACTTTTATAATTTGTCTCT--AAAGAAAAACCTTGCAGTCTGTC
---CTATT--AATCTT----------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------AA-TCTGTTTC--
--TTTTC-AACTA---ACTAA-CTGAAAGGCAAAAAGGATCACAGACTTTTAGATAGGGAGGG-CCTTTACAGACAAT--
--CTAA------------ATCC-TTTTATAGATGAAGAAAATGAGGTTGA-TTTCTTAAGGCCACTCACTTGGAGGCATA
TAAGGATCTTGTACCAATTCTCAGCCCAGTGATATTCCCA----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------TTCTTAAACATCAACAGGAGCAAAAACAGCCTC
TGACTTAA-ATGACTACAAGGGTTTTATTATTAAATATTTCAGGCTATAAGATTAAGTAGGGATTCACACAAATAATGTA
AGTAATAA--TATTTGTGATCATGTGTTTTGTCTCTTCATAA-TTGGGATGTGA-GCATAGTTCATAGCAGCTAAGAAGA
CCCTGTTCTTTATAAATGCTATGC-ACAGCTGCACAGTATCACCCTGGCTCTTGAAAGTTTATGAAGT-AAAGCAAACTA
CCAAAATAGCATTAAC



Horse21_LTR

>ERV3-5-EC_LTR
---------------------------------------------------------------TGTTGGAGGAGGTCATC
AAGAGGACGTGACCATGACCACCGGTTGACCCGCGAGCTGGACCC-GGGCAATCGGAGGCTCCTCACCCCCTCC--TGTC
CTTGGAATGTACGTTCCACCCGCCTTTCCNCTCCCAGAAGCCGCTTCAAGGATACAGCCTTGAGAGAGTAATGTGTTGTT
GAGACCATCTGGACTGNGTACGTGACTGAACCCAGTTAAGGCCTCTATATAAACT-----TTTAAGATTCTGGCGGGCGG
GTGCGGAGATCTACTCATCTTGCGGCCGCCCAAGACAAGCCTCGTAAGTAAGTTCCCTTGCTTATTAAACCTGCCACCTA
CCAATCTGGAGTGGTCTGCCTCTTTCTTCGGTCTCTCCTTGCCCTCCGTGTACGGGGGCCAGTTTCAGATTTCACCCGGG
AAGCTCCCGAGGTTGCGAACCAACA-------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------
>Canis_familiaris
GTATTTTTGAGATATATTAGGAAAGTTTTGT-AAATATTAGTCACAT-GGGG---GAGGG---TACTGGATGAGGTCATC
GAGAGAATCTGACCA------CCAGTTGACCAACAAGCTGGA-CCTGGATAATTGGAAATTCTTCAACCTTTCCCTTGTC
CTTGAAATGTGAGTTCCACTTACCTCCCCTATGCTAGAAGCTTCCCCAAGGGTACAACTTTGAGATAGAAATGTGTTGCT
GAGACCATCTGGACAGTATATGTAACTAAACCTAGTTAAGGCCTCT-TATAAACT-----TTAGAGATTCTGATGGGCAG
GTGCAGAGTTCTACTTATCTTGCAACTGCCCAAGACAAACCTCATATGTAAGTTGCCTTGCTTCTTAAGCCCACCACCTA
CCAATCTGGAGTGGTATGCCTCTTTCTTTGAGTTCTCCCTGAGCTCTGTATATGGAGACCTATTTCACATTTCACCTGGG
AAGCTCCTGAGGTGGCAAACCAAAA---GGTGG---GTGGCAGTGGAATATTAAAAATGGGAAGCAGAGGGGATTCCCAG
GTGGCTCAGCAGTTTGGCACCTGCCTTCGGCCCAGGGCGTGATCCCGGGGCCCTGGGATCGAGTCCCACATCAGGCCCCC
TGCATGGAGTCTGCTTCTCCCTCTGCCTCTCTCTATCTCTCAAGAATAAATGAATAAAATCTTTTTAAAAAATAGGAAGC
AG-AAAGAACATTCTGGTCAGA
>Felis_catus
GTATTTTTGAGATACATCAAGAAAGCTTGGT--AATTCTAGTCACATAGAGA---GATGG---TAATGTAGGAGGTCATC
ATGAGAACATGGCCA------CCTGTTGACCCCTGAGCCGGGCCCTGGGCAGTTGGAAGCTCCTCAGCCCCTCACCTGTT
GTTGGAATGTGCATTCCACTTACCTTCCTAATGCTAGAAGCTTCCCCAAGGGTACAGCTTTGAGATAGTAATGTGTTGCT
GAGACCATCTGTACAGTATATGTGACTGAACCCAGTTAATGCCTCT-TATAAACCTTTTTTTAAAGATTCTGGTGGGCAG
GTGCAGAGATCTACTCATCTTGCAGCTGCTCAAGACAAGCCTGAAATGTAAGTTACCTTGTTTATTACATCTACCACCTA
CCAGTCTGGAGTGACCTGC--CTTTCTTCAGGCTCTCCCTGACCTCTGTAT-CTGAGGCCGATTTCACATTTTACCTGGG
AAGCTCCTGATGTGGCAAACCAATG---GATGG---GTGGGAATGGGGTGTTAAAAATG---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------GGAAGC
AG-AAAGAACATTCTGCTCAGA
>Manis_pentadactyla
GTATTTTTGAGATACATTAGGAAAGCTCGGT-AAATTTTGGTCATGTAGAGA---GATGG---CATTGGAGGAGGTCATT
AAGTTGATGTGACCA------GTGATTGACCCACAAGTGGGA-CCTGGGCAATGGGAG----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------
>Equus_caballus
GTATTTTTGAGATACGTAAGGAAAGCTTGGT-AAGCTTTGGTCCTGTGGAAA---GATGG---TGTTGGAGGAGGTCATC
GAGAGGATGTGACCA------CTGTTTAACCCACTTGCTGGA-CCTGGGCAATTGGAGGCTTCTCGCCCCCTTCCTTATT
TTTGGAATGTGCATCCTGCTTGCTTTCTCCATGATAGAAGCTGCCCAAAAGAAACAGCTTTGAGATAGTATCGTGTTGTT
GAGACCATCCAGATAGTATACGTGACTGAACCCAGGTAAAGCCTCT-TATAAACT-----TTTCAGATTCTGGTGGATGG
GTGTGGAGATCTATTCATCTTGCAGCCGCTCAAGACAAGCCTTGTATAT--GTTCCCTTGCTTGTTAAACCTGCTACCTA
CCAATCTGGAGTGGTCTGCCTCTTTCTTTGGTCTCTTCCTGCCCTCTGTGAATGGGGGCCCCTTTCAGATTTCACCTGGG
AAGCTCCTGAGGTTGCAGACCAACA---GATGG---GTGGGAAGGGGATGTTAAAAATG---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------AGAAGC
AG-AAAGGACACTCTGGTCAGA
>Ceratotherium_simum
GTAGTTTTGAGATAGATCAGGAAAGCTTGGT-AAGCTTTGGTCATGTAGGAA---GATGG---TATTGGAGGAGGTCATC
GAGAGGATGTGACCA------CTGTTTGACCTACTGGCTGGA-CCTGGGCAATTGGAGGCTTCTTGCCCGCTTCCTTGTC
CTTGGAATGTGCATCCTGCTTGCCTTCTCTGTGCTAGAAACTGCCCCAAGGAAGCAGCCTTGAGATAGTAATGTGTTGTT
GAGACCATCTGGACAATATACGTGACTAAACCC-GGTAAGACCTCTATGTAAACT-----TTTAAGATTCTGGCAGGTGG
GTGCGGAGATCTGCTCATGTTGCAGCTGCTCAGGACAAGCCTCGTATGTAACTTCCCTTGCTTATTAAACCTGCCACTTA
CCAATCTGGAGTGGTCTGCCTCTTTCTTTGGTCTCTCCCTGCCCTCTGTGAATGGGGGCTGGTTTTAGATTTCACCGGGG
AAGCTCCTGAGATTGCAGACCAACA---GATGG---CTGGGAGTGGGATGTTAAAAATG---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------GGAAGC
AG-AAAGAACATTCTGGTCAGA
>Sus_scrofa
ATATTTTCAAAATACATCAGAAAAGCTGGGGAAAACTTGGGTCATAGAAAGG----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------GATGG---GCGGGCAT-GGATGTTAAAAATG---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------GGAAGC
AG-AAAGACTAATCTTGTCAGA
>Bos_taurus
AACTTATTGAGATACATTAGGAAAGCTTGA--AAACTGTGGTCATATAGAGG----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------GATGG---GTCAGCATGGGATGTTAATGATG---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------GGAAGC
AG-AAAGAGCAATCCAGTCAGA
>Myotis_myotis
GTATTTT-GAGATATATCAGGAAAGCTTAGT-AAGCTTTGGCCAGAGAGAGG----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------GATGT---ACAGGAATGCGATGGTAAAAATG---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------GGAAGC
AG-AAGGAGCATTCTGGTCAGA
>Rousettus_aegyptiacus
ATATTTTTGAGATGTATCAGGGAAGCTTGCT-AAGCTTTGGTCATGAAAAAG----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------GATGG---GTAGCACTGGGACTTTAAAAATG---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------GGAAGC
AG-ATAGAACCTTCAGGTCAGC
>Condylura_cristata
GCATTTGTGAGTCACATCAGAAAAGCTTGGT-AAGTTTTGATCACAGTGAAG----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------AATGG---GTAGAAATGAGACGTTAAAAATG---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------GCAAAA
AG-AAAGAACGCTTTGATCAGA
>Erinaceus_europaeus
NNNNNNNNTGTATACAATAGGAAGACTTGGT-AAACTTTTGTCATGTAGAGC----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------AGTGA---CTAGAATTGAGATGTTAACATTG---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------GGAACA
TT-TTAGAATATTCTGGGCAAA
>Homo_sapiens
GTATTTTTAG-----ATCTGGAAAGCTTGGTAAAGCATTGCTCATGTAGACG----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------GATGG---GTGGGAATGGGATGTTAACAAGG---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------GGAAGC
AGTAAAAAATATTCCAGTCACA



Horse22_LTR

>ERV1-4N-EC_LTR
--------------------------------------------------------------------------------
--------------------TGAAGGGGTTCAGAACAGGCCTCCCCAAGATGTGCCACTTTGGCATGTGGAATATTTTGA
GCTAAAGGCAATCNAGACCCTGTGGGCTCAAGAGAAACTTT-TACCTCTCCCTT---------AAAGAATTTAAATTGGG
GGCCTTGCCCATAATAAGAGTTATTACCAGAAATAAATTTTT--------ATGACCTATCTGTATGGCAGGGCAAACCTC
TAATTACTGAACATCTGCTCTTCTTATCATCCTGTGAATTACCCTCCTCCCCTCTGAAGCCTCAGGCCCCTATCCCATTC
CTTAGCTCAAGATGGCATATATACCTCATTTTACCTTTTTGTCTCTGAACCTCTCATGTATGTGGGGTCTCTGACTCTCT
CATGTATGTGGGGTTCCCGTATNTATGNAATTAAATTTGATTTTCTCCTGTTAATCTGTCTCAT----------------
-----------GTCAATTTAATTCTTAGACCAGCCAGAAGAACCTAGAAGGGTAGAGGAAAAT---TTCTTCCTCCCCCA
CA------------------------------------------------------------------
>Equus_caballus
GAGGTGAGTGGTACAGTCCAGGAGATTGGTTGGGAGAAGTAAAGCGGACACTA------GCAGTTATCTAGAAAATCAGG
TCTGAGGAGA---GTGC---CGAAGGGGAGCAGAAGATGCCACTCCAAAATATGCCTCTTTGGCATAAAGATTATTTTGA
GCAGAAAGCAATCAAGACCCAG-AGACTCAGGAAAAGCTTTCTTCTTCCCAATTAACTGCCTAAAAGAGTGTGGAAAGAG
GTCCTGCACCAGGAAGAGAGCTA-TACCGGAGATGACTTTCT-CACCCGAGAGACTTCTCTGTATGGCAGGGAAAACATT
TGCTCACCAAACATTTTCTCTTCTCCTCTCCCTGTGAATTGTCTTCCTCCCTTTTGAAGCCCCAGACCTTTATCCCTTTC
CTTAGCTCAGGATGGTGTATAAGCCTCA-AGTGCCTGGCTGCCTTTGAA--------------------------TCTCA
TATTTTTACGGGGCTCCCATACATATGAAACTAAATTTTTTTTTCTCTTGTTAATCCTTTTATT----------------
-------------ACAGGAGGATCTCAGGC-------AAAGACCTAGAAGGGTAGAGAGAAAACTATTTTTCTTCCCCTA
CA---GTAC---ATTGATCTT-AGTCCA---AACTAGTGAAAGACTCCTAGAT-----AAGAAAAACG
>Ceratotherium_simum
GAGGTGAGTGGTACAGATCAGGAGATTGGTTGGGAGAAGTGAAGTGGGCAATA------GCAGTTATCTAGAAAATCAAG
TCTGAGGAGA---GTAC---TGAAGCAGAGCAGAATATACCACCCCAAAATATGCCTCTTTGGTGTAAGGATTATTTTGA
GCAGAAGGCATTCAAGACCCAGCAGACTCAGAAAAATCTTTCTTCCTCCCCCTGAACTTCCCAAAAGA-TGTAGAAAGAG
GTCCTGTAGCAGCAAGAGAGCTACCACCAGGGATAACTTTTT-CATCTGAGAGACTTATCTGCATAGCAGGGCAAATGTT
TGTTTACCAAACATTTGCTCTTCTTCTCTTCCTGTGAATTGTCCTCCTCCCCTTTGAAGCCCCAGACCCCTATCCCTTTC
CTTAGCTCAGGATGGTATATAAGCTTCC-ATTGCCTGGCTGCCTTTGAG--------------------------TCTCC
TATTTTTATG---CTCCCATATGTATGAAATTAAATTTGTTTTTCTCCTGTTACCCTTTTTTGT----------------
----------------------------------------------GTGTGTGAGAGGAAGA----TTGGCCCTGAGCTA
AN---NNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>Myotis_myotis
GAGGTGAATCACACAGTCCAGG----TGACTGGGAAAACTTAAGTGGGCAATA------GGAATTACCTAGAAAATCAGG
---------------------------AAGCAAAACATGTCACCCCAAAATAAGCCTCTTTGGCATAATGATTATTTTGA
GCTGAAGGCAATCAAGG-CCAGCAGATTCAGGAAAAGCTTTTTACCTCCCCCTTAACTGCCTAAAAGAATTTAGA---GG
GTCCTGCAG-AGGAAGAGAGCTACTACCAGAGATAACCTTTTATATC----AGATTTATCTGAATGGCAGGGAAAACACT
GGCTTACCAAATATTTACTATTCTCATCTTCCTATGAATTGTCTTCCTCCTTTTTGAAG-CTCAGACCCCCATTCTTTTC
CTTAGCTCAAGAACAT-TATAAACTTCA-ATTGCCTAACTACCTTGGAG--------------------------TCTTA
TATTTTTATGGAGCTCCTGTATGTATAAAATTA-----TCATTTTTCTTGTTAATCTGTCTTTTCATT------------
----ATGGTGGGAGGGGGTGGGTCTCAGCC-------AAGAACCTAGAAGGGTAGAGGGAAAATTATTTTTCTTCTCCTA
CA---GCAC---ATTGATCTC-AGTCCA---TCCCAGTGAAAGACTCCCAGAC-----CAGA-AAACA
>Rousettus_aegyptiacus
GAGGTGAATCATACAGTTCAGA----TGACTGAGAGAGGTCAAGTGAGTAATA------GTAGTTATCTAGAAATTCAAG
TCTGAGGAGG---GTAC---CGAAGGGGAATATAATATGTCACCTCAAAATTTGCCACTTTGGCATAAGGATTATTGTGA
GCCAAAGGCAATCAAGA----GCAGATTTAGGAAAAACTTTTGACCTCCCTCTCAACTTCCTAAATGAATTTAGAAATGG
ACCTTGTACCAGAAAGAGAGCTACTGCCAGAGGAAAGTTTCT-CATCCAAGAGACTTAGCTGCATGGTTAAGCAAATATT
TGTTTACCAAACATTTGCTCTTC---TCTTCCCATGAATTGTCTTCCTCCCCTTTGAAGCCCCAGACCCCTGCTCCTTTT
CTTAGCCCAGGGTGGTATATAAGCCTCA-ATTGCTTGGTTGCTTTTGAG--------------------------TCTCA
TATTT-TATGGGACTCCTGTATGTATGAAACTAA-------TTTTTTTTGTTAATCATTTTTTTTTTTTTTTTTAAAATA
TTACAGTGTATAGAGGTGGGGGTCTCAACC-------AAAAATCTGTAAGGGTAGAGAGAAAATTATTTTTGTTCCCCTA
TA---GTAC---ATTGATCTT-AGTCCA---TCCTAGTAAAGGACTCCCAGATAAAAAAAAAAAAACA
>Canis_familiaris
GAGGTTGATGTCG--------------------------------GCGCAATA------AGAGTTATCTAGAAAAACAGG
TCTGGAAAGA----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----GTCC---ACTGATC--------------CCAAAGAAGGACTCCCAGAA-----AAGAAAAACA
>Felis_catus
GAGGTTGATG---------------------------------GTGAACAATA------TCAGTTACCTAGAAAAACAGG
TCTGGAGAGA----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----GTCC---ACTGATCTT-ACTCCC---TTCCAGTGAAGGACTCCCAGAA-----AAGAAAAACA
>Manis_javanica
GAGGTTAATGGTGTAGTTCAGGTGATTGGCTGGG-GAAGTGAAGCAGGCAATACTGCTGGCAGCTATCTAGAAAAACAGC
TCTGGGGAGA----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----GTCC---GCTGAGCTTAACTCCC---TCCCAGTGAAGGACTTCCAGAT-----AAGACAAACA
>Vicugna_pacos
GCGGTTAGTGGTGTAGTCCAGGTGGTGGGGTGGGAAGAGTGAAGTGGGCCATA------GCAGCCGTCTAGAAAAGCAGG
TCTGGG-AGA----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------CA---ACTAATCTT-ACTCCC---TCCCAGTGAAGGACTCCCAGTT-----AAGAAAAACC
>Bos_taurus
GAGGTTAGTGATT--ATCCAGGTGATTGGCC---AGTAGTGATCTGGACA---------ACAGCCATCTAGAAAAACAGG
GCTT--GAGA----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----GTCC---ACTGACCTT-CCTCCCTCTTCCCAGTGAAGGACTCCCAGAT-----AAGAAAAACA
>Condylura_cristata
GGGAT---------------------TGGTTGGGAGATGGAAAGTGATCAATA------ATAACTCT---GAAAATTAAG
ATCAAGGAGA----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----GATT---GCTAATCTTAACACCC----CTTAATGAAGGCCTTCCAGGT-----AAGAAAAATA
>Solenodon_paradoxus
GAGCT---------------------TGCTTAGGAAAAACATAGTGGGCAGCA------GCAGCTCTTGAGAAAATCAG-
TCTTGGTAGA----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----GGTT---AGTGATCAT----------------------CTTCCTAAAT-----TAGA-AAATA
>Homo_sapiens
GGGGTTAGTG-----------------------GAGCAGTGAAGTGGGAAATG------GTAGCTATCTAGAAAGTTGGG
TCTGGGGAGA----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----GTCC---ACTGATCTT-ACTTCC---TCCCTGTTAAGGA-TCCCAGAT-----AAGAAAGACA



Horse23_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
-------TTTTTCCAGCTTTA--TTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTT
TTGATATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTC----------------
-----------------------------------------------------
>Sus_scrofa
TTCTTTCATGATAAATTCTTCACTGTTT------TATAGTCATTTATATTCATGACAGAT----TTTTAA---GAGTCTT
---TTTT----------------TGAGATTATAATTGGCAAATA---------CTAGTTTCAGGTGTACAACATAACGAT
TCAATATTTGTGTGTATTGTGGAATGATCACTACAATAAGTCTAGTCAACACC--------------CAATCTT---ATA
TCAGGAAC-----TCAAGTGAACGAGGTTGGGCTTTAAGGAAAGAAACATCAA
>Tursiops_truncatus
TTC---------------TTCACTGTAT------TATAGTCATTTATATTCATGACGAAT----TTTCAA---CAGTCTT
---TTTATTTTT-----------TTGAGATATAATTGACATATAA-TACTTTATTCGTTTCAGGTGTACAACATAATGAT
TCAATATTTGTATATTTTATGGAAAGATCACCACAATAAGTCTAGCTAACACC--------------CAATCTT---ATA
TCAGGAGC-----TTAATTATATGAGGTTGGACTCTGGGGAAAGAAACATCAA
>Equus_caballus
TTCTTTTATGACAGATTCTTCATTGTAC------TATAGTCATTTACATTCATGGCAGGC----ATTTAA---CAGTCTT
---TTTACTTATTTATTTTTTAATAGAGATATAGTTGATATATAA-AATTATATTAGTTTCAGGTATACAACATAATGAT
TCGATATTTGTATATATTGTGAAATGATCACCACAATAAGTCTAGTCAACATC--------------CAATATT---GTA
TCAGGAAT-----TGAATAGTATGAGGTTAGGCTCT-GAGACAGAAATATCAA
>Ceratotherium_simum
TTCTTTTATGACACATTCTTCATTGTAT------TATAGTCAT-TATATTCATGATAGAC----TTTTAA---CAATCTT
---TTAATTTCT----TTTTAAGTTGGAATATAATTGACATATAA-CATTATATTAGTTTCCGGTATACAACATGAAGAT
TCAATATTTGTATCTATTGTGAAATGATCATCACTGTATGTCCAGTTAGCATC--------------CAACGCT---ATA
TCAGGAAT-----TGAATTGTGTGAGGTTGGGCTCT-GAGAAAGAAACATCAA
>Canis_familiaris
TTCTTTTATGACACACTTTCGGTCGCAT------TATAGTCATTTATACTCCTAACAGAC----TGTTAA---CA-TCTC
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------ATA
TCGAGAAT-----TGAGTTGTGTGAGGTCGCATTCT-GGGAAAGAAACATCAA
>Felis_catus
TTCTTCTATGACACGTTTTTCGTTGTGTTACATATATAGCCATTTATACTCAGG--AAGC----ACTTAA---CA-TCCT
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------GTA
TCAAGAAT-----TGAATTGTATGAGGTTGCTCTCT-GGGAAAGAAGCATCGA
>Manis_pentadactyla
TTCTTTTATGACACA---TTCATTGTGT------TATAATAATTTATATTCATGGCAGAC----TTTTAG---CAGTCCT
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------GTG
TCAGGAAC-----TGAGTT-TAAGAGGTTAGGCTCT-GGGAAAGAAACATCCA
>Myotis_myotis
TTCTTTTAGGACTCATTCTTCATTGTAT------TATAGTCATTTATACTCACCCCAGGC----TGTTAA---CAATTTT
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------GCA
TGAGGAAC-----TGAATTGTGTGGGACTAAGCTCT-GGGGAAGAAACATCAA
>Rousettus_aegyptiacus
TTCTTTTATGATACATTCTTCATTGTGA------TATAGTCATTTGTACTCATGACAGAC----TTTTAG---CAATCTT
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------GTA
TCAGGAAA-----TGAATGGTATGAAGTTCAGCTCT-GGGAAAGAA----CAA
>Crocidura_indochinensis
GTATTTTATGACACATTTGTGATTGTAT------TATACTGCATTGCATTCATGAGAGACTTTTTTTTAC---CAATCTT
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------ATA
TTAGGTAT-----TGAATTGTACAAGTTTGGGCTCTAGGGGAAAAATTGACAA
>Sorex_araneus
NNNNNNNAAGACCCATGTATTATTGTGT------TACTGTACTTTGCATTCATGAGAGAC----TTCTAA---CAATCTT
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------GGA
TCAGGAATTGAACTGAATTGTATGAGGTTGGGCTCTAGGGGAAAGA--ATCGA
>Homo_sapiens
TTTTCTTGTGACACATT-TTTATTGTAT------TAAAGTTACTTATATTTATGACAAGC----TTTCCA---TAATTAT
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------GCA
TCAGGAAT-----TGCACTGCATGAGGTTAGGCTCT-GAAGAAGAAACATCAA



Horse24_LINE

>L1MA9
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------TTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTG
TACAACGTGATGTTTTG-ATATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCA
CATAGTTACCA--TTTTTTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAAATTTCAAGTATACAATACAGT
ATTATTAACTATAGTCACCATGCTGTA----CATTAGATCTCCAGAACTTATTCATCCTGCATAACTGAAACTTTGTAC-
--------------------------------------------------------------------------
>Sus_scrofa
ACAATCTATCATCATG--TTAAATGGCAATATGTT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TTAAAT
TAAAGATGTTT---AAAGTACACGTCT-----TTTTACTGG-----AACTGACA---CAACATCATACTGATTTCAGGTG
TACAACATAATGATTTGAATATTTGCATATATTACAAAATGGTCACCACGATAAGTTCACTTA--ATTTCCATCTCCATA
CCTAGTTATGT--ATTTTTTTATTTTGATGGAAAC--TTAAGATTCACTCTCCTGGCCACGTTCAAATATGCAATAGAGT
ATTATTACATT--------------------CATTACATTCCCATGA--TGTTCACTTT--ATAACTAGAAATTTGTAC-
--AATG--------TATGTCT---TGATGCCGCAAGTTCAAATCTTCACATAAATCCTTTAGTAAAACAGATTC
>Bos_taurus
ACAATCTGTCATTCTGAATTAAAAGACAACATGTT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------CTTAAT
TGAAAATGTTT---AATGTACACATCT------TTTACTGAGGTATAACTGACA---TAATATCATATTGCCTTTAGGTA
TACAACATAACAATTTGAATATTTGTATATATTGCAAAATTGTCACCACAGTAAGTCCAGTTA--ATATCCAT-ACCATA
ACTAGTTACAA--TGTTTTTTCTTTTGATGAAAGCTTTCAAGATGCACTTTC-------------AATATGCAATGCAGT
ATTATTAACTAGAATCACAGTGTTGTATGTACATTACATCC---------ATTCATTTT--ATAACTGGAAATTTTTAC-
--AATGTATTAATACATGTCT---TGATGCCTCTAATTCAAATTCACATATTAACCCTTGAGTGAAACATATTT
>Equus_caballus
ACCATCTACCATTCTGAATCAAAAGGCAGTATGTT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TCTAAT
TAAAGATATTT---AATGTACA--TCT---TTTTTTATTGAGGTATAATTGACA---TGACATTATACTAGTTTCAGTTG
TACAATATAATGACTTG-ATATTTGTCTATATTGCAAAACGATCATCACAATAAGTCCAGTTA--ATGTCCATCACCATG
CACAGTTACAA---TTTTTTTCTTGTGACGAGAACTTTCAAGATCCACTTTCCCAGCTACTTTCAAATGTGCAATACAGT
ATTATCAACTATAGTCACCATGCTCTA----CATGACATTTCTATGATTCATTCATTTT--ATAACTGGAAATTTGTAC-
--AATG------TACATGTCT---TGATGCCTCTAATTAAAATTCTCATATAAATCCTTCAGTAAAATAGATTT
>Ceratotherium_simum
ACAATCTATCATTCTGAATTAAAAGGCAGTACGTT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TTTAAT
TAAAGATGTTT---AATGCATATGTCT---TTTTTTATTGAGGCATGATTGGCA---TAACATTACATTAATTTCAGTTG
TGCAACATAATGATTTG-ATATTTGTATATATTGCAAAATGATCATCACAATAGGTCCAGTTA--ATGTCCATCACCATA
CAGAGTTACAAAATTTTTTTTCTTGTGATAAGAACTTTCAAGATCCACTCTCCTAGCTACTTTCAAATATGCAATACAGT
ATTACTAACTATAGTCACCATACTGTA----CATTATATCCCTATTATTTATTCATTTT--ATAACTGGAAATTTGTAC-
--AACG--------TACATCT---TGATGTCTCTAATTCAAATTCTCATATAAATCCTTTAGTAAAATAGATTT
>Canis_familiaris
ATAGCCTATCATTCTGAATTAAGGGACACTATATT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TGTAAT
TAAAGATGTTT---AATGTAGATGTCT-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------TGATGCTTCTAATGTAAATCCTTATATAAATCCTTTGATAATACAGATCT
>Felis_catus
ATAAACTATCAATGTGAATTAAAAGACACTATGTTGGGGGGTGGCTGGCTGGCTCAGCTGGTGAAGCATGTGACTCTTGA
TCTCGGTGTTGTGAGTCCAAGCCCCATGTTGAGTATGGAGATTACTTAAAAAATAAAATCTTAAAAAATAAAAATAAAAG
ACACAATGTTTTTGTTTGTTTTAAAGTTTATTTATTTTGAGAGAAAGAGAGAGAGACAGGGTATTTGAGCAGGTGAGGGG
CAGAGAGAGAGAATCCCAAGTAGGTTCCACACTGCCAGCATAGAGCCTCACACAGGGTTCAAACCCACAAAATGTGAGAT
CATGACCTGAGCCGAAGTTAAGAGTCAGACACTTAACTGACTGAGCCACCCAGGTGTCCCAAAGACACTATGTTTTTAAT
TAAAGATGTTT---AATGTAGGTGTCG-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------TAATGCTTCTAATGTAAATTCTTGTATAAATCCTTTAATAAAAAAGATCT
>Manis_pentadactyla
ACAATCTATCATTCTGAATTACAAGGCAATTTGTT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TTTCAT
TAATGATGTTT---AACGTAGATATCT-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------TGATGCTTCTGATGCAAATC-------------TTTAGTAAAACAGACTT
>Myotis_myotis
ACGA----TCAGTCTGAGTTAAAAGTCAGTATGTG---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TTTAAT
GAAAGAT-TTC---AATGTGCATGTCT-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------TGATGCCTCTCATTCAAATCTTCATATAAATC-TTTAATAAAACAGATTT
>Rousettus_aegyptiacus
ACGCTCTACCCTTCTGCGTTAAATGGCAAAACGTT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TTTAAT
CAAAAGCGTTT---GATGTACATGTCC-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------AGATGCTTCTAATGCATATTTTCATATAAATCCTC-AGTAAAACCGATTT
>Solenodon_paradoxus
ACTA----TTATTCTGAATTAAAAGAAAATGTGCT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TTTAAT
TCAAGATGTTT---TATGTACATGTTT-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------TGATGTTTCTAATTTAAATCCTTGTATAAATCCTTCAGTAAAACAGATTT
>Sorex_araneus
GCAA--TGTCTTCCTGGGTCAAAATATTG---TTT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TAAAAT
CAAAGATGCTT---AAAATA-----CT-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------AGATACCTTGAATTTAAACTC------------TTGGATACAACAGATCT
>Homo_sapiens
ACAATCTATCATTCTGAATTACAAGGCAAGGAGTT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TTTAAT
TAAAGACATTT---AATATACATGTCA-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------CGATGCCTCTAAGTCAAATTCTGGTGTAAACCTTTTAGTAAAAGAGATCT



Horse24_LTR

>LTR21_EC
--------------------------------------------------------------------------------
-----------------------------------TGTGATATTGTGAT-TTATAAGAAATATATATATTTGGTCATTCA
GATGACCAAAATATATTTCTCATATATATTTGGTCTTCGTCCACA------GTTCCTGGCTCACAGCTCCCAAAACCCTT
GGAATTTCCTGAGCAATAAGAGCAATGGGAGCATCTTTTGTTATAATATTTGGTCTCTTGTCCTCAGTTCCTGAAATTNC
TTCAGAGCCATAAAGGTGAAATGGGTGTCTTGTTATTCATAACAAGCCCCT-----------------------------
----------------TTCCACCACAACTGGGTTTATGTTAATGAGGTGACTTTTGGAAAGCACCTAAGGATGGGGGCTG
GTTGCCAGGGGAACCAACCAT--GAATAGAGGGTTGGAACTTTCAGTCCCACCCCCT-GATTTCTGGGGAGGGGAGAGGG
GCTGGAGGTTGAATCAATCACCAATGGCCAATGATTTAATCAATCATGCCTATGTAATGAAGCCTCCATAAAAACCCAAA
AGGAGGGGGTTCAGAGAGCTTCCAGGTTGGGGAAC-----------CA-GAACACTTCCACATGCCACTGTGCTGGGCCC
CAAACTCCACGAGGACAGAAGCTCCTTTGCTTCAGGACCTTGCCCTATGTATCTCTTCCATCTGGCTGT---TGATTNAT
ATCCTTTAATATCCTTTGTAATAAANTGGTAATC------TAGTGAGTAAACGGGTTTCCTGAGTTCTGTGAGCCACTCT
AGCAAATTAA--TCAAACCCAAGGAGGGGG----TCATGGGAACCTCTGATTTATAGCCAGT-NGGTCAGAAGCACAGGT
AACAACCTGGGCTTGCGATTGGCATCTGAA-------------GTGGAGGGCAGTCTTGTGGGACTGAGCCCTTAACCTG
TGGAATCTGATGCTATCTCCGGGTAGATAGTGTCAGAATTGAGTTGAATTGTAGGACACCCAGCTGGTGTCCGAGAATTG
CTTGTTGGTGTGGGGAA-------------------ACCCCC--------------NCACTCACATTGGAATTGG-GTCC
A----------------------------------------------------------------------------
>Canis_familiaris
TTTCTGTTATGAGCCAGGTAGT----------------------------------------------------------
--GGTTATAGACCAGCTGGGTAGC--------------------------------------------------------
--TAGCT-TATAATATTTCTCATGTATATTTGGTCTTTGTTCAAA------GTAACTGGCTCACAGGTCTCCAAACCCTT
GAAA-TTCCTGAGAGATAAGAACAATGGAAGCATTTTTTGTCATAATATTTGGTCTTTTGTCTTCAGTGTCTGAAATG-C
TTCACAGCCATGAAAGTGAGATGGGTGTCTTATTATTCGTAACAAGTCCCT-----------------------------
----------------TTCCACCACTACTAGGTTTATGTTAATGAGATGATTTGGGGAAAGCACCTAAGGTTGGGGGCTG
GTTGCCAGTGTAGCCACTCATGTGATTAGAGGGTTGGAACTTTCACTCCTACCTCCTTAACCTCTAGGGAGGGGAGAGGG
GCTAGAGGTTAAATTGATCACCAGTG---------------------CCCTTTGTAATGAAGAATCCATAAAAACACAAA
AGGATGGGGTCAAGAGAGCTTCTGGATTGATGAACAGATGGAGATTCAGGGAGAGTGGCACAC-CCTGAGAGCATGA---
-AACCTTT--CTGC---------TGTTTT--CCTGTACCTTGCCCTATGCATATCTTCCATCTAGCTGTTTCTGAGTAAT
ATCCT---------TTTGTAATAAACTGGTCATC------TAGTAAGCAGAATA----TCTGAGTTCTGTGAGCTACTCT
AGCAAATTAA--TCAAACTCAAGGGTCAGT-GTATCATTGGCACCTCCTAGCTATAGCTGGCTAATTTAGAGGTGTAGGT
G--AACCTGAGCTTGTGACTAGCTTATGAAGT--------GGGGTGGGGGGCAGTCTTGTAGAACTGAGTCCTTTACCTG
TGGAATCTCATATTATGTCCAGG----TAGTGTCAAAATTGATTTGA-TCGTGGGACATCCAG-GGGTGATAGAGAATTA
CTCGAGTGGGAAGAGGAGGAGGAGAATTGCC------CCTCATTGCTACTCCCCAAACACACACAGTGGGACTGATGAGA
AGAATCTTTTA---CACAC---CTTAATGAAATTC--AGTATTTTTGTTAAAAGGAAGTGTTCATTCATCCATTCAA
>Felis_catus
TTTCTGCTGTGAGCCAGGCAGT----------------------------------------------------------
-GGTTTATAGGCTAGCTGAGCAGC--------------------------------------------------------
--TAGCC-TTAGATACTTCTCTGGTATATTTGGTCTT--TCCAAA------GTGGCTGGTTCACAGCTCCC-AAACCATT
GGAATTTCCTGAGAGATAAGAACAATGGGAGTATCTTTTGTCATGATATTTGGTCTTTTGTCCTCAGTTCCTAAAATT-C
TTCAGAGCCATAAAGGTGAGATGGGTGTCCTGTTATTCATAACAAGCCCCT-----------------------------
----------------TTCCAACACTACTAGGTTTCTGT---TGAGGTGACTTTGGGAAAGCACCTAAAGATGGGGGCTG
GTTGCCAGTGGAGCCAACCATGTGATTAGAGGTTTGGAACTTTCACTCCTACC-CCTTAACCTCTAGGGAGAGGAGAATG
GCTACAGGTTGATTTGCTCACCAGCGGCCAGTGATTTAATCAACCATGCCTATGTAATGAAGACTCTATAAAATCACAAA
ATGATGAGGTCCATAGAGCTTCTGGACTGGTGAACAGGTGGAGATTCAGGGAGGTTGGCACCC-TCTGAAGCCATGA---
-AACCTAT--ATGC---------CCTTCT--CCCATACTGTGCTCTATGAATCTCTTCCATCTGGCTGTTTCTGAGTTAT
ATCCT---------TTTATAATAAACTGGTCATC------TCACAAGCAAAATATTTTTCTGAGTAATGTGAGCTGTTCT
AGCAAATTAA-----AACTCAAGGGGCAGG-GGATCATTGGAACTTCTTTTTTATAGCTGGCTAA-TTAGAAGTGCAGAT
GATAATCTGAACTCGTGACTGGCAT-TGAAGT--------GGGGTGGGGTGCAGTCTTGTGGGACTGAGCCCTTCACCTG
TGGAATCTGACATTATCTCCACG----TAGTGTCAGAACCGAG-TGGATTGTAGGACGCCCAGCAGGTGACGGAGAATTG
TTGAGTGGGGAGAGGAGG-AGGAGATTTGCCACCCC-CCACCTCCCGTGCCCCAGAACACACACACTGGAATTGGTGAGC
TGAACCTTTTA---CACAC---TTTAATCAGATTC--AGTATTTTTGTTAAAAGGAAGCGTTTATTCCTCCATTCAG
>Manis_pentadactyla
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNN---NNNNN---NNNNNNATTGTGATTTTATAAGAA--ATATATATTTGGTTATTCA
GATGACTAACATATATTCCTCATACATATTTGGTGTTTGTCCATGGTCTTTGTTCCTGGCTCACAGCTCCC-AAACCTTT
GGATTTTAGTAAGCAAT-AGAGCATTGGGAACATCTTTTGCCATAATATTTGGT-TTCTGTCCCAAGTTCCTGAAATTGC
TTCAAAGTCATTAAGATGAAATGGGTGTCTTGTTATTCATAACAATTTCCT-----------------------------
----------------TGCCACTATAACTTGACTTATGTTAATGAGATGGTTTTTGGAAAGCACCTAAGGATGGGGGCTG
ATTGCCAGTAAAGCCAACCAT--GAATAGAAAGTTGGAACTTTTAGTCCCACC-TCTCCACCTCTGGGGAGGGGAGAGAA
GCTAGAGGTTGAATCTACTGCCAATGGCCAATGACTTAATCAATCATGCCTATGTAATTATGCTTCTATAACAACCCAAA
AGGACTGGGTTGAGAGAGCTTCCAGACTGGTGAACACATGGAGATTCAGAGGGAGTGGCACAC-AGAGGGGGCATGG---
-AAACTTC--ATAC---------CGTTTCCACCTATACCTTGTCCTATGTCTCTCTTCCATCTGGCTGTTCCTGTGTTAT
ATCCC---------TTTATAATAAACCTGTAATC------TAGGAATCAAAATGTTTTTCTGAGTTCTGTGAGCTGCTTT
AACAAATTAAAGTCAAGCTCAAGGGGGAGGCTAATCATAGGAAACTTCTATCTATAGCTGCTCAG-TCAGAAGCATAGGT
GATAACCTGGACTTTTGACTGTTATCTAAAGTGGGGTGGAGGAGTGGGGGACAGTTTTGTATGACTGAA-CCTTCATCTA
TGGGAGCTGAGGCTATCTCCAGGTAAACAGTGTCAGAATTGGTTTGAATTGCAGGACATCCAGCTGGTGTTGGAGAATTG
CTATGATATGCACA-----------------------------------CATTCAGAGACATACACTGGAATTGGTGAGT
GGAACCTTCTA---TAGAC---TTTAATCGAATTC--CATTTCTTTTTGAAA--GAAGTGCTCATTCATCCATTCAA
>Sus_scrofa
TTTTTGCTATGAGTCAAGCACTCTACTTGCCACCTGCAATACAAAGAGGAGGAACCCAGACAGAATCTCTTTATTCAAGG
AATTTTTTAGACCAGTTGGGAAAA---CAAAT---GGCAATACTGTGA-TTTAGAAGAA--ACATATATTTGATCATTCA
GATGACTAAAATATATTTCATATGTATTTTTTG-CTTTGTCTATG------GTTCCTGGCTCACAGCTCCCAAAACTCTT
GGAACTTCCTGAGTGATAAGAGCCCTGGGAACATCTTTTATCATAA---TTAGTCTTTTGTCCTCAGTTCCTAAAA----
-------CCATAAAGGTGAAATAGGTGTCTTATTATTTTCAAAAAGGCCCT-----------------------------
----------------TCCCACCACAGCT-GGCTTATGTTAATGAACTGACTTTGAGAAAGTACCTAAAGATGGAGACTG
GTTGCCTGTGGAGTCAATCCTGAGATTAGAGGGTTGGAACTTTCAGTTGCACC-CATCCACCT--AAGAGGAAAAGAGGA
GGTGGAAGTTTAATCAATCACCAGTG-CTGATGA------CAATTATGCCTATGTAATGAAGCCTCCATACAATCCCAAA
AGGACTGGGTTCA-AGAGTTTCTTGGTTGGTAGACACATGGAGATTCAGGAAGAGTAG-ACATGACAGACAGCATGG---
-AAACACA--GTGT---------CCTTCC--CTCATACCTC------TGCATCTCTTCAGGCTAGTTGTTCCTGAGTTAT
ATCCT---------TTTATAATAAAGTGGTTATC------TACTAAGCCAACTGTTTCCCTGAGTCCTGTGAGTCCCTCT
AGCAAATTAA--TCAAAACCAAGGATGGGG-GGATCATTAGAACCTCTTACTTATAGCCAGTCAG-TCAGAAGCACAGGT
GATAACT--GACTTTTGACTGGCATCTGAAGTGGGATG--GGGGAGGGGGCCAGGCATGTAGGACTAAGCCCTTCACCTG
TGGGATCCAACATTATCTCCAGGGTAATAGTGTCAGAACTGAGTTGAGTTGTAGGACATCCAGCTGTTG-TGGAGAATTG
CTTA----------------------------------------------------------------------------
-----------------------------------------------------------------------------
>Tursiops_truncatus
TTTCTGCTATGAGCTAGGTACTTTGCTTGGCACCTGCT----AAAGAGGAGGAATAGAGGCAGGATCTCTTTATTCATGG
-AGTTTTTAGACCAGTTGGGAAGA---CAAAT---GACAATATTGTGA-TTTATAAGGT--ATACATATTTGATCATTCA
AATGACCAAAATATATTCCACATATATTTTTTGTCTTTGTCCGTG------GTTCCTGGCTCACAGCTCCCCAAACCCTT
GGAATTTCCTTAGTGATAAGAGCCATGGGAGCAT-TTTTATTATAATAATTCGCCCTTTGTCCTTAGTTCTTGAAA----
-------CCATAAAAGTGAAATGGGGGTCTTATTATTTACAACAAGATGCT-----------------------------
----------------TCTCACCACAACTAGGTTTATGCTAATGAACTGAATTTTGGAAAGCACCTAAGAATGGAGGCTG
GTTGCCAGTGGAGCCAATCATGAGATTAGAGGGTTGGAACTTTCAGTCCCACC-CCTCCACCTCAGGGGAGAAGACTGGA
GGTGGAAGTTGAATCAATCACTAATG-CCAATGATTTAATCAATCATGCTTATGTAATTAAGCCTCCTTAAAAACCCCAA
AGGACTGGGTTCAGAGGGCTTCTGGGTTGGTAAACATGTGGAGATTCAGGGAGAGTGG---AT-GGAGACAGTATGG---
-AAGCTCA--GGGT---------CCTTTC--CCCATACCTTGCCCTATGCATCTCTTCCATCTGGCTGTTCCTGAGTTAT
ATCCT---------TTTATAATAGACTGGTTATCTATCATTAGTATGGCAAATGTTTCTCGGAGTCCTGTGAGCC-CTCT
AGCAAATTAA--TTGAACTCAAGGGTGGGG-GGATCATTGGAACCTCTGATCCATAGCCACTCAG-TCAGAAGCACAGGT
GATAATC--GACTTTCAACTGGAATCTGGGGTG-------GGGGTGGGGGGACAGTCTGTAGGACTGAGCCCTTCACCTG
TGGAATCTGTTGCTATCTCCAGGGAAATAGTGTCAGAATTGAGTTGAGTTGTAGGACATCCAGCTGGTGTTGGAGAATTG
CTTG----------------------------------------------------------------------------
-----------------------------------------------------------------------------
>Equus_caballus
TTTCTTCTGTGAGCCAGGCACTTTGCTCGGCACTCGGGATACAAAGAGGAGGAACACAAACAGGATCTTTTTATTCATGG
-AGTTTATAGACCAGCTGAGGAGC---CAAAC---TGTGATATTGTGA-TTTTTAAGAA--ACATATATATAGCCATTCA
GATGAGAAA-------------TACATATTTGGTCTTCATCCATG------GTTCTTGGCTCACAGCTCCCAAAATCCTT
GGAATTT------------------TGGGAACATCTTTTGTCATAATAATTGATCTTTTGTCCTCAGCTCCTGAAATCAC
TTCAGAACCATAAAGGTGAAATGTGTGTCTTGTTATTCATAACAAGTCTCT-----------------------------
----------------TTCTACCACAACTGGGCTTGTGTTAATGAGATGACTTTTGGAAAGCCCCTAAGGATGGGGGCTG
GTTGCCAGTGGTGCCAACTGTGTGATTAGAGGGTTGGAACTTTCAGTGCCACC-CCTCTACCTTTAGGGAGGGGAGACGG
GCTGGAGGTTGAATCATTCACCAATGGCCAATGATTTAATCAATCATGCCTACGTAATGAAACCACCATAAAAACCTGAA
AGGACTGGGTTTGGAGAACTTCTGGGTTGGTGAACACGTGGAGATTCAGGGAGAGTGGTGAATGAGAGAGAGTATGG---
-AAGCTCT--GCAC---------CCTTTC--CTAATACCTTGCTTTAGGCTTCTCTTCCACCTGCCTGTTCCTGAGTTAT
ATCCT---------TTAATAATAAACTGGTAATC------TAGTAAGCAAAGTGTTACTCTGAGTTCTGGGAGCTGCTTT
AACAAATTAG--TCAAACCCAAGGAGGCGG-GAATCGTTGGAACCTTCAATCTATAGCCAGTCAG-ACAGGAGCACAGGT
GATAACCAGAACTTGCAACTGGTGTCTGAAGTTGTGTT--GGGAGCGGGGGTAGTCTGGTAGGACTGAGCCCTTCACCTG
TGGGATCTAATGCTATCTCTAGGTAAATAGTGTCAGAATTGAGCTGAATTGTAGGACACCCAGCTGGTGTTGGAGAATTG
CTTGGATGTATGTGGAAA--------------CCCC-GCCCCACCCTCCCCCCCCAACACACATACTGGAATTGGTGAAG
AAGATCTTTTA---GAGAC---CTTAATCAAATTC--AGTCTCTTTGTTAAAAGGAAGTGTTCCTTCATCCACTCAA
>Ceratotherium_simum
TTTCTGCTATGAGCTAGGCACTTTGCTTGGTACCCGATATACAAAGAAGAGGAACACAGACAGGATCTCTTTATTCATGG
-AGTTCATAGACCAGTTCAGGAGC---CAAAC---TGTGATATTGTGA-TTTACAAGAA--ATATATATTTGGTCATTTA
GATGATGAAAATATATTTCTTGTATATATATGGCCTTCTTCCACA------GTTCCTGGCTCATAGCTCCCCAAACCCTT
---------------------------GGAACATCTTTTGTCATAATATTTGGTCTTTTGTCCTCAGTTCCTGAAATCAC
TTCAGAGTCATAAAGGTGAAATGGGTGTTTTGTTATTCATAAATACATTTCATAAATAAATACATAAATTACATAAATTC
ATAAATACATTCATAAATACACCACAACTGAGCTTATGTTAATGGAATGACTTTTGGAAAGCCCCTAAGGATGGGGCTTA
AT------------CAACCATGTGATTAAAGGCTTGGAACTTTAAGTCCCACC-CCTCCACCTCTGGGGAGGGGAGAGGG
GCTGGATGTTGAATCATTCACTGATGGCCAATGATTTAATCAACCATGCCTATGTAATGAAGCCCCTATAAAAACCCACA
AGGACTAGGTTTGGAGAA-TTCTGGGTTGGCGAACCAGTGGCGATACAGAGAAAGTGGTGCATGAGAGAGAGCATGG---
-AAACTCT--CCAC---------TCTTTC--CCCATACCTTGCCCTATGCATCTCTTCCACCTGGCTGTTCCTGAGTTAG
ATCCT---------TTTATAGTAAACTGCTAATA------TAGTAAGCAAAGTGTTTCTCTGAGTTCTCCGAGCTGTTCT
AGCAAATTCA--TTGAATCCAAGGAGCGGG-GAATAGTTGGAAC---TGATCTATAGTCCATCAG-TCAGGAGCACAGGT
GATAACCTGAACTTGCGATTGGTGTCTGAAGTTGTGGGA-GGGAGTGGGGGCAGTCTTGTAGGACTGATCCCTTTACCTG
TGGGATCTGGTGCTATCTCTAGGTAAAGAGTGTCAGAATTGAGTTGAATTGTAGGACACTCAGCTGGTGTTGGAGAATTG
CTTGGGTGTGTGTGGAAA-------------------------TACACCTTCCACAACAGACACACTGGAATTGGTGAAT
AGAAACTTTTA---AAGTC---CTTAATCAAATTC--AGCCTCTTTGTTAAAAGGAAGTGTTCAGTCATCCACTCAA
>Myotis_myotis
TTTGTGTTATGGGCCAGGCACT----TTGGCACC-AAGATATAAGGAGGAATTACAAAGACAAGATCTCTTTATTAATGG
CAGTTTTTAGGCCAGTTGGGGATC---CAGGT------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------CTTAATAAAATTC--AGTCA----------------------------CATGCAA
>Rhinolophus_ferrumequinum
TTTCTGCTGTGAGCCAGGCACTGGGCTTGGTACCAGAGATACAAGGCGGAGTCGCACAGATAAGATCTCTTTATTAACAG
-AGTTTATAAATCAGCTGGGGAGC---CAGAT------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------AGGAATCACATTT--GGTCTCTTTGTTAAAAGGAAGTATT--------CATTCAA
>Erinaceus_europaeus
TTTCTGCTATGAGCCAGGCACTTTGCTTGTTACCAAGAATACAAATCAGAACTACATTGACAGGTTCTCTTCATTCATGA
-AATTTATAAGCCAACTGTGGTAC---CAGAT------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------TTTAACCACATTC--GGTTTCTTTGCATAAAGAAAGCACCTGCTCATCCA--CAG
>Sorex_araneus
TATCTGCTGTGGGCCAGGTGTTTTGCTTGGTCCCAGAAAAACAAAAAGGCATTATTCAGACAGGATCTCTTTATTCATGG
-AGTTTCTTCACCAG-TGGGGATC---TAGAT------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------CTGAATTAATTTCAAAATTTATTTATTAAAATAAGCTGTTCATTTGTCCATTAAT
>Homo_sapiens
TTTCTGCTTTGTATGAAGCACTGTGCTTGGCTCCAAGGATATAACGATGAGAAATACAAACACGATGTCTTTAGTCTTAG
-GGTTTACAAACCCTTTGGGGAGC---CAGAT------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------CTTAATCAAACTC--TT-------------------TGTTCATTCATCCATCCAA



Horse28_LTR

>LTR21B1_EC
--------------------------------------------------------------------------------
--------------------------TGTGATATTGTGATTTATAATAAGAAATATATATTTGGTCTTTG-CTCCGTTTC
TGGCACAGAGCTCCTAAAACCCTTGGAATTTCCTAAGTGATGAGA-------GCGATAAAGGTGTCTTTTGTTATGTTAA
TGAGGTGACTTTTGGA-AAGCACCTAAGGATGGGGGCTGG-TTGCCAGGGGAACCAACCATGTGATTAGAGGGTTGGAAC
TTTCAGTCCCA--CCCCGACCTCCGGGGAGGGGAGA-GGGGCTGGAGGTTGAGATCAATCACCAATGGCCAATGATTTAA
-TCAATCATGCCTATGTAATGAAGCCTCCAT--AAAAACCCAAAAGGACGGGGTTCGGAGAGCTTCCGGGTTGGTGAACA
CGTGGAGATTCGGGGAGAGTGGCGCGCCCGGAGAGGGCATGGAAGCTCTGCGCCCCTTCCCACATACCTTGCCCTATGCA
TC-TCTTCCATCTGGCTGTTCCTGAGTTATATCCTTTT--ATAATAAACCGGTAATCTAGTAAGTAAAATGTTTCTCTGA
GTTCTGTGAGCCGCTCTAGCAAATTAATCGAACCCAAGGAGG----GGGTCGTTGGAACCTCCGATC--TATAGCCAGTC
GGTCAGAAGCACAGGTGACAACCTGGACTTGCGATTGGCGTCTGAAGTGGGGGGTGGGGACAGG--------TCTTGTAG
GACTGAGCCCTTAACCTGTGGGATCTGATGCTATCTCCAGGTAGATAGTGTCAGAATTGAGTTGAATTGTAGGACACCCA
GCTGGTGT-CGGAGAATTGCTTGGTGGTGTGGGGAAAAACTCC---------ACACACACATTGGAATTGGGTAC-CA--
-----------------------------------------------------------
>Canis_familiaris
AAGAAAGGCAGGAGTCTG------------AGAAAACTTAAAGACTG--C-TTTCCACGGAAGCCTGAGCACTGGGAT-G
GGGTGCAGTGGGGAGA---ATAG---TATGATACTGTCATTTTAAGTATATAATATATATTTGGTCTTCATCCCCATTTC
TGGCTCAGAGATCCTAAAAACCTTGGAATTATCTAAGCAGTGAGA-------ACTATAAAAGTGTCTTTTGTTATGTTAA
CGAGGTGATTTTTGCA-AAGTGCTTACATATGGGGCCTGGTTTGCCAGGACCTTCAACCTTGAGAGTGGAGGGTTGAAAC
TTCCAGTCCCAGTCCCCAACTTCCAAAGGAGGGAAGAGGGCCTGGAGATTCAGTTCAAT--------------GATTTAT
-TCAACCTGGCTTATGTAATGAAACCTCCAT-AAAAACCCAAAAAGAATGGGATTCAGAGAG-TTCTAAATTGGTGAACA
TTTGGAGATTTGAA-AGAGTGGTGCTCTTGGTAAGGGCATAGAAGTTCCATGCCCTTCCCT-CATACCTTGCCCTTTGCA
TT-TCTTCCATCTGGCTCTTCCTGAGTCCTATCATTTT--ATAAGAAACCAATGATCTAGTGAGTAAACAAATTTCCTGA
GTTCTGGGAGCCACTTTAGCAAATTAATGAAACCTGAGGAGG----GGGTCATGGG-ACCTCTGATA--TTTAGCCAC--
--TCAGAAGTACAGGTAATATGCTGGGCTTGCCAACAGTGTCTGAAGCAGGACTGGGGAGGCAG--------TCTTATGG
GACTGATCCTTTAACCTGTGGGATATGACGCTATCTCGGGGTAGA----GTCTGAATTGAGCTGATCTGTAGGACACCCA
GCTGGTGTCCCTAGAATTCATTGATGCTGTATGGAACCCCTACACA----CAACACTCATATTGAAAT----TGCTCAGA
ACACCAAAAGAG---ACAG---GAATTAAGAATGGAACTCCAGAGAGAGACGACTGACT
>Lynx_canadensis
AAGGAACACAGGGGGAAG------AGGGAGAAAAGTTTTGCAGATAG--C-TTTCCAGAGAAGCCTGAACACTGGGAT-G
GGGTGAATTGGGAGGA---ACAG---TGTGATATTATAATTTAAGATATGAAATCTATATTTGATCGTCATCCCCATTTC
TAAAA---------TGAAACCCTGGGAATTGCCCAAGCAATGAGA-------ACTATGAAGGTGTCTTTTGTTATGTTAA
TGAGGTGACTTTTGGACCCAGGCTTACACATGGGGGTTGG-TTGCCAGGACCTTCAACCATGTGAGTGGAGGGTTGAAAC
TTCCAGTTCCACTCCCCAACCTCCAAAGGAAGGAAAAGGGGCTGGAGATTGAGTTCAATCACCAGTGGCCAATGATTTAA
-TCAATCATGCTTATATAATGAAGCCTCCATAAAAAAACCAAAAAGGATGGGGTTCAGAGAGCTTCTGGGTTGGTAAACA
CGTGGAGATTTGGAAAGAGTGATGCTCTTGGAGAGGGCATGGAAGCAT--------------CATGTTTTGCCCTGTGCA
TTCCTTCTTATCTGGCTGTTCCTGAGTTA-----TTTT--ATAATAAACCTGTGATCTAGGGAGTAAACAAA-TCTGTGA
GTTCTGTGAGCCACTCCAGCAAATTAATCAAACCAGAGGAGG-----GGTCTTTGG-ACCTCTAATC--TATAGCTAGTC
AGTCAGAAGTACAGATAATAATCTGGGCTTGCCACCGGTTTCTGAAGTGGGAGTGGGGAGGCTG--------TCTTATGG
GACTAAGCCCTTAACCTGTGGGATCTGACGCTATCTCAGAGTAG----TGTCTGAATTGAGCTGAATTGTAGGACACCCA
GCTGGTATCCCTAAAATTGCTTGGTGCTGTGTGGGAAACCCCCA------CAACCCTCATATTGAAATTGGGTGCTCAGA
ACATCAAAAGAG---ATAC---GAACT-GGAGTGGACCTCAAGAGAGACATGACTGACC
>Manis_pentadactyla
GAGAAGGGCTGA--------------------------------------------------------------------
--------------------------------------------------------------------------------
----------CTCCAAAATCACTTGGCATTTCCTAAATGTACAGG-------GCTATCAAGGTGTCTTTTGTAATGTTAA
TGAGGTAACTTTTGGA-AAGGTCCCAAAGATAGGGGCTGG--------------TGGCCATGTGATTAGAGAGCTGAAAC
TTCCAGTCCCACCCTCTGACCTCAGAGGAGGTGAGA-GGAGCTGCAGATTGAGTTCAATCACCAATGGCCAGTGAGTTAA
-TGAGCCACGCCTATGTAATGGAGCCTCCAT--AAAAACCCAAAAGGATGGTGTTTGGAGAGCTTCCAGGCTGGTGAACA
CATGGAGGT----------------GCTGGGAGAGTACACAAAAGCTTGGTACCCTTCCCC-CATATCTTGCCTTGTGGA
TC-TCTTCCATTTTACTGTTCCTGAGTTATACTCTTTT--ATAATAAGCCAGTGATCTAGTGAATAAACAGATTACCTGA
-------GAACCACTCTGGCAAATTCATCAAATCCAGAGAGG------TTTCTGGGGACCTCTGATCTATATAGCCAGTT
GGTCAGAAGTACAGGTAATAACTTTGACTTGCCACTGGTGTCTTAAATGGGA--------------------------AG
AACTGAACACTAAATCTGAGGAATCTGATG----CACTGGGTAGACAGTGTCTGAACTGACTTGAGTTGTAGGACACCAA
ATTGGTGTCCTAAAAATTGCCTG-TGTTGTGTGGAATCCCCTGA------CAATGCCCACATTGAAATTAGATGCTCAGA
ACACCAAAACAG---ACAG---GAACC-AGAGTGGACCTCAGAAGAGTTCTGACTGACC
>Sus_scrofa
GAGAAGATCAGGGGAAAGTTCT--GAAAAGAAAAGTTTTGAACGCAGAACTTTTCCATAGAAGCCCAAGCACT-GAAT-G
GGGTGCTGGGGGAGGA---AGAG---TGTGAAACTGTGATTTATAATAAGAAATATATAT-------TCGTCCCCATTCC
TGACACAGAGCTCCTAAAATCCTTATAATTTTCTAAGTGAAGAGACTGATAGAAGATAAAGGTGTCTT-TGTTATGAAAG
TGAGGTGACTTTTAGA-AAGTGCCAGGAGGTGGAGCTTCG-TTGCTTGGACAGCCAACCAAGTGATTCAATGGTTGGAAC
TTCC----TCTTCTCCTGACCACTGGAGAGGGAGGA-GGTGCTGGAGATTAAATTCCATCAGCAAAGGCCAATGAGTTAG
-TCAATCATGACTATGTAATGAGGCCACCATAGAAACGCAAAAAAGGATGAGGTTTGGAGGGCCTCCAGGGTGGTGAACA
CATGGAGACTGGGGGCACGTGGGGCACTCGGAGAGAGCCTGGACACCCCATGCCCTTTCCC-CATAC--TGCCCCATGCA
TC-TCTTCCATCTGGCTGTTCCTGAGTTATAGTCTTTTACATAATAAACTGGTAATCTAGGAAGTGAAAGATTTCTCTGA
CTCATGTGGGCCACTTTAGCAAATTAATCTAACCCAAGAAGGGAGCAGGGTGTGGGAATCTTTGATC--TGTGGCCAACT
GGTCAGAAGTACAGTTAACAAGCTGGGCTTGCAACCGATGCCTGAAGTTGTGGATGGGTGAAGGAGTGTAGTTCTAACAA
GACTGAGCCATTGACCTGTGGAATCTGAATCTATCTCCAAGTAGATAGGGTCAGATTTGAACTGAAGGATAGGACATCCA
GCTGGTGACCTGAGAATTGCTGGGTGCTGTTTGGGAAACTC----------------CACACTGAAATCAGGTGCTCAGG
ATACCAAAAGAG---ACAG---AAACC-AGAGTGGACTTCAAGAGAGATGCAGCAGAGC
>Bos_taurus
GAGAAGAGCAGGGGAAAGTTCTGAAAAGAGGAGAGTTCTGAAGACAGAAC-TTACCAAAGCAGCCCGAGGACT-GGAT-G
CAGTGCA----GGAGA---ACAG---GGTGCAACTGTAATTTATAATCAGAAACATGTTTTTGGTCTTCATCCCCATTTC
TGGTATAGAGTTCTAAAAACCCTTGTAATTTCCTGAGTGATGAGA-------GCAATCAAGGTGTCTTTTGTTATGTAAA
TAAGGTGACTTTCCTA-AAGTACCTAAAAAT--GTGTTGC-CAGCAGGGCTGGCCAACCAAGTGATGAAAGGGTTGGAAC
TTCCAGCCCCATCTCCTGACCACTGGGGAGGAAGGA-GGGGCTGGAGATT-----CAATCACCAATGGCCAATGAATTAA
GTCAATTATGACTATATAATGAAGCCACCAT-AAAAACCCCGAGAGGATGGGGTTTGGAGAGCTGCCATGGTGGTGGACA
CATGGAGATTTGGGTAGCATGGTGCACTTGGAGAAAGTATGGATGCCCCTTGCCCTTTCTC-CATGTCTCGCCCTATGCA
TCTTTTTCCATCTGACTGTTCCTGAGTTATATTCTTTA--ATAATAAACCAGTAATCTA---AGTAAAATGTTTCTCTGA
GTTTTATGAGCCACTCTAGCAGAGTAATGAAACCCAAGGAGGAAG-AGGTTGTGGGTATCTCTAAGC--TATAGCCAGTT
GGTCAGAAGTACAGGTAACAACCAGGGCTTGCAACTGACATCTGAAATTGGGGGCTGGTGGAGTGATTTAG---TCACGA
GACTGAGCCCTTACCCTGTAAAATGTGAATCTATCTCCAGGTTGATAGTGTCAGATTTGAACTGAACT----GACAACAG
GCTGGTGTCCTGAGAATTGCTTGGTGCTGTGTGAGAAACCCCCT------CAATACCCAAGCTGAAATAGGGTGCTCAGA
ATACCAAAAGAG---GTAG---AAACT-GGAGTAGATCTCAAGACGAATGCAACTGAGC
>Equus_caballus
GAGAAGGGAATGGGAAAG------GAGGAGAAAAGTTCTGAAGGCAGAAC-TTTCCAGAGAAGCCTGAGCACT-GGAT-G
GGGTATAATGGGGGGA---ACAG---TGTGATATTATGATTTATAATAAGAAACATATATTTGGTCTTCAACCCTGTTTC
TGGAACCAAGTCCCTAAAACCTTTGGAATTTCCTAAGTAATGAGA-------GTCATAAAGGTGTCTTCTGTTATGGTAG
TAAGGTGGCTTTTGGA-AAGCACCCAAGGATTGGGGCTGC-TTGCAAGGACAGCCAATTACGTGATTAGAAGGTTGGAAC
TTAGAGTTCCACCCCCTGACCACTGGGGATGTCAAAGGGGGCTGGAGATTGAGTCCAATCACCAATGGCCAGTAATTTAA
-TCAATCAGGCCTATGTAATAAAGCCTCCAT--AAAACCCCAAAAGAACAGGGTTTGGAGAGCTCCCATGTTGGTGAACA
TACAGAGGTGCGGGGAGAGTGGCATGCTCAGAAAGAGCATGGAAACTCTGTACCCTTTCTC-CATACCTTGCC-TAAGCA
TC-TCTTCCATC----------------------TTTT--ATAATAAACCAGTGATCTAGTGAGTAAACAGACTTCCTGA
GTTCTGGGATCCACTCTAACCAATTAATCAAGCCTGAGGAGG----AGATCACGGGGACCTGTGATC--TATACGCATTC
AGTGAGAAATACCGGTAACAACCTGAGATTGCGACTGGTGCCTGAAGTGGTGGGTAGGGGCAG---------TCTTATGG
GACTGAGCTCTTAATCTGTGGGATCTGATACTATCAATGGGTCA----TGTCAGAATTGAG--GAACTGTAGG---CCCA
GCTGGTGTCCTGAGAATTGTTTGGCGCTGTGTCAGAAACAGCCCCC----CAACACCCATGTTGAAATTGGGCACTCAGA
ACGCCAAAAGAG---ACAG---GAACC-AGAGTGGACCTCAAGAGAGACACAACTGACC
>Ceratotherium_simum
GAGACAGGCAGGGGGAAG------AGGGAGAACAGTTCTGAAGGCAGAGT-TTTCCAGAGAAGCCTGAGCACT-GGAT-G
GGGTGTGATGGGAGGA---ATAG---TGTGATATTATGATTTATAATAAGAAATATATATTTGGTCTTCGCTCCTGTTTC
TGGCACCGAGCCCCTAAAACCTTTGAAATTTTGTAAGTAATGAGG-------GTCATAAAGGTGTCTTTTGTTATGTTAA
TGAGGTAGCTTTTGGA-AAATACCTAAGGATAGGGGCTGC-TAGCCAGGACAGCCAACCTTGTGATTAGAGAGTTGGAAT
TTCCAGTCCCACCCCCTGAC--CTAGGGATGTCAGA-GGGGCTGGAGATTAAGTTCAATCACCAACGGCCAACAATTTAA
-TCAATCAGGCCTATGTAATGAAGCCCTCAT--AAAAACCCAAAAGAACAGGGTTTGAAGAGCTCCTGGGTTGGTGAACA
TGTGGAGGTGCCAAGAGAGTGGCACACTCGGAAAAAGCATTGAAGCTCCGTGCCCTTTGCC-CATACCTTGCCCTGTGAA
TC-TCTTCCATCTGGCTGTTCCCGAGTTATATCCTTTT--GTAATAAACCAGTGATCCAGTGAGTAAACAGGTTTCCTGA
GTTCTGTGAGCCACTCTAGCAAATTAATCAAACCTGAGGAGG----GGATCATGGGGACCTCTGATC--TACAGCCATTC
AATGAGAAGTACCAGTAACAACCTGACATTGAGACTGGTGTCTGAAGTGGGGGGTAGGCGCAG---------TCTTACGG
TA-TGAGCCCTTAATCTATGGGGTCTGATGCTGTCTCTGGGTCAAGAGTGTCAAAATTGAGTTGAATTGTAGG-----CA
GCTGGAGTCCTGAGAATTGCTTGGTGCTGTGTGAGAAACACTCCCCCCCACAACACTCACATTGAAATTGGGTGCTCAGA
ACACCAAAAGAG---AGAG---GAACC-AGGGTGGACCTCAAGAGAGACACAACTGACC
>Myotis_myotis
GAGAAGGGCAGGGGAA--------GAGGGAGAAAGTTCTGAAGGGAGAGT-TTTCCAGAGAAGACTGAGCACT-GCAT-G
GGGAGCAGTGGGAAAA----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------ACAG---GAACC-AGAGTAGACATCATGGGAGACACCACTGACC
>Rousettus_aegyptiacus
GAGAAGGGTAGAGGGAAG------AGGGAGAGAAGTTCTGATAGCAGAGC-TTTCCAGAGAAGGCTGAGCACT-GGATGG
GGGTGCAGTGGGAGGA----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------ACAG---GAACC-AGA-TGGCCATCAACAGAGAGGCC-CTGACC
>Erinaceus_europaeus
GAAAAAGGCATTAAGGAG---------GAGAGAAGCTCTG-ACATAGAAC-TTTTCAGAGATGTCTGAGCAAT-GGAT-G
GGGTGCAACAGGAGTG----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------GTAG---CAATC-TGAGCAGATCTCAAGAGAGTCATGACTGACC
>Sorex_araneus
TGAGAATGCAGAAAGAAG-------AGAAGACAAGCTCTGAAGACAGAAC-TTTCCATAATTATCTGAGCACT-GGAA-A
AGATACAATGGATAGA----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------ATGA---GAACC-AGAGTGGACCTCTAGAGAGACATAAGGGACC
>Homo_sapiens
GAGAAGGGGAGACGGAAG------GGGAAGGAAAGTTCTGAAGGCAGAGG-TGTCCAGAGAAGCCGAAGCATG-CAAT-G
GGAGGCACAGGAGTGA----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------GAGT---GAACT-----------TCAATAGACACACA-CTGACC



Horse34_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
-----------------------------------GTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTG
GAGATCTAATGTACAGCATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTA
AGTGTTCTCACCACAC-ACAAAAAAA-TGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCAT
TTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAA
TAAAGCTGGAAAAA------------------------------------------------------------------
-----------------------------------------
>Sus_scrofa
ATTTCAAAGAACATTTGTTACATAACTTCAAC---------TAATTGAAACT--ATTGAAAATCAGTAATTTTT---TAA
AAA-----CTGCAGTC---AA-AAGGTACAAA------------------CTTCCAGTTAG-------AAGTAAGTCCTT
GGGATTTAATATACAGAATGGTGGCTGCAATTTATAATACTGTATTGCATACTTGAAATTTCCTAACAGAGTAGATCTTG
AAAGTTCTCAACACAC-AAAAAAATA--TGTAACTATGTATGGTGGCTG--ATTGATGTTAGACATATTATGGTGATCAT
TTCACAATATATACAGATACCGAATCATTATGTTTTACATTGGAAATGAATATAA-----ATATGTCAATTATAACTC--
-----------------AAT--AAAAAAGTAGTACAAA---AGAAC-----------------------TTT-GATGAAC
CAAA--TGAGCTCATTAAATACTGACACT-AAACCTTCTTC
>Bos_taurus
ATTTCAAAGAACATTTGTTATATAACCTCAAC---------TAACTGAAACAGATTTGAGAATCAGTAA--TTT---AAA
AAA-----CTGGAATC---AA-AAGGTACAAA------------------TTTCCAATTAT--AAATTAAATAAGTCCTG
GGAATGTAATGTACGGAATGATGACTACAGTTTATAATACTGTATTGCCTACTTGAAAGTT--TAAGAGAGTAGATCTTA
CATGTTCTCATCCCAAGAAAAAAAAAATTGTAACTATGAATGGTGACTG--ATGTTAATTAGAC-TATTGTGGTGATCAC
TTGGCAATGTATGCAAATATTG-ATCATTATGATTTACACTTGAAGCAAATGTAA------TATGTCAACTACACATC--
-----------------AATTTAAAAACATAGTGCAAA---GGATC-----------------------CTT-AATGAAC
TAAAA-TCAGCTCATTAAATACTAACATT-AAA-CGGCTTC
>Equus_caballus
ATTTCAAAAAACATTTGTTGTGTAACCTCAAC---------TAATTGGTGCAGAATTGAGAATCAGTAA--TTT---AAA
AAC-----CTGCAGTC---AA-AAGGCACAAA------------------CTTCCAGTTAT---AAACAGATAAGTCCCT
GGG-TGTAATGTAGAGCATAGAGACTATAGTTAACAATACTGTATTGTATATTTGAACGTTGCTAAAAGAGTAGATACTA
AAAGTTCTCATCCCCC-CCAAAAAAT--TGTCACTATGTATGGTGATGG--ATCTTAGCTAGACTTATTGTGGTCATCAC
TTTGAAATATATAAAAATATCAAATCACTATGTTGTACACCTGAAACTCATATAC---TTGTATGTCAATTATAACTC--
-----------------ATT-AAAAAATGTAGCGCAAA---GGATC-----------------------CTT-AATGAGC
CAAAA-TTAGCTCATTAAATTTTG-CACT-AAAGCCTCTTC
>Ceratotherium_simum
ATTTCAAAAAACATTTGTTGTGTAACCTCAAC---------TAACTGGAGCAGAATTGAGAATCAATAA--TTT---AGA
AAC-----CTGGAGTC---AA-AAGGTATAAA------------------ATTCCAGTTAT--AAAATAAATAAGTCATG
GGGATGTAATGTACAGCATGACAACTATATTTAATAATATTTTATCGTATATTTGAAAGTTGCTAAAAGAGTAGATCTTA
AAAGTTCTCATCATAA-GAGAAAAAAAATGTTAC-ATGTATGGTGATGG--ATGTTAACTAGACTTATTGTGGTGATCAT
TTTGCAATATATACAAATATCAAATCATTATATTATACACCTGATACTCATATGA---CTTTATGTCAACTATACCTC--
-----------------TATAAACAAAAGTAGCACAAA---GGATC-----------------------CTT-AATGAAT
CAAAA-TTAGCTCATTAAATTTTGACACT-AAAGCTTCTTC
>Canis_familiaris
ATTTCAAAGAATATTTGTTGTGTAACTTCAAC---------TCATTGAAACAGAACTGATAACCAGCAA--TTT---AAA
AAA-----CACA----------GAGGCACAAA------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------AGATTAATTAATTAAAATTGGTTTATCAATT-AATTAAT
CAAAA-TGGGTTTATCAAATTTTGACACTAAAAACTTCTTC
>Felis_catus
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---------NNNNNNNNNNNNNNCTGATAATGAGTAA--TTT---AAA
AAC-----CAA-----------GTAGCACAAA------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------AGATC-----------------------CTT-AATGAAT
CAAAA-TTGGCTTACTAAATTTTGACACT-AAAGCTTCTTT
>Manis_pentadactyla
ATTTCAAAGAATATTTTTTGTGTAACCTCAAC---------TAACTGAAACAGAATTGAGAATCAGTAA--TTT---AAA
AAG-----CAAA----------GTAGCAGAAA------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------AGATC-----------------------CTT---TGAGC
CAAAA-TTAGCT-----AATTTTGACATG-AAAGCTTCTAC
>Myotis_myotis
ATTTCAAAGAGCATTTGTTGTGTGACCTGAAC---------TAGTTAAAATGGAATTGACAATCAGTAA--TTT---AGA
AAA-----CAAAGTACTGTACTATAGCATAAA------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------TGATC-----------------------CTT-AATGAAC
AAAAGTTTGGCTTATTAAATTTTGACACT-AAAGCTTCTTC
>Rhinolophus_ferrumequinum
ATTTCAAGGATCATTTGTTGTGTAAGCTCAAC---------TAACTGTAACAGAATTGACAATTAGTAG--TTT---AAA
AAAAAAAACACAAAGA---ACTGTAGCACTAA------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------AGCTC-----------------------CTT-AATGAAC
CAAAG-TTAGCTCATTAAATTTTGACACT-AAAGCTTCTTC
>Condylura_cristata
ATATTAAGGAATACTTCTTGTATACTCTTGAT---------TAATTGAAACACAATGGAGAATCGGTAA--TTT---AAA
AAG-----CCAC----------TTACTGTAAC------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------AGATC-----------------------CTT-CATGGAC
CAAAA-TTGGCT-AT-AAAATTTGAC----AAA-CTTCTTC
>Uropsilus_gracilis
ATGTTAAG---------CTATATAATCTCAATAATATACCACAATAGTGACACA----AGAATCAGTAA---TT---AAA
AAT-----TCAC----------ATAG-ACAAC------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------ACATC-----------------------TTGAAATGAAC
CCAAA-CTGGCT-ATCATACGTTGATATTAAAA-CTTCTCT
>Homo_sapiens
ATTTCAAAGAGCATTTGTTGTGTAACCTTAAC---------TAATTG-GACACAACTGAGAATCAGTCA---TT---TAA
AAG-----AAAA----------ATAGCACAAA------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------GAATC-----------------------CTT-GATGAAC
CAAAA-TTGTCTCTTTAAGTTTTGACAGT-AAA-CTTCTAC



Horse36_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATATAC
GT------ATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTACCATTTTTTT
GTGTG---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------TGGTGAGAACACTTAAGATCTACTC--TCTTAGCAAATTTCAAGTATACAATACAGTATTATTAA
CTATAGTCACCATGCTGTACATTAGAT-----------------------------------------------------
-----------------------
>Sus_scrofa
TGTAAAATGGAGATACTAACTCCAGTTACATGAAATGATTGTTAAAGATAAA---ATAGAACATTTAAAT--------TT
TTTAAATTATTTAATTGAGATATACTTGACATAT-AATGTTGTACTAGTCCTGGGAGTGCAGCAAAATGATTTAACATAT
GC------ATATTCTGCAAAATGATTACAACAATAATTTTAGTTAAC--ATTTATCATCACACATAATTACAG-TTTTTT
TCTTA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------TGATGAGAACTTTTAAGATCTACTCTTTCTTAGCAATATTCAAACATACAGTACAGTATTGTTAA
CTATGGTCACCA------------------TGAGTATTAGCATAATT---AAAGCACTTAGGGCA-TGCTTAG--CATTT
GGTAGAACTCAACCAATATTAAC
>Tursiops_truncatus
TGT-AAATGCAGATGATAACTCCAACTATGTCAAAGGACTGTTAAAGATAAG---TGAGATAGTACCTTT---AAAAATT
TTTTAATTTTTTAATTGAGGTACACTTG--------ATATTGCATTAGTCTTAGGATTGCAGCATAATGATTTGATATAT
GT------ATATTTTGCAAAATGATTGCCACAATGATTTTAGTTAAC--ATCTATCACCACACACAGTTACAATTTTTTT
TCTTA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------TGATGAGAACTTTTAAGATCTACTCTCTCTTAGGAACTTTCAAATATACAATACACTATTGTTAA
CTATAGTCACCA------------------TGA-TGATAGCATAACT---AAGGCGCTTGGAGCA-TGCTTAG--CATAT
GGTAGAACTCAACTAATATTAAC
>Equus_caballus
TGTGAAATGAAGATGACAACTCCGGCTATGTCAAATGCTTGTTAAAGATAAG---AGAGATAGCACATAT----------
--------TTTTAATTGAAACTTACTTGACATAT-AACATTGTATTAGTTTTAGGTGTACAACATAATGATTTGATATAC
GT------ATAGACTGCAAAATAATTACCACAATAATTTTAGTAAAT--ATCCGTCATCACACACAGTTATGA-TTTTTT
TCTTG---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------TGATGAGAACTTTCAAGATCTACTC--TCTTAGCACCTTTCAAATATCCAATAGGATATTGTTAA
CTGTAGTCATCA------------------TGA--AATAGTGCCTTT---AAAGCACTTAGAGCAGTGCTTAGAACATAT
AGTAGCACTCAACAAATGCTAAC
>Ceratotherium_simum
TGTACAATGGAGATGATAACTCCAGCTATGTCAAATGATTGTTAAAGATAGG---CAAAATAGCACATTT---TTAAAAA
CTTTTATTTTTTAATTGAAACTTACTTGACATAT-AACATTGTATTAGTTTTAGGTATACAACATAATGATTCGATATAT
ATAGAGAGAGAGACTGGAAAATAATTACCACAATAATTTTAGTTAAT--ATCCATCATCACACACAGTTATAA-TTTTTT
TCTTG---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------TGATAAGAACTTTTAAAATCTACTC--TCTTAGCAACCTTCAAATATACAACACAGTATTGTTAA
CTGTAGTCACCA------------------TGA--GACATCACATTT---AAGGCACTTAGAGCACTTCTTAGAGCATAT
GGTAGCACTCAACAAATACTAAC
>Murina_aurata_feae
TGTAAAATGGAGATGGTAATTCCAGCTATGTCAAGTGGTTGTTAAAGATATG---TGAGGTAGCATATTT---AAAATTG
TTTT---CTTCCAATTGAGATGTACTTGACATAT-AACATTATATTAGTTTTAGATATACAACATGATCATTTGATATAT
GT------ATCTATTTCAAAATAATTGATACAATAACTTTATTTAAA--ATTAATTATCGTATATAGTTGCAATTTTTCT
TTTTGTGATGAGAACTTTTTATTTATATATTTTTATTGATTTCAGAGAGGAAGGAAGAGGTAGAGAGAGAGATAGAAGCA
TCAATGATGAAAGAGAATCACTCACTGATAGGCTGCCTCTTGTACTCCCCTTCCTTCCCCCATCCATGGGGATCAAGACT
GCAACCCAGGCATGTATCCTTGATCTGAATTGGATCTGGGGTCATTCAGTCCACAGGCTGACGTTCTATCCACTGAGCCA
AACCAGCTAGGGCTATGATGAGAACTTTTGAGATCAGCTC--TCTTAGCTACTTTTAAATACACATTATGGTATTGTTAA
GTATAGTCAACA------------------TGA--GATGACACATGT---AAGGCACTCAGGGCAATGCTTAG--CATAT
GGTGGCACTCAGTAAATACTAAC
>Pteropus_vampyrus
TGTAAAACAGAGAT---AATTCTAGCCATGGCAAATGGTTGTTAAAGATATG---CAAAATAGCACATTT---AAAAAAT
ATTTA--TTTTTAATTGAGATATACTTGACATAT-AACATTGTATTAGATTTAGGTGTATAACATGATGATTTGATATAT
GT------ATATGTTGTGAAATGATTACCACAATAATTTTAGTTTAA--ATTAATCATTACATATAATTAAA--TATTTT
TCTT----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------ATGAGAACTTTTAAGATCTACTT--TCTTAGCTACTTTTAAATATACAATCTAATATTGTTAG
TTATAGTTACCA------------------TGA--TTTAGCACATTT---AACGCACATAGAACACTGCTTAG--CACAT
AGTGGCACTCAGCAAATATTAAC
>Ailuropoda_melanoleuca
TTT-AAATGGACATGAAAACTACAGCTATGTCACATGGTTGTTAAAGATAAG----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TGAG-ATAAGCACATTT---AAGGCAC-TAGAACACTGCTTAG--CATAT
GGTAGCACTCCACAAATATTAGC
>Felis_catus
TGT-AAATGGAGATGATAACTACAGCTATATCACATAGTTGTTAAAGATAAT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TGAG-ATAAGCATATTT---AAGGCAC-TAGAACACTGCTTAG--CATAT
AGTAACACTCCACAAATATTAAC
>Manis_pentadactyla
AGCTCAATGGAGATATTAACTCCAGCCGTGTCACATGGTTGTAAAAGATTAG----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TAA--GACAGTGCACTT---AAAGTACTTAAAATACTGCTTAG--CATAA
GGAAGCACTCAACAAATATTAAC
>Condylura_cristata
TGTTAAATGAAACTG--AATTC--GTTATGTCACATGACTGTTAAAGGTGTA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TGA--GATAGCACATTG---AAGGTACTTACAGCAGAGATAA---CATAT
GATAGTCCTTAACAAACACTAAC
>Sorex_araneus
TGTTAGGTACAGATGATAAGTTCAACTCTCTTGTATG-TTGTTAAAGACAAG----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------AGA--AATATCACCTTT---ATGTCACTTAGAGAACAGTTAAG--CATAT
GGTGATAATTAACAAATATTAAA
>Homo_sapiens
TGTAAAATGGAGATGGCAATTCCAGTTATGTCACATGATGGTTAAATGTAAA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TGA--GGTAGCACACTT---GAGGCACTTGGAATACTACTTAG--CACAT
GGTAGCACTCAACAAGTGTTAAC



Horse36_LTR

>LTR17_EC
--------------------------------------------------------------------------------
---------------------------TGTTAAAAAATGATTAAAGAAGACAATTTAGGTGATACAAA-CAAACTTTATT
TAACAC-TTCATGAAGTGGACAGTCTCCATTTCT--CCATTTGGAGAACTGCAAAATGGGGCAGAAGGCAGGAA------
-----GCTTTTA-TAGGATAAAGAATAAAGAACAAGGAAG-----------AGAAAAATAGAAAATATCTGATTGGCTGG
GGCCACATAGTCAACCTTGTTTGGGGTGAGAAGGAACAAAAA---TAAATATAGAGCCCAGAGTTGGCTTGGCGTTTGGG
GATTGGCTGACTGGATAT-----ACTGCGTTTCTGGTCAAGTGGAGCATTTACAGGGACACGAAAGTTA--TCTAAGTTT
CGGTTTGCTGANGTGGCACCCCGGGCAGGAGTGGCTCCATCTTGGGCCTAGAAAGTTATTTCAACA--------------
------------------------------------------------
>Canis_familiaris
CATGTACC-AAGAAAGTCTAGAAG------------------------------GATCTGCCT-TCACCAAGTCACAG--
-------------ATTG---GGTT---TAT--TGAAATGACTAAAGAAGACAATTTAGGTGACACAAA-CAAACTTTA--
--ACTC-TTCATGAAGTCA-CAGTCTCCATTACCAAGAGTCCACAGAACTACAAAATAGGATGGAAGGCAAGGA------
-----ACTTTTATTGGGACAAAGAATAAAGAACAAGAGAG-----------GGAAAAATGAAAAACA-------------
---------------------------AACAAGGAACAAAGATA-TAGGTATACAGCCCAGAGCTGGCATGGTGTCTTGG
GATTGGCTACTTAGATAC-----ACTTCATTTC-AGTCAAGCAGAGGATTTACAAGGACACAAGAGTTA--TCCAAGTTT
CTGTTTCCCAATGTGGCATCCTGGGCAGGAGTGACTCCATCCTGGGCCTGGAAATGTATTACAATA---GGGTT---GAA
GCCCAGGTCTGCTGACTACACATCCAGATCC-CTTAACCTTTATGCTA
>Felis_catus
CAAGTACC-AAGAAGGTCTGGAAG------------------------------GATCTGCCT-CCACCAAGTCACAG--
-------------GCTG---GGTT---TGTG-AAAAATGATTAAAGAAGACAACTTAGATGACACAAA-TGAACTTTATT
TAACAC-TTCATGAAGTGG-CAGTCTCCATTCCCAAGGGTCCAGAGAATTTCAAAATGGAGT-GAAGGTGAGGG------
-----GCTTTTATTAGGAAAAAGTATAAAGGACAAGAAAG-----------GGGAAAATGAAAAATA-------------
---------------------------AACAAAGAACAAGGGTGTTAAGTATGCAGCCCAGAGTTGGCATGGTAT-TGGG
GATTGACTGATTGGATGT-----GCTGCATTTG-AATCAAGTGAAACCTTTATAAGGATGCGAAAGTTA--TCTAAGTTT
--GTTTCCTGATGTGGCGTCCTGGGAAGGAGTGACTCCATCGTGGGTCTGGAAATGTATTGCAATT---GGGTT---GAA
GCCCAGGTCTGCTGACTGCAGATCCAGATCC-CTTAACCTGTGTGCTA
>Manis_javanica
CAGATACC-AAGTGAGTCCAGGGG------------------------------GAGTCACCT-CCTCTGAGGCACAG--
-------------GTCA---GGCT---TGTT-AGAAGTGATTAGAGAAGACAATTTAATTTATGCAAA-TAAACTTTATT
TTACAC-CTCATGAAG-------GTTCCATTCCC-AGAGTCCACACAACTGCAAAATGGGATGGAAGGCAGGAA------
-----GCTTTCA-TAGGGCAAAGAATAAGTAAAAAGAAAG-----------GGGAGAATGGAAAATG-------------
---------------------------AGTAAGGAACAAGGAAA-TAAGTTTACAGCCCAGAGCTGACATGGCATTTGGG
GATTGGCTGGTTGGATATATTGGACTGTGTTTCTGGACAAAGGGAGCATTTACA-GGACACGAAAATTAGATCTGAGTTT
TGGTTTGCTGACATGGCAACCCGGGCAGGACC-ATTCCATGTTGGGACTATATATTTATTTCAACA---GA-AT---GAA
GCCTGGGTCTGCTGACTGCTGATCCAGAACT-CTTAACCTGTATGCTA
>Equus_caballus
CAGGTACC-AAGTGAGTCGAGGAG------------------------------AATCTGCCT-CCACTCAGTCACAG--
-------------GCTG---GGTT---TCTT-AAAAATGATCAGAGAAGACAATGTAGGTGAT----A-CAAACTTTATT
TAACGC-TTCATGAAGCAG-CAGTCTCTGTTCCCAACGGTCTGGAGAACTGCAAAATGGGGCAGAAGGAGGGAAGAACAG
GACAGGACAGGA-CGAGATAAAGAATAAGGAGAAAGAAAG-----------GGAAGAAAGGAAAATG-------------
---------------------------AACAAGGAACAAGGAAA-TGGGCACAGAGCCTAGTGCTGGCCTGGGGTTTGCG
GGTTGGCTGACTGGATAT-----TCTGCATTTCTGGTCAAGTGCAGCATTTACAGGGACACGAAATTGAG-GCTAAGTTT
CCGTTTGCTGATGTGGCATCTTGGGCAGGAACGGCTCAGTCTTGGGCCTAGAAACATATTTCAACA---GG-TT---GG-
GTCCAGGTCTGCCAACTGCAGACCCAGAACC-CTTGCCCTGCACGCTT
>Ceratotherium_simum
CAGGTACC-AAACGAGTCAAGGAG------------------------------AATCTGCCT-CCACCAAGTCACAG--
-------------GTCT---ATTT---TGTT-AAAAATGATCAAAGAAGACAATTTAGGTGAT----A-CAAACTTTA-T
TAACACTTTCATGAAGTGG-CAGTCTCTGTTCCCAAGGGTCCAGAGAACTACAAAATGGGACAGAAGGCAGGAA------
-----GCTTTTA-TAGGGTAAAGAATAAGGAACAAGAAAG-----------GGAAAAAAGGAAAATG-------------
---------------------------AATAAGGAACAAGGAAA-TAAGTATAGAGCCCAGAGTTGGCCTGGCGTTTGGG
GATTGGCTGACTGGAGAT-----AGTGCGTTTCTGATCAAGTGGAGCATTTACAGGGACACGAAAGTTA--TCTCAGTTT
CTATTTGCTGACGTGGCATCTTGGGAAGGAGCGACTCCATCTTGGGCCTGGAAATGTATTTCAACA---GG-TT---GAA
GCCCAGGTCTGCTGACTGCAGATCCAGAACA-CTTAACCTGCATGCTT
>Condylura_cristata
CAGGAACTAAAGTAAATCAAGGAG------------------------------AATTCACCT-CTATCAAGTTTCAG--
-------------GTCA---GGCC---TGT--TAAAATGATTAGTGAAGTCAATTTAAGTGATACAAATCACACTTTTGT
TAGTAC-TTCATGAAGCAGGCAGTCTCCATTGCTAAGAGTCCAGAGAACTGCAAAATGGGGTGGAAGGCTGAAA------
-----GCTTTTA-TAGGATGAAAAATAAGGAACAAGGAAGAATAGAAAACAAACAAAAAAAAAAATG-------------
---------------------------AATAAGGATCAAGGAAG-TAAGTAGAAAGCCCAGAGTTGGTTTGACTTTTGGG
GATTGGTTGATTACATGG-----AGTTTA-TTCTGATGAAGTAGAACATTTATTAAGA-ACAAAATTTA---TTAAGTTT
CCATTTGCTGAGGTGACAGCCAGAGCAGGAGCAGCTTCCTTCTAGGCCTAGAAGGTTATTTCAACA---GG-TT---GAA
GTCCAGGTCTGCTGACTATAAATCCAGAAGC-CATCATCTATATGTTA
>Uropsilus_gracilis
NNNNNNNNNAAGTGAATCAAGGAG------------------------------GATTCACCC-ACACCAAGTTACAG--
-------------GCTA---TGCT---GGTT-AAATATGATTAAAGAGGACAATTTAGGTGATAGAAA-CATACGTTAGT
TTGCCC-TTCATGAAGCAGGCTATGTCAATTTTTAAGGTTCCAGAGAACTGCAAAATAGGATGGAAAACAGGAA------
-----ACCTTAA-TAGGTTAAAAAATAAAGAACAAGAAAGAA---------GAAGTAACAAAAATTG-------------
---------------------------AATAAGAAATAAAGA-------------ACCTAGAGCTGATTTGGCGTTTAGA
GACTGACTGTGTAG---------ACTTCATTTCTG---AAGTGGGACATTGACAGGGGCACAAAATTTA--TCTGAGTTT
CCATTTGCTTA-GTGGCAGGCAGGGCAGGAAC--CTTCCTTATGAACCTAGAAAGTTATTTCAACA---GG-CT---GAA
GCTCAGGTCTTCTGACTGCAGATCTAGAATC-CATAACCTGCAAGCTC
>Sus_scrofa
CAGGTCCC-AAGTGAGTCAGG--G------------------------------GATCTGCCT-TCACCAAGTCAGAG--
-------------GCTG---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------GG-TT---GAA
TTCCAGGTCTACTGACCACAAATCCAGAACC-CATAACCTGTAAGCTA
>Bos_taurus
CAGGTACT-AAGTGACTCAAGAAG------------------------------GATCTGCCT-TCACGAAGTCACAG--
-------------GTTG---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------GG-TT---GAA
TCCCAGGTCTACTGACCACAGATCCAGCACC-CATAACCTGGATGGTA
>Myotis_myotis
CATGTACT-AAGTGAGTCTGGGAG------------------------------GATCCACCT-CCATGAAGTTACAA--
-------------GTTG---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------GG-TT---GAA
GCTTAGGTCTGCTGACTACAGATCCAAAACCCCATAACTTATCTCCTA
>Rousettus_aegyptiacus
CAGATGCT-AAATGAGTCTAGAAG------------------------------GGTGTGCCT-CTGACAGGTCACAA--
-------------GGTA---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------GG-TT---GAA
GACTAAGTCTTCTAACTATAGGTCCAGAAAC-CATAACCTGTCTGCTA
>Homo_sapiens
TAGGTACT-AAATGAGTCAGTGTAATCAATACAATATCCATGTTTGACTACACTGACTTGCCTCCCACCAAGTCACAGAT
GGGAAGTAGGGGTATTG---------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------GG-TT---GAA
GCCCAGGTCTTCTGACTACAGATCTAGAACC-TATAACCACTGTGCTA



Horse37_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
-----TTTTTCC---AGCTTT--ATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGT
TTTGATATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTACCAT-T
TTTTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAAAT----------------------------------
--------------------------------------------
>Sus_scrofa
GAA-A-ATCAGCTACTTAGCAATCT-GGGATATACATGAATCTTGAGCACTAAATCC---AACCCATTG-AGTG---TGT
GTTGAGGGGGGT---AGTTTT--ACTGAGGTATAATTGAC--AT-AACATTACA-----TCCAGGTATACAACATAATGA
GTCAATATTTATATATACTGCAAAATGATCAATAAAAT----CCAGTTAAC--ATCTACTACCATACATAGTTAAAAAAT
TTTT--CTTGAAATGAGAACTTTTAAGATAC------------------AACCCAT--TTTTA---AA----GAAAATAC
AACCTTTATATCATGTTTAGATGT-TAGCCTAATAA--AAATTA
>Bos_taurus
GAAGA-ATCAAGTTCTTGGCCATCT-GGTATATACTTGGATCTTGAGCACCGAATGC---AACTCATTG-TGTG---TGT
GTGTGTGTGTGTGTGTGTGTT--ACTGAGGTATAATTGAC--AT-AGCATTATG-----TTCAGGTATACCACATAAGGA
CTT------TCTATATATTGCAAAATGATTCC---AGTAAGTCCAATTGAC--ATCTACCACTGTACATAATTAAATTTT
TTTTTCCTTGTAATGAGAACTTTTAAGATGC------------------AACACAC--TTTTT---AA----GAAA-TAT
AACCTTTATATCATGTTTAGTTGT-TAGCTTGACAG--AAATGA
>Equus_caballus
GAA-A-ATCAACTTCTTAGCAATCT-AGGATATACCTGGGTCTTGAGCACTGAATCC---AACCTATTGTTGTT------
---------GTT---TTTTTTAAATGGAGGTATAATTGAC--AT-AACATTATATTAGTTTTAGATGTACAACATAATGA
TTCAATATTTTTATATATTACAAAATGATCACCATAATAATTCTAGTTAAC--ATCTGTCACCATACATAGTTAAAAATT
TTTTTTCTTATGATGGGAACTTTTAAGCTGC-------------------ACCCATT-TTTTT---AAA---GAAAATAT
AACC--TATATCATGTTTAGATAT-TAGCCTAACAA--AAATTA
>Ceratotherium_simum
GAA-A-ATCAACTTCTTAGTAATCT-GGGACATAGCTGGGTCTTAAGCACTGAATCC---AACCTGTTGTTGTT------
------GTTTTT---TTTTTT--AGTGAGGTAC-ATTGACATAT-AACATGATATTAATTTCAGACGTACAACATAAGTA
TTCAATA----TATATATTGCAAAATGATCACCACAATAATTCTAGCTAAC--GCCTGTCACCATACATAGTTAAAAA-T
TTTTTTCTTATGATGAGAACCTTTAAGATGC------------------AACCCATT-TTTTT---AA----GAAAATAT
AACCTATATATCATGTTTAGATGT-TAGCCTAACAA--AAATTA
>Canis_familiaris
GAA---ATCT-----GGGGCAATCTGGGGGCATACCTGGATCTTGAGCACCGAATCC-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------AACTCACTGTTTTT---AGG---AAAAATGT
AACCTCTCTATCACATTTAGATGT-TAGCCTCACAATCAAATGA
>Felis_catus
GGA-A-ATCAACCTCTTGGCAATCT-GGGACATACCTGGGTCTTGAGCACTGAATCC-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------AACTCACTGGTTTT---AA----GAAAATGT
AATCTTTATATCATGTTTAAATGT-TAGCCTAACAA--AAATTA
>Manis_javanica
NNNNNNNNNNNNNNNNNNGCAATCT-GGGACATACCTAGTTCTTGAG-ACTGAATCC-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------AACACATTGTTTCT---CA----GAAAATAC
GACCTTCGTATCATGG-AAGATAT-TAGTCTAACAA--AAATTA
>Miniopterus_natalensis
AAAAATACCGATCTCTTAGCAACCT-GGGGCATACCTGGGTTTTCAGTACGGAATCC-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------AGCTCACTGTTTTT---AA----GAAAATGC
AAC-TGTGTGTCATGTTTAGATGT-GAGCCTAATAC--AGAGGA
>Rousettus_aegyptiacus
GAA-A-ATCATTCACTTGGCAATCT-GGGACATACCTAGGTTTTAAGCATTGTATTC-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------AG-TCATTGTTTTT---AA----GAAAATAT
AACCTGCATGTCATGTTTAGATGT-TAGCCTAACAG--AACTAA
>Condylura_cristata
GAAAA-ACCAAACTCTGAGAAGTCT-AGGATAAACCTGACTCATGCGCACTGAATCC-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------AACCCCTTGTTTTT---AA----GAAAATAC
AACCTTAAGATCATGATTAGATGT-TAGGTTAACAA--AAACTT
>Sorex_araneus
GAAAA-TCCGATCTCTTAGGAGTCT-GGGACATTCTCGGGTCTTAATTACAGAATCC-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------AGCAATTTTTTTTA---AAATTAGAAGATGT
AATCTTTATGTCATATTTCCATGTTTAGCCTAACAG--ACTTTA
>Homo_sapiens
GAA-A-ATAAACCTCTTAGCAATGT-GGGACATACCTGTATCTTGAGCACTGAAACT-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------AACCCAGTGTTTTC---AA----GGAAATAT
AGTCTTTATATAATGTTTAGGTAT-TAGCCTAACAA--AAATCA



Horse38_LINE

>L1MAB_EC
----------------------------------------------------------------------------TTTT
TTTTTTTC--AGTT----------TTATTGAGATATA----ATTGACATATAACATTGTATTATGTTTAAGGTGTACAAC
ATAATGATTTGATATATGTATATATTGTGAAATGATTACCACAATGAAGTTAATTAACACATCCATCACCTCACATAGTT
ACAAATTTTTTTTTTGTTTKTGTGATGAGAACTTTTAAGATCTACTCTCTTAGCAACTTTCAAA-TATACAATACAGTAT
TATTAACTATAGTCACCATGCTGTACATTACATCCCCAGAACTTATTCATCTTATAACTGAAAGTTTGTACCCTTTGACC
AACCTCTCCCTATTTCCCCCACCCCCCA--------GCCTCTGGCAACCACCAATCTATTCTCTGTTTCTATGAGTTTGG
TTT--TTTTTTTTTAGATTCCACA--TATAAGTGAGATCATGCAGTATTTGTCTTTCTCTGTCTGACTTATTTCACTTA-
--GCA-TAATGCCCTCAAGGTTCCATCCATG---------------------------TTGTCACAAATGGCAGGATTTC
CTTCTTTTCTTTTTTATGGCTGAATAATATTCCATTG------------TATATAT--------------ATACCACATT
TTCTTTATCCATTCATCCATCAATGGACACTT---AGGTTGTTTCCA---------------------------------
--------------------------------------------
>Sus_scrofa
CAGGGCCAACCACCCGATAAAGTCTCAGTCGTT-----TTTTCCCAGGGGCAAGG---GCT---GAAGCAGCC------A
TTCCTCCT--CACTGCGATTTAT-TTATTT--TTTCA----AATGAGGTGTAACATCTATTC--ATTTCAGGTCTAGGAC
ACAATGATTTAAAAGTCGTATGC-CGGCAAAATGAGCACCGCAGTAAGTCTACTCA--ACATCTGTCCCCACACACAGTT
GGG----TTTTTTTTTCCCTCGCGCTAAGAAATTTGAAGACATCCTAACTGAGCAACTTTTAAAGTGGACAAC---GGGC
TGTCCGGCGTGGTCGCCACGCTGCGAAGCTCA--CCCAGGACTGATTGGCTTGATCT------GTCTGGACCTT------
-----------------------CCCCG-----------TCTGGCCAGCAGGAGCTGGCTCTT-----------------
-----------------CTCCGCA--CCGAGGGGCG-TCCTAAGGTA-GTGCCTTTCTCTACCCGACGGACCTCACCCA-
--GCA-TCATGCCGTCGA-GGTCCCCCCGAG---------------------------GTGTCAC-AGTGGCAAGATTTC
ATCC-----TCTTTTACGGCTGAACTATATGCCGCCA-----CCGTACACACACGT--------------GTGCCCCATT
TTCTTTGTCCA--CGTCCACGGATGGACGCCG---AGGTT----------GCCACAGTGGTT---CTTCTGGGTT----A
GCATTCTAGCTCCACGGCCGATTCAA-----AGGCAAGCGCTGC
>Vicugna_pacos
CAGTACCAAGCACCCAATTAATTCCCTATTATTTT---CCCTTCAAGGGGAAAGA---ATT---GAAGTGGCT------A
TTTTTTTTTAAACTGTGAGTCA--TTAAAAAAATATGAGGTATAGACATTTAACATTT------GTTTCAGGTGGACAGC
---ATGATTTGGTAATTGTATGCACTGTGAAATGAT---GACAGTAAGTCAAATTA--ACACCTGTCAC--CACACAGCT
ACAA---TTTTT----TTCTTGTGGTAAGAAGTTATAAGATTGATTCTCTTAGCACTTTTCAAG-CAGGCAACACGGTAT
TACTAACTCTAGTTGCCATGCTGT-----------CTAGGACTGATTTATTTTATAATTGGAAGTTTGTAC---------
-----------ATTTTGCCCCCGCCCCA---------CCTCTGCCAACCACCCATCTGTTGTT-----------------
-----------------CTCCATATTTTTAAGTGAGATCATATGGTGTTTGTCTTTT---------CTGAGTTCACTTAA
AGGCAGCAATGCCCTCAA-GGTTCATCCATG---------------------------TTGTCACCAATGGCAATATTTC
ATTC-----CTTTTTATGGCTGAATAGTATTCCACTTTGTGTGCATGAATACGTGTGTAAACCTGTGTGCGTATCACATG
TTCTTTGTCTAGTCATCCACCGATGGACACTT---AGGTT----------GCTGGAGTGGCT---GTTTTT-ATTGTCAT
TCGTTCTAGTTCAAGGACAGATTTGC-----AGACTCCTGCTGC
>Equus_caballus
CAGCAGCAAGCATCCAATTAATTCCCTATAA--------TTTTCAAGGGGAAAGG---GCT---GAAAGGGTT------A
TTTTTTT---AATCGTGATTTTT-TAATTGAAGTATA----ATTGACATATAACATTATATTA-GTTTCAGGC-----AC
TCAATGATTTGATATTTATATATATTGCAAAATGATCACGACAATAAGTCTAGTTA--ACATCCATCATGGTACATAGTT
ACAAAAATTTTT----TCCTTGTGATGAGAACTTCTAAGATCTACTCTCTTAGCAACTTTCGAA-TATGCAGTACAGTAT
TATTAACTATTGCTACCATGCTGTATATTGCATCCCCACGACTTACTTATTTTATACCTGGAAGTTTGTACATTTTGATC
CTCTTCACCC-ATTTTGCCCACCCCCCGCCCCCCTCACCTCTGGCAACCACCAATCTGTTCTCTGTATGTATGAGCTTGG
TTTTGTTTTGTTTTAGATTCCACA--TAAAAGGGAGATCATAAGGTATTTGTCTTTCTCTGTGTGACTTATTTCACTTA-
--GCA-CAAAGCCCTCAG-GATCTATCCACA---------------------------TTGTCACAAAGGGCAAGATTTC
CTT------CTTTTTATGGCTGAGTAGTACTCCATTG----TGTGTGTGCACCTAT--------------ATACCACGTT
TTTTTAATC----CATCCATCGATGGACACTT---AGGTT----------GCTGAAGTGGTT---ATTTTT-ATT----T
TCATCCCAGTTCAATGACAGATTGAACTAGCAGACT--AGTTGC
>Ceratotherium_simum
CAGCAGCAAGCATCCAATTAATTCCCTATAAT------TTTTTTAAGGGGAAAGG---GCT---GAAGTGGTT------A
TTTTTTTT--AATTGTGATTTTTCTTATTGAGGTATA----ATCGACATATTA-----------GTTTCAGGTGTACAAC
ATAATGATTCGATATTTGTATATATTGCAAAACGATCACCACAATAAGTCTAGTTA--ACATTTATCA--GCACACAGTT
ACAAAATTTTTTC---TTCTTCTGTTGAGGACTTTTAAGATCTACTCTCTTAGCAACTTCCAAA-TATGCAATACGGTAT
TATTAACTATAGTCTTCATGCTGTACATTATATCCCCAAGACTTATTTATTTTATAACTGGAAGTTTGTACATTTTCACC
CCCTTCACCC-ATTTTGCCCACCCCCTA--CCCCCTGCCTCTGGCAACCACCAATCTGTTCTCTGTCTCTATGAGCTTGG
TTTTGTTTTCTTTTAGATTCCACA--TATAAGTGAGATAATACAGTATTTGTTTTTCTCTGTCTGACTTATTTTACTTA-
--GCA-AATTGTCCTCAA-GTTCTACCCATGTTAGAACTTGGTAGAACTTGCTGCCCTTTGTCACAAAAGGCAAGATTTT
CT-------TTTTTTATGGCTGAGTAGTATTCCAGTATGTCTGTGTGTCTGTGTGT--------------GTACCACATT
TTATTTATCCATTCATCCATTGATGGACACTTAGGAGGCT----------GCTGAAGTGGTT---TTTTTT-ATT----A
TCATTCTAGTTCAGTGACAGAGTCAA-----AGACTAGAGTTGT
>Canis_familiaris
GAGCACCAAGTGTCCAATTAATTCCCTATAA-------TTTTTCAAATGGAAGGG---GTG---GAAGTGGTT-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------ATTTTT-ATT----A
TCATTCTAGTTCAATGAAAGATTCAA-----AGACCAAAGGTGC
>Felis_catus
CAGCACGAAGCATCTAATTAATTCCCTATAAT------TTTTTCAAGTGGAAGGG---GTG---GAAATGGTT-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------ATTTTT-ATT----A
TCATTCTAGTTCAATGAAAGATTCAA-----AGATCAAAGTTGC
>Manis_javanica
CAGCACCACACATCCAACTAACTCCCTATATATT----TTTTTCAAAGGGAAAGG---GCT---AAAGTGGTT-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------ATTTTC-ATT----A
TCATTCTAGTTCAGTAACAGATTGAA-----AGACT-AAGTTAC
>Myotis_myotis
CAGCACCAAGCATCCAATTAACTCCCTGTAATTT----TTTTTCAAGGTGAAATG---GTT---AAAGTGCTT-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------ATTTTT-ATT----A
TCATTCTAATTCAATGACAGATTCAA-----AGACTAAAGTTGC
>Rousettus_aegyptiacus
TGGCAATACACATCCAATTTA-TCTCTACAATT-----TTTTTCAAGGGGAAAGG---GCT---G-AGTGCTT-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------ACTTTT-ATT----A
TCATTCTAGTTCAATGACATATTCAA-----AGACTAAAGTTGC
>Condylura_cristata
CAACACCAAGCATCCAGTTCATTCTCTATAATT-----TTTTCCAAGGGGAAAGA---GCT---CAAGCGGTC-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------ACTTTTTATT----A
TCATTCTAGTTCAATGGCAGAG-CGA-----AGTCT-GAGGTGT
>Uropsilus_gracilis
GAGTACCAAGTATCCAGTTAGTTCCCTATAGTTTTTTATTTTTCAAATA-AAAGA---GCTTACGAGGTCATT-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------TTTT---ATT----A
TCATTCTAGTTCAATGACAGATCCAA-----AGTCCACAGTTGT
>Homo_sapiens
GAGCACCAAGCATCCAATTAATTCCCTATAATT-----TTTTTCAAGAAGAAGGG---GCT---AAGGTAGTT-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------ATTTT--ATT----A
TCATTCTAGTTCAGTGAGAGATTCAA-----AGACTAACGTTAC



Horse40_LINE

>L1MA9_3END
----------------------------------------------------------------------TTTT------
TCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATATACGTAT
ACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTACCATTTTTTTGTGTGT----
---------------------------------------------------------------------
>Sus_scrofa
GGGTATCATGTCACATGGCCTCCCAATTCCTGGACCCCAGCTAAAGCCAG---CCTGCTGATGTCTT---TTTT--TCCT
TCCAGTGTGGTTGACATGTAATTGACATAC-ATCACTGTGTAAGTTTAGGGTGTACAGCTTGATGATGAAACTGAC--AT
AGATTGTGAAGTGATGACTGCAACAAATTTAGTTAAT--ATCCCTCATCTCATCTGGA---------------------T
GAGCTGAAGTCTT---AGCCCGAGCTCCTGGTTTCCTACATCCCTAGGAGGTGACACATTTCTTCTTGC
>Tursiops_truncatus
GGGCATCACGTCATGTGGTCTCTTGATTCTTGGACCCCAGCTGACGGCAG---TCTGCTGACATTTT---TTTT---TCT
TCCTGTTTTATTGAGATATAATTGACATCC-ATCACTGTATTAGTTTAAGGTGTGCAGCGTGATGGTTTGACTTAC--AT
ATATTGTGAAATGATTACTGCAATAAATTTAGTTAAC--ATCCATCATGTCATATAGA---------------------C
GTGCTGAAGTCTT---AACCTGAGCCCCTGGTGAGCTAAGCCCCTAGGAGGTGACAAATTTCTTGTTGC
>Equus_caballus
GGGTATAATGTCACGTGGTCTCCAGATTC--------CAGCTAAAGCCAG---CCTGCCGAAGTCTT---TTTT-----C
TCCAGTTTTATTGAGATCTAATTGACATAC-ATCACTGTATACGTTTAAGGTGTACAGCATCATGATTTGATTTCC--AT
GCGTTGTGAAATGATTACCAGAATAAGTATAGTTAGC--ATCCATCATCCCACGTAGA---------------------C
CTGCTGAAGTCTT---C-CCTGAACCCCTGGTCTGCCAAGCCCCTCTGGGAAGGCACATTTCTTCTTGC
>Ceratotherium_simum
GGGTATAATATCATGTGGTCTTTGGATTCCTGGACCCCAGCTGACGCCAG---CCTGCTGAAGTCTT---TTTTTTTCCC
TCCAGTTTTATTGAGATCTCATTGACAGAC-ATCACTGTGTAAGTTTGATGTGTACAGCATCATGATTTGACTTAC--AT
GTATTGTGAAATGATTACC---ATAAGTTTAGTTAGC--ATCCATCATCCCGTATAGA---------------------C
CTGCTGAAGTCTC---A-TCTGAGCCCCTGGTCTGCCAAGACTCTACAGGATGACACATTTCTTCTTGC
>Canis_familiaris
GGGTCTAAAGTCACATGGCCT-TGGTTTCCTGGACCCCAGCTGATGCCAG------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------T
CTGCTGAAGTCTT---AACCTGAGCCGATGG----------------GGGGTGACACATTTCTTCTTGC
>Felis_catus
GGGTATGATGTCATGTGGCCT-CGGTTTCCTGGACCCCAGCTGACGCCAG------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------C
CCACTGAAGTCTT---AACCTGAGCCTGTGG----------------GGGAAGACACATTTCTTCTTGG
>Manis_pentadactyla
GGGTTTT---TCAC-TGGTCTTCAGATTCCTGGACCCCTGCTGAAGCCAG------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------G
CTGCTGACGGCTT---AACCTGAGCCCCTG-------------------GGGGATATCTTTCTTTGGGC
>Myotis_myotis
GGGCAGCATGTCACGTGGTCTTCA-ATTCCCGGACCCCAGCTGAAG--AG------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------C
CAGCTGAAGTCTG---CGCTTGAGACCCAGCCTT----AGGCCCCAGGGGATGACACATTGTTTCCTGC
>Rousettus_aegyptiacus
GGGTAAAATGTCACATGGTCTCTGGATTCCTGGACCCCAGCTAAAGCCGG------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------T
CTGCTGAAGTCTT---A-TCT-AGCCTGAGTC-TGCTAAGCCCCTAGGAAATGACA--TTT-TTCCTGC
>Condylura_cristata
GGGTGTGATTTCATGGGGTTTCCAGAGTCCTTGACCTCACCCGAAGCCAG------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------C-CCC-AACCTCTGGGCTTCAAAGCTCCCAGAGGATGACCCAT---GTCTTGC
>Scalopus_aquaticus
GGATATGGCGTCGTGGGGTTTCCAGAGTCCTCGACCTCAGCTGAAGCCAG------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------C
CTGCCGAGG-CCC---A-CCCGAACCCCTGGTTTGTGAAGCCCCCAGAGGAGGACACAT---TTCTTGC
>Homo_sapiens
GGGTATGATGTCACTTAGTCTCCTGATTCCCAGG-CTCA--TGAAGCCAG------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------A
CTGCTGAGGACTT---AACT---GCCCCAGATTTGTCAAGCCCCTAGGGGATGACACATTTTTTCTTAC



Horse47_LINE

>L1MA9_3END
-------------------------------------------------------------------TCAAAACATCACG
TTGTACACCTTAAATATATACAATTTTTATTTGTCAATTA-TACCTCAATAAAGCTGGAAAAA-----------------
------------------------------------------------------------
>Sus_scrofa
GTCTTCTCAACTCTAGGTATTTCAGCATGAAA--CCTAAGTTTGCTTCTC---GGGAATCTGAT---------------G
CTGTACACCTTAAGCTTACAC-AGGGATGTGTGTCAATGA-TGTCTCAGTAAAACTGG-----GGG---GGACATTTGGC
---ATCGCCATGTCCAGCTGAGCAACCA----CTGGAAACTGACAAGCCCCGAGT-GGCA
>Bos_taurus
GTCTTTTCAACTCTA----TTTCAGCATGAAAAGCAAGGGTTTGTTTATC---CAGAATTTGAT---------------G
CTGTATACCTTAAACTTATAC-AGTGATGTATGTCAATTA-TTTCTCAATAAAACTGG-----GAA---AAGATTTTGGT
---ATCACTGTGTCCAGCTGAGCAACTG----CTGGAAATGGATGAAACCTGAGC-AGAA
>Equus_caballus
ATCATTTCAACTCTA----TTTCAGCATGAAAAGCAAGAGTTTGTCTATC---AAGAATTTGAT---------------G
CTGTACACCTTAAACTTATGC-AGTGATATATGTCAATTA-TTTCTCAATAAAACTGGG-GAAAAA---ATGAATTTGGT
---ACTACCATGCTCAGCTGAGCAACCA----CTGGAAACTGACATGACCTGAGC-AGAA
>Tapirus_indicus
ATCATTTCAACTCTAAGTATTTCAGCATGAAAAGCAAGAGTTTGTTTATG---AAGAATTTGAT---------------G
CTGTACACCTTAAACTTATAC-GGTGATGTATGTCAATTATTTTCTCAATAAAACTGGAAAAAAAA---AAGAATTTGGT
---ATCACCATGCCCAGCTGAGCAACCA----CTGGAAACTGACATGACCCAAGC-AGAA
>Canis_familiaris
GGCTTCTCAACTGTGAGTATTTCAGCCTGGAAAGCAAGAGTTTGTTTATC---AAGAATTTGGT----------------
--------------------------------------------------------------------------------
---CCCATCAGGCCCAGCTGAGCAAGCA------GGG--------------GAGC-AGAA
>Felis_catus
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGCAAGAGTTTGCTGATC---AAGAACTTGGG----------------
--------------------------------------------------------------------------------
---ATCACCACGCCCAGCCGGGCAAGCA----CGGGAGA-----------------AGAA
>Phataginus_tricuspis
NNNNNNTCAACTATAACCCTTTCAGCATGAAAAAC-AGGGTTTGTTTTTC---ACCAATTTGGT----------------
--------------------------------------------------------------------------------
---ATCACCATGCCCAGCTGAGCAACCG----CCGGAAACTGAAGTGACCTGAGTACGAG
>Myotis_myotis
ATCATTTCAACTATAATTATTTCACCATGAAAAACAAGGGTTTGTTTATC---AAGAATTTGGT----------------
--------------------------------------------------------------------------------
---ATCACCATACTCAGCTGAGTAACCAACCACTGGAAACTGACATAACCTGAGC-AGAA
>Rousettus_aegyptiacus
ATCATTTCAACTATAAGTATTTCAGAATGAAAAGCAAGAGTTTGTTTATC---AGAAATTTGGT----------------
--------------------------------------------------------------------------------
---ATCA---TGCCCAGCTGAGCAACCA----CTGGAAAATGACATGACCTGAGT-AGAA
>Condylura_cristata
ATCATTTCAGCTCAATGTATTTCAGCA-GAAATGCAAGGGCTTGTTTATC---AAGAGTTCGGT----------------
--------------------------------------------------------------------------------
---CTCACCATGCCCAACTGCACCACCA----GTGGAAAGTGGCATGACCTGCGT-AGAA
>Sorex_araneus
ACAATTTCAATTGTAAAGATTTCAACATGAAAAGCAAGAGTTTGTTTATC---AAGAATGTGGC----------------
--------------------------------------------------------------------------------
---ATTATCATACCCAACTGAGCAACAA----CTGGAAACTGACATGACTTAAAC-AGAA
>Homo_sapiens
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAAGGAAAGAGCTTGTTTATC---AAGAATTTGGT----------------
--------------------------------------------------------------------------------
---ATCACCAAGCCCAGCGGAGCAACCA----CTGGAAACTGATATGATCGGAGC-AGAA



Horse53_LINE

>L1MAB_EC
--------------------------------------------------------------------------------
-----------TTTTTTTTTTTCAGTTTTATTGAG-----ATATAATTGACATATAACATTGTATTATGTTTAAGGTGTA
CAACATAATGATTTGATATATGTATATATTGTGAAA--------------------------------------------
----------------------------
>Equus_caballus
GATATTTAAGGTGATTTTGTGTGTTTAT-CAGGTT--GATGTCTAAA-TAAGG-GGATAATTGATGCTATC---TCAGCT
TCTAAATT---------AAAAAACAATTTATTGAG-----GTACAATTGAC-------ATTATGTTA-GTTTCAGGTGTA
CAACACGATGATTCTAT----------------------TCAACTTTTAAATT---TTTATCATAACATGCTATGAATCA
CTTTTAA-AGTTGAATATGGCAAGAGAA
>Ceratotherium_simum
GATATTTAA-------TTGTCTGTTTAT-AAGGTTTGTATTTCTGAA-TAAGATGAATAATTGATGCTATC---TCAACT
TCTAAATT---------AAAAAAAATTGTATTGAG-----GTATAATTGACAAATAACATTATATTA-GTTTCAGGTTCA
CAACATAATGACTCGAT----------------------TCAACTTTTAAATT---TT--TTGTAACACACTATGAACTA
CTTCTAA-AGTTAAATAAAGCAAGAAAA
>Myotis_myotis
ATTATTTAAAGTAATTGTATTTGTTTAT-AAGCTTTAAATATCTAAA-TAATACAAATAAT----GCTATC---TCAACT
TCTAGATG----------CAAATTTTTTAATTGAG-----GTGTAATTGACAAGTAACATTATATTA-GTTTCATGTGCA
CGACATAATGATTTGGT----------------------TCATCTTCTACATT---TTTAGCCCCAAACACTGGGACTCC
CTTTTAA-AGTTGAATAGGGCAATAAAA
>Rousettus_aegyptiacus
GGTATCTAAAGTAATTGTGTCTGGTT-T-AAGGTCTGCATCTCTAAC-TAAGACAAACAATTGATGCCATC---TCAACT
TTTAAATG---------TAAATTATTTTTAATGAAGGTATGTATAATCGACAAATAATATTATGTTA-GCTTCAGACGCA
TACCATAATGATTTGGC----------------------TCAAATTCTGAATT---TTTATCTCAACGTGATAGGAACCC
GTTTCAA-AGTTAAATAGGACAAGGGAA
>Canis_familiaris
TATATAAAAGGAAATTATGTCTGTTTATAAAGGTTTGTATCTC-----TAAGATGAGCGA-----GCTATC---TCATCT
TCTAAAAT------------------------------------------------------------------------
--------------------------------------------------------TTTATCATAACCCTCTAGGAACCA
CATTTGA-AGTTGAATAGGGCAAGAAAA
>Felis_catus
TATATTTAAGATAACTGTGTCTGTTTAT-AGGGTTTGTATCTCTGAGACAAAATAAGTGA-----GCTATC---TTGTCT
TCTAACAT------------------------------------------------------------------------
--------------------------------------------------------TTTATCATAACCCACTATGAGCCA
CATTTAA---------AGGGTAAGAAAA
>Manis_pentadactyla
GATATTTAAGGTAATTGTGTCT-------AAGGTTTGTATCTTT----TAAAA--GATAATTGATGCTCTC---TCAACT
TCTAAAAT------------------------------------------------------------------------
--------------------------------------------------------TTTATCCTGACACATTATGTACCA
CTTTTAA-AGTTGAATATGGTAAGAAAA
>Sus_scrofa
AATATTTAAAGTAGTTTTGT--GTTTAC-AAGTTTTAAGTCTCTAAATTAAAAGGACTAATTGACTCTAGG---TCAACT
TATAAATT------------------------------------------------------------------------
--------------------------------------------------------GTTAATATAGCACTCTATGAACCA
CTTTTAAGAGTTGAGTAGGGCAAGACAG
>Bos_taurus
GACGCTTAAAGTGATTGTGTCTGTTGAT-AAGATTTGAGTCTCAGAA-TAAGAGGAATAATTGATGCTACT---TCCACT
TCTAAATT------------------------------------------------------------------------
--------------------------------------------------------GTTAGCATAACATACCCTGAACCA
TTTTTAA-GGTTGAATAGGGCAAGAAAA
>Condylura_cristata
GGTG-CTGAGGTCAC--TGCTGGCTGAT-AAGGCCTGG-----TAAA-GAAGACGGGTCACCGAGACTGGC---TCAACT
TGCACGTT------------------------------------------------------------------------
--------------------------------------------------------TTTATCTTTGTGCACCATGCCCCA
CTTCTGA-AATGGAACGGGGCAAGAAGA
>Sorex_araneus
AACATTTAAGGCAATTGTTTCT-------AAGGTTTATATATCTCCTAAATAGCAAATAACTAAGGTGATA---GAAACT
TTTAGCTT------------------------------------------------------------------------
--------------------------------------------------------TTTATTAGAGTTCATTGTGAAGCA
--------AGC---------CAATGGGA
>Homo_sapiens
GATACTTAAAGGAATTGTATCTGTTTAT-AAGGTTTATATCTCTACA-TAAGATAAACAACTGATGCTGTT---TCAACT
TCTGAATT------------------------------------------------------------------------
--------------------------------------------------------TTTATTATAACACACTTAAACTTA
TTTTTAA-ACTTGAATAATGCAAGAAAA



Horse54_LINE

>L1MAB_EC
--------------------------------------------------------------------------------
TTGTAACTATGTGAGGTGATGGATGTGTTAATTAACT----TCATTGTGGTAATCATTTCACAATATATACATATATCAA
ATCATTATGTTGTACACCTTAAACATAATACAATGTTATATGTCAATTATATCTCAATAAAACTGAAAAAAAAAAA----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------
>Equus_caballus
CTCCCTTTCTGAAGGTCAGCTGACATGGAAACTTAACTACATTTGC-AAAATCCCTTC---AAAATAATAACTGTGC---
------------ATGCTGATAGATA------TTAACTAGACTTATTATGGTGATCATTTTGCAACATACACAAATATTGA
ATCATTATGTTGTACACCTGAAAC-TAATGTACTATTATATGTCAATTATATCTCAGTTAAA-----------------A
AAATATTAACTTTGT---TAG-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------CATTTGATAGAATAACAGGGAGAA-AGGGTATGT------------
----------------------ACACCA-CAGGCTGG
>Ceratotherium_simum
CTCCCTCTCTGAAGGTCAGCTGATGTGAAA-CTTAACTACATCTGC-AAAATCCCTTC---AAAATAATAACTATGT---
------------ATGGTAATGGATG------TTAACTAGATTTATTGTGGTGATCATTTTGCAACATACACAAATATTGA
ATCATTATGTTGTATGCCTGAAAC-TAATGTAATGCTATATGTCAATTATATCTCAATCAAA-----------------A
AAATAATACTTATAT---TAG-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------TATTTGAT----TAACTGGGAGAA-GGGGTATGT------------
----------------------ATACCA-TGGGCTGG
>Condylura_cristata
CTTGCT--------ATCAAGCACTAT------TTAATTTCATCTGC-AAAATTTCTTC---AAAATAATGATCTTGT---
------------GTGAAGATGGATG------TTAACTCGATGTATTA---TAACCAGTTCACAATAAATACAAATATTAA
ATCATTAAATTGTACACATAAAAC----------------------ACATAGCTCCACTGAA-----------------A
AA-TA-GAGCTATGT---TAA-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------TGTTTGATTGAATAACTGGGAGAA-GGGGAGTAA------------
----------------------ATATCA-T-GCTTGG
>Solenodon_paradoxus
CTCCCT-----AAGGTGAACTGATGTAGAGCCTTACTTACATCTGC-AGAATCCCTTC---AAGATATTAACTATGT---
------------GTGACAATGGATG------TTAACTAGACTTATTGTAGTGACCATTTCTCAGTAAGTACAAATATCAA
ATCATTATG-TGTACCCCTGAAAC---AAACAGTGTTATATGTCAATTATATCTCAACTAAA-----------------A
ATAT-----TTATAT---TAC-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------CAT----TTGAAGAACTGGGAAAA-TGAGTGGGT------------
----------------------ACACCAGG-GGCTGG
>Canis_familiaris
CTCCTTATCTTAGAGTCAATTGATGTGGAACCTTAGTTATTTCTGC-AAAATCCTTTC----------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------A
-TGTAATGCCTATGT---TAG-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------TGTTAGGTTGAATACTCGGGAGAA-GGGGTGTAC------------
----------------------ATACCAAT-GGCTGA
>Felis_catus
TTCCCTATCGTAGGGTTAATTGGTGTGGAACCTTAATTACAACTGT-GAAATCCCTTC----------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------A
GAATAATACCGATGT---TCG-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------TGTTAGATTGAATAACTGGGAGAA-AGGGCGTAC------------
----------------------ACACCAAT-GGCTGA
>Manis_pentadactyla
CTCACTATCTTAAGATCAGTTGATGTGGAAACTTAATTACATTTGC-AAAATCCCTTC----------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------C
AAATAATACCTATAT---TAG-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------TGGGAGAA-GGAATATGC------------
----------------------ATACCA-TGGGATGG
>Sus_scrofa
ATCCCCATCTTAAGATCAGCTGGTGTGGAACCTTAATTATATCTGC-AAAATCCCTTC----------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------A
AAATAGTACCTACTG---TAG-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------TATTGGATTGAAAACCTGAGAGAA-AGGGTGTGT------------
----------------------ACCCCA-TGGGCTGG
>Bos_taurus
CTCTCTGTTTTAAGGTCCACTGATATGGAACCTTAATTACATCTGC-AAAATCCCTTC----------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------A
AAATATCATCTA-AT---TAG-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------TGTTGCATTGGATAACTAGGAGAA-GGGGTGTGT------------
----------------------CTCCCA-TAGCCTGG
>Myotis_myotis
CTCCCTTTCTTAAGGTCAATTGATGTGGAACTTCAATTAGATTTGC-AAAACCCCTTC----------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------A
AAATAATAACTATAT---TAG-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------TGCTTGATTGAATGACTGGGAGAA-GGGGCGCAT------------
----------------------ACACCA-TGGGCTGG
>Rousettus_aegyptiacus
CT--CTATTTTAAGGTCAACTGATGTGTAACCTATATTACATCTGCAAAAATCTCTTC----------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------A
A---AATACCTATAT---TAG-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------TGT----TTGAATAACTGGGAGAAGGGGGTGTGT------------
----------------------ACACCA-TAGGCTGG
>Homo_sapiens
CCCCCTCTCTTTAGGTCATGTGATATGGAACCTTAATTATATCTAC-AAAATCCCTTT----------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------A
ACATAATATCTATAT---TAGGCCAGGTGTGGTGGCTCACACCTGTAATTCTAGCACTTTGGGAGGCCGAGGTGGGCAGA
TCACCTGAGGTCAGGGGTTTGAGACCAGCCTGGCCAACATGGCAAAACCCCATCTCTACTAAAAATACAAAACTTAGCAG
GATGTGGTGGTGAATGCCTGCAATCCCAGCTACTTGAGAGGGTGAGGCAGGAGAATCGCTTGAACCCGAGAGGTGGAGGT
TGCAGTGAGCCGAGATTGTGCCACTGCACTCTGGCCTGGGCAATAGAGTGAGAACCATGAGGCTCCATCTCAAAAATAAA
TAAATATATAAATAAATAATACTACCTGTATGAGTGTCTGATAGAATACCTGAGAGAA-AGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTGTGTGTGCATACCT-GGGGCTGG



Horse55_LINE

>L1MAB_EC
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TTTTTTTTTTTCAGTTTTATTGAGATATAATTGACATATAACATTGTATTATGTTTAAGGTG
TACAACATAATGATTTGAT-------------------------------------------------------------
-------------------
>Equus_caballus
GCT-ATACTA----------------------------------------------------------------------
-----AAAGAAAT-TATTTGT-----------------------------------------------------------
------------------------------------------------TGTTTACCTGAAATTAAAA-TTTAATGAGATG
---TCTTATATTTTC----TTTT--------CTTTTATTAAGGTATAACTGACATATAACATTGTATTC-GCTTTA-GTG
TACAACATA-------------TCC--TATATTTTC---AATTTGGGTATGGGTCTCT-------ATAAATACCTCT--G
TTCTGATAAGAC-ATATCA
>Tapirus_indicus
GCTTATACTA----------------------------------------------------------------------
-----AAAGAAAT-TATTCAT-----------------------------------------------------------
------------------------------------------------TGTTTACCTGAAATTAAAA-TTTAATGCGATG
---TCCTATATTTTA----TTTT---------TTTTGTTAAGATATAACTGACATACAACATTGTAACA--TTTTAGGTG
TACAACATA-------------TCC--TATATTTTC---AATTTGGGTAAGGGTCTCT-------ATAAATACCTCT--G
TTCTGATAAGACTTTATCA
>Myotis_myotis
GCTAATACTA----------------------------------------------------------------------
-----AAAAAAATAAATAAAT-----------------------------------------------------------
------------------------------------------------TGTTTGCCTGT------------------ATA
---TCCTATATTTTC----TTCT-------TTTATGTCTAAGATATAAATGACATATAACA---TGTTA-GTTTTAGGGA
TACACCATA-------------TCTGATATTTTTTC---AAATTGTGTGAGGGTTATTTATAGAGATAGATACCTCT--G
TTCTGATAAGAT-ATATCA
>Rousettus_aegyptiacus
GTTTACAC------------------------------------------------------------------------
-----TAAAAAAA-TATTCAT-----------------------------------------------------------
------------------------------------------------TGTTTACCTGAAATTCAAATTTTAATCGGTTG
---TCCTATATTTTC----TTTTACACGTCCTTTTTTCTGAGCTATAATTGAAATATAACATTATATTA-GTTTTAGGTG
TACACCATA-------------TCT--GATCTTTTC---AATTTGGGTGATGGTCACTTATAGTG-TG-ATA---CT--G
TTCAGATAAG---ACATTA
>Canis_familiaris
AACTATTT------------------------------------------------------------------------
-----AAAAAAAT-TATTCAC-----------------------------------------------------------
------------------------------------------------CGTTTACCTGAAATTCGAA-TTTAATGGGATG
---TCTTATA-TTTC-----------------------------------------------------------------
---------------------------------------TATTTGGGTGAGGGTCTCT-------ATAAATATCTCT--C
TTCTGATAAGAT-CTATCA
>Felis_catus
GCTTATCCTA-----------------------------------------------------------AAAA---AAAC
AAAACAAAAAAAC-TATTCAT-----------------------------------------------------------
------------------------------------------------TGTTTACCTGAAATTCAAA-TTTAATGGGAGG
---TCTTATA-TTTC-----------------------------------------------------------------
---------------------------------------TATTTGGGGCAGGGTCTCT-------ATAAATATCCCT--G
TTCTGATAAGAT-ATATCA
>Manis_pentadactyla
GCTTATAC------------------------------------------------------------------------
-----TAAAAAATACATTCAT-----------------------------------------------------------
------------------------------------------------TGTTTATCTGAAATTCACA-CTCCATGGGATG
---TCCTATATTTTC-----------------------------------------------------------------
---------------------------------------TATTTGGATGAGGGTCTCT-------ATAAACACCCCCTGG
TTCTAACAGACT-CTATCA
>Sus_scrofa
GTGTATAC------------------------------------------------------------------------
-----TAGAAAGT-TATTCAC-----------------------------------------------------------
------------------------------------------------TGTTTACCTGAAATTTAGA-TTTAATGGGATG
---TCCTACATTTGC-----------------------------------------------------------------
---------------------------------------TATTTGGGTGAGTGTCTCT-------ATAAATACTCCT--G
TTCTGATAAGAA-AAATCA
>Bos_taurus
GTTTATAC------------------------------------------------------------------------
-----TAGAAAAT-TATTCAC-----------------------------------------------------------
------------------------------------------------TGTTTACCTGAAATTCAAA-TTTAATGGGATG
---TCCTATATTTTC-----------------------------------------------------------------
---------------------------------------TATTTGGGTGAGTGTCTCT-------ATAAATACCCCT--G
TTCTGATAAGAC-ATATCT
>Condylura_cristata
CCTCATACAGCCCCTGCACCTCTGGCCTGTACCCCAGTTCTGTATGCATAAATAAATAAATCTTTAAAAAAATAAAATAA
AGAAGAAAGAAAA-AATTCAT-----------------------------------------------------------
------------------------------------------------TGTTTATCTGAAATTCTAA-CTTAATAGCATG
---TCCTATATTTTT-----------------------------------------------------------------
---------------------------------------CATTTGGATGA--GTCTTT-------ATAACTAGCACT--G
CTTTGATCAGAC-ATCTCA
>Erinaceus_europaeus
GCTTATACTG----------------------------------------------------------------------
--------AAAGA-AATGTATGTACACGCGCTTGCAGGCACACACACACACACACACACAAAGAGATAGAGAGAGACACA
CACACACACACTTGAAGTTCTCTAATGCCTGATACTTTTTTTTTTAACTGTTTACCTGAAATTCAAA-TTCAGTGGCATG
---GCATAGATTTCC-----------------------------------------------------------------
---------------------------------------TATTTGGATGAGGGATTCTAAAAAA-ATATATATATAT--G
ATTTAATACAACATTGTCA
>Homo_sapiens
ATTTATATTT----------------------------------------------------------------------
--------AAAAT-CATTTAT-----------------------------------------------------------
------------------------------------------------TGTTTA-TTGATATTCAGA-TTCAATCAAAAA
---TTCTATATTTTC-----------------------------------------------------------------
---------------------------------------TATTTGGGTGAAGGTCTCT-------ATAAATACCCCT--G
GTCTGATAAGAC-ATATCA



Horse57_LINE

>L1MAB_EC
--------------------------------------------------------------------------------
AAAGTTGCTAAGAGAGTAGATCTTAAAAGTTCTCATC-------------------ACAMAAACAAAAAAA---------
--------------AAATTTGTAACTATGTGAGGTGATGGATGTGTTAATTAACTTCATTGT---GGTAATCATTTCACA
ATATATACATATATCAAATCATTATGTTGTACACCTTAAACATAATACAATGTTATATGTCAATTATATCTCAATAAAAC
TGAAAAAAAAAAA-------------------------------------------------------------------
----------------------------------------------------------------------
>Equus_caballus
ATAATTTCACA-TTTTTCA----AAGGCTGCTGTT-GATGCCATTAATTTCCACGGGT---AAAGATCATCTCATAA---
-----------GAGAGTAGAGCTTATAAATTCTCATC-------------------ACAAGA--AAAGAAA---------
--------------AAATTTGTCACTATGTGTGGTGATGGA--AGTTAATTAGACTTATTGTGGAGGTGATCATTTCACG
ATGTATACAAATATTGAATCATCATGTTGTACACCTGAAAC-TAATATAATATTGTATGTCAATTATGTCTCAATTGAAA
AACA------------AAAGATCATCTGGGAA---ATGTTTACAG-----------------------------------
-------------------TTTTTTT----------CTAGACAAGGAGAGAC-AAAGGTAACTCAGGTAA
>Ceratotherium_simum
ATAATTTCACA-ATTTTAA----AAGGCTGCTGTT-GCTGCCATTAATTTCCATAGGT---TAAGATCATCTGGTAA---
-----------GACAGTAGAGCTTATAAGTTCTCACC-------------------CCA-----AGAAAAA---------
--------------AAATTTGTCACTGTGT--GGTGATGGA--AGTTAATTAGACTTATTGT---GGTGATCATTTTGCA
ATGTATACAAACATTGAATTAT-------------------------TAATGTTTTATGTCAATTGTGTCTCACTTAAAA
----------------AAATACCATCTGGGAA---ATGTTTAAAC-----------------------------------
-------------------TTTTTTC----------TGAGACAAAGAGAAAC-AAAGGTAACTCAGGTAA
>Myotis_myotis
AAAATTTACCA-TTTTAAA----AAGGCTGCTGTG-GCTGCCATTCATTTACATAGAT---AAAGAGCATCTGGGAA---
-----------GAGAGTAAATCTTAAAAGTCCTCATCTTCTCTCTCTCTCTCTTTTACAGACACACACACACACACACAC
ACACACACACACACACAGTTGTAACTATGGGAGATGATGGA--TGTTAACTGGACTCACTGT---GGGGATCATTTTGCA
ATATATACAAATATCACATTGTTACACTGTACACCTGAAAC-TAATATAATGTTATATGTCAACTATATCTCAATTAAAA
AAAAAAA---------AAAGATCACCTGGGAA---ATGTTCAAAC-----------------------------------
-------------------TTTGTTC----------TGAGATAAG-AGGAAC-AAAGGTAACGCAGGTAA
>Rousettus_aegyptiacus
AAAATTTAACA-TTTTTAA----AAGGCTGCTGTT-GCTGCCATTAATTTCCATAAGC---AAAAATCATCTGGAAA---
-----------GAGAGTACATCTTAAACATTCTCAGT-------------------GCAAA---GAAATTA---------
--------------AAATTTGTAACTGTGTGTGGTGATGGA--TGTTAACTAGACTTATTAT------GATCATTTTGCA
ATATATACAAATATCGAATCATTATATTGTACACCTGAAAC-TAATATAATGTTATATATCAAATATATCTCAAGAAA--
----------------AAAGACCATCTGAGAA---ATGTTTAAAC-----------------------------------
-------------------TTTTTTC----------TGAGACAAAGAGAAGC-AAACATAACTCAGGTAA
>Canis_familiaris
AAA---CAACA-TTTTTAA----AAGGCTGCTGTT-ACTGCCATTAATTTCCACAGGT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------AGAGGTCACCTGAAAT---ATGTTTAAACATTTGTTGTTGTTGTTGTTGTTGTTATTTTGCTTT
TGTTGTTTTTTTTAATTTTTTTTTTTTGGGGGGGGGTGAGACAAAGAGATAC-AAAGGAAACTCAGGTAA
>Felis_catus
ATAATTTAACA-TTTTTAA----AAGGCTGCTGTT-GCTGCCATTAATTTCTATAGGT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------AAAGAGCGCCTGGGAA---ATGTTTAAAT--------------------GTGGTTTTTTGTTTG
AGTGGGGTGTTTTTAGTTTTGTTTTC----------TGAGACAAAGGGAAAC-AAAGGTAACTCAGGTGA
>Manis_pentadactyla
ATAATTTAAC-------------AAGGCTACTGCTGGCTGCCATTAAATTCCACAGGC----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------AAAGAGCACCTGGGAA---ATGTTTAAAG-----------------------------------
--------------------CTTCTT----------TTAGACG---AGAAAT-AAAGGTAACTCGGGTAA
>Sus_scrofa
ATCATTTAACA-TTTTTAA----AAGGCTGCTGTT-GCTGCCATGAGTTTCCGTAGGT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------ACAGACCATCTGGGAA---GTGTTTAAAC-----------------------------------
--------------------TTTTTC----------TGAGACAAAGAGAAAC-AAAAATAACTCAGGTGA
>Tursiops_truncatus
ATAATTTAACATTTTTTTA----AAGGCTGCTGTC-GTTGCCATTAATTTTCATAGGT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------AAAGATCACCTGGGAA---ATGTTTAAAC-----------------------------------
-----------------TTTTTTTTT----------TGAGACAAAGAGAAAC-AAAAATAACTCAGGTGA
>Condylura_cristata
ACAGTTTAACT-TCCTTTATTTCCAGGTTGTTCTT-ACTGCTATTAATTTCCAAAGGT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------TAAGATACTCTAGAAA---ATGTTTAAAC-----------------------------------
---------------TTTTTTTTTTT----------TCAG------AGAAGC-TAAGATAACTCAGGTAA
>Sorex_araneus
ATGATTTAACATTTTTTTA----AAAGACACTGTT-GCTGCCATTCATTTCTGTAGGT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------AGCAGTCACTTGGGAA---ATGCTTAAAC-----------------------------------
----------------GTTTTTTTCC----------TTTGAAACGGAGAAGA-AAATATAA-TTTAGTAA
>Homo_sapiens
ATGATTTAACA-TTTTTTA----AAGGCTGCAATT-GCTGCCGTTAATTTCCATAGGT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------AAAGATCATCTGGGAA---ATATTTAAAC-----------------------------------
-------------------GTTTTTT----------TGAAACAAAGAGCAACAAAAGGTAACTCAAGTTT



Horse59_LINE

>L1MAB_EC
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------TTTTTTTTTTTC
AGTTTTATTGAGATATAATTGACATATAACATTGTATTATGTTTAAGGTGTACAACATAATGATTTGATATATGTATATA
TTGTGAAATGATTACCACAATGAAGTTAATTAACACATCCATCACCT---------------------------------
-------------------------------------------
>Equus_caballus
ACAAAAGAAGAAAGTCAG--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------GCAGAAAAGCAATAAACTTTCTTATAC---ATGAC-----AAATAAAA-TTATTTT---------------
--TTTTATTGAAGTATACTTGACATACAACATTATACTA-GTTTCAGATGTACAACATAACGATTCGATATTTGCATACA
TCGTAAAATGATCACCACAATAACTCTAGTTA--ACATC-----------AGATTTAAAAACAATTTTT---AAGTTCCC
TCAG-CTCTAATAAGAGATGCATCCCATGGCCATCTCCACCAC
>Ceratotherium_simum
ATAAGAGAAGAAAGTCAG--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------GAAGAAAAGCAATAAACCTTCTTATAC---ATGGCTT---AAATAAAACTAATTTT---------------
--TTTAATTGAAGTATAACTGACATACAACATTATACTA-ATTTCAGATGTACAACACAATGATTCAATATTTGTATATA
TTGTGAAATGATCACCACAATAACTCTAGTTA--ACATC-----------AGATTTAAAAACAATTATT---AAGTTCCC
TCAG-CTCTAACAAGAGATGCATCCCATGACCATGTCCACCAC
>Myotis_myotis
AGAAAAGCAGAAAGTCAGG-------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------GGGGGAAAGCAATAAAAATCCTTATGC---ATGACTT---GGATTAAC-AATTTGT---------------
--TTAAATTAGGGTATAATTGA-----GACATTATATTA-GGTTCAGGTGTTCAATATAATAATTCCACATTTGTCTATA
CTGTGAAATGATC-CCACAATAAGTCTAGTTA--ACATC--------------------AACAATTATT---AAATTCCC
TCAC-CTCTAATAAGACATGCACCCCATAATCATCTCTACCAC
>Rousettus_aegyptiacus
AGAAGAGAATAAAGTCAG--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------GAAGGAAAGCAATAAATTTTCTTATATATGATGACTT---GGATTAAC-AATTTTT---------------
--TTAAATTGAGGTATA----ACAGACAACATTATACTA-GGCTCAGAAGTATAACATAATGATTCAATATTTGTATATA
TTG--AAATGATCATAACAGTAAGTCTATTTA--ACATC-----------GGAGT----AACAGTTACT---AAGTTCCC
T--------------------ATCCCATGATTACCTCCACCCC
>Canis_familiaris
ATAAGA-----AAGTCAG--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------GAAGAAAAGCAA------------CAC---ATGACTT---GGATTAAC-AA---TA---------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------AAGTTCCC
TCTG-CTCTAATAAGAGACGCAGTGCATGACCATTTCCACCAT
>Felis_catus
AAAAGAAAAGAAAGTCAG--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------GAAGAAAAGCAA------------TAC---ATGACTT---GCATTAAC-AA---TA---------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------ACACTCCC
TTAG-CTCTAACAAGCGATGCATCCCATGAACAT---CACCAC
>Manis_pentadactyla
AGAGAG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------GAGGACAAGCAAAAAACTGTCTTGTAT---AT-ACTT---GCATTAAC-AATTATT---------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------AAGTTTCC
TCAG-CTCTAACAAGAGGTGCATCCTGTGA-CATCTCCAATAC
>Sus_scrofa
AGAAGAGAAGAAAGTCAG--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------GAAGAAAAGCAATAAACATTCTTACAT---ATGACTT---GGGTTAAA-AATCATT---------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------TAGTTCTC
TCAG-CTCTAACAAGAGAAGCATTCCATGGCCATCTCCATCAC
>Bos_taurus
AGAAGAAAAT----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------GAAGAAAAGCAGTAAACGCTCTTATAT---ATGACTT---GGGTTAAA-AACT-TC---------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------AAATGCTC
TCAG-CTCTAACAAGATAAACATTTCACGACCATCTCCATCAC
>Condylura_cristata
AAAAGAG----AAGTCAA--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------GAAGAAAGGCAAAAAATGTTCTTATAT---ATGAGTT---GAATTAAC-AATTATT---------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------ATGTTCCC
TCAG-CTCTAGCAAGAGATGCAGCCCATGACC---TTCACTAC
>Sorex_araneus
NNNNNNNNNNNNNNNNNN--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------NNNNNNAAGCAATAAACTTTCTCACAC---ATGATTT---GCTTTTAA----CATA---------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------ATGTTCCT
TCAAACTCTGATAAGACA--CAATCCGTGACGATCTCCATCAC
>Homo_sapiens
AGAAGAGAAGAAAGTCAGTGTATTGGTCCATTCTATTTATTGTATTAGTTCATTCTCATGCTACTAATAAAGACATACCA
GTGACTGGGTAATTTATGAAGGAAAGAGGTTTAATGGACTCACAGTGCCATATAACTGGGGAGGCCTCAGGAAACTTACA
ATCATGGCAGAAGGGGAAGCAAACACATCCTTCTTCACATGGTGGCAGACGTGCAGAGTGAAGTTGGGGAAAAGCCTCTT
ATAAAACCATCAGATCCTGTGAGAACTCACTATCACAACAACAGCATGGAGGTAACTGCCTCCATGATTCAATTACCTTC
CACCGGTCTGTCCCACAACACCTAGGGATTACGGGAACTACAATTCAACATGAGATTTGGATGGGGACACAGCCAACCTA
TATCAGTCAGGAAGAAAGC--------TTTTTATAT---ATGATTT---GGATGCAC-AATTATT---------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------AAGTTCCC
TAAG-TTGTAATGAGAGATGAATCCCATGATTATCTCTACCAG



Horse61_LINE

>L1MAB_EC
--------------------------------------------------------------------------------
----------TTTTTTTTTTTCAGTTTTATTGAGATATAATTGACATATAACATTGTATTATGTTTAAGGTGTACAACAT
AATGATTTGA-TATATGTATATATTGTGAAATGATTACCACAATGAAGTTAATTAACACATCCATCACCTCACATAGTTA
CAAATTTTTTTTTTGTTTKTGTGATGAGAACTTTTAAGATCTACTCTCTTAGCAACTTTCAAATATACAATACAGTATTA
TTAACTATAGTCACCATGCTGTACATTACATCCCCAGAACTTATTCATCTTATAACTGAAAGTTTGTACCCTTTGACCAA
CCTCTCCCTATTTCC-CCCACCCCCCAGCCTCTGGCAACCACCAATCTATTCTC--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------
>Equus_caballus
TCACA--CCTTC------------ACAAAT---TCAGGGACACTGCCTGACAGGTAGAGTTGCTATAAAC---GCAGTGT
TTTGGGT-----TGTTGGGTTTTTTTTTTTTTAGATATAATTGACATATAACATTATGTTA-GTTTCAGGGGTACAACGT
AGTGATTCAA-TATTGGTATATATTGAGAAATGATCACCACAGTAAGTCTCGTTA--ACATCCATCACCACACATAGTCA
CCAATTGTTTTTCT-----TGTGATAAGAACTTTTAAGATCCACTCTCTTAGCACCTTTCAGATATGCAAGACAGTA-TA
TTAACTACAGTCTGTACGCTGTACCTTACAACCCCAGGCCTTATTCGTTCTATAACTGGAAGTTTGCACCTTTGGCCC--
CCTTCACCCATTTCA-CCCACCCCGACTCCCCC------------------------GTGGTG------TATTATT---A
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------AAGCAAGG-CAG---TGATAGAATAGCACATTAGGATTTTG----GGCAAAATAGTTT
>Ceratotherium_simum
TAAAAGACCTTC------------GCAAAT---TCAGGGACACTGGCTGACAGGTAGACTTGCTATAAAA---GTAGTGT
TTAGGAT-------------TTTTTTAA----AGATATAACTGATGTATAACATTATATTA-GTTTCAGGTGTACAACAT
AATGTCTTGA-TATTTGTGTATATTGTGAAACAATCACCACAATAAGTCTAGTTA--ATATCCATCACTGTAGATATCTA
CAATATTTTTTTCT-----TGGGATGAAAACTTTTAAGATCCATTTTCTTAGCAACTTTCAGATACACAATACGGTATTA
TTAACTGCAGTCACCATGCTGTAAATTACATCCCCAGGACTTATTCATTTTATAACTGGAAGTTTGTACCTTTGGTCT--
CCTTCACCCATTTCG-TGCCCCCCA--------------------------------GCAATG------TATTTTT---A
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------AAGCAAAG-CAG---TAATAGAATAGCACATTATGATTTTT----GGCAAAATAGTTT
>Myotis_myotis
TAACAGACCTTC------------ATAAGT---TCAGGGCCACTGCCTAATAGGTAGAGTTGCTCTAAAA---GGAGTTT
ATTTTTT------------------TAAATTGAGATATAATTGACATAAAGTGTTCTCTTA-GTTTCAGATGTATAACAT
AATGATTTGA-TATTTATATATATTGTGAAATGATCACCACAGTAAGTCTAGTTA--ACATCCATCACCACACATAGTTA
CATGGTTTTTGCT------TGTGATGAGAACCTTGAAGATCTACTCTCTTAGCAGCTTTC-GATATGCAGTACAAGGTTG
TTAACTATGGTCACCATGCTGCACATTACATCC-CAGGACTTATTTATCTTATAACTGGAAGTTCGTACTTTTGATCC--
CCTTCAATCATTTCA-CTCACCCCACCCCA---------------------------GCAGTG------TATTATT---A
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------AAGCAAAATCAG---TAATAGAATAACACGCTATGATTTTT----GCCAAAATAATGT
>Rousettus_aegyptiacus
TAAATGACCTTT------------GCAAAT---TCAGAGACACTGCCTGACAGGTAGAGTTGCTATAAAA---GCAGTTT
GTTTATT----------------TTTTAATTGAGACATAATTGACATAAAATGTTATCTTA-ATTTCAAGTGTGTAACAT
ACTGATTCAATTTTTTTTATAGATTATGAAACGATCACCACAAT--GTCTAGTTA--ACATCCATCACCACAC--AGTTA
CAAAATTTTTTTTCT----TGTAATATCAACTTTTAAGGGCTACTCTCTTAGCAACTTTCAAATATGCAATACAACAATA
TTAACTAAAGTCTCCATGCTGTACATTACATCCTCAGCACTTATTTATCTTAT-ATTGGGAGTTTGTACCTTTTGACC--
CCTTCACCTATTTTGCCCCACCCCA--------------------------------GCAGTA------TATTATT---A
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------AAACAAGA-CAG---TAATAGAATAACACACCATGATTTTT----GGCAAAATAGTTT
>Canis_familiaris
AAACAAATTTT-------------GCCGAT---TCAGGGACACTGCCAGGCAGGTAGAGTTGCTATAAAA----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------GCAATG------TATTACT---A
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------AAACAAGG-------GAGTAAGATGAAATGCTTTGATTTTA----GGCAAAATACATT
>Felis_catus
AGAAAAACCTTT------------GCCAAT---TCAGGGACACTGCCTGACAGGTAGAGTTGCTATAAAA----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------GCAGTG------CATTATT---A
TTATTAAAAATTTTTTAATGTGTATTTATATTTGAGAGAGAGAGAAAGAGAGAGCGAGAGAGAGCACAAGCAGGGGAGGG
GCAGACAGAGAGGGAGACACAGAATCTGAAGCGGGCTCCGGGCTCTGAGCTATCAGCACAGAGCCCTATGCAGGGCTCAA
CCCCACGAACCATGAGATTATGACCTGAGCTGAAATCAAGAGTTGGACTCTCAACCAACTGAGCCACCCAGGCGTCCCTA
AAAGCAGTGTATTATTAAAACAAGG-------CTATAAGATGACAGGCTATGATTTTT----GGCAAAGTAGATT
>Manis_javanica
AAAAAGACTT--------------GCAGAT---TTAGGGACTCTGCCAGACAG----AATCGCTA-AAAA----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------GCAGTG------TAGTATA---A
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------AAACAAGG-CAG---TAATAG-ATAATACACTGTGATTTGG----GGGAAAGTAGTTT
>Sus_scrofa
TAAAATGCCTTTT-----------GCAAAT---TCAG-GACCCTACCTGACAGGTAGACTGACTGTAAAA----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------GCAGAG------TCTTATT---A
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------CAATGAGG-CAGCTATAAAAAAATAACATACTCTGCTTTTT----GGCAAAAGAGTTT
>Tursiops_truncatus
TAAAAGGCCTTT------------GCAAAT---TCAGGGACACTGCCCAACAGGTGGAGTGGTTATAAAA----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------GGAGGG------TATTATT---A
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------CAATAAGG-TGG---TAATAGAATAATACACTGTAATTTTT----GGCAAAATAGTTT
>Condylura_cristata
TAGCAGCCTCT-------------GGGAAT---TCAGGCCCATTGCCTGGCAGGTAGAGTTGTTACAAAA----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------ACAGTA-----TTAATATT---C
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------AAGCACAG-CAG---CCATAGACTAACA--TTATGATTTT-----GGCAAAATAGTTT
>Uropsilus_gracilis
CAACTGACCTTT------------GGAAAT---TCGGAGATATTGTCTGGCAGTTAGAATTGTTATAAAA----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------GCAGTGAAATATTATTATT---A
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------AAGCACAG-TGG---TCAGAGACTATCA--CTATGATTTTT----GGTGAAATAGTTT
>Galeopterus_variegatus
CAAAAGACCTTTCAATGTTTAGTGACAAAGACATTAGTGACACTGCCTGACAGGTGGGGTTGCTATGAAA----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------ACAGTG------TATTATT---A
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------AAATAAAG-CAG---TAATAGAATAACATACCGCGATTTTTTTTAAGCAAAATAGTTT



Horse63_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
---TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGA----------
---------TGTTTTGATATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACA
TAGTTACCAT---TTTTTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAAATTTCAAGTATACAATACAGTA
TTATTAACTATAGTCACCATGCTGTACATTAGATCTCCAGAACTTATT--------------------------------
-----------------------------------------------
>Equus_caballus
ATCTGAA-TTCAGTTAAGTGGCAT---AGAAGACTGATATGAATAAATTAAATGTTTCA---ATTATGGATTA-TTATTA
----------ATTTTTATTGAGGTATAACTGACATACAACA-TTATATGAGTTTCAAGTGTACAACATAA----------
---------TGATTTGATATTTGTGTATATTGCAAAATGATCACCAC---AAGTCTAGTTAAC--ATCCATTACCACACA
TAGTTACAGATTTTTTTTTTCTCGTGATGAGAACTTTTAAGATCTACTCTCTTATCAGCTTTCAAATATGCGATACAGCA
TTATTAACTATAGTTGAGATGCTGTAC------------------------ATTTTGGATTATTGTTTT---AA-GTGAT
TGAAATATTAGTGCTTTCCTTTTCAGAGAGTCAAACTCTT-AAGTAT
>Ceratotherium_simum
ATCCGAA-TTTAGTTAAGTGGCTTAGGAGAAGACTAATATAAACAAGTTAAATGTTTCA---ATTATGGATTA-TTATTT
------------TTTTATTAAGGTATAATTGACATACAAGA-TTATATTAGTTTCAACTGTGAAACATAAATTTTGTTTT
TATTGCATTTTTGTTTTTATTTGTATTTATTGCAAAACGATCGCCACAGTAAGTCTAGTTAAC--ATCCATCACCACACA
TAGTTACAGAATTTTTTTTTCTTCTGATGAGAACTTTTAAGATCTACTCTCTTATCAACTTTCAAATATGCAATACAGTA
TTATTAACCATAGTCGCCATGCTGCAC------------------------ATTTTGGATTATTTTCTT---AA-GTGAT
TGAAATATTAGTGCTTTCTACTTCAGAAAATTGAACTC---AAATAT
>Myotis_myotis
ACTTGAA-TTTAATTAAGTGGCATAGGAAAAGACTAATATGGAT-----AAATATTTTA---ATTAGGGATTA-TTTGAA
---------------T-------TATAGTTGACATTC---A-GTCTGTTACTTTCAGGTGCACAACATAA----------
---------TGA-TTGATATCTGTATATATTGGGAAATGATC-CCACAATCAGATTAGTCAAC--AGCCATCATCATACA
TAGTGTTAGA---TTTTTTTCTTGTGATGAAAACTTTTAAGATTTATAATTTTATGAACTTTCAAATACGCAGTACAGTG
TTACTAACTATAGTTGTGATGCTGTAC------------------------ATGATAGAT---TTTTAA---AAAGTGAT
TGAAA---GAGTGCTTTCCATTTCAGAGAATTGAACACTT---GTAT
>Rousettus_aegyptiacus
ATCTGAA-TTTTGTTAGGTGACAT---AGAAAACTAATATGAAT-----AAATGTTTCA---TTTATGGATTA-TTTTTC
---------------TA------TTGAGATGACATAA---A-TTTTATTTGTTTCA-GTGTACAACATAA----------
---------TGATTTGATATTTGTGTATGTTGAGAAATTATTATTATGATAAATCTAGTTAAT--ATACATCACCATGCC
TAGTTATAGA---TATTTTTCTTGCGATGAGAAATTTTAAGATCTAC----TCATCAATTTTCAAATATGCAACATAATG
TTATTAATAATAGTCCTTATGCTGTAC------------------------ATTATGGAT---TTTTAG---AAAGTGAT
TGAAATACTAATGCTTTCCATTTCAGAGAATTAAACTCTT---GTGT
>Canis_familiaris
ACCTGAGTTTTAAGTAAGTAGTATAGGAGAAAACCAATATAAAGAAATGAAATGTTTCA---ATTATAGATTA-TTTTTA
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------AAAGTGAT
TGAAATATTAGCACTTTCCATTACAGAGA-TTGAACCCTT-AAATGA
>Felis_catus
ACCTGAGTTTTAAGTAAGTGGTATAGGAGAAGACCAACATAAATACATGAAATATTTCA---ATTATGGATTATTTTTTT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------AAAGTGAT
TGAAATATTAGCACTTTCCGTTATAGAGACTTGAACTCTT-AAGTAA
>Manis_javanica
GTCTGAGTTTTACTCAGGTGGCAGAAGAGAAGATTAATGTGAATAAATGAAATGTTTCA---AATATGGG-TA-TTTTTT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------GA-GTGAC
TGACATATTAGTGCTCTCCATTTCAGAC--TTGAACTC---AAATAA
>Sus_scrofa
ATCTGAATTTTATTTAAACGTAAT---AGAAGACTAATATGAATACATGAAATGTTTCA---ACTATGGATT----TTTT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------AA-TTGAT
TGACATATTAGTGCTTTCCATTTCAGAGAACCGAACTCCTCAAATAT
>Bos_taurus
AGTT--GTTTTAGCAAAGTAGCATAGGAGAAGATTAATATGAATCAATGAAGTGTTTCA---CTGATGGATT----TTTT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------AA-GTGAT
TGAAATATTAGTGTTTTCCATTTCAGAGAATTGAACTCTT-AAATAT
>Condylura_cristata
AACTGAGTTTAAGTTAAGTGACATAGAAAATTTCTAATATGAATATTTGAAGAGTTTCA---ATTCTGGGTT----TTTT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------AA-GTGAT
TGAAATGTTAGTTCAATCTATTTCAGAGAACTGAAATATT-AAATTT
>Solenodon_paradoxus
ACCTAAGTTTTAATTAAATAGCAGAGAAGA---CGAATTTCAGTAAATGAAATGTATCA---ATTATGAATTA-CTTTTT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------AA-ATGAT
TGAAATATTAGTGCTTTCTATTTCAGAGAACTGAATTCTT-AAATAT
>Homo_sapiens
ATTTGAG-TTTAGTTAAGTGGCATGGGGGAAAATTAATATGAACAAATGATATATCTTA---ATTATAGATT--TTTTTA
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------AA-G-GAT
TGAAGCATAAGAGTTTT-TATTTCAA----------TCTT---ATTT



Horse71_LINE

>L1MA9_3END
----------------------------------------------------------------------------TAAT
TAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTT
TATTTGTCAATTATACCTCAATAAAGCTGGAAAAA---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---
>Equus_caballus
GACAGCAGGTGCGGCAAAC-AGAGTTTGAACTCT---GGAATTAGGA-CTAGGTT---AGAATCATATCAGAC-------
-----TTCTTGTGGT-ATCATTTCGCAATATATAAAAATATTGAATCATTATGTTACACACCTGAAACCGATATAATGTT
T-TGTGTCAATTATATCTCAAT----TTTTAAAAAA---AG-AATCATATCAGC---CCCACTGCTTAAA-ACAATGTAT
GAC----CTC----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------GGTTAGGTGACTTGGCTTCT-C
CCA
>Ceratotherium_simum
GACAGTAGGTGCAGTAAAC-AGAGTTTGAATTCT---GGAATTAGGA-CTAGATT---AGAATCATATCAGAC-------
-----TTATTGTGGTGATCATTTCACAATATATACAAATATTGAATCATTATATTGTACACCTGAAAC-----TAATATT
T-TATGTCAATTATATCTCAAT----TTAAAAAGAA---AG-AATCATATCAGC---ACCACTGCTTAAA-AAGATGTAT
AAC----CTT----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------GGTTAGGTGATTTGCCTTCT-C
CCA
>Myotis_myotis
GACAGAAGGTATAATAAAC-AGAGTTTGCACGCT---GGAGTTAGGAGCTGGGTT--------------AGAC-------
-----TCATTGTGGTGATTATTTCACAATATATACAAATATTGAATCACTATGTTGTATATCTAAAATTAACATGAGGTT
A-TATGTCAATTATATTTCAGC----TAAAAAAAAG---AG-AATCAAATCAGC---CCTACTGCTTAAA-AAGTTGTAT
GAC----CTC----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------AGCTAGATGATTCGGCTTTT-C
CCA
>Rousettus_aegyptiacus
GAGAGCAGGTGCAGTAAAC-AGAGTTTGAACTCT---GACACTAGGAGCTAGGTT---AGAATCATATCAGAC-------
-----TCA-TGTGGTGATCATTTCACAATATATACAAATATTGAATCAC--TGTTGTACACCTGTAACTAATATAATGTT
A-CATGTCAATTATATTTCAAT----T---AAAAAA---AG-AATTGTATCAGC---TCTGCTACTTAAA-AAGTTGTAT
GCC----CTC----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------AGTTAGACGACTTGACTTCTAT
CTA
>Canis_familiaris
GACAGCAGGGGCAGAAAAC-GGAGTTTGAACTCTGGAGGAGTTCGGAGCTAGCTT-------------------------
--------------------------------------------------------------------------------
---------------------------------------AG-AATCATATCAGC---TCTGGTGTTTGAA-AAGATGTAT
GAC----TTC----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------ACTTAAGTGACTTGGCTTCT-C
GCA
>Felis_catus
GATATCAGGTACAGAAAAC-AGAGTCTGAACTCT---GGA----GGAGCTAACTT-------------------------
--------------------------------------------------------------------------------
---------------------------------------AG-AATTGCATCAGC---TCTGGCGCTTAAA-AAGATGCAT
GAC-----TTGGAGTGCCTGGGTGGCTCAGTTAGTTAAGCGTCTGACTTTGGCTCAGGTCATGATTTCATGGTTTGTGAG
TTCAAGCCCCACAGTGGGCTCTCTGCTGTCAGCACAGAGCTGGCTTTGGATCCTCTGTCTCCCTCTCTCTGCCCCTCCCC
TTCTCAAGAATAAATAAACATTGGGGCACCTGGGTGGCTCAGTCGGTTAAGCGTCCCAACTTCGGCTCAGGTCACGATCT
TACTCTTACAGTTTGTGAGTTCGAGCCCCACATCGCGTCAGGCTCTGTGCTGACGGCTCAGAGCCTGGAGCCTGCTTCAG
ATTCTGTGTCTCGTTCTCTCTCTGCCCCTCCCCCACTTGTGTTCTGCCTCTCTCCATCTCTCAAAAGTAAGTAAATGTAA
AAAAAATTTTTTTAAATAATAAATAAACATTTATAAAAAAAAAAAAAGATGTGACTTCAGGTGGGTGACTTGGCTTCT-C
CCA
>Manis_pentadactyla
GACAGCAGGCACAGAAAAC-AGAGCCTGAACTCTGGAGGAGTTAGGAGCAAGCTT-------------------------
--------------------------------------------------------------------------------
---------------------------------------AG-GATCATATCAAC---CCCACTACTAAAA-AAGATGTAT
GAC----CTT----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------GGGTAGGTGACTTGGCTTCT-A
ACA
>Sus_scrofa
GATGACAGGTGCAGAAAAC-AGAGTTTGAACACT---GAAGTTCAGAGCTAGCTT-------------------------
--------------------------------------------------------------------------------
---------------------------------------A--AATCCTATCAGC---CCTGCTGCTTAAA-AAGAT----
-------CTT----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------GGCTGGGTGACTTAATTTCG-C
TCA
>Bos_taurus
GGTAACAGGTGCAGGAAACAAGAGATTAAACTCT---GGAGTTAGAAGCTAGCTC-------------------------
--------------------------------------------------------------------------------
---------------------------------------A--AACCTTATCATC---CCCACTGCTTAAACAAGATGTAT
GAT----ATT----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------GGCCAGGCGACTTAGCTTCT-C
CTA
>Condylura_cristata
GACAGCAGGTGCAGCTAAC-AGAATTG-----------------GGAGCTATAAA-------------------------
--------------------------------------------------------------------------------
---------------------------------------AG-AATCATCTCAGA---TCCTTTGCTTACA-AAGATGTAA
GACCTTGCTT----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------GGTTAGATGACTCAGCTTCT-G
TCA
>Solenodon_paradoxus
GATAGCAGGTGCAGTAAAG-AGAGTTTGAACTCT---AGAGTTAAGAACTAGGTT-------------------------
--------------------------------------------------------------------------------
---------------------------------------AG-AATCCTATCAGT----CCTGTGCTTAGA-AAGATGTCT
GAT----GTC----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------TATTAGGTGACTTAACTTCT-C
CCA
>Homo_sapiens
GACAGCAGTTGCGGCAAAC-AGAGCTTGGACTCT---GGAGTGAAGAGCTAGGTC-------------------------
--------------------------------------------------------------------------------
---------------------------------------AGAAATTAAATTAGC---CCCACTGCCTAAA--AAATACAT
GAC----TTT----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------TGTTAGTTGACTTGGTTTCT-T
CCA



Horse74_LINE

>L1MAB_EC
--------------------------------------------------------------------------------
---TTTCACAATATATACATATATCAAATCATTATGTTGTACACCTTAAACATAATACAATGTTATATGTCAATTATATC
TCAATAAAACTGAAAAAAAAAAA---------------------------------------------------------
---------------
>Equus_caballus
AAAATAAATTAG-----GAG---TCACTATTCTCTCCCACCCTAAACATTCA-TCCTAGTATT---AAAATGTAGGAT-T
----------------GCAAACATCGAATCTTTATGTTGTACACCCTGGAACTGACATAATGATGCACTTCAATTATACC
TCAATTTTAA----------------AAAAAGTAGAATT---GTACACCAGGCAGCAGCCTTTTAAGACACAGAGTCTAA
TATCCATCACTGTAT
>Ceratotherium_simum
AAATTAAATTAG-----GGG---TCACTATTCTCTCCCACCCTAAGCATTCA-TCCAAGTATT---AAAATGTAGAAT-T
----------------GCAAATATTGAATCACTATGTTGTACACC-TGGAACTGATGTAATGATGTATGTCAATCATAAC
TCAATAAA------------------AAAATGTAGAATT---GTACGCCAGGCAACAG-CTTTTAAGACACAGAGCCTAA
TATCCATCACTGTTT
>Myotis_myotis
AAATTAAGTGGGAGGGAGGGGTGTCACTATTCTCGCCCATCCAAAGCATTCA-CCCAAGTATT---AAAAAGTAGAATAT
----------------GCAAATATTGAATCATTATGTGGTACACC-TGGAAATGATATAATGTTGTATGTCCATTATACT
TCAAGGAAA-----------------AAAATGTAGAATT---GTACAGCAGGCAGCAG-CTTTTAAGACACAGAGCCTGA
TATCCATCACTGTTT
>Rousettus_aegyptiacus
AAATAAAATTTG-----AGGAGTTCACTATTCTCTC-CACCACAAGCATTCC-TCCAAGTATT---AAAATGTAGAAT-T
----------------GCAAATATCAAATCATTGTGTTGTATACC-TAGAACTGATATAATGCTGTATATCAATTAGACC
TCAATTTAGA----------------AAAATGTAGACTT---GTATACCAGGCAGCTG-CTTTTAAAACACAGAGTCTAA
TATCCATCATTGCAT
>Canis_familiaris
CGATTAG----------AGG---TTACTATTCTCTCTCACCCTAAGCATTTATTCCAAGTATG-----------------
--------------------------------------------------------------------------------
--------------------------AAGGTGTCGAATT---TTATACCTGGCATCAG-CCTTTAGGACCC--AGTCTAC
ACTATATTACTGTAT
>Ailuropoda_melanoleuca
AGATTAAATTAG-----GGG---TTACTATTCTCTCCCACCCTAAGCATTCA-TCCAAGTATT-----------------
--------------------------------------------------------------------------------
--------------------------AAGGTGTCAAATT---TTACACCTGGCAGGAG--ATTTAAGACCC--AGTCTA-
CATATATCACTGTAT
>Manis_pentadactyla
AAATTAAATTAG-----GGG---TCACTGTTCTCTCCCTCCCTAAGCATTCA-TCC------------------------
--------------------------------------------------------------------------------
--------------------------AAATTG-AGAATT---TTACACCTGGCAGCAG-CTTTTAAGACAC---ATCGAA
CATCCATCACTGCAT
>Vicugna_pacos
AAATTAAAATA------GGGGGATCATTATTCTCTCTCATCCTAAGCATTCA-TCCAAGTATT-----------------
--------------------------------------------------------------------------------
--------------------------AAAATGTAGAATT---TTACACCTGGCAGCAG-CTTTTAAGACAC--AGTTTAA
TATCCATCATTGTTC
>Bos_taurus
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCACCCTCAGCATTCG-TCCAAATATT-----------------
--------------------------------------------------------------------------------
--------------------------AAAATACAGAATT---TTACCCTTGGCAGCAG-CTTCTAAGACAT--AGTATAA
TAT------CTGTAT
>Condylura_cristata
CAGT-AAGTTAT-----GGG---TCACTATTCTCTTCCAGCCTAAGCATTGA-TCCAAGTATT-----------------
--------------------------------------------------------------------------------
--------------------------AAAGTATAGGATT---TTATACCAAGCAGCAA-TTTTTGAGGCATAAAGTATAA
TATCCATCACTGTAT
>Erinaceus_europaeus
AAATTAAATTTA-----AGG---CCACATTTCTTTCTCAATCTAAGCACTCA-TCCATGTATT-----------------
--------------------------------------------------------------------------------
--------------------------AAAGTGTAGAACT---TTATACCAGGCAACGT-CTTTTAAGATT---AATCTAA
AATCAATCATTGTAA
>Homo_sapiens
AAATTAAGTTAG-----GGGG--TCACTATTCTTTCTCACCCTAAGTATTCA-TTCAAGTATT-----------------
--------------------------------------------------------------------------------
--------------------------AAAGTGTAGAACT---TTACATCAGGCAGCAG-CTTTTAAAACATAGAGTCTAA
TACCCATCATTTTGC



Horse75_LINE

>L1MAB_EC
----------------------------------------------------------------------------ATGG
ATGTGTTAATTAACTTCATTGTGGTAATCATT-TCACAATATATACATATATCAAATCATTATGTTGTACACCTTAAACA
TAATACAATGTTATATGTCAATTATATCTCAATAAAACTGAAAAAAAAAAA-----------------------------
--------------------------------------------------------------------------------
----
>Equus_caballus
TGGTGCACCAGCAAGGCTAGGAAGCTT--GGGCCGGTGAAAACTCCTCGGCA-----AGAGCAGAGGACGGAC-------
----GGGCGCCAGACTTACCGTGGTGGGCATT-TTGC-----ACACAAATGTTGAGTCATTATGTTGAACACCTGAAAC-
TAATA---TGTTATATGTTAATTATATTTCAACTAAA--AAAAATCTCAACTACAACAACA-------------------
--AAAGACAAAGA--------G-TTTCTTTT-----CTGTCTTCCAC------AGGCAGTCAGAGAGCATGTTGTC-AGT
CCGG
>Ceratotherium_simum
CGGTGCAGGGACGAGGCTCTGAAGCTCCAGGGCAGGTGAAAACT-CCCAGCA-----AGAGTAGAGGACAGAT-------
----GGTAGCTAGACTTATCGTGGTGATCATT-TCGC-----ACACAAGTATCAAATCATTATGTTGTACACCCGGAAC-
TAATATCATGTTATATGTCAATTATACTTCAACCAAA---GAAAACTCAACTACAAGAACA--------AAAATAAAAA-
--AGAGTCACAGGTGGAA---T-TTTCTTTT-----CCGTCTTCCAT------GGGCAG----AGAGTGTTTTGTC-AGC
CCGG
>Myotis_myotis
CGGAGCACAAACA-GGCTCTGCAGTTCCAGGATGTGTGAAAA-----------------------GGAC-GGT-------
----GGCAGCGAGACTT---GTGGCGAGCGTT-TCTCAGTCTATGCAAATATCAAATCATCACGCTGTACG-CTGAAAC-
CAGTACAGTGTTACCTGTCAACTCT--CTCAATAAGAACAAAGAAACCAATAA--GAAACCCCTCAAAGACAAGAAAGC-
--AGAGTTAAGGATGGGA---T----CTATT-----CTGTCTTCCAC------AAGCA---------------GTC-GGT
CCTG
>Rousettus_aegyptiacus
CTGTGCACAAATA-GGCTCTGTACTTCCGGGACAGGCGGAAA---CCCAACC-----GGAGTCAAGGACGGAT-------
----GATCACTAGAGTT---GTTGTGATCACTGTCTCAGTGTAGACAAATGTTGGATCATCGTGGTGTACACCTGAAAC-
TCATATAGTGTTATATGTCGATTATATCTTAATGAAAACAAAGAAACGAACAACAAAAAAACTAAAGACAAAGGAAAAA-
--AGAGTCGAGGATGGAT---T-TTCCTTTT-----CTGTCTTCTTCCA---CGGACGGTC--AGAGTGCGTGGTC-AGT
CTGC
>Canis_familiaris
CGGCGCACAAATAGAGCTCTGTGCTTCCAGGACAGGTGAGATCTCCTTGGCA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--AGAGGCAAGGGTGGAA---T-TTTCTTTC-----CTGTCTTCCAT------GCGCAGGC--CCGCTGTCCTGTC-AGT
CTGG
>Felis_catus
CGGTGCACAAATAAGGCTCTGTCCTTCCAGGACAGGTGAGATCTCCTTGGCA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--AGAGGCGAGGATGGAA---T-TTTCTTTC-----CTGTCTTCCGT------GGGCAGCT--GGAGTATGTTGTC-AGT
CTGG
>Manis_pentadactyla
CAGTGCACAAACAGGGTGCTGCAGTTCCAAGACAGGTGAAAAGTCCTTGGCA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--AGAGCTGGGGATAGAA---C-TGTCTTTTCTTTTCTGTCTTCCACTGTCTTCCGCAGCTGAAGAGCGTGTTGTC-AGT
CCAG
>Sus_scrofa
CGGTGCACAAACGAG-----GCACATCCAGGACAGGTGAAAACTGCTCAGCT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--AGGGTCGGGGATGGAC---T-TTTCTTTG-----CTGTC------------------------------------AGC
CCAG
>Tursiops_truncatus
TGGTGCACAAACAAG-----GTAGTTCCAGGACAGGTGAAAACTGCTCCACA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--GGAGTGGGGGGTGGAA---T-TTTCCTTC-----CTGTCTTCCA-------GGGC------AGAGTGTACTGTC-ATT
CT-G
>Condylura_cristata
AGGTCCACAGA----ATTCTGTGGCCCTGGGGCAGGTGA-AATTCTCTGGC-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--AGAAGTGAGGATAAAA---T-TTTC-----------------CAT-------GGGGCTAAGTGTGTGTGCTGTC-AGC
AC-A
>Sorex_araneus
TTGTGTATAAAAATGATTCCGCAGTGCCAGGG--------AACTCCTGGGTA----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--AGAG-CAAGTATGGGA---AGCTTCTTTT-----CTGCCATTTCC---------TGACCAAAGTGTGTGGGGCCTTAT
ATGG
>Homo_sapiens
CGATGCACTAAGAAGGCTCTGTGGTTCT-GGGTGGGTGAAAAGTCCTCGGCAGC--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--ACAGTCAAAAATGAGA---T-TTTCTTTT-----CTGTCTTCCATTG----AGGAAGTCAAAGAGTGTGTTGAC-AGT
CTGG



Horse78_LINE

>L1MA9_3END
---------------------------------------------------------------------------TTTTT
CCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATATACGTATA
C----ATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACA-TAGTTACCATTTTTTTG-----
-----------------------------------------------------------------
>Equus_caballus
CTTTATCTCTATATTGGTAA--AT-AAATTTTTGTACTTTTC----TTTTTATTCTTT---TGGGTATTTCT--------
---TTTTTATTAAGATATAATTGACATAT-AACATTATATTAGTTTCAAGTGTACAAGATAATGATTCAATATTTGTATG
T----GTTGTGAAATGATCACCACAATAAGTCTAGTTAAC--ATTTGTCATCAGACAATTGTA---------------TT
GGTATTTC---AATC-CCAAAATTA---AACACTAGAAGAATCGAATACAGATGGGCTTTTCTGA
>Tapirus_indicus
CTTTATCTCTATATTGGTAA--GT-AAATTTTTGCACTTTTC----CTTTTATTCCTT---TGGGTATTTCT--------
--TTTTTTATTAAGACAGAATTAACATAT-AACATTATATTAGTTTCAGGTGTACAACATAATGATTTGATATTTGTATA
T----GTTGTGAAATGATCACCACAATAGGTCTAGTTAAC--ATCTGTCATCATACAACTGTT---------------TT
GGTATTTC---AGTC-CCAAAATTC---AACACTAGAAGAATCAAATACAGCTGGACTTTTCTGA
>Myotis_myotis
CTT-ATCTCTATGCTGGTAA--AC-AAATTTTTGTAGTTTTC----TTTTTATTCTTT---CAGGTATTTTT--------
--------ATCAAGATGTAATTAACACAT-AACATTGTATTAGTTTCAGGTGTACAACAT-ATGATTTTATATTTGTATA
TACTCATTGTGAAATGGCCACCACAATAACTCTAATTAAC--ATCTGTGACCATAAAATAGTA---------------TT
GGTATTTC---AATC-TCAAAATTC---AATACTAGAAGAATCAAAGATAGCTGGTATTTTCTGA
>Rousettus_aegyptiacus
CTT------TATATAGGTAA--AG-ACATTTTTGTAATTTTT------AAGATTCTTT---TGGGTATTTTT--------
-------TATCATGATATAATTAACATAT-AACATTATATTAGCTTCAGATGTACAACATAATGATCTGACATCTGCATA
T----ATTGAAAACTGACCACTATAGTAAATATAGTTAAC--GTCTGTAACCATATAGTAGTA---------------TT
GGCATTTC---AATT-CCAAAATTT---AACACTGGAAAAATCAAAGGCAGCTGGAATTTGCTGA
>Canis_familiaris
CTCTTTCTCCGCATTGGTAA--AT-AAATTTTTGCACTGTTC----TTTTTATTCTCT---TTGGTA-TTCC--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------AATC-CCCAAATCC---AACATCAGAAGAAT-AAACACAACTGGAATTTTCTGA
>Felis_catus
CTTTTTCTCTACATTGGTAA--AT-AAATGTTTGCCCTTTTC----TTTTTATTCTCT---TTGGTA-TTCT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------AATC-CCCAAATTC---AACACTAGAAGAATCAAACACAACTGGGCTTTTCTGA
>Manis_pentadactyla
TTCTTTCTCTATATTGGTAA--AT-AAATTTTTGTAATTTTC---TTTTTTATTCTTT---GTGGCA-TTTT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------AATG-ACACAATTC---AACACCAGAAGAATAAAATACAGCTGGAATTTTCTGA
>Sus_scrofa
CTCTTTTTCTGCATTGTTAA--ATAAAATTTTTTCACTTTTC----TTTTTATTCTTT---CTAGCA-TTTT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------A-TC-CCAATATTC---AACACTAGAAGAATCAAGTATAGCTAGAATTTTCTAA
>Tursiops_truncatus
CTCTTTTTTTGTATTGGTAA--AT-AACTTTTTGTACTTTTC----TTTTTATTCTTT---TTAACA-TTTT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------A-TC-CCAAAATTC---AACACTAAAAGAATCATGCACTGCTAGAATTTTCTGA
>Condylura_cristata
CTCTATTTATATGTCTGTGT-TGT-AATATTTTGCGCGTTTG-GCATTTTTTTTTTTT---TTGTCA-TTTT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------GGTGTTCAA--TCTGAAAACACTAGAATAGTCAAGTGTAGCTGAAATTTTCTGT
>Scalopus_aquaticus
CTCTATTTATATTTCTGCATTGGT-AATGTTTTGCCCTTTTTGGTATTTTTTTTCTTT---TCAGTG-TTTT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------AATC-TCAA--------GACACTAGAACAGTCAAGTGCAGCTGTAATTTTCTGC
>Homo_sapiens
CTCTATCT------TGGTTT-------TTTTTTTTACTTTTC----TTTTTACGCTTT---TTGGCA-TTTC--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------AATC-CCAGCATTC---AACACTAGAAGAATCAAATACAGTTGGAATTTTCTGA



Horse81_LINE

>L1MAB_EC
----------------------------------------------------------------------TAAGATGAAT
AAGTTCTGGGGATGTAATGTACAGCATGGTGACTATAGTTAATAATACTGTATTGTATATTTGAAAGTTGCTAAGAGAGT
AGATCTTAAAAGTTCTCATCACAMAAACAAAAAAAAAATTTGTAACTATGTGAGGTGATGGATGTGTTAATTAACTTCAT
TG-TGGTAATCATTTCACAATATATACATATATC---AAATCATTATGTTGTACACCTTAAACATAATACAATGTTATAT
GTCAATTATATCTCAATAAAACTGAAAAAAAAAAA---------------------------------------------
----------------------------
>Equus_caballus
TTCTTTATACTTTTC--TTGAATATGTTTAGATTAGTTTTACAGTCAGAGAA---ATA-CACTAAAA----------AA-
----------CATATAATATACAACATGGTGACTATAGTTAACAATACTGTATTGTACATTTGAAAGTTGCTAAGGGAGT
AAATCTTA----------TCACAA-----GAAAAAAAATTTTTTACTATGTATGGTGATGGA--TTTTAACTGAACTTAT
TG-TGGTGATCATTTTGTAATATCTACTAATATG---GAATCATTATGTTGTACACCTGAAGCA-AATATAATGCTATAT
GTTAATT-------------------------------ATAGCTCAATA---ACA------AAAAGTCCAATTGAGACAT
ACATCTATATTGAAGGCCTATTATCCAA
>Ceratotherium_simum
TTCTTCATACCTTTC--TTGAATAAGTTTAGATTAGTCTTATGGTCAGAAAA---ATA-TACTAAAA----------AA-
----------TATATAAGGTGCATCGTGGTGACTATAGTTAACCATACTGTATTGTACATTTGAAAGTTGCTAAGAGAGT
AAATCTTACAAGTTCTCATCACAA----GAAAAAAAAATTTGTAACCATGTGTGGTGATGGA--TGTTAACTGGACTTAT
TG-TGGTGATCCTTT------------------------ATCACTATGTTGTACACCTTAAACA-AATATAATGTTATAT
GTCAATT-------------------------------ATAGCTCAATA---ACA------AAAAGTGCAATTGAGACAC
ACATCTATATTGAAGCACTATTATCCAA
>Condylura_cristata
ATCTTCATACTTTTC---TGAATAAGTCTGGATTTGTTTTATGGTCAGGAAA---ATTATGCTATAA----------AGG
AAGTCCTGGGCATATAATGTCCAGTTCTGTGACTATGGTTAACAATAGTGTATTGCATAATTGAAAGCTGCTAAGGGAGT
ATTTCTTATCAGTTCTTCTAAGGAAAAAAAAAAAAAA----------CTGTGTGCTGATAGA--TGGTAACTGGACTTAA
TGATAGTGATCATTTTACTTCATCTATGTAACTCTCAAAAGAATTATGCTTTATACCTGAAACA-AATATAA---TCTAT
GTCAATT-------------------------------ACATCTCAATT----TA------AAAAGTCCAATCATGAC-T
ACATTTATGTTGACATGCCATTTTCTAA
>Solenodon_paradoxus
TGTGTCATA-TCTTC--TTGAATAATTTCAGA-TAGTTTTATGGTCAGAAAT---ATAGTACAAAAA----------AA-
--GTCATGGGCATGTAACATACAGCATGGCGACTGCAGTTAATAACACTGTATTGTATATTTGAAAGTTACT--GAGAAT
GAATCTTAAAAGTTCTCATTACTA----GGAAAAAAA---TGTGAATATGCATGGTAATGGA--TTTCAACTGGACTTAT
TG-TGGTGATCATTCTGCAATACATAGAAACAAC---AAAT---TATGCTGTACATCTGAAACT-AATACAGCATTATAA
GTCAATT-------------------------------ATATTTCAATT---TTTT-----AAAAGTCCAATTAAAACAC
ACATCTATGTTGAAGCACTATTAACCAA
>Canis_familiaris
TTCTTCATGTTTTTC--ATGAAT----------TCGTTTTGTGGTCAGAAGC---ATA-TACTACTT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------AAAAAGAAAAAAGGTCCAATCGGGACAC
ACAATTATGTTGGAGCATCATTATGCAA
>Felis_catus
TTCTTCATATTTTTC--ATGAATAAGTT-----TAGTTTTGTGGTCAGAAGA---ATA-CATGAC-T-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------AAA------AAAAGTCCAGTCAGGACAC
ACATTTATGTTGAAGCACCATTATGCAA
>Manis_pentadactyla
TTCTTCATGCTTTTC--TTGAACAAGTTTCGATTTGCTTTGTGCTCATAAAA---ATA-TACTATAA-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------AAAA-----AAATGTCCAGTTGGGACAC
ACATCTACACTGAAGCACCATTATGCAA
>Sus_scrofa
TTCTTCATCCTTTCC--TTGAATAAGTTTAGATTAATTCTGTGGTCATAAAA---ATA-CACTATTT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------TTTT------TAAATCCAACTGGGACAC
ACATCTATGTTGAAGCACCCTTATACAA
>Bos_taurus
TTCCTCATACTTTTC--TTGAATCAGTT-----TCATTCTGTGGTCAGAAAA---ATA-TACTGTTA-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------AAAA------CAAGTCCAACTGAGACAC
ACATCTATGCTGAAG-ACCCTTCTACAA
>Myotis_myotis
TTCTTTATACTTTTC--TAAAATAAGTTTAGAATAGTTTTTTGGTCAGAAAA---ATA-TACTATTA-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------AAAG-----AAAAGTCCAATTGGTACAT
ACATCTATGTTGCAACACCATCATTCAA
>Rousettus_aegyptiacus
TTCCTTATTTTTTTTTATTGAATAACTTTAGACTAGTTTTGTGGTCAGAAAA---ATA-TACAATTT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------TTTA------AAAATCCCATTGAGAC--
ACATCTATATTGCAGCATCATCATGAAA
>Homo_sapiens
TTCTTCGTACCTTCC--TTGAATAAGTTTAGATTCATTTTGTTAACAGAAAA---ATA-GAATA-TT-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------TTT-------TAAGTCCAATCAAGACAC
ACATCTATATAGAAGCATTACTACACAA



Horse83_LINE

>L1MAB_EC
--------------------------------------------------------------------------------
------------TTTTTTTTTTTCAGTTTTATTGAGATATAATTGACATATAACATTGTATTATGTTTAAGGTGTACAAC
ATAATGATTTG---------ATATATGTATATATTGTGAAATGATTACCACAATGAAGTTAATTAACACATCCATCA-CC
TCACATAGTTACAAATTTTTT----TTTTGTTTKTGTGATGAGAACTTTTAAGATCTACTCTCTTAGCAACTTTCAAATA
TACAATACAGTATTATTAACTATAGTCACCATGCTGTACATTACATCCCCAGAACTTATTCATCTTAT-----AACTGAA
AGTTTGTACCCTTTGACCAAC-----------------------------------------------------------
-----------------
>Canis_familiaris
A-ATTTTTAAAAAAGGAAGGAAGAAGAAAAAGTTCACCAAAAGATG--GAGAAAT-AGCAAGTGACC-ATTTT-------
-------------------------AAAAAATTGACATACAGTTTACATATAATATTATGTTA-GTTTCAGGTATACAAC
GTAATGATTTGTTGTACAGTATATTTGTATATATTGCAAAATGATCACCACAATAAATCTAGTTA-----TCCATTG-CC
ACACATAGATACAAATATTTCTCT-TTTTTTTCTTGTGATGAGAACTTTTAAGGTCTACTCTCTTAGCAACTTCCAAATA
TACAATCCAGTATTATTAACTATATTTATCTTGCTGTA---------CCTAAGACTTTTTCGT-TTATTTTATAACTGGA
AGTTTGGACT--------------TCCCTTCAC-----TTT---TTGATGTCAGGCCA---------------ATTTTTC
TGTCTGGTCTCTGCCTC
>Felis_catus
A-ATTTTTAAAA----AAGGAAGATGAAAAGGTTCACCAAAAGATG--GAGAAAAAAGAAAATGGCCCTTTTT---TTAT
----CTTAA----------------AAAAAATTGAGAAACAATTTACATATAACATTACATTA-CTTTCAGGTATAAAGC
ATAATGATTTG---------GTATTTGTATATATTGCAAAACGATCACCACAAGAAATCTAGTTA--ACATCCATCA-CC
ACACATAGATACCAATTTTTCTTT-TTTTTTTCTTGTGATGAGAACTCTTAAGATATA-----TCAATGACTTCCAAATA
CACAATACAGTATTATT-ATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNN--------------NNNNNNNNN-----NNN---NNNNNNNNNNNNNN---------------NNNNNNN
NNNNNNNNNNNNNNNNN
>Equus_caballus
A-AT--TAAAAAC---TAGAAAGAAGAAAAGGTTCACCAAAGGATG--GAGAAATAAGCAAGTAGCCTTTCTT---TCCC
TTCACTTTT----------------AAAAAATTGAGATATAATTAGCACATAACATTATATTA-ATTTCAGATGTACAAG
ATAATGATTTG---------ATATTTGTATGTGTTGTGAAATGATCACCGCAATAATTCTAGTTA--AC-TTCATCAGGT
ACACATAAGTACAAGTTTTTCTTTGTTTTTTTCTTGTAATGAGAAATTTTAAGATCTGTTCTCTTAGCAACTTTCAAATA
TACAATTCAATATTATT-ATTATAGTTACCAAGCAGTACATTACATGCCTAGGACTTATTTATTTTGTTTTGTAACTGGA
AGTTTGTACC--------------TCCCTTCAC-----TTT---TTGAGGTCAGGCCA---------------ACTTTTC
AGTCTGGTCTTTGCCTC
>Ceratotherium_simum
A-AT--TAAATAA---AAGGAAGAAGAAAAGGTTCACCAAAGGTTG--GAGAAATAAGCAAGTGGCC-TTTTT---TCCC
TTCACTTTT----------------TAAAAATTCAGATATAATTGACACATAACATTATATTA-GTTTCAGGTGTACAAC
ATAATGATTTT---------GTACTTGTATGTATTGTGAAATGATCACCACAATG--TCTGGTTA--ACAT-CATCA-CC
ACACATAGGTACAAATTTTTCT---TTTTTTTCTTGTGATGAGAACTTTTGAGATCTATTTTCTTAGCAACTTTCGAATA
TCCGATACCGTATTCTT-ACTATAGTCACCATGCTGTACATTACATCCCCAGGACTTATTTATTTTATTCTACAACTGAA
AGTTTGTACC--------------TCCCTTCAC-----TTT---TTGAGGTCAGGCCA---------------ATTTTTC
TGTCTGGGCTCTGCCTC
>Vicugna_pacos
A-TTGACTGAAGCTAAAAAAAAGAAGAGAAAGTTCTCCAAAGGATG--GGGAAATAAGCAAGTGGCC-TTTTT-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------CTCCTTCAC-----TTT---TTGATG-CAGGCCA---------------ATTTTTC
AGTCCTGTCGCTGCCTC
>Bos_taurus
A-AG--ACAAAAAAAAAAGGAAGAAAAAAAGTTGCCCCAAAGGGTG--AACAAATAAGCAAGTGGCC-TTATT-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------CTCCTTCAC-----TTT---TTGATG-CAGGGC----------------AGTTTTC
AGTCTGGTCTCTGCCTC
>Desmodus_rotundus
A-TT--TTAAA-----AAGTAAGAAGAAAAGGTTTACCAAAGGGTG--GGGAAATAAACGAGTGGCTTTCCCC-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------CCCCTGAAC-----ATT---TGGATGTCAGACCA---------------ATTTTTC
ATTCTGGTCTCTGCTTC
>Rousettus_aegyptiacus
A-AT------------TATAAAAAAGAAAAGGTTCATCAAAGGATG--GAGAAATAAGCAAGTGGCC-TTTTT-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------CTCCTTCAA-----TTT---TTGATGTCAGACCA---------------ATTTTTC
AGTCTGG------CCTC
>Condylura_cristata
A-AT--TTAAAAA---AAGGAGGAAGAGAAGGTTCACCAAAGGATGATGGCGAGTAAGCAAGTAGCC-TTTTT-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------CCCCTTTAC-----TTT---TTGATGTCCAGTGA---------------ATTGTCC
-CACT-GTCTCTGCTTC
>Erinaceus_europaeus
ATATTTTT----------GAAGGAAGAAAAAGTTAATTAAAGGATG--GAGAAGAAAGTAATT-----TTGTT-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------CC----CACTTTTCTTT---TTG-TGTCAGGCTA---------------ATTTTTC
--TCTGGTCTTTGCCTA
>Homo_sapiens
A-AT--TT------------------AAAAAGTT-----AAAGATA--GAGGAATAAGCAAGTGGCT-TTTTT-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------CCCCTTCAC-----TTT---TTGATTTCAGGCCATTTGATTTCAGGCCAATTGTTC
AGTCTGGTTTCTACCTC



Horse84_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
----------------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAAC-
-------------GTGATGTTTTGATATACGTATACATTGTGAAATGAT--TACCACAATCAAGCTAATTAACATAT---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------
>Canis_familiaris
TCTAGGACTGTGCCTGTTACATTGTAGGTGCTTGAATAATTGAATGAC---TAAGTGTCAAGCA---CATATATGTATGG
ATGTATGTGTATATATGTATAATTGCA-TATATATATGTAACTGACATAT----AACCTATTAGTTTCAGGTGTGCAAC-
-------------CTAATGATTCAATATTTATACATACTGTGAAATGCC--CACCACAATAAGTC---------------
TATGTGTTAAGCA---TGTTGAA-TGCAGTATCTCATTTAATCCTCACAACAAGGGACGCCTGAGCATCTGCCTTCGGCT
CAGGGTGTGATCACTGAGTCCTGGGATCGAGTCCTACATTGGGCTTCCTGCATGGGGTCTGCTTCTCCCTCTGCCTATGT
CTCGGCTTCTTTCTTTCTGTATCTCTCATGAATAAATAAATAAAATCTTAAAAAAAAATCCTTACAACAACTCTAT---G
AGGTAGATACT
>Felis_catus
TCTAGGACTGTGCCTGTCACACAGTCAGTGCTTGAATCATTGAATGAA---AATGTGTCAAGCG---TATATA-------
----------------------------TACACATAAGTGATTGACATAT----AGCATAATAGTGTCGGGTGTACAACA
TAATGATTATCGAATAATGATTCGATATTTATACATACTGTGAAATGAT--CACCACAGTAAGTC---------------
TACATGTCAAGCA---CTTTGCGTTGCTGTATCTCATTT-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------AATCCTCACAACAAGCCCAT---G
AGGTAGATACT
>Manis_pentadactyla
TCCAGCACTGTGCCTGTCACATAATATGTGCTTGAATAGCTAAATAAA---TATGTGTCAAGGT---TAAAAATTCAGGT
TTTT------------------------TTTCGAGATATAACTGACATAA---TATTACATTAGTTTCAGATGTACAAC-
-------------ATAATTACTTGATATTTGTATCTACTGTGAAATGATACCACCATAGTAAGTC---------------
TATGTGTCAAACA---TTTTGTG-TGCAGTATCTCATTT-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------AATCCTCACACCAACCCTAT---G
AGATAAACAGT
>Equus_caballus
TTCAGCACTGTGCCTGCCACATAGTAGATGCTTGAATCATTGAGTGAA---TATGTGTCAAACA---TTTGTATATATAT
TT--------------------------TATTGAGATATAATTGACATAG------------AGTTTCAGGTGTACAAT-
-------------ACAATGGTTCAGTATTTGTATACATTGCAAAATGAT--CACCACAACAAGTC---------------
TATGTATCAAGCA---TTTTGCA-TGCAGTACCTCATTT-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------AATCTTTATAACAACGCTAT---G
AGTCAGATACT
>Ceratotherium_simum
TTCAGCACGGTGCCTGTCACATAGTAGGTGCTTGAATAATGGAAAGAA---TACGTGTCAAACA---TTTATATATATAT
TT--------------------------TATTGAGATAGAATTGATGTAT-ACCATTATATTAATTTCAGATGTACAAT-
-------------ACAA--ATTCAATATTTGTATATATTGCAAAATGAT--TACCGCAATAAGTC---------------
TACGTATCAAGCA---TTTTGCA-TGCAGTATCTCATTT-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------CATCTTCACAACAACCCTAT---G
AGGCAGATACT
>Sus_scrofa
GCCAGCACTGCACCCATTACATAGTAGGTGCTTGAATAACTGAACAAG---TACGTGCTAAGCC----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------TTTTGCA-TGCAGTATCTCCTTT-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------AACCCTCACCACAACCCTAT---G
AGGTACATACT
>Tursiops_truncatus
GCCAGCACTGTGCCCATCAAATGCCAGGTGCTTGAAGACCTGAATGAA---TATGTGCTAAGCA----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------TTTTTCA-TGCAGTGTCTCTTTC-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------CACCTTCACCACAGACCTAT---G
AGGTACATATT
>Myotis_myotis
TCCAGCTTTGTGGCCATCACACAGTAAGTGCTTGAATCACTGAGTGAA---TATGTGCTAAGCA----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------TTTTGCA-TGCAGTATCTCATTT-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------AATCCTTACAGCAACCCTATAAAA
AAGCACATTGT
>Rousettus_aegyptiacus
CCCAGCTCTGTGCCTATCACATAGTAAGTGCTTAAGTAACTGAACAAA---TATGTGTTAAATA----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------TTTTGTA-TGTA--------TTT-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------AATCCTCACAACAACCCTAT---G
AGGCACATGCC
>Condylura_cristata
CCCAGCACAGAGTGGGTTACATAGTAAGTGCTTAAATAACGTAATGGG---CAGATGTCAAAGA----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------TTTTGCA---CAGTGTCTCATTT-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------GATCCTTACAACAGCCCTCT---G
AAATA-ATGCT
>Uropsilus_gracilis
TCCAGCATTGTGCCTGTT-CATAAT-------------ACTGAGTGAA---TAGGTGTCAAGCA----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------TTTTGCA---CAGTGTCTCATTT-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------AACCCTTACAACAACCCTCT---G
AAGTA-ATGCT
>Homo_sapiens
TCCAGCACTGTGCCTGTTGCAAAGTAGGTGCTTGAATAACTGAATGAA---TAAGTGTCAAGCA----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------TTCTGCA-TGTAATATCT----------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------CTACAACCCTGT---G
AGGTAGGCACT



Horse86_LINE

>L1MAB_EC
-------------------------------------------------------------------------------T
ATCAAATCATTATGTTGTA--CACCTTAAACATAATACAATGTTATATGTCAATTAT---ATCTCAAT---AAAACTGAA
AAAAAAAAA-------------------------------------------------------------------
>Equus_caballus
AGCC---AAAATGTGTTGAAAA-TCTATCTACCTGTTTCTGA--------GTAACAGTAAATC---AAG-GCAAAT----
-------C---ATATTGTA--CACCTGAAAC-TAATATAAACTTATGTGTCAATTGTCAAATCTCAATACAAAGTTTTTC
TTAA--------ATAACACAAT---TTT-ATTTGTTGTATAAGAAGTGCTGTCATGGAATACTATGGGCTACTTTA
>Ceratotherium_simum
AGCC---AAAATGTGTTAAAAA-TCAATCTACCTGTTTCTGA--------GTAACAGTAAATC---AAA-TCAAAT----
-------C---ATATCGTA--CACCTGAAAC-TAATATGATCTTATATGTCAATTAT---ATCTAAAT---AAATTTTTT
T-----------AAAA-ATAAA---ACA-ATTTGTCAGATAAAAGGTGCTGTCATGGAATACTATGCGCTACTTTA
>Myotis_myotis
NNNNNNNNNNNNNNNNNNNNNNNCCTATCTACCTCTTTTTGA-TGATGCCATAACAGCAACTC---AGA-TGGATT----
-------CATCATATTGTACACATCTGAAAC-TAAAATAGTATTATATGTCAACTGT---ATCTCAAT---AACCTT---
------------AAA--ACAAT---TTTTATGTCTCGTAT--GAGACGCTATCATGGAATACTATGGGCTACTCTG
>Rousettus_aegyptiacus
TGCT-TTAAAATGTGTTGAAAT-TCTATCTACCTGATTTTGAATGAT---GTAACAGTAAGTC---AAA-TTGAAT----
-------CGTCATGTTGCATTCACCTGAAAC-TAAAATAATATTATATATCAGCTAT---ATCTCAAT---AAATTTTTT
TAA---------AAAA-ATAAT---TTT-ATTTCTTCAAT--GTGATGCTATTACAGAATATTATGGGCTACTCTA
>Canis_familiaris
AACCTCAAAAATATTTCAAAA-----ATCTGTGTGTTTTTGCGTGATATTGTAACGGTAAATC---AAAACCTAAT----
--------------------------------------------------------------------------------
-------------------------TTT-ATCTCTTGGATAAGAGATGTTATTATGAAACACTATGAATTACTCTG
>Felis_catus
AACC-TCAAAATATGTCAGAA-----ATCTGTGTGGGTCTGAGTGAT---GTTACAGTGAATC---AAAACTTAAT----
--------------------------------------------------------------------------------
-------------------------TTTTATCTATTGGGTAAGAGATGTTATTTTGGAACACTTTGGGCTACTCTG
>Manis_pentadactyla
AGTCTCAAAAATGTATTGAAA-----ATCTACCTGCTTTTGAGTGAAGTTGTAACAGTAAATC---AAACCTTAAT----
--------------------------------------------------------------------------------
-------------------------TTT-ATTTCTTGTTTAAGAGATGCTATCCTGGAATA---TGGGCTATTCTA
>Sus_scrofa
AGTCCCCCAAACGTATGGAAA----------------CTTGAGTGAT---GTAATGGTACATC---AGATTTTAAT----
--------------------------------------------------------------------------------
-------------------------TTG-ACTTACTGGATGAGAGATGCTACCATGGAATGTGATGGAATACTCTC
>Tursiops_truncatus
AGCCTCAAAAATGTGTTGAAA----------------CTTGAGTGATGTTGTAACAGTACATC---AAACTTTAAT----
--------------------------------------------------------------------------------
-------------------------TTT-ATTTCTTGGCTAAGAAATGCTACCATGGCATATGATGGGCTACTCTA
>Condylura_cristata
AATTTCCAAGAGGGACTGAAAAATCTACCTTCCTGTTTTTGAGTGATTAAGTAACAGTTAATC---AAAATTTAAT----
--------------------------------------------------------------------------------
-------------------------ATT-ATCTATTGGTTAGGAGATGCAGTGGTGTAATTATGAGGATTACTCTG
>Uropsilus_gracilis
AGTCTTCAAGGAAGGTCAAACA-TCTATTTACCTGTTTTTGAGTGATATCCTAACAGTTAATC---AAAACTTAAT----
--------------------------------------------------------------------------------
-------------------------AGT-ATCTGTTGGTTAACAGATGCTATCATGGAATA-TATGGACTACACTC
>Oryctolagus_cuniculus
AGCC-ACAAAATATATTAAAA--TATATCTCCATGTTTATGAGTGATATCATAACA-CACATC---AAAACCCAAT----
--------------------------------------------------------------------------------
-------------------------TGT-ACTCACTGGATAAGAGATGC---------------------------



Horse90_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--TTCTGGGTATATATCCAAAGGAAATGAAA-TCAGTATCTCGAAGAGATATCTGCACTCCCATGTTCATTGCAGCATTA
TTCACAATAGCCAAGATATGGAANCAACCTAAGTGTCCATCGACGGATGAATGGATAAAGAAAATGTGGTATATAT----
--------------------------------------------------------------------------------
--------------------------ACACAATGGAATATTATTCAGCCTTAAAAAAGAAGGAAATCCTGCCATTTGTGA
CAACATGGATGAACCTGGAGGACATTATGCTAAGTGAAATAAGCCAGGCACAGAAAGACAAATACTGCATGATCTCACTT
ATATGTGGAATCTAAAAAAGTCAAA-------------------CTCATAGAAGCAGAGAGTAGAATGGTGGTTGCCAGG
GGCTGGGGGGTGGGGGAAATGGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAG
ATCTAATGTACAGCATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGT
GTTCTCACCACACACAAAAAAATGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCAC
AATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAG
CTGGAAAAA-----------------------------------------------------------------------
-----------------------------
>Equus_caballus
AAGGTGCCTTAGGGCCTCTCCTGCCTCC--TTTTCCTAAAGATGCGTTTTATCCACTGATG---AAAAATGGACTCAAT-
----------AT--ATCCAAAGGAAATAAAA-ATAGGATATCAAAGGGATACATGCACTCCCGTGTTTATTGCAGCATTA
TTCACAATATTCAAGATCTGGAAACAACCTAAGTGTTTTCCAACAGATGAATGGACA---AAGATGTGGTATATAT----
--------------------------------------ATGTATATACGTATACGTAT-------GTGTATATGT-----
--------------------------GCACAATGGAATATTATTCAGCCATGAGAAAGAAGGAAATCCTGCCATTTGTAA
TACCATGAATGGACCTTGAGGGCATCATGCTAAGTGAGATAAGTCAAACAGAGAAAGACAAATACTGTATAATATCCCTT
ATATGTGGAATCTTAAAAAAAAAAAAAAAAAGA--------GAACTAGAAAAAGCAGAGAATGGAATGGTGGTTACCAAA
GATTAGGG-GTGGGGAAATGGGAGAGATTTTGTTT-AAGGGTACCTACTTGCAACTA-GCAGA-TAAATAAATCCTGGAG
ATCTAGTCCACAGCACAGGGATTACAGACAACAAAACTGTATT---------AAACTGGCTAAGAGAGTAGATCTTAATT
GTTGCCAC--CACTAGAAGAAATGATAATTATATGACACAATAGAGGTGTTAGCTGATGCTACGATGGCAATCATATTGC
TA--TATAAATGTATCAAAGCAATATGTTGTACTCCTTAAACATACACAA-TATTATGTGTCAATTGTATCTCAATAAA-
------------AAA--TGGACTCAAT---TTAAAG---CAAAGCAAATTTAATAAAAATTCAAATGGGTTG-TA-----
-TTTTTTT-------TTGGTGGAAGTTGA
>Ceratotherium_simum
AAGGTGCTGTAGGACCTCTCCTGCCTCC--TTTTCCCAAAGGCAAATTTTATCTACTGATA---AAAAATAGACTCACT-
----------AC--ATCCAAAGGAAATAAAA-ACAGAATATCAAAGAGATATCTGCACTCCCACGGTTATTGCAACATTA
TTCACAATACCCAAGTTATGCAAACAACTTAAGTGTTTGACAACAGATGAATGGATA---AAGATGTGGTATATAT----
--------------------------------------ATGTATACATGTGTATGTAT---GTGTGTATATATGTGTGTG
CGTGTAT-ATATATATATACACGCACACACAATGGAATACTATTCAGGCATGAGAAGGTAGGAAATCCTGC-------AA
TACCATGGATGGACCTTGAGGTCATCATACTAAGTGGGATAAGTCAGACAGAGAAAGACAAATACTGTATGATATCACTT
ATACATGGAATCTAAAAAAAAAAAAAAAGGAAAAAAACCCTGAACTTGAAAAAACAGAGAGTGGACTGGTGGTTACCAAA
GGCTGGG--GTGGGGGAATGGGAAAGATTTTATTT-AAGGGTACATACTTGCAACCA-GCAGA-TAAATAAATCCTGGAG
ATCTAGTGCACGGTACAGGGATTACAGACAACAAAACTGTACT---------AAACTTGCTAAGAGAGTAGATCTTAATT
GTTCCCAC--CACTAGAAGAAATGATAATTATCTGACACAATAGAGTTGTTAGCTGATGCTACAATGGCAATCATATTGC
AA--TATAAATGTATCAAATCAATATGTTGTACACCTTAAACTTACACAA-TGTTATATGTCAATTATGTCTCAATAAA-
------------AAAATTGAACTCAAT---TTAAAA---CAAAGCAAATTTAATATAAATTTAAAAGGGTTG-TA-----
-TTTTTTT--------TGGTGGACCTTGA
>Condylura_cristata
AAGG-----------------TAGCTACACATTTTCTAAAGACACATT-TATCCTCTGTTG---AAAAATGGACTCTAT-
----------ATA-ATCCAAAGGAAATAAAACCCAGGATATTGAGGAGATATATGCATTCCCATGTTCACTGTAACATTA
TTCATAACAGCCGAGATATAGAAACAACCTAAGTATCTGTCAATGGATAAATGAATATAGAAGATATGATATATATATAT
ATATACACACACACACACACACGTTATGCACACAATCTGTGTATACATACATACATATAAAATATGTGTATATATATTTA
TAT-----ATATACACATACACACAACTATAATAAAATATTATTCAGCTAGGTAAAA----GAAATCCTTCAACTTGTAA
TAACTTAGATCAACCTTGAGAACATTATCCTGAATGAGATAAGTCAAACAAGGAAAG-CTAGTATTTCATGATATTATTT
CTATGTGGAATCTAAACAAGAAAAACAACAAAA----------ACAACAAACAACATTGAAG-GAATCGT-GTTAGCCAA
GATTGGAGTGCAGAG-AATGGGATAGCTGCTGTTT-GAGAGTATATGCTTACAA-TA-GTTGATTAAAAAAATCCTGTAG
ATTTAACACACCGTACAAGGGTTACAGACAACAAAACTCTATTATAAACATTGAACTTGCTAAGAGACTACAACTTAATT
ACCCCCAT--TTCTAGAAGAAATTATAATTATTTGATGAGCTAGAGTTGTTAGCTAATGGTACCATGGCAATCTTATTGC
AA--TATAACTGGATTAAATTGATATGTCATGCACCTTAGAAGCATACAA-TGTTATATATTAATTATAACTTAATTTC-
------------AAAAGTGGACTCAGC---TTAAAA-------GCAAATTTCATCCATATTCAAT--GGTTA-TCTATAT
ATTT-----------TTGGTGGAACTTGA
>Scalopus_aquaticus
AAGG-----------------TGCCTCC--TTTT-CTAACGGCACATTTTATCCTCTGATG---AAAAATGGACTCAAT-
----------AAA-ATAAAAAAGAAATAAAAACCAGGCTATTGGAGAGATATATGCATTCCCATGTTCATTGCAACAATA
TTCACAATAGCCAAGATACGGAAATAACCTAAGTATCTGTCAATGGATAAATGGCTATAGAAGATATGCTATATAT----
--------ACATACACAGACAATGTATACACACACAC-ATATATACACACAAACATATATCATATGAATATATACACACA
CATATGTAATATATGTATATATACAAATGCAGTAGCATATTATTCAGCCAGGTGAAA----GAAATCCTTCTACTTGTGA
TAACATAGATCAAACTTGAGGACATTATGCTGAAAGAT---AGTCAAACAGGGAAAG-CAAATATTTCATGATATCATTT
ATATGTGGAATCTAAAAATAATAAA------------------------AAAAACATGGAAT-GAATGGT-ATTATCAAA
GGTTGGGGGGCAGGG-AATGGGATAGTTGGTGCTT-AAGAGTATATGCTTGCAAGTA-GTTGATAAAAAAAATCCTGTAG
ATTTAATACATAGTGCAAGGATTACAGACAACAAAACTCTATTATAGACACTAACCTTGCTAAGAGACTACATCTTAATT
GTTCTTAT--TACTAGAAGGAATTATAATTATTTGATGAGATAGAGTTGTTAGCTAAC------ATTGCAATTTTATTGC
AG--TATAACTGGATCAAATTGATGTGTCATGCACCTTAAAAGTACACAA-TGCTATATATTAGTGATATATCAATTTT-
------------AAAAGTGGATTCAAA----------------GCAAATTTCATCAATATTCAAATGGTTTTATTTATTT
ATTTATTTA------TGGGTGGAATTTGG
>Canis_familiaris
AAGGTGCTGTAGGGCCCCTCCTG-CTCT--TTGTGCTCAAGGCACATTATATCCTTGGCTG-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------AC--ATGGACTCAAT---TTAACT---CGAAGAAAATCTAAT-CAAATCCAACCACGTTT-TCG----
-TTTGTTTGTTTTGTGTTGCGAATCTTGA
>Felis_catus
AAGGTGCTGCGGGGCCTCCCCTG-CTCT--TTTTCCTTAAGGCGCATTTTATCCCGTGTTG-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------CA--CCGGACTCCAT---TTAAAG---CAAAGAAAATTTAAT-CAACTCCGAACAGGTT---------
-TTTGTTTGTTTTGTTCTGCGGAACTTGA
>Manis_javanica
AAGGTGCTGTAGGGCCTCTCCTACCTTC--TTTTCTTAAAGGCACATTTTATCCTTTGGTG-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------AAAAATGGACTCAAT---TTAAAGT--AAAGAAA-ATTTAAT-CAAATCCAAACAGGTTT-TT-----
-TTTTTTT-----------TGGAAATTGA
>Sus_scrofa
AGGG--------TCCCTCTTCTACTTCC--TCGT--------CATATTTTAGCTCCTGATG-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------AAAAACAAAATCAAT---TTAAAG---TGAAGAAAATTTAAT-CAAATCCAAACAGGGAC-TTTGGGG
ATTTTTCTTTTGCTTTGGGTGGAACTTGA
>Bos_taurus
AAGG--------TGCCTCTCCTAGTTCC--TTTTCTTAAAAGCATATTTTATCTTTTGATG-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------AAAAACAAAGTCAGT---CTAAAGTAATAAAAAAAAATTAAC-CAAATCCAAGCAGACTT-TTTGTTT
GCTTGTTT-------TTGGTAGAAATTGA
>Myotis_myotis
AAGATGCCCAGGGGCCTCTCCTGACTCC--TTCTCCTAAAGGTATATTTCATCCTCTGATA-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------AAAAATGGACTCAAT---TTAAAA---CAAAGGAAATTTAAT-CAGATCTCAACAGTTTA-TT-----
-TTT----------------GGAACTTAA
>Rousettus_aegyptiacus
AAGTTGCTGCAGGGTTGCTCCTGCCTCT--TTTTCCTAAAGGCATGTTTCATTCTCTGATG-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------AAAAACGAACTCAAT---TAAAAA---CAAAGGAAATTTAAT-CAAATCTAAACAGTTTT-TT-----
-TTT------------------AACTCCA
>Homo_sapiens
AAGGTGCCATAGGGCCTCCTCTGCTTCC--TTTTCCTAATGCTGCATTTCATCTTCTGATG-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------AAAAATGAATTTAAT---TTAAAG---CAAAGCAAATTTAATAAAAATCCAGACAGGTAT-TT-----
-TTTTTTTATTTGTTTTGGTGGAACTTGA



Horse92_LINE

>L1MAB_EC
-----------------------------------------------------------------------------AAA
TCATTATGTTGTACACCTTAAACATAATACAATGTTATATGTCAATTATATCTCAA---------TAAAACTGAAAAAAA
AAAA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------
>Canis_familiaris
ATGGAC-----AGGCTGATTATT---CCACAAAATGCTTTTT-TTTTTATTTCTCAT---AAAAACATATTACC------
-------GTCGTATGCC-CAAAAATAATACAATGTTGTGTGTCAACTATATGTCGA----TTTTTTAAAATTGCAGTAAG
AAGAAGAAAAC---CAAA--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------CCACATTATT---CACAGATAGGCA---CAGGAGACC-------------GA
GTCTACTGCA-GCTC
>Felis_catus
GCAGGA-----GGACTGAATATTCTTCCGCAAACTGCTTATT-TTTTTATTT-TGAT---AAAAACACGTTACT------
-------GTTGTACGCC-TAAAAATAATACGATGCTCTGTGTTGATTGTATCTCAATTTTTTTTTTTTAGTTGCAGTAAG
AAGAAGAAAGC---AGGA--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------CCACATTATT---CGCAGGCAGGCA---TGGGATGACAGGGCTCAATCTAGA
GTCTATTCCA-GCTC
>Manis_pentadactyla
ACAGAA-----TGACTGCGTATTCTTCTGCAAACAGA------TTCTTATTT-TTAC---AAAAA-ACCTTAAT------
-------GTTGTCCACC-TAAA---AATATAATGTTATACATCAATA--ATCTCAA-----TTTTAAAACTTGTAGTAAA
AAGGAGGGGAA---AAAG--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------CCACATTATT---CACAGGTAGGCAGGATGAGAAAACAGAACTCAATCCAGA
GTCTGTTCAA-ACTC
>Equus_caballus
ACAGAA-----TGACTGACTACTCTACTGCAAACAGCCCATTCTTTTTATTT-TTAT---AACAACACATTCAT------
-------GTTGCACACC-TAAAAATAATACAATGTT--------ATTATATCTCAA-----TAAAAAAAACTGGAATAAG
GAGGAAA-------AAAA--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------CCACACTACT---CACAGGTGGGCAACAAAGACT-------CTCAACCTAGA
GCCTACTGAA-ATTT
>Ceratotherium_simum
ACAGAA-----CGACGGATTATTCTCCCGCAAACTGCTTATT-TTTTTATTT-TTAT---CACA---CATTAAT------
-------GTTGTACACC-TAAAAATAAT---ATGTTA----------ATATATCAG------TAAAAAAATTGTAGTAAG
TAAAAAAA------AAAA--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------CCACATTATT---CACAGGTAGGCAGCATAGACT-------CTCAATCTAGA
GTCTGTTGAA-ATTT
>Sus_scrofa
ACGGAA-----TGACTGGCCTTTCTTCTGCAAACCGCTTATT-TGTTTATGC-TTAT-----------------------
--------------------------------------------------------------------------------
--------------GAAA--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------ACACATCATT---CACAGGTCAGCAGCATAAGATGACAGACCTCAACCTACA
GTCTGTTCAG-ATGC
>Tursiops_truncatus
ACGGAA---------TGGTTATTCTTCTGCAAACTGA---------TTATTT-TTAT-----------------------
--------------------------------------------------------------------------------
--------------GAAA--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------ACACATTATT---CACAGGTAGACAGAGTAAGATGACAAAACTCAACCTAGA
GTCTCTTCAAGATTC
>Myotis_myotis
ACAGAA-----TGACTGATTATTCTTCTGCAAATTGCTGACT-TTTTTATTT-TTAT-----------------------
--------------------------------------------------------------------------------
--------------GAAA--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------ACACATTATT---CACAGGTAGACAGCATAGGATGGTAGAACTCACCCTAGA
ATCCATTCAA-ATTC
>Rousettus_aegyptiacus
ACAGAA-----TGACTGATTACTCCTCTGCAAATTGTTTATTCCTTTTATTT-TTAT-----------------------
--------------------------------------------------------------------------------
--------------AAAA--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------A--CATTATT---CACAGGTAGCCAGCATAGGATGCCAGAACTCAAACTAGA
GTCTGTTCAA-ATTC
>Condylura_cristata
ACAGAATATGCTAACTGCTCGTTCTCCTGCAGGTGGC---------TTATTT-CTAT-----------------------
--------------------------------------------------------------------------------
--------------GAAA--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------ACACCCGATT---CACAGGTAGAGAGCATGCGATGACAGAAGTCA----ACA
GTCTCTTCAA-ATTC
>Uropsilus_gracilis
ATAGAA-----CTACTGGTTATTCTTCTGCAAGTTGCTTATTT-----CTTT-CGAT-----------------------
--------------------------------------------------------------------------------
--------------GAAA--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------ACACTTTATT---CACAGGTAGACAGCATGGGATGACAGAACTCA----AGA
GTCTCTTCAA-GCTC
>Homo_sapiens
ACAAAA-----GGATTGATAATTCTTCTGCAAACTGCTTTTTAAACA-ATTT-TTAT-----------------------
--------------------------------------------------------------------------------
--------------GTAAGGCCTGGCACTGTGGCTCATGCCTGTAATCCCAGTGCTTTGGGAGGCCGAGGCAGGTGGATC
ACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTAGTAAAAATACAAAAATTAGCCAGG
CGTGGTGGTGCGCACCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAAGAGAATCACTTAAACCCAGGAGGCAGAGGTTG
CAGTGAGCTGAGATCACACCATTGCGCTCCAGCCTGGGTGACAGAACAAGACTCTATCTCAAAAAAAAAAAAAAAAAAAA
ATATATATATATATATATATATATGTAAACATATTATT---CATAGAAAGGCAGCATAGAAGGACAGAATTCAACCTACG
GTCTGCTCAA-ATTC



Horse95_LINE

>L1MAB_EC_
--------------------------------------------------------------------------------
----ATGGTGACTATAGTTAATAATACTGTATTGTATATTTGAAAGTTGCTAAGAGAGTAGATCTTAAAAGTTCTCATCA
CAMAAACAAAAAAAAAATTTGTAACTATGTGAGGTGATGGATGTGTTAATTAACTTCATTGTGGTAATCATTTCAC----
AATATATACATATATCAAATCATTATGTTGTACACCTTAAACATAATACAATGTTATATGTCAATTATATCTCAATAAAA
CTG------------------------AAAAAA-----------------------------------------------
------------------------
>Equus_caballus
AATGCACTGGAACAGGGCTACTTCCC-----------CTCAGAGGGGTTTGAGAATCTGAT---AAAAGCTTGAACTC-T
---TACAGTGAATGTAGACAACTATATTGTACTATAATCATCAAACCTGCTAAGAGACTAGAACTTAATTATTCCAACCA
ATAAAAAGAAAGCA-------TACCTAGGTACTGTGATAGAGGTGCCAAGTATTGCTACAATTGCAGTCATATTACAAAA
AATATATAAATGTATCAAATTAACTTATTGCACATCTTAAAT-TTACACAATGATGTGTGTCAAATATATTTGATTAAAA
AAA------------TCAT--------GAAAAA---AAAAGCTTGAACTCT---CTCCCCTGAAATGCGCAGACATCCAG
TATTCAAATATAGTTTCAAAGAAG
>Ceratotherium_simum
AATGCTCTGGAACAGGGCTTCTTCCT-----------CTCAAAGATGTTTGAGAATCTGAT---AAAAGCTTGAACTC-T
---TATAATGAATGTAGACAACTATATTGTGCTATAATCATCAAACCTGCTAAGAGACTAGATCTTAATTATTCCAACCA
CTAAAAGGAAAGGA-------TAATTATGCACTGTGATAGAGGTGCTAAATATTGCTACAATTGTAACCATACTACAAAA
AATATACGAATATATCAAATTAATTTATTGTACATCTTAAAT-TTACACAATGTTACGTGTCAAATATATTCAATAAAAA
GAA---------ATACCAT--------GGAAAA---AAAGACTTGAACTCT---CTCCCCTGAAATGCGCAGACATCCAG
TGTTCAAATACAGTTTCAAAGAGG
>Myotis_myotis
AATGCTCTGGAACAGTGCTTCTTCCC-----------CTCAGAAATGCTTGAGAACCTGAG---AAAAGCTTGAACTCAT
---TATAATGAATATAAACCACTATATTGAACTATACTCATCAAACCTGCTAAGAAACTAAAACTTAATTATTCCAGCTG
CTAAAA-GAAAGCA-------TAAGTATATAATGTGATGGAGTTGCTAGATGTCTCTACAATGGCAATCATAC-------
AGTAT-TAAATGTATAAAATTAAC--ATTGTACACCTTAAAT-TTACACAATGTTATATGTCAAATATATCCATTAAAAA
ACAACAAC----ATATCATTGAAAGAAAAAAAA---AAAGGCTTGAACTCT---CTCCCCTGAAATGCACAGACATC---
----------CAGTTTCAAAGGGG
>Rousettus_aegyptiacus
AATGCTCTAGAACAGTGCTTCTTTCC-----------CTCAGATATGCTTGAGAATCTGAT---AAAAGCTTAAACTC-T
---TGTAGTGAATATAAACTAGTGTATTGTATTATAATCAGCAACCCTTCTAAGAGACTAGAACTTAATTATTCCAATCA
CTAAAA-GAAAGCA-------GAATTATGTAATATGATGGAGGTTCTAAATATCATTACAATGGTAATCATACTAC----
AATAT-TAAACATATCAAATTAACATATTGTACACCTTAAAT-TTATACAATGTTTTATGTCAAATATATCTAATAAAAT
ACACACACACAAATATTACTGAAG---GGGAAA---AAAAGCTGGAACTCT---CTCCCCTGAAATGCACAGAAATTCAA
TGTTCAGATACAGCTTCAAAGGGG
>Canis_familiaris
AATACCCTAGAACAGTGTTTCTTCCCC----------CTCAGATATGTTTGAGAATTTGAT-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------AAAAGCTTGAACTCT---CTCCCCTGAAATGCGCCAATGTCTGG
TGTTCAAATACAGTCCCAAAGGGC
>Felis_catus
AATGCTCTGGAATAGCATTTCTTACC-----------CTCAGATATGTTTGAGAATTTGAT-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------AAAAGCTTGAACTGT---CTCCTCTGAAATGCACAGATGTCTAG
TGCTCAAATACAGTCTCAAAGCGG
>Manis_pentadactyla
AATGTTCTAGAACAGTGCTTCTTCCC-----------CTCAGACATGTTTGAG--TCTCAT-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------AAAAGCTTGCACTCT---CTCTGCTGAAATGCACAGTTATCCAG
CGTTCAAATA---TCTCAAAGGCG
>Sus_scrofa
AATGCTCTGGCACAGTGCTGCTTCTC-----------CTCAGAGATTTTTGAGAATCTGAT-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------CAAAGCCTGAACTCT---CTCCTCTGAAATGCACAGACACTCAG
TGTTCAAAGAAAGTCACACAGGGG
>Bos_taurus
AATGCTCTGGAACAGCACTGCTTCCC-----------CTCAGTCATGTTTGAAAATAGGAT-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------CAAGGCTTGAATTCT---CTCCCCTGAAATGCACAGACACCCAG
TGTTCACATAAAGTCACAAAGGGG
>Condylura_cristata
AATGATCTAGAACTGTGTCTGTTCAC-----------CTCATATATGTTTGAGAATCTGCT-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------TACAGCTTGAATTCT---CTGCCCTGAAAGGCACAGACATCATG
TGTTCAAATACAGTT-TGAAGGGG
>Erinaceus_europaeus
AATGTTCTAGAACAGTGGTTCTCACCCTCC-------CTCAGAATGGTCTGAGAATAGGAT-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------AAAAACCTGAA-TCT---TGCTCCTGAAACGCACAAGTATCCAG
TGGTCAAATACAGTTGCAAAAAAA
>Homo_sapiens
AATGGTCCAGAACAGTGCCTCTTACCCTTTCCTGTATCTCAGATATGTGTGAGAATCTGAT-------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------AAAAGCTTGAACTGT---CTCCCCCAAAATAGACACACATCCAT
TGTCCAAATACAGGTTCAAAGGGG



Horse98_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------TTTTTCCAGCTTTATTGAG
GTATAATTGAC---------AAATAAAAATTGTA----TATATTTAAGGTGTACAACGT-GATGTTTTGATATACGTATA
CATTGTGAAATGATTACCACAA----------------------------------------------------------
---------------------------
>Canis_familiaris
TTTAATCCTAAAGTATATACTACCCAGTTTAAAGCAAATCATT-----CATTTTC---TATG------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------CCTCAATTCTTT------TAAA--------AGAG
GTATAATTGAC---------ATGTAACAG-TATA----CTGGTTTCAAGGGTACAAAGT-AATGATTCAATATTTGTATA
TACTACAAAA---------------CATGCCTCAATTCTTT----AACCTACAAAATGAGGACCCTTTGTTTCCTTGATT
GCAGCCTTATC-AACA----AAGGTTA
>Felis_catus
TACAATCCGAAAGCATGCACCATCCGGTCTAAAGCAAGCCATTC----CATTTCC---AATG------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------CCTCAATTCTTT------T-----------TGAG
GTATAACTGAC---------ATAGAACAG-TATA----CTAGTTTCAGGTGTACAAAGT-AGTGATT----ATTTCCTTA
TCCTGCAAAA---------------TATGCCTCAATTCTTT----AACCTACAAAATGGGTACCTTCTCCTTCCTTGANN
NNNNNNNNNNNNNNNNNNNNNNNNNNN
>Manis_javanica
T---ATACTAAATTATACACTACCTAGTCTAAGGCAAGTCATCA----CATTTTC---TATA------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------CCTTATTTTTT----------A--------AATT
ATGTAATTGAC---------AC---ACAT-TTTA----TTAGTTTCAGGTGTACAACATAAATGATTCAACATTTTTATA
AATCATGAAA---------------AATGCTTCGATTGTTT---------ACCAAATGAGT---TTGACCTTCTTTGAAT
GTAGCCCTATC-AACAGTGAAAGGGTA
>Equus_caballus
TATAATCCTCCAGTATACACTATCCACTCTAAAGCAAGTCATTC----TATTTTC---TATG------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------CCTCAATTCTTG------------------AAAA
TTGAGGTTGACAATGA----ATGTAATTGACACA----TTAGTTTCAGGTATACAATGT-AATGATTTGATACTTGTGTA
TATTGTGAAA---------------TATGCCTCAATTCTCT----AATCTACAAAATGGGTAC--CCTGTTTCCTTGATT
GCAGCCCTACC-AATAGT----GGATA
>Ceratotherium_simum
TATAATCCTAAAGTATATACTATCCAGTCTAAAGCAAGTCATTC----CATTTTC---TATG------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------CCTCAATTCTTT------TTTT--------AAAA
TTGAGGTTGACAATTATTTAATGTAACTGACATAACATTAAGTTTCAGGTATACAATGT-AATGATTCGACATTTGTGTA
TATTGTGAAA---------------TATGCCTCAATTCTTT----AATATACCAAACGGATACCTTCTGTTTCCTTGAAT
GCAGCCCTATC-AACAGT----AGATA
>Eptesicus_fuscus
TATGATTCTAAAGTACACACTGCTCAGTCTAAAGCAAGTCATTCATCACACTTTC---TACACCTCAATTCTTTTTTTTT
AAATATAGTTTTTATTGATTTCAGAGAGGAAGAGAAGGAGAGAGAGAGAAACAGCAATGATGAGAGAGAATCACTAACTG
GTTGCCTCCTGCACGCCCCCTACTGGGGATGGAGCCAGCAACCCGGGCACGTGCCCTGACTGGGAACCAAACTGTAATAT
CCTGGTTCATAGGTTGATGCTCACCCACTGAGCCAGCTAGGCTCCCCCTCAATTCTTT------TTATAAGTTG--AGGT
GTAAAATTGAC---------AATTAACCT-TATA----TTAGTTTC-GGTGTACAAC----ATGATTCAGTGTTTGTACA
TATTGTGAAA---------------TATG-CTC-ACTCTTT----AATCTGCAAAATGGATACCTTCTGTTTCCTTGATT
GCAGCCCTATC-AACAGTGGACAGATA
>Pteropus_vampyrus
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NACA------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------CCTCAGTTCTTT------TTTATTTTTAATTGAG
GTATAATTGAC---------ACAT------TATA----TTAGTTTTAGTTGTACACCAT-AATGATTCAGTATTTGTATA
TATTGTGAAA---------------TATTCATCAATTCTTT----AATCTACAAAATGGGTACTTTCTGTTTC-TTAATT
GCAGCCCTATC--ACAGTGGAAGAATA
>Sus_scrofa
TCTAATCCTAAAGTATACACTACCCAGTCGAAAGCAAGTCATTC----CATTTTC-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------TATGCCTCAATCCCTT----AATCTCGAAAAT-GGTACCTTCAATTTCCTTAATT
GCAGGCCTCACACACAGTGGAAGGGTA
>Tursiops_truncatus
TCTAACCTGAAAGTATACACTACCCAGTATAAAGCAAGTCATCC----CATTTTC-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------TATGCCTCAATTCCTT----AATCTAGAAAATGGGTACCTTCAGTTTCCTTGATT
GCAGCCCTAGCAAATAGTGCAAAGATA
>Condylura_cristata
TTTAATCCTGAAGTTGATTCTAACCAGTCTGGTGGGTATTGTTC----CATTTCC-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------TATGCCTCAGTTTCTT----AATTTACAAAGTGGGTAC--TCTGTTTCCTTGATT
GCAACCCTATC-AACAGTGGAAGGATG
>Uropsilus_gracilis
TTGAATCCTCACACAGACACTAACCAGCCTAATACACATCATTC----CATTTTC-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------TATGCCTCAGTTCCTT----AATTTACAAAATGAGTGC--TCTATTTCCTTGATT
GCAGTCCTAGC-AACAGTGAAAGGATG
>Homo_sapiens
TCTAATCCTAAAGGATACACTACCCAGTTTAGAGCAAGTCATTC----CATTTTA-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------TATGTCTTAATTCCTT----AATCTACAAAATGGGTACATTTTGTTTCCCTGATT
GCA------------AATACAAGGATA



Horse99_LINE

>L1MAB_EC
-------------------------------------------------------------------------------T
TTTTTTTTTTCAGTTTTATTGAGATATAATTGACATATAACATTGTATTATGTTTAAGGTGTACAACATAATGATTTGAT
ATATGTATATATTGTGAAATGATTACCACAATGAAGTTAATTAACACATCCATCACCTCACATAGTTACAAATTTTTTTT
TTGTTTKTGTGATGAGAACTTTTAAGATCTACTCTCTTAGCAACTTTCAAATATACAATACAGTATTATTAACTATAGTC
ACCATGCTGTACATTACAT-------------------------------------------------------------
--------------------------------------------------------------------------------
-----CCCCAGAACTTATTCATCTTATAACTGAAAGTTTGTACCCTTTGACCAACCTCTCCCTATTTCCCCCACC-----
--CCCCAGCCTCTGGCAACCACCAATCTATTCTCTGTTTCTATGAGTTTGGTTTTT--TTTTTTTAGATTCCACATATAA
GTGAGATCATGCAGTATTTGTCTTTCTCTGTCTGAC--------------------------------------------
---------------------------
>Equus_caballus
TCA---TTTTCTTGGCCTCTATTTCTTTGT-TTTGCTAAATTAATTATTGT---ATATA---TTCATGGTACTTTT----
---------------TTATTGAAGTATAATTGACTATTAACATTATCTTA-GTTTCATGTATACAATATAATGATTCACT
ATTTGTATATGTTGTGAAATGATTAACACAATAAGTCTAGTTA--ACATCTG-CCCCATACATAGGTATAAAATTATTT-
---TTCTGGTGATAAAGACTTTTAAGATTTAATTTCTTAGCAATTTTCAAATACACAATATACTATTATTAACTATAGTC
ACTGTGCTGTACTTTACAT-------------------------------------------------------------
--------------------------------------------------------------------------------
-----CCCCATGCCTTACTTATTTTATCATTGGAAATCTGGCTCC---------CCTTTACCCATGTCGCCTGTCCTCCC
AACCTCCACTTCTGACAACCACCAATCTGTTCTCCATATCTATGAGCTTGGTTTGTTATTTTTTTACATCCCACATATAA
GTGAGATCATAAGGTATTTGTCT----------------TTCATGGCACTTTT---ATCTAGGAAGCAAAGGAAGAATAA
CATTATAAATTTAAATAGTGCAAACTG
>Ceratotherium_simum
TCA---TTTTCTTGGCCTGTATTTCTTTGTGTTTGCTAAATTAATTATT-T---ATATA---TTCACAGTACTTTT----
---------------TTACTCAAGTATAAGTGAC-TATAACATTATATTA-GTTTCAGGCGTACAATATGATGACTCAAT
ATTTGTATATATTGTGAAATGATAAATACAATAAGTCTAGTTA--ACATCTG-CCTCATACGTAGGTACAAAATTATTT-
---TTATAGTGATAAGGACTTTTAAGATTTACTTTCCTAGCAACTTTCAAATATGCAATACAGTATTATTAACTATAGTT
ACCATGCTGCACTTTACAT-------------------------------------------------------------
--------------------------------------------------------------------------------
-----CCACACGACTTACTTATTTTATCACTGGAAGTGTGTACCT--TGGGCCACCTTCACCCATTTTGCCCATTCCCCC
AACCTCTGCCTCTGGAAACCACCAATCTGTTCTCTGTATCTATGAACTTGGTTTGTT-TTTTTTTAGATTCCACATATAA
ATGAGATCATAAGGTATTTGTCT----------------TTCATGGTACTTCT---NNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNN
>Myotis_myotis
TTA---TTTTTGTGGCTTCCAGAACTTTTCTTTTGTTAAATTAATTATTGT---ACATG---TTTATAGCACTTTT----
----------------TATTGAGGTATAATTGCCACATAACATTGTATTA-TTTTCAGGTATACAATATAATGATTCAAT
AATTGTGCATATTACAAAAAGATCAACACAATACATCTGGTTA--ACATCTATCTCCATACATAGGTA--ATATTTTTT-
---TTCTTGTAATCAAGACTTTTAAGATTTACTCTCTTCCCAAGTTTCAAATATTCAA-----------------TAGCC
ACCATACTATACTTTACATCCTGTGATCTATTTATTTTATTTACTGATTTTTAGAGAGGGAAAGAGAAAGAGGTTAGGCA
TTCTTGTATGTGCCCTGGCCAGGGATAGCTGAACCCTCAACCTTGGTGTATCAAGACAATGAATGCTCCCACCACCTGGG
GGGACCCCCAGGACTTATTTATTTTATAACTGGATAT-TGTACCTTTGGGCCCCCTTTAACCCA--------------CC
CACCACCACCTCTCACAACCAACAATGAACT---TGGCTTTTTGTTGTTGTTTTGTG-TTGTTGTTAATTTAATATGTAA
GTAAGATCATATGGCATTTGTCT----------------TTCATGGCACTTTT---ACCTATGAAGCAATAGTAGAATGA
CATTATAATATTAAATAGCATAAGCTA
>Rousettus_aegyptiacus
TCA---TTTCCTTGGCCTCTGTTTCTTTGCTTTTATTAAATTAATTAT------CCATA---TTCATGACATTTTT----
----------------TATTGAGCTTTAATTGCCATATAACATTA------GTTTCAGGTGTGCAACATAATGAATAAAT
ATCTGTACATAT---GAGAGGATAACCACAATAAACCTAGTTA--ACATCTGTCCTCATACAT-------ACATTTTTT-
---TTCTTGTAATGAGAACTTTTAAGATATGCTCTC--GGCAGCTTTCAAATATGCAATACAATATTATTAACTGTAGTC
ACTATGCTGTACTTTACTT-------------------------------------------------------------
--------------------------------------------------------------------------------
-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNN----------------NNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNN
>Canis_familiaris
TCA---TTTTCTAGGGCTCTATTTCTT-GTTTTTGCAAATTTAATTCTTAT---GCACA---TTCATGGCACTTCT----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------ATATGAGAAGCAAAGGAAGGATGA
TATTATAAATTTAAACAGTATAGGTTC
>Felis_catus
TCA---CTTTCTTGGCCTCTACTTCTTTGTTTTTGTGAAGTTAATTATTGT---ATGCA---TGCGTGGTACTTCT----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------GTCTATGAAGCACAGGAAGAATGA
CATTATAAATTTAAGCAGTATAAACTC
>Manis_pentadactyla
TCA---TTTTCTTGGCCTCTATTTTTTTGTTTTTGTTCAATTCATTTTTTTTTTACATA---TTCATGGCACTTCT----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------ATCTGTGGAGCAAAGGTAGAATGA
CATCATAAATTTAAATAGTATAAACTA
>Sus_scrofa
TCT---TTTTCTTAGCTTCTACTTATTTATTTTTG-----TTAATTATCAT---ACATA---TTCATGGCCCTTCT----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------ATCTATGAGGTAAAGGAAGAAGGA
C---ATAAAGTTAAATAATATAAAATA
>Bos_taurus
TCC---TTTTCTTAGACTATATTGATTAGTTTTTG-----TTAATTATTAC---ACATA---CCCACAGCACTTCT----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------ATCTATGAAGCAAAGGAAGAGTGA
TATTATAAATTTAAATAGTATATAATA
>Condylura_cristata
TCA---TTTTTCTGGCTTCTAGTCCTCT-TTTTTGTTAGTTTAATCACT-------GTA---TATATGGTACTTTT----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------TCTGT-AAGCAATGGAA-AATG-
----ACAAATTTAAATACAATATATGA
>Uropsilus_gracilis
TTATAAGTTTCCTGGTCCTTAGTTCTCTGTTTTTGTCAGTTCAATTAGTAT---ATGTA---TCTGTGGTACTTTT----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------TCTGTGA-GCAAAA-AAGAATGA
---CATAAATTTAAACAGTATGAGCTA
>Homo_sapiens
TCA----TTTCTTGGCCTTTATT--TTTGTATTTGCTGAAATAATTATTGC---ACATA---CTCATGGCAGTTTT----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------AT----GAAACAAAG-------AA
TAACATAAATTCCAATAGTA-AAACTA



Horse101_LINE

>L1MAB_EC
-------------------------------------------------------------------------------T
TTTTTTTTTTCAGT------------TTTATTGAGATATAATTGACATATAACATTGTATTATGTTTAAGGTGTACAACA
TAATGATTTGAT--------------------------------------------------------------------
--
>Equus_caballus
GGGTAAGAATTAAATTCAAGTTTAACAGTAACTTTTGCTCTGGGCTTTAT---TTTCTTTTT-------------ATGTT
TATTTGTTTTTTATTTTATT---TTATTTATTGAGATATAATTGACATACAACATTATATTAT-TGTCAGGCATACAACA
TA-------------TTTCCTTGT---AAAGCCTGGTGTTATACACTTACTTTCTTAAGCAGCAAGACTAATG----GAA
GT
>Ceratotherium_simum
GGGTAAGAATTAAATTCAGGTTTAATAGGACCTTCTGCTCTGGGCTGTAT---TTTCCTTTT---------TTGTTTGTT
TATTTGTTTTTTAT------------TTTATTGAGGTAAAATTGACATACGACATTATATTAT-TCTCAGGTGTACAACA
TG-------------CTTCCTTTT---AAAGCCTGCTGTCATGCACTTATTTTCTTAAGCAGCAAGATTAATT----GAA
GT
>Myotis_myotis
GGGTATGAATTAAATTCAACTTTAGTGGTACCTTCTGCTCTAGGCTTTAT---TTTCCTTTT-----TCTTTTGTTTGTG
TGTTTGTTTTTTGTTTAATTCTCTTTTTTATTGAGTTATAATTGATGCAGAACATTATATTAC-TTTCAGATGAACACCA
TA-------------TTTCCTTTT---AAAGCCTGTTGTTATATGGTTGCTTTCTTATGCTTG-----CAATT----GAA
AT
>Rousettus_aegyptiacus
GGGTAAGCATTAAGTTCAAGTTCAACAGTACCTTCTGCTCTGCGCTTTAT---TTTCCTTTT---CATTGTTGTTGTGTT
TGTTTTATTTCATTTTTTTT---TTTTTTACTGAGGTATAAATG-------------TATCAG-TCGCAGTTGTGCA---
---------------TTTCCTTTT---AAAGACTGTTGGTACATGCCTGCTTCCTCAAGCAGCAAGATGAACT----GCA
AT
>Canis_familiaris
GGGTAAGTATTAAATTCAAGTTTAATAATACCTTCTGTTCTGGGCTTTAT---TTTTCTTTT------------------
--------------------------------------------------------------------------------
---------------------------AAAGCC---TGTTAGACTCTTGCTTTCTTAAGCACCAAAATGAACT----GAA
AT
>Felis_catus
GGGTAAGAATTAAAGTCAAGTTTAATAAGAACTTCTGCTCTGGGCTGTAC---TTTCCTTTT------------------
--------------------------------------------------------------------------------
---------------------------AAAGCCTGTTGTGATACACTTGCTTTCTTAAGCACCAAAACGAACT----GAA
AT
>Manis_pentadactyla
GGGTAAGAACTA----CAAGTTTAGTAATATCTTCTGCTCTGGGCTTTGT---TTTCCTTTT------------------
--------------------------------------------------------------------------------
---------------------------AAAGACAGTTGTTATTTGCTTACTTTCTTAAGCAGCAAAATTAATTAACTGAG
AT
>Sus_scrofa
GTATAA-AACTAAATTCAAGTTAAATAATGCCTTCTGCTTTGGTCTTTAT---TTCCCTTTT------------------
--------------------------------------------------------------------------------
---------------------------AAAGTCAATTGTTATGTGTTTGCTTTCTTAAGCAGCAAGATTAATT----GAA
AT
>Bos_taurus
GGGTAATAACTAAATTCAAATTTAATTACATCTTCTGCTCTGGGCTTTAT---TTTCCTTTT------------------
--------------------------------------------------------------------------------
---------------------------AAAGTCCATTGTCATATGCTTGCTTTCTTAAGATGGAAGGTTAATT----TAA
AT
>Condylura_cristata
GACTATGAATTAAAAGCAAGTTTAATAATACTTT---CTCTGATCTTTAT---TTCCCTTTT------------------
--------------------------------------------------------------------------------
---------------------------AAAGCCCATTGTTATACACATGCTTTCTGAAGCAGCATATTTCATT----GAA
GG
>Erinaceus_europaeus
GTATAACAATTAAATTCAAATTAAAT---ACCTTCCTCTCTGGGCTTTAT---TTTACTTTT------------------
--------------------------------------------------------------------------------
---------------------------CAAATCTAGTGATACATACTTGTTTACTTAAAAAGCAAGATAACCT----GAA
AT
>Homo_sapiens
GGTTAAGAATTAAATCGAAGTTTAATAGCATCTTCTGCTCTGGGCTGTAT---TTTCTATTT------------------
--------------------------------------------------------------------------------
---------------------------AAAGTCCATTGTTATACACTTACTGTCTTAAGCAGCAATATTAACT----AAA
TT



Horse104_LINE

>L1MAB_EC
--------------------------------------------------------------------------------
----------GGGGGGTGGGGGAAATAGGGAGAGGTTGGTCAAAGGGTACAAACTTTCAGTTATAAGATGAATAAGTTCT
GGGGATGTAATGTACAGCATGGTGACTATAGTTAATAATACTGTATTGTATATTTGAAAGTTGCTAAGAGAGTAGATCTT
AAAAGTTCTCATCACAMAAACAAAAAAAAAA----TTTGTAACTATGTGAGGTGATGGATGTGTTAATTAACTTCATTG-
TGGTAATCA--TTTCACAATATATACATATATCAAATCATTATGTTGTACACCTTAAACATAATACAATGTTATATGTCA
ATTATATCTCAATAAAA---------------------------------------------------------------
--------------------------------------------------------------------------------
---C-----------------------------TGAAAAAAAAAAA----------------------------------
--------------------------------------------------------------------------------
-------------------
>Canis_familiaris
TTAAACCCTGTGTTAGGACACTTTGTCTGCAAGTGGCAGA--------------AAGCCAACTG---AAAATA-CCTTAC
TCAAAAT-----------------AGTTGAAGGGG---GTCAAAA-----------TAAGTAATCAAAT----AAGTTAT
GGGGATGTAATACACAGCGTGGTGACCATAGTTAATAATACTCTGTTGCATATTTGAAAGATGC--AAAGAGTAGATCTT
CAAAATCTTCATCACAAGAAAAAAAAGTAAAACCTTTTGTAACTGTGTAGAGCGACGGA--TG-TAACTAGACATATGG-
TGGTGACCA--CTTTGCAAAATATATAGATATTGAGTCATTATGTTGTACACCTGAAAC-TAATATAATGTTATATGTCG
GTTATACCTCAATAAAA-AAATGTTTTAAAAAAAGCCTAGACATT--GTAACCATATGATCCAGCAATTCTACTCTTAGG
TATTTACCTTAGAGAATTGAAAACATATGTCCACACAAAAACAGCTAACATCATACTTAGTGGTGAAATATTGAGCACTT
TCCC-----------------------------TAAAAAAAAAAAAAAAAAAAAAAAAAAAGAACAAA---AAAG-ACCT
CACTC-AAAAT---AAGGAGATGATTAG------------CTTATTCATTCACTCATTCATTCAGTCT--GTAAGTTGAT
AGTACTTTTTTGAGAACCT
>Felis_catus
TTAAACCCTATGTTAGAACACTTTGTCTACAAGTGGCATAAAAAAAGTAGCAGGAAGCCACCTG---AAAATAACCTTAA
TCAAAAT----------------------ATAAAGCAAATGAAATGAAATGAA---------ATGAAAT----AAGTCAC
AAGGATGCAATATACAGCATGGTGACCATACTGAATAATACCGTATTATGTATTTGAAAGATGC--AAAGAGTAGATCGT
CAGATGCCTCGTTACAAAAAAATAAAAAATAAAA-CTGGTAACTGTGTATAGTGATGGA--TG-CAACTAGGCTTATAG-
CGGCGATCATTTTTTGCAATGTGTAGAACTATTGAATCATGATCTTGTATACCTGAAAC-TAATAGAATGTAATATGTCA
GTGATACCTCAATAAAAAAAAAAGTCTTAAAAAAGGCTAGACGTAAAGCTACCATCTGATCCAGCAATTCCATGCTTAGG
TATTTACCTTAGAGAATCGAAAACAT-----------------GCTAACATCATTCTTGGCAATGAAATAGGGAGTGCTT
CCCCCCCCCCACCCCCCCCCCCCCCCCCCGCCTTGCCAGAAAGC---------------------------AAAG-ACCT
TACTC-AAAAT---AGGGAGGTGATTAG--------------------CTCCGTCGGTCTATCCGTCT--GAAAGCTGAC
AGTACTTTACGGAGAGGCT
>Manis_pentadactyla
CAGAACCCTGTATTAGAATATTTCGTCTGCAAGTGGCATA--------------AAGCCAC-------------------
--------------------------------------------GGCTACAAACTTCCCGTTATAAAAT----AAGTCAT
GGGTATGTAATGTACCACATGGCGACTATAGTTAATAATACTGTATTGCATATTTGAAAGTTGCTAAAAGAGTAGGTTTT
AAAGATCCTCATCCTACAAGAAAAATAA-------TCTGTAACTATGTATGGTGACAGA--TGTTAACCAGACTTACTA-
TGGTGATCA--TTTCACAATATATACAAATATCCAATCATTATGTTGTACACCTGAATC-TAATGTAATGTTATATGTCA
ATTATACCTCAATTTAAAAAAATTTTTT---TAAGGTTAAACATA--GTTACCATATGATCCAGCAGTTCCACACTTGGG
TATTTACCTCAGAGAATGGAAAATAAATCTCCACACAAAAACTGTTAACATCATATTTAGTGGTGAAATACTGAGCACTT
TCCC-----------------------------TAAAAAAGAAT---------------------------AAAGTATCT
TACTT-AAAAT---CAGGAAGTAATTAG----------------CTCATTCATTCATTCATTCAACT---GTGAGTTGAT
AACACTTTATTGATTATCT
>Equus_caballus
TTGAATGCTGTATCGGAACACTTTGTCTGCAAGTGGCATA--------------AAGCCAACTG---AAAATA------C
TTAAAGT-----------------ATTGGAAGAGG---GTCAAAAGGTACAAACTTCCTGTTACAAAATA---AAGTCCT
GGGGGTGTAATGTACAGCATAGTGACTATAGTTAATAATGCTTT-TTGCGTATTTGAAAGTTGCTAAGAGAGTTGATCTT
AAAAGTCCTCATCATAAGAAAAAAA----------CCTCTAACTATGTATGGTGATGGG--TATTAACTAGACTTGTTAT
TGGTGATTA--TTTTGCAATATATACAAATACTGAATCATTGTGTTACACACCTGAAAC-TAATATAACGTTATATGTCA
GTTGTACCTCAATAAAAAAAATTTTTTT---AGAGGTTAAACATAAAGTTACCATATGATCTGGCGATTCCACTCTTAGG
TATTTACCTTAGAGAATTGAAAACATATGTCCACACAAAAACAGGTAATCTTATACTTAGTGGTGAAATATTGAGTGCTT
TCCC-----------------------------TAAAAAAAAA----------------------------AAAATACTT
TCCTC-AAAAT---AGAGAAGTGATTAG--------CTCATTCATTTATTCATTTATTCATTCAGTCT--GTAAATTGAC
AACACTTTATTAAGTACAT
>Ceratotherium_simum
CTGAACGCTGTATTAGAACACTTTGTCTGCAAGTGGCATA--------------AAGCCAACTG---AAAATA--CCTAC
TCCAAGT------------------TTTGAAGAGG---GTCAAAAGGTACAAACTTCCAGTTACAAAATAAATAAGTCAT
GGGGATGTAATGTACAGCATGGTGACCATAGTTAATAATATTGTATTACTTATTTGCAAGTTGCTAAAAGAGTAGATCTT
AAAAGTCCTCCTCACAAGAAAAATAAAAAAT----TTTGTAACTATGTACGATGACAGA--TGTTAACTAGATTTATTG-
TGGTGATTA--TTTTGCAGTACACACAAATATCAAATCATTATGTTGTACACCTGAAAC---ATACAATGTTATATGTCA
ATTACACCTCAATAAAAAAAATTTTTTT---TTAAGTTAAACATAAAGTTACCATATGATCCAGCAATTCCACTCTTAGG
TTGTTACCTTAGAGAATTGAAAACATTTGTCCACAC-AAAACATGTAACATCAGACTTAGTGGTGATATAGTGAGCGTTT
TCCC-----------------------------TAAAAAAAG-----------------------------GAAATACCT
TTCTC-AAAAT---AGGGAAGTGATTAG----------------CTCATTCATTTATTCATTCAGTCT--ATAAATTGAC
AACACTTTTTTGAGTACCT
>Sus_scrofa
TTGAATGCTGTATGAAGACACT--GTCTACAAGGGGCATA--------------AAGCCGACTG----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------AAAATCCCT
TACTC-AGAAC---AGGGAAGCCATTAG------------TTCATTCCCTTATTCATTCGTTCAGTCTTAGCAAGACGAC
AGGACTTC---GAGACCCC
>Bos_taurus
TTGAACACTGTATTAGGACTCTCTGTCTACAAGTGGCATC--------------AAGTCAAATG----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------AAAATGCCT
TATTC-ATAAT---AGGGAAGTGATTAC--------------------TTCATTCATTCATTCAGTCA--GTAAGTTGAC
AACACTTT---GAGTCTCT
>Myotis_myotis
TTGAATGCTGTATTAGAACACT--GTCTGAAAGTGGCATT--------------AAGCCAACTG----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------AAAATGCTT
GACTC-AAAAT---GGGGAAGTGATTAGCTCGCTCACTCATTCATTCATTCATTCATTCATTCAATCA--GTAAGCTGAC
AACACGTTATCGAGTACCT
>Rousettus_aegyptiacus
TTGAACGTCGTATTAGGGTACTTTGTCTGCAAGTGGCATA--------------AAGCCAACTG----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------AAAATACCT
TACTC-AAACT---AGGGAAGGGATTCG----------------TTCATTCATTCATTCATTCAATCG--GCAA------
----CTTTATTGAATACCT
>Condylura_cristata
TTGTACACTGTACTAGTTATATACATCGACACATGGTATA--------------AAGCCCATCC----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------AAGCTGGCT
TACTC-AGGAT---AGGGAAGTGATCAG--------CTGATTCATTCACTCACTCATTCTTTCTTTCT--GTCAGTTG--
AATCCTTTATTGAAAACCC
>Scalopus_aquaticus
TTGAACATTGTACTAGTATA---TATCGACAAGTGGCATA-------------AAACTCATCAA----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------AGATGGCT
TACTC-AAAAT---AGGAAAGTGACTAACTCCTTCCTTCCTTCCTTCTTTCCTTCCTTCCTTCCTCCC--TCCCTCCCTC
CCTTCCTTATTGAATACCT
>Homo_sapiens
TTAAATGTTGTGTGAGAATACTTTGT----AAGTGGCAGA--------------AACTCAACTG----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------AAAATACTT
CATGCAAAAAT---AGGAAAATGATTAG----------------CTCATGTGTTAATTCATCCAATCA--GTAAGTTGAC
AGCACTCTGCTGAGTACCT



Horse106_LINE

>L1MAB_EC
-------------------------------------------------------------------------TTTTTTT
TTTTCAGTTTTATTGAGATATAATTGACATATAACATTGTATTATGTTTAAGGTGTACAACATAATGATTTGATATATGT
ATATATTGTGAAATGATTACCACAATGAAGTTAATTAACACATCCATCACCTCACATAGTTACAAATTTTTTTTTTGTTT
KTGTGATGAGAACTTTTAAGATCTACTCTCTTAGCAACTTTCAAATATACAATACAGTATTATTAACTATAGTCACCATG
CTGTACATTACATCCCCAGAACTTAT--TCATCTTATAACT-GAAAGTTTGTACCCTTTGACCAACCTCTCCCTATTTCC
CCCACCCCCCA---------GCCTCTGGCAACCACCAATCTAT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>Equus_caballus
ACCTCTTGCTTTGTGCTTTGTGAGGTAGATGCTCTCCTCACAAGACTTCTTC---CTGAAATGGATTCTT---TTTGTTG
TT---------GTTGAGGTATAATTGACATGCAACATTATATTA-GCTTTAGGTGTGCAATATATTGATTCAATATTTGT
ATATATTGCAAAATGGTCACCA-AATAAGTCTAGTTA--ACAACCGTCAT----CATAGTTACGAAATTTTTTTT----C
TTGTGTTGAAAATTTTTAAGATCTGCTCTCTTAGCAATTTTC-AATATGCAATACAGTATTATTAACTATAGTCACCACG
CTGTACATTACACCCCCATGACTTAT--TTGTTTTATAACT-GGGAGTCTGTACCTTTTGACT-CCCTTCATCCATTTCG
TGCACCCCCTA---CCCTCTTCCTCTGGCAACCACCAAT-------CTGAAACGGATTCTT---ATGGAATTAAA--TAA
GAAGAATTC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------TGTGTGAGAGGGAAAATTTAGTACCCT
>Ceratotherium_simum
TCCTCTTGCTTTGTGCTTTGTGAGGTAGATGCTTTCCTCACAGGACTTCTTC---CTGAAATGGATTCTT---TTTTGTT
TTA--------ATTGAGATATAATCGATGTACAACATTATATTA-GCTTTAGGTGTACAACATATTGATTCAATATTTGT
GTATATTGCAAAATGGTCACAACAGTAAGTCTAGTTA--ACATCCGTCAC----CATAGTTACGAAATTTGTTT-----C
TTGTGTTGAGAATTTTTAAGATCTACTCTCTTAGCAACTTTC-AATATACAATACAGTACTACTAACTATAGTCACCATG
CTGGACATTACATCCTCATGACTCAT--TTGTTTTATAACT-GGAAGTCTGTACCTTTTGACT-CCCTTCATCCATTTCA
CCCAACCCCTA---CCCCCTGCATCTGGTAACCACCAAT-------CTGAAAGGGATTCTT---ATGGAATTAAA--T--
-AAGAATTC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------TGTGTGAGAGGGAAAATTTAGTACCCA
>Myotis_myotis
GCTTCTTGCTTTGTGCTTTGTGAGGTAGGTGCTCTCCTTAGAGAA---CTTC---CTGCAATGGATTT------------
-TAAAA-----ATGGAGGTGTAACTGACATGTAGCATTATATTA-GTTTCAGATGTACAACATCGTGATTCAATAGTTGC
ATATATTGCAAAATGATCACCACAAT--GTCTCATTA--ACATCTGTCACCACACAGAATTACAACTTTTTTTTG----C
GTGTGATGAGAA---------------CTCCTAGCAACTTTC-AATGTGCAATAGAGTATTGTTAACTTTCGTGACCATG
CTGTACATTACATCCCTGTAACTTAT--TTATTTTATAAATGGAAAGTTTATACC-TTTGATT-CCCTTTACCCATTTCA
CTCACCCCCCCCCTCCCCCCACCTCTGGCAACCGCCAAT-------CTGTAATGAATTCTT---AAGGAATTAAA--TAA
GAAGAATTC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------TGTGTGAGAGGGAAAATTTAGTACCCC
>Rousettus_aegyptiacus
GGTTTTTATTTTGCGTTTTGTGAAGT--GTGCTCTCAT---AGAA---CTTC---CTGAAATGAAGTTTT---TGGTTTT
TTTTAA-----ACTGAGGTATAATTGACATGTAACATTATATTA-GTTTCAGGTGTACTATATATTTATTCAATATTTGT
ATATATTGCAAAACGATTACCACAATAAGTCTCATTA--ACATCTGTCACCACACATAGTTACAATTTTTAT-------C
CTGTAATGAGAACTTTTAAGATCTACTCTCTTAGCAACTTTC-AATATGCAATATAGTATTGTTAACTATAGTTACCATG
CTGTACATTAC----------CTTACGGTTATTTCATAACT-GAAAGTTTATACCTTCTGACT-CCCTTCACTAGTTTTA
CCCATCCCCCAA--CCTCCTGCCTCTGGCAACCGCCAAT-------CTGTAATGAATTCTT---CAGGAATTAAA--TAA
GAAGAATTC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------TGTGTGAGAGGGAAAATTTAGTACCCC
>Canis_familiaris
GCCTCTTGCTTTGTGCATTATGAAGTAGATACTCTCTTCGTAGAACTTCTTC----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------CTGCAAAGGATTCTG---ATGGGTTTAA----AA
TAAGAATTC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------TATGTGAGATGGAAAAGTCAGTACCCA
>Felis_catus
GGCTCTTGCTCTGTGCTCTGTGATGAAGATGCCCTCCTCGTAGAGCTTCTCC----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------CTGAAATGGATTCTG---ATGGGTTTAAAAATAA
GAAGAATCCGGGGCGTCCGGGTGGCTCAGTCGGTTGAGCGTCCGACTTCGGCTCAGGTCACGATCTCACGGTCTGTGGGT
TCGAGCCCCGCATCGGGCTCTGTGCTAATGGCTCAGAGCCTGGAGCCTGCTTCGGATTCTGTGTCTCCCTCTCTCTCTGC
CCCTCCCCCGTTCATGCTCTGTCTCTCTCTGTCTCAAAATAAATAAAAACATTAAGAAAAAAAAATTTTTTTTTAAATAA
GAAGAATTCTATGCGAGAGGGAAAATTTAGTACCCA
>Manis_pentadactyla
GCCTCTTGCTTTGTATTTTGTG--GTAGATGTTCTCCTCGTAGTATTTCTTC----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------CTGAAACGGATTCTG---ACAGATTCAAA--TAA
GAAGGATTC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------TATGTGAGAGGGAAAGTTCACTACCCA
>Sus_scrofa
GCCTCTTGCTTTGTGCTTTGTGAGGTAGATGCTCTCCTCATAGAA---CTTC----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------TTGAAATGAGTTCTG---ATGGGTTTAAG--T--
--AGAAGAC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------TATGAGAGAGGGAAAATTTCGTACCCC
>Bos_taurus
AC----TACCTCCTGCTTTGTGAGGTAAATGCTTCCCTCATAAA----CTTC----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------CTGAGATGAATTCTG---AAGGATTTAAA---AA
GAAGACTTC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------TCTGTGAGAGGGAAAATATTGCACCCA
>Condylura_cristata
CCTTCTAGCTCTATGCTATGTGAGACAGATGTTCTCTT---AGAACTTCTTT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------CTGAAGCAGATACTG---ATGGAGTTATA--T--
-AAGAATTC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------TATGGGAAAGGGACTGTTGAGTACCCC
>Erinaceus_europaeus
GCCTCTTGCTTAGCGTTTTGTGAGTCAGACTTTCTCCTTATAGAACTTCCTC----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------CTGAAACAGATTCTG---ATGGGATGGAA--TAG
GAAGCATTC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------TATGTAAAAGGGAAAATTTAGTACCCC
>Homo_sapiens
GCCACCTGCTTTGTGCATTGTAAAATGGATGCTGTCTTCATAGAATTTCTTC----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------CTGAAAGGGATTCTG---ATGGAACTAAA--CAA
GAAGAATTC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------TATGTGAGAGGGAAAATTCAGAACCCG



Horse112_LINE

>L1MA9
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------GTGGGGGAAATGGGGAGATGTTGGTCAAAGGGTA
CAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGTACAGCATGGTGACTATAGTTAATAATACTGTATT
GTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCACCACACACAAAAAAATGGTAACTATGTGAGGTGATG
GATA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCA
AAACATC-ACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA-------
--------------------------------------------------------------------------------
-------------------------------
>Canis_familiaris
GCTTCATAGACCTCATGATCA----TATAGAAAGAAAAG-TTTTTAGTA-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TTTTTT---AAAC--AGATGTTGTT-----------TAAGAAGAGA---TGTTT-AAGGGTA
CAAACTTGCAAGTG-GCC-CATAAATAAGTCCTGGGGATCTAATGCATGGCATAATGAATAGAGAAAACAACATTGTATT
ATAATAATCACACTTGCTAAGAGACTAGATCTTAATTA-TTTCACCAC-AAAACAGAAATGATAATTATATAACATGACA
GAGG----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------CTAACC---TCTATAATGGCAAACATATCACAATATATAAATACATCA
AATCAAC-ATGTGGTAAACTTTAAATTTACA----TATTATATGTCGAATATATTTCAATTTTTAAAAAAAA----AAGC
-TGTAAATGGGTT---CTAGCAGAATCTCAGCAGCAAGAAGCA-----------ATAACTAA------------------
-------GAACTAAAGGCCA-GAGATCAACA
>Felis_catus
ACTTTGTAGACCTCATGATCA----TATAGAAAAAAAGG-TCTTCAGTATTTTTTTATGTCTATTTATTTTTGAGAAAGA
GAGAGCATGAGTGAGGGAGGGGCAGAGAAAGAGGGAGACAGAGGCTTCAAAGCGACTCCATGCTGACAGACAAAGAACCT
AACTTGGGGCTCAAACTCATGGAACCACCAGATCATGGCCTGAACCGAAGTCAGACACTTAACCGACTGAGCCATTCATG
TGTCCCAGGTCTTTAATATTTTTT---AAGC--AGATGTTGTT-----------TAAGGAAAGATGTTGTTT-AAAGATA
CAAACTTGCAAGTG-GTA-GATAAATAAATCCTGGAGATCTAATGTATGGTGTAGTGAATATAGAAAACAATATTGTATT
ATAACCATCAAACTTGCTAAGAGACTAGATCTTAATTA-TCCCACCAC-AAAAAAGAAATGATAATTACATGATGTGACA
GAGA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TACTAACCCTCCCTGCAATGGCAATTGTACCACAATATATAAATGGATCA
AATCAAT-ATGTTGTGCACCTTAAATGTACATGA-TATTATATGTCCAATATATTTCAAT-------AAAAAA---AAGT
-TTTAAACTGGTT---CTAGCAGGAT-----------------------------------T------------------
-------AAACT--GGTTCA-AACATCAACA
>Manis_javanica
GCTTCAGAGAACTCATGCTCG----TCTAGAATAAAAAG-GCTTCTGTTC------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TCTTTT---TAGC--CAGTG----T-----------TAAGGAGAGATGTTGTTT---GAATA
GAAATTTGCAAGTA-GTA-GATAAATAAGTCCTGACAATCTAATGCATGGTATAGTGAATATAGACAACAATATTGTATT
GTCGT-ACCAAACTTGTTAAGACACTA-ATTTTAGCTA-TCCCACCAC-AAAAAAGAAAAGATAATTATGTGACATCATA
GAAG----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TGCTAATCATTGCTACAATGGTGATCTTATCATGTTAT------------
--------ATGTTGTATACCTTAAATTTAGAAAA-TATTGTA--TCAATTATATTTTAATTTTAAA----------AAGT
TTTAAAATCACTT---CTAGCAGATTCTCAGCAGCAAGTAGCA-----------ATATCTAA------------------
-------GAACTGAGGTCCA-AAGATCTATA
>Equus_caballus
ACTTGGAAGACCTCATGCTCA----TATAGAAAGAAAGG-TCTTCAGCA-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TCCTTT---AAGC--AGGTGTTGTT-----------TAAGGAGAGATGTTGTTC-AAGGGTA
TCAACTTGCACCTC-GCA-GCGAAGTAAGTCCTGGAGCACTAATGCTTGGTGTGGTGGATGTAGGCAACAATATTGTATT
ATAATCATCAAATTTACTAAGAGACTAAATCTCAATTA-TCCCACCACAAAAAAAGAAATGGTAATTATGCGACGTGATA
GAGG----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TGCTAACCATTGCTACAATG----TCATATTGCAATAGATAAATGTATCG
AATCAGCAATGCTATACACCTGAAATTTATGCAA----CATATGTCAGATCTATTTCAAT--TAAAAAAACCA---AAGC
-TTTAAATCAGTT---CTAGCAGAATCTCAGCAGCAAGTAGCC-----------AGAACCAA------------------
-------GAACTAAGAA----------AAAA
>Ceratotherium_simum
GTTTCAGAGACCTCATGCTCA------CAGAAAGAATGG-TCTTCAGTA-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TCCTTT---AAGC--AGATATTGTT-----------TAAGGAGAGAT---GTTT-AAGAATA
CGAACTCGTAACTA-GTA-GAGAAATAACTCCTGGAGATCTAATGCATGGTATAGTAAGTATAG---ACGATATTGTATT
ATAATCATCAAGTTTGCTAAGAGACTAGATCTTAATTA-TCCCATCAC-AAAAAAGAAATGGTAATTATGTGATGCAATA
AAGGTGCTTGTTACCGGCACATTGGGTCCTTGCTGTCGCCCAGGATGGAAATCAAGAGAGACAACTGTAGGATCCCAAAA
AGGGAACCCCAACTCCAGTCTCGGGAAGGCGCGGACCCACAGACACAGAAGACCGAGCTTGATGCAAACGCAAGAGGTAA
GAGGTTTACTAAGCGGAGCTCCGGGCCGACACGTATCTCTCGCAGGAGACAGAGGAGTCGACCCCGAACCTTAAAGGGCA
AGCTCTTTTNNNNNNNNNNGATAAACGTTCCCTCCTATACCAGGAATCCTTAGGGCGTGGAGGTGCCTGTCTCTAAGGTA
GTAACTTTTAAATTTTTAATATAATTTACTTCCTTCACAACAAACAGGAGTAGAAACGTAGAAGTTTATTAGCTTGTGCA
CAGGAGAAGCACCAGGCAGCCGGTGCGGAAAGGAAAGGGGCAGGTGATGGGCTCGTTAGGGAGCAGGATTGTGGGGCTTT
TATTAGGCAACGGCTGGGGAGGAGCCTTATCAGGGCATGTAGAGGTGGGGTTGTGCTTGTGCCTGCACTATCGTGTAGCA
CGCTACCACATGCGACGCATGTGTCATTAGCATGTTAGTTCTCCACCCCCAGGTGTGACTTTTACTATGGTAATGGGGCG
AGGGTCACCTTCAGTGGACTCCTGGGTGCTAGGGTGCATTCATAAACCCAGGAAAGTCCGGAGGCTTCGGAATGTGGATC
TTGGTGGTCTCTACCTGATTCCCTTAGCTTGCTGATTGGTTAGGGGCCTTATCTTGTTAGGCCAGGGGCTTTGCAGATGG
CCCTGTCTTGTTAGGCTGGTTTCTGTCTCATGCTAACCATCACTACAATG----TCATATTACAATATATAAATGTATCA
AATCAAC-ATATTATACACCTGAAATTTATACAC-CACTATATGTCAGCTATATTTCAAT---GAAAAAAAAG---AAGG
-TTTAAATCGGTT---TTAGCAGACTCTCAGCAGAAAGTAGCA-----------AGAACTAA------------------
-------GAACTAAGGTTCA-AAGATGAATG
>Sus_scrofa
GCTTCAGAGATCTCATGCTCA----GACAGAAAG---GT-CTTTTTATG-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TCATTT---AAGCTCTAAATCAGTT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------CTAGTGGAATTTCAGCTGCAAGTAGCACTGAGAACTGTAGCACTGA------------------
-------GAACTAAGTTCCCTAAGATAAACT
>Bos_taurus
GTTTCAGTGATCTCATTCTCA--------GAAAGAAGAG-TTATCAGTA-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TCCTTT---AAGCTTTCAGTCGGTT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------CCAATGGAATCTCAGCAGCAAGTAGCA---------------CTAA------------------
-------TAACTG-TTTCCA-GAAATAAATA
>Myotis_myotis
GCTTCAGAGACCTCATGCTCA----TACAGGAAGTCAGG-TCTTTAGTA-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TCATTT---AAG-----------TT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------CTAGCAGAATCTCAGTAGCAAGTAACA---------------ATAA------------------
-------GACCCAACATCCCAAAGATCAGCA
>Rhinolophus_ferrumequinum
GCTTCAGGGACCTCATGCTTATTTCTACAGAAAGTAAGG-TCTTCAGTA-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TCCTTT---AAGCTTT-AATCAGTT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------CTAGCAGAATCTCAGTAGCAA-TAACA-----------ATAACTAGGGAAGGTGTCAATCCTAG
AGGAAGTGAACAGGGGGTCT-GAGAGCAAAG
>Solenodon_paradoxus
GGTCCAGAGAACTCATGTTCA----CAGAGAAAGAAAAG-TCTTCAGTA-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TCCTTC---CAGCTGGAAATTAATT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------CTAGCAGAATTTCAGCAACAACTAGCA-----------ATAACTAA------------------
-------GAGCTAAGGTCCA-AAGATCAACA
>Sorex_araneus
GCTTCAGAGAACTCAAGCTGT----TACAGAAAGG-----TCTTCAGTA-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TCCATT---AAACTTTAAATTGGTT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------CTAGCAAAATTTCAGCAA--------------------------AA------------------
-------GAAATAAGGTCCA-AAGATCAACA
>Homo_sapiens
GCTTTAGAAA-CTCGTGCTCA----TACAGAAAGTAAAGATCTTCAATA-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------GTCTGT---GAGATTTAAATCAGTT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------CTAGCAGAATCTCAGCAATGGATAGC------------------AA------------------
-------TAGTTAAGGTCCA-GAGATCAACA



Horse116_LINE

>L1MAB_EC
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------TT
TTTTTTTTTCAGTTTTATTGAGATATAATTGACATATAACATTGTATTATGTTTAAGGTGTAC-AACATAATGATTTGAT
ATATGTA---------------------------TATATTGTGAAATGATTACCACAATGAAGTTAATTA----ACACAT
CCATCACCTCACATAGTTACAA------------------ATTTTTTT--------------------------------
---------------------------------TTTGTTTKTGTGATGAGAACTTTTAAGATC-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------TACTCTCTTAGCAACTTTCAAATATACAATACAGTATTATTAACTATAGTCACCATGCTGTACAT
TACATCCCCAGAACTTATTCATCTTATAACTGAAAGTTTGTACCCTTTGACCAACCTCTCCCTATTTCCCCCACCCCCCA
GCC--------------------------TCTGGCAACCACCAATCTATTCTCTGTTTCTATGAGTTTGG--------TT
TTTTTTTTTTAGATTCCACATATAAGTG-----AGATCATGCAGTATTTGTCTTTCTCTGTCTGACTTATTTCACTTAGC
ATAATGCCCTCAAGGTTCCATCCATG-TTGTCACAAATGGCAGGATTTCCTTCTTTTCTTTTTTATGGCTGAATAATATT
CCATTGTATA----------------------------------------------------------------------
----
>Canis_familiaris
CTCAACCAGGATGAAGCCTCAGAATTATGTTGA-----------------CGA-----AGGAGTGTGTTTTT---TAAAA
--TTTG-AAAAGA-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----TTTTCTAGTTTTATTGAGA---AATTGACATACATCACTGTC-TAAGTTTAAGGCATGC-AGCATGATGGTTTGAT
TTACTTATATTGTTTTTTTTTTTTTTGATTTACTTATATTGTGAAGTGGTTATCACAGTAAGCTGCACTGTATTCTGTAT
CCATCATCTCATATAGCTACAATAAAATGAAAATTAGAAAACTCTTCTTAAACTGTCACA-------TTGTCAACTATAC
TATAAAGATAAAACAAAACAAAGCAAAACAAACTTTGTCTTTGTGATGAGAACTCTTAAGATC-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------CTCTCTCTTAACAACTTTGCTGGATATCATACAGCAGTGTTAGCTGCAGGCGTTATGTTGTACAT
TATATGCCTAGTACT-----------TAATTGGAAGTTTGTACCTTTTGACCATCTTTCTCTAATTCCCCCT-CCCAATA
CC---------------------------TCTGGTAACCATAAATTTGGTTTCTTTTTCTAGGAGCTTTG----------
CTTTTTTATTAGCTTCCATGTATAAGCG-----AGTTCATACCGTATTTGTTTTCT-----CTGACTTATTTTATTTAGC
AGAATGCCTTCAAGG-TCCATCCGTGTTTTTTGCAGATGGTAGGATTTCC-----TTACTTTTTATGGTTGAATAATA--
-------------TAGAGCCTTTTTGAAAA----TACATATTCCTAAGCCCTGCCTCTAGAGAC--TCA-----------
-GGG
>Ailuropoda_melanoleuca
CTCAACCAGGATGAGGCCTCAGAATCAAGTTGA-----------------GGA-----GGGAGGGTATTAAG---CTGAA
--CCTTTTTAAAA---AATTATTTTTTTAAAGATTTTACTTATTTGAGAGCACGCGTGTGCATGTGCACACAAGCAGGGG
CGAGAGGTAGAGGGAGAAGGAGAAGCAGGCTCCCTGTTGAGCAGGGAGCCCAATGTTTGACTTGATCCCAGGACCCTGAG
ATCATGACCTGAGCTGAAGGCAGACGCTTAACCAACTGAGCCACTCAGGTGCCCCAAGCTGAACCTTCTTTAAAAATTTA
AAAGATTTCTAGTTTTACTGCAA---AATTTACATGCATCACTCTG-TAAGTTTAAGGCATATAAGCATGATGGTTTGAT
TTA--CA---------------------------TATATTATGAAGTGGTTTCCACAGTAGGCTTAACTGTATTCTGTAT
CCACCATCTCATATAGATACAATAAAATGAAAATTAAGAAACTCTTCTGAAACTAATGTCACATTGTGTGTCAACTATAC
TCTAAGGATA---------AAAACAAAACAAACTTTGTCTTCGTCATGAGAACTCTTAAGATCTACTCTCTTAAGGGCGC
CTGGGTGGCTTTTGGTTAAGTGTCTGCCTTCGGCTCAGGTAATGATCCCAGGGTCCTGGGATCGAGCCCCGCATCCGGCT
CCCTGCCTTGCAGGGAGCCTGCTTCTCCCTTTGCCTCTGCCTCTCTCTCTTTCTCTCTTTCATGAATAAATAAAATCTTA
AAAAAAAAAAAGATATACTCTCTTAACAACTTTCCTGGAT---ATACAGCTGTGTTGGCTGCAGGCATTCTGTTGTACAT
TACATCCCTAGTACT-----------TAACTGGAAGTTTGTGCCTTTTGACCACCTTTCTCCAATTTCCCCT-CCCAACA
CC---------------------------TCTGGTAACCATAAATCTGATTTCTTTTTC-AGGAGC--------------
--TTTTTATTAGATTCCACATATAAGTG-----AGATCATACTGTATTTGTTTTTTT----CTGACATATTTTACTTAGC
ATAATGCCTTCAAGA-TCCATCCGTGTTTTTTGCAAATGGTAGGATTTCC-----TCATTTTTTATGGCT----------
-------------GGGAGCCTTT-TGAAAA----CATACATTCCTGAGCCCTGCCCCTAAAAAC--CCATTTAGGAAATA
-GAG
>Equus_caballus
CTCAATCAGGACTAGGCCTCAGAATGATACTGA-----------------GGA-----GGGAGTGTGTTAGG---CAGAG
--CCTTTAAAAAA-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TTTTTTTTCCAGTTTTATTGAGAAATAATTGACGT----CACTGTA-GAAGTTTAAGGTATAC-AGCATAATGGTTTGGT
TTA--CA---------------------------TATATTGTGAAATGATTACCACAATAGATTTAGTTA------GCAT
TCATTACCTCATATAGATATAATAAAAAGAATAGAAAAACAAT-------------------------------------
---------------------------------TTTCTCCTTATGATGAGAACTCTTAGGATC-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------TACTCTCGTAACAACTTTGCTATGTACCATACAGCAGTGTTAACTGTAGTCATCATGCTGTACAC
TACATCCCTAGTGCTTACTTATCTTGTAACTGGAAGTTTGTACCTTTTGACCACCTTCCTCCTATTTCCCCT-TCCCCCA
CCCCCTGCC--------------------TCTGATAACCACAAATCTGATCTCTTTTTCTATGAGTTTGG----------
TTTTTTTATTAGATTCCACATATAAGTG-----AGATCATACAGTATTTGTCTTTCTCTTCCTGACTTATTTCACTTAGT
ATGATGCCTTCAAAG-TCCATCCATG-TTTTTGCAAATGGTAGGATTTCC-----TCTTTCTTTATGGCTGAATAATA--
-------------CAGAGCCTTT-TGAAAA----CATATCTTCCTAAGCCCTGCCCCTAGGGAC--CCATTCAGGAAATA
TGGG
>Ceratotherium_simum
CTCAACCAGGACTAGGCCTCAGAATCATATTGA-----------------GGA-----GGGGGTGTGTTGGG---CAGAG
--CCTTTAAAAAA-------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------A
TTTTTTTTCCAGTTTTATTAAGAAATAATTGACAT----CACTGTA-TAAGTTTAAGGTATAC-AGCATAATGGTTTGAT
TTA--AA---------------------------TATATTGTGAAATGATTACCACAATAGATTTAGTTA------ACAT
CCATCACCTCATATAGATACAATAAAAAGAAAAGAAAAAGAATTT-----------------------------------
---------------------------------TTTCTCCTTGTGGTGAGAACTCTTAGGATC-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------TACTCTCGTAACAACTTTCAAATATACCATACAGCAGTGTTAACTGTAGTCATCATGCTGTACAT
TACATCCCTAGTACTTATTTATCTTGTAACTGGCAGTTTGTATCTTTTGACCACTTTCTTCCAGTTTGGCCT-TCCCCCA
CCCCCTGCCTCTGATAACCACAAATCTGGTCTGATAACCACAAATCTGGTCTCTTTTTCTCTGAGTTTGGTGGTTTTTTT
TTTTTTTTTTAGATTCCACATGTAAGTGAGATCAGATCATACAGTGTTTGTCTTTCTCTGTCTAACTTATTTCACTTAGC
ATGATGCCTTCAGAG-TCCATCTACG-TTTTTGCAAATGGTAGGATTTCC-----TCCTTTTTAATGGCTGAATAATA--
-------------CGGAGACTTT-TGAAAA----CACATATTCCTATGCCCTGACCCTAGAGAT--TCATTCAGGAAATA
TGAG
>Sus_scrofa
TTCTACCAGGGTTAGGGCGCAGAATCATTTTGA-----------------GGA-----GGGAGTGTATTGGG---CAGAG
AGCCTTTTGAAAA-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------CACAGATGCCCAAGCCCTGCCCCTAGAAAC--TCTTTCAGGGAATA
AGAG
>Bos_taurus
CTCAACCAGTGTTAGGCCTCAGAATCATTTTGA-----------------GGA-----GAGACCATGTTGGA---CAGAG
--TCTTTTGAAAA-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------CATATATTCCTAAGCCCTGCTCCTGAACCCGGCCTTTCAGGAAAGA
TGAG
>Myotis_myotis
CTCAACCAGGGCTAGGTCTCAGAATCATATTGA-----------------GGA-----GGGAGTGTGTTGGG---CAGAG
---CTT-TAAAAA-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------CTCATATTCCCA-GCCCTACTCCTATAAAC--TCATTCAGGAAATA
TGAG
>Rousettus_aegyptiacus
CTCAACCAAGGCTAGGTCTCAGAATCATATTGAGTGTGTGTGTGTGTGTGGGG-----GGGGGTGTATTGGG---CAGAT
--GCTTTTGAAAA-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------CACATATTTCTGAGCTCTGCCCTTAGAGAC--TTATTCAGGAAATA
TGAG
>Condylura_cristata
CTCAGCCAAGACTAGGCC-CAGAGTCACTCTGA-----------------GGA-----GGGAGTGCGTTGGG---CAGAG
--CTGTTTGAAAA-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------CCACATGTTCCGACATCCTGCCCTTAGAGAC--CCATTCAGGAAATA
-GGG
>Solenodon_paradoxus
GTCAACCAGGGCAAGGCTTCAGAATTATATTGA-----------------GGA-----GAGAGTGTATTGGG---CAGAA
--CTTTTTGAAAA-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------CATGAAGTCCTAATTTCTGCCCTCAGGGGC--CTATTCAGGAAATA
TGGG
>Homo_sapiens
CTTAACCAAGGCTAGGCCTCAGAATGATTCTGA-----------------GGACGGGCTGGAGTGTGTTGGG---CAGAG
--CCTTTTGAAAA-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------CACACATTCCTAAGCCCTTCCCCTAGAGAC--TGACTCAGGAAATA
ATAG



Horse117_LINE

>L1MAB_EC
--------------------------------------------------------------------------------
------------TTT---------------------------TTTTTTTTCAG---------------------------
------------TTTT-------------------------ATTGAGATATAATTGACATATA--ACATTGTATTATGTT
TAAGGTGTACAA-CATAATGATTTGATATATGTATATATTGTGAAATGATTACCACAATGAAGTTAATTAACACATCCAT
CACCTCACATAGTTACAAATTTTTTTTTTGTTTKTGTGATGAGAACTTTTAAGAT---CTACTCTCTTAGCAACTTTCAA
ATATACAATACAGTATTATTAACTATAGTCACCATGCTGTACATTACATCCCCAGAACTTATTCATCTTATAACTGAAAG
TTTGTACCCTTTGACCAACCTCTCCCTATTTCCCCCACCCCCCA------GCCTCTGGCAACCACCAATCTATTCTCTGT
TTCTATGAGTTTGGTTTTTTTTTT------------------------------TTAGATTCCACATATAAGTGAGATCA
TGCAGTATTTGTCTTTC---------------------------------------------------------------
----------
>Canis_familiaris
AGGGAAAGCTAAAGAATCAA-TAAGAAATGGTTACC---TTTTAGGG-AGAGATTTC---CAGGCTAC----TCTCAA--
-CAAAA------TTT-------TAAATGAACTGTAATGAT--TTTTTTTTTAAACTATGAGTATAGGGAATAAAATACAC
TAGTATGTCTCTCTTTTTAAATTGGGATATAAAAAAAATAAATTGGGATATAATTGACAT-----ACATTATATTC-ATT
TCAGATGTACAACCCTAATGATTCAATATTTGTATATATTGTGAAATGAT---CACAGTAAGTCTAGTTA--ACATCCAT
TACCTTAC--AGTTATATATATATATATATATT-TGTGATGAGAACTTTTAAAGTTACTCTCTTTCTTAGTGACTTTCAA
ATATACAATACAGTATTTTTACCTATACTCACCATGCAGTACATTACAACCTCAGGACATACTTATTTTTTAACTGGTAG
TTTGTACCTTTTAACC-CCCTTTACCTATTTTCCCCA-CCCCCACTTCCTGCCTCTGACAACTGCCAATCTGTTCTCTGT
ATCTATGAGTTCATTTTTTTGTTT--TGTTTT----------------------TAAGATTCCATATATAAGTGAG----
--------------------TATGCTACTCTAAA---ATTTTTAAGCACAGTTGTAAAATATTAATGAAAATATTATTTA
GAGTTTG-TT
>Felis_catus
------------------AA-TAAGAAATGGTTACC---TTGTTAGG-GAAAATCTC--------TAT----TCTCAA--
-TTAGAATTTTTTTTG----ACATAGTGAACTGTGATAATTATTTTTTTTAAAATCATGATTGTAGGGAATAAAATACAC
TACTATATCTCTTTTT-----------------------AAATTGAGATATAATTGATAT--A--ACATTATATTC-ATT
TCAGATGTACAA-CATAATGATTCGATATTTGTATATATTGTGAAACAAT---CACAATAAGTCTAGTTA--ACATCCAT
CACCTCACATAGTTACAA-----TTTTTTTTCT-GGTGATGAGAACTTTTAATAT---TTACTCTCTTAGCAACTTTCAA
ATATACAATACAGTATTTTCACCTGTACTTGCTGTGCTGTACATTATATCCCCAGGAC----------------------
TTTGTACCTTTTGATC-CCCTTCACCCATTTTCCATA-CCCCTACCTTCTGCCGCTGACAAACACCAATCGGTTCTCTGT
ATTTATGAGTTTGATGCTGTTATTGTTGTTTTTGTTCTGTTTTGTTTTTTTTT-TAAGATTCCACATATAAGTGAG----
--------------------CATGCTAGTCTAAA---ATTTTTAAGCAAAGTTGCAAAATACTGATGAAAATATTATTTA
GAGATTG-CT
>Manis_pentadactyla
GGGGAAGGGTAAAGAATCAA-TGAGAAAAAATTACC---TTTTGGG--AAAGATTTC---CAGGCTA------CTAAA--
-CTAAAAACCATTTTTATTCATATAGTGAGCTGTGATAAT--TATTTTTTAAAATGACAGTTGTAGGGAATAAAATACTC
TAACATGTCTCTTTAG-----------------------AAATTGAGATATAACTGACATACA--ACATTACATTA-GTT
TCAGGTACACAA--------------------TGTGATTTGTGAAATAATCACCACAATA-----AGTTA--ACATCTGT
CACCTCACATAGTTACA------CATTTTTTCT-TGTGATGAGAACTTTTAAGAT---CTACTCTCTTAGCAACTTTCAA
ATATGTGGTACAGTATGGTTAACTATAGTCACCATGCTGTACATTA----------ACTTATTTATTTTATTAC-AGAAG
TTTGTACCTTTTGACC-ACCTTCACCCATTT-CCCCACCCCCTACACTCTGCTTTTGGTAACCACCAATCTGTTCTTTAT
ATCT-TTATTTGGATTTTTTAATTTTAAATTTTT--------------------AAAGGTTCTATATAT--GTGAG----
--------------------CAGGCTGCTCTAAA---ATTTTTAAGCAAAGTTGTACCA---TGAAGAAAATATTATGAG
GAGATTG-TT
>Equus_caballus
GGGGAAGGGGAGAGAATCAA-TAAGAAATGGTTACC---TTTTGGAG-GAAGATTTC---CAGGCTGC----TCTAAG--
-TTAAAAAAAAATTT-------AATTCAAACTATGATAAT--TATCTTTTAAAACCATGATTGTAGGGAGTAAAATACAC
T---GTCTCTCTTTTT------------------------AACTGAGATAGAATTGATGTACATTATATTATATTA-GTT
TCAGGCATACAA-TACAGTGATTCAATATTTGTGTATATTGTGAAATGATCACCGCAATAAGTCTAGTTA--ACATCCAT
CATCACACATAGTTACAAA----TTTTTTTTCT-TGTGATGAGAACTTTTAAGGT---CTACTCTATTAGCAACTTTCAA
ATATATAA-ACAGTGTTGTTAACTACAGTCACCACGCTGTACATTACACTCACAGGACTTGTTTATT-----ACTGGAAG
TTTGTTCTTTTTGTCT-TCCTTCATCCATTTCCCCCGCCCCTCACCCCCCAACTCTGGCAACCACCAATCTGTTTTCTGT
ATCTATGAGTTTGTTTTCTTTCCT------------------------------TAAGATTCTACATATAAGTGAG----
--------------------AAAGCTCCTCCAAA---ATTCTTAAGGAGAGTTATACCA---TGATGAAAATATTATTTA
GAGATTT-TT
>Ceratotherium_simum
GGGGAAGGGTAAAGAATCAG-TAGGAAATGGTTACC---TTTTAGGG-GAAGATTTC---TAGGCTAC----TCTAAA--
-TTAAAAAAGAAATT-------ATAGTGAACTGTGAT-----TATTTTTTAAAACCATGATTGTAGAAAATAAAATACAT
TAATGTGTATCTTTTT----------------------AAAATTGAGATATAATTGACAT-----ACATTATATTA-ATT
TCAGGTGTACAA-TATGGTGATTTGATACTTGTATGTATTGTGAAATGATCAGCACAATAAGTCTAGTTA--ACATCCAT
CATCACACATAGTTACAA-----TTTTTTGTCT-TGTGATGAGAACTTTTAAGAT---CTGCTCTCTTAGCAACTTTCAA
ATATACAATTCAGTATTGTTAACTATAGTCACCATGCTGTACATTACATTCATGGGACTTATTTATTTTATCACTGGAAG
TTTGTACCTTTTGACC-CCCTTCACCCATTTCCTCCACCCCCCAACCCCCGCCTCTGGC-ATCACCAATCTGTTCTCTGT
ATCTATAGGTTCGTTTTTTTGTTTTTTGTTGT--TGCTTTTTTTTTTTTTTTTGTAAGATTCTACATATACGTGAG----
--------------------TAGGCTACTCAAAA---ATTTTTAAGCCAAGTCGTACCA---CGATGAAAATATTTTTTA
GAGATTG-TT
>Sus_scrofa
GGGG-AGGGAGAGGAATCAA-TATGATACAGTTACCTTTTTTTAGGG-GAAGATTTC---CAGGCTAC----TCTAAA--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------ATTTTTAAACAGTCATACACCA---TAATGAAAATATTACTTG
GAGATTG-TT
>Tursiops_truncatus
GGGGAAGGGTGAGGAATCAATTAAGATATGGTTGCC---TTTTGGGG-GAAGATTTC---CAAGCTAC----TCTAAA--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------ATTTTTAAACAGAGTCATACCA---TGATGAAAATATTATCTA
GAGATTG-TT
>Myotis_myotis
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTAAA----TTTGGGG-GAAGATTTC---CAGGCTAC----TCTAAA--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------TTTTTTAACTGAAGTTGTACCA---TGATAAAAAGATTATTTA
GAGGT-GACT
>Rousettus_aegyptiacus
GAGGATGAGGAAAGAATCAA-AAAGAAATGGGTACA---TTTTGGGGAGAAGATTTC---CAGGCTAC----TCTAAA--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------AATTTT----------ACGCCA---T----------TTATTTA
GAGACTG-TT
>Condylura_cristata
GGAGAAAGGCATAGGATCAG-TAAGAAATGGTTGCC----CGTGGGC----GATTTC---TAGTTTACACTAACTAAA--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------ATTTTTTAAAAATGTCATACCA---TGTTGAAAATATTACTTT
GAGGTTGATT
>Sorex_araneus
GGGGAAGGGGAAGGAATC--------------------TTTGGGGGAAGAAT-TTTT---CAGATGAT----TCTAAA--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------ACTTTTAAATAAAGTCATGTCA---TGATGAAAATGTTATTTA
GAGCTT-ATT
>Homo_sapiens
CGTAAAGGGTAAAGAATCGA-TAAGAAATGGTTACC--TTCTTGGGA---AGATTTC---CAAGCTAC----CCTTAC--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------ATTTTTAAGCAAAGTTGTATTA---TGATGAAAATATTAGTTA
AAGATTG-TT



Horse118_LINE

>L1MAB_EC
------------------------------------------------------------------------------CC
AAACTCATAGAAAC--AGAGAATAGATTGGTGGTTGCCAGAGGC------TGGGGGGTGGGGGAAATAGGGAGAGGTTGG
TCAAAGGGTACAAACTTTCAGTTATAAGATGAATAAGTTCTGGGGATGTAATGTACAGCATGGTGACTATAGTTAATAAT
ACTGTATTGTATATTTGAAAGTTGCTAAGAGAGTAGATCTTAAAAGTTCTCATCACAMAAACAAAAAAAAAATTTGTAAC
TATGTGAGGTGATGGATGTGTTAATTAACTTCATTGTGGTAATCATTTCACAATATATACATATATCAAATCATTATGTT
GTACACCTTAAAC---------ATAATACAATGTTATATGTCAATTATATCTCAATAAAACTGAA---------------
---------------------------AAAAAAAAA--------------------------------------------
---------------------------------
>Equus_caballus
AATCCA-GAGAGTCCTTCATTAAAGAGATGGCCCTAAGCCAAACTTGGGTCTT---CAAA--GGCATAGGATCTG-----
------------AC--AGAGAGCAGATAGGTGGTTGCCAGAAACAAGGGTTGGGGAGGGGGTTGAAATGGGTGAA----G
TCGAAAGGTACAAACTTCCAGTTATAAAATAAATAAGTCATGGGTATGTAAAGTACAGCATGGTGACTATAGTTAATAAT
ACTGTATTGCATGTTTGAAAGTTGTTAAGAGGATAAATCTTAAA--TTATCATCAC---AA-GAAAAAATATTCTGTAAC
TATATATGGTGATACA--TGTTAACTAGACTTGCTATGGGGATCATTTCACAATATATGCAAATATCAAATCATTATGTT
GTACATTTGAAAC----------TAGCATAATGTTGTATGCCAATTATACCTCAATAAG---------------------
---------------------------AAAAATAA----ATAAGACCTATAGGATCTG---GAA-----------GGCCT
G-GGGTAGATGACTCCAGTTAA-CGCAGCAGCA
>Ceratotherium_simum
AATCCA-GATAGTCCTTCATTAAAAAGATGGCCCTAAGCCAAACTTGGGTCTT---AAAG-ACATATACAATCTG-----
------------AC--AGAGAGCAGATAGGTGGTTGCCAGAGGTGATGGGTGGGGGGTGGG-TGAAATGGGTGAGGGGAA
TCAAAAGGTACAAACTTCCAGTTACAAAATAAATAAGTCATGGAGGTGTAATGTACAGCATGGTGACTATAGTTAATAAT
ACTGTATTGTATATTTGAAAGTTGCTAAGAGAGTAAATCTTAAAAGTTCTCATCAC---AA-GAAAAAAAAATCTGTAAC
CATGTATGGTGATGGA--TGTCAACTAGACTTACTGTGGTGATCATTTCACAATATATACAAATATCAAATCATTATGTT
GACCACCTGAAAC----------CAACATAA---TCTACATCAATTATACCTCAACA-----------------------
---------------------------AAAACCAA----ATAAGACCTATAGGATCTG---GAGTAGGCCTGGAGAGCCT
G-GAGTAGATGACTCCTGTTAA-CATAACAGCA
>Myotis_myotis
AATACA-AGGAGCCTTTCGTTAAAGAGATGGCCCTAAGCCAAACTTGGGCCTT---CCAAGATATATAGGGTCTG-----
------------ACAGAGAGAACAGATTGGTAATTGCCAGAGGCAGGCTGTGGAAGGTGG--CAAATTGGGTGAAAAGGG
TCAAAAAGTACAAACTTCCACTTATAAAATAAATAAGTCATGGGGATGTAATGCATAGCATCAT-ACTGTAGATAATAAT
ATTGTGTTGCATATTTTAAAATGGCCAAGGAAATAAATCCTAAAAGATCTCATCAC---AA--AAAAAGAAATTTGTAAC
TATGTATGGTGAAGGA--TGTTAACTAGACTTATTGTAATGACCATTTCACAATATATAAAAATATAAAATAATTATGTT
GTATACCTGAAACTAATATAATGTAATATAATGTTGTATGATAATTATGCTTCAATTTATATATATATATATATATATAT
ATATATATATATATATATATATATATTAAAAAC------AACCAACCAATAGGATCTC----AGTAGGCCCTGATGGCAT
G-GGGTAGATGATTCTAGTTAC-CACAATGGCA
>Rousettus_aegyptiacus
AATCTA-GGAAGCCCTTCATTAAAGAGATAGCCCTAAGCCAAACTTGAGACTT---CAAAGACATATAGGATCTG-----
------------AC--AGAGAACAGATTGTTGATTGCCAGAGGCAGGATATTGAGGGTGGG-CAAAATGGATGAAAGGGG
TCAAAATATACAAATTTTCAGTTTTAA----AATAAGTCATGACGATGTAACACACAGCATGGC-TCTAAAGTTA-----
----TATTGCATATATGAAAGTTACTAAGAGAGTAAATCTTAAAAGTTCTCATCAC---AATAAAAACAAATTCTGTAAT
TATGGATGA-GATGGA--TGTTAATTAGTTTTATTGTGGTGATCATTTCACATTATATGCAAATATCAAATCATTATGTT
ATACACCCAAAAC----------TAATATAATGTTGTATATCAATTATACTTAAATAAAAATAAAAAT------------
---------------TTTTTAAATACAAAAAATA-----AAAAGACCAATAGAATCTG---GAGTAGTCCTGGATAACCT
G-GAGTAGATGACTGCAAATAA-CAAAATGGTA
>Canis_familiaris
AATCTA-GGGAGTTTCCCCATAAAGAGATAGCCCTAAGCCAAACATGGCCCTT---CAAAGACCTATAGGATGTG-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------GAGTAGGCCTGAGCAG-CT
G-GGTGAGATGACTCCCATGAA-CACAGCAGAA
>Felis_catus
AATCCA-GGGAGTTCTCCCCTAAAGAGATTGCCCTAAACCAAACATGGGCCTT---CACATACCTATAGGATGTG-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------GAGTACATCTGGACAG-CT
GAGGTTAGATGACACCCGTGAA-GACAGCAGAA
>Manis_pentadactyla
AATCCA-GGGAGCCCTCCGTTAAAGAGGTGGCCCTAAACCAA-CTTGGACCTT---CAAAGATCTTTAGGACCCA-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------GAGTAGGCCTAGAAAGCCT
CGGGGAAGATGACTTTAGTTAATCACA-CAGCA
>Sus_scrofa
AATTCA-GGAAGCCTTTCATTATAGAGATGGCCCTAAGCCAAGCCTGGGTCTT---TAAAAACCTTTAGGATCCC-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------AAGTAGGCATGGAGAGCCT
T-GGGTAGAAGACCCCA-CTAA-CACAATAGCA
>Tursiops_truncatus
AATCCA-GGAGGCCCTTCATTACAGAGATGGTCCTAAGCCAAACTTGGACCTT---CAAAAGCCTACAGGATCTG-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------GAGTAGGCATGGACAGCCT
G-GGGGAGATGACTGTAGCTAA-CACAACAGCA
>Condylura_cristata
AATCCT-GTGAGCCCTTCACTGAAGCCATGGC----------ACTTGGGCCTT---TGCGGTCACACAGAATCTG-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------GAGAA----CTGACAGCCT
G-GATCAGATGACTGAAGGTAA-CACAGCAGCA
>Uropsilus_gracilis
ATGGCTGGTGAACATTTTACTAAAGCCATGGCACTAAACTAAACTTGGGCCTT---TGAAGACCTATGGAGTCTG-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------GAGAAGAC-TGGACAGTCT
G-GATCAGAGGACTGCCAGTAA-CACAGCAGCA
>Homo_sapiens
AAGCCA-GGGTGCCTTTATT---AGAGATGGCTGTATGCCAAACTTGGTCCTT---AAAAGATCTATAGGATCTG-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------GAGTAG---------GCCT
G-GAGTAGATTACTTCAATTAA-TGCAACAGTA



Horse120_LINE

>L1MAB_EC
--------------------------------------------------------------------------------
----------TTTTTTTTTTTCAGTTT-TATTGAGATATAATTGACATATAACATTGTATTATGTTTAAGGTGTACAACA
TAATGATTTGATATATGTATATATTGTGAAATGATTACCACAATGAAGTTAATTAACACATCCATCACCTCACATAGTTA
CAAATTTTTTTTTTGTTTKTGTGATGAGAACTTTTAAGATCTACTCTCTTAGCAACTTTCAAATATACAATACAGTATTA
TTAACTATAGTCACCATGCTGTACATTACATCCCCAGAACTTATTCATCTTATAACTGAAAGTTTGTACCCTTTGACCAA
CCTCTCCCTATTTCCCC-----CACCCCCCAGCCTCTGGCAACCACCAATCTATTCTCTGTT------------------
------------------------------------------------------
>Equus_caballus
GACTAG---TGATTAGT------------AAAAAAAAAAGTCTGAAT---TTAGTGT-AAAGGATTTCCC---TGAAGAA
GGCTTTG---GTTTTTTAAGTAATTTTTTATTGAGATATAATTGACATATAAC---ATATTA-GTTTCAGGTGTACAACA
TAGTGATTCGATATTTGTATATATTGTGAAATGATTGCCACAATAAGTCTAGTTA--ACATTTGTCACCACGTGCAGTTA
CAAATTTTTTTTCT-----TCTAATGATAATGTTTAAGATCTACTTTCTTAGCAACTTTCAAATATACAATACAA---TA
TTAACTATAGTCACCATGCCGTACGTTACAGCCCCAGGACTTGTTTATTTTGTAACTGGAAGTTTGTACCTTTGGACCCA
CTTCACTCATTTTGCCTACCTCCACCTCCCA-CCTCTGGCAACCACCAATCT-------------TGAAGAAGCGTTTA-
--GGATCAAGCAGAT-ATATGCTTGAATTATGTCTCTGCCATTTACTGGCCATT
>Ceratotherium_simum
GACTAG---TGACTATT----------ACAAAGAAAAAAGTCTGAAT---ATAGCAT-AAAGGATTTCCC---TGAAGAA
GGCTTTA---TTTTTTTAAGTAATTTTTTGTTGAGAAATTACTGACATATAAC---ATATTA-GTTTCAGTTGTACAACA
TGATGATTTGATTTTTGTATATGTTGTGAAATGATCGCCACAGTAAGTCTAGTTA--ACATTTGTCACCATAGGCAGTTA
CAAATTTTTTTTCT-----TGCGATGATAACGTTTAAGATCTAC--TCTTAGCAACTTTCAAATATACAATACGGTATTA
TTTGCTGTAGTCACCATGCCATACATTAGATCTACAGGACATGTTTATTTTATAACTGGAAGTTAGTACCTTATGACCCC
CTTCACCCGTTTTGCCCACCTCCACCCCGTG-CCTCTGGCAACCACCCATCT-------------TGAAGAAGGCTTTA-
--GGATCGAGCAGAT-ATGTGCTTGAATTATGTCTCTGCCATTTACTGGCCATT
>Myotis_myotis
GACTAG---TGACTCGTTTTTTT------------AAAAGTCTAAAT---ATGGTAT-AAAAGATTTCCC---TGAAGAA
GGCTTTA----ATTTGTAAATAATTTT---TTGAGCTATAATTAACATATAACATTATATTC-GTTTTAGGTGTACAACA
---TGATTTGAAATTTGTATATATTGCAAAAAAATCACCACAGTAAGTCTAGTTA--GCACCCATC-CAACATGTAATTA
CAATTTTTTCT--------TGTGATAAGAACTTTTAAAATGTACTCTCTTAGCAACTTTCAACTATACAATAAAGGGTTA
TTAACTATAGTCAC---------------ATCCCCAGGACTTACTTATTTTATAACTGAAAGTTTGTACCTT-TGACACC
CTTCACCCATTTCCCCT-----GGACCCCCA-CCTCAGGCAAACACCAATCC-------------T---GAAGGTTTTA-
--GAATCAAGCAGGT-ATGTGCTTGAGTTATGCCTCTGCCACTTTCTGGCCGTT
>Rousettus_aegyptiacus
GACTAG---TGACTATT-----------AAAAAAAAAAAATCCAAAT---ATGACATAAAAAAATCTCCC---TGCAAAA
GGCTTTA----TTTTTTTCATAATTTTTCATTGAGCTACAATTGCCTTATAAC---ATATTA-GTTTCAGGTTTACAACA
TAATGATTCGAAATTTGTATATATTGCAAACTGATCACCATGGTAAGTCTAGTTA--GCATCCCTC-CAACATGTAATTA
ATAATTTTTTTTG------CATGATGAGAACTTTTAAAGTCTACTCTCTTAGCAGCTTTCAAATATACAACACAGTGTTA
TTAGCTATAGTCACTACGTTGTACATTACATCCCTAGGACTTGTTTATTTTATAACTGGAAGTTTGTACTTTATGACCAT
CTTCACTCATTTATCC------CAACCTCCA-CCTCTGGCAACCACCAGTCT-------------TGAAGAAGGCTTTA-
--GAATCAAGCTGATAATGTGCTTGAGTTATGTCTCTGCCATTTACTGGCCCTT
>Canis_familiaris
TACTCG---TGACTATTTTTTTT--------------AAGCCTGAAT---ATAATAT-ACAGGATTTCAC----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------TGAAGAAGACTTTG-
--GAATCAAGCAGAT-ATGTGCTCTAATTACGTCTCTGCTATTTACT----ATT
>Felis_catus
CACTAG---TGACTATTTTT----------AAAAAAATATTCTAAAT---ATAACAT-AAAAGATTTCCC----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------TGAAGAAGGCTTTA-
--GAACCAAGCAGAT----TGCTTGAATTATGTCTCTGCCATTTACTAGCCATT
>Manis_pentadactyla
---------TGACTTTTTTTTT---------------AAGTCTGAGT---ACTGCGT-AAAGAATTTCTC----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------TGAAGGAGGCTTTG-
--GAATCCAGCGGTT-TTGTGCTAGAATTATGTCTGTGCCATTCACTGGCTGTT
>Sus_scrofa
GACTAG---TGACTTTTTTTCTTTTTTTTTTTTTTTTACATCTGAAT---ATAGCAT-GAAGGTTTTCCC----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------CAAAGAAGGCTTTA-
--GAATCAAGCAAAT-TTGTGCTGGAATTACGTCTCTGCCATTTACTGACCATT
>Tursiops_truncatus
GACTAG---TGGCTTTTTTTTTTTTTTTTTTTTT---ACGTCTGAAT---ACAGCAT-AAAGGATTTCCC----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------TGAAGAAGACTTTA-
--GAATCAAGCAGAT-ATGTGCTTGAATTATGTCCCTGCCATTTACTGGCCATT
>Condylura_cristata
GACTAG---TGAGCAT-------------CAAAAGGAAAATC--AATCAAATAACAT-GAAGGATTT-CC----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------TGGAAATGGC-TTA-
--AAAGCAAGCAGAT-CTGTGCTTGAATTATGTCTCTGCCATTTAATGATCCTT
>Uropsilus_gracilis
CACTAA---TGACTGT-------------CAGAGGGAAA-----AGGCAAATAAAAT-AAAGCCTTT-GC----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------TGG--ATGACTGTA-
--AACTCTATT--TC-CAATGTTTGAATTATGTCTCTGCCATTTACTGACCATT
>Homo_sapiens
GACTGGCCATGACTTTTTTTTTTT-------------AAGTCCAAAT---ATAGCAT-AAAAGATTTCCC----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------TGAAGAAGGCTTTA-
--GAATCAAGGAGAT-ATGTGATTCAATAATGTCTTTACCATTGACTGGCCATT



Horse125_LINE

>L1MAB_EC
--------------------------------------------------------------------------------
--------TTTTTTTTTTTC----AGTTTTATTGAGATATAATTGACATATAACATTGTATTATGTTTAAGGTGTACAAC
ATAATGATTTGATATATGTATATATTGTGAAATGATTACCACAATGAAGTTAATTAACACATCCATCACCTCACATAGTT
ACAAATTTTTTTTTTG----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------
>Equus_caballus
CTGTTC----TGTATGACTATTTTT---TCT-----------AATATACCCAAAAGCAG-CCACCATCAGCTC---AAAA
GTGTA---CTCTTTTTTTCCTCCTAGTTTTATTGAGAAATAATTGATATACATCACTGTAGAA-GTTTAAGGTGTACAAT
ACGAGGCTTTGAATTG--CATATATTGTGAAATGGTTACCACGGTAGGTTCAGCTA--CCATCCATCTTCTCATATAGAC
ATAAC--------------AAAAGTGTA---TTCT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------TGTTACTCCATTTCTGCATGTGTTCATCGGCATCCTGGTCGCTAAA
>Ceratotherium_simum
CTGTTC----TGTATGACTATTTTT--TTCT-----------AATATACCCAAAGGGTG-CCACCATCAGCTC---AAAA
ATGTA---CTCTTTTTTTC-----AGTTTTATTGAGAACTAATTGACATACATCACGGTATAA-GTTTAAGGCATACAGA
GTGATAGCTTGATTTA--CATGTATTATGAAATGATTACCACACTAGGTTCCGCTA--ACATCCATCTTCTTGTATAGAT
ACAAT--------------AAAAATGTA---TTCT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------TGTTACTCCATTTATGCACGTGCTCAGGGGCATCCTGGTCACTAAA
>Myotis_myotis
CTATTG----TGTATGACTATTTTT---TGT-----------AATATACCTAAAAGTTC-CTACCATAAGTTC---TAAT
ATGTA---TTTTTCCT--------AGTTTTATTGAGAAATAATTGATATGT--CACAGTGTCA-GTGTAAGGTGTACAGC
ATGATGATTTGATTTA--CATATACTGTGAAATGA-TACCATAATA-GTTCAGTTA--ATATCCATCTTTTCATATAGAT
ATGAT--------------AAAAATGTA---TTCT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------TGTTGTTCCATTTATGCATGTGCTCATGGGCATCTTGATCACTAAA
>Rousettus_aegyptiacus
CTGTTT----CGTATAACTTTTTTTATTTTT-----------AGAAGACCTAAAATTTC-CTACCATCAGCTC---AAAA
ATGTA---TTTTTTTTC-------AGTTTTATTGAGAAATAATTGACATACAA-ACAACATAA-GTTTAAGGTGTATGGC
ATGATGGTTTGATTTA--CATACATTTAAAAATAATTACCACAATAGGTTCA------ACATCCATCTTCTCATACATAT
ATGAT--------------AAAAATGTA---TTCT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------TGTTATTCCATTTGTGTAGGTGCTCATGGGCATCCCAATCATTAAA
>Canis_familiaris
CTGTTTGCTCTGTGTGATTCTACTT-TATCT-----------AACATGCTCAAAAGGTCTTCACCATCAGTTC-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AAAA-TGTA---TTCT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------TGTTACTCCATTTATGCATGTGCTCAGGGGCATCCTAGGTACTAAA
>Felis_catus
TAGTTTGCACTGTATGACTCTATTT-TATCT-----------AACATGCGTAAAAGGTCCCCACCATCAGTTC-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AAAAATATA---TTCT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------TGTTACTCCATGTATGCATGTGATTTTGGGGATCCTGGTCACTAAA
>Sus_scrofa
CTGTTTGTTCTATGTGATTCTCTTTTTTCCT-----------AACATACCTAAACACAT-CCACTCTCAACTC-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AAAGATGTA---TTCT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------TATTATTCCACTCATGTATGTGCTCACAGGCATCCTGGTCACCAAA
>Tursiops_truncatus
CTGGTC----TGTATGACTATTTTT-TTCCT-----------AATGTACCTAAAAAGTT-TCATCCTCAACTC-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AAAAGTATA---TTCT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------CATTACTTCATTTATGCATGCACTCATGGGCATCCTGGTCACTAAA
>Condylura_cristata
CTGTTC----TGGAAGACTCTGCTT-ATTCT-----------GAGGC-------------CCACCATCAGCTC-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AAAATTGTA---TTCT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------CCTTATTCCATTTATGCATGTGGTCATGGGTATCTTGGTCACTGAG
>Sorex_araneus
CTGTTT----GGCATGACTTTACTT-ATTCTAACCATAAAAAAATAGTCTAAAAAAGTC-CCATCATTTGCTC-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AAAATTAAA---TTC----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------TTACTCCATTTTTACTTGTGATT------GTCTGGTTCAGTAAA
>Homo_sapiens
CTGTTCGTTCTGTATGATTTTATTC-TTTCT-----------AATATACCTAAACAGTC-CCACAATTAGCTC-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------ACAAATATA---TTCTCTTGCTTTTGATTGAGTATTTTCCCCAAAGTTCATGTGTTGGAAA
CTTGATCCTCAATGCACAATGTTGAGAAGTCAGACCTTCATGAGATGATTAGATCATGAGGACTCTGCCCTCATGGGTAG
ATAAATGCTGTTATCTCTGGGGTGGTTTAATGATCGGAGTAGGTTTGTTGTAGAAGTGAGTTCAGCCCTTTTGTTCTTTT
TTGCTCTTCTGCCTTTTGCCACAAGATGACACAATAAGAAGTCCCTCTCAAGATGGGCTCCTTGATCTTGGACCTTCCAG
CCTCCAGAAAAGTAAGAAATAAATATCTGTTCTTTATAAATTACCTAGTCACAAGTATTCTGTTACAGCAGCAGAAAATG
GACTAAGATATCTCATTACTCAATTTATGCATGTAGTCATGGACATCCTGGCTACAAAA



Horse126_LINE

>L1MAB_EC
--------------------------------------------------------------------------------
----------------------------------------------TATATGTGGAATCTAAAAAAAAAAAACCAAA-CT
CATAGAAACAGAGAATAGATTGGTGGTTGCCAGAGGCTGGGGG------GTGGGGGAAATAGGGAGAGGTTGGTCAAAGG
GTACAAACTTTCAGTTATAAGATGAATAAGTTCTGGGGATGTAATGTACAGCATGGTGACTATAGTTAATAATACTGTAT
TGTATATTTGAAAGTTGCTAAGAGAGTAGATCTTAAAAGTTCTCATCACAMAAAC-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------AAAAAAAAAATTTGTAACTATG
TGAGGTGATGGATGTGTTAATTAACTTCATTGTGGTAATCATTTCACA------ATATATACATATATCAAATC--ATTA
TGTTGTAC---ACCTTAAACATAATACAATGTTATATGTCAATTATA---TCTCAATAAA-------------ACTGAAA
AAAAAAAA------------------------------------------------------------------------
--
>Canis_familiaris
CAACTCTTCACTCAGT-CCCTTAG--ACTTAGCCATTCCCTTCCATAACTCTATGGCTTTGAATA------TAAACACAC
-ACACACACACAC-----------------------------------------------------TTGTAACCAAA-CT
CATAGCTACAGAGTACAGATTGGGAGTTGCCAGAG-CTAGCGG------GTGAACAAAATGGGTGAAGA-GTGTCTGAAG
GTACAAACTTCCAGTTATAAAATAAATAAATTAAGGATGATTTAAGTACAGCATGTTGGCAACAATTAACAATAATGTAT
TGCATATTTGAAAGATGGTAAAAA---AGATTCTAAAAATTTT-ATCACA------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------AGAAAAAAACATTGAAGCAATG
TATGGTGACAGA--TTTTACATGACTT-------GTGATCATTTCACA------ATACATACAAATATCAAATCAAACTA
TG-TGTAC---ACCTGAAAC-TAACAGAATGTCAGATATCAATTATAAAATAAAAATAAATAAATAAATAAATAAATAAA
TAAATAAA---TAAATATTTCCCT---AAA-----CTCTCCTTGGGGCATCTGCAATCATCCTGAAAGCTCACTAATTCA
TT
>Felis_catus
CAACTCTTCACT-AATTCCCTTAG--CCTTAGTCATTCACTTCCATAACTCTATAGCTTTTAATA-CA---CACCCACA-
-------------------------------------------------------------------CGTAAGCAAA-CT
CATAGATACAGAGAACAGATTGGGAGTTGCCAGAG-TC----------------------------AGG-----------
------------------------------------------------------------------TAACAATACTGTAT
TGCATATTTGAAAATTGCTAAAAGAGTAGATCCTAAAAGTCTTCATCACATGAAAAAAAAAATTTTTTTATTTTTTAAAA
AAAATTTTTTTTTCAACGTTTATTTATTTTTGGGACAGAGAGAGACAGAGCATGAACGGGGGAGGGGCAGAGAGAGAGGG
AGACACAGAATCGGAAACAGGCTCCAGGCTCTGAGCCATCAACCCAGAGCCCGACGCGGGGCTCGAACTCACAGACCGCG
AGATCGTGACCTGGCTGAAGTCGGACGCTTAACCGACTGCGCCACCCAGGCGCCCCGAAAAAAAAATTTTTGTAACAATG
AATGTTGATGGA--TGTTAACTGGACTT------GAGATCATCTCCCA------ATATATACAAATATTCAATCAAACTA
TGTTGTAC---ACCTGAAAT-TAATATAATGGTGGATGCCAATTATATAATCAAAATAAA----------------GAGA
CAAATAAA---TAAATATCTTCCT---ACA-----CTCTCCTCGGGGCATCTGCAATCATCATGAAAGTTCGCTTATTCA
TC
>Manis_pentadactyla
CAAGTCTT----------------------------------CCATATCTCTATACCTTGGATTG-TC---TAAATATAT
-ATATACATATAATATATAATATATATATTTATATATACTTAT-----------------------ATTTAAATAAG-CT
CATAGATACAGAGAACATAATGGTGGTTGCCAGAG-G-AGGGGTACACAGGATGCAAAATGGGTAAAGG-GGGTCAAAAG
GTACAAACTTCCAGTCGTAA----AATAAATCATAACGATAAAGTGGACAGCATGGTGGCTATAGTTAACAATACTGAAT
TGCGTATTTGAAAGTTGCTAGAAGTGTAGATCTTAAAAGTTCTCATCACC------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------AGAAAAATTATTACAACTACA
TATAATGACAGA--TGTTAATTAAA---ATTGTGGTGATCATGTAGCAATATATATATATACAAATATCAAATC--ACTA
TGTTGTAT---ACCTGGAAC-TAATATAACATTGTATGTCTATTTTAC--CTAAAATAAA--------------------
----TAAA---TAAATATCTTCCT---ACA-----CTCTCCTCAGG-TATCTACAATCATCATGAAAGATCACTTACTCA
CT
>Equus_caballus
CATGTCTTCCCTTAATTCCTTTAG--CCTTGACCATTAGCTCCCATATCTCCATGGC---------TC---TGAATATCT
AATATATACATAA-----AATATAT--------------TTTT--------------------TTAAAAAAACCAAAGCT
CATAGATACAGAGAACAGATGGGTGG-TGCCAGAG-GTAGGGG------GTGAGAAAAATGGGTGAAGG-GAGTCAAAAG
GTACAAAATGCTGGTTATAAAATAAATAAGTCACAGGGATATAATGTACAGCATAGCAACTAAGGTTAA-AATACTGTAC
CACATCTTTGAAAGTTGCTAAGACAGTAGTTCTTAAAAGTTCTCATCACAG-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------GAAAAAAAATTCTGTAACTATG
TGTGGTGATAGA--TGTTGCCTAGACTTATTGTGATGATCATTTTACT------GAATAAACAAATACTGAGTC--ATTA
TGTTGGACACTACCTGAAAC-TCATATAATGCTGTATGTCAATTGTA---CCTCAATAAA--------------------
CACATAAA---TAAATATCTTTCT---ACA-----CTCTCCTTAAG-CATCTGCAATCATCATGAAAGCTCACTTACTCA
TT
>Ceratotherium_simum
CAAGTCTTTCCTTAATTCCCTTAG--CCTTGACCATTAGCTCCCATATCTCTATAGCTTTGATTG-TC---ACAATATAT
AAAATACGTATAA-----AATGTAT--------------TTTT-----------------------TTGAAACCAGC-CT
CACAGATAGACAGAACAGATTGGTGATTGCCAGAG-GTAGGGG-------TCGGTGAAATGGGTGCAGG-GGGTCAAAAT
GTGCACACTTCCGTTTATAACATAAATAAGTGATGGGGATGTAATGTACAGCATGGCAACTATGGTTGATAATACTGTAT
TGCATATGTGAAATTTGCTAAGAGAGTAGATCTTAAAAGTTCTCATCAC-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------AAGAAAAAAATCGTAAC----
TGTGGTGATAAA--TGTTAACTGGACTTATTGTGGTGATCATTTTGTA------AAATATACAAGTCTCGAATCA---TA
TGTTGTAT---ATATGAAAC-TAATATAATGTTATATGTCAATTATA---CCTCAATAAA--------------------
-----------TAAATATCTTTCT---ACA-----CTCTCCTTAGG-CGTCTGCAATCATCATGAAAATTCACTTACTCA
TT
>Sus_scrofa
CACATCTTCCCTTAAGCCC--TGG--CCTTGACTATT-----CCATTTCTCTATAGCTTTGATTA-CC---CAAGTTTCT
---------------------------------------TCCA-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------ATA-----CTCTCCTTAGG-TATCTGCAATCATCAGGAAAGTCCACTTACTCG
TG
>Bos_taurus
CA-GTCTTCCCTTAATGCCCTTGA--CCTTGAACATT-----CTGAATTTCTATAGCTTTA-----TC---TAAATATCT
---------------------------------------TCTT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------ACA-----CTCTCCCCCAG-CTTCTGCAATTGTCACAAAAGTTCACTTACTCA
TT
>Myotis_myotis
AAAGCCTTCCCTTTATTCCCATGG--CCTGGACCATTAGCTTCCTTGG-----TAGCTTTTTTTTGTC---TAAATATGT
----------------------------------------CCT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------ACA-----CTCTGTTTAAT-GAGTTACAGACATAAAGAAAGTTTACTTACTCA
TT
>Rousettus_aegyptiacus
CAAGTCTTCTCTTAATTCCCTTGG--CCTTGGCCACTAGCC------------AAGCTTCATTTC-TC---TAAATATTT
---------------------------------------TTCT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------ACA-----CTCTCCTTAAA-CATCTGCAATCATCATGAAAGT----TTATTCA
TT
>Condylura_cristata
CAAGTCTTCCATTAATTCCCTTAG--TCTTGACCACTAGCTTTCAAATCTCTATAGCTTTAATTA-TC---TAACCATTT
---------------------------------------TCCT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------ACA-----GTCTCCATAAG-CATCTGCA-TAATCATGAAAGTTTACTTACTCA
TC
>Solenodon_paradoxus
CAAGTCTTCCATTAATTTCTTTAA--CCTTGACAATTAGCTTCCATATCTCTATGGCTTTGATTG-CC---TAAATAACT
---------------------------------------TCCC-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------ATACGACATTCTTCTTAGG-CATCTGCAATCATCATAAAAGTTCACT-ACTCA
TT
>Homo_sapiens
CAAGTCTTCCCTTAATTGCCTTATACCTTTCACTATTAGCTTCTATACCTCTATAGCTTTGATTG-CC---TTAATATCT
---------------------------------------TCCT-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------ATA-----CTCTATTCAGG-CACC--------TCATAAAAGTTTACTT----A
TT



Horse127_LINE

>L1MAB_EC
---------------------------------------------------------------------------TCATA
GAAACAGAGAATAGATTGGTGGTTGCCAGAGGCTGGGGGGTGGGGG----------AAATAGGGAGAGGTTGGTCAAAGG
GTACAAACTTTCAGTTA---------------------TAAGATGAATAAGTTCTGGGGATGTAATGTACAGCATGGTGA
CTATAGTTAATAATACTGTATTGTATATTTGAAAGTT-------GCTAAGAGAGTAGATCTTAAAAGTTCTCATCACAMA
AACAAAAAAAAAATTTGTAACTATGTGAGGTGATGGATGTGTTAATTAACTTCATTGTGGTAATCATTTCACAATATATA
CATATATCAAATCATTATGTTGTACACCTTAAACATAATACAATGTTATATGTCAATTATATCTCAATAAAACTGAAAAA
AAAAAA--------------------------------------------------------------------------
--------
>Canis_familiaris
TTTCCTACAACCTCCACTTGTGGAAGTACA----ACCCAACCTTTAAGATCCAG---TGAA--GT-GATCTC--------
---ACAGAAAACCCACTGGTGGCTGCTACAGGT---GGGGTAAGGGTGGGGGGTGCAAAATGGGTAAAAGATGTCAAAAG
GTTCAAACTTCCCGCTAGAAAATAAATAAGTCAAAAATTAAAATAAATAAGTCATGGGGATGTCATGTACAACATGACGA
CTATAGTTCATAATGCTGTATTGCATATTCGAAAGTT-------ACTAAGAGAGAGGATCTTAAAAGTTCGCATCACA--
---AGAAAAAATATACTTAACTATGTGTGCTGATGGC--TGTTAACAAGACTTATGGTGGTGATCGTTTTGCAATATATC
CAAAGATTGAATCATTATGTTGTACACCTGAAAC-TAATATAA-AATATATGTCAATTATACCTCAGTTTAT-----AAA
AAAG-----TG-GAAGTCTATCTC---CTCTAAGAAAAAAAA----TTTC-CCAATTCTCTCTTTATGC-CCCACTATCC
---AGTCT
>Felis_catus
TTTCCTACAACCTCCACGTGTGGAAGTACA----ACCCAGCCTTTAAGGTTCAG---TGAA--GT-GACCTC--------
---GCAGAACACACACTGGTGG-TGCTGGGCAT---GGGGTGGGGG--------------TGGGTGAAAGAGGTCAAAGG
TTTCAAACTTCCAGTTA---------------------TAAAATAAGTAAGTCGTGGGGATATCATGTACAGCACTGTGA
CTATAGTTAGTAACACTGTATTGCATATCTG-AAGTTATATGAAGCTAAGAGAGAAGATCTGACAAATTCTCATCACA--
---AGAAAAAAGA-CTTTAACTATGTGTACTGAAGGA--TGTTAATTAGACTTACTGTGGTGATCATTCTACAACATATA
CATATATTGAATCATTACGTTGTGCATCTGAAAC-TAATGTAATGCTGTATATCAATGATATCTCAATTTTCAAAAAAAA
AAAG-----TGCAAAGTCTATCTC---TCCTTAAAAAAAAAA----TCTC-CCAATTC--TTTTTATGC-CCCACTATAC
---AGTCT
>Manis_pentadactyla
TCTGCTACAGTCTCCATTTCTAGAAGTACAACCCACCCATCCCTTATGGGCCAT---TGAA--GTCTACTGC--------
------AAGAACAGACTGGTGGCTCTCAGAGGCCGGGGGTGAGGAGCAGAT-----GAAATGGG-GAAAGGGGTCAGAAG
GTGCAAATTCCCAGTAA---------------------TAA----AATAAGTCATGACGATGCAAGGTACAGCATGGTGG
CTATAGTTAATAATATTGCACTGCATCTTTGAAAGTT-------GCTAAAAGAGCAGATCTTAATAGCTCTCATCACA--
---AGAAAAAAT--GTGTAACT--GCGTGGTAACAGA--TTGTAACTAGTCTTATTGCAGTGATCATTTTGCAAAACATA
CATACATGAGATCATTATATTGTACACCTGAAAC-TAAC--AATGCTGTATGTCAATTATACCTCAATTCAA--AGAAAG
AAAG-----TGAAAAGCCTATCTC---CTCTAAGAAAAAAAAAATGTTTC-CCAATTCTCTTTTTATGT-CCCACTATTC
---CTTCT
>Equus_caballus
TTTACTACAATATCCATTTGTGGACGTAAA----ACCCATCATTTAAGGCCCAT---TGGA--GTCTACCTC--------
---AGAGAGCACAGATTGGTGGTTGCCTAAAGC---GGCAGTGGGGAGGGTAAGGCATAATGGCTGAAGGAGATCAAAAG
GTACAAATTTTCAGTTA---------------------GAAGATAAATAAGTCATGTAGATATAATATACAGCATGGTGA
CTATAGTTAATAATACTGCATTGCATATTTGAAAGTT-------GCTAAGAGAACAGATCTTAAAAGTTCTCATCA----
--------------TTGTAACTATCTGTGGTGATGGA--TGTTAAGTGGACTTATTATGGTGATCATTTTGTAATACATA
CACACATCAAATCGTTATGTTGTACACCTGAAAC-TAAT---ATGCCATATGTCAATTATACCTCAATAAAA-GAAAAAG
AAAA-----TGAAATGTCTATCTC---CTCTAAG--AAAGATTTTTTTTC-TCAATTCTCTTTTTATG--CCCACTATCC
GGAATTCT
>Ceratotherium_simum
TTTACTACAATCTCCATTTGTGAAAGTACA----ACCCATCGTTTAAGGCCCAT---TGGAAAGTCTATCTC--------
---ACAGAAAACAGATGGGTGGTTGCCAGAGGT----GGGGGTGGGAGGATAAGGCAAAATGGGTGAAGGGGGTCAAAAG
GTACAAATTTTCAGTTA---------------------GAAGATACATAAGTCATGGGGATATAATGTACAAGATGGTGA
CTATAGTTAATAACATTGTATTGCATATTTGCAAGTT-------GCTAAGAGAGTATATCTTAAAAGTTCTCATCATA--
---AGAAAAAAA--TTGTAACTACCTGTGGTGATGGA--TGTTAACTAGACTTATTATGGTGATCATTTTGTGATATAAA
CATACATCAAATCATTATGTTGTACACCTGAAAC-TAAT--------ATATGTCAATTATACCTCAACAAAA-GAAAAAG
AAAG-----TGAAAAGTCTATCTC---CTCTAAG---GAAATTTTTTTTC-TCAATTCTCTTTCTATGC-CCCACTATCC
---ATTCT
>Desmodus_rotundus
TTTCCTACAATCTCCATTTATGGAAGTACA----AGCCATC-TTTAAGGCCCCC---TGAAAAGTAGGTCTC--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------TGCTAAG---AAGAAGTATTTCC-CCGATTCTCTTTTTGTGC-CCTACTCTCC
---ATTCT
>Pteropus_vampyrus
TTTCTCACAATCTCCATTTATGGAATTACA----ACCCATCCTTTAAGGCCCAT---TGAAAAGTCTCTTTC--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------CTTTAAG---AAGAATTCTTTTC-CCAATTCTCTTTTTATGC-CCCACTATCC
---ATTCT
>Sus_scrofa
TGTACTACACTCTCCATGTAGAGAAGGACA----ACCCACACTTTATGGCCCAT---TGAAGAATCTTCCTC--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------TGCTCAG---AAGAATTATTTTCTCCAATTTTCCTTTTATGC-CCCACTGTCC
---ATTCT
>Bos_taurus
TTCACTACAACTTTCATGTACAGAAGGACA----ATCCACCCTTTATGGCTCAT---TGAAAAGTCTACCTT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------TCCCGAG---AAGAATAATTCCC-CCAATTTGTTTTTTATG--CCCACTATCC
---ATTCT
>Condylura_cristata
TTAACTGTAATCTCTATTTACAGAAGTACA----GTCTATATTTTCAGACCCAA---TGAAAAGGCTGCCTC--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------CTACAAG---AAGAATACATTTT-CCACCTCT-TTTTTATGT-CCCACTGTCC
---AACCT
>Sorex_araneus
CTT-CCCCAATC----------------------ATCCATCTTTTGAGACCCAC---TAAAAAGTCTGCTTC--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------CTCCGAG------AACTATCTTT-CCATTTCTCTTTGAATCCTCCCTTTGCCC
ACTGATCT
>Homo_sapiens
CTTACTACAATCTCTATTTACGGAAATATA--------------TAAGGTCCAT---TGAAAAGTCTGTCTC--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------TCCCAAG------AATTCTTTTC-CCAATTCTCTGTTTATAC-CCCACCATTC
---ATTCT



Horse130_LINE

>L1MAB_EC
--------------------------------------------------------------------------------
----------------------------TTTTTTTTTTTCAGTTTTATTGAGATATAATTGACATATAACATTGTATTAT
GTTTAAGGTGTAC-AACATAATGATTTGATATATGTATATATTGTGAAA-------------------------------
-----------------------------------------------------TGATTACCACAATGAAGTTAATTAACA
CATCCATCACCTC-------------------------------------------------------------------
----------------------------
>Canis_familiaris
AAAC-------TAAT----------------------GAATAAA----AGTTAAATTCATTTAATAG----TATTGAATA
AATTA---TTCATATTTCATAAATA----------------TTTTTATTGGGGTATAATTGATATATAACATTATACTG-
GACTCAGGCGTAT-AACATAATGATTCTATACTTGTATATATTGCAGATTGATTACCATGAGTCTGGTTAACATCCGTAT
TCAGTAAATTTATTGAATGTCAGAAATATATTGAATATCAGAAATATATTGAGTGATTACTATAAGAAGTCTAGTTAACA
----------------TTGATATTCAGTAAGTA---TATTGACTGTAAAAATG-TGTACACCATTTTTAC----------
-------CATTGGCATTCTGAGAAAATA
>Felis_catus
GAACATAAGTATAATT---------------------GAATAAA----AGTTCAATTCCTTTAATAG----TATTGAATA
AATCC---TTTATATTCCATAAATA----------------TTTTTATCGAGGTATAACTAATACAT-----TATATTA-
GATTCAGATGTATAAACATAATGATTTGATATTTGTGTATATTGCAAAA-------------------------------
-----------------------------------------------------TGAATACCTTGGTAAGTCTAGTTAACA
----------------CTGATACTCAATAAATA---TATTGAAT----AAATG-TATAAACTGTTTCTAC----------
-------CATTGGCATTCTCAGAAAATA
>Manis_pentadactyla
NNNNNNNNNNNNNNNN---------------------NNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNN---NNNNNNNNNNNNNNNNN----------------NNNNNNNNNNNNNNNNNNNNNNATATAACACTATATTA-
GTTTCAGGTACAC-GAAATAGTGATTCAGCATTTGAATATATTACAAAA-------------------------------
-----------------------------------------------------TGATCACCACAGTAAGTCTAGTAAACA
T---------------CTAATATTCAATGAATT---TATTGAAT----AAATG-T------TATTTTTAC----------
-------CATTGGCATTCTTAGAAAATA
>Equus_caballus
GAACATAAACATAATT---------------------GAATAAA----AGTTCAGT---TTCTTTAGTTAATATTTAATA
AATCA---TTCATATTCTATAAATA----------------TTTTTATTGTGGTATTATCGACATAT-------TGTTA-
GATTCAAGTGTAC-AATATAAGGATTTGATATTTGT---------GAAA-------------------------------
-----------------------------------------------------TGATCACAAT----AATCTAGTTAACA
T---------------CCGATATTC--TAAATA---CATTAAAT----AAATG-TATAAATTATTTTTGC----------
-------CAATGGCATTCT-AGAAAACA
>Ceratotherium_simum
GAACATAAATATAATT---------------------GAATAAA----AGTTCGATTTCTTTAATAGTCAATACTTAATA
AATCA---TTCATATTCTATAATTA----------------TTTTTATTGTGGTATTATTGACATATAACACTGTATTA-
GATTCAGGTGTAC-AATTTAATGATTCGGTATTTGTATATATTGTGAAA-------------------------------
-----------------------------------------------------TGATCACCGTAAT-AATCTAGTTAACA
T---------------TAGATATTCGGTAAATA---CATTGACT----AAATG-TATAAAATATTTTTAC----------
-------CATTGGCATTCTTAGAAAATA
>Sus_scrofa
TAACATTAATACAGTG---------------------GGGTAAA----AGTTCA-----TTTTATAGTTAATATTTAGTA
AATCA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------TTCATATTCAGTAAG-----CATTGAAT----AAGTA-TGTAAGTTATTATTATTATTTTTTTT
TTACCAACATTGGCATTCTTAGAGAATA
>Bos_taurus
CGACATAAATATAAGT---------------------GGCTGAA----AGTTTGATTAATTACATAGTTAATATTTAAT-
---CA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------TTCACATTCAATAAACA---CATTGAAT----AGGTG-CATGTA--ATTTTTAC----------
-------CATTAGCATCCTTAGAAAAGC
>Myotis_myotis
CAACATAAACTT-------------------------GGATGAA----AGTGCA-----------GTTTGCACTTTAAAA
A--CT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------CGG-TGTTCAAGAAACA---TATTGATG----ACATG---TATGCTATTTTCAG----------
-------CACC--TTTGCTGGGAAAATG
>Rousettus_aegyptiacus
GAACGTGAATATAATC---------------------GGGTAAA----GGTATAGTTCCTTTCAGACTCCATATTTAATC
ACCCG---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------CTCCTGCTCAATAAACA---CACCGC------ACATG-TGGATGTGATTGTTAC----------
-------TTCTGGCGTTCGTAGGACATA
>Condylura_cristata
GAACATAAATGTACTT---------------------AAATAAAATTCAGTTCA-------CCATGCACAGTATTTAATA
AATCG---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------TTCCTATTCAATGCACA---TAGTTAAT----ACCTGCTTTTTATTACCCTCAC----------
-------CAGTGACTTTCTTAGAAAACC
>Solenodon_paradoxus
GAATATACATGCAATTGAAGGCAATTTGAACGCAGTCGAATGCA----GTTTCAGTTCATTTTATATTTAGTATTTAATA
AATTA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------TCTACATTCAGTA-ACA----ATG---------AATA-AATAATTTTTTTTTAC----------
-------CATTGACAGTCTTAGAAAATA
>Homo_sapiens
GAACATAAATATAATT---------------------GAATAAA----AGTTCA-----TTTCATATTCATTATTCAACA
AATCA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------TTCATATTGAATAAATA---CATTGCAT----AAATG-TATA-GCTATTTTTAC----------
-------CATTGGCGTTCTTAAAAAATA



Horse133_LINE

>L1MAB_EC
--------------------------------------------------------------------------------
--------TTTTTTTTTTTCAGTTTTATTGAGATATAATTGACAT-ATAACATTGTATTATGTTTAAGGTGTACAACATA
ATGATTTGATATATGTATATATTGTGAAATGATTACCACAATGAAGTTAATTAACACATCCATCACCTCACATAGTTAC-
----------------AAATTTTTTTTTTGTTTKTGTGATGAGAACTTTTAAGATCTACTCTCTTAGCAACTTTCAAATA
TACAATACAGTATTATTAACTATAGTCACCATGCTGTACATTACATCCCCAGAACTTATTCATCTTATAACTGAAAGTTT
GTACCCTTTGACCAACCTCTCCCTATTTCCCCCACCCC-----CCAGCCTCTGGCAACCACCAATCTATTCTCTGTTTCT
ATGAGTTTGGTTTTTT-------TTTTTTAGATTCCACATATAAGTGAGATCATGCAGTATTTGTCTTTCTCTGTCTGAC
TTATTTCACTTAGCATAATGCCCTCAAGGTTCCATCCATGTTGTCACAAATGGCAGGATTTCCTTCTTTTCTTTTTTATG
GCTGAATAATATTCCAT------------------------------TGTATATATATACCACATTTTCTTTATCCATTC
ATCCA---TCAATGGACACTTAGGTTGTTTCC-ATRTCTTGGCTATTGTGAATAATGCTGCAATGAACATGGGAGTGC-A
GA---TATCTCTTCAAGATTAGTGATTTCATTTCCTTTAGGATATATACCCAGAAGTGGGATTGCTGGATCATATGGTAG
TTCTATTTTTAATTTTTTGAGGAACCTCCATACTGTTTTCCATAGTGGCTGCACCAATTTACATTCCCACCAACAGTGCA
CAAGGGTTCCCTTTTCTCCACATCCTCGCCAACACTTGTTATCTCTTGTCTTTTTGATAATAGCCATTCTAACAGGTGTG
AGGTGATATCTCATTGTGGTTTTGATTTGCATTTCCCTGATGATTAGTGATGTTGAGCACCTTTTCATGTACCTGTTGGC
CATTTGTAT-GTCTTCTTTGGAAAAATGTCTATTCAGATCCTCTGCCCATTTTTTAATTGGATTATTTGGTTTTTTTGCT
ATTGAGTTGTATGAGTTCCTTATATAT-----------------------------------TTTGGATATTAACCCCTT
ATCAGATATATGGTTTGCAAATATTTTCTCCCATTCCATAGGTTGCCTTTTCATTTTGTTGATGG-------------TT
TCCTTTGCTGTGCAGAAGCTTTTTAGTTTGATGTAGTCCCACTTGTTTATTTTTGCTTTTGTTGCCTTTGCTTTTGGTGT
CAAATCCAAAAAATCATTGCCAAGACCAATGTCAAGGAGCTT-AYCCCCTATGTTTTCTTCTAGGAGTTTTATGGTTTCA
GGTCTTACATTCAAGTCTTTAATCCATTTTGAGTTGATTTT---------------------------------------
-----------------------------------
>Equus_caballus
TAATCTATAAGAAG----------------TCATAGTATAATAATGTGTTAAACATTATTTTTGTC---TGACAGGATTT
TTA--------------------------------------ACAT-ACATTACTGTA-TAAGTTTAAGGTGTACAGCATG
ATGGTTTGATTTA--CACTTATTGTGAAATGATTACCACTAATTGTTTAGTTA--ATATCTATCTTCTCATATAGATACA
GTAAAAAGAAAAGAAAAAATATTTCCCCT-----TGAGATGAGAACACTTAGGATCTACTCTCTTAACAACTTTCTTATA
TATCGTACAGCAGCGTTGACTATAGACATCATGTTATACATTACATCCCTAGTACTTATTTATTTTGTAACTGGAAGTTT
TTACCTTTTGACCACCTTCCTCCAATCCCCCCTCCCTTTACCTTCTGCCTCAGGTAACCACAAAACTGGTCTCTTTTTCT
ACTAGTCTGGTGTTTTGTTTTGTTTTTTCAGATTCCCCATATAAGTGAGATCAAACAGTATTTGTC-TTCTCTATCTGAC
TTATTTCAGTTAGCATAATGCCTTCAA-GCTCCACCCATGTTGTCACAAGTGGTAGGATTTCCTTGTTT--TTTTTTATG
GCTGAATAATATTCCATTTTGTGTGTGTGTGTGTGTGTGTGCGTATGTGTGTGTGTACACCACAATTTCTTTATCCATTC
ACCCACTGCTGCTGGACACTTAAGTGGTTTCCAACATCTTGGCTATTGTAAATAATGCTGCTATGAACATGAGGGTCC-A
GA---TATATTTTTGA-ATTAGTT-TTTCATTTCCTTT-GGATATATTTCCAGAAGTGGAATTGCTAGATCATAGAGTAG
TTCTATTCGTAATTTTTTGAGGACCCTCCATACTGTTTTCCATAGTGGCTGCACCAATTTACAATCCTACCAATGGTGCA
CAAATGTTCCCTTTTCTCCACTTCCACACCAGCCTTTGT--TCTCTTGTCTTTCTGATGATGGCCATTCTAACAGGCACG
AGGTGATATCTCACTGTGGTTTCAATTTGCGTTTCTCTTATGACTAGTGATGCTGAGCATCTTTTCATGTACCTGTTGGC
CATTCATATCTTTTTTTTTGGAAAAATGTCTATTCAGGTTCCTTGTCCATTTTTAGATTGCATCATTTGGGTTTTTTGCT
ATTGAGTTATATTAGTTCTTTATAAAT-----------------------------------TTTAGACATTAACCTCTT
ATCAGATATATGGTTTGCAAATATTTTTCCCCATTTCATAGGTTGTCTTTTTATTTTATTGA----------------TT
TCTTTTGCTGTGCAGAAGCTTCTTAGTTTGATATAGTCCCATTTGTTTATTTTTTATTTTGCGGCTTATGTTTTACATGT
GATTTCCAAAAAATCATTACCAAGACCCATGCCAAGGTGTTTTTTTTCCTTTGTTTTCTTCTACTAGTTTCATAGTTTCA
GGTCTTACATTTAAGCCTTTATTTCAT-----------------TGACAGTAGCATTTTTA---TGACATAATTG-AATC
AAAGTCTTCCATTAAGCAACTGATTAAATCATTAG
>Tapirus_indicus
CAATCTACAAGAAG----------------CCATAGTATAATAATGTGTTAAATATAATTTTTGTC---TGACAGGATTT
TTG--------------------------------------ACATAACATCACTGTA-TAAGTTTAAGGTGTACAGCATG
ATGGTTTGATTTA--CACATATTACGAAATGATTACCACAATAAGTTTAGTTA--ATATCTATCATCTCATATAGATACA
GTAAAAAGAAAAGAAAAAAATTTCTCCTT------GCGATGAGAACACTTAGGATCTACTCTCTTAAAAACTTTATTATA
TACCATACAGCCGTATTGACT-TAGTCACCATGTTGTACATTATGTCTCTGGTACTTATTTATTTTATAACTGGAAATTT
TTACATTTTGACCACTTTCCTCCAATTCCCCCTCTCCA---------CTTCAGGAAACCACAAATCTGATCTCTTTTTCC
ATGAGTCTGGTTTTTGGGGTT--TTTTTCAGATTCCACATATAAGTGAGATCATACAGTATTTGTCTTTC----TCTGAC
TTATTTCACTTAGCATGATGCCTTCAA-GCTCCATCCATGTTGTCTCAAATGGTAGGATTGCCTTGA----TTTTTTATG
GCTGAATAATATTCCAT------------------------------TGTATATATATACCACGATTTCTTTATCCATTC
ATCCA---CTGATGGACAC--AGGTTGTTTCCAATGTCTTGGCTATTGTAAATAATGCTGCTATGAACATGGGGGTGC-A
GA---TATCTTTTTGA-GTTAGTT-TTTCATTTCCTTT-GGATATATTCCCAGCAGTGGAATTGCTGGATGATGTGGTAG
TTCTATTTTTGATTTTTTGAGGAAACTCCATAGTGTTTTCCATAGTGCCTATCCCAATATACAATCCCATCAACAGTGCA
CAAGTATTCCCTTTTCTCCACATCCACACCAACATTTGT--CCCCTTGTCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNN-----------------NNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>Myotis_myotis
NNNNNNNNNNNNNN----------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNN
NNN--------------------------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCATGAGTGAGTGAGATCATGTGGTGTTTTTCCTTCATTGACTGGC
TTATTTCACTTAGCATAATGCTCTCCA-GTTCCATCCATGCCGTTGCAAATGGTAAGAGTTCCTTA-----TTTTTTACA
GCAGCATAGTATTCCAT------------------------------CGTGTAGATGTACCACAGTTTTCTAATCCATTC
ATCTA---CTGATGGGCACTTAGGCTGTTTCC-AGATCTTAGCTATGGTGAATTGTGCTGCTATGAACATATGGGTGC-A
TA---TATCCTTTATG-ATTAGTGTTTCTGGTTTCTTG-GGATATATTCCTAGAAGTGGGATCACAGGGTCAAATGGGAG
TTCCATTTTTAGTTTTTTGAGGAAACTCCATACTGTCTTCCATAGTGGCTGCACCAGTCTGCATTCCCACCAGCAGTGCA
CGAGTGTTCCTTTTTCTCCACATCCTCTCCAGCACTTGTCGTTTGTGGATTTGTTGATGATAGCCATTCTGACAGGTGTG
AGATGGTACCTCATTGTTGTTTTGATTTGCATTTCTCAGATGATTAGTGACTTTGAGCAAGTTTTCATATGTCTCTTGGC
TTTCTGAAT-GTCCTCTTTTGAAAGGTGTCTATTTAGGTCTTTTGCCCATTTTT-GATTGGATTGTTTATCTTCCTT-TT
GTTAAGTTGTATGAGTTCCCTATAAATTTTGGAGATTAAGCCCTGTATGAGTTCTTTATATATTTGGATATTAATCCATA
ATAAGATATATGTTTTGCAAATG-TTTCTTCCATTCTATTGATTGTCTTTTCATCCTGTTGATTTTTCTTTTCCTTTCTT
TTTTTTGCTGTGCAGAAGCTTTTTAGTTTGATTCAGTCCCACTTGTTAATTTTTTATTTTGTTGCTT---------GTAT
GGTTTCCAAAAATTCATTACCAAAACCCATGTCAAGGAGTTT--------TTGTTTCC--CTAGGAGTTTCATCCTTTCA
GGTCTCACCTTTAAATCTTCAATCCAC-----------------TGACAGTAGAATTTTTA---TGACATAGTTG-AATC
TAAGTATTTCATTAAGCAACTAATTAAATCATTAA
>Rousettus_aegyptiacus
NNNNNNNNNNNNNN----------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNN
NNN--------------------------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCTTGGTTATTGTAAATAATG-TCCTATGAACATGGAGGTACTT
GAAAATATCTTTTCAA-GTTAGTGTTTTTCTTTTCTT--GGATATATTCTCAGAAGTAAAATTTTTA-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TAATTATTTTTTTCATTTCACAAGTGGTCTTTTCAATTTGTTGATGG-------------TT
TATTTTGCTATGCAGAAGCTTTATACATTGATGTAGTCCTACTTGGTTATTTTT-ATTT-GTTGTTTGTGCTTTAGGTCT
TATTTCCAAAA--TCATTATCAAGACCTATGTCAAGAAACTTTT-CTTCTATGTTTTCTTCTAAGAGTTTTATCATTTTG
GGTCTTACATTTATGTCTTTAATCCAT-----------------TGACAGTAGAATTTTTA---TAACACCATTG-AATC
TAAG----TCCGTAAATAATTAATTAAATCATTTG
>Canis_familiaris
CAACCCATAAGAA------------------CATAGGAGAATAATGTGTTAAATATTATTTTTGTC--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TGG---TAGAATTTTTG---CAACATGGTTGGAACT
TAAGTATTTCATTAAGCATCTGATT-AATCATTAA
>Felis_catus
CAACCCATAAGAAG----------------CCATAGGAGAATAATGTGTTAAAAATTACTTTTGCC--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TGA---TAGAATTTTTA---TGACATAATTGAAATA
TAATTATTTCATTAAGCATTTGATTAAATCATTAG
>Manis_pentadactyla
TAACCCATAAAAAA----------------CCATGGGAGAATAATGTGTTAAATATTATTTTTGTC--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TG-CA---GGATTTTTA---TGACATAATTCAATCG
AAATTATTTCATTAAATAACTGATTAAATCATTAG
>Sus_scrofa
TAATCTGTAAGAAA----------------CCATAGGAGAATAATGTGCTAAATATTATTTTTGCC--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------AGACA---GAATTTTTA---TGACATTACTG-AATT
TAAGTATTTCATTAAGCACCTGATTAAATCATTAG
>Bos_taurus
TAATCTATAAGAAG-----------------CCTTGGAGAATAATGTGCTAAACCTTATTTTTGTC--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------AGA-----AAATTTTTA---TGACATAAT-------
--TGAATTTCATTAAGTGCTTGATTAAATCATTAG
>Condylura_cristata
TTATCTACTGTACA-----------------CATAGAAGAAT-ATGTGT------TCATTTTTTTC--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TGACA----GATTTTTC---TGACACAAT-----TT
AATGTATTTCATTAAGCACCTTATTAAACCATCAA
>Solenodon_paradoxus
CAGTTTATAAGAAG----------------CCATATGAAAGTAATGTGTTAAATATGTTTTTTGTC--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TGACAAAAGGATTTTTA---TGACATAATTG-----
--AATATTTTATTAAGCAGCTAACTAAANNNNNNN
>Homo_sapiens
TAACCTATTAGGAGAACAAAGAATTCTCTTAATAAGGAGAATAATGTTTTAAATAT--TTTTTGTG--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TGACACTAGGATTTTTA---TTACA--ATTT-AATA
TAAATACTTCATTATGTACATCATTAAATTATGAG



Horse135_LINE

>L1MAB_EC
--------------------------------------------------------------------------------
----CAATATATACATATATCAAATCATTATGTTGTA-----CACCTTAAACATAATACAATGTTATATGTCAATTATAT
CTCAATAAAACTGAAAAAAAAAAA--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---
>Equus_caballus
TTT-CCATAGCTGTTGCTCAG-TAGTGAGCATGTTTTACTT--------AGAGACTAAC-TTT---AAGATGGTAAGTGT
T------------CAAATATCAAATCATTATGTTGTA-----TACCTGAAAC-TAATATAATGTTGTATGTCAGTTATA-
CTCAGTTAAAAA---------------AA-ATGGCAAGTGTT---GA---AACTGTAACA-TTTTCAACATTAAGTTAAA
TATCTTTCTGTT--------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------ATATA
CCT
>Ceratotherium_simum
TTT-CCATAGCTGTTGCTCAG-TAGTGAGCATGTTTTACTT--------AGAGACTAAC-TGT---AAGATGGCAGGTGT
T------------CAAATATCAAATCATTATGTTGTA-----CACCTGAAAC-TAA----------TATGTCAATTATAC
CTTAATTAAAAA---------------AA-ATGGCAGGTGTT---GA---AACTATAACAGTTTCAAACATTAAGTTAAA
TATTTTTCTATT--------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------ATGATATA
CCT
>Myotis_myotis
TTT-CCACAGCTGTTGCTCAG-TGGTGAACATGTTTTACTC--------AGAGAATAAC-TTT---TAGATGATATGTGT
T------------CTAATATTGAATCATTACGTTGTAATGATTATCTGAAAC-TAATATAATGTTGTATGCCAATTATAC
CTCAATTAAAAA---------------AATATGGG-AGTGTT---AA---AGCTATAACAATTTTGACC--TAATCTAAG
T-TCTGTCTTTT--------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------ATGTA
AAA
>Rhinolophus_ferrumequinum
TTT-CCATAGCTATTGCTCAG-TGGTGAGCATGTTTTACTC--------AGAGACTAAC-TTT---TAGATGGCAAGTCT
T------------GTAATATCGAATCATTATGTTGTA-----CATCTGAAAC-AAATATAATGTTGCATGTCAGTTACAC
CTCAATTTAAAAAAA------------AGGATGGCAACTGTT----A---AGCAATAACAATTTNNNNNNNNNNNNNNNN
NNNNNNNNNNNN--------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------NNNNNNNN
NNN
>Canis_familiaris
TTTCCCATAGCTGTTGCTCAG-TGGTAAGCATGTTTTACTC--------AGAAACTAAC-TTT-----------------
--------------------------------------------------------------------------------
---------------------------AATGTGGCAAGTGTT---GC---AGCTGTAACAATTTTAAATGTTAGGTTAAA
TATCTTTCTGTTGGGATCCCTGGGTGGCGCAGCGGTTTGGCGCCTGCCTTTGGCCCAGGGCGCGATCCTGGAGACCCGGG
ATCGAATCCCACATCGGGCTCTCGGTGCATGGAGCCTGCTTCTCCCTCTGCCTGTGTCTCTGCCTCTCTCTCTCTCTCTC
TGTGTGACTATCATAAATAAATAAAAATTAAAAAAAAAATTAAAAAAAAAATAAATATCTTTCTGTTATGGTAT-ATATA
CCT
>Felis_catus
TTTCCCACAGCTGTTGCTCAG-AGGTAAGTGTGTTTTACTC--------AGAGACTAAC-TTT-----------------
--------------------------------------------------------------------------------
---------------------------AACATGGCAAGTGTT---GATGAAGCTGTAACAATTTTAAATGTTAGGTTAAA
TATTTTTCTGTC--------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------ATGATATA
CCT
>Manis_pentadactyla
TTT-CCATAGCTATTGCTTAGTTGGTGAACATGTTTTACTT--------AGAGGCTAACTTTT-----------------
--------------------------------------------------------------------------------
---------------------------AAGATGTCAAGTGGT---GA---AGCTGTAACAATTTTAAAATTTAGATTAAA
TGTCTTTCTGTT--------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------ATGGTATA
CCT
>Sus_scrofa
TTT-CCACAGCTGTTGCTCAT-TGTCGAGCATGTTTTACTC--------AGAGGCTGCC-TTT-----------------
--------------------------------------------------------------------------------
---------------------------AAGATGGCAGGTGTT---GA---CGCTGTAACAATTTCAAACATTAAGTTAAA
TACTTTTCTATT--------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------TTGGTGTA
CCT
>Bos_taurus
TTT-CCATAGGTGTTGCTGTATTGAGCAACACCTTTAACCTGGTGTTAAAGAGACTGCC-TTT-----------------
--------------------------------------------------------------------------------
---------------------------AACCTGGCAAATGTT---GA---AGCTGTAACAATTTCAAACATTAGGTTAAA
TATTTTTCTATT--------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------ATGGCATA
GCT
>Scalopus_aquaticus
TTT-CCATAGCTATTGCACAG-TGGCGAACATGTTTTACTC--------AG------TC-TTT-----------------
--------------------------------------------------------------------------------
---------------------------AGGATGGCAAGTAGA---TA---AGTTGTAACAATTTTAAACATTAGATTAAA
CATTTTTCTATT--------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------ATAG---G
CCT
>Sorex_araneus
TTT-ATATAGCTGTTGCTAAG-TGGAAAGTGTGTTTTGCTT--------AGAGTCTTAAATTT-----------------
--------------------------------------------------------------------------------
---------------------------AAAATGACTAGTATT---GA---ACCTGTGATGATTTCAAACATTTGGTTAAA
TGTTTTTCTATT--------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------CTGATGTC
CCT
>Homo_sapiens
TTT-CCATAGCTGTTATTCAG-TTGTAAGCATGTTTTACTG--------GGAGAGTAAC-TTT-----------------
--------------------------------------------------------------------------------
---------------------------CAGATGGCAAGTGTT---GA---AACTGTAACA------AACATTAGTTTAAA
TATTTTTCTATT--------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------ATGGCATA
CCT



Horse136_LINE

>L1MAB_EC
--------------------------------------------------------------------------AACAAA
AAAAAAATTTGTAACTATGTGAGGTGATGGATGTGTTAATTAACTTCATTGTGGTAATCATTTCACAATATATACATATA
TCAAATCATTATGTTGTACACCTTAAACATAATACAATGTTATATGTCAATTATATCTCAATAAAACTGAAAAAAAAAAA
-----------------------------------------------------------------------
>Equus_caballus
CTAAATTATTTTG-AATAAATAAGAATCTCATTTC-TCTTTGTCAGGGAA-TT---AAGAAAATAAATATA---------
-----TTATTGTATCTATATGAGAAGGTGGA--TGTTAGCTGAACCTACTGTGATAATCATTTCACAATATAT--GTAAA
TCAAACCATCATGTTGTATGCCTTAAAC-TTATACAGTGATGTATGCCAGTTATTTCTCAATAAAACTGG----------
---AAAAAAAGAAATATA---AAATATGATGCAGTAAGAAATTATGAAGGTATATGAGGTAAGATTTGGAA
>Ceratotherium_simum
CCAAATTATTTTG-AAGAAATGAAAATCTTATTTC-TCTTTGTCAGGGAA-TT---AAAAAAATAAATATA---------
-----CTATTGTATCTATATGAGAAGATGCA--TGTTAGCTGAACCTATTGTGGTAATCATTTCACAATATAT--GTAAA
TCAAACCATCATGCTGCACGCCTTAACC-TTATATAATGATGTATGTCAATTATTTCTCAATAAAACTG-----------
---GAAAG--AAAATATA---AAATATGATGCAGTAAGAAATTATGAAGGTATGCGAGGTAAGATTTGAAA
>Myotis_myotis
CTAAGTTATTTTT-TAAAAATAAGAATCTAATTTC-TCTTTGTCAGAGAA-TT---GAAAAAA-GAATATA---------
-----TTATTGTATCTATTTGAGAAGGTGGA--TGTTATTTAAAACTATTGTGGCAATCATTTCACAAGATA--------
--------------TGTACCTCTTAAAC-TTATACAGTGATATATGTCAATTACTTCTCAATAAAACTG-----------
---AAAAAGGTAAATACA---AAGCATGATGCAATAA-AAATTATGAAAGTATGTGAGATAATATTTAAAA
>Miniopterus_natalensis
CTAAGTTATTTTGAAAAAAATAAGAATCTTATTTC-TCTTTGTCAGGGAA-TT---AAAAAGG-AAATATA---------
-----TTATTGTATCTATATGAGATGGTGGA--TGTTAGCTAAACCTATTGTGGTAATCATTTCACAATATAT--GTAAA
TCAAACCATCAGGCTGTACACCTTAAAT-TTATACAGTGATATATGTCAATTGCTTCTCAATAAAACTGG----------
---AAAAAAATAAA-------AAACATGATGCAGTAAAAAATTATGACAATATGTGAGGTAAGATTTGAAA
>Canis_familiaris
CTAAGTTATTTTG-AAGAAATGAGAATTTTGTTTCTTTTTTGTCAG-GAA-TT---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---AAGAAAAAAAATACA---AAACACAATAGAGCAAAAGCTTATAAAGTTATGTGAGGTTAAATTTAAAA
>Felis_catus
CTAAGTTATTTTG-AAAAAATGAGAATTTTGTTTC-TCTTTGTCAGGGAA-TT---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---AAAAAAAGAAAGGTA---GATTATGATGCAGCAACAACTTGTAAAGGTATGTGAAGTAAGATTTGAAA
>Manis_javanica
CTAAGTTATTTTG-AAGAA-TG-GAATCTTGTTTA-TCTTTGTCAGGGAA-TT---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---AAGAAAAGAAATATA---AAACATGAT-TAGTAAAAAATTATGAAGGTATGTGAAGTAAGATTTGAGA
>Sus_scrofa
CT--GTTATTTTA-AGGAAATGAAAATCTTGTTTC-TCTTTGTCAGGGAATTT---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---AAAAA--AATATATA---ATACATAATGTGGTAAAAAACTATGAAGGTCTGTGAGGTAGAACTTGAAA
>Tursiops_truncatus
CTAAGTTATTTTG-AAGAAATGAGAATCTTGTTTC-TCTTTGTCAGGGAA-TT---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---AAAAAAAGAAATAAA---AAGCATAATGTAGTAAATAATTATGAAGATATGAGAGGTAAAATTTGAAA
>Condylura_cristata
CTCCGTTGTTTTG-AAGAAATGAGAATCTTACTTC-TCT----CAGGGAA-TT---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---AAA-CAATAAATATA---AAACATGACTCAGCAAAAAATCGTGCCGCTAAGCACGGTAAGATTTGAAA
>Solenodon_paradoxus
CCAAGTTATTTTG-AATAAATTAAAATCTTGTTCT-TTTTTGTCAGGGAA-TT---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---AAAATAAGAAATATA---AAACATGGTTTAGCAAAAAATTATGAAGGCATGTGCAGTAACATTTGAAA
>Homo_sapiens
CTAAGTTATTTTG-AAGAAATGAGAATCTTGTTTC-TCTTTATCAGAGAATTT---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---AAAAGGAGAGATATA---AAACACGATGCAGTCAAAAATTGTGAAAGCATATGAGGTAAAATTTGAAA



Horse142_LINE

>L1MAB_EC
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------TTTTTTTTTTTCA------
-GTTTTATTGAGATATAATTGACATATAACATTGTATTATGTT-----------TAAGGTGTACAAC-----ATAATGAT
TTGATA-TATGTAT---ATATT-----------------------GTGAAATGATTACCACAATGAAGTTAATTAACACA
TCCATCACCTCACAT--------AGTTACAA-ATTTTTTTTTTGTTTKTGTGATGAGAACTTTTAAGATCTACTCTCTTA
GCAACTTTCAAA--------------------------------------------------------------------
-----
>Canis_familiaris
CAAGAATTTACAGATATTATGCAAATA---TCTCCTGCTC-TGTTGTTTATC---TTTTATTA-TTCTTTTT---CATTT
ATTTTTATTTTTTGAAGATTTTATTTGAGAGAGAGAGAGGCAGAGAGCATGAGTGAGGAGAAGAGGGAGAAGCAGGCTCC
CTGCAGAGTAGGGAGCCCAATGAGGGGCTTGATCCCACCCTAGATCATGAACTGAGCTGAAGGGAGACACCCAACACACT
GAGCCACCCAGGCGCCCCTTATTCTTTTTTTTAAATTCAAAACTGAACTAGCAGAATTATATGTTGTATATATA------
----TTATTAAGATATAATTGACATA-AATATTGAGTTA-----------------AAATGTGCCAC-----CTAATGCT
TCAATA-TTTGTAT---ATGTT-----------------------GTGAAATGATCACCACAATAAGTCTAGTTA--ACC
TCCATCATCATCC----------AGTTACAA-TATTTTTTTCT-----TGTGATGAGAA-TTTCAGGATCTACTTT-TTA
G--------------TCTTA----TTTTTTT---GGTACTGTTTTACTAACAAAA-TTTCACCTCATTTAAAGACACCAA
CTAAT
>Felis_catus
CAAGAATTTAAAAATATTATGTAAATA---TCTCCTGATC-TATTATGTATC---ATTTATTATTCCTTTTT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------AAATACAAAATTGAGCTAGCTGAGTTATATGTTACATATA--------
----TTATTGAGATATAATTGACATATAACATTG--TTA--------------------------------------GTT
TCAATA-TTTGTAA---ATGTG----------------------------------------------------------
-------------------------------------TTTCC------TGGGATGAGAACTTTCAGGATCTACTTT----
G--------------TCTTATTGTTTTCTTT---GGTGCCTTTTTCCTACCAAAA-TTTCACTGCTTTTAAATACACCAA
CTCTT
>Manis_javanica
CAAGATGGTACAAATATTATGCAATT-TTATCTTTTACTC-TATTATTTATC---TTTTATCA----TTTTT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------ATGCAGAATTGAAGAAGC-TAATCATATGTTTTATATATA------
-TATTTATTGAAATATAGTTTGCATA-AACATTATATTATTTT-------------GGGTGTATAAC-----ATAATGAT
TCAATA-TTTGTAG---GTATT-----------------------GTGGGATCATCACCGCAATATGTTTAGTTA--ATA
TCCATCATCATGCATAGTTACATAATTACAATTGCTTTTTTCT-----TGTGATGAGAACTTTTAACATCTACTGTCTCA
G--------------TC--------CTTTCT---GGTACTGTTGTCCTACCGAAA-TTTCACTTCTTGTAAAGACAC---
CTAAT
>Sus_scrofa
CAAGATGGTGCAGATATTATGCAAATATTATCTCCTACTCTTAACATTTATC---TTTTATTA--TTTTTCT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------ACAGAATTGAAGTAGCTGGATTATA---TATGTATATA------
--TTTTACTGAGATATAGTTTATATATAATATTTTATTA-GTT-----------TCAGATGTATGAC--------ATGAT
TTGATATTTTGCAC---ATATT-----------------------GTGAAATGATCACCACAATAAGTCTAGTTA--ACA
TCCATTACTCTACAT--------AGTTACAA-TTTTTTTCCCT-----TGTGATGAGAACTTTTATAATCTAGTTTCTCA
G--------------TTCTGTCATTCTTTTT---GGTGTTGCTGT-CTACCAAAA-TTTTGCTGCTTTTGAAGACACTTA
AAGAT
>Bos_taurus
CAAGATGGTACAAATATTATGCAAATATTATCTCCTACTC------TTTATT---TTTTATCA-TTTTCCCC--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------ACAGAATT-AAGTAGCCAAATCACATGTTATATGTATGTA----
-TTTTTATTGGGATGTACTTTACATGTAATACTGTGTTATATTATACTGTATTCTCAGGAGTATAAC-------ATTGAT
TCAATA-TTTGTATTGAATATTTGGGAAAATTTGTATTGATCATGGGAAAATGATCATTACAATAAATCTAATTA--ACA
TCCATCACCACA-AT--------AATTATAA-TTTTTTCTT-------TGTGATGAGAACTTTCAAGATCTAGTCTCTCA
G--------------TTCTGTCATTCTTTTA---GG---------CCTATCAAAA-TTTCACTGCTTTTAAAGATACCTA
ATAGT
>Equus_caballus
CAACAAGGGGCAAATATTATGCAAATATTCTCTCCCACTC-TATAGTTTATC---TTTTATCA-TTCTTTTT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------ATAAACAGAATTGAAGCAGCTGAATCATAAGTTTTATATACATATGTA
TTTTTTATAGAGATACAGTGTTCATATAACATCACATTA-GTT-----------TCAGGTATACAAC-----ATAGTGAT
TCTGTA-TTTGTAT---ATATT-----------------------GTGAAACGATCACCACAATAAATCTAGCTA--ACA
TCCATCACCGTACGT--------AGTTACCA-TTTTTTTTCT------TTTGATGAGAACTTTTAAGATCTACTCTCTTA
G--------------TCCTATCTTTCCTTTT---GGTGCTATTCTCCTAGCAAAA-TTTCGCTGCTTTTAAAGACACTTA
ATAAT
>Tapirus_indicus
CAAGATGGTGCAAATATTATGCAAATATTATCTCCCACTC-TATTGTTTATC---TTTTATCA-TTTTTTGT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------ATAGAATTGAAGTAGCTGAATCATAAGTTTTATATACATATATA
-TTTTTATAGAGATATAATTTACATATAACATCATATTA-GTT-----------TCAGGTGTACAACTAGGTTTAGTAAT
TCCATA-TTTGTAT---ATATT-----------------------GTGAAACGATCACCACAATAAATCTAGTTA--ACA
TCCATCACCATACAT--------AGTTACAT-TTTTTTTTCT------TCTGATGGGAACTTTTAAGACCTACTCTCTTA
A--------------TCCTATCTTTCTTTTG---GGTGCTATTATCCTAGCAAAA-TTTCACTGCTTTTAAAGATACTTA
ATAAT
>Myotis_myotis
CAAGTTGGTGAAAATATTAGGCAAATA---TCTCCCCCTC-TATTGTTTCTC---TTTAATCC-TTCTTTTT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------GGTGCTGTTGTCTTACCAAA--TCCCACTGCTTTTAAAGACATTCC
ATAAT
>Rousettus_aegyptiacus
CAAGATGATGCAGATATTATGCAAGTATTTTCTCCCACTC-TATTGTTTGTC---TTTTAT---TATTTTTT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------GGTGCCATCATCCTACCAAAA-TTTCACTGGTTTTAAAGACATTTA
ATAAT
>Condylura_cristata
CCAGATAGTATAAATAATATACAGATGCAATTCCTTACTT-TACTGTTTATC---AATTATCA-CTCTTTTT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------GGTGCTGT---CCTGCCAAAC-TTTCACTA-TTTTAAAGAAATTTA
ATAAT
>Erinaceus_europaeus
CCA-----------GATAATGCAAATATTATCTCCCACTC-TGTTGCTTATG---CTTTATCAGTTTTTTTT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------GGTGTTGCTTTCCTAACAAAA-ATTCACTT------GAGACTTTTA
ATAAT
>Homo_sapiens
CAAAATGGTACAACTATTATGCAAATATTATCATCCCCTC-TGTTATTTGCC---TTTTATCA-TTCTTTTT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------GGTGCTATTGTCCTACCAAAATGTTCTTAC-TTTTAAAGACATTTG
ATAAT



Horse144_LINE

>L1MAB_EC
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-TTTTTTTTTTTCAGTTTTATTGAGATATAATTGACATATAACATTGTATTATGTTTAAGGTGTACAACATAATGATTTG
ATATATGTATATATTGTGAAATGATTACCACAATGAAGTTAATTAACACATCCAT-------------------------
----------------------------------------------------------------
>Canis_familiaris
GTTATACACCATGTCTTGTTTCTTGAATCC-TTCTCCAATTT-TTACTGTATTT-AAGAA--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------AC---TACATATTAT-TTTAT--
------------AATTTTAATTGAGGTATAATTGACATA-----------TTAGTTTCAGGTGTACAACATAATGATTCA
ATATCTGT----GGTACGAAATGATCAC------AAGTCCAGTTCACA-----------------TTTTTT---TTAATG
GATAAAAACATGGCATACCTGTACTTTCCTATT--TCCTCCCT-TCAGCCCCCATTA---CTCC
>Felis_catus
GCTACACATCAACTTTTGTTTCTTGACTCC-TTCCCCAATTT-TTACTCTATTT-AAGAA--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------AT---GACA-----T-GTGAT--
------TTTATTATTTTTAATTGAGGTATAATTGACATATAATATA----TTGGTTTCAGGTGTAAAACATA----TTCG
ATATTTGTACATAGTACAAAATGATCACAACAATA---CTAGTGACCA----------------TTTCCTT---TCATTG
CATAAAAACACAGCCTGTCTTTACTTTCCTATT--TCCTCCCT-TCAGTCCCCTTTC---CTGC
>Manis_pentadactyla
GTTACCCACTGACTTCAGTTTCTTGAAATTCTTTCCCAATTT-TAACTGTATTT-AAGAA--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------AC---TACA-----C-ATTTT--
-------------TTTAAAATTGAGATATAAT-------------------TAGTTTCAGATGTACAACATAATGGTTCG
ATATATGTTCATACTGCTAA-TCATCCCCACAATAAATCTAGTTAACA----------TACATTGTGTTTT---TCATGG
CATAAAAATGTGGCATATTTTTACTTTCCTACC--TCCTCCCTATCAACCCCCTTTC---CTCC
>Equus_caballus
GTTACACACTAACTTTTGTTTCTTGAATCC-TTCCCCAATTT-TCACCTTATTT-AAGAA--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------GC---TACATATTTT-ATTTT--
--------ATTATTTTTTAATTGAGATATAATTGAAATATAACATTATA-TTAGTCTCAGGTATACAACATAATGATTCC
ATATATGTACAAATTGAAAAGTGACCACCACAATAAGTCTAGCTAACA----------TTCGTTTTACTTT---CCGTTA
CATAAAACCATGGCATATTTTCGCTTTCCTAGCTTTCCTACC------TCCTCCTCC---CTTC
>Ceratotherium_simum
GTTACACAT---CTTTTGTTTCCTAAAGCC-TTCCCCAATTT-TCACTCTATTT-AAGAA--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------AC---TACA-----T-ATTTT--
----ATTTATGATTTTTTAATTGAGAGATAATTGACATATAACATTATA-TTAGTTTCAGGTGTACAATATAATGATTCA
ATATACATACATATTGAAAAATGATCACCACAATGAGTCTAGTTAACA----------TTCACTGTATTTT---TCATTT
CCTAAAAACATGGCATATTTTTGCTTTCCTACC--TCCT---------CCTCCCTTC---CTCC
>Sus_scrofa
GTTACACTTCAACTCTCGTTTCTTGAATTC-TCTCCCAACG--ACACACTGTTTTCCACATTTTGGTTTTTTTTTCTTTT
AGAGATATAATTGTTATAAAATTCACCCATTTAAAACAAACAATTTTCTGTAAACTAGAGTTGTGCAACCATCACCACAG
TCTAATTTTAGAACATCTTCATCAGCCCAGAAAGAGGCCCTTTCTTTCTATGTGTGTCCGTTTGTAGTCACTTCCCACTT
CCACCGACCAGGCTTAGGCAACCGTTAATCTACTCTCGGTCTCCATGGATTTGCTTTTTCTGGACAATTCATACAAATGG
AATCACACAACATGTGGGCTCCGGGGTTTGGCTTCTTACAGTTAAGATAATGTTTTGAGGTTCATCTATATCGTTAAGTT
ACATCAACACTACATCGTTTTTATCGCTGAATAGTAAGTAGTTCATTGACCGGATAGAA---CACAAATTTT-GGTTT--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TTATTG
CATAACAACATGGCATACTCTTGCTTTCCTACC--TCCTTTTTAT---GCCCCCTTT---CTTC
>Bos_taurus
GTTACACATCAACTTTTGTTTCTTGGCTCC-TTCTCCAACTT-TTACTCTTTTT-AAGAA--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------AC---GACACATTTT-ACTTT--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------CAATTA
CATAAAAAAATGGCATATTCCTGCTTTCTTACC--TTCTTTATAT---ACTCCTTTC---CTTC
>Myotis_myotis
GTT-CACATAAACTTTTGTTTCTTAAATCC-TTGTCCAATGT-TCACTCTATTTGAAAAA--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------AC---TACACCTTTT-ATTTT--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TCATGG
CA-GAAAACTTGGCACATTTTTGCTTTCCAACC--TCCTTCT------TCTCCCTTC---CTTC
>Miniopterus_natalensis
GTTA-------------GTTTCTTGAATCCCTTTTTCAACTT-TGTCTCTCTTT-AGAAA--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------CC----ACACATTTT-ATTTC--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TCATTG
CTTAATAACCTGGCATAGTTTTGCTTTCCTACC--TCTTTCC------TCTCCTTTC---CCCC
>Condylura_cristata
GTTACATACTG-CTTTTGTTTCTTAAATCC-TATCATAAGAT-TCACTCTACTG-AAGAA--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------AC---TCCACC-----TTTTT--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------GCATTG
CATAAA-----GGCATGGTTTTGCTTTCCTACC--TCT----------CCCTCATCC---CTCC
>Erinaceus_europaeus
ATTACATATCA-CTTTCAATTCTGGAAACT-TTTCCTCAACTCTCACTTTACTG-AATAA--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------AT---TATGCATCATCTCTTT--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TC--TG
CATACCTACGTGCCACA-TTTTGCT------CC--CCCC---------CCCACATTC---CTCA
>Homo_sapiens
GTTACACATCAACTGATGTTTCTCGAATCC-TTCCCCAAATT-TCCCTCTATTT-GGGAA--------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------AC---TATACA--TT-ATGTT--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------TCATTG
CCTAGAAACATGACATAGTCTTGCTTTCCAACC--TCCTT--------TCCCCTTCCACTTTCC



Horse145_LINE

>L1MAB_EC
--------------------------------------------------------------------------------
---------------------TTTTTTTTTTTCAG-------TTTTATTGAGATATAATTGACATATAACATTGTATTAT
GTTTA---------------------------------------------------------------------------
-------------------
>Canis_familiaris
GCCCGTAAG-------AAACCCCCAG---GAATTTGAACAGAGAGAATTTAATT---CTTAACATTTAAGAATGTTT---
-TG-TGATTTAATGGAAATCTTTATTTTCTCCCAATAATAACTTTTATTGAGTCATAATTGACATACAACACTGTAT---
--------T---GAAGTGTT---CGCT--GAAGTTGAG----AAGGT---AAAGAGGACTCTAAGGTACCA---------
-----------CAGCAGCC
>Felis_catus
CCCAGTCAGGAGACATAAAGCCCCAG---GTATTTGAACAGAGAGAATTGAAGA---GG--------AAGAATTTTT---
-TA-TGATTTGATAGAAACCTTTATTTTTTCCCAATAATAATTTTTATCGGGCTGCAATTGGCACATGACCTTGTAT---
--------TCAAGAAGTGTT---AACT--GAAATTGAG----AAAGT---GAGGGCTACTCTAAGTTATCA---CAGGTG
GCAGCTACAGAAAGCAGCC
>Manis_pentadactyla
TCCCATGAGGAGACAGAAACCACCAG---GTATTTGAACTGAGAAAATTTAATA---TG--------AAGATTGTTT---
TTAATGGTTTAATGAGAATCTTCATTTCCCTCCAG-------TTTTATTGATATATGATGCACATATAACACTAT-----
--------TGAAGAATTGTT---AACT--GGAATTGAG----AAGGT---AAAGAGAACTTTAAGTTCTCACCAAAGATA
GCAACTGCAGGAAGCAGCC
>Sus_scrofa
TTCTGTGAGGAGGCAGAAACCACCCA---GTATTTGAAC--AGAGAATTTAATA---TG--------AAGGATATTT---
-TAATGATTTCATGGGAATCTTTATTTTTCTC-AG-------TTTTATTGAGATATAATTGACATATAATGTTACAG---
--------TGAA-AATTGTA---AACTGTGACATTAAG----AAGGC---AACGAGANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNN
>Bos_taurus
TCCTGTGAGGAGTCAGGAAGCACCAG---GTATTTGAACAGAGAGAATTTACTA---TG--------AAGAAAATTT---
TTAATGACTTAATGGGAATCTTCATTTTCCTCCAG-------TTTTACTGAGCTGTAACTTACATATAACATTGTAT---
--------GGAAGAATTGTT---CACCATAACATTAAG----AAGGT---AGTGAGG-------------------GGTA
GCAAGCGCAAGAAGCAGCT
>Equus_caballus
TCCCATGAGGAGACAGAAACCACCAG---GTATTTGAACAGAGAGAATTTAATA---TG--------AAGAACTTTT---
TTAATGATTTAATGGAAATCACTATTTTCC-CCAG-------TTTTATTGAGATGTAGTTCACATATAACGTTGTAT---
--------TAAAGAATTGTT---AACA--GAAATTGAG----AAGGT---AAAGAGAATTCTAAGATATCA-CAGAGGTA
GCAAGTGCAGGAAG-AGCC
>Ceratotherium_simum
TCCCGTGAGGAGACAGAAACCACCAG---GTCTTCAAATAGAGAGAATTTAATA---CG--------AAGAATTTTT---
TTAATGATTTAATGGTAATCACTCTTTTTTCCTAG-------TTTTATTGAGGTATAATTGACATATAGCATTGTAT---
--------TGAAGAATTGTT---AACT--GAAACTGAG----AAGGT---AAAGAGAACTGTAAGGTATCA-CAGA----
------GCAGGAAGCAGCC
>Myotis_myotis
TTCTCTGAAGAGACGGAAACCA-------GCGTTTAAACGGAGAGAATTTGATA---TG--------AAGAATTGTT---
--------------------------------------------------------------------------------
-----------------------AACTGTGAAACTGAG----ACGGT---AAAGAGAACTCTAAGGTATCA-CAGAGGTA
GCGACTGCAGGTAGCAACC
>Rousettus_aegyptiacus
TCTCACGAGGAGACAGAAAGCACCCG---GTGCTTGAACAGAAAGAATTTAAGA---TG--------AAGAATTGTT---
--------------------------------------------------------------------------------
-----------------------AACTGTGAAATTGAG----ACGGT---AAAGAGAACTCTAAGGTATCA-CAGAGGTA
CCAGCTGCCGGTAGCAGCC
>Condylura_cristata
TCCTGTGAGGCGACAGAAACCACC-------------------AGAATTTAAG----TG--------AAGAATTATT---
--------------------------------------------------------------------------------
-----------------------AGCCATCAATGTGAG-------GTTT-ATAGAAAACACTAAGTT-TCA-CAGAAGTA
GCAGCTGCAGGAAGCGATT
>Sorex_araneus
TCTCCTGAGGAGGCAGAAGCCACCAGGCAGCATCTGAGCCCAGAGAACTTAAGG---GG----------GCA--GTT---
--------------------------------------------------------------------------------
-----------------------AACTGTGGAACTGAGACACAAAGACACAAAGAAAACTCTCAG---------------
---GGTGTAGAAAGCTGCT
>Homo_sapiens
ACCTGGCAGGAGTCAGAAACTTCTAG---TTATTTGAGGAGAGACAATTTAATG---CA--------AAGAATTGTT---
--------------------------------------------------------------------------------
-----------------------AGCTGTGGAATTGAA----AAGATTTAAAAGAGTACTTGAAGTTAGAA-CAAAGGCA
GCAGCTGTAGGCAGCAGCC



Horse148_LINE

>L1MAB_EC
--------------------------------------------------------------------------------
-TTTTTTTTTTTCAGTTTTATTGAGATATAATTGACATATAACATTGTAT------------------------------
------TATGTTTAAGGTGTACAACATAATGATTTGATATATGTATA-------TATTGTGAAATGATTACCAC----AA
TGAAGTTAATTAACACATCCATCACCTCACATAGTTACAAATTTTTTTTTTGTTTKTGTGAT-GAGAACTTTTAAGATCT
ACTCTCTTAGCAACTTTCAAATATACAATACAGTATTATTAACTATAGTCACCATGCTGTACATTACA-TCCCCAGAACT
TAT-TCATCTTATAACTGAAAGTTTGTACCCTTTGACCAACCTCTCCCTATTTCCCCCACC---------------CCCC
AGCCTCTGGCAACCACCAATCTATTCTCTGTTTCTATGAGTTTGG----TTTTTTTTTTTTAGATTCC------------
-------------------------------------------------------------------
>Canis_familiaris
AGTTTTATTGGAGAAAATGCCATACCACTGAAGAAAATTCCCTAATAGCT---AGAACGAGAAAAGA------AATTA--
----TTTCCCCTCAG----ACTGAGAT--CATTGACACATAACACTGTA-------------------------------
------------TAAGGTGTACAACATAATGATTTGATCTAAGTATA-------TATTGTGAAATGATCACCAC----AG
-TAAGTTA------GCATCCTTCACCTAACTGAAT------------TTTTTCCCTTGTGAC-GAGAACTTTTAAGATCT
ACTCTCTCAGC----TTTAAATATATATCACGTTATTATCACCTACAGCCACCACGTTGTACATTACA-TTCACAGAACT
TTT-TCATCT-GTAACTGGAAATCTGTACTTTTGGATCCCTTTCACCAGAACCCCCCTACTCACTTCCATCCTAGACTCC
CACTTCTGGCAAACACACATCAGATCTCTCTTTCTACAAGTCTGGTAAATTTTTTTT--------------TATGAGAAG
AAAAA--CTA---TC-CAGAGGTAC-TATTAAGT---------------CAAAG-AAAATAGTTACA
>Felis_catus
AGTTTTATTCGAGAAAATGCCGTACCACTGAAGAAAATTCCCTAATAGCT---AGAAAGAGAGAAAAAAAA--AATTA--
----TTTTCCTCCAG----ATCGAAATATAACTGACACGTAACATTGCA-------------------------------
------------TAAGGTGTACAACATAATGATTTCACAGAAGTATACATACCGTATTGTAAAATGATTACCAC----AG
------TA------GTATCTTTCACCT-----AATTGTAA-----ATTTTTTCCCATGTGANNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------------NNNNNNNNN
NNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>Manis_javanica
AGTTTTATTCGAGAAAATGCCATACCACTGAAGAAAATTCCCTAATAGCT---AGAAAGAGAAAAA-------AATT---
-----TTTTTCCCAGTTTTATT--TATATAATTGACATATAACATTGTA-------------------------------
------TAAATTTAAGATACATGATATAATGATTTGATATAGGTATA-------TATTGTGAAATGATTGTCAC----AG
-TAAGTTA------ACATCGCTCACCTCACACAGTTACAA---TATTTTTTGCCCTTGTCAT-GAGAA------------
-----CTTATCAACTTTTAAATATACAATACAGTACTGTTAACTAGGGTCATCATGCTATACATGATA-TCCTCAGAACT
TATTTTATCTAACAACTGGAAGTTTGTAACTTTTGACTCCCTACACCTAATCCCTAATGCT------------------C
CACCTCTGACAACCACTAATCTGATC----TTTCTATACATTTTG---TTTTTTT----------------AGAAGGAAA
AAATA--TTA---CT-GAGAAGCAA--TTTAAGCACTTAAAT------ACCAGGTAAATTAGTTTCA
>Sus_scrofa
AGTTTTGTTTGAGAAAATGCCGTACCATTGAAGAAAATTCCCTAAGAGCT---AGAAAGAAGAAAAAG-----AATTA--
----GGTT-TCCCAGTTTTACTGAGATACAATTGACATTGAACATTGCATAAGTTTACGGTAGGACTTCCCTTGTGGCTC
AAAGTCTAAGTCTCAGGTGTACAACACAATGATTTAA-----GTAA--------CATTGTGAGATATCCCCATA----AG
ATGAGTTC------ACATCCCTCGCCT--CACAGTTACAGCTCTTCATTTC-----------------------------
-----CTTAGCAATTTTCAAACAGACAAGACACTACAGTTAATTATACTCACCATGTTGGGCATTACATTCCCCAGAAC-
----TCATTTTATAACTGGAAACTGGTGCCTTTCGCTCCCCTTGACCCAATCCCCCCACCTGACCCCCTCCCCAAACTCC
CATCTGTGGCAACCGCATATCTGACCTTTGTTACTAAAGGTG-------TTTTTT----------------GAAAAGAAA
AAAAA--------TT-GAGACATAA-TGTTAAGCAATTAAATTATGT-CTAAAGTAAATTAGTAACA
>Tursiops_truncatus
AGTTTTGTTTGAGAAAATGCCATACCATTGAAGAAAATTCCCTAAGAGCT---AGAAAGAAGAAGA--A----AATTA--
----TTTTCCCCCAGTTTTATTGAGATATAATTGACATGTAACATTGTG-------------------------------
------TAAGTTTAAGGCATACAACAAAATGATTTAA-----ATATA-------TATTGTGAAATAATCACCA-------
-GAAGTTA------ACATCCTTCCCCTCACGCAGTTACAAATCTTTTTT-----------------------------CT
ATTCTCTTAGCAACTTTCAAATATACAATACACTATTGTTAATTACAGTCACCATGTTGTACATTACA-TCCCCAGAACT
TATCTTATCTTACAACTGGAAGTCTGTACCTTCTGATCCCCCTTTATCCAATCTCCCCACAAC-------------TCCC
CACCTGTGGCAACCACAAATCTGATTTCTATTACTAAAAGTTTGG----TTTTTT----------------GAGAAGAAA
AAAAA----A---TT-GAGAGGCAA-TGTAAAGCAGTTAAGT------ACAAAGTAAATTACTTACA
>Equus_caballus
AGTTTTATTTGAGAAAATGCCATACCACTGAAGAAAATTCCCTAATAGCT---AGAAAGAAGAAAAAAC----AATTA--
----TTTT-TCTCAGTTTTATT--GATATAATTGACATATAACACTGTATAAGTTTA-------ATTATAACACTATACA
TATATATAACTTTAAAGTCTACAACATAATGATTTGATATAAGTATA-------TATTGTGAAATGGTTACCAA----AG
-TTAGTTA------ACATCCCTCACCT--TATAGTTACAA---TTTTTTTTCCACTTGTGAT-GAGAAATTGTAAGATC-
-------TAGCAACTTTTCAATATATAATACAGTACTGTTAACTCTAGTCACCATGCTGTACATTACA-ACCCCAGGACT
TAT-TTATCTTCTAACTGGAAGTTTGTATCTTTTGACCCCTCTCACTCAACCCCTCCACCCCCTAC----------TCCC
TGCTTGTGGCGACCATAAATCTGATCTCTGTTTCTGTAAGTTTAG----TTTTAT----------------AGAAGGAAA
AAAAAAATTA---TT-GAGAGGCAA-TGTTAAGCAATTAAATTAAGT-ACAAAGTGAATTAA--ACA
>Ceratotherium_simum
AGTTTTATTTGAGAAAATGCCATACCACTGAAGAAAATTCCCTAATAGCT---AGAAAGAAGAAAAAAA----AATTA--
----TTTT-TCCCAGTTTTATCGAGATATAATTTACAAATAACATTGTATAAGTTTA---------------ATTATAAC
ATTGTATAAGTTTAAAGTATACAACATAATGATTTGATATAAGTATA-------TATTGTGAAATGACTACCACAATAAG
TTTAGTTA------ACATCCCTCACACCTCATAGTTATAA----TTTTTTCCCCCTTATGATAAAGAAGTTTTAAGATCT
ATTCTCTTAGCAACTTTCAAATATACACTCCAGTATTGTTAACTGTAGTCACCGTACTGTACATTACA-TCCCCAGGACT
TAT-TTATCTTAGAACTGGAAGTTTGTACCTTTTGACCCCCCTCACCCAATCCCCCCAGCCCCTA-----------CTCC
CCACTCTGGCAACCATAAATCTGATCTCTGTTTCTATAAGTTTGG----TTTTTT----------------AGAAGGAAA
AAAAAA-TTA---TT-GACAGGCAA-TGTTAAGCAATTAAATTAAGT-ACAAAGTAAACTAGTTACA
>Myotis_myotis
AGTTTTATTGGAGAAAATGCCATACCATTGAAGAAAATTCCCTAAGAGCT---ATAGAGAGAGAGAGAAAAAAAAATA--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------GT-GAG-GGCAA-TGTCAAGCAATTAAATTAGGT-ACAAAATACATTAATTACT
>Rousettus_aegyptiacus
CGTTTTATTTGAGAAAATGCCGTACCATTGAAGAAAATTCCCTAATAGCT---AAAAAGGAGAAAAAGA----AATTA--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------CT-AAGAGGCAA-TGTTACACAA-TAAATTAGGT-ACAAAGTAAGTTAGTTACA
>Scalopus_aquaticus
AGTTTTATTGGAGAAAATGCCATACCATTGAAGAAAATTCCCTAGTAGCT---GGGGAAAAAAA---------AATTA--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------GT-GAGAAGAAA-TGTGAAACAATTAAATCAGGT-ACAAAATA----CATGACA
>Erinaceus_europaeus
AGTTTTATTTGAGAAAATGCCATACCACTGGAGAAAGTTCCCTAACAGCT---ACAAAGAAGCAA--------AATGA--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------TTAGGAAGGCAA-CATTAAACAACCAAATTAGGT-TCAAAATANNNNNNNNNNN
>Tupaia_chinensis
AGTTTTATTTGAGAAAATGCCATACCACTGTAGAAAATTCCCTAATAGCT---AGAAAGAGGAAAAGAAA----ATTA--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------TT-GAGAGGCGACTGTTAAGCAATTAAATTATGT-AGAAAGAAAAACAGTTACA



Horse149_LINE

>L1MAB_EC
--------------------------------------------------------------------------------
-----GGGATGTAATGTACAGCATGGTGACTATAGTTAATAATACTGTAT----TGTATATTTGAAAGTTGCTAAGAGAG
TAGATCTTAAAAGTTCTCATCACAMAAACAAAAAAAAAATTT--GTAACTATGTGAGGTGATGGATGTGTTAATTAACTT
CATTGTGGTAATCATTTCACAA---TATATACATATATCAAATCATTATGT---TGTACAC-----CTTAAACATAATAC
AATGTTATATGTCAATTATATCTCAATAAAACTGAAAAAAAAAAA-----------------------------------
---------------------------------------
>Canis_familiaris
TATGGTGACTGCATGGACTACAGGTAACCAAAATGCACTTGGTGAAGTTTAAA-------TC---AAAA---TACAAAAG
CA----------------TACTGTATTGACTGTAGTTAACAATACCATAT----TGCATATTTGAAAGTTGCCAGGAGGG
TAGATCTTAAAAGTTCTCATCACAAGAAAAAAAAACTTTTTTTGGTGGCTATATATGGTGATACA--TGTTAACTAGATT
AATTGTGCTGATTATTTTGCAAAACTCCATGTAAATATTAAGT-----------TGTACGC-----TGGAAAT-TAATGT
GATATTATAGGTCACTTGTACCTCAATTTAAAAC--------------AAAAGTGTACAGAAGCA---ACTGATCCAAGA
ATTTTTTTTATAA-GGTATGATTTTAGCTATTTAGCATT
>Felis_catus
TCTGGCAGATGCATATCCTTCAGTTAACCAAAATGCACATGGTGAAGTTTAAA-------TC---AAAA---TACAAAAG
CA-------TTCTTTATGGACTATATTGACTGTAGCTAACAATGCCATAT----TGCATATTT-----------------
--GATCTT----GTTCTCGTCACAAGAAACAAAAAATTTTTT--GTAGCTCTACATGGTGATGGA--TGTTAACTAGATT
TATTGTGGTGATCATTTTGCAAAACTACATACAAAGATCTCATCATTATGT---TGAATAC-----CAGAAGC-TAATGT
AATA---TAGGTCATCTGTACCTCAATTTAAAAT--------------AAAAGTATACGGAAGCT---AATGATCCAAGA
ATATTCTTGATAA-ACTAGGATTTTAGCTATTTAGCATT
>Manis_pentadactyla
TATG------ATACATACTGTGGTGAACTAAAATGCCTATGGCAAAGCTTATA-------TA---AAAAATATATAGAAG
CA-------TTCCTTATTGACTATATTGAGGATAGTTAATAATACTATAT----TGCATATTGGACAGTTGCTAAGAGAG
TAGATCTTAAAAGTTCTCATCACAAGAA--AAAAA-TTTTTG--GTAACTATATGTGATGATGGA--TATTAATGGGGCT
TATTGTGGTGATCATTTCTCAA---TCTTCACAAATATTGAATCATTATTT---TGTATAC-----CTAAAAC-TAGTGT
CATG---TATGCCAATTATATCTCAATTAAAA----------------AAATGTATACAGAAGGA---AATTATCCCAGA
GTACTTTCAATAA-AGTATAACTTTAGCTATTTAGCATT
>Sus_scrofa
TATGGT-GATACATGTAGTGCAGTTAACCAAAATGCATATGTCAAAGTTTAAA-------TC---AAAATTATACAGAAG
TG-------TACTTT---GACTATATTGATTATAGTTAATAACACTGT------CACATATTTGAAAGGTGCTAAGAGAG
TAGATCTTGTAAGTTCTCATCATAAGAA--AAAAA---TTTT--GTAACTACATTTAGTTATAGA--TGCTTACTAGACT
TATTGCAGTGATCATTTTGCAA---TATATACAAATATGGAATGATTATGT---TGTACAC-----CTGAAAC-CAG-AT
AATGTTGTAGATCAATTTTACCTCAGTTTCTT----------------AAAAGTATACAGAAGCA---AATGAT-CCAAA
ATATTTTTGATAA-AGTTTGATTTCAGCTATTTAGAATT
>Bos_taurus
TATGGTAGATAC-CATACTGCGATTAACCAAAATGCATAGGGCAAAGTTTAAA-------TA---TGAAATATGCAGATG
CA-------TACTTTATTGACTGTACCAACTATAGTTAATAACACTGTGT----TGTGCATTTGGAAGGTTCTAAGAGAG
TAGATCTTGTAAGTTCTTATCACAGGAA--AAACA--TTTTT--GTAACTATGTATAGTGACAGA--TGTTAACTAGGCT
TCTTGTGGTGATCATTTTGCAG---TATATACAAATATGGAATC---ATGT---TATACAC-----TTGAAAC-CAG-AC
AACTT--TATGTCAATTATTTCTCAATTTTAAA---------------AAAAGTATACAGAAGCA---AATGATCCCAGA
AGATTTTTGATAA-AGTATGATTTTAACTATGTAGCATG
>Equus_caballus
TTTGGTAGATACATGTACTGCAGCTAACCAAAAGGCGTACAACAAAGTTTAAA-------TC---AAAAGTATACAGAAG
CA-------TACTTTATTGACTATATTGACTAGAGTTCATAAAACTATAT----TGTGTATTTAAAAGTTGCTAAAAGAG
TAGATCTTAAAAGTTCTCATCACAAGAA--AAAAAATTTTTT--ACCACTAGGTATGGTGACAAA--TGTTAGCTAGACT
TATTGT-GTGATCATTTTGCAG---TATATACAAATATTGAATCATTATGTCAGTATATACAAATATTGAAAC-AAATAT
AATGTTATATGTCAATTATACCTCAATTTAAAA---------------AAAAGTATACAGAAGCA---AGTGATCCCAGA
ATATTTTTGATAA-AATATGGTTTTAGCTATTTAGCATT
>Ceratotherium_simum
TATGGTAGATATATGTACTGCAGTTAATCAAAATGTGTATGGCAAAGTTTAAA-------TC---AAAAGCATACAGAAG
CA-------TACTTTATTGACTATATTGACTATGGTTAATAAAACTATATTGCATGCATATTTAAAAGTTGCTAAAAGAG
TAGATCTTAAAAGCTCTCATCACAAGAA--AGAAAATTTTTT--GCAACTATCTGTGGTGACAAA--CATTAACTAGACA
TTTGGTAGTGATCATTTTGCAG---TATATACAAATATCGAATCAGTATGT---TATATAC-----CTGAAAC-AAGTAT
AATGTTATATGTCAATTAGACTTCAATTTTTTA---------------AAAAGTATACAGAAGCA---AATGATCCCAGC
ATATTTTTGATAA-AATATGATTTTAGCTGTTTAGCATT
>Myotis_myotis
TATGGTAGACACATGTACTGCAGTTAAGCAAAATGGATATGATAAAGTACAAA-------TC------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------AAAA-TATACAGAAGCA---AATGATCCCAAA
ATATTTTTGATAA-AGTATGAT--------TTTAGCATT
>Rousettus_aegyptiacus
TATAGTAGATACATGTACTGCAGTTAAGCAAAATGCAGGTAGCAAAGTTTAAA-------TC------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------AAAAGTATACACAAGCA---AATGATCCCAAA
ATATTTTTGGTAA-ACTATGATCTCAGTTATTTAGCATT
>Condylura_cristata
TATGATAGATACACACATTGAAGCTAA-CAAAATCTATGTAGCCAAGTATAAACCAAAGTTT------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------AAAAGTTTTCAGAAGCC---AGTTTTCTC--A
TTTTTTTTGATAA-AATGTGAT-TCAGCTACTTAGAATT
>Erinaceus_europaeus
CATAGTAGAAACATGTAC-----------------AATATGACAGCATTTAGA-------TT------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------AATAGTATGCAGAAGAA---AACCCTTCCATA
TTATTTTTGATAATCTTATGGATTTAACTATTTAACACT
>Cavia_porcellus
TATGGTACATAGATGTACTACCACTATCCAAAATACATATGGTGAAATCTAAA-------AC------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------AAAAGTATGCAGACTCA---AATGATTCCAGG
ATATTTTTAGTAA-AGTATAATTTTGACTGCTTGGTATC



Horse152_LINE

>L1MAB_EC
---------------------------------------------------------------------------CAAAT
CATTATGTTGTACACCTTAAACATAATACA-ATGTTATATGTCAATTATATCTCAATAAAACTGAAAAAAAAAAA-----
-------------------------------------------------------------------------
>Sus_scrofa
ATATGAGGGAAGCAGTCCGGC----TGGCAGTGGATGCCCATGCTGGTCACACA---AAACTGGTAGAATCT--------
TTTCATGCTGCACCCCTGAAAC---TTACGTATGTTATACGTGAATTTTACCTCAACCGAGCTGGAAAAAAATAAAACCC
----AAACCGGTGCAATGC---CTGTATGCCTTCACTATGAACCCTATCCACA-GACCAGAGACACGGGGTGG
>Tursiops_truncatus
ACACGAGGGAAGCAGTCTGGC----CGGTGACGGACGCCCATGCTGGTCACGTA---AAACCGGTGCGATGT--------
TTTCATGCTGCACACCTGAAAC---TTACATGTGTTACCTGTCAGTTATACCTCAATAGAGCTGGAAAAAAA-AAACCCC
----AAACTGGTGCCAGGT---CAACTTGCTCTTACCGTGAACCCCATCCACA-GGACAGGGACACTGGCTAC
>Equus_caballus
CCACAAAGGAATCAGTCTGGC----CAGTGGTGGACGCCCACTCAAGTCAGACG---AAACTGGTGCAACGT--------
AACCACGTTGTACACCTTAAAC---TTACATATGTTCTATGTCAATTCTATCTTAATAAAACTAGGGACA----------
----AAACC----CAATGC---CAACCTGCCCTCACGG-GAGCCCCACCCAAA-GGACGAAGACACAGGATAC
>Tapirus_indicus
ACACGA-GGAATCTGTCTGGC----CAGTG-TGGACATCCACTCAAGTCAAATA---AAACTGGTGCAATTT--------
TACCACGATGTACACCTTAAAC---TTACATATGTTCTATGTCAATTCTATCTCAATAAAACTTGGAAA-----------
----AAACC----CAGCGT---CAACTTGCCCTCACAGTGAGCCCCACCCAAA-GGATGAAGACATAGGATAT
>Condylura_cristata
GCACAAAGGAA-CAG-CTGGC----CA-TGGCAGGTGCCCACTCCC-----ATA---AAGCTGGTTCAAT----------
---CACCCTGGATACCTTAAGC---CTACATATATTAAATATCAATTATATCTCAATAGAGCTGATGGGAAG-AAATCCC
----AAACTGGTGCAACAT---CAACGTGCTGTCACTATGAACTCTGCCCAA--GGACACAGCCACCAGGTAC
>Solenodon_paradoxus
GCATGAAGGAATCACTCTGGC----CAGTGCTGG------ACTCAATTCAGATA---AA-CTGGTTCAGAGT--------
TATCACACTGCATACCTTTAAC---CTAC--ATACTATTTATCCATTATATCCC---AGAGCTGAA--AAAT--AATCCC
A---AAACTGCTGCGACAA---CAGCTGGTCCTTACT-TGAACTCTGTCCAAA-GGAC--AGACACAAGATAT
>Canis_familiaris
TCATGAAGGAATTGGCCTGGCGAGTTAGTGGTGGACGCCCATTAAAGTCAGATA---AAAGGGGTGTGACGT--------
--------------------------------------------------------------------------------
----------------------CAACTCATCCTCACTATGAACTCCATCCAAA-GGACAAAGACGTGGAATAA
>Felis_catus
TCATGAAGGAATCAGTCTGGC----TAGTGGTGGACGCCCACTCAAGTCAGATA---AAACTGGTGCAATGT--------
--------------------------------------------------------------------------------
----------------------CAACTTGTCCCCACTGTGAACTCCATCCAAA-GGAC--AAACACAGGATTC
>Manis_javanica
ACATGAAGGGACCGGTCTGGC----CAGTGGTGGACACCCATTCAAGTCAAGTA---AAACTGATGCAATAT--------
--------------------------------------------------------------------------------
----------------------CAATTTGCCCTCACTGTGAACTGCATCCAAA-GGAC--AGACACAGGATAT
>Myotis_myotis
GCATGAAGGAATCAGTTTGGC----CAGTGGTGGATGCCCACCCCAGTCAGATC---AAATTGGTGCAATGT--------
--------------------------------------------------------------------------------
----------------------CAAATTGGCCTTACTGTGAACTCTATTCAAA-AGATAAAGGCACAGGGTAG
>Rousettus_aegyptiacus
GCATGAAGAAATCATTCTGGC----CAGTGGTGGATGCCTACTCAAGTCAGATA---AAATT-GTGCAATGT--------
--------------------------------------------------------------------------------
----------------------CACCTTGCCTTCACTGTGAAGTCCATCCAAA-GGACAAAGACTAAGGGTTT
>Homo_sapiens
GCA---GGGGATCCCTTGGGC----CAGCACTGGGTGCTCATTCGAGTCAAATA---AAACTGATGTAATGT--------
--------------------------------------------------------------------------------
----------------------CAACGTATCCTCCATGTGAACTCCACCCAAAGGGACGAAGACACAGCACAG



Horse153_LINE

>L1MAB_EC
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------TTTTTTTTTTTCA------------GTTTT
ATTGAGATATAATTGACATATAACATTGTATTATGTTTAAGGTGTACAACATAATGATTTG--ATATATGTATATATTGT
GAAATGATTACCACAATGAAGTTAATTAACACATCCATCACCTCACATAGTTACAAATTTTTTTTTTGTTTKTGTGATGA
GAACTTTTAAGATCTACTCTCTTAGCAACTTTCAAATAT-ACAATACAGTATTATTAACTATAGTCACCATGCTGTACAT
TACATCCCCAGAACTTA-TTCATCTTATAACTGAAAGTTTGTACCCTTTGACCAACCTCTCCCTATTTCCCCCA-CCCCC
CA-GCCTCTGGCAAC-----------------------------------------------------------------
----------
>Canis_familiaris
ATAGAATTTCTAGAAGAAACA-TTAGTTTAAATATTTGTGACCTTAGATT---TGGCATTG-TTTTTTTTTTT---AATT
TTCATTCATTTACCCATTCATTCA--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TTCATCCATTCATTCGTGGTGTTGTCGTTGGCTTTATCTAGTCTATTTTTTATTTATTTTTTTTCTAGTCTA-TTTTTTA
ATTGAGATATAAGCGACTT-----ATCATATTA-GTTTCAGGTGTACAGCGTAATGGTTTGGGATATTTGTATCT-TTGA
GAAATAGTCACCA----GAGTCTAGTTA--AAATCCATCACCACACA--GTTACAAAATTTTTTCCCT----TGTGATTA
GAACTTCTAAGATCCACTCTCTTAGTAACTTTTAAATGT---------------------------ACAATGTGGTCCAT
TACATGCCCTTAGCTTA-TTTATTTTATAATTGGAAATTTGTATCTTTTGACCACCTTCACCC-ACTTCTACAA-CCCTT
GACACCTC----------TGGCATTGTTTTGTTT---AGACATGATACCAAAA---------ACC--AGAGAAAACCTAG
ACGAATTGGG
>Felis_catus
ATAAAACTCTTAGAAGAAACA-CTGGTTTGAATATTTGTGACCTTAGATT---TGGCACTGGTTTATTTATTT---AACC
CTTTTTAGTTCACTGATTTATTTTGAAAGACAGGGAGAGAGAGTGCGGGTGAGCAGGGGAGGAGCAAAGAGAGAGAGAGG
GAGAGAGAGAATCCCAAGCAGGCTCCTTGCTGTCAGTACGAAGCCTGACGCAGGCTCAATCCCACACACTGAAATCATGA
CCTGAGCTGAAATCAAGAGTCAGATGCTTAACCAACTGAGCCACCCAGGAGCCCCTGTTTCTTTCCTTCTTTATTTACAT
TTACTCATTCATTCAGTCATGCTGTTGTTTGGGTTT--------------------------ATCTAGTTTATTTTCTTA
ATTGAGATATAACTGACTT--------ATATTA-GTTTCAGGTGCACAGCATAATGGTTTGGCATATTTGTATTTATTGA
GAAATGATCACC---AGGAGTCTAGTTA--AAATCTATCATCACACA--GTAACAAATTCTCTTCCT-----TGTAATGA
GAACTTTTAAGATCTACTCTCTTAGCAACTTTTAAATGTAACACTGCAGTACTATTAACTAGAGTCATAATGCTGTACAT
TGCATGCCCATGACTTA-TTTATTTTGTAATTGGAAATTTGTATCTTTTGACCACCTTCACCC-ATTTCTCCAA-CC---
-------C----------TGGCATTGTTTTCTTT---AGATATGATACCAAAACTACAAGTAACC--AAAGAAAAACTAG
ACAAGTTAGA
>Sus_scrofa
ACAAAACTCTTAGAAGAAACA-C--GTTTAAATATTTGTCACCTGGGATT---TGCCATTGGCT-ATTTATTT---A---
--------TTTGTTTACTTGTTCT--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------TATTGCTGGCTTTA--------------------------ATCTCA-----TTTTTT-
-----GATATAATTCATTT-----ATTAAATTA-GTTTCAGGTGTATAATTTAAACATTTG--ATACTTGTATATGTTAA
GAAATGATCACCACAATAAGTCTTACTA--ACATCCATCACCACAGATGGATGCAATTTTTGTGTTCT---------TGA
GAACTT--AAGATTTACTCTTTCAGCAACTTTCAAATAT------ACCATACAACTGATTACAGTCACCATGCTGTACAT
TACATTCCCATGATTTATTTTATTTTACAGGTAGAAGTTTGT---CAAAGACCGTTTTCACCC-ATTTCACTCAGCT---
------------------------------------------------------CACAAGTAACC--AAAGTAAAAATAG
AAAAATTGAA
>Tursiops_truncatus
GTAAAATTCTTAGAAGAAACA-TAGGTTTAAATATCTGTTACCTTGGATT---TGCCATTGGTT-A--TTTGT-------
-----------------TTGTTTT--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------TGTTGTTGGCTTTA--------------------------ATCTAG-----TTTTTTT
AT----ATATAATTGACTT-----AT----TTA-GTTTCATGTGTATAACTTAATCATTTG--ATATTTGTACATGTTGA
AAAATGATCACCACGATAAGTCTAGTTA--ACATCCATCACCACGGATGGTTGCAAAT-GTGTGTGTG----TGTGGTGA
GAACTTTGAAGATTTACTCTCTTAGAAACTTTCAG------------TACGCAATTAACTATAGTTACTGTGCTGTACAT
TACATCCCCATGACTTA-TTTATTTT-TTCCTGGCAGTTTGTACCTTTTGACCACCTTTCCCC-ATTTCACCCAGCCCCC
CACACCCC----------TGGCATTGGTTATTTT---AGATATGATACCAAAAACACAAGTAACC--AAAGTAAAACTGG
AAAAATTGAA
>Equus_caballus
GTAAAACTCTTAGAGGAAACA-TATGTTTAAATCTTGGTGATCTTGGATT---TGCCATTTTTT-AA-ATTGT-------
-----------------TTATT----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------TGTTGGTTTTA--------------------------ATCTAGT----TTTTTTA
ATTGAGATATAATTGGCATA--ACATTATATTA-ATTTCAGGTGTACAACATAATGGTTCA--ATATTTCTATGTACTGA
GAAACGGTCAGCATAATAAACCTAGTTA--ACATCTATCATCACACATAATTACAAATTTTTTTCT------TATGATGA
GAAGTTTTAAGAT-TACTGTCTTAGCAACTTTCAAATAT-ACAATACAATATTACTAACTCTAGTCACCATGCTGTACAT
TACGTCCTTATGACTTA----------TAACTGGAAGTTTGTTCTTTTTGACCACTTTCACCC-ATTTTGTCCA-CCCCC
TACATCAC----------TGGCATGGGTTTTTTA---AGATATGATACGAAAAACTCAAGAGACC--AAAGAAAAACTAG
ACAAATTGAA
>Ceratotherium_simum
ATAAAATTCTTAGAAAAAACA-TGGGTTTAAATCTTGGTGAAATTGGATT---TTCCATTTTTT-AAAATTAT-------
-----------------TTATT----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------TGTTGTTCGTTTTA--------------------------ATTTGGTTAA-TTTTTTT
ATTGAGATATAATTGACTTACGACATTATATTA-GTTTCAGGTGTACAACATAATGGTTCA--ATATTTGTATATAATGA
GAAATGATCACCACAATAAGTCTAGTTA--ACATTCATCACCACACATAACTACAAATTTTTTTCT------TGTGATAA
GAAATTTTAAGATTTACTCTCCTAGCAACTTTCAAATAT-ACAATACAGTATTATTAACTCTAGTCACCATGCTGTACAT
TACATTCTCATGACTTA-TTTATTGTATAACTGGAAGCTTGTTCTTTTTGACCACTTTCACCC-ATTTTGCCCA-CCCCC
CACATCCC----------TGGCATTGATTTTTTA---AGATAAGATACCGAAAACTCAAGAAACC---AAGAAAATCTAG
ACAAATTAGA
>Myotis_myotis
ATAAAACTC-TAGAAAAAGCA-TAAGTTTAAATCTTTGTGACTCTGGATT---TGGCATTGG---AA-TTTTT-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------AGCTACGGCACCAAAAACATGAACAACC--AAAGAAAAACTAG
ACAAATTGAA
>Rousettus_aegyptiacus
AAAAAACTCTTGAAAGAAACA-TAAGTTTAAATCTTCGTGACCTTGGATT---TGGCATTG----AA-TATTT-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------TCGTATGACACCAAAAACACAAGTAACC--AAAGAACAACTAC
ACAAACTGAA
>Condylura_cristata
AG-AAAATCCTAGAAAGAATA-TAAGTTTGAATCTTTGGGGCTCTGAATT---TGGCATTTTTT--A-AAAGA-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------TCATATGA----AAAAACTCAAGTACCCATACACAAAATCTAG
ACAAACTGGA
>Sorex_araneus
ATGGGACATTTATTTAAAACAATAGGTTAGTAAT-----GACTTTGTCTC---TGGCATTTAA--TCTAAATA-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------TGATACCA----AAAA-TGCACATAACT--GAAGAAGAGTTAT
AT-AATTAAA
>Homo_sapiens
ATAAAACTCATAGAAGAAACA-TAGATTTAAATCTTTGTGACCTTAAATT---TGGCATTCTT-----TTTTT-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------AGATATGACCCCAAAA-CATAAGTAACC--AAAGAAAAACTAG
ACAAATTAGA



Horse154_LINE

>L1MAB_EC
-----------------------------------------------------------------------TTTTTTTTT
TTCAGTTTTATTGAGATATAATTGACATATAACATTGTATTATGTTTAAGGTGTACAACATAATGATTTGATATATGTAT
ATATTGTGAAATGATTACCACAATGAAGTTAATTAACACATCCATCACCTCACATA------------------------
-----------------------------------------------
>Canis_familiaris
AGTGAAAATAACAGAATCTTGGGGGCACTTTTTTAAGAATCTAAGCTATAT---TCTATTAACTGCTT-------ATTCT
TACAGATTTCATAAG-TATGAT--ATATATATGACT-TAT-AAGTTTAAGGTGCACAGGATAATTCTTTGGCTCTCAAAT
AT--TG-----CAATTATTGCAATAAATTTAATTAGC--ATCCTTC-------------ACTG-TACCCTTCT---GATC
CAGCTCCCAGTATGCTTTGTTTTAACCA-AATATACTTCAATCCAGA
>Felis_catus
AGTGAAAATAAAGGAATCTTGCAGGTACTTTCCTAAGAATTTGACCTGCTT---TCTATTAACCCTTT-----TTTTTTA
AATAGTTTTGTTAAA-TGTAATTGACACATATAACC-TAT-AAACTTAAGATGTACAGAATAATGTTTTCACTTTGAAAT
AT--TGTGAAATGATTACTGTAATAAAGTTAATTAGC--ATCCATC-------------ACCGCTAAACTCTT---GAAA
CAGTTTCCAGGATGCTTTGTTGTAACCAAAATGTACTTCAATCCAGA
>Manis_pentadactyla
AATGAAAATAATGGAATCTTGGGGATATGTTCCTAAGAATCTAACTTGCTT---TCTGATAACGTTTC-----TTATTTT
TCTAGTTTTATTGAGATATAATTGACATACATCCCTGTAC-AAGTTTAAGATGTACAGCATAATGATTTGACTTACACAT
AT--TGTGAAATGATTACAGCA-----TTAGGTTAGC--GACCATCA------------ATAATTAACCTTTT---GATC
CAGGTCCTGGTATGCTTGGTTTTAACAATAATGTACTTCAATCCAGG
>Sus_scrofa
AATGAAAACAATGGACTATTGAGGCCAGCTTCCTAAGAATCGGACTTACTT---TCTGTTAAAGTTTT-----------T
TCCAGTTCTATTGAAATATAATTCATATACATCAGTGTAT-AAGTGTAAAGTGTACAACATAATGGTTTGATTTACATAT
AT--TTTGAAATGATTATTGCAATACATTTAGTTAGC--ATCTATC-------------ATCATTAACCTCTT---GACC
CAGTTTCCAGTATGCTTGGTTTGAAGCATAATGTACTTCAGTCCAGA
>Bos_taurus
AGTGAAAATAATGGAGTTTTGGGACCACCTTCCTAAGAATCTGACTTGCTC---TCTGTTAAC-TAAT----------TT
TCTGGTTCTAATGAGATATAATTCACATCTACCAGTGTAC-AATTTGAGGATGCACAACATAATGGTTTGATTTATATAT
GT--TGTGAAATGATTATTGCAATACATTTAGTTAGT--ACCCATC-------------ACCATTAACCTTTT---GACC
CCATTCCCAGTATGCTTGATTTTAAGCATAATGTACTTCAATCCAGA
>Equus_caballus
AGTGAGAATAACGGATTCTTGGGGGTGCCTTCCTAAAAATCTAACT---TT---TC-GTCAACCTTTT------TGTTTT
TCTAGTTTTGTTGAGTTATAATTGACATACATCACTGTAT-AAGTTTAAGATATACAGTATAATGGTTTGACTTAGATAT
AT--TGTGAAATGATTACCACAATGAGTTTAGTTAGC--ATCCATC-------------GCCATTAACCTTTT---GACC
CAGCTCCCGGTATGCTTGGTTTTAAAC---ATATAGTTCAATCCAGA
>Ceratotherium_simum
CGTGAAAATAATGGAATCTTGGGAACGCCTTCCTAAAAATCTGACT---TT---TC-CTTAACCTTTT------TGTTTT
TCCAGCTTTATTGAGATATAATTGACATACATC---------------------ACAGCATAATGGTTTGATTTACACAT
AT--TGTGAAATGATTACCACAATAAGTTTAGTTAGC--ATCCATC-------------ACTGTTAACCTTTT---GACC
CAGCTGCCAGTATGCTTGGTTTTAACCATAATATACTTCAAGCCAGA
>Myotis_myotis
AGT----------GAATCTTGGGGGAACCTTCTTAAGAATCTGACTTGCTT-----------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------TCCATTAACCTTTT---GACC
CAGCCCCCAGTATGCTTGATTGTAACCATAATACACTTTAATCCAGA
>Rousettus_aegyptiacus
AGTGAGTACAGTGGAAT-----------TTTCCTAAGAATCTGACCTGCTA-----------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------TCAATTAACCTTTT---GACC
TAGCTCCCAGGATGCTCAGTTTTAACTATAATATACTTTAATCCAGA
>Condylura_cristata
AATGAGTACAATAAAATTTTTGGGCCATCTTCCTAAGGACCTGACTTGATT-----------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------TCCATTAACTTTTT---GACC
TAGATTCCTAAATGGTTGT----------------CTTTAACCCAAA
>Sorex_araneus
AGGGAATGCAAAGGAAAATTCAGAATAACTTTCTAAGAACCTGACTTGTTT-----------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------TTCATTAACCTTTT---GACC
CAGCTCCCAACATGCTTGCCTTTAATCATAATGCATTTCAATCCAAA
>Homo_sapiens
CATGAATGTAATGGAATCTCGAGGGCACCTTCATAAGAATATGACTTGCTT-----------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------TCCGTCAACTTTTT---GACC
CTGTTCCCAGTACACTTGGTTTTAATCATAATGTGCTTCCATCCAGA



Horse159_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----GTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCACCACACA--CAAAAAAATGGTAACTATGTGAG
GTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCT
TAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA----------------------------
--------------------------------------------------------------------------------
------------------------
>Sus_scrofa
AAAAACACTTTGCTCTGTGA------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------ATAT-GTTTTGGTCAGATAAAA-------TGC---AAAACAAAGTAGGTTCTAAGTA
T-----------GTGGTT-GCTAAGGGAGTAGATATTAAAAATTCTCAT--------AAGAAAAAGTATAAATATGTATG
GTGATAG--ATGTTCACTAGACTTACTCTGGTTATCATTTTGAAGTATATACAAATATTGAA---TCATGTTTTATACTT
GAAACTAATGTG-----------------------------------------------------------CTAT---AA
TAAACTA------TACT--TCATAGAGTTATTAGTTGAAGCTAAACAAGAGA----------------------TTGATA
TTAT--------TTAATTGTACTG
>Tursiops_truncatus
TAAGACACTTCCCTCTCTGA------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------ATAT-CTTTTGGTCAGGTAAAA-TGTATTTGT---AAAACAAAATAGATTCTAAGTA
T-----------GTAGTT-GCTAAGAGAGTAGATCTTAAAAGTTCTCATTACA----ATAAAAAACTGTAAATAAGTGTG
GTAATGG--ATGGTAACTAGACTTACTGTGGTGATCATTTTGCAGTATATACAAACATCGAA------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---T--------CTTGTTGTTCTG
>Equus_caballus
AAAGACACTTTGCTCTCTGA------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------ATGT-GTTTTGGTCCGATAAAA-TGCATGTGT---AAAACAAAGTAGATT----GTA
A-----------GTAGTT-GCTGAGAAAGAAAACCTTAAAAGTTCTCATCACACAC-ACAAAAATTGGTAACTGTGTATG
GTGGTAG--ATGTTAACCAGAC--ATTGTGGTGATCATTTCACAATATATACAAATATCAAATCATTATGCTGTACACCC
AAAATCAATATAAATGTTGAATGTCAATTATATCTCAATAAAA------------AAAC-CAAAGTAGGTTCTAT---TA
TCAAA--------AACT--TAACATAGTTATTAATTG----------AGAGA----------------------TTGAGA
TAAT--------TTAATTCTACTG
>Ceratotherium_simum
AAAGACACTTTGCCCTCTGA------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------ATAT-GTTTTGGTCAGAAAAAA-AGTATATAC---AAAACAAAGGAGATT----CTA
T-----------GCCATT-GCTAAGAAAGTAGATCTTAAAAGTTCTCGTCACAAGAAAAAAAAATTTGTAACTATGTATG
GTGATGA--ATGTTAACCAGACTTATTGTGGTGATTGTTGCGCAATATATACAAATATGGAATTGTTATGCTTTATACCT
GAAATTAATATA-ATGTTATATGTCAATTATA--TCAATAAAA------------AAAC-CAAAGAACTTTCTAT---TA
TCAAAA-------AACT--TAATATAGCTATTAGTTGAAGCTAATCAAGAGA----------------------CTGAGA
TAAT--------TTAATTCTACTG
>Canis_familiaris
AAAGACACTTTA--CTCTGATTTTTTTTTTTTTTCAGTTTTGCTACATTTCAATAGTAGGTATTTCAAGGGATTGTTT--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------TTAGGTC
TCATCAGCAACATCAAGCAAGAGACAGTGAGTACCCCACAGGGTACACAGCGCTGCCAAGCACCTTAGAAAATGTATGTG
ACTTGGAGAAAATGTAGTTCTGATTAT-GTTTGGGTCAGATAAAC-----TATAT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------AAAA-CAAAGTAGGCATTAT---TA
TTAAAAAAAAAGAAACT--TA----AGCTATCAATTGAAGCTA----AGAAA----------------------CTGAGA
TCAT--------TTAATTCTACTG
>Felis_catus
AAGTACACTTTAAGTTCTGA-----TTTGTTTTTCAGTTTTGCTGTGTTTTAATAGTCGGTATTTTAAGGGATTATTTCT
TAGATTTTTTAAATCATTTTTTTAACATTTATTATTGAGAGACAGAGAGAGACTGAGCATGAGCATGGGAGGGGCAAAGA
GAGGGAGAAACAGAATCCGAAGCAGGCTCCAGGCTCCGAGCTGCCAGCACAGAGCCCGACACCGGGCTTGAACTCACAAA
CCGCAAGATCATGACCTGAACCAAAGTCGGAGGCCTAACCAACCGAGCCACCCAGGCACCCTGGGATTACTTCTTAGATT
TTATCAGTAACATCAAACAAAAGGTACTGAGTATTCCACAAGGTACAGGGTGCTGCCAAGCACCTTAGAAAATTTACATG
ACTTGGAGAAAATGTGGTTCTAATTAT-GTTTTGGTCAGATAAAC-TGTATGCGT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------AAAAACAAAGTAGGTACTAT---TA
TTAAAAA------GACT--TAAT-TAGCTATTAATCAAAGATG----AGAGG----------------------TTGAGA
TTAT--------TTAATTCTACTG
>Manis_javanica
----ACACTTTG--CTCTCT------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------AAAT-GTTTTGGTTAGATAAAA-TGTATGCGT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------AGAA-CAAAGTAGGTACTAA---TA
TCAAAA-------CACT--TTATATAATTATTAATTA-------------------------------------------
-TAT--------TTAACTCTACTG
>Myotis_myotis
AGACAC-----------TGA------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------ATAT-GTTTTGCTCAGATAAAA-TTTATGTGT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------AAAA-CAAAGTA----CTAT---TG
TAAAA--------AACT--TAACATAGCTATTAATTGAAGATAATCAAGAGA----------------------T---GG
TTAT--------TTAATTCTACTG
>Rousettus_aegyptiacus
AAAGACACT--GCTCTCTGG------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------ATAC-ATTTTGGCCAGATAAAA-TGTGTGCAT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------AAAA-CCAAGTAGGTACTAT---TA
ACAAAGG------TACTAGTAACAAAGTTACTAATTGAAGATCATCAAGAGA----------------------TTGTGG
TTATTTTTGTGGTTAATTCTCCTG
>Condylura_cristata
CAACACACTTTGCTCTCTGG------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------ATGTAATTTTGGTCAGATGAAA-TTTATGTGT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------AAAA-----GAAGTTTCTAC---CA
TGAAA--------AAAT--GAACATAGTTATGGATTGAAGCTAATCAAATGAAATAGATTATAAAAAATAAAAATTGAGA
TTAC--------ATAATC---CTG
>Uropsilus_gracilis
CAACACACTTTTCTCTCTGA------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------ATATATTTTTGTTCAGATAAAA-TTTATGTAT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------AAAA-CAAAGTCATTTCTAT---CA
TGAA---------AAAT--GAATATATTTATGAATTGAAGCTAAGCAAAAGAATATAGTTAT---------GGATTAAGA
TTAT--------TTAATTATACTG
>Homo_sapiens
CATATCACTTTCCTCTCTGA------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------TTAT-TTTTTGCTCAAAAGAAAAAATATATAT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------AAAA-CAAAATAGGTTTTAT---TA
TAGA--------AAAAT------ACAGTCATTAATTGAAGTTAACCAAGATG----------------------CTGAAT
TTTT--------TTAATTCCACAG



Horse160_LINE

>L1MAB_EC
--------------------------------------------------------------------------------
----------------------------------TTTTTTTTTTTCAGTTTTA-----------TTGAGATATAAT----
TGACATATAAC-ATTGTATTATGTTTAAGGTGTACAACATAATGATTTGATATATGT-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------
>Sus_scrofa
AATCACA--TCACACACTAAAAACAACACTGAGCCATAGTGAGAGGTCAGTAAGTC---AGAGATAGCTATTA-------
--------------------TTATTTTTTAA-----ATATTTTAAATTTTTTAAATATTTTCAATTGAGATATAGC----
TGACATGTAAC-ATTTTATTA-GTTTGGGGTATTCAACATAATTATTTGCT---------GGAGATAGCTAT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TATTATT----T---G-TAA--TTAG----CGTCTCCATGTAAAAGCTCTTCCTTAGTAAAA
ATACAC----ACTAAT
>Bos_taurus
CATCACATGTCAAACGCTAAAAACAATACTCAGCCATGGGAAGAAGTTGGTAAGTC---AAAGATAGCTATGG-------
--------------------TAGTTATT-TT-------------------TTA---------AATTGAGATAAAAT----
TGATATATAAC-ATTATATTA-GTTTTGGGCATAGAACATAATGATTTGAT---------AAAGATAGCTTTTTAAAACA
ATTTTTTATTGAAGTATAGTCAATTTATAATGTGTTAATTTCTGTTGTACAGCAGAGTGATTCAGTTATATATATATATA
TAACACACACACATTTTCTTTTTAAAATATTCTTTTCCACTATGGTTTATCTTAGGATATTGACTTTATTTTTCTTTGCT
ATACAGTGTGACCTTGCTGTTTATCCATTCTATTTATAAACGCTTACATCTGCTAACCCCAGCTTCCCACTCCATCCCTC
CCCCAACCTCCTCCTCCTTGGCAACCACCAGAGTGTTCTCTACGTCCATGATTCTGTTTCAGAGATAGGCTCACTTGTGT
CCTATTTGAGATTCCACAGGAGGTGATATCATATAGTATTTGTCTTTCTCTTTATGACTTACTTCACTTGGCGTGACAAT
CTCTAGTTGCATCCATGTTGCTGCAAATGGCATTATTTCATTTTTTTTGTGTGTCTGAGCAGCATCCCATCAAACAGAGG
TACTAGGTCTTCTTTATCCATTCATCTGTCGATGGACGTTTAGACCGTTTCCATGTCTTGGCTATTGTGAGTACTGCTGC
TATGAACATAGGGGTGCTCGTATCTTTTTGAATTATAGTTTTGTCTGGATATATGCCAGGAAATGGAATTGCCGGATCAT
ATGGTAGTTCTATGTTTAGTTTTCTAAGGAATCCCTATATTGTCCCCCACAGTGGCTGCACCAACTTATTCCCACCAACA
ATGTAGAAGGGTTCTCTTTTCTCCACAGCCTCTCCAGCATTTATCATTTGCAGATTTTTAAAATATGGCCATTCTGACTG
GTGTGAGGTGGTACCTCATTGTGATTTTGAGTTGCATATCTCTAATAATAACGTTGAGCATCTCTTCATGTGCCTATTGG
CCAAAAGATAGCTATTATTACTATT---AT---G-TAA--TTAG----TGTTTCTGTGTAAA------------------
ATACAC----CCTAAT
>Equus_caballus
ACTCATGTGTTGAGCACTGATAACGATGCCCGGCCATGGTAAGAACTCAGTAAGTC---AAAGGTAGCTATTA-------
-------------------TTAGTTTTTATT------TCTATTCATTTTCTGG---------AATTGAGATTATATACAA
TGATATATAAC-ACTGTATTA-GTTTTAGGTGTACAACAAAGTGATTTGAT---------A--CATGGCTAA--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------AATTATT--------G-TTG--CTAG----TGTTTCCATGGAAAAGCTCTTC---TGTAAAA
ATACAG----ACTAAT
>Tapirus_indicus
AATTGCGTGTTGAGCACTGAAAACAATGCTCAGCCATGGTAAGAACTCAGTGAGTC---AAAGATAGCTATTA-------
--------------------TTATTTTTATC----------------TTTTTA----------ATTGAGATATGAT----
-----GATAAC-ATTGTATTA-GTTTTAGGCGTACAACATAATGATTTGAT---------AAAGACAGCTAT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TATTATT---TT---G-TAA--TTAG----TGTTTCCATGTAAAAGCTCTTC---TGTAAAA
ATATAC----ACTAAT
>Condylura_cristata
AACTCCATGCTGAGCATTAATAGCGATGCTCAGCCATGG-GGGACCTCAGTAAGTT---AGAACTGGCTACTA-------
--------------------TTTTTTAT-TC-------------------TTA---------AATTGAGATACAAC----
TGACCTATAAC-AATGTATTA-ATTTTAATTTTACAAAATAATGATTTGCT---------AAAG---GTGAT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------TACTCCTAAGCT---GATAACTTTAG----TGTTTCCATATAAAAGTTCTTC---AGTGAAT
ATACAC----ATTAAT
>Uropsilus_gracilis
AGTCA-----------------------------------------TGGGTAAGTC---AAGACCAGTCATTA-------
--------------------CTATTTTT-TA----------------TTTTAA---------AATTGAGACATAAT----
TGAT-TGTACCAAATTTATTT-ATTTCATTTGTACCAAATAATGATTTGCT---------AAAGAT--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------GATTACT--ATT---G-CAA--TTAG----TGTTTCCATA-AGAAGTTCTTC---AATGACT
ATACAT----ACTAAT
>Canis_familiaris
AATCACAT-TCGAGTGCTAAAAGCAATGCTCAGCCATGGTAAGAACTCAGTAAATC---AAAGATAGA------------
---------------------CATTATT-TC-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------G-TGA--TTAG----TGTATCCATGTAAAAGCTCTTC---AGGAAAA
ATACAC----ACTGAT
>Felis_catus
AATCACAGGT-GAGTGCTAAAAGCAATGTTCAGCCACGGTAAGAACTAAGGAAATC---AAAAATAGC------------
---------------------TATTATC-TC-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------G-TAA--CTCG----TGTGTGCGTGTAAAAGCTCTTT--GGGAAAAA
ATTCAC----ACGCAT
>Manis_pentadactyla
AATCACATGTCAAGTGCTAAGAACAATGCTCAGTCATGGTAAGAACTCAGTAAATC---AAAAATAGCTATTAT------
---------------------TATTATT-TT-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------G-TAA--TTAG----TGTTTCCATGTAAAAGCTCTTC---AGTAAAC
ATACAT----GGTAAT
>Myotis_myotis
AATCACGTGTTCAGCATCAAAAACAATGCTCAGCAATGGTAAGAACTCAGTAAATC---AAAGATAGCTATTATTA----
-----------------TTATTATTATT-TT-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------T-TAA--TTAG----TGTTTCTATGTAAAAGCTTTTC---AGTAAAA
ATACAC----ATTCAT
>Rousettus_aegyptiacus
AGTCACATGTTGAGCACTAAAAACAATGCTCAAACATGGTAAAAACTCAGTAAATC---AAAGATAGCTATTATTATTAT
TATTATTATTATTATTATTGTTATTACT-TT-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------G-TAA--TTAG----TTCTTTCATGTATAAGCTCTTC---AGTAAAA
ATACAC----ACTAAT
>Homo_sapiens
AAACACATGTTGAGCACAAAAAATAATATACAA----GGTAAGCACTCAGTAAAAC---AAAGATAGCTAT---------
------------------TATTATTATTATT-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------G-TAA--TTAGTCAATGATACCATGCAAAAGCTCTTC---TGTAAAA
AGACATATTGACTAAT



Horse163_LINE

>L1MAB_EC
--------------------------------------------------------------------------------
-----------------ATCAAATCATTATGTTGTACACCTTAAACATAATACAATG-------------------TTAT
ATGTCAATTATATCTCAATAAAACTGAAAAAAAAAAA-------------------------------------------
------------------------------------------------------
>Canis_familiaris
AATTA------CAAAAAAAGAAATGATAAATT---GCAAGAATAAACAAAA-AGTTACAC---AAGAAAGGAAAGAATAT
GTAAGTCA-AATCA------------TTGTGTTTTACACCTT-AAACTTATACCGTG-------------------CTGT
ATGTCA---ATATCTCAATAAAACCTTTAAAAAAAAA-------AAGGA-------------------AATAACCA---C
ATATACTACTTAGTTTAACAGTGAATAACACAT-----TATATAGGTATCATAA
>Felis_catus
AATTAAG---------AAGGAAATGATAAATT---GTAAGAATAAACAAAG-AGTCACAC---AAGAAAGGAAATAATAT
GTAAGACA-AATCA------------TTATGCTTCAGACCTT-AAACTTATACAGTG-------------------CTAT
ATG------ATACCTCAATAAAACCTAAAAAGAGAGAGA-----AATGA-------------------AATAACCA---C
ATATACTACTTAGCTTAGCAGT----AACACTT-----TATATAGATATTATAA
>Manis_javanica
AATTAAA--AATAAAAAAAGAAATGATAAATT---CTAATAAACAATAA---AGTTCTAC---AAAAAGGGAAATAACAT
CTAAGTTA-AATCA------------CTAGGATGTACACCTT-AAACTTACATAGCG-------------------CACT
CTATCAAATACGCATCAATAGAACTTTACAAAAATAAGAGA---AAGAA-------------------AACAATCA---C
ATAAACTGCTTGGCTTAGCAGCGACTAACATTT-----TATGTAAGTACTATAA
>Sus_scrofa
AAGTAAAGTGGGAAAAGAGGAAATGATAAATT---CCAAGAATACACAGAA-AGTCAAAT--------AGAAAACAACAC
A--------AATCA------------TTATGCTT---------AAACTTATACAGTG-------------------CAGG
AAGTCAACTATGTCACAATAAAACCTTAAAAAAAAAGA------AATGA-------------------AATAATCA---C
ATATACTGCTTGGCTTAGCAGTGCATAACACTT-----TATGTAGACATTAGAA
>Bos_taurus
TATTAAA--AGCGAAAAAAGTAAATATAAATT---CCAGAAATACATAAAAAAATTGTAC---AAGAAAGGAAATAACAC
AGAAGTCA-AATCA------------TTGTGCTGTACATCTT-GAACTTATACAGAG-------------------CTGT
AAATCAACTATATTTTAATAAAACCTTAAACAAAACACA-----AATGA-------------------AACAATCA---C
ATACACTACTTGGCTTAGGAGTGGATAATCCTT-----TATGTAGAC---ATAA
>Equus_caballus
AATTAAG----AAAAAAAGGAAACGATAAACT---CTAGGAATAAACAAAA-AGTTGTAC---GAGGAAGGAAATAAAAT
ATAAGTCA-AATTG------------TTACGCTGTACACCTTAAAACTTATACAGTG-------------------CTGT
ATGTCAATTATATTTCAATAAAACCTTAAAAAAAAAGA------AAGGA-------------------AATAATCA---C
ATATACTACTTGGCTTAGCAGTGAGTAACACTT-----TATACAGACCTTATAA
>Ceratotherium_simum
AATTAAG--AACA-AAAAGGAAATGATAAATT---CTAGGAATAAACAAAA-AGTTGTAT---AAGAAAGGAAATAATAC
ATAAGTCA-AATCA------------TTATGCTGTATACCTC-AAACTTATACAGTG-------------------CTGT
ATGTCAATTATATCTCAATAAAACCTTAAAAAAAAAGA------AAGGA-------------------GATAATCA---C
ATACACTACTTGGCTTAGCAGTGAATAACACTT-----GATGTAGACATTATAA
>Rhinolophus_ferrumequinum
AATTAA----------GAAGAAATGATAAATT---CCAGA----AACAAAA-AGTTGTAT-------AAGAACATAATAC
GTAAGTCAAAATCA------------TTATGCTATACACCTT-AAACTGATACAGCGTTATGTATCATTATGTATACTGT
ATGCCAACTACATGTCAATGAAATCTTTAAAAAAGA--------AAGGA-------------------AATAATCA---C
ATATATTACTTGCCTGAGCAGTCAATAACACTT-----TATATAGACATTATAA
>Rousettus_aegyptiacus
AATCAAG----AAAAAAAGTAAATGATAAATT---TCAGGA----ACAAAA-AGTTGTAC-------AAGGAAATAATAT
GTAAGTCT-AATCA------------TTATGCTGTACATTTT-ACACTTATACAGTGCCATATGTCACTATATATACTGT
ATGTCAACTATATCTCAATAAAACCTTTAAAAAAGA--------AAGGA-------------------AATAATCA---T
ATATATTACTTGGCTTAACTGCTGACAACACTTTATTATATATAGATACTATAA
>Condylura_cristata
AATTAAGATATTAAAAAGGGCAATGATAAATC---CCAGGAGTAAGCAGAC-AGCTGCAC--------------------
--------------------------------------------------------------------------------
--------------------------------------------AAGAACTAAAATAACAGCAATGCTAGTAGTCA---C
C-ATATTACTT-GTACAGCTGTAACAAACAAAG-----AATGTAGCTATTTTGA
>Uropsilus_gracilis
AGTTAAG-AAATAAAAAGGGAAATAATAAATT---CTAGGAATAAGCAGAG-AGCTGAAC--------------------
--------------------------------------------------------------------------------
--------------------------------------------AAGAAAAGTAATTAC---TAAGCTAATAATCA---C
T-GTACTACTTGGTACACCTGTGAATAACACCT-----TATGCAGAAATCTTAA
>Homo_sapiens
CATGAAG-GGGAGAAAAAGGAGATAATAAATAATTCCAGGAATAAACAAAA-AGCTATAT--------------------
--------------------------------------------------------------------------------
--------------------------------------------AAGGA-------------------ACTAACCA---T
ATATATTACTTGGCTTAACAGTGAATAATACTT-----TACGTAGATGTTATAA



Horse165_LINE

>L1MAB_EC
--------------------------------------------------------------------------------
-TTTTTTTTTTTCAGTTTTATTGAGATATAATTGACATATAACATTGTATTATGTTTAAGGTGTACAACATAATGATTTG
ATATATGTATATATTGTGAAATGATTACCACAATGAAGTTAATTAACACATCCATCACCTCACATAGTTACAAATTTTTT
TTTTGTTTKTGTGATGAGAACTTTTAAGATCTACTCTCTTAGCAACTTTCAA--ATATACAATACAGTATTATTAACTAT
AGTCACCATGCTGTACATTACATCCCCAGAACTTATT-CATCTTATAAC--TGAAAGTTTGTACCCTTTGACCAACCTCT
CCCTATTTCCC----CCACCCCCCAGCCTCTGGCA---ACCACCAATCTATTCTCTGTTTCTATGAGTTTGGTTTTTTTT
T------------------------------TTTAGATTCCACATATAAGTGAGATCATGCAGTATTTGTCTTTCTCTGT
CTGACTTATTTCACTTAGCATA----------------------------------------------------------
--------------------------------------------------------------------------------
----ATGC-------CCTCAAGGTTCCATCCATGTTGTCACAAATGGCAGGATTTCCTTCTTTTCTTTTTTATGGCTGAA
TAATATTCCATTGTATATATATAC--------------------------------CACATT-------TTCTTTATCCA
TTCATCCATCAATGGACACTTAGGTTGTTTCCATRTCTTGGCTATTGTGAATAATGCTGCAATGAACATG-GGAGTGCAG
ATATCTCTTCAAGATTAG--------------------------------------------------------------
-------------
>Canis_familiaris
GCTTCCTCCCACCACCCCTATTTAAAA-TTTCATGACCTG------TCATTTTGCCA-CTT-----------ATTTTT--
----------------T-AATTGAGGCATAATTGACA-------TTATATTA-GTTTCCGATGTAC---ATGATAATTCA
GTATCTGTACATATCACGAAATCAGCGCTGCAGCAAGTCTA---------------------------------------
----------------------------ATCTACTGTCTTAGCAACTTTCAA--AAATGCAATATAGTATTACTAACTGT
AGGATCCATGCTGTATGT-----CCCCATGATCTACT-TATTCTATAAC--TGGAAGTTTGTATCTTTTCAGCCCCTTCA
CCCGTTCTCCCAC--TCTCTACCCCACCCCTAGCAACCACCACCAATCTCTTTTCTGCAT--GTGAGCTT-TTTTTTTTT
TCA----GTTATTATTCCATATTTAA-TTAATTTAGATTCTTCATTT-AATGAGATCATAAGGTATTTGCCTTTATCTGT
CTGATTTATTTCACTTGATATA----------------------------------------------------------
--------------------------------------------------------------------------------
----ATGC-------CTTCAAGA-TCCATTTCTGTTAT--CAGATGGCAAGATTTCC--------TTTACTATGGATGAA
TGATATTCTATTTTATACACATGTACACACACAAACAGACACACACACACACACATCACATT-------TTCTTTATATA
TTCATCCATCGATG---AC--AGTTTGCTTCTGTATCTCGGCTATTATAAATAATGCTG-AGTGAACACAGTGGGTGCAT
ATGTCTTTTTG----------CAGGGTTGGTTCCT---AAAGACTGTGTGCA---ATACCTCCCT-GCTCCATCATAACT
-GGAGATTTCACG
>Felis_catus
ATTTCCTCCCACCACCCCTATTTAAAATTTTCATCACCTAAAATTTTCATTTTGCCA-TTT---TAGAATTTATTTAT--
----------------TTAATTGAGACATAACTGACA-------TTATATTA-GTTTCAGGTGTACAATATAATAATTTG
ATAACTGTATATATGATGAAATAATCACTGCAATAAGTCTA---------------------------------------
----------------------------ATCTACTATCTTAGCAACTTTCAA--ATATGCAACACAATATTACTAACCAT
AGGGTCCATGCTGTGCAT-----ACCCATGACTTACC-TATTCTATAAC--TGAAAGATTGGATCTTTTGAGCCCCTTCA
ACTATTTGCTCAC--TCTCTAACCCATCTCTGGCAACCACCACCAATCTGTTTTCTGCACAGGTGAGCTTGTTTTTTTTT
TTAAATTATTATTATTCCATATTTAATTTAATTTAGATTCTACATTTAAATGAGATAATAAGATATTTACCTTTCTCTGT
CTGACTTATTTCACATAGCATA----------------------------------------------------------
--------------------------------------------------------------------------------
----ATGC-------CCTCAAGA-TCCATCCACGCTGTCACAAATAGCAAGATTTCC---------TTTTTATGGCTAAA
TAATACTCCATTGCATGTATGTATACACACACACACACACACACACACACACACA-CACACACACACACTGCATTATCCA
TTGATCCATTGATG-ATACTTAGGCTGTTTCCACATCTTGGCTATTGTAAATAATGCTG-AATGAACACAGGGGGTGCAC
ATGTCCTTTTG----------TAGGATTCATTTTT---AAAGACTGTGTGCT---ATACGTCCCT-GTTCTATTATAATT
-GGAAATTTCACT
>Manis_javanica
GTTTCCTCA--------------------TTTGTCATAT-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----TCCCATTGTACCTATATGA--------------------------------CATATC-------TTCTTTATTCC
TTCATCCATCAATTGAC----AGTCTGTTTCCATATCTTGGCTACTGCAAATGATGCTGCAATGAACATG---GGGATAA
ATATGTTCTCG----------AAGGGCTGGTTCAT---AAACGGCATGTGTT---ATACAAATCTGGTTCCATAATAACT
CCCAGATTTCACA
>Sus_scrofa
GTTTCCTCCTGCCAGCACTATTAA-----TTCATCACCTG------CCATTCTGACA-TTT---CGGGATGGTTTGTT--
--------------TTTCAATTAAGGTATAATTAACA--------TGTATTA-GTTTTAGGTGTACTAAACAATGATGTA
ATATTTGTATATACTGTGAAATCATCACCACAGTAAGTCTC---------------------------------------
----------------------------GTCTACTGTCTCAGCAACTTTCAA--AAACGCAATACAGGATGGTTACCTAT
TATCACCATGCTGTACATTACAGCTCCATGACTTAGT-TCTTTGATAAAAGTAGAGGTGTGTGCTTTTTTATCCCTTTAC
CTCTTTCACCTGG------------CTCTCTGGCA---ACCACCAATC-GTTCTCTATATCTGACAGCTCTTTTTTTTTT
TT-----------------------------TAAAGATTCCATTTATAAGTGAGATCATACAGCATTTGCCTTTCTTTGT
CTGACTCACTTTACCTAGCATAGTAAAGAGCACTTTCTTTCTTTGTTATTTTTAATTGTTCTAATTAGAGTGTAGTTGAT
TTAGTGTTGTGTCCATTTCTGCTGCACAGCAGAGTCAGTCATTCATACACATACATTCATTTTCTCATATTATCTTCCAT
CATGATGAAGATCCCTTTCAAGT-TTCATCTATATTGTTACAAATGGCAAGGTTTTC-----TTCCCTCTCATGGCTGAA
TAAGAGCCCAAGGTATTTGTGAAC--------------------------------TACATT-------TTCTTTATCCA
-TCATTCATGAATGGACACTTAGGTTGTTCCCATATCTTGACTGGTGTACATAACGCTGCAGTGAACACG---GGAGCAC
GTGTCGTTTTG----------CAGGTCTGGTTCTT---AAAGATCATGTGCT---ACAGCCCCCT-GCTCCTTCACAACT
-GGGGATTTGACT
>Bos_taurus
GTTTCCTCCCACCAGCACTACTGATAATTTGCATCACCTG------CCGTTACGACA-TTT---CAGGATT----TTT--
-----------------AAATTAAGGTATAATCAACAAATAACATTATATTA-ATTTCAGGTATACAAC---AAGATTCA
ACATTTGTATATATTGTGAAATAATCACCACAAGAAGTCTAGTCTG----------------------------------
----------------------------GTGTAATGTCTCAGCAACTCTCAAATATATGCAACAGAGTATTGCAAACTAT
TGTTACCATGCTGTACATGACACCCCCATGCATT----TCTTTTAT-AC--TGCAAGTCTGTACATTTTCATCACCTGCA
TCCACTCGCCTAT--CCCTCACCCTGACTCCGGCC---ACCACCAATCTGTTCTCTGAATCTATAAGAGCCTTTCTTTTT
T------------------------------TTCGGAGTCCCTCTAAAATTGAGATCTTACACTATTTGTCTTTCTCTGT
CTGATATATTTTACTTAGCATA----------------------------------------------------------
--------------------------------------------------------------------------------
----GTGAAAATCAGTTTCAAGT-TCCATCTATGTTGTTACAAATGGCAAGATTTCC-----TTCTTTCTTTTGGNNNNN
NNNNNNNNNNNNNNNNNNNNNNNN--------------------------------NNNNNN-------NNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNN----------NNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNN
>Equus_caballus
GTTTCCTCCCAA-ACCACTACTTAGACTTCTCATCATCTG------CCATTTTGCCA-TTT---CAGGATTTTTTTTT--
----------------TTAATTGAAGTATAATTGACATACAACATTATATTA-GTTCCAAGTGTACAAC---ATGATTCA
AGATTTGTTTCTATTCTGAAATAATTACCATAATAAGTGTAGTCTC----------------------------------
----------------------------GTCTACAGTTTTAACAACTTTCAA--ACATGCAAAACAGTAT---TAAATAT
AGTCACCACGTTGTACATCACATCCCCATGACTTATT-TATATTATAAC--TGTAAGTTTGTACC-TTTGACCCTCTTCA
TCTATTTTCCCCCCATTCCCACCCCGTCTCTGTCA---ACCACCAATCAGTTCTTTGTATCCATGAGGTTGTCAGTTTAT
TTT----------------------------TTTGGATTCCACATATAAATGAGATCCTATTGTATTTGTCTTTCTCTGT
CTGACTTATTTCACTTAGCATA----------------------------------------------------------
--------------------------------------------------------------------------------
----ATGT-------CCTGAAGG-TCCATGCATGTTGTCACAAATGGCAACATTCTC------TTCTTTTCATGGCTGCA
TAGTATTCCATTGTATATTTATGC--------------------------------CACATA-------TTCTTTATCCA
TTCATCCATTGATGGACAC--AGGCTGTTTCCCTATCTTGGGTATTGTAAACATTGCTGAGATGAACACA-GAGGCACAT
CTGTCTTTTCA----------CAGGATTGGTTCTT---AAAGATCATGTGCT---GTACCTCCCT-GCTCCACCCTAACT
-GGGGATTTCACT
>Ceratotherium_simum
GTTTCCTCCCAACACCACTACTTATCATTCTCATCATCTG------CTGTTTTGCCA-TTT---CAGGACTGTTGTTG--
---------TTTCTTTTTAATTGAAGTATAATTAACATATAACATTATATTA-GTTTCAGGTGTACAACATAATGATTCA
ATATTTGTTTATAATCTGAAATAATCACCACAACAAGTCTAGTCTA----------------------------------
----------------------------GTCTACTGATTTAACAACTGTCAA--ATATGCA--AGAGTATTATTAACTAT
AGTCACCATGTTGTACATTACATGCCCATGACTTACTGTATTTTATAAC--TGTAACTTTGACCCTTTTGATGCTTTTCA
CCCAT-----------------CCCATCTCTGGCA---ACCACCAATCGGTTCTTTATATCCATGAGCTCGTTTTATTTA
TTTATT-------------------------TTTAGATTCCACATATAAATGAGATCATACGGTATTTGTCTTTCTCTGC
CTGACCTATTTCACTTAGCATA----------------------------------------------------------
--------------------------------------------------------------------------------
----AGGC-------CCTCAAGA-TCCATCCATGTTGTCACAAATGGCAAGATTTCC-----TTCTTTTTCATGCCTGGG
CAGTATTTTATTGTATATTTATGC--------------------------------CATATA-------TTCTTTATCCA
TTCACCCATCGATGGACAC--AGGCTGTTTCCCTATCTTGGGTATTGTAAATATTGCTGCAATGAGCATA-CAGGTGTGT
ATGTCTTTTCA----------CACAATTGGTTCTT---AAAGATCATATGCC---ATACCCACCT-GCTCCATCATAACT
-AGGGATTTCATT
>Myotis_myotis
GTTTCCTCCCATTACCACTATTTACAATTCTCATCACTTG------CCAGTT-GCCA-TTT---CAGAGCTGGGTGTT--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------AAATATCTTGTGCCAAAATATCTGCAT-GCTCCATTATAACT
GGGGGATATCACT
>Rousettus_aegyptiacus
GTTTCCTCCCACTACTACTACTTAAAATTCTCATCACTTG------CCATTTTGCCA-TTT---CAGGATTGGGTCTT--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------AAAGATCATGTCCC---ATGCCTGCCT-GCTCCATCATAACT
-GGGGATTTTGCT
>Condylura_cristata
GTTTCCTCCCACTGCCATTATCTACAATTTGTATCACCCT------CTACTTTGCTG-CCT---CAAGATTGTTCTTT--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------AAAGAACACGTGTC----------TCTTGCTCCATCATAACT
-GGGAGTTTCACT
>Homo_sapiens
GTTTCCTCTCTCTACCACCAC----AATTCTTTTCACCTG------ACATTTTGCCATTTT---TGGGA--GGTTTTC--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------AAGGATCATATCCT---ATGCCTCCCT-GCTCTGTCATAACA
-GGGGATTTCACT



Horse166_LINE

>L1MAB_EC
--------------------------------------------------------------------------------
-AACCTTGAGGGCATTATGCTAAGTGAAATAAGTCAGACAGAGAAAGACAAATACTGCATGATCTCACTTAT-ATGTGGA
ATCTAAAAAAAAAAAACC---------------------AAACTCATAGAAACAGAGAATAGATTGGTGGTTGCCAGAGG
CTGGGGGGTGGG------------GGAAATAGGGAGAGGTTGGTCAAAGGGTACAAACT-----------------TTCA
GTTATAAGATGAATAAGTTCTGGGGATG-TAATGTACAGCATGGTGACTATAGTTAATAATACTGTATTGTATATTTGAA
AGTTGCTAAGAGAGTAGATCTTAAAAGTTCTCATCACAMAAACAAAAAAAAAATTTGTAACTATGTGAGGTGATGGATGT
GTTAATTAACTTCATTGTGGTAATCATTTCACAATAT------------------------ATACATATATCAAATCATT
ATGTTGTACACCTTAAACATAATACAATGTTAT---------------ATGTCAATTATATCTCAATAAAACTGAAAAAA
AAAAA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------
>Canis_familiaris
TTTTTTT--------------AAAGGGCTCCAGCAACAAGAATTTTCTGACTCTAATC---AAGAGATAAACAAAATA--
-------GAGGACATTATGCTAAGTGAAGTAAGTCAGACAGAAAAAAACAAGTGTCATTCGATCTCACTTAT-GTGTAGA
ATCTAAAAACCAAAAAAAGA-----AAAAAAAAAAACCTGAACTC--AGATCAAAAGCAGTGATTGTTGATTGCAGGAGG
TA-GGAAGTAAG------------CAAAAT-GATTGAAGGTGCTCAAAACACACAAACT-----------------TCCA
GTTATAAAATAATTAAGCCATGGGGATG-TGATACACAGCATGCAGACTATAGCTAATAACACTACACTGTATGTTTGGA
AGCTGCTAAGAAATCAGATCTCAAAAATTTTCATTACA-----AGAAAAAAAATGTGTAAC--TGTATGGTAATGAA--T
GCTAACCAGAC--ACTGTGGTGATCATTTTGTAATA-------------------------ATACAAATATCAAATCATC
GCACTGTTTACCTGAAAC-TAACATAATGTTACACATTATGTTACATAATGTTAATTATCTCTC----------------
--------AAAAA-------TCAACAA---AATAAAAG-----ATACTTGAGCTACCTTCT----GAATCTT-TC-----
--------------------------------------------------------------------------------
-----------------------------------------------TTGCTGACC-----AAGACCTGTG
>Felis_catus
TTTATTTTTT---------AAAAAGGGTTCTAGCAACAAAAATTTTCCAACTCCATTC---AAGAGATAAACAAAACA--
-------GAGGGCATTATGCTAAGTGAAACAAGTCAGA--GAGAAAGACAAATACTGTATGATCTCACTTAGAATGTGGA
ATCTGAAAACCAAAAAGA-----------ACAAACACCTGAACTC--AGATAAAAAGAAGTGATTGGTGGTTGCCAGGAG
TAGGAATGTGGG------------CAAAAT-GATCGAAGGTGGTCAANNNNNNNNNNNN-----------------NNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------------------NNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------------
--------NNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----
--------------------------------------------------------------------------------
-----------------------------------------------NNNNNNNNNNNNNNNNNNNNNNNN
>Manis_pentadactyla
TTTTTTTC--------------AAAGGCTCTAGCAACAAAAATTTTCCAACTGCAATC---AAGAGATAACCAAAGTA--
-------GAGGGCATTATGCTAAG---------TCAGACTGGAAAAGACAGATACCATATGATCGTACTTAC-ATGTGGA
ATCTAAAACA-----------------------------AAACTTACAGACACAGAGACCAGATTGGTGGTTGCCAGAGG
CA-GGGGTTGGA-----AGATGGGCAAAGT-GGTTGAAGGTGGTCAAAAGGCACAAACT-----------------TCCA
ATTATGAA----------------GATA-CAATGTACAGAATGGTGACA-GAGTTAACAATACTATACTGTATATTTGAA
AATTGCTAGGAGAGTAGATTCTGAAAGTTCTCATCACAA----GAAAAAAACATTTGTAACTCTGT--GGTGAAGGA--T
GCTAACTAGACTTACTGTGGAGATTATTGTATAATAT------------------------ATACA-ATATTAAATTAT-
----TCTACACCTAAAAC-TAATATAATGTCGT---------------ATGTCAATTATCTCTCAAAA------------
--------AAGAGAAAGAAAACAAATA---AATAAAAG-----GTACTTGAGTCACCTTC---------CTT-TT-----
--------------------------------------------------------------------------------
-----------------------------------------------CTGCTGACTTTAGAAAGACCCTTG
>Sus_scrofa
TTTTTCTTTTCT-------GGAAAGGGCTTTAGCAACAAAAGAGTTCCAACTC----C---AAGAGATAAACAATATA--
-------AAGGGCGTTATGCTAAGTGAAATAAATCGGACTGAGAAAGACAAATACCATATGATCTCACTTAC---GTAGA
ATCTAAAAAAGAAAAACA----------------AAACCAAACTC--AAATACAGAGAACAGACTGGTGGTTGCCAGACA
CA-GGGGGTGGA------------TGAAAT-GGTTGAAGGTGGTCAGA-GGTACAAACT-----------------TCCA
TTTGTAAAATAAATAAATGATGGAGATGCCAGAGTACAGCATGATGACT-CAGCTATTACTACTA-----TATATTCAAA
AGTTGCTAAGATTATAGATCTTAAAAGTTCTCATCACATG---AAAAAAAAAATCTGCAACTATGTGTGGTGATGGA--T
GCTGACTAGACTTA---TAATGATCACTTTGGAATAT------------------------ATATAAATATCAAATCATT
ATGTTGTCTCCCTGAAAC-TAATATAATGTTAT---------------ATATCAATTATATCTCAA--------------
--------AAGAGA------TAAAATA---AATAAATG-----ATATTTGAGCCTCCTTCTGAAAGAACCTTCTT-----
--------------------------------------------------------------------------------
-----------------------------------------------TTGTTGACTTTTGGAAGACTCATT
>Bos_taurus
CTTTTTTTTTTTTTTTCCTGAAAATGGTTCTAGCAACAAAA-TTTCCCAGCTC----T---GAGAG-TGAACAACATG--
-------GAGGGCATTACACTAAGTGAAATAAATCAGCCTGAGAGAGACAAATACTGTATGATCTCACTTAT-ATGTGGA
ATCTAAAAAAAAAAAAAAAAATCACACAAACAAAAAAATGAACTC--AGATACAGAGAATAGACGGGTGCTTGACAGAGG
CAGAGGGGTGTGCACCGGGATGGACAAAAT-GGTTGACTGTGATCAAAGGTCACAGATCAAAGGTCAAAGGTCATACTTA
CTTATAACATAAGTCAGTCACGGGGATG-CAGTGTACAGCATGGTGACT-TGATTATTAACACTCTATTGTATATTTGAA
AGTTGCTAAGATAGTGGGTCTTCAAAGTTCTCACCAC------AAGAAAAAGATTCTTCACTGTGTATAGTGGTGGA--T
GCTAATTAGACTTG---CGGTGATAGTTCTAGAATACATTTCCCTCCTCAGTTTTAAATACATACAAATATCAAATCATT
ATGTTAGATACCTGAAAC-TAATGTAAT--------------------ATGTTGATTACATCTCAAAAAAAAA-------
--------AAGAGA-----------TA---AATAAAAG-----ATACTTGAGCCTTCTTCTGAAAAAAACCTCACT----
--------------------------------------------------------------------------------
-----------------------------------------------TTGCTGACTTTTGAAAGAACCCTT
>Equus_caballus
TTTTTTT------------AAAAAGGGATCTAGCAATAAAAATGTTCCAGCTCCAATC---AAGAGATAAACGAAATA--
-------GAGGGCATTATGCTAAGTGAAATAAGTCAGACTGAGAAAGACAAATACTCTATGACCTCAAGTAC-ATGTGGA
ATCTAGAAAAACAAAACA---------AAACAAAAACCCAAATTCATAGATACAGAGAATAGATTGATGGCTGCCAGAGG
CAAGGCGTTGGG----GGAGTGGGTGAGAT-GGGTAAAGCAGGTCAAAAGATGCAAACT-----------------TCCA
GCTATAAAATAAGTCAATCATGGGGATG-TGGCATACAGCATGATAACTAGAGT---TAATACTATACTGTAAATTTGCA
AGTTGCTAAGAGAGTAGATCTTAGAAGTTCTCATCATAA----GAAAAGAGAATTTGTACCTATGTGCGGTGATGGA--T
GCTAACTAGACTTCTTGTGGTGATTATTTCGCAATAC------------------ATACAAATACAAATATTGAATCATT
ATGTTGTACACCTGAAAC-TAATGAAATGTTAT---------------ATGTCAATTGTAGCTCAAAAA-----------
--------AAGAGGT--AAACAAAATA---AATAAAAG-----ATACTTGAGCCACCTTCTGAAAGAATCGTTTT-----
--------------------------------------------------------------------------------
-----------------------------------------------TTGCTGAGTTTTGAAAGATT--TT
>Ceratotherium_simum
TTTTTC---------------AAAGGGCTCTAGCAATAAAAATTTTCCAGCTCCAATC---AAGAGATAAACAAACTA--
-------GAGGGCATTATGCTAAGTGAAATAAGTCAGACTGAGAAAGACAAATACTCTATGATCTCATTTAT-ATGTGGA
ATCTAAATAAAAACAACA---------------------AAGTGCATAGATACAGAGAATGGACTGATGGTTGCCGGAAG
CA-AGAGGTGGG---GAGAGCATGTAAGAT-GAGTGAAGG-GGTCAAAAGATACAAACT-----------------TCCA
GGTGTAAAATAATTAAGTCATGCAGATG-CAAAGTACAGCATGGTAACTATAGT---TAATTCTATATTGTAAATTTGAA
AGTTGTTAAGAGAGTAGATCTTAAAAGTTCTCATCACAG----GAAAAAAGAATTTGTGTCTATGTGTGGTGATGGA--T
GCTAACCAGACTTACTGTGGTGATTATTTCACAATAC------------------ATACAAATACAAATATTGAATCATT
ATGTTGTACACCTGAAAC-TAATAAAATGTTAT---------------ATGTCAATTATGTCTCTAAA------------
--------AAGAGAT--CAACAAAATA---AATAAAAG-----ATCCTTGAGCCACCTTCTGAAAGAATCTTCTT-----
--------------------------------------------------------------------------------
-----------------------------------------------TTGCTGACTTTTGAAAGATTCAAT
>Myotis_myotis
TTTTTTTT------------AAAAGGGCTTTAACAACAAAA-CTTTCCAATACCAATG----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------AAGTGAT------AAAATA---AATAAAAG-----ACTTTTAGGCCACCTTCTAAGAGAACTTT-TT-----
--------------------------------------------------------------------------------
-----------------------------------------------TTGCTGATTTTTGAAAGACCTATT
>Rousettus_aegyptiacus
TTTTTTTTTT------GAGGAAAAAGGTTCTAACGACAAAAACTTGCCAACACCAGTG----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------AAGCGAT------AACATA---AATAAAAG-----TATTTTAGGCCACCTTGTAGAAGAACATTTTT-----
--------------------------------------------------------------------------------
-----------------------------------------------TGACTGACTTTTGAAAGACCCACT
>Condylura_cristata
TCTTTTT-----------AAAAAGGAGCTCTAGCAAAAAAAAGTTTCCAACTCGAATC----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------AAAATAT---AAAGAAAAA---AAT--AAGAAAACATAGTTGAATCACCTTCAGAAAAAAGTA--TT-----
--------------------------------------------------------------------------------
-----------------------------------------------GTGCTGACATTTGAAAATCCCATT
>Erinaceus_europaeus
TAC-----------------AAAATGCCTCTAGCAACAAGAAATTTCTGGTTCTAATC----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------AAGAGAT------AAAATA---AATACAAG-----GTATTTGGATCACCTTC--TATAAATCTTTTTTTTTG
AGGATTAAAAGTATTTATTTATTAATGAGAAAGAAATGAGAAGAGAGAATCAATACATTATTGAACTTGTGACCTCAAAT
TTTGAGAATCCAACTCTTTATCTACTGCATTACCTCCTTGGTTACTCTTGTGGATTTATGAAAGACAGAAT
>Homo_sapiens
TACT----------GAGAAAAAAAGGGCAC-AGCAACAAAAATGTTCTAGTCCCAATC----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------AAGCGAT--AAACAAAATA---AACAAAAG-----ATATTCAAATCAACTTT--AAAGAACCTGTTT-----
--------------------------------------------------------------------------------
-----------------------------------------------TTGCTGAGTTTTGGAAGAAACATT



Horse167_LINE

>L1MA9
----------------------------------------------------------------------------TTTA
TTGAGGTATAATTGACAAATAAAAATTGTATATA---TTTAAGGTGTACAACGTGATGTTTTGATAT--------ACGTA
TACATTGTGAAATGATTACCACAA-TCAAGCTAATTAACATATCCATCACCTCACATAGTTACCATT--TTTTTGTGTGT
GGTGAGAACACTTAAGATCTACTC-TCTTAGCAAATTTCAAGTATACAATACAGTATTATTAACTATAGTCACCATGCTG
TACATTAGATCTCCAGAACTTATTCATCCTGCATAACTGAAACTTTGTACCCTTTGACCAACATCTCCCCATTTCCCCCA
CCCCCCA-------GCCCCTGGCAACCACCAT----TCTACTCTCTGCTTCTATGAGTTTGACTTTTTT-----------
----------------------------------------------------------------
>Canis_familiaris
ATGGAATTAGTTACATATTTTCATATCTGCTTTCAAAATAGTATTGACTA---T-ACTTT-TGAACTCTTT-----TTTG
TGGAGGTATAAACAACATGT-AATTTTATATTAG---TTTCAGGTGTACAATGGAATGTTTTGATAT--------TTGTA
TATATTGTGAAATGATTCCCATGG-TAAGTCTAG------------TCACTATGCCAAGGAACAATT--CTTTTTCTCAT
GATGAGAACTTATAAG-TCAATTC-TCTTGTCGGCCTTCAAATATATAATACGGTATTGTTAGCTGTAGTCACAACTCTG
TATATTACATCCCCAGGACTTATTTATTTTA--TAACTGTAAGCTCGTACCTTTTGAC------CACCC-ATTTATCCAA
TCCTCCACCCTC-TGCCTCTGGCAACCATTAT----TCTGTTCTCTGTATCTCTGAGTGTGGTT--------TTATTTTC
TAAAGTCTTC---AGTCCCGAAGAATTTCTTGTGTTTTGCCCC-ATGAGCTTAGATGACCTTTG
>Felis_catus
ATGGAATCAATTACACAATTTCACACCTGCCTTCAAACTAGCATTGACTA---T-ATTTTTTGAAATCCCT---CTTTTA
TGGAGGCATAATTGACGTGT-AACATTATATTTGTTATTTCAAATGTACACCACCATGATTTGATAC--------TGTTA
TATATTATGAAATGGTTCCCACCA-TAAGTCTAG------------GCTCCATGCTTAGGTATAATT---TTTTCCTTGT
GGTGAGAATTTTTAATATCTACTC-TCCTGGCAACTTTCAAATAGACAATGCAGTATTGTTGACTACAGTCACCATGCTA
TATATTACACCCCCAAGACTTATTTATTTTA--GAACCAGAAGTTTGTACCTTTTGACCCACTTCACCC-ATTTCCCCAA
TCCTTCAACCACATGCCTCTGGCAACTACCAACCATTCTGTCCTCTGAATCTACGAGTTTGGTT--------TTATTTTC
TGAAGTCTTC---AGTCTTGAAGAATTTCTTGTGTTTTGACCCAAAGGGTTTAGACGCCCTTTG
>Sus_scrofa
ATGGAATCAGTCACATGATTTTACATTTTCCTTCAAACTAAAGTTGATTA---T-ATATTCCGAAGCCTGT-----TTAA
TTGAGGTACAATTGACATAT------TGCA-------TTCCAGGTATACAACATTGTGATTCAATAT--------TAGTG
AATATTGCAAAATGAACACCACAG-TAAGTCTAATTAAC--ACACATCATCATGTGCATTTACAGCTATTTTTTGCTTGC
CATGAAAAC--TTAGGATTGATTC-TCTTAGCAACATTCAGATATGCACAACCGTATTAATA---------ACAATGCTG
TGTATTGCATCCCCAGGACTTAATTATTTTC--TAACTGGAGGCTTGTATTTTTCGATCCTCTTCACCC-CTTTTGCTGA
GCCCCCACCCCTCCACCTTTGGCAACTGCCAA----TCTTGTCTCTGTACCTATGCGTTTGGCT--------TCATTTTC
TGAAGACTTT---GGTCCCAAAGAATTTCTTGTGTTTTGCCCT-ATGAATTTAAATTGTCTCTG
>Bos_taurus
ATGGAATCAGGCACATGATTTTCTATTTGCTTTCAAACTAGTATTGATTA---T-ATTTGCTGAAGCATTT-----TTTA
TTGAGGTATGATTGACATGT-AACAGTATATTAG---TTCCAGGTGTACAGCATAATGATCCAATAT--------TTATG
TATATTGCAAAATGATCACCACTGTTAAGTCTGGTTAAC--ATCAATCACCATAGAGATTTATACTT-GTTTTTGCTTGT
GATAAGGACTTTTACTATTGACTC-TCTTAGCAACTTCCAAATGTGCTCTACAGTATTATTAATTACAGTCACCATGCTG
TACATTGCATCCCCATGATTTACTTATTTTA--TAACTGGAAGTTTTTATATTTTGACCTGCTTCACCC-ATTTTGTTCA
TCCCCCACACCTCTGCCTTTGGCAGCTGCCGA----TCTCTT-----TATCTATGAGTTTGGTT--------TCATTTTC
TGAAGTTTTT---AGTCCCAAAGAATTTCTTGCATTTTGCCCCCATGAGTTTAGATTGTCTATG
>Equus_caballus
ATGGAATCAGTCACGTGATTTTCTATTTGCCTTCGAAGTAGTATTGATTA---T-ATTGCCTGAAGTCTTT---C-TTCA
CTGAGATATAATTGACATAT-AACATTATATTAG---TTTCAGGTGTACAATATAACGATTCAAGTTTTTTTATATTATA
TATATTGTGAAATGATCACCACAA-TAAGTCTAGTTAAC--ATCTGTCACCACACACAGTTACAAAG-TTGTTTTCCTGT
GGTGATAACTTTTAAGATCTACTC-TTTTAGCAACTTACAAACAGGAAATACAGTATTATTAACTATAGTCACCATGATG
TACATTACGTCCCCATGACTTATTTATTTTG--TAACTAGAAGTTTGTACCTTTTGGCCCCCTTCACCC-ATTTTGCCCA
TCCCCCACTACCCCACCCCTGGCAATCACCAG----TGTGTTCTCTGTATCTATGAACTTGGTT--------TTATTTTC
TGAAGTCTTT---GGTCCTGAAGAATTTCTTGTGTTTTGACCC-AAGATTTTAGATTATCTCTG
>Ceratotherium_simum
ATGGAATCAGTCACATGATTTTATATTTGCTTTCAAAGTAGTATTGATTA---T-ATTTCCTGAAGTCTTT---C-TTTA
TTGAGATATAATTGACACAT------TATATCGG---TTTCAGGTATACAACATAACGATTCAAGGT--------TTGTA
TGTATTGTGAAATGAT---CACAG-TAAGTCTAGTTAAC--ATCTGTCACCACACATAGTTGCAAAT-TTTTTTTCTTGT
GATGACAACTTTTAAGGTCTACTCTTTTTAGCAACCTACAAATATGCAATACAGTGTTGTTAACTATAGCCACCATGCTG
TACATTGCATCCCC-TGATTTATTTATTTTG--TAACTAAAAGTTTGCACCTTTTGACCCTCTTCACCC-ATTTTGCCCA
CCCCCCACTCCC-CACCTCTGGCAACTATCAA----TCTGTTTTCTGTATCTATGAACTTGGTT--------TTATCTTC
TGAAGTCTTT---AGTCCTGAAGAATTTCTTGTGTTTTGCCCC-ATGAGTTTAGATGATCTCTG
>Myotis_myotis
GTGAAATGAGTCACTTCATTTTATATTTGCTTTT------GTACTGA-TA---TTATTTCCTAAAGTTTTT---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------GGTCCTGAATAATTTCTTGTGTTTTGCCCC-CTGAGTTTAGATGATCTATG
>Pteropus_vampyrus
CTGAAATAAGTCACATGATTTTATATTTGCTTTT------GTATTGATCA---TTATTTTCTGAAGTCTTT---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------AGCTGTGAATAATTTCTTGTGTTTTGCCCT-ACAGGTTTAGATTATCTCTG
>Condylura_cristata
TTGGAATCAGTTACCTTATTTTATATTCACTTTCAAAC-AGTATTAATTA---TTATTTTCTACA--TTTT---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------AGACCTGAA-ATTTTCTTGTGTTTTGTCTT-ATATGATTACATG-TC--TG
>Scalopus_aquaticus
TTGGAATCAGTTATCTGATTTTATAAT-ACTTTCAAAC-AGCATTGATTA---TTATTTTCTAAAGTCTTT---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------AGAGCTAAA-ATTTTCTTGTGTTTTGCCTT-ATGAGAGTAGATA-TCTTTG
>Homo_sapiens
ATGGACTCA------TGATTTTATATGTACTTTCAAACTAGCATTCATTG---TTATTTTCGGAAGTCTTT---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------AGTCCTCAATAATTTATTGTGTTTTGCCCC-ATGGGTTTAGATTATCTTTG



Horse174_LINE

>L1MB8_3END
----------------------------------------------------------------------------TTTT
TTAATAGCTTTATTGAGATATAATTCACATACCATACAATTCACCCATTTAAAGTGTACAATTCAATGGTTTTTAGTATA
TTCACAGAGTTGTGCAACCATCACCACAATC-ATTTTAGAACATTTTCATCACCCCCAAAAGAAACCCC-GTACCCATTA
GCAGTCACT--CCCCATTCCCCCTTC----CCCCCAGCCCCAGGCAACCA------------------------------
--------------------------------------------
>Canis_familiaris
AATCTGTCCCAATACAAATATGTGGTCT---TATTATCTAAGACAGACTTACT---ACCATCTATTTCTATC----CTTG
ACAATAGCTTCATTGTGCCATAATTT-CATACTATACAATTCATCAATTTAAACTGCACCACTCAATGGTTTTTAGTATA
TTCAC--TGTTACATATCCATCA-CACAATCAATTTTAGAACATTTTCATCACCCCAAAAAGAAATCCA-AGAACCATTA
GCAGTTATT--CCCTGTTGCTCCACAAAT-CCCTCAAACCTA-----------GGCATCTA-TTTCTTTT---GTAACTT
CTTATTCCCCTGCTGAGCTCATGACTGTGCTGCAGACA-ATATA
>Felis_catus
AATCTGTCCCAATCCAAATATGTGGTCT---CATTATCTAAGTCAGGCTTACT---GCAACCTATTTCTACT----TTTT
ATAACAGCTTTATTGTGCCATAATTTATAAACTATACAACTTTCCAATTTAAACTGTATAGTTCAGTGGTTTTTAGTATA
TTCAC--TGTTATACACCCATCACCACAATCAGTTTTAGAACATTTTCATCACCCCAAAAGGAAACCCAGATAACCATTA
GCAATCATT--CCCCGTTTCTACACAAAT-CCCCCAAACCTA-----------GCCATCTA-TTTCTTTA---ATGAC-T
CTTACTCTCCTGCAGAGCTAGTCACTATGCTGCAAATA-ATATA
>Manis_javanica
AATCCATCCAAATCCAAAAATGAGGTCTTACTACTACCAAAGACATGCTCAAT---GCCATCTATTTCATTT---TTTAT
ATAATAGCTTTATTGTGATATAACTCACATACTGTGCAATTCACCAATTTAAACTGGACAAACAATGGTTTTTAGTTATA
GCCTCAGAGTTATGCATCCATCACTACAATCATTTTTAGAACATTTTCGTCACCCCATAAAGAAACCTC-ATAACCATTA
GCAGCCATT--CCCCATTTCTACCCAAAC--CCCCAAACTTG-----------GCCATCTA-TTTCTTTT---ATGACTT
CTTTT------------------ACTATGCTGCATATATATATA
>Equus_caballus
AATCTGTCCCAACCCAAAAATGTGGTCT---TACTATCTAAGAAAGGGTCAAT---GTCATCTATTTCTTTT---TCTTT
ATAAAAGCTTTATTGTGACGTAATTCACATACCATACAATTCACCAATTTAAACTGTACAATTCAACAGTTTTTAGTACA
TTCACAGAGTTTTGCATCCATCACCACAATCAATTTTAGAACATTTTCATTACCCCAAAAAGAAACCTC-ATAACCGTTA
GCAGTCATTCCCCCCATTTCTATCCAAAC-CCCCCAAACTTA-----------GCCATCTA-TTTCTTTT---TTGACTT
CTTGTTCTCCTACAGAGCTAATCACTACGCTGACAACA-ATATA
>Ceratotherium_simum
AATCTGTCCCAATCCAAAAATGTGGTCT---TACTATCTCAGACAAGCTCGAT---GCCATCTATTTCCTTT---TTTTT
ATAAAAGCTTTATTGTGACATAATTCACATACTACATAATTCACCAATTTAAACTGTACAGTTCAACGGTTCTTAGTATA
TTCACAGAGTTTTGTGTCCATCACCACAATCAATTTTAGAACATTTTCATCACCCTAAAAAGAAACCTC-ATAACCATTA
GCAGTCATT--CTCCACTTCTGTCCAAAC-CCCCCAAACTTA-----------ACCATCTA-TTTCTCTT---GTGACTT
CTTGTTCTCCTACAGAGCTAATCACTATGCTGCAAACA-ATATA
>Condylura_cristata
ACT-TAGCCCAATACAAACATGTGCTCT---TATTGTGTAAGATAAACTCAAT---GTCATCTA----TATT----TTTT
ATAACAACCTCATTGAGACACAACTCACATATTATAGAATT--TCAATTTAAACTAAACAAA--------GTTTAGTATC
TTCAG--AGTTATGCATCAAGCACCATAATCAATTTCAGAACATTTTCATCACTCTAAAAAGAAACCTC-CTGGCCATGA
ATATTAACT--TCCCATTT-TACCCAAAC-CTGCCAAACTTA-----------GCCAACTA-TTTCTTCT---GTAATTT
-----TCTTGAGCAGAACTTACCATTATGCTATATATA-AAATA
>Erinaceus_europaeus
AATCTT------TTCAAAAATGTGACCT---GACTAGCTAAGCTAGACTAAAG---GTTATATTTCTTCCTT---TTCTT
ATAACAGCTTTGTGAAGATATG-------------AAATTTCACCAACTGAAATTGTGCAACCAAATGGTTTTTCATAAA
------------AGCCTTTACCACCATGATCCACTTGAGAGCATTTTTATCCTCCCCCAAGGTAATCCC-ATAGTCACTA
ACATCCATT--CCCTCTTTCTACCCAAGCTTCCCCAGAATGA-----------ACCA-CTG-TTTCTTTA---GTAATTT
ATGTTTCCCCTGCAGACTTCATCACTGTACAGTAAAT--AAACA
>Sus_scrofa
GATCTGTCCTGATTCAAAAATGTAGTCT---TACTCTCTAACCCAGCATCAAG---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------GTCATCTA-TTTCTTTG---GGGACTT
CTTATTTTCCTGCAGAGCTAATCACTATGCTACCAATA-ATATA
>Tursiops_truncatus
AGTCTGTCCCGATCCAAAAATGTGGTCT---TGCTATCCAACCCAGGTTCAAT---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------GTCATCTATTTTCTTTT---GTGACTT
---ATTTTCCTGCAGAACTCATCACTATGCTGCAAGTA-ATATA
>Myotis_myotis
------TCCCCATCCAAAAATGTTGTTT---TACTACCTAAGACAGATTCCAT---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------GCCATCTA-TTTCTTTT---GTGACTT
CTTATTTTCTGGCAGAGCTT-------TGCCACAAATC-ACATA
>Rousettus_aegyptiacus
AGTCTGTCCCAGTCCAAAAATGT----------------------GGTTCAAT---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------GCCATCTA-ATTCTTTT---ACGACTT
CTTATTTTCTTGCAAAGCCAATCACTATGCTGCAAATA-ATATA
>Homo_sapiens
AACCTGCCCCAATCCATACATGTG-CCT---TGCTATATAAGACAGTTCCAAT---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------GCCCTCTA-TTTCTTTT---GTTACTT
CCTACTACTCTGCAGAGCTAATCATTCTCCTGCAAATA-ATATA



Horse175_LINE

>L1MAB_EC
-------------------------------------------------------------------------ACACCTT
AAACATA---ATACAATGTTATATGTCAATTATATCTCAATAAAACTGAAAAAAAAAAA---------------------
---------------------------------------------------------
>Canis_familiaris
CAAAACTGTAC-TTTCATCTTTACTTTGCTGCTGGATGAAATCGTT--ATATT---AGGAATTATTTTTA---------T
AAAT-TT---ATGCAATGCTATATGTCAGTTACATCCCAATAAAACTGAAAAAAAA------TTAAA---AAGAATTATT
GTCA---GATAATAGTATAAAACCTTTAGGGCCAGAATCTTAGCATTTGTATTTCTT
>Felis_catus
CAAAACTGTAC-TTTCATCCT------GTTGCTGGATGAAATCGTT--ATATT---AAGAATTATTTTTA---------T
AAAC-TC---GTACAGTGCTGAATGTCAATTACATCTCAATAAAACTGTAAAAAAAAT----TTAAA---AAGAATTATT
TTCA---GATTACAGTATAAAACCATTAGGTCCAGAATCGTAGCATTTACATTTCTT
>Manis_pentadactyla
AAAAACTGTCC-TTTCATCCTTACTTGGCTGCTGGATGAAACAGTTTCATATT---AAGAATTATGTTCA---------T
AAAC-TT---ATAAAATGCTGTATGTCAATTACATCGCAACGAAATTGGAAAAAATAAA---TAAAA---AAGTATTATT
TTCA---GATTACAGTATAAAACCTTCAAGGCCAGAATCTTAGCATTTGTATTTCCT
>Equus_caballus
TGAAATTGTAC-TTCCATGCTTACTTTGCAGCTGAATGACATAGTTTCCTAAT---AAGTATTATTTCCA---------T
AGAC-TT---ATACAGTGCTTTATGTCAATTACATCTCAATAAAACTGGGGG----------AAAAA---GAATGGAACT
TTCG---GATTATATTATAAAACCTTTAAGGCCAGG-TCTTAGCATTTGTATTTCTT
>Ceratotherium_simum
CAAAACTGTAT-TTCCATCCTTACTTTGCTGCTGGATGAAATAGTTTCATATT---AAGAATTATGTTTA---------T
AAAC-TT---ATACAGTGCTGTATGTCAATTACATCTCAATAAAACTAGAAAAAAAGAATGGAAAAA---AAGAATTATT
TTCA---GATTACATTATAAAACCTTTAAGGCCAGAATCTTAGCATTTGTATTTATT
>Condylura_cristata
CAATGCATAAC-CTACATCTT----TTGCTGTTAAGTAAAATAGTCCCATATT---AAGAAATAATTTTA---------T
GAAC-TT---ATACAATGTTATATATCCACTGAATCTCAGGAAATTGAAAAC-------------AA---AATAATTATT
TTCA---GATTATACTATCAAAGCTTGAAGTTCAAAAATTT-GAATATGTATTTCTT
>Solenodon_paradoxus
CAAAATTGTACGTTCTATTTTTGCCTTTCTGCTAGAGGAAATACTTTCATAAT---AA---TT-TTTGTA---------A
AAAAATTGTTATACAGTGTTATATGTTAATTACATCTCTATGAAATAGAAATAAAATAA---TTAAA---AAAAA----T
TTCA---GGTTATACTGCAAAATCTGTAAG-CCAGATTCTTAGCATACATATTTATT
>Sus_scrofa
CAAAACTGTAT-TTCCATCCTTGATTTGCTGGTGGATAAAATAGTGTCATATT---AAGAATTA-TTTCA----------
--------------------------------------------------------------------------------
-------GATTATGCTAAAAAATCTTTAAAGCCTCACCCTTAGCATTTATATTTATT
>Tursiops_truncatus
CAAAAC------TTTTATCCTTGCTTTGCTGCTAGATAAAATAGCATCATATT---AAGAATTATTTTCA----------
--------------------------------------------------------------------------------
-------GATTATATTACAAAATCTTTAAAGGCTGAATCTTAGCATTTGTATTTCTT
>Myotis_myotis
CAAAACTATGT-TTTCATCTT----TTGCTTGTGGATGAAGTAGTTTTATATT---AAGAATTATTTTTT----------
--------------------------------------------------------------------------------
-------GATTACCCTACAAAACATTTA-------------------------TCTA
>Rousettus_aegyptiacus
CAAAACTATAC-T---ATACTTCTATCTTTACTGGATGAAATAGTTTTATATT---AATAATTACTTTCA----------
--------------------------------------------------------------------------------
-------GATTTCACTATAAATCCTTTAATGCTCAAATTTTAGCATTTGTATTTCCT
>Homo_sapiens
CAAAACTGTAC-TT-CACCTTTATTTTATTGCTGGATGAAATTTT-TTGTTTT---CAGAATTATTTTCA----------
--------------------------------------------------------------------------------
-------GACAATACTGT-AAATTTTTATGGCCAGAATCTTAGCATTTGCATTTTTT



Horse181_LINE

>L1MB2_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------AAGGTGGAAGCAACCCAAGTGTCCATCGACGGATGAATGGATAAACAAAATG
TGG---TATATACATACAATGGAATATTATTCAGCCTTAAAAAGGAAGGAAATCCTGNCACATGCTACAACATGGATG--
-AACCTTGAGGACATTATGCTAAGTGAAATAAGCCAGTCACAAAAAGACAAATACTGTATGATTCCACTTATATGAGGTA
CCTAGAGTAGTCAAATTCATAGAGACAGAAAGTAGAATGGTGGTTGCCAGGGGCTGGGGGGAGGGGGAAATGGGGAGTTG
TTGTTTAATGGGTATA-GAGTTTCAGTTTTGCAAGATGAAAAAGTTCTGGAGATCGGTTGCACAACAATGTGAATATACT
TAACACTACTGAACTGTACACTTAAAAATGGTTAAGATGGTAAATTTTATGTTATGTGTNTTTTACCACAATTAAAAAAA
--------------------------------------------------------------------------------
-------------------------------------
>Equus_caballus
TTTCTTAAACACAGTTGGCCTCTGCCTGCCTAGTTGTCAGAGA---GGCT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----GTGATG---AAAATGGCTTCC-------------CAAACTAAACGTGCATCAATGGATGAATGGATAAAC-AAATG
TGG---TACATACACACAACAGAGTATTAGTCAGCCTT-AGAAGGAAGGCAGTCCTGTCACGTGCTACAAAATAGATG--
-AA-CTGGAGGACACTGTGCTAAGTGAAATAAACTGGACACAGAAAGAGAAATACTATATGATTTCACTTATATGAAGTA
CCTAAAGTGGTCAGATTCATAG--ACAGAAAGCAGAACGGTGGCTGCCAGCAGTGGGCAGAGAGGGA----GAGGGGTTT
TTGTTTAGTGGGTACA-GAATTTCAGGTTTGCTAGATG---AAGTTCTGGAGAGCTGTTCCACAACAATGCGAATATACT
TAACACTGCTGAACTATGCACTTGAAAGTGGTTAAGATGG-AAATTTCATGTTATGTGGTTTTTACTGCAATTAAATAAA
--AATAGAATGAGGCTGAGCAAGGAA---------ATAAAGGCTCCC---CCCTTCCTCAGGAA--------AGCACCCA
GGCAACCAACAGCACCCCAGAGACA-CAGGCAGCTCT
>Tapirus_indicus
TTGTTTAAACATGGTTGACCTCTGTCTGCCTAGTTGTCAGAGA---GGCT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----GTGATG---AAAATGGCTTCC-------------CAAACTAAATGTCCATCAATGGATGAACGGATAAAC-AAATG
TGG---TATATACACACAGTGAAGTATTATTCAGCCTT-AGAAGGAAGGAAATCCTGTCACATGCTGCAAAATATATG--
-AACCTTGAGGACATTATGCTAAGTGAAATAAGCTGGACACAAAAAGAAAACTTCTGTGTGATTCCACTTATATGAAGTA
CTTAAAGTAGTCAGATTCATAGAAACAGAAAATAGAATGGTGGTTACCAGCTGCAGGCAGCA---------GGGGAGTTT
TTGTTTCATGGGTAGA-GAGTTTCAGATTTGCAAGATG-AAAAGTTCTGGAGATCTGTTTCACAACAACGCGAATATACT
TAGGACTACCGAACTCTACACTTAAAAATGGTT--GACAGCCAATTTTATGTTATGTGGTTTTGACTACAATAAAAAAAA
AAAATGGAATGAGGTTGTGCAAAAAAAAGAAA---CAAAAGGCTCCC---ACCTTCCTCAGGAATGTCCC--AGCACCCA
GGCAACCAACAGCGCCCCTGAGATG-CAGGCAGCTCT
>Myotis_myotis
CTTCTTCAACAGAGTTGGCTTCTGTCTGCCTAGTTGTCAGAGA---GGCT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----GCGATG---AAA-TG-CTTCC-------------CAAACTGAATGTCCATCGATGGAGGAATGGATAAACTAAATG
TGC---CATTTACATACAACGGGATATAATGTAGCCTT-AGAAGGAAGGAAATCCTGTTACATGCTAAAACATGGATG--
-AGCCTTGAGGACATTATGCTAAGTGAAAGAAACC---------------------------------------------
-----AGTGTCTGTGT-----------GGGAGTAGGAAGG-------------------------------AGAGAATTT
TTGTTTAATGTTTATA-GAATTTCCTATTTGCAACATGAAAAATTTTTGGAGATGTGTTTCGCAACAGTGTGACTATACC
TCATATGACTGGACTATATACTTA-AAATAGTTAAGATGGTAAATTTTATGTCATACAATTTT---TACAATTAAAA---
--ACTAAAATGAGGTTGAACCCCCCAA--------AAAATGGTCCCC---ACCTTTCTCAGAAATGTCAC-AAGCACCCA
GACAACCAACAGTGCCCCTGAGGCATTACCCAGTTCT
>Rhinolophus_ferrumequinum
TTTCTTCAACAGAGTTGGCCTCTGCCTGCCTAGTTGTCAGAGA---GGCT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----ATGATA---AAAATGGCTTCC-------------CAAACTAAATGTCCATCAATGTAGGAATGGATAAACAAAATA
TGGGACCATATACATACAATGGAATATAATTTAGCCTT-AGAAGGAAGGAAATCCTATTACATGCTACAACATAGATGAA
TAACCTTGAGGACGATATGCTAAGTGAAATAAGCC---------------------------------------------
-----AGTGGCTAGGT---------------GTGAGTGGGTGG----------------------------AGAGAATTT
TTATTTAATGAATGCAGGAGTTTCAGATTAGCAACATG-AAAAATTCTGGAGATCTGTTTCAAAGCAATGTGAATATACT
TAATATTACTGAACTGTACA-TTA-AAATGGTTAAGATGGTAAATTT-ACGTTATGTGGTTTTTACCACAATGAAGA---
--AATGGAATGAGGTTGAGCCAAAAAAAAAAA---AAAATGATTCCC---ACCTTGCTCAGGAGTGTCAC-AAGCACCCA
TACAACCAACAG--------AGACA-CAGGAAGCTCT
>Canis_familiaris
TTTCTTAAACCTAGCTGGCCTCTGCCTCCTTTGTTGTCAGAGG---GACT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----CTAACG----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------AAAATGCCCACC---GCCTTCCTCAGGAACATAAC-AAGCACCCA
GGC----------------------------AGCCCT
>Felis_catus
TTTCTTAAACATAGTTAGCCTCTGCTGGCTT---------------AGTA------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----GTGATG----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------AGAATGGCTCCC---ACCTTCTTCAGGAATGTTAC-AAACACCCA
GGCAACCAACAGAGTTCCTGAGATA-CAGGCAGCTCT
>Manis_pentadactyla
ATTCT--AAAATAGTCGCCCTTTGCCCGCCTCACCGTCAAAGA---GGCT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----GTGATG----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------AAAATGGCTCCC---ATCTTCCTTAGAAATGTGAC-GAGCATCCA
GACGAGTTGCAG---CCCCGAGACA-CGGGCGGCTCG
>Sus_scrofa
TTTCTTAAACATAGCTGGCCTCTGCCTCCCTGACTGTCAGAGA---GGCT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----GTGATG----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------AAAACAGCCCCC---ACCTTCCTCAGGAATGTTAC-AAGCACCCA
GGCAACTGACGATGCCCCTGAGA---CCAGCAGCTCT
>Tursiops_truncatus
TTTCTTAAACGGAGTTGGCCTCTGCCTGCCTCGTTGTCAGGGA---GGCT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----GTGATG----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------AAAAGAGCCCCC---ATCTTCTGGAGGAACGTTAC-AAGCACCCA
GGCGATCGGCCGTGCACCCGAGAC--CCAGCAGCCCT
>Condylura_cristata
TTT-------------GGCCTCTGCCCAGTTGCCTGTCAGAAG---GGTTGTGAGAATATATAACAAATGGAATTCTATT
CAACTATTTAAAAAGATGAAATAGTACATTTTGGGATGAAATAGGTGCACCTTGAGGTGATTATACTAAGTGAAATTAGT
CACAAAGACAGATATTGATGGTTTTACATATCTGTACAATATAAATAACCAAATATATACATGTATATTTGGTTTTAATA
TCTTTTCTTTTAATATGTTGGCAAAGTACAACAACAAAATTAGGCTTAATGAAATATATGCTGGCTGCCAGAAGGGACGG
GGGAGGAAGCAGGGGCCGGAGGAAGGCAGGGGCCAGGGCACTGACTGAGGATGCTTGGTAGAGGGTGAGTGACGCCTGTG
CACTGATGGAGGAGTCAAAATGTAAACACAAAGTTATATGGACATGTGAATGGCTGACAGAGTGAAGCAAAAAATGCAGG
GGTGGTGAGG----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------AAAATGGCTTCC---ACC-CCCTCAGGAATGGTAC-AAGCATCCA
GGCAGCCAACA-----------------------CCT
>Erinaceus_europaeus
TTTCTTTAATAGAAGTGGCCTTTGTTCAGCTACTTGGCAGAGA---AGTT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----GTGAGA----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------AAAATGGCACTT---ACCACCCTCAGGAATGTTTCTTAGTACCCA
GGCAGCCAACAG-----------------------CT
>Homo_sapiens
CTTCTTAAACACAGTTGGCCTCTACCTGCCTGGATGTCAGAAAGGCGGCT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----GTGATG----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------AAAATGGCTTCC---ACCTTCATCAAGGACATAAC-AAGCA-CCA
GGCAACCAGCAGTGCCCAAGAGAGA-GAGGCGGCTCT



Horse187_LINE

>L1_Carn7
--------------------------------------------------------------------------------
----------ATGGTGACAGATGGTAACTAGACTTATTGTGGTGATCACTTCACA-------------------------
-----ATGTATACAAATGT-CGAATCACTATGTTGTACACCTGAAACTAATATAACATTGTATGTCAATTATACTCAAAT
AAAAAAA-------------------------------------------------------------------------
----------------
>Equus_caballus
CTTATT-AGAACAGACATTGTCCCATCCTCTTT---CTTCTTTGTTATTCCCAACAACTATGAG--TTTTT---ACAAAT
GAAGACC------------CATGTTAACTATACTTATGGTGCTGATCATTTCACT-------------------------
-------AGATACCTAGTC-TGGATCATTATGTTGTACATCTGTAACTAATTTAATGTTATATGTCAATTACATCTCAAA
AACAA---------AAAAATAAGACCC---AGAGAAATG-----ACT---TGCTCAA----------CT--AGTGACTAG
TGGTGGAATTACAATT
>Ceratotherium_simum
TTTATT-AAAACAGACATTGTACCATCCCTTTT---CTTCTTTGCTATTCCCAATAACTATGAGA-CTTTT---ACAAAT
GAAGACC------------CTTGTTAAACAGATTTATGGTGGTGATCATCATATATACTTATGGTATATAGATATGATCT
GATATCTATATACATATAT-TGGATCATTATGTTGTACACTTGAAACTAATATAATGTTATATGTTAATTATATCTCA--
--------------AAAA-GAAGACCC---AGAGAAGTG-----ACT---TGCCCAAAACTATATTCCT--AGTAACTAT
TGATGGAATTACAATT
>Myotis_myotis
CTTATT----------------------------------------ATTACCAACAACTATGAGA-CTTTT---ACAAAT
GAAGACC------------TATGTTAACTAGACTTAATGTGGTGACCATTTCACA-------------------------
-------ATATATATGTTTATGGATCAGAATGTTGTATACTTGAAGCTAATATAATGTTATATGTCAATTACATCTCAAT
TAAA----------ACAAAT---ACCC---AGAGAAGTG-----ACT---TGCCCAAAGTCATATTCCT--AGTG-TGAG
TGCAGGAACCATCACT
>Rousettus_aegyptiacus
CTCATT-AAAACAGACATTGTACCATCTCCTTT---CTTCTTCATTATTACTAATAGTTACAAAA-CTTTT---ACAAAT
TATGACC------------CATGTTAACTAGACTTATTGCAATGGTCATTTCACA-------------------------
-----ATATATACATATAT-TGGATCATTATATTGTACATCTAAAGTTAAT---ATGTTATATGTCAGTTATATCTCAAG
AAAA----------AAAAAT---GCCT---AGAGAAGTG-----ACT---TTCCCAAAGCCATAGCTCT--AGTAACTGC
TGATGGGACTACAATT
>Condylura_cristata
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTACGAG---TTTT---ACAAAT
TAT--CA--------------------------------TGGTGATCATTTTGCA-------------------------
-----ATATATACACATGT-CAAATC---ATGTTATTTGCCTCAAACTAAT-----GTCATGTGTCAGTGATACCTCAAC
TGCCATCTCCC---CAAAAT---ACCC---AGAGAAATC-----ACT---TACCCCAAGCCATATTTTT--CACAATTAC
AGGTACAGCCACAATT
>Uropsilus_gracilis
TATAAAAAAAACAGACACCGTACAATCCTCTTTA---------------------AGCTCTGAGA-ATTTT---ACA---
--GGTAA-----------------------------TTGTGGTGATCATTTTATA-------------------------
-----ATGTATACACACAT-CAA-TCATCATGGTGTATGCATGAAACTAAT--------AGGTGTCAATTACATCTCATT
TAAAA---------AAAAAG---ACCC---AACACAGTG-----ACT---TGCTCAAAGTCAGGTTTCT--AATAACCAC
TAGTAGAACCACACTT
>Canis_familiaris
CTTACT-AGAACCCAGACCATACCATTCACTTTCTTCTTCG-GATTATTCCCAACAATGGTGAGA-CTTTT---GCAAAT
TAAGACC-------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------AGAGGAGTGAAGTAACT---CGCTCAAAGCCTTATTCCT--AGCACTTAG
AGGGTGAACCACAATT
>Ailuropoda_melanoleuca
CTTATT-AGAGCAGAGACAGTGCCATTCACTTTCTTCTTCTTGATTATTCCCAACAACTGTTAAGACTTTT---ATGAAT
TAACACC-------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------AGAGGAGTGAAGTAACT---AGCCCAAAACCATATACTCCTAGTAACTAG
TTGTGGAGCCATAATT
>Manis_pentadactyla
GTTACT-AAAATAGATATTGCACTGTTCACTTTCTTCTTCTTTAGTATTCCAAACAGCTATGAGA-CATTT---ACAAAT
TAGGTCC-------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------AGAGAGATGAAGTTACT---TGGCCAAAGCAGTGTTCCG--AGTA-----
---TGGGACCACAATT
>Sus_scrofa
ATTATT-TAAGCCAATATTATTCCATTCACTTTCTTCTTTATTATTATTCCCCCAAACTATGACA-TTTTT---ACAAAT
GAAGACC-------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------CATGAAGTT--GTCACT---TGTCCAAAGCCA----------------AG
TGTTGGTTCCACAGTT
>Bos_taurus
CTTATT-AAATCAGATAT------GTTCACTTT---CTTCTTTATTATTCCCAACAACGATAATA-TTTTT---ACAAAT
TAAGACT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------TGGGAAGTGAAATAACT---TGTTCAAATTCATATTTCT--AGTAACTAG
TGGTGGAACCACAATT
>Cavia_porcellus
CTT-TT-AAAGCAGAAAAC-TAAAAGCCACTTTATGCTGCTTTGTTATTCACAACAACCAAGATG-CATTT---ATAAGT
TAAAACC-------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------AGAAAAATGAGGTATCTATCTTGCTAAAGCTTTTTTCTA--ATGAAGTAG
TGAGAGAAGCGTGGTT



Horse233_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------TTCAGCCTTA
AAAAAGAAGGAAATCCTGCCATTTGTGACAACATGGATGAACCTGGAGGACATTATGCTAAGTGAAATAAGCCAGGCACA
GAAAGACAAATACTGCATGATCTCACTTATATGTGGAATCT---------------------------------------
-----------------------------------------
>L1MAB_EC
--------------------------------------------------------------------------------
-----------------TTTTTTTTTTTCAGTTTTATTGAGATA-----TAATTGACATATAACATTGTATTATGTTTAA
GGTGTACAACATAATGATTTGATATATGTATATATTGTGAAATGATTACCACAATGAAGTTAATTAA-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------
>Canis_familiaris
AGAGAATACGATTTCT-TCCATAACATGGAAGAAGA-ATG---TGTACTTGCTTC---CTTCACATGG------------
--------GATTTT------TTTTTAA---------TTGAAACA-----TATTTGACGTGTGACATCCTG-CACATTTAA
AGTGTACAACATGTGAACTTGATACATTTATGTACTGTAACGTGATTACCCTCTGGAAGA--------------------
-------AAGCTATCCTACCATTTGTGCAAACGTGGATAGACCTTGAGCATATGATGCTAAGTGAGATAAGTCAGCCAGA
AAAAGGCAAGTACTGTGGGA------------------------CCTCAGGTGGGATTTT---GCAGGTGCAAGGGG---
TGTGC-----TGGAGAGAGTGGCTGCTGGGAATGTGATCAG
>Felis_catus
AGGGAATAGGATTTTAGTCCCTAACATCTAAGAAGT-AGG---TGTACCTGGTTG---CCTCTTGTGGGCAGCACAAGAG
CCATATTTGAGCTC------CATTTAA---------TTGAGCCA-----TATTTGATATATAGCATTGCA-TACATTTAA
GGTATACAACATGTGGAGTTGATGCATTTATGTATTATAATGTGATTTCCCTGTGGAAGA--------------------
-------AGTCTATCCTGCCGTCTGAGAAAATGCGGATGGACCTTGAGCATAGGATGCTAAGAGAGAGAAGT----CAGA
AAAAGACAAGTACTGTGGGAA------------------------------------------GCAGG--------G---
TGTGC-----TGGTGAGACTGGCTGCTGGTAACGTGGTCGC
>Manis_javanica
AGGGAATAAGATTTCTGCCCCTAACTTGTAACAAT----------TACTTGCCCC---TCTCACATGG------------
--------GGTTCT------TTTTCTA---------TTGAAATG-----TATTGGGCAGAATACGTCGTG-TAAATTTAA
ATTGTA---CGTGTTAACCTGATAGATTTACATATTGTCACCTGATCGCTTCTCTGAGAAGAA-----------------
-------GGGCCATCCCGACATTTCTGACAGCATGTGTGGACCGTGAGCATATGATGCTAAGTAGGATACAT----CAGC
CAAAGAGAAATACTGTAGGC------------------------TCTCACGTGGGATTTT---GCAGATAGGAGGGT---
TGTGA-------------CAGATGGCCAGTAACCTGACCAG
>Sus_scrofa
AGGGAATAAGACTTTAGCCCTTCACTTGTAAGAATA-AGG---TGTACTTGCCTA---TCTCACAAGG------------
--------AATTTT-------TTTTAAATATACTTTTTGAAATA-----TGCATGATATGTAACATTGCA-TAAATTTAA
AGTGTACAGCATGTTAATTTGATACATTTATGTATTATAATATGATTGCTGCTGTGAGAAGGA-----------------
-------AGGACATCTTGCAATTTGTGACAACACAGATAGACCTTGAGCGCATTATGCTAAGTGAAATAAGGCAGACAGA
TAAAG-CAAGCACTGTATGA------------------------TCTCACATGGGATTTT---GAAGGTAGGGAGAG---
--TGA-----TGGAAAGACTGACT-CTGGTAACCTGATCAG
>Bos_taurus
AGGGAATAAGATTTTAGCTCCTAAGTTGTAAGGGTAGAGG---CAGGTACACATC---TCTCACAAGG------------
--------GATTTT-------TTAAAAATAAACTTTTTGAAATC-----TACATTATATATAACATTGTG-TAAATTTAA
GGTGTACACCAGGCTAGTTTGATACATTTTTGTGTTGTAATATTGCTGCCCTGTGATAGA--------------------
-------AGGACATCCTGC-ATTTGTGATAATATGGGTGGACCTTGAGCGCATTATGCTAAGTGAAATAAGT----CAGA
GGAAG-CAAGCAGAGTGTGA------------------------TCTCTGATGGGATTTT---GCAGGCAGGGGGAG---
TGTGA-----TGGAGAGACTGACTGCTGGTCACCTGGTCAG
>Equus_caballus
AGAGAATAAGATTTTGGCCCCTAACTTGTAAGAAGA-AAG---TGTACTTGCCTC---TCTCACATGG------------
--------GATGTT-------TTAAAA---------ATGAAATA-----TCTTTGACATATAATATTGTG-TAAATTTAA
GGTGTACAATATGTTAATTTAACACATTTATATATTGTAGTATGATTGCCACCAGGAGAA--------------------
-------AGGACATCCTGCCATTTGTAACAACTTGGATGGACCTTGAGCACATTGCGCTAAGTGAGATATGTCAGACAGA
GAAAGACAAGTACTGTATGA------------------------TCTCACATGGGATTTT---GCAGGTAGGAAGGG---
TGTGG-----TGGAGAGACTGGCTGCTGGTAACCTGATCAG
>Ceratotherium_simum
AGAGAATAAGATTTTAGCCCCTAACTTGTAAGAAGA-AGG---TATACTTGCCTC---TCTCACATGG------------
--------GATTTT-------TTTTAA---------TTGAAATA-----TATTTGACATAGAACATTGTG-TAAATTCAA
GGTATACAATACGTTAATTTAATACATTTATATATTGTAACATGATTGCTGCCATGAGAA--------------------
-------AGGACAT-GTGCCATTTGCGACGACATGGATGGACCTTGAGCACATTGTGCTAAG-GAGAGAAGTCAGACAGA
GAAAGACAAGTGCTGTATGA------------------------TCTCACATGGGATTTT---GCAGGTAGAAAGGG---
TGTGA-----TGGAGAGACTGGCTGCTGGTAACCCGATCAG
>Condylura_cristata
AGGGAGTAGGATGTTCTCCCCTATCTTGCAAGTAAA-AGG---CATCTTTGCCAC---CCTCCCATGG------------
--------GATTTA------TTTTTAA---------TTGAAGTATTTTTTTTTTTACATACAATGTTGTG-TAAAGT-GA
GGTGTGGAACATGCTAATTTGATCCACTCACATATCGTAATGTGA---------GAAAGA--------------------
-------TGGACCTCCTGCTGTTTGGGCTGTCAAAGCTTGCCCTTGAGTGCATTAGGCCAAGTGGGAATAAT----CAGA
AAGGGACAAGGGCTGTATGA------------------------TGTCATATGGGATTTT---ACAGGCAGGAGGAG---
CGTGC-----AGGAGAGACGGCCTGCTGGGAAACTGGTTAG
>Sorex_araneus
AGGGAGAAAACTGTTAGTGCCTTGCATGGAAGAAGGCAGTGTCCGCACTCGCC-----TTTCCCATGA------------
--------AATGTT---------TACA---------CTGAAATG-----TGTCTGACCCACTGTGCCATA-CAAATG-AA
GGAGTGCAACATGTTCATGGCAT-CACTTATATGTTGTAATACAAATGCCCACAAGAGGGGAGGGAGG------------
-------AGGTCGGCTGGC--TCCTGGGTGGCATGGAGGGTCCT-GAGCACATT-TTCTCACTAAGATTTAT----CAGA
CTAAGACAAATCCGGTCTGA------------------------GTTTGCGTGGGATTTT---GCAGGTAGGAAAGG---
--TGA-----AGGAGAGCTGGACCACTGGGAACCCCATCAG
>Myotis_myotis
AGGGAATAAGATTTCTGCTCCTAACTTGTAAGAAG----G---CACGCCTGCCTC-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TTTCACATGGGATTTT---GCAGGTAGGAGGGGTGA
TGTTT--------AGAGTCTGGCTGCTGCTAACCTGATTGG
>Rousettus_aegyptiacus
AAACGATAAGATATTAGTCCCTAATTTGTAAGAATA-AGG---TGTAATTGCCTC-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TCTCACAAGGAA-TTT---GCAGGTAGGAAGGGCAA
TATGGAGATATGGAGAGTCTAGCTGCTGGTAACCTTATCAG
>Heterocephalus_glaber
GGAGAGTGAGGTGTTAGTTCTCACTTTGCAGGGAACAAGG---TGTGCTTGCGTT-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TCCTATGTGGGA-TTT---GCAAGGCGGTGAGG---
CTTGT-----TGGAGAAACTTGCTCCCAGTAACCTGAGCAG



Horse255_LINE

>L1MAB_EC
--------------------------------------------------------------------------------
-----TTTTTTTTTTTCAGTTTTATTGAGATATAATTGACATATAACATTGTATTATGTTTAAGGTGTACAACATAATGA
TTTGATATATGTATATATTGTGAAATGATTA-------------------------------------------------
-----------------------------
>Sus_scrofa
TTTCTTTTGAATGT---TCTCACCCTTGGCGTTTCTGTCTTCACTGTGGCCTGAGGT---TT----GGGGGCCCTTTC--
----TAATTTTAATTTAAATTTTGTTGAGGTGTAATGGAC--CTAACATTCTATTG-GTTTCAGGTGTACAGCATAGTGA
TTCAATATTTGTGTA-A-----------------CTGGGGGGGCTTCTT---GAAA-AATCAAGCCAACACTCACTTGCA
GAAACAGT---TAGCC---TGTTGGACAG
>Tursiops_truncatus
TTTCTTTTGTATAT---TCTCATCCTTTGCTTTTCTGTCTTCTCTGTGGCCTGTGGT---TT---TGGGGGCCCTCTC--
-------TTTTAATTT---TTTTATTTAGGTATAATTGAC--ATAATGTTATATTG-GCTTCAGGTGTACAGCGTAGTGA
TTCAATATTTGTATA-A-----------------TTGGGGG-CCCTCTC---AAAAAAATCAAACCAATACTCACTTGGA
GAAGCAGTAAACAACC---TGTTGGACAG
>Equus_caballus
TTTA-TTTGTGCCTTCTTCTCATCGTTTGCTTTTCTGCTTTCTCTGCAGCCCCTGGT---TTGGGGGGGGGCCCTCTT--
-TTTAAATTTTATTTC---TTTTATTAAGATATAATTGAC----------ATATTA-GTTTCAAGTGTACAACATAATGA
TTCAATATTTGTGTA-A-----------------TTGGGAA-CCCTCTT---AAAA-AATCAAACCAACTCTCACTTGAA
GAGGCAGT---TAACC---TTTTAGACAT
>Ceratotherium_simum
TTTC-TTTGTATGTTGTTCTCAGTGTTTGCTTTTCTTCCTTCTCTATGGCCTACGGT---TT----GGGGGCCCCCTT--
-TTTAAATTTTATTTT---TTTTATTAAGGTATAATTGAT----------ATATTA-GTTTCAAGTGTATAGCATAATGA
TTCAATATTTATATA-A-----------------TTGGGAA-CCCTCTT---GAAA-AATCAAACCAACACTCACTTGGA
GAAGCAAT---TAACC---TGTTAGAGAT
>Canis_familiaris
TTTC-TTTCTATGT---TCTTATCCTTTGCTTTTCTGCCTTCTCCATGCCCTATGGT---TT----GGGAGCACTCTC--
--------------------------------------------------------------------------------
----------------------------------------------------AAAA-AATCAAACCAACCCTCCCATGGA
GAAGCAAT---TAACC---TGTTAGACAT
>Felis_catus
TTTC-TTTGTATGTTCCTCTCACCCTTTGCTTTTCTGCCTTCTCTATGCCCTGTGGT---TT----GGGATCTCTCTT--
--------------------------------------------------------------------------------
----------------------------------------------------AAAA-ACTCAGTCCAACCCTCACATGGA
GAAGCAGT---TAACC---TGTTAGGCAT
>Manis_pentadactyla
TTTC-TTTGTATGTTCTTCTC------TGCTTTTCTGCCTTCTCCATGGCCCATGAT---TT------GGGCCCTCTT--
--------------------------------------------------------------------------------
----------------------------------------------------AAAAAAAGAAAACCG----TCACTTGGA
GAAGCAGT---CAGCC---TCCTGGACAG
>Myotis_myotis
TATC-TTTGTACATTCTCCTCATCCTTTGCTTTCCTGCCTTCTCTGTGGCCTGTGGT---TT----GGGCATCTTCTT--
--------------------------------------------------------------------------------
----------------------------------------------------GAAA-AATCAAATCAACAGGCA----GG
GAAGCAGT--------------GGGACAT
>Rousettus_aegyptiacus
TTTC-TTTGTACGT---------CCTTTGCTTTTCTGCCTTCTCCATGATTGGTGGT---TA----GAGTGTCCTCTC--
--------------------------------------------------------------------------------
----------------------------------------------------GAAA-AATCAAACCAACACTCA----GA
GAAGCAAT---TAACT---TGTTGGACAT
>Condylura_cristata
TTTC-TTTGAATGTTC-CATCATTCCATCTTTCTCTGTC---TCCCTGGTCTGTGAT---TT----AGGTGCTCTCTT--
--------------------------------------------------------------------------------
----------------------------------------------------GAAA-AATCAAATCAGTACATGCTTGGA
AAAACAGT---TAACC---TGTTGAATAT
>Sorex_araneus
TCTC------ACGTTCTTC-CATCCTTTGTTGACCTGTCTTCTCTGTGCCTTGTGGT---TT----GGATGTCCTCTT--
--------------------------------------------------------------------------------
----------------------------------------------------AAAA---TCAAACCAACA--CACTCACA
GTAGTAGCTGCTGACCTGTTGTTGTACAT
>Homo_sapiens
TGCC-TTTGTAGGTTCCTTTCATCCTTTGCTTTTGTGCTTCCTATGTGGCCTGTGGT---TT----GGGAACCCTGTT--
--------------------------------------------------------------------------------
----------------------------------------------------GAAA-AATTAAACCAACACTCACTTGGA
GAAGCAAT---TAACC---TGTTTGACAT



Horse265_LINE

>L1MA9_3END
--------------------------------------------------------------------------GGTGGG
GGAAATGGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGA-TCTAATGTACAG
CATGGTGACTATAGTTAATAATACTGTATTGTATACTT------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------GAAATTTGCTA-AGAG---AGTAGATCTTAAGTGTTCTCACC----ACACACAA-----AAAAATGGTAAC
TATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTT
GT-ACACCTTAAATATATACAATTTTTATTT-GTCAATTATACCTCAATAAAGCTGGAAAAA------------------
--------------------------------------------------------------------------------
---------
>Canis_familiaris
CTGGCCTTTTATTTAAACTAGAAACTAATTTATTCTTAAAAATAGGGATT---AAAGAAA---CACCTAAG---------
----AAGGGT-GAAAGTGTTCAAAAGGTACAAATAACTAGTTAC--AAAGTAT-TAAAACCTGGGG--TGTAATATATAG
CATGGTGGTTATAGT---TAATACTATAATGTATATTT------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------GAAAGTTGCTA-AGAC-------AATCCTAACAGTTACCATC----ACAAGAA------AAAAAATATGTC
TATGTGTGGTGATGG--ATACTAACTACACTTGTTGTGATGACCATTTTGCAATATACACACATATTGTATTCTTCTGTT
GT-ATACCTGAAAC--AC------CTGAAAT-GTCAATTATATCTCAATTTAAAAATAACAAAA---------AAATC--
-----------TTACCT----AAT---CTTATGAATTT-GCTGCTAGTACTTTCTTT------AAGAATCAT------GA
AGCATGGAA
>Felis_catus
CTAGCATTGTATTTAAAGTGGAAACTAATTTATTCTTAAAAATAGAAAGT---AAAGAAA---CATCTAAG---------
----ATGGGT-GAAGATGGCCAAAAAGTACACATTTCCAGTTGT--AAAATAT-TAAATTCTGGGGC-CGTAAT-----G
CATGGTGATTACAGTTAATAATACTGTAATGTATATTT------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------GAAAGTTGCTA-AGACTGTCATAGGTCCTGACAATGCTCATC----ACAAGAA------AAAAATTATAAT
--TGTGTGGTGATGG--ATATTAACTACACTTATTGTGGTGACCGTTTTGCAATACACACACATATAGAATCCTTATGTT
GT-ACACTTGACACTAAT------TTTATTT-GTCAATTATATGTCAATTAAA--------------------AAACC--
-----------TTACCT----AAA---TGTATGAATTT-GCTTCTGGTACTTCCTTT------AAGAACCATTAGCACAA
AGTATGGAA
>Manis_pentadactyla
CTAGGATTTCATTTAAACTATAAACTTATTTATACGTAAAAATAGAAATT---CAGAAAA---CACT--AG---------
----ATGGGT-GCAAGTGGTTAA--------AACTTCCAGGTGT-------AAATAAGTTGGGGGGA-TGTATTGTACAG
-ATGGTGACTATAGTTAATAATACTGTAATATATATTT------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------GTAAGTTGCTC-AAAG---AGCAGGTCTTAAAAGTTCTCACCCAAGAAAAGAAAAATATAAAAAATATAAC
TATATGTGATGATGG--------ACTAGATTTATTGTAGTGATCATTTTGCAATATATACATATATTGAATCA------T
GT-ACATCTGA-GCTAATACAA-GCTTATAT-GTCAATTATTTCTCAATTAAAAACAACAACCAAAAAA----ACCCC--
-----------TCACCT----ATA---TTTATGAGTTT-GCTGCTGGTACTTTTTTT-----TAAGAGTCATTAGCACAA
AGCATAGAA
>Sus_scrofa
CTAGCATTTTATTTAAACTGAAAAC----TTATCCTTAAAAATAGAAATT---TAAAAAA---CACCTAAG---------
----ATGGGT-GAAGGGAATCAAAA-GTACAAACTTCTAGTTAT--AAAATACATAAATCCTCGGGA-TATAATATACAA
CATGGTGACTAT----AATAATACTATAATTTATGTTT------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------GAAAGTT-----AGAG---ATTAGATCTTAAAGGTTCTCATC----ATAAGA-------AAAAATTGTAGC
TCTATGTGGTGATGG-------------ATTTATTGTGGTGATCATTTTGCAATATACATATATATCGAATCAT--TGTA
GT-ATACCTGAAACTTATATAA-TACTATAT-TTTAATTATATCTCAATTTTTAAAA----------------ATCCC--
-----------CCACTA----AAG---TTTATGATTTT-GTTGCTGGTACTTTCCTT-----TGAGAAATGTT--CATAA
GGCCTGAAA
>Tursiops_truncatus
CTAGCATTTTATTTAAACTGAAAGCTTATTTATTCTTAAAAATAGAAATT---AAAAAGA---CATCTAAG---------
----ATGGGT-GAAGGTCATCAAAT-GTACAAAGTTCTAGTTAT--AAAATAAATAAGTCCAGGGGA-TGTAATGTACAA
CATGGCAACTATAGTTAATAGTACTGTAATGTATATTT------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------AAAAGTTGCTA-AGAG---ATTAGATCTTAAATAT-CTCATC----ATAAGAA------AAAAACTGTAAC
TGTGTGTGGTGATGG--ATGTTAACTGAACTTACTGTGGTGATCATTTTGCAGTATACACATATATCGAATCA---TGTT
GT-ACACCTGAAAGTAATATAA-TATTATAT-GTCAATTATATCTCAATTAAAATAAACAGATATTAACT---ATATC--
-----------TCAATTTTAAAAG---TTTATGAATTT-GCTGCTGGTACTTTCCTT-----TAAGAACCATTAGCACAA
AGCATGGAA
>Equus_caballus
CTAGTATTTTATTTAAACTGGAAACTTATTTATCCTTAAAAATAGAAATT---AAAAAAA---CATGTAAG---------
----ATATGT-GAAGGTGGTCAAAAGGTACCAACTTCCAGTTAT--AAAATAAATAAGTCATGGGAA-TGTAACGTACAG
CATGGTCACTATAGTTAACAATACTGTATTGTATATTT------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------GAAAGTTGCTA-AGAG---AGTAGATCTTGAAAGTTCTCATC----ATAAGAA------AAAAATTGTAAC
TATATGTGGTGCTGC--ATGTTAACTTGACTTATTGTGGTGATCATTTTGCAATATATACATATGTCGAATAATTATGAT
GT-ACACCTGAAACGAATGTAA-TGCCATAT-GTCAATTACATCTCCATTGGAAAAAAAAAAAACAAG-----AAAAC--
-----------TCACCT----AAA---TGTATGAATTT-GCTGCTCGTACTTTCCTT-----TAAGAACCATTAGCACAA
AGCGTGGAA
>Ceratotherium_simum
CTGGCATTTTATTTAAACTGGAAAGTTATTTATCCTCAAAAATAGAAACT---AAAAAAA---CACCTAAG---------
----ATGGGT-GAAGGTGGTCGAAAAGTACCAACTTCCAGTTAT--AAAGTAAATAAGTCCTGGGGA-TGTAACGTACAG
CATGGTCACTATAGTTAATAATATTGTATTGTATATTT------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------GAAAGTTGTTA-AGAG---AGTAGATCTTGAAAGTTCTCACC----ATAAGAA------AAAAATTGTAAC
TATGTGTGGTGATGG--ATGTTAACTAGAGTTATTCTGCT---CATTTTGCAATATATACATATGTTGAATAATTATATT
GT-ACACCTGAAACTAATATAA-TGTTATAT-GTCAATTATATCTCAATTG---AAAAAATAATCAAG-----AAAAT--
-----------TCACCT----AAG---TATATGAATTT-GCTGCCTGTACTTTCTTT-----TAAGAACCATTAGCACAA
AGCGTGGAA
>Condylura_cristata
CTAGCG-TTTATTTATACGATAAGCTTAAGTGTCCTTACAAATAGAAATT---TAAAGAA---AACCTAAA---------
----ATGGGT-GATGGTGGGCTAAAGGTACA-------------------------------------------------
------------------------TGTGAAGTATATTTGAAAGTTACT--ATAATGACGACAAAATGGTACTTTCCAGAG
AAGGGGTTGAAGGTGGAGGGGGCCAGTTGGATAGAGGCTG---ATGGTAACTATACTTTTGGTGGCCGGAGTGGTGTGGT
AAATACATGTCTCAAGGTGTGAAGCTGTATTCCTGAAACACATATAATGTCGTAAAATGTTGCTATCTGCACAACAAGT-
-----AAATAAATAAGCTTACTAGCAGTTACATGAAGGAAAAAAAAATTGCTGTTCTCCTTGCATTATCCTTATGCTGAT
GTTGTGTATTTTGTGGGGGAAGGGCAAGGAAGTGCCCATCCATTTTAATGGATGGATTAATGGTTAATGTGGAGAAAAGT
TAAAAAATAAAATGTTGCTATTGAG---AATAGCCATTAAAATGTTTCACC----TCAAGAA------AAATATTGTAGT
TATATGTGGTGGTAG--AGATTAACTAGATG---TGTGGTGATTATTTCTAAATA-ATGCA-GTGTCAAACAA-------
-----------------------------------AATCATCTCTCAATTTATA-------------------AAAGC--
-----------CCACCA----AAG---TTTATGAATTA-----CTGGTACTTTTTTTTTTCCTGAGAACAATTAGCACCA
AGTGTAGAA
>Sorex_araneus
CTAGGATTTTATTTAAATT-GGAACTTATTTATCCTTAAAAATAGAAATA---AAAAAAAACCCACCTGAG---------
----ATGGAT-GAA---------AAGGCACAAACTTCAA-CTGT--AAAATAAAGAAGTCCTGAGGATTATATTGACTAG
GATGGAGATGATAGTTATTAATACTGTAATGGATATTTAAAAGTTGCCTGATAATAAC----AAATTCTGGTCTCCATAG
GGGAAGGATAGGGAGGGAGGGAGGGAGAGAATAGATAATAGGTATGTTAATTTTACTTTTGGTGATGAGAGTGGCATGGT
ACATACAT-TATACAAGTGTGAATTTATATTCCGGAAACTTATATAGTCCTGGAAACCAATGGTACCTCAATAGAAAACA
AAGCAAAATAAATAA--CAACTAACAGTTATATGAAACAAACAAAAA----TGATCACTATGAATTATCCCTATATTAAT
GTTGAGTCTAATGAGGGATGTGATTAAGATAGCTCACATCCCATTT-----GTGGAT--ATGGTTTAT----AAAAAGAT
TAAGTAAATAAAAGTTGCTA-TGAG---AGTAGACATTAAAAGTTCTCACC----ACAAGGA------AAAAATCATGAC
TATTT----CAATGGATGTATTAATTAGACTTATGGTAGTGATTATTTTTCAGTATATCTATATATTAAACCATTATGCT
GTAATGCCTAAAATGAATAGAA-TGCTATATGGTCAATTGCATC--AGTAAAA--------------------AAAAA--
------------CCCCT----AAA---TTTATGAATTT-CCTTCCGGAAATTTCCTT----TTAAGAATCATTAGCAAAA
GGCACAGAA
>Myotis_myotis
CTA--------------TTAGAAAGTTATTTATCCTTAAAAA-AGAAATT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------AAAAA--
------------CACCC----AAG---TTTATGAATTTCGCTGCTGGTGTTTTCCTT----CTAAGAACCACTAGCACAA
AGCATAGAA
>Rousettus_aegyptiacus
CTAGCATTTTATTTAACCTAGAAACTTATTTATCCTTAAAAA-AGAAATT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------AAAGAAA
AATTTTTTTTTAAACCC----AAA---TTTATGAATTT-GCTGCTGGTATTTTCCCT----CTAAGAACCACCAACACAA
AGCAGAGAA
>Homo_sapiens
CTAGCATTTTATTTATGCTAGAAACTTATTTAGCCTCAACAATACAAATT------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------CAAAA--
-----------TCACCT----AAA---TTTATGAATTT-GCTCCTGGCACTTTCCTT----CTGAGAACCATTAATCCAA
ATCAGGGAA



Horse273_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
-GGGGGGTGGGGGAAATGGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGATC
TAATGTACAGCATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTT
CTCACCACACACAAAAAAATGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAAT
GTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTG
GAAAAA--------------------------------------------------------------------------
--
>Canis_familiaris
TTGAAACAGTATGCAATTTCCTGCCAGCAGCATATAAATTATCC------ACTTCAAGC---AAAAGCAAACACGGCA--
-----------GGAATAAGATTGATGTTGTTT-AA-GGTACAAACTTGCA---ACGAGCAGCAAACAAGTGAGAGGGCTC
----ACGCAGTGGGATGAATCCAGACAACGATGTTGAGCTACAATCATCAAACTTGCTAAGATATTAAGACCGAACCATC
CCCAAGGC-TGGGAAG--------------------GACCGAAGTGCT----ACCTCTACGACAGC---------ACCAT
ATGCCCACGTACCAAATTAATACA-CGCACGCCTTAAATGTCCACAA-CGGTAAATGTCAAATG-TATTCAATAAAAAAG
AAA------ACGTGTGCGTGCG----GCC---CACATGTTCTGACTTTTAC-TTGGTGAAGTAAAT-CA-----ACGACC
GT
>Felis_catus
CTAAAATAGCCTGAATATTCCTGCCAGTGGCATATAAACTCTCCACCCTCATTTTAAGC---AAA---------------
------------GGGGAAGGCCGCTGTTGATT-CAGGGCACAAACCTGCC---GGGGGCAAGACACCGGCC--AGAGATC
TA--ATGCCGTGTGACGCACGCAG--------------------TCCTCGAACCTGCTGAGTCACTAAGATCTAAGCA--
CCCAACAC-TGAAAAGAAAGGGTAAGTATGTACTGTGATGGAAGCACTCAACACCAGGACGGTGTTCATGGC--CGCAGC
ATATAAATGTGCCAAACTAACA--------------------CACAG-TGTTGTAGGTCAACTA-CATTCAACAGAAAAG
GAAA-----AAAGGTAAATTTG----GCC---AACGCATGACGATTCCCAC-TTTGACCAGTAAGTCCAGTT--ACAA-C
GT
>Manis_javanica
CTGAACTAGT------------------CACATATAAATTTTGATTTCTCATTTTAAGT---AAAAGTGAACATGGCA--
-----------GAGATAAAATGGATGTAGTTT-AA-GGTACAAACTTGGA---ACAAGT-GTGAATAAGCCACAGAGCCC
CAGAGCACGGCATAATGAATACAGA---CACTGTTGTACAACAGTCATCAAACTTGCTAAGAGGCTAACACTGAATTATC
CCAACCAC-TGA---------------------TGTGACAGAGATGTTAAACATCACTA-AACAGCAATTGTTTTACAAC
ATATAAATGTATGAAATTAACACATCATATGCCTTAAATTGAC---A-TATTATATATCAAATA-TATTCAATAAAAAAA
GAGA-----AAAAGGAAATACATTCTGCA---AATATATTCTGACTTCTGC-TCTAAGTAGTAAATGCA-TT--ATAC-T
GC
>Equus_caballus
TTAAATTAGTTTGAATTTTTCTGCCTGTCGCATATAAACTATCCATTCTCATTTTAAGC---AAAAGTAAACATGGCA--
-----------GGGATAAGATTGATGCTATTT-AAGGGTAGAAACTTGCA---ATGAGGAGTAAACAAGCCACAGAAGTC
TA--AGGCAGTAGAATGAATACAGACAGCAGTGCTGTACTACAATCACCAAACTTGCTAAGAGACTAAAACCTAACTATC
CCAACCAC-TAAGAAGAAAGGATAATTACACAGTGTGACAGACGTGATAAATATCGCTACAATGGCAATCACATTACAAT
ATACGAACGTGCCAAATTAACA---CGTACACCTTAAATTTACACAA-TATTGTAAGTCACAGACTATTCAATAAAAAAG
AAG------AACAGCAAATATG----GCA---AATATATTCTGACTTCTAC-TTTACGTAGTAAATCCAATT--ATAA-T
AT
>Ceratotherium_simum
TTAAACTAGTTTGAATTTTTCTGCCAGTCGCAGACAAATTATCCAATCTCATTTTAAGC---AAAAGTAAACATGACA--
-----------GGGATAAGATTGATGTTGTTT-AAGGGTACAAACTTGCA---ACGAGCAGTAAATAAGCCATAGAGGTC
TAAAGTACAGTATAATGAACACAGACAGCAATATTGTCCTACAATCATCAAACTTGTTAAGAAACTAAAACTTAACTATC
CCAATCAC-TAAAAAGAAAGTATAATTATGCAGTGCACTAGAGGTGCTAAATATCGCTACAATGGCAATCCCATTACAAT
ATGCAAATGTATCAAATTAACA---AGTACACCTTAAGTTTACACAA-TATTGTATGTCAAATA-TATTCAATTAAAAAG
AAA------AACAGTAAATATG----GCA---AATATATTCTGACTTCTAG-TTTAAGTAGTAAACCCAATC--ATAA-T
AT
>Sus_scrofa
TTAAACTAGTCTGAATTTTTCTACCAGGCACATAGAAATTATCCATTCTAATTTTAAGC---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------CAAAGTAAATATG----GCA---AATATATTTCAATTTCTAC-TCTCCCTAGTAAATCCCACT--GTCA-T
GT
>Bos_taurus
TTACTCTAGTTTGAAATTTTCTACCAGTCACATATAAATCATCCACTTTAATTTTAAGC---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------AAAAGTAAACATG----GCA---AATACATTCTGCTTTCTAT-GATGGGTAATAAATCCAATT--ATAA-C
GT
>Myotis_myotis
TTAAACTAGTTTGAATTTTTCTACCAGTCACATATAAGCCATCCATTCTCATTTTAAAC---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------AAAAGTAAACATG----ACA---AATATATTCCGACTTCTGC-TTTAAGTAGCAAATCCAATT--ATAA-T
GT
>Rousettus_aegyptiacus
TTTAACTAGTTTCAATTTTTCTACTGGCCACATATAAACAACCCGTCCTCATTTTAAGC---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------AAAAGCAAATATG----GCA---AATACATTCCAACTTCTAC-CTTGAGAAGTAAATCCAGTT--CTAG-G
AT
>Condylura_cristata
TTAAGGTGGCTTGAATTTTTTC-----------ATAAATCACTCATTCCCATTTTAAAT---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------GAAAGTAAATACA----GCA---AATATATTCTGACTTCTG----TAGGCAGTAAACCCAATTATCTAC-T
GT
>Sorex_araneus
TAAAATTAATCTGAATTTTTTTACCAATC------AAATTAT-CAATCTAATTTTAAGC---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------AAAAGTAAATATA----ACA---AATATATCCTGACTTCTAC-TTCAAGCAGTAAATCCAATT--ACAA-T
GT
>Homo_sapiens
TTAAACTAATTTGAATTTTTCCACCAGTTGCAAATAAATTATCCATTCTCATTTTAAGC---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------AAAAGTGAATACA----GCA---AATATATTTTGAATTGTACTTTTAAGTAGTAAATCCAATC--ATA--T
GC



Horse275_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTT
TGATATACGTATACATTGTGA---------AATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTT
ACCATT------------------TTTTTGTGTGTGGTGAGAACACTTAAGATCT---ACTCTCTTAGCAAATTTCA---
-------------------AGTATACAATACAGTATTATTAACTATAGTCACCATGCTGTACATTAGATCTCCAGAACTT
ATTCATCCTGCATAACTGAAACTTTGTACC-CTTTGACCAACATCTCCCCATTT------------CCCCCACCCCCCAG
CCCCTG----GCAACCACCATTCTACTCTCTGCTTCTATGAGTTTGACTTTTTTAGATTCCACATATAAGTGAGATCATG
CAGTATTTGTCTTT------------------------------------------------------------------
--------------------------
>Canis_familiaris
TGACTTCAGAGGAAGATAG--AAGTTATACATCCTCCACCCAGAAGC-AAAAGGTGGA-----TATTCTGGAGAAATTTT
TGCCT------TTCCATTTTTGTTGAGAAAGACCTGAC-ATATGTCACTGGATAAGATTAAGGTGTACAATATGATGGTT
TGATTCATATATA-ATTGGGA---------ACTGATAACCGCAATAGGTTTAGTCAAC--ATCCATCATATCATGGAGAT
ATAATAAAGAGAAAAAA--------TTCTATTTGTGATCGGAACTCTTAGGGTCTACTACTCTGTTAATAACTTTTCTGT
GTGTCATACAATAAGTTTGTATATGTCATACAGAAGTGTTAACCATAGTTATCTTGTTGTACATTCCACTCCCTGTACTT
ATTTATCTT--ACAACCATGAGTTTGTACC-TTTTGTTCATC-TTCCTTCAATT------------ACCTGTCTCTCCA-
CCTCTGGTAAGTAACCACAACGCTGACCTCTTTTTGTCTGAGTTTGGTGTGGGTTGTTTTGTTT----------------
-----------------TATATTGAAGAACT-TTTTTT---ACTGACACTCACAGAAATGTGGAAAGAAGCAAACTATAA
GAGGAAGGGGAAGATTAT-----TTG
>Felis_catus
TGATTTCAGAGGAAGATGT--AAGTTATAACTCCTCCAACCAGAAGC-AAAATGCTGA---CTTTTTTTGAAGAACTTTT
TCTCT-------TCCAGTTTTATTGAGAAATAATTGACTATATAACATTGTGCAAGTTTAAGG------------TGATT
TGATTTACCTAT--ATT-TGATTTACAATCAATGATGGCCGCAATAAGTTTAGTTAAC--ATCTGTCATCTTGTGTAGAT
ATAAATAAAAAGAAAAA--------TTCTACTTGCGATGAGAATTCTTAGGGTCT---ACTCTGTTAACTACTTTTC---
-------------------TATATGTGATACAGAAGTGTTAACTATAGTTGTCATGTTGTATATTATATCCCTAGTACTC
ATTTATCTT--AAAACTGGAAGTTTGTACC-TTTTGACCATC-TTCCTCCAGTTATCCTTCCTTCCACCCTACCCTCCA-
CCTCTG----GTAACCAAAAATCTGATCTCTTTCTCTATGAGTTAACTGTAGGTTGTTTTGTTTTG-----------TTT
-----------------TATATTGAAGAAC--TTTTTT---ACTGACACTCACAGAAATGTGGAAAAG----------AA
GAGGAAGAGGAAGATTATAC-TTTTA
>Manis_pentadactyla
TGACTTTGGGAGAAGATGG--AAGTGATACCTCCTCTAACCAGAAGC-AAAATGCTGA-----TATTTTGAAGAACAATT
TTTTT-------T-CAG-TTTATCAAGAAACAATTGAC-ATAGATTACCACCTAAGTTTAAGGCGTCCAACATGATGGTT
TGATTTACGCAT--ATTGTGA---------AATGATTACTGCAAT---TTTAGTTGAC--ATCTATCATCTCATGTAGAA
ACAATAAAAAGAGAGAAAAAGAAATCTCCCT-----GTGAGAAATCTTAGGATCT---ACTCTTTTAACAACTTTCC---
-------------------CATACATCATACAGCAGTGTTAGCTAGCCTCATCATGTCCTAAATCATTTCG-GGGTACTT
ATTTATCTT--ATAACTGGAAGTTTCTACCTTTTTGACCAAC-TTCCTCAGTAT------------CCTCCACCATCTA-
CCCTTG----GTAACCACAGATATAGTCTCT-TTTCTATGAATCTGGTGTTTGTTTGTTTGTT-----------------
-----------------TTTGATGAAGAAC--TTTTTT---ACTGA----CACAGAAATGTGGAAAGAAGCAAACTGCAA
GAGGAAGAGGAAGAGTATATTTTTTA
>Equus_caballus
TGACTTCAGAGGAAGACGT--AAGTTATACCTCCTCTAACCAGAAGC-AAAATGCTGA-----TATTTTGAAGAACTTTT
TTTCC--------CCA-TTTTATTGAGAAATAATTGGC-ATATGTCACTATATCAGTTTA---TAACCAGCACGATGGTT
TGATTTACATAT--TTTGTGA---------AATGATTACCACAATAGGTTTGGTTGAC--ATTAGTCATCTCATACAGAG
ATAATAAAAAAAAAAGAGAAAAAATTTCTCTTTGTGATGAGAAGTCTTAGGATTC---ACTCTCTTAAC---TTTCC---
-------------------TACATATCCTACAGCAGTGTCAAGTATAGTCATCATGTTGTACATTACTTCGCTAGTACTT
ACTTATCTT--ATAACTGGAAGTTTGTACC-TTTTGACCACC-TCCCTCCATTTCTACTT------TCCCCACCCTCAA-
-----------------CAAATCTGATCTCTTTTTGTATGAGTTTG--GTGGGGTTTTTTGTTTGT------TTGTTTTT
-----------------CACATCAAAGAAT--GTTTTT---ACTGACACTCAGAGAAATGTGGGAAGTAGCAAAATCCAA
GAGGAAGAGGAAGATTATACTTTTTA
>Ceratotherium_simum
TGACTGCAGAGGAAGATGTTAAAGTTATATCTTCTCTAACCAGAAGC-AAAATGCTGA-----TATCTTGAAGAACTTTT
TTTTT--------CCAGTTTTATTGAGAAATAATTGCC-ATGCATCACTGTATCAGTTTAAGCTGTACAGCATGATGGCG
TGATTTACATAT--TTTGTGA---------AATGATTACCAAAATAGGTTTAGTTGAC--GTCCATCATCTCATATAGAT
ATGACAAAAAGAAAAGA-AAAAAATTACTCCTTGTGATGAGAAGTCTTAGGATTT---ACTCTCTTAACGCCTTTCC---
-------------------TATATATCCTATAGCAGTGTTAAGTATAGT---CATGTTGTACATTACTTCTCCAGTACTT
GTTTATCTT--ACAACT---------CACC-TTTTGACCATC--TTCTCCAATTCCACCT------TCCCCATCCCCTG-
CCTCTG----GTAACAGCAAATCTGATCTCTTTTTCTATGAGCTTG--GTGGGTTTTTTTGTTGGTTTTGTTTGGATTTT
-----------------TAGATTGAAGAACTTTTTTTT---ACTGATACTCACAGATATGTGGAAAGAAGCAAACTGCAA
GAGGAAGAGGA-GATTATACTTTTTA
>Sus_scrofa
TGATTTCAGAAGAAGATGT--ACATTATATTTCCTTTAACCAGAAGC-AACATGTTGA-----CATTTTGAAGAGCT--T
ATTTT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------ACTGACACTCACAGAAATGTGGAAAGAAACAAACTGCAA
GAGGAAAAGGAAAATTATAGTTTTTA
>Tursiops_truncatus
TGATTCCAGAGGAAGATGT--AAGTTATACCTCCTCTAACCAGAAGC-AACATGTTGA-----TATTTTGAAGAACT---
TTTTT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------ACTGACACTCACAGAAACGTG-AAAGAAGCAAACTTCAA
GAGGAAGAGGAAGATTATACTTTTTT
>Miniopterus_natalensis
TGACT-CAGAGGAAGATGT--AAGTTATACCTCTTCTAACCAGATGC-AAAATGTTGA-----TATTTTGAAGAAAT---
-TTTT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------ACTGACAC----AGAACTGTGTAAA--------------
----------------ATCCTTTTTT
>Rousettus_aegyptiacus
TGGCTTCAGAGGAAAATGT--AAGTTATATCTCTTCTAACCAGATGT-AAAATGCTGA-----TATTTCGAAGAACT---
-TTTT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------ACTAACAC----AGAAATGTGGAAAGANNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNN
>Condylura_cristata
TGAGGTCATAAGAAGGTAA--AAGTTAAATCTCTCCTAACCAAAAGCAAAAATGCTGA-----TATTT-AAAGATATT--
GTTTA---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------ACTGATTC----AGAAATGTGGAAAG---CAAATTGTAA
GAGGAAGAGGGAGATTATGCTTTCTA
>Sorex_araneus
TGA----------AGATAT----TTTAAGTCTCCTCCAACCTCAAGC-AAAATTCTGA-----TATTTTGAAGATTT---
TTTTT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------ACT-ATACCCATAGTAATATGGTAAAAAA-AAAATGTAA
GAGGAAGAGTA-AATTATTCTTTTTT
>Homo_sapiens
TGACTTAAGTGGAAGATAT--AGGTTACACCTCCTCTAACTAGAAGC-AAAATGCAAA-----TATTTTGAAGATTTTTT
TTTTT---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------TCTGACGC----AGAAGTGTGGAAATAAGCAAATTGCAA
AAGAAAGAGGAACATTATAC---TTA



Horse276_LINE

>L1MAB_EC
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------TTTTTTTTTTTCAG-T
TTTATTGAGATATAATTGACATATAACATTGTATTATGTTTAAGGTGTACAACATAATGATTTGATATATGTATATATTG
T--------------------GAAATGATTACCACAATGAAGTTAATTAACACATCCATCACCTCACATAGTTACAAATT
TTTTTTTTGTTTKTGTGA--------------------------------------------------------------
-----------------
>Canis_familiaris
AAGTGAGGTACTTTAGTT-ATTCA-----------------------TT-ATTTTGAATCCCAGGAACCTAATTATGG--
TAT------------TAAGAA---CATGATTATTAAGTTTTTA--------------------------------AATAT
ATTTTATAAAACTTAAGATATCCAGATTATTGTCATTTCAACATGTACT-AGTATAAA-----AAAAATTACTATCAT-T
TTTATTGA-ATATGATTTACACATAGCAT---ATTA-GTTTCAGGTGTACAGCATAATGATTCAATATTTACATATATTA
CAAAATGATCAACAAAATAAAAAAATGATCACCAGAAAAAATCTAGTTAAGTCCATCAACCTCATACATACTTACAAAAT
TGTATGAC-------------CATGATCACTAATTTTGCA---AA--TAAAAATAAAATGTAAGCATTACTTCAAGGAAC
TTGATATCCTTCGCTTT
>Lynx_canadensis
AAGAGAAACATTTTAGTT-ATTCA-----------------------TT-GTTTTGAATC-CCTGAACCTAAATAGTAGA
TAC------------TAATAA---CATGATTATTAA-TCCTAAA---TATATATATATATATATATATATATATATATAT
ATCTTATTTAACTTAACAGATCCCAATCATTGTCATGGCCACATATAATGAGTATAA------AGCAAGTATTAATCT-T
TTTGTGGAGGTATGAATGATGCATAGCAT---ATTA-GTTGCAGGGGTACAGCATAATGATTCAATAATTGTATACATTG
C--------------------AAAGTGATCACCATGATAAGTCTAGTTAGCAT--CCACCAACATCCATAGTTACAAAAT
TTGGTAAC-------------CATGACCGTTGATTTTGCA---AA--TAAAAATAACATGTACGCATTTCTCCAGGGAAC
TTGATACCCTTCACTGT
>Equus_caballus
AAGTGTCACATCTTAATATCTTGAATATTAAGAATATTTGAATCTTCTT-ATGTTGAATATCCTGAATCTAATTACAAGG
TAT------------TAATAA---C---ATTAATAA-TTTTTA-----------------------------------AC
ATTTTATTTAGCTCAACATATCCAAATTATT---ATTCCAACATGTAATCAGTATAAAATAATAATAATTATTATTACAT
TTTACTGAGGTATAACTGACACATAACATTATATTA-GCTTTAGGTGTACAACATAATGATAAAATATTTGTAT--ATTA
C--------------------AAAATGATCACCATAACAAGTCTGGTTAACAT--CCGTCACCAAACATAGTTATGAAAT
TTTATAAC-------------CAGGATTATTAATTTTACG---CT--TAGAAACACAATGCAAGAACTTCTTAAGGGAAC
TTGATATTCTTTACTTT
>Ceratotherium_simum
AAGTGATACATCTTAGTT-ATTCA-----------------------TT-GTTTTGAATAGACTGAATCTAATTACAAGG
TAT------------TAATAA---CATGATCATTAA-TTTTTA---------------------------------ATAT
ATTTCATTTAGCTCAACATATCCAAATTGTT---ATTTCAACATGTAATCAGTATAAAAT---AGTAATTATTATTATAT
TTTATTGAGGTATAATTGACACATAACATTACATCA-GTTTCAGGTGTACAAAATAATGATTAAATATTTGTATACAATG
C--------------------AAAATGATCACCACAATAACTCTACTTAACAC--CCATCACCATATGTAGTTACAAAAT
TTTGTAAC-------------CATGATTATTAATTTTACA---CA--TAAAAATAAAATGTACCAACTTCTTAAGGGAAC
TTGATATTCTTTACTTT
>Sus_scrofa
AAATGACACATTTTAGTT-ATTCA-----------------------CT-ATGTTGAATAGCCTGAATCTAATTATAGGG
TAT------------TAATAT-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CATGATTATTCA-TTTAAA---AA--TAAAAATAAAAAATTAGAATTTCTTAAGGAAAC
--GATATTCTTCACTTT
>Bos_taurus
AAATGACAAACCTTAGTTAATTCA-----------------------TTAATGTTGAATACCCTGAATCTAATTATAGAG
TAT------------TAATAT-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------TACAATTATTAG-ATTTAA---AAA-TAAAAATAAAAC---AGAATTTCTTTAAGGGAC
TTGATATTTTTAATTTT
>Myotis_myotis
AAGTGACACATTTTAGTT-ATTCA-----------------------TT-TTTCGGAGTAGCCTGAATAAAATTGTAGGG
TAT------------TAATAT-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CATAATTTTTAA-TTAAAA---AAAATAAAACCAAAA-ATCAGAATT--TAAAGGGAAC
TTAATATTCTTCACCTT
>Pteropus_vampyrus
AAGTGATACATCTTAGTT-ACTCA-----------------------TT-ATCTGGAGTAGCCCGAATCTAATTTTAGGG
TGC------------TAATAT-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------AGTAATTTTTTCACTTTAA---GAA-TAAAGACGAAATATTAGAATTCCTTAAGGGAAC
TTTATAATCTTCGCGTT
>Condylura_cristata
AAGTGACACATTTTCATT-ACTTG-----------------------TT-ATTTTGAGAAGTCTGAATGTAATTATAGGG
TAT------------TAATA------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------GATGATTA---A-TTTTGA---GA--TAAAAGTAA-ATGTTAGAATCCCTTTAGGAAAC
TTACTATTTACCACTTG
>Erinaceus_europaeus
ATGTAAC------------ATACA-----------------------TT-ATTTTGAAAA--TGTGACATGGCTACAGGG
TATATGATATAAAAATAATAT-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CATGATTATTAA-TTTTAA---AA--TAAAAATAATGTAGTGGAGTTACTTAAGGGAAT
TTGATATTTATTTATTT
>Homo_sapiens
AAAAGATACATCTTAGTT-ACTCA-----------------------TT-ATTTTGAATTACCTGAACCTAATTATATGG
TAT------------TCATAT-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------AATGATTATTAT-TTTTGA---AAA-GAAAAA----GCATTAACATTT-TTAAGGGGGC
TCAATATTTTTCA-TTT



Horse278_LINE

>L1MAB_EC
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------TTTTTTTTTTTCA------------------------GTTTT------ATTGAGATATAATTGACATA
TAACATTGTATTATGTTTAAGGTGTACAACATAATGATTTGATATATGT----ATATATTGTGAAATGATTACCACAATG
AAGTTAATTAACACATCCATCACCTCACATAGTTAC--AAATTTTTTTTTTGTTTKTGTGATGAGAACTTTTAAGATCTA
CTCTCTTAGCAACTTTCAAATATACAATACAGTATTATTAACTATAGTCACCA-----TGCTGTACAT----TACATCCC
CAGAACTTATTCATCTTATAACTGAAAGTTTGTACCCTTTGACCAACCTCTCCCTATTTCCCC-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------
>Sus_scrofa
TTTGTAATAAGAAAAATTTGG-AAAAGGTACTGAGTATCATT---TGAGTAACTAACACTTAGCACTTTTCATATTCTAG
GGACTTTTCTTACTTTTCTTTGTGCTTTATTCCTGCCATCCTCCC-ACAGTGC--TATG---AGGTAGAA---GCTTTTT
TTTTTCCTCTTTCTCTTTTTTACTATGCATGGGCAGCCATTCTG---GCCTTTTTAAAAAATTGAGATATAATTGACATA
CAATATTATATTC-GTTCCAGATGGACAAGATCATGATTCTATATATAT----ATA------GAAGTGATCACCACAG--
------------------------------AGTTACAAAAA-------------CTTAGGATGAGAACTTTTAAGATCTA
CTTTCTT---TTCCTTCAGATACGCAATACAG--TTA-TAATGCTAGTCACCG-----TGCTGTACAC----TTCATTCC
TAAGATTTAT-TGTCTCCTAACTGGGAGTTTGTACCTTTCGACCACCTCC----------------AGGTAGAT---GGA
GTTA-CTGTACCTATTTT--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------ACAGATGAGAGA-----------------
--ACTGAGACCCAGAGAGGTTAAGTGACCTCTAGAG
>Tursiops_truncatus
TTTGTAGTAAGAAATGTTTTT-AAAAGATACTGAGTATAATTATAATAGTAACTAACACATAGCACTTGTTATGTACTCG
GAACTTTTCGT---------TGTGTTTTATTCCTGTCATCCTCCCAACAGCCC--TATG---AGGTAGAT-------GTG
GTGTTTTGTGGGTTTTTTTCCACTATGTGCAGGCAACCATTCAGTGTGTGTTTTTTTTAAATTGAGGTGT----GACATA
TAACATTA------GTTTCAGGTGTACAAAATAATGATTTTATTTATTTTTTCATTCATTTTGAAATGACCACCACAGTA
AGCCTAGTTA--ACATTCATCACCACAC--AGTTACGAAAAAATTTTT----TTCTTATGATGAGAACTTCTAAGATCTA
CTCTTTT-----CTTTCAAATATACAATACAG--TTATTAACTGTAGTCACCA-----TGCTGTAAATTACATACATCCC
CAGGACTTATTTCTCTCCTGACTGGAAGTTTGTACCTTTTGATCACCTTC----------------AGGTAGAC---ACA
GTTA-TTATCCCTATTTT--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------ACAGATGAGAAAACTGGAACACAGAGAGG
TTACTGGAACACAGAGAGGTTAAGTGACCTGTCTAG
>Equus_caballus
TTTGCAATAACAAATGTTTTTAAAAAGATACAGAGTATAATTATAATAGTAATA---ACACAGAACTTACCATGTGCTGG
AGACTTTTCTTACTTTTCTATGTGTTTTATTCATTTCATCCTCCTAAGGATGAGGTATG---AGGTAGAT----------
--------AAATTTTTTTTTTCCTATGTGAAGGCAACAGT--------CCTTTTTT----ATTGAGATATAATCAACATA
GAATATTATATTA-GTTTCAGGCATACAGCATAATGATTTAACTT-TGT----ATGTATTGCAGAATGATTACCACACTA
AGTCTAGTTA--ACATCTGTCACCACAC--AGTTAC--AAACTTTTT-----TTCTTGTGATGAGAACTTTTAAGATCTT
CTCTCTTAGCAACTTCCAAATATACAAGACAGTATTGTTCACTATAGTCACCT-----TGCTCTATGT----GACGTCCC
CAGGACTTATGTATCTAATAACTGGAAGTTTGTATCTTTTGACCTCCTTC----------------AGGTAGAT---ACA
GTTG-TTATCCCTGTTTT--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------ACAGATGAGAAA-----------------
--ACTGAGATGCAGAGAGCTCAAGGAACCTGTCTGG
>Ceratotherium_simum
TTTGCAATAAGAAATGTTTTTTAAAAGATACAGAGTATAATTATAATAGTAA-TAACACCCAGCACTTACCATGTACTAG
AGACTTTGTGTACTTTTCTATGTGCTTTATTCATCTCCTCCTCCAAACAATGC--TATG---AGGTAGAT----------
---------AAATTTTTTTTTCTTATGTGAAGGGAACAGT-------ATTTTTTTT----ACTGAGATATAATGGACATG
GAATATTATATTA-TTTTCAGGTGTGCAGCATAATGATTTGATTT-TAT----ATCTATTGCAAAATGATCACCACGATA
AGTCTAGTTA--ACGTCCGTCACCACGCATAGTTAACAAATTTTGTT-----TTCTTGTGATGAGAACTTTTAAGATCTG
CTCTCTTAGCACCTTTCAAATTTACAATACATTATTGTTAACTATAGTTGCTGTAGTTTGCTGTACAT----TACGTCCC
CAGGACTTATGTATCTTATGACTGGAAGTTTGTACCTTTTGACCACCTTC----------------AGGTAGAA---ATA
GTTA-TTATCCCTATTTT--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------ACAGATGAGAAA-----------------
--ATTGAGACACAAAGAGGTTAAGGAACTTGTCTAG
>Canis_familiaris
TTTGCAACAAGAAAAATTTCTTTAAAACCAAAGAGTATAAT---------AGGTAATATGTAGCATTTACCATGTACTAG
TGACCTTCCTTATTCTTCTCCATGCTGAATTCATTTCAACCTTCTAACAACCT--TATG---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------AAGTAGAT---ATA
ATTA-TTATCCCCAAGTT--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------ACAGACAAGAAA-----------------
--ACTG-----TTAAGGGGTTAAGTAACCTGTCTAG
>Felis_catus
TTTGCATTAAGAAATGTTTCTTAAAAGATACAGAGTATAATTACAATAATAG-------CTGACACATACCATTCACTAG
TGATTTTCCTTATTTTTCTCAGTACTTTATTCATGTTGTCTTCGT-GCACCCC--TCTG---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------AGGTAGAT---AGA
ATTT-TTATCCCCATTTT--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------ACAGGTGAGAAA-----------------
--ACTA-----GTAAGGGATTAAGTAACCTGTTTGG
>Manis_pentadactyla
TTTGCAAT---AAATGTTTTTTAAAAGATACAGGGTATAATTACAATAGTAAC---------ATACTTAGCATGTACTAG
GGACCTTTATGATTTCTCTATGCACTTTATT----TCATATTCCTAGCAACTA--TATG---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------ACGTAGAC---ACG
ATTA-TTATCCTTATTTT--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------GCTGATGAGAAA-----------------
--ACTG--------AGAGGTTAAGTGACCTGTCTAG
>Myotis_myotis
TTTGTAAT---AAATATTTTTTAAAAGATA--AAGTATAATTATAATATT-------ACTTAACACTTACTACGTACCAG
TAACCTTTCCTATTTTTA-ATGTATTTTATTCATTTCATCCCCCTAATGATAT--TATG---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------AGGTAGAT---ACA
ATTA-TTATCCCTGTTTT--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------ACAGATGAGAAA-----------------
--ACTG--------------------GCAAGTGTTG
>Rousettus_aegyptiacus
TTTGTAAT---AAATACTTTTTACAAGATA--GAGTATAATTATAATAGCTA-----ACATAGCACTTGCCTCATACTAA
CACCTGTCC-----------TATGCTGTATTTATTTCATCCCACTAACAA-----TATG---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------AGGTAGGT---A--
ATTA-TTATCCGTATTTT--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------ACGGATGAGAAA-----------------
--ACTG--------------------ACAGGTCAAG
>Erinaceus_europaeus
TTT-----------------------------------------------------------------------------
-----------------------------------------------CAAAGA-CTTAC---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------TGATAGTT---TGC
TTTATTTATTTATAATTAGATACAGACAGAAATTGAGAGGGGAGGGGAAGATAGAGAATGAGACAGAGAGATACCTGCAG
CTCAACTTCACCCCTTGTCAAGCTTTCGCCCTGCAGGTGGGGACCAGGGGCTTGAACCTGGGCCTTTGCACACTGTAATG
TGTGTGCTTGACCAGGTGCGCCACTACCTTATTTTCTTTTAATTTGTTCATTTTATTTTTTTTTAAATTTTTTAAATATT
TATTTTCCCTTTTTGTTGCCCTTGTTGTTTTTTAAATTGTTGTTGTAGTTGTTGTTGTCATTGTTACGGCAGAGAGAAAT
GGAGAGGAGAGGGGAAGACAGAGAGGGGGAGATGCCAGGCTAGCATGGGGGTGCCTCTTCTCGGGCGCATATTCTCTGGG
TTGGAGAGAACGCAACTGGAGCCAACCTGGGCTGCTACTCACTCATCGACATGAGAGAGATGACCCAGGAGCAGAGCTCT
TGGTGGCAAGGCGATTCAGTTCTTTATTGATCAGAGAGCCAAGGCTTTTAAGAGTCTGGAAGTGGCAAGTCAGAAGTTGA
AATGGTTAGGAAAGGGGCGGAGAAAGGCGAAAGGGCTGGGAAAGGTAGGAACTACCGTAGCAACTGT----TGCGAGGGT
TTTAACTGGTAGGATAAATAATACTCTGCAGGCAGGGAGGGTCTTGAGGGTAGAAAGAAGATAGATCAAAGGAATGGAAT
GGGTGGGGATCTTTCAGGCAAAACAATGATTATGTAGATAATAAGGGAGCAGGCCATAGTATCAGGAATGCAGGGTTCTT
TGTGAGGCAGGGAGTCTGATAAGACAAGGCAAACCTTGGGGGGTTTTGTCCCTCCTTGCTCGACCTCTCAGTAGAGGTCA
AGCCCTGCCAAGCTGAACCATATCCTCACAATTTCCCCGACAGGGAGAGAAAGACACCAGCAGACCTGCTTCACTGCCTG
TGAAGTGACTCCCCTGCAGGTGGGGAGCCGGAGGCTGGAACCAGGATCATTTTATATTAATGAGAGAGATACAGAAAGAC
AAATACCAGAGCACTGCTCAGCTCTGACTTATGGTGGTGCTGGGGCTTGAACCTGGGACCTCAGAGCCTCAGGCATCAAA
GTCTTTTGCAGAACCTTTATGCTATCTCCCCAGACCAACTTTCCCTATTTTACAGATGAAAGA-----------------
-------------------TTAAATCACCTGTTCAG
>Solenodon_paradoxus
TTTGTTTGAAGAAATGTTTTT-AGAAAAGATAGAACGTAATTATAATAGTAACTAACATATAACATTTACCATG---CCA
GGACTTT----ATCTTCCTATGTGCCTTATTCATTTCATCCTCCTAACAAC----TATG---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------ATGTAGAT---ACC
ATTA-TTATTTCTATTTT--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------ACAGGTGAGAAA-----------------
----------ACAGAGAGGTTAAGTAACCTGTACAG
>Homo_sapiens
TTTCCAGTAAGGAATGGTTTTTCTATGATATAGAATATAATTGTAGTAG----------CTAAAACTTTCT------TAG
GGACCTTTCTTATTGTTCTGCGTGCTATATTCATTTAATCCTCCTAACAAAGT-CTTCG---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------AGGTAGAT---ACA
GTTA-TTATCTCTATTTT--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------ATAGATGAGAAA-----------------
--ACTGAGGCACAAAGAGGTTAAGTACCCTGTGCGA



Horse281_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
---------------------------------TTTTTCCAGCTTTATTGAGGT-----------ATAATTGACAAATAA
AAATTGT---ATATATTTAAGGTGTACAACGTGATGTTTTGATATACGTATACATTGTGAAATGATTACCACAATCAAGC
TAATTAACATATCCATCACCTCAC--------------------------------------------------------
--------------------
>Sus_scrofa
AAGGAAA-GAGTAGTTGCTAGGAA-AAACACAGGAA-----AAGAGACATT---TCATAGATAGAGACATACATACATAC
GTACACACATACATAAACACATAGGTTTTT--------------TAACTGAGGT-----------ATAATTGACATTATA
ACATTATAACATGAGTTGCAGGTGTACAACATAATGATCTGATATTTGTATATATTTTAAAAT-ATCACCACAGGAATTT
AAGTT-------CCA------------TCTCAGGTAGATATTTT---GACAAGATTTTGCTACATGTCGTGATGAGATTC
ATAAAATATTCAGTAAAATT
>Bos_taurus
AAAGAAA-GAGTAGTTGCTAGGGA-AAACATTAGAAATGAGAAGAGAGATT---TCTT-GATAGATCCATACATACATAC
ATACGTATATACACAGATA-------TTTT--------------TTACTCACATATATAATCATCATAATTGACA-----
----TATAAGTTTAGTTACAGGTGTTTAACATGATGATTCAATATTTGTAAATATTATAAAAT------------AAATC
AAGCTACCCT--CCA------------TCTCAGGTAGATATTTT---CATG-GATTTTGCCACATGCTCTGATGAAACCC
ACAGAATACTCAGTA---TT
>Equus_caballus
AAGGAAA-GAGTAGTTGCTGGAGAGAAACACTGGAAAAGAGAAGACAGAAT---TCTCAGGTAGAGATATATTTATATAT
-----TATATATATATATAATATTCTTTTT--------------TTACTTAGGT-----------ATAACTGACA-TATA
ACATTAT---ATTAATTTCAGGTGTATAAGATGATGCTTTGATATTTGTATATATTGTGAAATGATCA-CACAATAAGCC
CAGTTAACAT--CCA------------GCTCAGGCAGATATTCT---GATGAGATTTTGCTACATGTTGGGAAGAAATCC
ACAAAATCCTCAGTAAAATT
>Ceratotherium_simum
AAAGAAA-GAGTATTTGCTGCAGA-AAACACTGGAAAAGAGAAGACAGAAT---TCTCAGGTAAATATAAATATATATAC
--------------------------TTGT--------------TTAATGAGGT-----------ATGATTAACA-TAAA
ACATTAT---ATTAGTTTCAAGTGTACAACATAATGCTTCGATATTTGTGTATATTGTGAAATGATCACCAAAATAAGTC
TAGTTAACAT--CCA------------TCTCAGTCAGATATTGT---GACAAGATTTTGCTACATGTGGTGATGAAACCT
GCAAAATCTTCAGTAAAATT
>Canis_familiaris
AAGGAAA-GGGTAGTTGCTGGGGA-AGATGCTGAAAGAG--AAGAGAGAAT---TCCCAGGTAGCTA-------------
---------------------------TTT--------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------GACAAGATTTTGCTGCATGCCGTGATGAAACCC
AGAGAATCTGCGCTGAAATT
>Felis_catus
AAGGAAA-GAGTACTTGCCAGGGA-AGACACTGGAAAAGAGAAGAGCTACT---TCTCAGGTAGGTAT------------
--------------------------TTTT--------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------GACAAGATTTTGCTACGTGCGGTGATGAAACCC
AAAGATTCTGCAGGACAATT
>Manis_pentadactyla
AAGGAAA-GAGAAGTTGCAGAGGA-AACCTCAGGAAAGGGAGGAGAGAAAT---TCTCAGGGAGGAA-------------
--------------------------TTTT--------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------GACAAGATTTTGCTGCATGTTGTAGTGAAACCC
GTAGGATCTTCAGTAAAATT
>Myotis_myotis
AAGGAAA-GAGTAGTTGTTGGGGA-AAACAGTGGAAAGGAAAAGAG--AAT---TCTCAGGTAGATA-------------
--------------------------TTTT--------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------GACAAGGTTTTGCTACCTGCAGTAAAGAAACCT
ACAAAATCTTCAGTAAAATC
>Rousettus_aegyptiacus
AAGGAAA-GAGTAGTTGCTGGGGA-AAACACTGAAAAGGAGAAGATGAAAT---TCTCAGGTAGATA-------------
--------------------------TTTC--------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------GATAAGAT--TGTTACATGTGGCGATGAAACCC
ACAAAATCTTCAGTAGAAGT
>Condylura_cristata
AAAGAAA-GAGTAGTTGCTGGAGGAAAACAGCAGACAAGAGAGGAAAGAAT---TCTCCGGAGACTA-------------
--------------------------TTTC--------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------GACAAGATTTTGCTGCTTATTATGATGAACCCC
AGAAAATCTTTAGTAGAATT
>Sorex_araneus
AGCAGAG-GAGTAGATGCTGTTGA-AAGGACTGAAATTTAAAAG-GACACT---TCTTAGATA-----------------
--------------------------TTTT--------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------GTCCAAATTCTGCCATACTCAGTGATAAAACCA
AAAAAAAATCTA-TAACACA
>Homo_sapiens
AAGGAAAAGCACAGTCACT-AAGA-AAAAATT-----GGGAAAAAAAGAAT---TCTCAGGTAGATA-------------
--------------------------TTTT--------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------GACAAGATTTTGCCACATGTTGTGATGAAATCC
ACAAAATCTTCAGTAAATCT



Horse287_LINE

>L1MAB_EC
--------------------------------------------------------------------------------
--------------TTTTTTTTTTTCAGTTTTATTGAGATATAATTGACATATAACATTGTATTATGTTTAAGGTGTACA
ACAT----AATGATTTGATATATGTATATATTGTGAAA--TGATTACCACAATGAAG-TTAATTAACACATCCATCACCT
CACATAGTTACAAATTTTTTTTTT--------------------------------------------------------
--------------------
>Ailuropoda_melanoleuca
CTGT--AT-AACA------TCC-TTTTTGTT-----CATGTATTCATTCACTTCTTT--------CACAAATG---TTT-
ATTCACTTTTT---------------------TTTTAAAT-----------ATGACATAGCATTAAGTTTTAGGAGCACA
GTGT-------AATTTGATATTTGTATTTATTGCAAAAAGTGATCACCACAGTAAGT-TTAGTTA--ATATCTGTCACCA
TACATAGTTACT---------------TTTATTGACTTCTT---GATTTGTGTTGGGTACTATGATGTAGTCAGAAACAA
GACAAACTTG----TCTGGG
>Felis_catus
CTGT-AGT-AACA------TAC-TTTTTGTT-----CATGTACTCATTCGCTTACTC----CTTTCATGAATG---TTT-
ATTGACTTTTT--------------------TATTGAAATATAATTGAC--ATAACTTTAA-----GTTGCAGGAGCACA
GTGT----AATGATTTGATATTTGTATAAATTGCAAAAAATGATCACCAC---AAGT-CTAGTTG--ATATCTCTCATCA
TTCATAGTTACT---------------TTTGTTGACTTCTT---AATTTGTGTTGGGTCCTATGATGTAGTCAGAGACAA
AACAAAGTTGG---TCTAGG
>Manis_pentadactyla
CCGT-AGTAAACA------TCTTTTTTTGTT-----CATGTGTTCACTCATTTACTTACTGCTTTCACAAATA---TTT-
ATTGACTTCTT-------------TT-------TTGAGTTACAGTTGAC--ACAACATTA------GTTTCAGGTGTGCA
GCAT----TATA---------CTGCACATACTGTAAAA--TGGTTGCCACAATAAGTCCCCATTA--ATGCCTGTCCCCA
TGCATAGTTATG---------------CTTACTGATGTCTT---GATTTGTGCTGGGTACTATGATGTAGTTAGAAACAA
GACAAAC-TGG---TCTAGG
>Sus_scrofa
CTGT-AGT-AACA------TCC-TTTTTGTT-----TATGTATTCATTTACTCACTCACTACTTTGACAAATA---TTT-
AGTGACTTCCT---------TTTTTTAAAAAAATTGAGGACTACTTGCC--ATAACATAATATTA-GTCTCAAGTATACA
ACAT----AATGATTTGATATTTGTATACACTGCAAAA--TGATCACCTCTGTAAGT-CCAGTTG--ACATTTGTCTCCA
TACATAATTACA---------------TTTATTGATTTCTT---GATATGTGCCAGATACTAAGATATAGGTAGAAACAA
GACAAATTTGG---TTTAGG
>Tursiops_truncatus
CTGT-AGT-AATA------TCC-TTTTTGTT-----TAT-TATTCACTCACTTCCTCACTCCTTTCAGAAATA---TTT-
ATTGACTTCCT------------TTTTAAAAAATTGAGGTATAATTGAC--ATAACATTGTATTA-GTTCCAGGTGTACA
ACAT----AATATTTAGATGTTTGTATATACTGCAAGA--TGACCACTTCAGTAAGT-CCAGTTA--ATATTTGTCTCCA
TACATCGTTACA---------------TTTATTGACTTTTT---GATATGTGCTGGGTACTATGATGCAGTTAGAAACGA
GACAAACTTGG---TTTAGG
>Equus_caballus
CTGTAAGT-AATA------TTC-TTTTTGTT-----CATGTATTCATTGACTTGCTTACT-CCTTCACAAGTG---CTT-
ATTGGCTTTTT-------------TT------ATTGAGGTATAATTGAC--ATAACATTATAGTG-GTTTCAGGTGTACA
ACGT----AATGATTAGATATTTGTATATATTGCAAAA--TGATCACCG---------CCAGATA--ACATCCGTCACCA
TACGTAGTTCCA---------------TTTATTGACTTCTT---GATTTGTGCTGGGTACTATGATATAGTTAGAAACAA
GACAAACTTGG---TCTAGG
>Ceratotherium_simum
CTGT-AGT-CACA------TTA-TTTTTGTT-----CATGTATTCATTGACTTACTC----CTTTCACAAGTT---CTT-
ACTGACTTTTT------------TTT------ATTGAGGTATAATTGGC--ATAATGTTTTATTA-GTTTCAGGTGTACA
ATGT----AATGATTCGATATTTGTATATATTGCAAAA--TGATCGCCACAATAAGT-CCAGGTA--ACATCCATCATCA
TACATAGTTACA---------------TTTATTGACTTCTT---GATTTGTGCTGGGTACTATGGTATAGTTAGAAACAA
GACAAACTTGG---TCTAGG
>Desmodus_rotundus
CTGT-AGT-AACA------TCC-ATTTTGTT-----CAGATATTCATTCACTTATTC----CTTTCACAAATA---TTT-
ATTGACTTCTT-----------ATTTTTAAAAAATGAGTTGCAATTGAC--ATAACATTATATTA-GTTTCAAGTGTACA
ATGT----AACAACTCAACATTTGTATATATTGCAAAA--TGATGACCACAGTATG-----------ATTACCACCACTA
TAAATA---------------------GTTACTAGCTTCCT---GATTGGTGCTGGGTACTGTGATACAGTTAG----AA
GACAAACGTGGCCATCTAGG
>Rhinolophus_ferrumequinum
CCGT-AGT-GACA------TCC-TTTGAGTT-----CAGGTATTCACTCACTTATTT----CTTTAACAAATT---T---
ATTGACTTTTT---------------AAAAGAACTGAGTTATAATTGAC--ATAACATTATATTA-GTTTGAGGTATATA
ACATAATGAATGATTCGCTATTTGTACATATTGTAAAA--TTGTCACCCCGGTATGT-CCAGTTA--ACATCCATCACTA
TTCATAACTGCA---------------TTCATTGGTTCCTT---GGTGGGTGCTGGGTGCTATGATACAGTTAGAAAAAA
GACAGGCGTGG---TCTAGG
>Condylura_cristata
CTGT-AGT-AATACAGCAGCCA-GTTTTTTT-----CAAGTTCTCAT-CACTT--------CTTCCATATATT---TT--
ATTGACTT-AA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------GACTTTTGTTGG-------------ATTAGAAACAA
GACAGACTTGA---CCTAGG
>Uropsilus_gracilis
CTTT-AGT-AACA------TCA-GTTTTTTT-----CATGTGTTCAGCACATTTTCC-----ATAAATAAATT---TTTT
TTTTAC---TA---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------GATTTCAGCTGG-------------GTTAGAAGCAA
GACAGACTTGG---TATAGG
>Homo_sapiens
CTGT-AGT-AACA------TCC-TTTTTTTTTCTTGTATTTATTCATTCATTTATTT--------CACAAATA---TTT-
ATTGATGGCTT---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TATTTGTGCTGGGTGCTCTGATACAGTTAGGAACAA
GACAAACTTGG---TCTAGG



Horse289_LINE

>L1MAB_EC
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------TTTTTTTTTTTCAGTTTTATTGAGATATAATTGACATATAACATTGTAT
TATGTTTAAGGTGTACAACATAATGA------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
>Equus_caballus
TCATTGACATTATCAATAGAACAGGAGCCTTGGAACTACCATAGACCCAA---CATAGTAGA--GTTTT-----------
--------------------------------------------------------------------------------
---TTTTTAATTGAGT---------------------------------------------------AT-ATCGACATAA
CATTCTATTACTTTCAGGTGGGTTTTTT------------TTGTTTTTTATTGAGGTATAATCGACATA--ACATTATAG
TA-GTTTCAGGTGTA--------------CACAGTAGGGTTTTTAAA---AAACTAAAGTTGGTAATTAAACATCA----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
>Ceratotherium_simum
TTATTGGTATTATCAATATAACAGGAGTCTTGGAACTACTGTAGATCCAA---CATAGTAGGTTATTTT---TTTTTTTT
NNNNNNAACCCGGGCCTCCGCAGCGGAACGTGCGCACTTAACCGCTTGCGCCAC------CGGGCTGGCCCCAGTAGGTT
ATTTTTTTAATTGAGT---------------------------------------------------ATAATTGACATAA
CATTATATTAGTTTCAGTTGGGTTTTT-------------TTGCTTTTTATTGAGGTATAATTG-------ACATTATAG
TA-GTTTCAGGTGTA--------------CATAGTAGGGTTTTTTTA---AAACTGAAGTTGGTAATTAAATATCAG---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------TATCTGGCTTCA-----------------
--------------------------------------------------------------------------------
-------------------------------------------------TAAAACTATCTG
>Myotis_myotis
TTATTTGCATTGTCAACAGAATAAGAGTCTTAGAACTACTGTAGACCCAA---CACAGTAGATTTTAAT-----------
----GGAGTACAGGGGTTGGCAAAAGTAGGTCTACAGTTGTCCGTATGGAAAAAGACATGCAGGTTATAATTATTACTGT
AGTTTATTAACTGTGTTTCATGTACTCACAAGATCAGTACTATAAATCTATTCTTGCCCACTCCTGAATAATTGACA---
-------TTCGTTTCAGGTGGGTTTTTGTGTGTGTGCTTTTTATTTTTTATTGAAGCATAATTGATATA--ACATTGTAT
TA-GTTTCAGGTGTA--------------CACAGTAG--ATATTTTT---AAACCAAAGTAGGTAACTAAATATCAG---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------TATCTGGGCTCA-----------------
--------------------------------------------------------------------------------
-------------------------------------------------TAAAAATATTTA
>Rousettus_aegyptiacus
TTATTTGCATTATCAACAGAACAGGAGTCTTGGAACTACTGTGGACCCGA---CACAGCAGGTTGTTTT-----------
--------------------------------------------------------------------------------
--TTTTCAAATTGATT---------------------------------------------------ATAACTGACA---
-----TATTAGTTTTATGTGAGGTTTTGGAGGG-------CTTTTTTTAATTAAGGTATTACTGATATA--ACATTATAT
TA-GTTTCAAGTATA--------------CATAGTAG--GTATTTTT---AAACTAAAGTTGGTAATTACG---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------
>Canis_familiaris
TTATAGGCATTAGCAACACAATAGGAATCTTGGGCCTAGCATAGACCCAC------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------CATAGTAG--GTATTTTT---AAACTAAAGTTGGTAATTAAATACGAA---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------TATCTGGCTTCA-----------------
--------------------------------------------------------------------------------
-------------------------------------------------TAAGAATATTTA
>Felis_catus
TTATTGACATTATCAACACAACAGGATTTTTGGACCTA--------ACAC------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------CATAATAG--GTATTTTT---AAACTAAAGTTGGTAATTAAGTATCAG---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------TATCTGGCTTCA-----------------
--------------------------------------------------------------------------------
-------------------------------------------------------TATTTA
>Manis_pentadactyla
TTAACGGCATTATCAACA-----GGAGTCTTGTAACTACTGTAGATGTAA------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------CATATTCTATGTATTTTT---AAACTAAAGTTGGTAATTAAATAACAG---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------TATCTGGATTCA-----------------
--------------------------------------------------------------------------------
-------------------------------------------------TAAGAATATTTA
>Vicugna_pacos
TTATTGGCATTACCAACGGAACAGGAGTCCTGGAACTAATGCAGACCCAA------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------GAGAGTAG--GAATTTTA---AAACTAAAGCTGGTAATTAAGTATCAG---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------AATCCGGCTTCA-----------------
--------------------------------------------------------------------------------
------------------------------------------------------ATATTTG
>Bos_taurus
TTAATGGCATTAGCGACAGAACAGGAGTCCTGGAACTACTACAGACCCGA------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------CAGAGTAG--GTATTTTT---AAACTAAAGTTGATATCTAAATGGCAGTAT
CTCTGGGACTTCCCTGGTGGGTCAGTGGTTAAGACTCTATGCTTCCACTGCTGGAGGCATGGGTCTGATCCCTGGTTGGG
GAGCTAAGGGCTTCCCTGATGGCTCAGTGGTAAAGAATCTGCTTGGAATGAAGGAGACCCAGGAGTTGCAAGTAGCTGAG
ATCCAACATGCTGCACAGTGTGGCCAAAAAACAACAACAAAAAAAGAGGAATATCTGGCTTCA-----------------
--------------------------------------------------------------------------------
-------------------------------------------------TAAGAATATGTG
>Condylura_cristata
TTATTGGCATTATCAAAAGAAAGGGAGCCTTGGAACTACTACAGATCCAA------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------TACA-TAA----ATTTTT---AAACTAAAGTTGGTAGTGAAATATCAG---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------TATCTGGCTTT------------------
--------------------------------------------------------------------------------
-------------------------------------------------TTAAGATATTTG
>Sorex_araneus
TAATTAACATTATCAACAGA-----AGTCTTGGAAATACCATGGACTTAA------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------AGTTATCA--ATACTTTT---AAACTAAAGTCG-CAATTAAATATCAG---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------TATTTGGGGCCAGAGATAGAACAGTAGGT
AAGACCTCGCCTTACTTGTAGCCAACCTGGGTTTGATTCCTGGCACTGCAGATGGTCCCTTAAGCACTGCCAGAAACAAT
CCCTTAGCTCAGTGCCAGGAGTAAGCCCTTAGCACAGCTGGGCGTGAAGCAAAAATTTTTA
>Cavia_porcellus
TTATTGGCCTCAACAACAGAATAGAAGCTTTGGAACTA-TATGGTCTCAA------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------CCTAATAA--GTATTCTT---AAACTAAAGCTGGCAATGAATTATCTG---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------TGTCTAGTGCCA-----------------
--------------------------------------------------------------------------------
------------------------------------------------TAAAGAGTATTTG



Horse290_LINE

>L1MAB_EC
--------------------------------------------------------------------------------
------TTTTTTTTTTTCAGTTTTATTGAGATATAATTGACATATAACATTGTATTATGTTTAAGGTGTACAACATAATG
ATTT----------------------------------------------------------------------------
---------------------------------------------------
>Equus_caballus
ATTTGATCTTGTAGTTCTTATGATTTATCTACATAAAAGGTAATATACTTTTGTTATTTT-CCC---CCAAGGGCAATAT
TTT----------------TTT--ACTAAGCTATAATTAACACATAATATTATGTCA-GTTTCAGATGTACAACAT----
-------CCAAGGATA---TTTT---ATTAATAACGCATGCTCTTATAGAACATT-------------------------
----------------------TTTTTCTCTTTA--CTTTCTTTTATCTAC
>Ceratotherium_simum
CTTTGATCTTGTAGTTCTCATGGTTTATCTACATAAAAGGTAATATACTTTTGTTGTTTT-TCA---TCAAGGGCAGTAT
TTT----------------TT---ATTGAGGTATAATTAACATATAATATTATATTA-GTTTCAGGTGTACAACAT----
-------CCAAGGATAATATTTT---ATTAATAACAAATTCTCTTATAGAACAT--------------------------
----------------------TTTTCCTTTTTA--CTCTCTTTTACCCAC
>Myotis_myotis
GTTTGATCTTGTGGTTCTCATGTTTTACCTAAATAACAAGTGATATGCTTTTGCTATTTC-CCC---TCAAGGACAATAT
ATC----------------TTT--------------TTAATATATACTATTATATTA-ATTTCAGGTATACAACAT----
-------CCAAGGACAATTTGTT---ATTAATAACAAATGCTCTTATAGAACATT-------------------------
----------------------TTACCTTCTTTT------------TCCAC
>Rousettus_aegyptiacus
TTTTGACCTTGTAGTCCTTGGGGTTTATCTATATAACAGGTAATATGCTTTTGTTTTTTT-CCA---CTGAGGACAATAT
ATT----------------TTTTTATCGAGGTATAGTTAACCTATAAGATTATATTA-GTTTCAGCTATACAACAT----
-------TCAAGGACAATATTTT---ATCAACAACATATATTCTT-----------------------------------
------------------------------------TTTACTTTTATTCAC
>Canis_familiaris
TTTTGATCGTATAGTTCTCATGGTTTGTCTACATAAAAGGTAATTTACTTTTGTTCTTTT-CCC---CCATGGACAATAT
TTT-----------------------------------------------------------------------------
--------------------------ATTCATAACAATTATTCTTATAGAATAT--------------------------
----------------------TTTTTCTTTTCA---CTTTTTTAATCTAC
>Felis_catus
TTTTGATCTTATAGTTGTCATGGTTTATCTACATAAAAGGTAATACACTTTTGTTATTTTCCCC---CCAAGGGCAATAT
GTT-----------------------------------------------------------------------------
--------------------------ATTAATAACATTTGTTCCTATAGAACA---------------------------
----------------------TTTTTCTTTTTA-CTTTCTTTTTATCCTT
>Manis_javanica
CTTTGATCTTGTAGTTCTCATGTTTTATTTACATAAAATGTAGGATGCTTTTGTTAGTTT-TCC---CCAAAGACAAT-T
TTT-----------------------------------------------------------------------------
--------------------------ATTAGGACCACATGTCCTTACAGAACACT-------------------------
----------------------TTCTCCTCTTAT--TTTCTTGTTGTCCAC
>Sus_scrofa
CTTCCATCTT---GTTCTTGTGGCTTATCTACAAGA-------------TTTTTTACTTT-CCC---CCA-GGACAATAT
TTT-----------------------------------------------------------------------------
--------------------------AGTAATAATGA-TGTTCTTTTAGATCATT-------------------------
----------------------TTTTTCCTTT------TTTTAAAACCCAT
>Bos_taurus
CTTTGATCTTGTAGTTCTTGCAGCTTATCTACATAAAAGCTAGTGTGCTTTTTGTGATGCTCCC---CCA-GGACAATAT
TTT-----------------------------------------------------------------------------
--------------------------ATTAATAACAAA-GATCTTATAAA------------------------------
------------------------TCTTGTTTTA--TTTTTAAAAATCCAC
>Erinaceus_europaeus
CATTAATATTATAGTTCTCATAG-TTATTTA--TAAAACGCCATGTGCTTTTGTCATTTT-CCC---CCAAGGACAACAC
TTT-----------------------------------------------------------------------------
--------------------------ATAAACAACAAATGTTCTTCTAGAACATTTCCTCCTCCTCCTCCTCTTCTTCTT
CTTCTTCCTCTTCTTTTTCTCCTCCTCCTCCTCCTCCTTCTTTTTGTCTAC
>Cavia_porcellus
CTTTGACTTTTT------------------------CAGGTAATGTGCTTTTACTGTTTT-CCT---CCAAGGACAGTAC
TCT-----------------------------------------------------------------------------
--------------------------ATTAACAATAAATGTTCTTATGGGTCATT-------------------------
----------------------TTTTTTCTTTTTGCCTTCTTTCTGTCCAC



Horse291_LINE

>L1MAB_EC
--------------------------------------------------------------------------------
-AAAAATTTGTAACTATGTGAGGTGATGGATGTGTTAATTAACTTCATTGTGGTAATCATTTCACAATATATACATATAT
CAAATCATTATGTTGTACACCTTAAACATAATACAATGTTATATGTCAATTATATCTCAATAAAACTGAAAAAAAA----
---------------------------------------------------------------------------
>Equus_caballus
TGTGAGTCATCAAAATCCTTAGCAATAA--------CTTCCACTTTTGCCCTGCTATT---AAAAA-TG-----TATG--
-----------ATCTGTGTGAGAAGATGGT--CGTTAGCCGAACCTATTGTAGTGACCATTTCACAATATGT--GTAAAC
CAAACCATCATACTGTACACCTTAAAC-TTATACAGTGATGTAGCTCAATTATTTCTCAATAAAACTGGAA---------
AAAAA-TGGGTGAGATG---AAA--ACTGC--AAAAACTTAAATAATATGTTAGAGTCAATT-TTAGATTTCTAA
>Tapirus_indicus
CGTAAGTCATCGAAATCCTTGGTGACAA--------CGCCTACTTTTGCCCTGCTATT---AAAAA-CGGGTGAGATG--
-----------ATCTATATGAGAAGATGGA--TGTTAGCTGATCCTATTGTAGTAATCACTTCACAA-ATAC--ATAAAT
CAAACCATCATGCTGTATGCCTTAAAC-TTATGCAGTGATGTGTGTCTGTTATGTCTCAGTCAAACTGGAA---------
AAAAA-TGAGTGAGATG---AAA--GCTGC--AAAAACTTAAGTAATATGTTAGAGTCAACT-TTAGATTTCTAA
>Myotis_myotis
TG-GAGTCAACAAAATCCTTAGTGATAA--------CTTCTACGTTTGCCCTGCTATT---AAGAAATGAGTGAGATG--
-----------ATCTATACGAGATGATCAA--TGTTAGCTGAATCTACTG--ACAATCATTTCACAAT-TAC--GTAAAT
CAAACCATCATG---TATACTTTCAAG-TTATACAGTGATATATACCACTTATTTCTGAATAAAA-TG-AA---------
AAAAA-TTAGTGAGATG---GAA--GCTTT--AAAAAAT-AAATAATATGCTAATCATTTTT-TTAAATTTTCAA
>Rousettus_aegyptiacus
TGTAAGTCATCAAAATTCTTAGTGATAA--------CTTCTACTTTTGCACTGCTATT---AAAAA-TGAAGGAGATG--
-----------AGCTATATGAGAAGATAGA--TGTTAGCTGAACTTATTGTAGTAATCATTTCACAATACAT--GTAACT
CAAACCATCATA---TACACCTTAAAC-TTATAGAGTAATTTATGCCA-TTATTTCTTAATAAAACTGAAAAAAAAA---
AAGAA-CTGGTGAGATG---AAA--GCTTTAAAAATAATAAAATAATATATTAGAGTCTGTT-TTAGATTTCCAA
>Canis_familiaris
TGTGAGACATCAAAATCCTTAGTGATAAGGATCCTTAGTGCACCTTTGCCCTGCTCTT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
AAAAA-TGAGTGAGATG---AAA--ACTTC--AAAAAATTAAACAATATGTTAGATTTTATT-TTAGATTTTGAA
>Felis_catus
TGTGAGTCACCAAAATCCTTGGCAATAA--------CTTGTACTTTGGCCTTTCTATC----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
AAAAA-TGAGTGAGATG---AAA--GCTTC--AAAAAATTAA-----ATGTTAGAATCTATC-TTAGATTTCTAA
>Manis_pentadactyla
TGTGAGTCATTAAAAACCTCAGTGATAA--------CTTCTACTTTTGTCTTGCTATT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
ACAAA-TGGGTGAGATG---AAA--GCTTC---AAAAATTAAATAATATTTTAGAGTCTATTCTTAAATTTCTAA
>Vicugna_pacos
TGTAAGTTATC-AAATCCTTAGTGGTAA--------CTTCTACTTTTGTGCTGCTATT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
AAAAA-TAGGTAAAATG---AAA--GCTTC--AAACAAT-AAATA--ATGTTAGAGTCTATT-TTAGATTTCTAA
>Bos_taurus
TGTGAGTCATC-AAATCCTTAGTGACAA--------CTTCTACTTTTGCCCTGCTATT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
AAAAA-GAGGTGAAGTG---AAA--ATTTC--AAAAAAT-AAATAATATGTCAGCATTTATT-TTAAATTTCTAA
>Uropsilus_gracilis
CATGGATCATCAAAATCTTTAGTGATAA--------CTTCTACTTTTGCCTTCCTATT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
AAAAA-TAGATTAAAAA---AAAAAGCCTC-------CTGGAAATGAATGTAAAGATCTAC--TCGGGTTTTTGA
>Sorex_araneus
TGTGAGTCATCAAAATCCT-AGTAATAAA------TCCTC-ATTTTTGTCCTGTTTTA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
GAAAA-TAGAGGAGGCA---GAA--GCTTT--GATAATTT---TACCCTTTTAGAGATTACGTTAGGTTTTTTGA
>Homo_sapiens
TGTAAGTCCTCTAAATTCT----------------------ATTCATGTCTTGATATT----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TAAAAATGAATGAGATG---GAA--GTTTC--AAAAATTTAAATGGTATATTGGAGTCTACT-TTAGATTTCTAA



Horse293_LINE

>L1MAB_EC
--------------------------------------------------------------------------------
TTTTTTTTTTTCAGTTTTATTGAGATATAATTGACATATAACATTGTATTATGTTTAAGGTGTACAACATAATGAT----
--------------------------------------------------------------------------------
---------------------------------------------
>Equus_caballus
CCCTGGAGTCTCCAGAAGGAACCAGTC-------TGGCCAACACCTTGATTTTAGCTCCA---TA-AAACTCCTTTT---
--------------CTCAATTGAGATATAACTGACATATAGCACTATATTAGTTTCAA-GTGTGA-TA-----------A
GACTCATTTTT---AGACTCTGACCTCCAGAACTCTAAGAG-AATA----------------------------------
------------------------AATTTGTATTGTTTTAAACTA
>Ceratotherium_simum
CCC--GAGTCTCCAGAAGGAACCGGC--------CTGCTGACACCTTGATTTTAGCTCCA---TA-AAACTCCTTTT---
--------------TTCAATTGAGATATAATTGACCCATAACATTATACTAGTTTCG-GGTATATGTA-----------A
GAATCAC-TTT---AGACTCTAATCTCCAGAACTCTAAGAG-AACA----------------------------------
------------------------AATCTGTATTGTTTTAAGTTA
>Condylura_cristata
CTCTGGGCTCTCAAGAAGGAAAGAGCC-------TTATTTATACCTTGATTTTAACTCCC---TG-AGACTCACTTT---
--------------TTAAAAAAACTTACCATTGACATATAGCATTATGTGAGTTTCA-GGTGTATGTA-----------A
GACTCAT-TTT---AGAGTCTCACTTACAGAAGGCTATTAGTAGTA----------------------------------
------------------------AACTCATGTTGATTCACATTA
>Solenodon_paradoxus
TCTTGGAGTCTCTAGA-GGAACTAGCC-------CTGAAGATATCTTGATTTTAATTCTT---ACAAGATTCATTAA---
---------------AAAACTGAAATATAGTTAATACATAACAACATATTAGTTTCA-GGTGTTTATA-----------C
AACTCAT-TGT---AGACTCTGACCTACAGAAACAT--GAG-AATA----------------------------------
------------------------AATTTGTGTTGTTTTAAGCTA
>Canis_familiaris
CCTTGGAGTCTCCAGAAGTAATCAGCT-------CTGTTGACACCTTGATTTTAGCTCTA---TACAGACTCAGTTT---
--------------------------------------------------------------------------------
--------------AGATTGTAGCCTCTAGAACTGTAAGGA-AATT----------------------------------
------------------------AATTTGTATTGTTTTAAGCTA
>Ailuropoda_melanoleuca
CCTTGGAGTCTCCAGAAGGA--CAGCT-------CTGTGGACACCTTGATTTTAGCTCCA---TAGAGACTCAGTTT---
--------------------------------------------------------------------------------
--------------AGACTGTGGCTTCCAGAACTCTAAGAA-AACTCTAAGAAAACTAAAAAAGAAAACTCTAAGAAAAC
TAAAAGCTAAAAAAAAAAAAAAAAAGCTAAAGCTGTTTTAAGCTA
>Manis_pentadactyla
CTCTGGAGTCTGCAAAGGAAGCCAGC--------CCCCTGGCACCTTGACATTAGTTCCA---TC-AGACGGATTTT---
--------------------------------------------------------------------------------
--------------AGATTTTGACCTCCAGAACTCTATAAG-AATA----------------------------------
------------------------AGTTTGTGTTGTTTTCAGGTA
>Sus_scrofa
CCTTGTAGTTTCCAGAAGGAA-CATTG-------ATGCTGATACCTTGATTTTACCTCCA---TT-AGACTCATTCT---
--------------------------------------------------------------------------------
--------------AGATTTTGACCTCCAGAACTCTAAGAG-GATA----------------------------------
------------------------AGTT-------------GCTA
>Tursiops_truncatus
CCTTGGAGTCTCCAGAAGGAATCAGTA-------CTGCTGACACCTTGATTTTACCTCCA---TA-AGATTTATTTT---
--------------------------------------------------------------------------------
--------------AGATTCTAAACACCAGAACTCTAAGAG-AACA----------------------------------
------------------------AATGTGTATTGTTTTAATCTA
>Desmodus_rotundus
CCTGGGAGCTTCCAGAAGGCACCAGCCACCAGCACAGCTGACATCTTGAGTTTAGTTCCA---TA-AGAATCATTTT---
--------------------------------------------------------------------------------
--------------ATACTCCAACCTGTAGAACTCTAAGAG-AATA----------------------------------
----------------------------------------AGCTA
>Rousettus_aegyptiacus
CCTCGGAGTTTCCAAAAGTCAGCAGCC-------CCACTGACGTCTTGATTTTAGCTCCA---TA-AAACCCATTTA---
--------------------------------------------------------------------------------
--------------AGACTTTGACCTCCAGAGCTCTAAGGG-AATA----------------------------------
------------------------AATTTGTATTGCTTTAGGCAA
>Homo_sapiens
CCC-AGAGCCTCCAGAAGGAGACAGTC-------CTGTCAACATCTTGATTTTAGCTCTT---TA-AGACTAAGTTA---
--------------------------------------------------------------------------------
--------------GGACTCTGACCTCAAGAACTCTAAG-G-AATA----------------------------------
------------------------AATGTATATTGCTTGAAACTA



Horse294_LINE

>L1MB3_EC
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------AAAAATGGTTAAGATGGTAAA-TTTTATGTTATGTGTATTTTACC
ACAATAAAAAAAA-------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------
>Equus_caballus
ACCACC-TGAGGGCCGGAGAAACAAAATG---------------------------------------------------
-----------------------------------------------------AAGAA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--GTCAGTACAGTATTACC----------AGA-----------------TGGTAAATTTTTATGTTACATGTATTTTAAC
ACGATAAAGAAAACTAAGGGAA----AAAA----CTC-AGA---AGCTT-AGA---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------GGA--AGGGC--TGCAAAGCTGAAAA--------TCAGACCA-----------------CTCTGCT
>Ceratotherium_simum
ACCACC-TGAGGGCTGGAGAAACGAAAGG---------------------------------------------------
-----------------------------------------------------AAGAA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--GGTAGTACAGTATTACT---AAAACTTAGA-----------------TGGTAAATTTTTATGTTATATGTATTTTAAC
ATAATAAAGAAAATTGAAAAAGA---AAAA----CTT-AGA---AGCTC-AGA---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------GGA--AGGGCTCTGCAAAGCTGAAAA--------TTAGACCACTGACGAGGGGGCACTGCTCAGCT
>Condylura_cristata
AGCCCTCTGAGTGCTGGAGACACAAAAGA---------------------------------------------------
-----------------------------------------------------GAGAA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--ACT-----GATTTTACT---AAAATTTCAA-----------------GGG--AATTTTTATG-----TGTATCTTAAC
ACAATAAAGAAAGTGGAATTTT----AAAA----CAT-AGA---GGCTT-GGA---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------GGA--GGGTC---------CTGAAAA--------TCAGAGCACCAGGGAGGGGCAGTTACTCAGCT
>Uropsilus_gracilis
ACCACCCTGAGTGCTGGGAAAACAAAAGA---------------------------------------------------
-----------------------------------------------------CAGAA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--ATT-----GGTCTGATT---AAAACTTAGT------------------GGTAAACGTTCATGTAATGTGTACTTTAAC
ACAGCAGAGGAAATGGAATTT-----AAAA----CAAGAGA---CACTT-GGAACACTCTTACACTGCTGGTAGGAATGT
AGACTGGTCCAACCACTATGGAAAGCTGTGTGGAGGACCCTCAAGCTACTGAAAATGGAGCTACCATTTGACCCAGCAAT
CACTTTTCTAGGAATCTACCCAAAAGAAACCTCAGTACTTATACAAAGGGATACCTGTGCTCAGATGTTTTCTGCAGCAC
TATTTATAATTGCAAGGACATAGAAACAACCCAAATGTCCTAAGACAGATGAATGGATGAAAAGGATGTGGTATATATAC
ACAATGGAATATTGCTCATCAATTAAAAATGACAAGTTTGGTGAATTTATAAAAACATGGATTACCTAGAAAAATCATTT
TAGCAGAACAAAAAAAAAAAACAAATGATTTCACTAATCTATGGGATATAGGAAAAATAAGCGAAAGGCCAGGAGGAAAA
GTCCAAACAAGCTAACAATCAAACTAAAGTACACAACTGGGGGGGAGGAGTGGAGATGGGAGGGAGTGGTCAGGGAGGGG
TGGTGGTGGATAAACCCCAGGGAAAACAAAGATGTAAAATACATATATTAAAAAATTATTTTAAAATAAATAAATAAAAC
GGGAGATGCTTGGATGAGGGCTCTGCAAAGTTGAAAA--------CCAGA------------AGACACTGCTCAATT
>Mustela_putorius_furo
ACCAACCCGAGGGCTGGGGAAACAAAGGG---------------------------------------------------
-----------------------------------------------------AAGAA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--GTT-----GGTATTATT-------------------------------------------------------------
--------------------------AAAA----CTC-AGA---AGTTT-AGA---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------GGA--AGGGCTCCACACAGCTGAAAA--------TCAGCTCTCTGAGGAGCTGCCCCCCCTGGGCT
>Ailuropoda_melanoleuca
ACCACCCCGAGGGCTGGGGAAACAAAGGG---------------------------------------------------
-----------------------------------------------------AAGAAGTTGGTACTGGGGCACCTGGGT
GGCTCAGTTGGTTAAGCATCTGCCTTCGGCTTGGGTCATGATCCCAGGGTCTTCAGCAGGGAATCTTCTTCTCCCTCTCC
CTCTGCCTGCCCTCTCTCTCTCTCCCCCCTCTCTGTCAAATAAATAAATAAAATCTTGAAAAAAACAAAAGAAGAAGATG
ATGTT-----GGTATTACT-------------------------------------------------------------
--------------------------GAAA----CTT-AGA---AGTTT-GGA---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------GGA--CGGGCTCTGCACAGCTGAAAA--------TCAGCCCTCTGAAGAGCCACCACTGCTGGGCT
>Manis_pentadactyla
ACCACCCTGAGGGCTGAGGAAACGAAGGG---------------------------------------------------
-----------------------------------------------------AAAAA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--GTT-----GATATTTTT-------------------------------------------------------------
--------------------------AAAA----GTT-AGA---AGCT--GAA---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------GGA--AGGGATCTGCAGAGCTGAAAA--------TCGAACCTCAGAAGAGCCTGCACTGCTTAGCT
>Sus_scrofa
ACTACCCTGACGACTGGAGAAACAAAA-G---------------------------------------------------
-----------------------------------------------------AAGAG----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--GCT-----GGTACTATT-------------------------------------------------------------
--------------------------AAAA----CTC-AGA---AGCTT-GGA---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------GGA--AGGGCTCTGGAAAGCCAAAAA--------GCAAACATCTAAGGAGCAGGCACTGCTCAGCT
>Bos_taurus
ACCATCATGAGGACTGGAGAAAC-AAGGG---------------------------------------------------
-----------------------------------------------------ACAAA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--GTT-----GGTACCAAT-------------------------------------------------------------
--------------------------AAAA----CTT-AGA---AGCTA-GGA---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------GAA--AGGGCTCCAGAAAGCTGAAAA--------GCAGACTTCTAAGGAGCAGGCACTACTTGTCT
>Myotis_myotis
ACCACCTGGAAAGCCAGGAAAACAAAGAA---------------------------------------------------
-----------------------------------------------------AAGAA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--GCT-----GGTAGTTTT-------------------------------------------------------------
--------------------------GAAGGGAGTTT-AGA---AGCTT-GGA---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------AAA--AGAGTTCTACAAAGCTGAAAA--------TCAGACCT-----------------CAGGGCT
>Rousettus_aegyptiacus
ACCACCCTGAGGGCTGCAGAAACAAAGAGAAGTTGGCGGCTTGCTTGATTTATTTATTTTATTGAGTTATTTATTTTTGG
CATTTTGTGATGAAACTTACTATTTTGTTTAAATTTCATTTACTTTGTTTTACTAGAA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--GTT-----GGTGTTTTT-------------------------------------------------------------
--------------------------AAAAGGAATTC-AGA---AGCTT-GGA---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------GGA--AAAGCTTTACAAAGCTGAAAA--------TAAAA-----------------------GGCC
>Cavia_porcellus
AGCACG-TCAGGACAAGGGAAACAAAGGA---------------------------------------------------
-----------------------------------------------------AAGAA----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--GCT-----GGCACTATT-------------------------------------------------------------
--------------------------AAAA----CTC-AGA---AGCATAGGA---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------AA--AAGAC--TGCAAAGTTGGAAACTGAGAACTTAGACCTCTGATCAGGGAGCACAGCACAGCT



Horse299_LINE

>L1MAB_EC
--------------------------------------------------------------------------------
------------------TTTTTTTTTTTCAGTTTTATTG----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------AGATATAATTGACATATAACATTGTATTATGTTTAAGGTGTACAACATAATGATTTGATATATGTATAT
ATTGTGAAATGATTACCACAATGAAGTTAATTAAC--ACATCCATCACCTCACATAGTTACAA-----------------
--ATTTTTTTTTTGTTTKTGTGATGAGAACTTTTAA--------------------------------------------
----------------------------
>Canis_familiaris
TCCTT-AAGAGTGAT--------CATTTTAGGTTCAGGAGATC----AG--------------TTCTCAAACGGTAAA--
-TT-----TTATTTT---------TTTTCCAGTTTTACCG----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------AGATGTAATTGACATACAGCACTATG-TCCATTCAAGGTGTACAGCACAACTACTTGACTGA--CTGAC
ACTGTGCGATGATCACCAGAGTAAGTTTAGTTG----ACGTCCATCGTCCCAAATAGGTACCAAAAAGAGAAAAAAGAAA
--AGTTTGCTTTC---CTGGTG-----------------TT---AAAG---CCATTTTAATAAGGTTCTCTCTAGAATGG
TAGGT-------TTTGATTTAA---CAC
>Felis_catus
TAATT-GAGAGTGAT--------AAATTTGAGTATGGGAAATT----AG--------------TTCCCAAATAGCAAA--
-TAAAAG-CTATTTT------GTTTTTTCCAGTTGTACTG----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------AGATGTAATTGACATCCAGCACTGTA-TAACTTCGAGGTGCACAGCATAATTATTTGACCGA--TTTAT
ACTGTGAAACGATCGCCACAATAAGCTTAGTTAATTAACATCCATCATCTCCTGTAGGTACCGAAAAGGGAGAAACAAAA
GGTTTTTTTTTTTTTCCTCTTGAG---------------TAAAGAAAG---CTGTTTTAATAAGGTGTTCTCTAG-AAAG
TCGGT-------TTGGATTTAA---CAT
>Manis_pentadactyla
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------------NNNNNNNNNNNNNNN--
-NNNNNNNNNNNNNN------NNNNNNNNNNNNNNNNNNN----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAT
ATCGTGAAATGGTTGCCACA--TAATTTAGTTA----ATGTCCATCATCTCATATAGATACAAAAAAGAGAAAAAGAAAA
AGAATGTTTTTTT-TCTTTGTG-----------------GG---AAAC---CTATTTTAATAAGGTATTCTTTAGAAAAG
TAGGT-------TTTGATTGAAAAACAT
>Sus_scrofa
TAGTT-AAGAATAATGTATTT--CAGTTTAAGTTCAGGAAATT----AG--------------TTCTTAAATGGTAAA--
-TTAAAAACTATTTT------------TTCAGTTTTACTG----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------CAATATAACTGACATATAGCATTGCA-TAGATTTAAGGTATGCAGTGTAATTATTTGACTTA--CATAT
ATTGGGAAATGATTACCAAAACAAATTTGCATA----ATATTTATCATCTTATATAGATACAAAAATGAGGAAAAGAAA-
--AATATATTTTT-----TATG-----------------TA---AAAA---CTATTTTAACAAAGTGTTCAAATAAAAAG
TAGAT-------TTTGACTCAACTCCAT
>Bos_taurus
TAGTT-ACAAATAAT--------AGGTTTAAGTTCTGGAAATT----AG--------------GTCTTAAAA--TAAA--
-TGCAAA-CTATTTT-----------TTTCAGTTTTATTG----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------TAATATAATTGAAATACAGCATTGTG-TAAGTTTAAGGTACGCAGCATAATTATTTGGCTTG--CATAT
ATTGCGAAATGATTGCCACAATACATTTACTTA----ACATCCTTCATCTCATATAGATGCAAAAAAGAGAAAAA-----
--AGTGTTTTTTTCTCCTTGTG-----------------TA---AAAG---TTATTTTACTAGGATGTTCTCTAA-AAAG
TAGGT-------TTTTATTTAATG-CAT
>Equus_caballus
TAGTT-AAGCGCAGTAAATTT--AAATTTAAGTTTTGGAAATTTTTTAG--------------GTATCAAATGGCAAA--
-TAAGGG-CTATTTT---------TTTCCCAGGTTTATTGAGATTGTAGGGGAGGAAGACATTTCCTCTACCTGCTCTGG
GTTCTTCTGGGCAGAGAACAAATTAAATTCAAGAGACAGAATAACAGGAGAAAATTAAACAAAGCTTTATAACATGGATA
CATGGGAGAGGCTCAGGCAACCTGAGCACTTGCCAAAATGGCTGAAGCCACCACCTTAAATATCATCTTCAGCTAAAGGC
AAAGGAGGATGTTGGGGGTGGAGGGGTAGTCAGTCATGGGAGATTACCACACAAGTAAACAAGTGTTAGGTTATTATGCA
GACTTGAGTCCTTGCCTTCTGCATTGGTAAGAGTTTCTAGAGATAAGGTCATCACTCCTTCCTGGTACAGAGAGGGTCAC
CTTTACCGATGGAGCTTTCCTTTAAAATGTAAATGTCTCTTAACAAAGGGTAAGTAAATTCTACTTTTCAGAATTTCTTT
CCTGTCTGCAGTTTTTCAAAAAGTAACCAGCCCCAATTAATCCTCATGCCAAAGAGACTTATCTTGGGGTGGCCAATTCC
AGTCCCCCACAAGATCTAATTGACACACAGCACAGTA-TAACTTCAAAGAATACAGCATAATGATTCGACTTA--CATAT
ATTGTTAAATGATTACCACAATAAATTTAGTTA----ACATCCATCATCTCATATAGACAGAAAAAAGAGAAAAAGAAAA
ATTGGTTTTCTTT-TCCCTGTG-----------------TA---AAAG---CTATTTTAATAAGGTGTTCTCTAG-AATG
TAGAA-------TTTGATTTAA---CAT
>Tapirus_indicus
TAGTT-AAGAGTAGTTAATTT--AAATTCAAGTTCAGGAAATTAGTCAG--------------TTCTCAAATGGTAAA--
-TAAAAG-CTATGTT-----------TCCCAGTTTTGTTG----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------AGATATAATTGACATACAGCACTGTA-TAAGTTTAA-GTGTACAGCATAATTATCTGACTTA--CATAG
GTTGTGAAATGA----------------AGTTA----ACGTCGGTCATCTCATATAGATACAAAAAAGAGAAAAAGAAAA
ATAATTTGTTTTT-ACCTTGTG-----------------TA---AAAG---CTATTTTAATAAGGTGTTCTCTAG-AAAG
TAGGT-------TTTGATTTAA---CAT
>Miniopterus_natalensis
CAGTTAAAGAGCAATACATTT--AAATTTAAGTGGGAGAGTTCAATTAG--------------CTCTCAAATGGTAAA--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------TA---ATAG---CTA-TTTAATAAGGTGTTTTCTAG-AGAG
GAGGT-------TTTAAC--AG---TAT
>Rousettus_aegyptiacus
TAATTAAAGTGTAAGAAATTT--AAGTTTAAGTTGAGGAGGTT----AG--------------TTCTCAAGCAGTAAA--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------TA---AAAG---CCATTTTAATAAGGTG-------------
--GGT-------TTTAAC--AA---TGT
>Condylura_cristata
TCAATAAAGAAAAATACATTT--AAAATTAAGTTGGGGAGATTAGCTAGGAGAGTTTAGTTATTTCTTAAA---TAG---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------TA---ATAG---TTACCTTATTAAGGTGTTTTTGAG-AGAA
TAGA--------TTTGATTTAGCAACAT
>Erinaceus_europaeus
TTGTTCAAGAACAACACATTTTAAAATTGGTGTCAAAGAATTT----TG--------------CTATCAAATGACACA--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------TA---AAGA---CTCTGTTAACAAGATATTTTCCAG-AAAG
TGAGTTGATAAGTGTTGCTTATCAACAT
>Homo_sapiens
TACTC-AAGAGTCATAAATTT--AAATTTAAGTTAA---ACTTA---AGACGGGAAGA-TTGCCTCTTAAATGGTAAA--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------TA---AAAC---CTATTTTAACATGGTGTTTTCTAA-AAAG
TAGAT-------TTTGCTTTAA---TAT



Horse301_LINE

>L1MAB_EC
--------------------------------------------------------------------------------
----------------------------------------------------------------TTTTTTTTTTTCAG--
------------------------TTTTATTGAGATATAATTGACATATAACATTGTATTATGTTTAAGGTGTACAACAT
AATGATTTGAT-ATATGTATATATTGTGAAATGATTACCACAAT-GAAGTTAATTAACACATCCATCACCTCACATAGTT
ACAAATTTTTTTTTTGTTTKTGTGATGAGAACTTTTAAGATCTACTCTCTTAGCAACTTTCAAATATACAATACAGTATT
ATTA----------ACTATAGTCACCATGCTGTACATTACATCCCCAGAACTTATTCATCTTATAACTGAAAGTTTGTAC
CCTTTGACCA----------ACCTCTCCCTATTTCCCCCAC-CCCC-----------CAGCCTCTGGCAACC-ACCAATC
TATTCTCTGTTTCTATGAGTTTGGTTTTTTTTTTTTAGATTCCACA----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------
>Canis_familiaris
TTTTTTGTTTTGATATAATTTCAAGCTTACCGGGAAAAATTACAAAG---------------------------------
--------------------------------------TTT----TTTTCCCCACCTCTAAATGATGGATTTACT-----
-----------------TTTCTTTTTCTATTGAGGTATAATCGACACACAACATTACATTC------AAGTGTGCAACGT
AACGACTCCAC-GTTTGTATATATT-----ATGATCACCACACA------CAGTTA-CACGTTTTTATTCCTTTTTTTTT
TCACATTTTTTTTTTCT---TGTGACGAGAGCTTTTAAGACCTACTCTCATAGCAACTTTCACATCTGCAACATGGGATT
ATTA----------GCCGTAGTCACCACGCTGTACCTGACATCCTCAGGAGCTACT-ATTGTGTAACTGGAAGTTTGTAC
CTTCTGACCCCGTCCCCCAGCCCCCACCC-GTCTCCCCGACCTCCTCACC-------CCTGCTTTGGCAACC-ACCAGCC
TGTTCTCTGTATGTGTGAGCTTGGTTTTTCCTAAG--------------GGGAATTCCCATAATACTCTTT---CCC---
------------------------------------------------------TAGATTCACCAAGTGTTCACATT---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------TTAACCCACCTGCC-TTATCAAATT
>Felis_catus
TTTTTCGTTTTGATCTAATTTCAAACCTAC--AGGCAAGTTACAAAA--------------------------CA-----
--------------------------------------TTG----TTT---TCATCTCCAGGTGATGGATTTATTCAGTC
AGCTACTTTT----------CTTTTCTTATTGAGGTATAACTGACATACAACATTATATTC-ATTTCAGGTGTACAACAT
AATGACTCCAC-ATGTGTATATATTACGAAATGATCACCCCAGT-AGGTCTGATTA--GCACTCATCACTACACATAGGT
CCA-----CCTTCCTTT---TCTTATGAGAATTTTTAAGATCTACTCTCTTAGCAACTTTCAAATATGCAACACAGTATT
CTTA----------ACCATAGTCACCATGCTGTACATTACATCCTCGTGCCTTACTTATTTTGTAACTGGAGGTTTGTAC
CTTTTGACCC----------CCTTCACCC-ATTTCACTTACTTCCCCACCCCCTACCCCACCTTTGGCAACCAACCAATC
TGTTCCCTGTATGTACGAGCTTGGTTTTTCCTATG--------------AGGAATTCCCATAATGCTCTTT---ACC---
------------------------------------------------------TAGAGTCAGCAACTGTTTACATT---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------TTAACCCATCTGCC-TTATCAATTT
>Manis_javanica
TTTTTTGTTTTGGTATCATTTCAAACTTAC--AGAAAAGTTGCAAAAATAGTACA---AGGAATTCCCAGACACAC----
--------------------------------------TTT---TTTTTCTTCATCTCTAGGTGATGGATTTGTTCCATC
AACAAATTTTTTTTTTA-----------ATTGAGGCGTAAATGACATACAGCATTGTATTT-GCTTCAAGGGTATGACCT
AATGATTCAGT-ATTTGTATATATTACAAAATGATCACCACAGTCAAGTCTAGTTA--ACACCCATCACCATACATAGTT
ACAAA----TTTTTTCT---TCTGATGAGAACTTTAAAGATCTACTCTCTTAGCAACTTTCAAATATGCAATACAGTATT
AACACTGTATAAATATTATAGTCACCATGCTGTATA-CACATCTTCATGACTTGTTTACTCTATAACCAGTAATCTGTAC
CTTTTGACCC----------CCTTCACCA-ATTTTGCCAACCCC-------------ACACCCCTGGT-ACC-ACCAGTC
TGTTCTCTGTATCTCTGAGCTCAGTTTTTCCTG----------------AGGAATTCCCAT-ATACTCT-----ACC---
------------------------------------------------------TGGATTCACCCAAGTTT---GTT---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------TTAATCCACTTGAC-TTATCAATTT
>Sus_scrofa
TT----ATTTTGTTATAACTTCGAATGTGC--AGAGAAGTTGCAAAAAGAGTACA---AGGAATTCCCACATACTGTTTT
TTGGTTCGTCTCTCTCTCTCTCTCTCTTTCTCTCTCGCTTT----CTCTCTCTCTCTCTCTGTGATAGGTTTATTCCAT-
---TATTTTCATTTTCTTC-CTTTTTAAGTTGAGGTAAAACTGACAT-----GTTATCCTA-GGTTCAGGTGTGCAATAT
AATTATTCAATAATATGTCTATATTACAAAAGGATCACCACAAT-AAGCC---ATA--ACATCCATCACCACACACCGTT
ACAAAAAAG--TTTTCT---TGTGGTGAGACATGTTCAAAT---CTTTCTCAGCAACTTCCAGCTCTGCAATAGAGCGTT
ATTA----------ACTACAGTCGCTGTGCTATATAGCACAGCCTCATGACTTATTTATTTTATGACTGGAAGTTTGTAT
TTTTGGGCCC----------C---------ATTTCACCCAC-CACCCACCC------TCGCCTCTGGT-ACC-ACCGATC
TGGTCTTTGAATATAAGGGTTCCGTCTTTTCTATG--------------AGGAATTGCCAT-ATACTTTTT---ACCTTG
GTTCGCCAACTTTTTTTATTTTTTATTACTGTTGATTTACAATGTTCCGTCCATTTGATTCACCAACCATTTACATT---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------TCAACCCATTTGAC-TTATCAATTT
>Tursiops_truncatus
TT----GTTTTGATATAGTTTCAAACTTAC--AGAAAAGTTGCAAAACTAGTACA---AGGAATTCCCATATACTC----
--------------------------------------TTT----TTTAAAAAATCTCTATGTGATGGGTTTATTCAGTC
AGCTACTTTCATTTTCTTC--TTTTTAAAATGAGGTATAATTGACAT-----ATTGTATTA-GTTTCAGGTGTACAATAT
AACGATTC---------------------------------AGT-AAGTCTAGTTA--ACATCCATCACCACAC--AGTT
GCAAACATTTTTTTTCT---TGTGGTGAGAACTTTCAAGATCTACTTTCTTAGCAACTTTCAAATATGCAATACAGTATT
ATTA----------ACTGTGGTCACTACGCTGTACATCACCTCCTCATGACGTATTTATTTTATCACTGGAAGTTGGTAC
TTGGTGACCC-----------CTTCACGC-ATTTTGCCCAG-CCCCCATCCCTGCTTCTGCCTCTGGC-ACC-ACCAGTT
TGTTCTCTGAATATATGAGTTCAGTTTTTCCTGTG--------------AAGAATTGCCGT-ATACTCTTT---ACC---
------------------------------------------------------TAGATTCACCAGCTGTTTACATT---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------TTAACCCATTTGAC-TTATCAATTT
>Equus_caballus
TTTTTGGTTCTGATATAATTTCAGACTCAC--AGAAAGGTTGCAAAAATGCTACA---ATGAATTCCCGTATACTC----
--------------------------------------TTT----T------CATCTCTAGGTGATGGGTTTATTCAGTT
GGCTACTTTTGCTTTCTTCTTTTTTTTTACTGAGGTATAATTAACATACAACATTATATTA-GTGTCAGGTGTACAACAT
AATGATTCTAT-ATTTGTATATATTATGAAATGGTCACCACAAG-AAGTCTACTTA--ACATCCATCACCACACAGAG-T
ACAAAA--TTTTTTTCT---TGTGATGAGCACGTTTAAGATCTACTCTCTTAGCAACTTT-AAATATGCCATACGGTATT
ATTA----------ACTATAGTCACCATGCTGTACGTTACATCCTCATGCTTTATTTATTTTGTAACTGGAAGTTTGTAC
CTTTTGACCC----------TCTTCAGCC-ATTTCGCCTATCCCCCCACCC------CCATCTCTGGCAACC-ACCAGTC
TGTTCTCTATATCTATGGGCTTGGTTTTTCCTATG--------------AGGAATTCCCAT-ATACTCTTT---AGC---
------------------------------------------------------TGGACTCACCAAGTGTTTACATT---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------TTAACCCATTTGCC-TTATCAATTT
>Ceratotherium_simum
TTTTTTGTTTTGATATAATTTCAAACTTAT--AGAAAAGTTGCAAAAATAGTACA---AGGAATTCCCATACACTC----
--------------------------------------TTT----TTT---TCATCTCAAGGTGATGGGTTTATTCAGTC
TGCTACTTTTGTTTTCTTC-TTTTTTTTACTGAGCTATAATTGACAT---TCATTGTATTA-GTTTCAGGTGTACAATAT
AATGATTCTAT-ATTTGTATATATTACAAAATGGTCACCATAAT-AAGTCTAGTTA--ACATCCATTACCACACATAGCT
ACAAA-ATTTTTTTTCT---TGTGATGAGAACTTTTAAGGTCTACTCTCTTGGCAACTTTCAAATATGCAGTACAGTATT
GTTA----------ACTGTAGTCACCATGCTGTACGTTACAGCCCCAGGACTTATTTATTTTATAACTGGAAGTTTGTAC
CTTTTGACCC-----------CTTCACCC-ATTTCGCCCA--TCCCCACCCC-----CCACCTCTGGCAACC-ACCAGTC
TGTTCTCTGTATCTATGAGCTCAGTTTTTCCTATG--------------AGGAATTCCCAT-ATACTCTTT---ACC---
------------------------------------------------------TAGATTCACCAACTGTTTACATT---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------TTAACCCATTTGCC-TTATCAATTT
>Miniopterus_natalensis
TATTTTGTTTTGAAATAATTTCAAACTTAC--AGAAAAGTTGCAAAACTAGTACA---AGGAATTGCCATATACAC----
--------------------------------------TTT---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------ACC---
------------------------------------------------------TAGATTCACCGACTATTCACATT---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------TTAACCCATTTGCCTTTATCAATTT
>Rousettus_aegyptiacus
TTTTTTGTTTTGAAAAAATGTGAAACTTAC--AGAAAATTTGCAAAGCTAGTACA---AGGAATTGCCATATGCTC----
--------------------------------------TTT---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------ACC---
------------------------------------------------------TAGACTCACCGACAGATCACATT---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------TTAACCCATTTGCC-TCATCCATTT
>Condylura_cristata
TTTTATGTTCTGTC---TTCTCAGCCCTTT--AGAGAGGTTGCAAAGATAGCACA---AGCCGTTCCCGTGTACGC----
--------------------------------------TTT---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------CCC---
------------------------------------------------------CACATTCACC-CCTGCTCACTTG---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------GGAACCCATTTGCC-ATAGCCATTT
>Erinaceus_europaeus
TGTTTTCTTTTGAT---ATTTCAAATTTAT--AGAAAGGCTACAAAAAATAGTCA---AAGGATTCCTATATTCTC----
--------------------------------------TTA---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------ACC---
------------------------------------------------------TATATTCATCAACTACTCACAAGTTA
TTTACTTTTTAAAGATGTATTTATTTCATCTGAGATGAGAGACAGAGAGATAGAGGTAGAGATAGAGAGATGCCTGGTAC
AAGGGACACCAAGAGCCTCAGGCATGAAAGTTTTATGTTCTACCAGATGGCCAATATTCACATTTTAAAAAATATATTAT
TTTTTTAATTTAATGAGAGAGAGAGAGAGAAAGAGAGAGAGATGGAGAGAGACCAGACTACTCTCAACTCTGGTTTATGG
TGGTGCTTGGTATTGAACCTGGGACTTTTGAGACTCTAGCATCAAAGTCTTTTGCATAACCATTATGCTGCCTCCCTAGC
CCCATATTTGCATTTTAAATCA-TTATC-TTATCACTTT
>Homo_sapiens
ATTTTTTTAAAATCATAATTTCAAACTTAC--AGAAGAGTTGCAAAAGTAGGACA---AGTAATTCCTATATCCTT----
--------------------------------------TTC---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------AC----
------------------------------------------------------TTGATTCACCAACAGCTTACATT---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------TTCACCCATTTGCT-TTGTTATTCT



Mole2_LTR

>ERV54-EC_LTR
----------------------------------------------------------------TGTTAAAAAACAAAAT
TCAACTGAGTAAATTTTAAAGATCTTATTGGCTTTATTCAATGATTCATGAATTGGGCAGCATCCAATCTAGC----AGA
TAGAAAGGAGCTCCGAGGAGCTGTAC-AAAAT--------GAAAGACTTTTATAGGCAGAAGGGAGCAGGAACAAGGAAG
TTAT-ACTAGGCAAAAAAGTG-GATTGGTTATTGCAAGGTTACTTTCCTT-TAGGGGATGGCAGGGGTCTATCAGGCAGA
TTACCTAACTAGTGCTGATCAGGTGATTCCTGATTGACTGGTTTAAGATTCCATTTCTGGGAGAGCCGAAACTGTAATTA
AGTTAAGTCTCGGTTTGGTGACGTGGGGCTTAGCATAAGTGACTCCATTTTGGGCCTGTTGTCTTGTTTTTAACA-----
-------------------------------------------------------------
>Canis_familiaris
CTACGGTTTCCTAG-TAAGCCCAATGACATAACGTTTCATATATGATGATATAT---AATA---TGTTAAAAAACAAAAT
ACAGCTGAGTACATTTTAAAGGTCTTATTGGCTTTATTCAGCAATTCACTAATTGGGCAGCATCCAATCTAGT----AGA
TAGATAGGAGCGCCAGGGAACTACTC-AAGGC--------AAGAGA-TTTGGTAGGCAGGTGGAGGCAGGAACAAGGAAG
CTGTAATGAGGCGGA--AGTG-AGTTAGTTATTTCAAGGTTACTTTCCCTAGAGAGGATAGCAGGGGTTTCTCAGGCAAA
-CACTTACCTGATGCTCATCAGGTGATTCCTGAT----TAGCTTAAGATTCCATTTCTGAGAGACCCGAAG-TGTAATTA
AGTGAGATCTCAGTTTGGTGACATGGGGCTTAGAATAAGCTACTCAATTTAGGGCTTGTTGCCTTCTTTTTAACA---AA
TA---TTATCTCATATAAAGCTGGTGTTATCATTACTTCCGCTTTTACTCTGGAAGAGACT
>Felis_catus
CTATGCTCTTCCTA-TAAGACCTATGACATGATGTTTCAAATATGAT---------------------------------
-------------------AAGACTTATTGGTTTTAGTGAGCAATTCATGAATCAGGCAGCATCCAATCTAGC----AGA
TAGATAGGAGGTCCAAAGAGCTCTAC-AAGGC--------AAGAGA-TTTGGTAGTCAGAAGGAAGCAGGAACAAGGAAG
CTGT-GCTAAG--GGGAAGTG-AATTGGTTATTTCAAGGTTACTTTCCATAGAGAGGATGCCAGGGGTTTCTCAGGCAAA
-CACCTACCTAATGCTGATCAAGCGATTTCTGGTTGTCTGGCTTAAGATTCTATTTCCGTGAGACCCCAAACTGTAATTA
AGTTACATCTTGGTTT-GTGACATGGGGCTTAGCATAAGCTACTCAGTTTAGGGCCTGTTGTCTTATTTTTAACA---AA
------TATCTCATATAAAGCTGATGTTATTATTATCTCCATTTTTACTGTTGAAGAGACT
>Manis_javanica
CTATGCTTTCCTAATTAAGAGCTATGATAGAATGTTTCAAATA-AATGATATGT---AATC---TATCAGAAAACAAAAT
TTAACTGAGTAAATTTTAAAGATTTTACTGGCTTTTCCCAGTATTTTACAGACGGGGCAGCATCCAGTCTACCCAAGAGG
TAGGAAGGAACTCCAGGGAGTCACACAAAGGC--------AAGCGA-TTTTGCAGGCAGAAGGCGACAGGAACAAGG-AG
CTGC-ACCAGGCTAAAAAGCA-GATTGGTGATTGCC-GGTCACTTTCCCTAGAGCGGGTGGCCGGGGCTTATCAGGCATG
-GACCTAACTAATGCTGATCAAATGATGCCCAATTCACTGGTTTAAGATTCTGTTTCTGGGAGACCCAAAATCGTAGTC-
ATTTAAGTCTTGGTTTAGTGACATGGGTTTTAGGATAAGAGACTGCATTGGAGGCCTATTG-----TTTTTAACA---AA
TA---CTATCTCATACAAAGCATAAGTTTTCATTAGCTCCATTTTTACTGTTGAAGAGACT
>Condylura_cristata
TTATGCTCTA-----TAAGAGCCATGACATAATGTATAAACTATAATGATATGT---AATA---TATT-GAAATCTAAAT
TCAACTGAGTTT-------AAGCATTATTGGCTTTATTTAGTCATTCATGGCTTGGATAACATCCAACCTAAA--AGAGA
TAGAAGGGAGCTCAGAAGAGCTTTACAAGGGAAGGGGTGGAAGGGATTGTTATTGGCAAATGGAA--AGGAACAAGAAAG
TTAT-ATGAGACAAACTAGT----TTGACTAATGCAGGGTTACTTTCCCTAGAGGAGATGGTAGAGGGGTGTCAGGCAGA
TGATTTAAACCATGTTGATCAGGTGATTCTTGGTTGACTGTTTTAAAATTCCATTTATGGTA-ACCCAAAACTGTTATCA
AGA------ATAACTTGGTGACTTGGGGCTTAGAATTAACAACTTCATTTTGGAAAATGTGCC-TATTTTTAACA---AA
TA---TTATCTTATACAAAATTAGTGCTGTTATTATTTCTATTTTAACTATTAAAGAGAAT
>Scalopus_aquaticus
TTATGCTCTCTTTA-TAAGAGCCATGGCATAATGTATCAACTATAATGATATAT---AATA---TGTT-GAAACTCAAAT
TCAACTGAGTATATTTTAAGCATTTTATTGGCTTTATTCAGTCATTCATGACTTGGATAGCATCCAATCTAGG----AGA
CAGAAAGAAGCTCAGAAGAGTTTTAC-AAGGC--------AAGAGATTTTTCTTGGCAGAAGGGAAAAGGAATGAGAAAG
TGAT-ATGAGACAAAACAATATGTTTGACTACTGCAGGGCGAATTTCCCTAAAGGAGATGGTAGGGGATTGTCAGGCAGA
CTACTTAAATAATGTTGATCAGGTGATTCTTGATTGACTGGTTTAGGATTCCATTTCTGGGTTACTCAAAAC-----TTA
AGT------TTAACTTGGTGACTTGGGGCTTAGAACAATCAACTTCATTTTGGGAAATGTGCC-TATTTTTAACA---AA
TA---TTATCTCATACAAAAT-AGTGCTGTTATTATCTCTATTTTTACTGTTGTAGAGAAT
>Sus_scrofa
CTTTGCTCTCCTCC-TAAGAGCTATA----------TCAAATATAATGGTATAT--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AA
TA---GTATCTCATGTGAAGCTGATGCTATGGTTATCTCCATTGTTACTATTGAAGAGTCT
>Tursiops_truncatus
CTCT--TTTCCTAC-TAAGAGCTATAACGTAAGGTATCAAATATAATGCTATGT--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AA
TA---TTAGCTCATATAAAGCTGATACTCTTGTTATCTCCATTTTTACTGTTGAAGAGACT
>Equus_caballus
CTTTCCTCTCTTAA-TAAGAGCTATAACATAATGTATCAAATATAATGATATAT--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AC
TA---TTATCTTATATAAAGCTGATGCTATTATTATCTCCATTTTTACTATTGAAGAAGCT
>Ceratotherium_simum
CTTTGCTCTCTTAA-TAAGAGCTATAACATAATGTATCAAATATAATTATATAT--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AA
TA---TTATCTCATATAAATCTGATGCTGTTATTATCTCAATTTTTAGTATTGAAGAGATT
>Myotis_myotis
CTTTAATCTCCTAA-TAAGAGCTATAACATAATGCTTCAATTGTAATGATGTAT--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AA
TA---TTATCTCATATAAAATTGAAGCTATTATTATCTCCATT-TTACTATTAAAGAGACT
>Rhinolophus_ferrumequinum
CTTTGATCTCCTAA-TAAGAGCTATAACATAATGTTTCAAATATAATGATATTTG-------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------AA
TA---TTATCTCATATAAAGCCAATTCTATTATTATCTCCATT-TTACTATTGAAGAGACG
>Homo_sapiens
TTTTGCTCTCCTAA-TTAGAGCTATAGCACAATATGTCAA-TATAAT----CAT--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------TA
TA---TTATCTCATATAAAG-----ATTATAATGATCTTCATTTTTACTACTAAAGA--CT



Mole3_LTR

>MLT1A
--------------------------------------------------------------------------------
-----TGTCTTAGTCTGTTCGGGCTGCTATAACAAAATACCATAGACTGGGTAGCTTAAACAACAGAAATTTATTTCTCA
CAGTTCTGGAGGCTGGG-AAGTCCAAGATCAAGGCGCCGGCAGATTCAGTTTCT-----GGTGAGGGCTCATTCCCTG--
---------GTTCGTAGACGGC-GCCTTCTCACTGTGTCCTCACATGGCGGAAGGGGCAAGGGAGCTCTCTGRGGTCTCT
TTTATAAGGGCACTAATCCCATTATGAGGGCC-----CCGCCCTCATGACCTCATCTAATCCTAATCACCTCCCAAAGGC
CCCACCTCCTAATACCATCACATTGGGGATTAGGGCTTCAACATATGAATTTTGGGGGGACACAAACATTCAGTCCATAG
CA---------------------------------------------------------------
>Myotis_myotis
GTTCTCACGCA-CAGGAACGTAGGGGT----------GGCAGGTGGAA--ATGGG----GGATGTG-GCAA--GG---CA
CG---TGTCTTAGTCAGTGTAGGCTGCTTAAACAAAATGCCATAGACTGAGTGGCTTAGACAACAAGCATTTACTTCTCA
CAGGTCTGGGGGCTGC--AAGTCCAAGGTCAAGGTGCTGTCTGCCTTGGTTCCT-----GGTGAGAGTTCACGTCCTG--
---------GTTTGCAGGTGGCCACCACCTCACTGTGTCCTCACATGGTGGAGGAAGA-------------------CAC
TATATAGGGACACTGATTCCATCATGGGGACC-----CCACCCTCATGACCTCATCTAAATCT-----------------
-CCATCTCCAAATGCCATCACCTT------------------------------------------------------AG
CAA---C-CT----G-GTGGTGCCTGCCACTCAGTCACAATGGCTGGCTCCTCATTCTGTCTCTG
>Rousettus_aegyptiacus
GTCCTCAAGCA-CGGGAATGGCGGGTT----------GGCAGATGGAA--ATGGG----GGATGTG-TCAA--AG---CA
CT---CATCTCAGTCCGTTTAGGCTGCCATAATAAAATGCCATGGACTGAGAGGCTTAGACAACAAACATTTGTTTCTCA
CAGTTCTGGGGGCTGG--AAGTCCAAGAT---GGTGCTTTTCAATTTGGTTCCT-----GGTAAAAGCCCAGTTCCTG--
---------GTTTACAGATGGCCTCTTCCTCAC------------TGGTGGAGAGAG--AGTGAGTTTCCT------CTC
CTTATAAGGATACAAATCTCATCATGGGGGCT-----CTACCTGCAGGACTTCATCTAAATCTAATTACCTCCCAGAGAC
CTCGTCTTCAAATACTATCACATTGGGCATTAAGCCTTCAACGT--GAATTTTAGAGGGACACAAACATTCAGTCCTTGA
CAA---CATT----G-GTGGTATCTGTCACTAAGTC-----------------ATTCTGTCTCTG
>Condylura_cristata
ATCCTCAAACA-CAGCAAGCTAGCAGT---------TGGCAGATGGAA--ATGGGAGCAGGGTGTGTGCAATGAG---CA
CT---TGTCTTAGTCAGTTAAGGCTG-TTTAATAAAATGCCAGACACT-AGTACTTCACACAACAAACATTTACCTCCCA
CAG-TGTAAAGGTTGGG-AAGCCAAGGATCCAGCCGCTGGGAGTCAGGGGTCT------GGCAAGCACCCACTTCCTGCC
ATGTTTGAGAGTTGCAAGTAACTTCCTTTTCACAGTGTCCTCACACAGCAAAGAGAG--------TCTCTT-----CCTT
CTTGTCGAGGCTTTGAGTCCATGGCTATGGCC-----CCACCTGCATGAGCCATTATCCTTCT-------------AGAC
TCCATTTCCAAATAGCACTGCTTTGGGTATCAGGACTTTAACATACGAAGTTGGGGGAGGCAC-AGCATTCAGTCCCTTA
CAA---CACT----A----TCATCTGTCCCTGTGTCCTAACAGCTGGCATCTCATCCTCTCTCTG
>Sorex_araneus
ATCTGTAAGCATAAGGCAT--AGGTGT---------TGGCAGACAGAG--ATGGG---GCAGTGTA-GCAA--GG---CA
CT---TGTTTTA----GTTTAGGTTA-TTTGTTGCAAAGCCATATATTGGGAATTGTA---------CATTT--CCCCCA
TAGTTGTTGAGATTGGGAAAATCTAAGATCAAATTTCTGATAGACTGGCTACCCATCTGAACATGAGCCCACTCCTTACC
ATGCTTTGCATTTGTAGACAGCCTCCTTACTAT----------CTGGGTAGAAAGTGAAAATGAGTCTCTT------TTA
CGTCTAAGAATTCCAGTGCCATCATGGATACTTCCTACTGCCTCTGTGATCTCACCAAAATATGATAAGTTCCCAAGGTC
CC--TCGCAAAATGTTGTCATGCTGGGTGTTATAGCTTCAACATATGAAATTTGGAGAAACACAAGTAGACAGTTCATAA
CAA---CACT----G------AGCTGTCACTATATCATAACAGCTAACTCCTATTTCTTTTCATC
>Canis_familiaris
GTCTTCAAGCA-CAGCGATATAAGAGC---------TGGCAGCTGGAA--ATGGA----AGACCTG-GGAA--GT---CC
CT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------G-GTGGCATCTGTCACCATGTCACAACAACTGGCTTTTCATCCTGTCTCTA
>Felis_catus
ATCCTCGAACA-CAGGAATGCAAGGGT---------TTGCAGATGGAA--ATGGA----AGATGTG-GCAA--AG---CA
CT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------G-GTGGCATCTGTCACCGTGTCGCAACAACTGGCTCCTCAACCTGTCTCTA
>Manis_javanica
GTCCTCCAGCA-CAGGGATGCA----------------------GGAA--ATAGG----GGATGTG-GCAA--GG---CA
CA------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------GAATGCTGTCTGTCATCATGTCACAG---CTGGTTCCTCATTCTGTCTCTG
>Sus_scrofa
GTTCTCAAGCA-CAGGGATGTAGGGTT---------TGGAACTTGGAA--ACGGG----AGATGTG-GCAA--GC---CA
CT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------T-GTGTGATCTGTCACCAGGTCACAA---CTGACTCCTCATTTTGTCCCCA
>Bos_taurus
GTTCTCAAGCA-CAGGGATGTAGGGGT---------TGGTGGCTGGAA--ATGGG----GGGTATG-GCAA--GG---CA
CC------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------A-GTGG-ATCTATCACCATGCCACAA---CTGGCTCCTCATCTTGCCCCCA
>Equus_caballus
GTCCTCAAGCACCAGGGATGTAGAGGT---------CGGCAGTTAGAA--ATGGG----GGATGTG-GCAA--GG---CA
CT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------G-GTGGAATCTGCCACCATGTCACAACAACTGGCTCTTCATCCTGTCTCTG
>Ceratotherium_simum
GTCCTAAAGCACCAGAGATGTATGGGTGTAGTAGGGACATAGTTAGAA--ATGGG----GGATGTG-GCAA--GG---CA
CT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------G-GTGGTATCTGCCACCACGTCACAACAACTGGCTCTTCATCCTGTCTCTG
>Mus_musculus
ATCCTCAAGCA-CAGAAATGGAGAGTTCT-------GTGCACTGGGAAGCATGGA---------TG-ACTG--GA---CG
CT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------G-GCAGTACCTGCTACTGTGCC-------CTACCTCGCCCTCCTGTCAAAG



Mole23_LINE

>L1MA9_3END
---------------------------------------------------------------GGATGAATAAGTTCTGG
AGATCTAAT--GTACAGCATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTT
AAGTGTTCTCACCACACACAAAAAAA--TGGTAACTATGTGAGGTGATGGATAT--GTTAATTAGCTTG-ATTGTGGTAA
TCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACC
TCAATAAAGCTGGAAAAA--------------------------------------------------------------
----------
>Sus_scrofa
AATGTTTGGCATAATACTTTACAGGACTTTAAATACTATTTTCT--AAATT---TAAAAT------------AGTCCTGA
AGATGTAAC--ATATCACATAGTGACTATAGTTAACAGTACGGTATTGTATATTTAAAAGTTGCTAAGAAAGGGATTCTT
AAAAGTTATCATCACAAGAAAAATAA-TTTGTACCTACATGTGATAATGGAT----GTTAACTAGACTTAATTGCAGTAA
TCATCTCACAGTATATACCAATATAGAATCATTATGCTGTACACCCTACTAATACGA---TGTTGTATGGCAATTATATC
TCAA-----------------T--AAAAAGAT---TTG-AAAGT----AAACTTACAAAGGAGGCAG-AGGCAGTTCCTG
GT--TATGAA
>Bos_taurus
AATGTTTGGTACAATGCCTTACATGATCTTAAATAATATTCTCTAAAAATT---TAAAAG------------AGTCCTGG
GTGTGTAAT--ATACAGCATGGTGACTATAGTTAATAATACTATATTGTACATTTAAAGGTTGTTAAGAGAGATGATTTT
AAAAATTCTCATTGTAAGAAAAACAGTTTTGTAACTGTGTCTGGTGATGGGTGTTAGTTAACTAGACTT-ACTGT-GTGA
TCATTTCACAATGCATACCAATATGGAATCATTATGTTGTAAACCTGAGTGATATAA---TGTTACATGTCAATTATATC
TCAA-----------------TAAAAAAAGGT---TTT-AAAGTAGAGAAGCTGAAAAGGGAAGCAG-ATGTAGTTCCTG
GT--TATGAA
>Condylura_cristata
GATCTTTGGCGCTCTGCCTTACAAGGGCTGAGACAATCTTTTTCTAAAGTT---TAACGT------------GGGACATG
GGGAGAGGTTACTGTAGTAGGGTGGCCATAGTCAATGATACTGTATCTCACATTTGAA----------------GTGGCT
AAGAGCTTAGATCACAAAGGAAAGAATT---TAACTATAT----------------GTTAACTAAATTT-ATTGTGGTG-
TAATTTCACAGCCTACACAATTATCAAATCATTATGTTGAAC------CAAATACAG---TGATACATGTCAATTATATC
TCA------------------T----AAAATT---TGT-TGAATGGAGAAACTTAGAAGGGAAGAAG-ATGCAGTTCCTC
TTAATATAAA
>Sorex_araneus
AATGTTTGGCACAACGCCTTGTAGGAGCTTAAATAATGTTTTCTTAAAACT---TAAAAT--------------------
---------------AGCATGATGACTATAGGTAGTAACA--GTATGGTGTATTTGAAAACAGCTAAGAAAGTAGATCTC
TAGAGTTCT---CACAAGAGAAAACAACTTATAGCCATATGTGGTCATGGAT----GTTAACAAGATTT-AATGTGGCAA
GAATTTCAC-------------ATTAAATCATTATGCGGCACACCT-ATGTCTAGAA---CACTATTTGTCAATTACATC
TCAA-----------------CGTTTTTTTTT---CCTTTAAATAGAGAAACATACAAAGCAAGAGG-ATGCAGTTCCTG
GT--TATAAA
>Canis_familiaris
AATGTTGGGCACGGTGCCTTACGGAAGCATAAATAATATTTTCTTAAGGAC-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------TAA-----AAT---GT----AACAGAGAAACTTACAAGGGAAGAGGAATGCAGCTCCTC
AT--TAGGAA
>Felis_catus
AACGTTGGGCATGGTGCCTTATGGGAACTC----AATATTTTCTTAAGGAT-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------CAA-----AAT---TT--AAAATACAGAAACTTACAAGGGAAGAGGAAAGCAGTTCCTA
GT--TATGAA
>Manis_pentadactyla
AATATTTGGCACAATGCCTTAGGGAAGCTTAAGT---ATTTTCTTAAGGGC-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------TAA-----AAT---TT--AAAATAGAGAAACTTACAAGGGAAGAGC-ATGCAGTTCCTA
GT--TATGAA
>Equus_caballus
GAAGTTTGGCACAATGCCTTATGGGATCTTAAATAATATTTTCCTAAGGGC-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------TAA-----AAT---TT--AACATAGAGAAACTTACAAGGGAAGAAG-ATGCAGCTCCTA
GT--CACGAA
>Ceratotherium_simum
AATGTTTGGCACAGTGCCTTATGCGAGCTAAAATAAAAATTTCCTAAGGGC-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------TAA-----AAT---GT--AAAACAGAGAAACTTACAAGGAAAGGGG-TTGCAGCTCCTA
GT--CATGAA
>Myotis_myotis
AATGCTTGGCACAGTGCTTTATGGGTGCTTAAATTATATCTTCTCAAGGGC-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------TAA-----AAT---TT--AAAACAAAGAAACTTACAGAGGGAGAGG-ATATGGTTCCTG
GT--TATGAA
>Rousettus_aegyptiacus
AGTATTTGGCATGATGCCTTATGGGAGCTCAAATAATATTTTCTTAAGGGC-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------TAA-----AAT---TT--AAAACAGAGAAACTTACAAAAGGAGAAG-ATACAGTTCCAG
GT--TATGAA
>Homo_sapiens
GATGTTTGGCACAATGCTTTATAGGAGCATAAA-AATATTGTCCTAAGGGT-----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------TAA-----GAT---TT--TAAATAGAGAAACTTATAGGGAAAGAGG-ATGCAGTTCCTG
GT--TATGAA



Mole44_LINE

>L1MA9_3END
-------------------------------------------------------------------------TTTTTCC
AGCTTTAT----TGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATATACGTA
TACA----TTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTACC--ATTTTTTTGTG
TGTGGTGAGAACACTTAAGATCTA--------------------------------------------------------
------------------------
>Myotis_myotis
TGACGGGGTCTAAAAGAATCAACAGAGTATCATTGAAACCACAACATATG---TAAAGTTTTT-GTTTTTTTTAAATTTC
AGCTCCAT----CAAGGTGTAATTGACATACAAAATTGTAAGATATTGTAAGTATATATTGTGGTGATTTAACATATGTA
TATG----TTGTGAAA-GATTCCTGACATCTGGTTAATTAAAACATCAATCACCTCACATA----------TTGTTTGTG
TGAG-----------------------TTAAGATGTATTTTTC-AGTTACAT---CTTTTTAAGAAAATTTAATCCTTGA
AATAGAGTAAAATGCAATAAAATG
>Rousettus_aegyptiacus
TGACAGGTTCTAGAAGAATCAACAGAGTATCATTTAAACCACTAAAGATC---TAAAAACATT---ATTTT-TTAATTTA
AGCTTTAT----TGAGGTATAATTAACATATAAAATTAGAAGATATTTAAAGCATATATTGTGGTGATTTGATATATAGA
CATA----TGGTGAAAGGAGTCCTGACATCTAGTAAATTAACACATCCATCATCTCACATATTTATCTTTCTTTTTTTTT
TTTGGTGAG------------------TAAAGAGATATTTTT--AGTTACAT---CTTTTTAATGAAATCTAATCCCTCA
AATG-----AAATGCAATAAAATG
>Condylura_cristata
CGACAGGTTCTAGAAGAATCAACAGAGGGTCATTTAAACCACTAAGTACA---TAATAGTTTA---TTTTT---AATATC
AGCCTTAA----TGAGGCATAATTGATATATAAATTTTTAAGATATTTAAGGTATAAATT-----GATTTCATATAAATA
TAAA----TTGTAAAGGAGTTCCTGTA--TCGATTTATTAATACACTCCTCACCTCATTTATTTACC----TTTTTTCCC
CTTGGTGAG------------------TAACAAGGTATTTTTTAAATTATAT---CTTTTTAGTGAAATCTAATCCCTAA
AATAT---------------AATG
>Solenodon_paradoxus
TGACAGGTTCTAAAAGAATCAAAAGAGGATCATTTAAAGCACTAAACATT---TAAAGAGAACTTTTTTTTTTTTAATTC
AACTTTTT----TGAAGTATAATAGACTGTTAAAATGTTAAGATACTTCAAGTGTCCATCATGGTGATTTGATCTATGTA
TGTATACATTGTGAAGAGTTCTCTCTCATCTAGTTAATTAACAC----CTCAC-----AGATTTATCTTTTTCATTATTG
AGTA-----------------------AAGAGAGATATTTTTAATGCTGCTA-----------GAAAGTTTAATTCCACA
GANNNNNNNNNNNNNNNNNNNNNN
>Canis_familiaris
TGACAGGCTCTAGAAGAATCAACAAAGTGTCATTGAAACTACTAAATATT---TAAAAGTGTT---TCTAT---------
AGTTGTAT------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CTTTGTAATGAAATCTAACCCCTAA
AATACAGTAAAATGCAATAAAATG
>Felis_catus
TGACGGGTTCTAGAAGAATCAACAAAATATCATTGAAACCACTAAATATT---TAAAGAGGTA---TTTTT-------TT
AGTTTTAT------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CTTTGTAATGAAATCTAACCCCTAA
AATATAGTA------AATAAAATG
>Manis_pentadactyla
TGACAGGTTCTGGAAGAATCAACAAAACATCATTTAAACCACTAAATACA---TAAAGAGGCA---TTTTT-------TT
AGTTGCAT------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CCTTTTCATGAAATCTAATCTCTGA
GATATCGTAAAATGCAATAAAATG
>Sus_scrofa
CGACAGGTTCTAAAAGAATCAATAGGATATCATTCGAAACATTAATTATT---TAAAGACATA---TTTTT-------TC
ATTTGTAT------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CCTTTAAATGAAATCTAATCCCTGA
AATATAGCAAAATGCAATGAAAGG
>Bos_taurus
TGACGGGTTCTAAAAGAATCAACAGAGTATCACTGGAAACAGTAAATATT---TAAGGAGGGA---TTTTTTT---TTTC
AGTTGTAT------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CCCTTTAATGAAATCTAATCCCTCA
AATATAGTAAAAGGCAATGAAATC
>Equus_caballus
TGACAGGTTCTAGAAGAATCAACAGAGTATCGCTTAAACCACTAAATGTT---TAAACAGATA---TTTTT-----TCTT
AGTTGTAT------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------TCTTTAATGAAATCTAATCCCTAA
AATACAGTAAAATGTAATAAAATG
>Ceratotherium_simum
TGACAGGTTCTAGAAGAATCAACAGAGTATCATTTAAGCCACTAAATATT---TAAACAGGTA---TTTTT-------TT
AGTTGTAT------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CCTTTTAATGAAATCTAATTCCTGA
AATATAGTAAAATGTAATAACATG
>Homo_sapiens
TGACGGGTTCTAGAAGAATCAACAGAGTATCATTTAAACCACTAAATGTT---T--ACA-----------------TTTT
AGTTATGT------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CCCTTTAATGAAATCTATTCCTTGA
AATAGAGTAAAATGCAAAAAAATC



Mole64_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
-----------TTTTTCCAGCTTTATTGA----------GGTATAATTGACAAATAAAAATTGTA---TATATTTAAGGT
GTACAACGTGATGTTTTGATA---TACGTATACATTGT---GAAATGA-TTACCACAATCAAGCTAATTAACATATCCAT
CACCTCACATAGTTACCATTTTTTTGTGTGTGGTG---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------
>Equus_caballus
AATTTGCTTAAGATGACAAAGCAAGGAGGTAGTGCAGCCAGACATCAAACCCAC--AATCTGA---TTCGAAGTTTA---
-TTTTCTT---TTTTTA-------ATTGAAGAATAATTGGGAATAATTGACAAAT-ATAATTGTATACTATATTTAAAGT
GTATAATGTAATGATTGGATCAG-TATATACGCATGGT---GGAATGA-CTACCAAGATCAAAATAACTAACACATCCGT
CACCTCACACGGTTAACTCATTT---------------TT----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------CAAAAGTCATTGTCTT---AGCCATGACTTTGGATT
ATTAATGC------GTGTATAGTCTATAGTTGGGG--GGGGGGGAGCT
>Ceratotherium_simum
AACTTGCTTAAGATCACAGAGCAAGGAAATAATGCAGCTAGACCTCAAACCCGCAGAGTCTGA---TTCAAAGTTCA---
-TTTTC-T---TTTTTA-------ATTGAAGAATAAACAGGCATAATTGACAAAT-ACAGTTGTATACTATATTTAAAGT
GTATAATGTGATGATTGGACATG-TATATATGCATTGT---GGAATGA-TTACCAAGATCAAGATGATTAACACATCCAT
CACCTCACATAGTTAACTCAATT---------------TT----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------CAAAGTTTATTGTCTT---AAAGGTGACTTTGGACA
ATTAATGC------ATGTATAGTCTAGAGTT-------AAGGGGTCGT
>Condylura_cristata
AACTTGCTCAAACTCACAAAGCAAAGAAATAGTATTGCTAGACATCACACCCAC--AGCCTGA-----------------
---------------------------------------GGAATAATTGTCAAAT-ACAATTGTA---TATATTTAA-GA
GTGCAGTG-GGTGACTGGCTATGTTGTAAATACATTAT---GGCATGG-TTACCAAGATCAAGATGATCCACACATCCAT
CACC--GCAAAATTAA-----------------------T----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------CAA-GTGCATTGTCCT---AGACATGACTGTGGGTA
ATTCATGCAGCAAGATGGATTGTCTGTTGTT-------GGGGGGTACT
>Uropsilus_gracilis
AACTTGCACAAGATCACAG-GCACGGAAGTAGCACCGATGAACAGCACACTCAC--AGCCCAA---TTCAA-GTTTAGAT
GTTTTCTT----------------TATGA----------GGAATAATTGGCAAAC-ACAAGTGTA---CATGTTGAAGGA
GTTCAATGTGCCGACTGGACATGTTGCAACTACATTACAGAGAAATAAATGACCACAAGCAAGATAACCCACA-----AT
GAGCTT-CAAAGTGAA-----------------------C----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------CAA-ATGCCTTGCTCT---AAATGAGACTTTGGATA
ATCA-TGT------ACATACTGTCTATCTTC-------AGGGTGTGCT
>Canis_familiaris
AATGTGCTCATGGTTACAATGTAGGGAAATAGCACAGCTAGAAATCACACCCACAGAGCCTGA-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------TT----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------CAAATGTCGTATTCTT---AAACATGACTTTGGACA
ACTAATGC------ACATAATGGTCATAGTTGGGGG-AAGGGAGTACT
>Felis_catus
AACTT------------GGCTCGGGGAAGGAGCACAGCTAGACATCAAAACCAG--AGTCTGA-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------TTCAAAGTTCATATTCTTGGGGCACCTGGGTGGCTCAGTCGG
TTGGATGTCCTACTTCAGCTCCGGTCATGATCTCACGGTTCACGGGTTTGGGCCCCACGCTGGGCTCTGTGCTGACAGCT
CAGAACCTGGAGCCTGCTTCAGATTCTGTGTCTCCCTCTCTCTCTGTCTCTACCCGACTCACACTCTCTCTGTCTCTCTT
CTCTCAAAAATAAATAAAACATTAAAAAAATTTTTTTAATAAAAAAAAGTTCATATTCTT---AACCCTGACTTTGGACA
ATTAATGC------ACATGTAGTCCAAGGTTGGGGTGGAAGGGGTGCT
>Manis_pentadactyla
AACTTGCTCAAGATTAGAAAGCAAAGAAATAGCACAGCTAGACGTCAAACCCACAGAGGCTGA-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------TT----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------CAAAAATCATGGTCTT---AAACCTGACTTTGGATA
ATTAATGC------AT-----GTCTGCAGTTTGGGG-GTGGGGGTGCT
>Sus_scrofa
CACTTGCTCAAGATCACAAAGCAAAAAAGCACCACAGCTGGACATCAACTCCACAGAGTCTGA-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------TT----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------CAAGCTTTATTGTCTT----AAAATGACTTTGGATA
ATTGGTGC------CTATATAGTCTATAGCT-------AAAGGATGCT
>Bos_taurus
AACTT------GATCACAAAGCACGGAAGTAGCACAGCAAGATGTCAAACCCAGAGAGTCTGA-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------TT----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TAAAGTGTATTGTCCT---AAACATGACTTTGGATG
ATTAGTGC------ATGTGTAATCTATTGTTGCA---GGGAGGGTGCT
>Myotis_myotis
AACTTGTTTAAGAT-------------------GCAGCTCGATATCAAACCCACAGAGTCCGA-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------TT----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------CAAAGTTCAGATTCTT---AAACATGACTTTGGATC
ATTAATGC------ATGTACAGT------------GAGAGGGGGTGCT
>Rousettus_aegyptiacus
AGCTTTTTTAAGATCACAAAGCAAGAAAGTAATGCAGCTAGAAATCAAACCCACAGAATCTTA-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------TT----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------CCAAGTTCATAGTCCT---AAACATGATTTTGGATA
ATTACTAC------ATGTTTAGTT--------------GGAGGATACT
>Homo_sapiens
AACTT--GCAATATCACGGAGCAAGGAAGTAGTGGAGCTAGACATCAAATCCAC--AGTCTGA-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------TT----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------CGAAGTTCATATTCTT---AAACATGACTTTGGATG
GTTAAAGC------ATGTATATTCTATAGT-------GGAGGTGTGCT



Mole66_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
----------------------------------------------------GCAGGATGAATAAGTTCTGGAGATCTAA
TGTACA---GCATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTT
CTCACCACACACAAAAAAA---TGGTAACTATGTGAGGTGATGGATATGTTAATTAGC-------TTGATTGTGGTAATC
ATTTCACAATGTATACGTATATCAAAA--CATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACC
TCAAT---AA----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------AGCTGGAAAAA----------------------------------------------
---------------------------------------------------------------------
>Equus_caballus
TTAGACCAATACAT------TTCTTTAAAGGATTCAGTAACTT----TGACTG------GCTTT----------------
---AAAAATTT----------TTTT---TCAACATT----AAAAAAACA--------------------TGGAAATGTAA
TGTGCA---GCATGGTGACTATAGTTAGTAATACTATATTGCATGTTTGAAAGTTGCTAAGAGAGTAAATCTTAAAAGTT
CTCATCACAAGAAA-AAAATTTTTGTAACTTTGTATGGTGACAG--ATGTTAACTAGA-------CTTATTTTGGTGATC
ATTTCTCAATATATATAAATATCGAAT--CATCATGTTGTACATCTGAAACTAATATAA-TGTTATAGGTCAATTATACC
ACAATTAAAA----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------AAATAAATAAATAATTAAAAGGTCTAAATGTACCTA--GCAG---TTA--ACAA---
-CAACAACAAAATG---AACACCACATGTAAATACAATCTTT-TAGCCAAATT-TGCATGTTCATATGG
>Ceratotherium_simum
TTAGACCAATACAT------TTCTTTAAAGAATTCAGTAACTT----TGGCTG------GCTTT----------------
---AAAAAAAT-----------TTT---TTAATATT---AAAAAAAATG--------------------TGGGAATGTAA
TGTACA---GCATTGTGACTATAGTTAATAATACTATATTGCATATTTGAAAGTTGCTAGGAGAG---ACCTTAAAAATT
CTCATCACAAGAAGAAAAATTTTTGCAACTATGTAT-GTGATAG--ATGTTAACTAGA-------CTTATTTTGGTGATC
ATTTCTCAATATGTACAAATATCAAAT--CATTATGTTGTACATCTGAAAC-----TAA-TGTTATACGTCAACTACATC
ACAATT-AAA----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------AAATAAATTAAAAATTAAAAGGTCTAAATGTACCTAGTGTAG---TTA--ACAA---
-AAAAAAAAAAATG---AACACCATATGTAAATACAATCTTT-TAGCCAAATT-TGCATTTTCATATGG
>Condylura_cristata
TTAGACCAATTCAT------ATCTTT-AAGGATTCAGTAACTG--ACAGACTGTAAAATGTTTTTTCTAACATAAAAAAC
TTTAAAATGTT---------TTTTT---CTAACAT--------AAAAAG--------------------CAGGGGTGTAA
CATACA---GTAAAGTGACTGTAGTTAATAAGCATATATTATATACCTGAACTCTGCCATGAGAG---ATCTTAAAATTT
GTCATCGTGAGAAAAAAAA---TTGTAACTATGTATTGTGACTA--ATGTTAACAAAA-------CTTGAAAT-ATAATT
AT-----AATTTATACAAATATCAAATAAAATTAAGTTGTACATCTGAAGGGAACATAA-TGTTATATGTCAATTATACT
TTAGTAAAAA----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------AAC-------------AAAAGGTCTACATACACCTA--GTGG---TTA--GCAA---
-CAACCAAAAATTG---AACACCATATGTAAATATAATCTTT-TAGCCAAATT-TGCATTTCAATGTGA
>Solenodon_paradoxus
TTAGACCAACACAT------TTTTTAGGGCAGCATATTAACCACACTGATCTGAACTTTGCTTT----------------
---TTTTCTTT----TTTTTTTTTT---GTAA--------GGAAAGGTG----------------CAGGCAGGAATG-AA
GGCAAATAGGCAAGCAGGCAGGAAG-AACAGTACTGAATTGTATATTCAAAAGCTGTTAAGAGA----AATTTAGAAATT
CTCATCATAAGAAAAAAAA----TGTTATTATATTTGGTGACAG--ATGCTAACTAGACGTATTGCTTATTGTGGTGACC
ATTACAAAATGTATAAAAATACTGAAT--TGCTGTGTTGTACATCTGAAATTAATTTAA-TGTCATATGTCAACTACATG
CCATTAAAAAGATAAGTACGTGTTCTGATGGCTCAGTGGTTAAATCTGCAACTCCAGATGACACAGTCCACATAAAAGCC
CAGGACTGGCAGGTGGGGGACGGATGAAAGGGAAGTGTGACAGGACAACCAGCATGAGCAACTCAATGGATGGACAGACA
CTTCTTTGTATTTCCTGCCTACCTACTTGCCTTCATTCCTGACAGCTTCCTTCCTTTAAATAAATAAATAATAACTTATA
AATAAAATTCTTCATTTAAACAAAGATAAA----AAATTAAAAGGTCTCAATGTGCCTA--GTGG---TTAAGAAAAGAA
AAAAAAAAAAAAAG---AACACCATATGTAAACACAATCTT--TTGCTAAATT-TTCAATTTAATGTGG
>Canis_familiaris
TTAGAGCAAT----------TTTTTTAAAGGATTCAGTAACTTCAACTAGCTG------GCTTT----------------
---TAAATTTT-------------T---TTAACATT---AAAAAAAATG-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------AGTACCGTATGCAAATACAATCTTT-TAGCCAAATT-TGCATTTTAATATGG
>Felis_catus
TTAGAGCAATATGTGTATACTTTTTTAAAGGATTCAGTAACTTCAACTGGCTG------GATTT----------------
---TAAATGTT-------TTTTTTT---TTAACAT-----AAAAAAATG-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------AGTACCATATGCAAATACAATCTTT-TAGCTAAATT-TGCATTTTAATATGG
>Manis_pentadactyla
TTAGACCAATATG-------TTTTTAAAAGGATTCAGTAACTT----TAGCTG------GCTTT----------------
---AAAACGTT----------TTTT---TCAATATT---AAAAAAAAAG-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------AATGCCTTATGTAAATACAATCTTT-TAACCCAATT-TGCATTTTAATATGG
>Sus_scrofa
TTAGATCAATACAT------TTTTTTAAAGGGTTCAGTAACTTTAACCGCCTG------GCTTA----------------
---AAAAATTT----------TTTT---TCAACATT---AAAGAAAATG-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------AATGCCATATGTAATTATAATCTTT-TAGCCAAATT-TGCATTTTAATATGG
>Bos_taurus
TTAGACCAATACAC------TTTTTAAAAGAATTCAGTAACTTTAACCACATG------GATTA----------------
---AAATTCTT------------TT---TCAAAGTTAAAAAAAAAAATG-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------TACACCATATGCAATTATAATCTTTCTAGTCAAATA-TGCATTTTAATATAG
>Myotis_myotis
TTTGACCAATACAT------TTTTGAAAAGAATTCAGTCAATTTAACTGTCTG------GCTTT----------------
---AAAATGGT-----------TTT---GTAGCATT-----AAAAAATA-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------AATGCCATATGTAAATACAAT-TTT-TAGCCAAATT-TGCATTTGAATATGA
>Rousettus_aegyptiacus
TTAAACCAATACAT------TTTTTTAAAGGATTCA-TAATTTTAACTGGCTG------GCTTT----------------
---AAAATATTTTGGATTTTTTTTT---TTTACTT------AAAAAATG-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------AATGCCATATGTGAATACAATTTT--TAGTCAAATT-TGCATTTTAATATGG
>Homo_sapiens
CTAGATCATTAAGT------TTTTAAAAAGGATTCATT---TTTAACTGGCTC------GCTTA----------------
---AAACAA--------------TT---TTAACATT---AAAAAAAATG-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------AACACCATATGTAAATAAAATCTTT-TGGCCCAATTCTGCATTTTAATATGG



Mole75_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
-------TT----TTTCCAGCTTTATTGAGGTATAATTGACAAATAAAA-------------------------------
-------------------------------------------------------------ATTGTATATATTTAAGGTG
TACAACGTGATGTTTTGATATACGTAT----ACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACC
TCACATAGTTACCATTTTTTTGTGTGTGGTGAGAA---------------------------------------------
----------------------------
>Myotis_myotis
TGCTGTGAAATACTTAAAACAATATACAA-AGGAAGG-----------------------GATTAATATCA---TTATCT
ATGTAA-TT----TTTTA---TTTATTGAAATATAATTGGCATATAACA-------------------------------
--------------------------------------------------------------TTGTATGAGTTTTAGATA
TACAACATAATGATTTGATATGTGTAT----TTATTGCAAAATGATTATCACAGA-----TAGTTGAC--ATTTATCACC
ACACATAGTTACAAAAATTTTTGG--------------TAATCCATGTAATTT---ACAGTTTTAATACTTTAGGTCTGA
AGTACCCAAAATTCAGTTCTGCACCTTT
>Rousettus_aegyptiacus
TGCTGTGAAATACTGAAAACAATACAAAC-AGGAAGA-----------------------AATGAATATCA---TTATCC
ACGTAATTT----TTTCATTTTTTATTGAAATACAATTGACATATAAC--------------------------------
---------------------------------------------------------------TGTATTAGTTTTAGGTG
TACGACATAATGATTTGATACATATAT----ATATCGTAAAATGATTATCACAAT-----TAGTTGAC--ATAAATCACC
ACACACAGTTACAAAATTTTT-----------------TAATCTATATAATTT---ACAGTTTTAATACTTTAGATCTGA
AGTAACTGAAATTTGGTTCTGTACCTTT
>Condylura_cristata
TGCTGTAAACTAGTGAAAATGATTCAAAA-AGGGAGATAAATACCATTATCCATGTAATGGATTAATACCA---TCATCG
GTAATA-TT----TTTCATTTTTCATTGAGGTAGAATCAGCATGTAACA-------------------------------
--------------------------------------------------------------TTGTATTAGTTTTGGGTA
TATAC----ATGATTCCTTTTAGGTAA----ATATTGCGAAATGATTATCACAAT-----TAGTTAGA--ATTCATCCCC
ACACGTAACCACAATTATTTT-----------------TAGTGCTTGCCATTT---AAAGTCTTAATATTTAAGGTCTGA
AGTAAACCAAGT--AAACCTGTACCTTT
>Erinaceus_europaeus
TGCTGTAAAACATTACAAATAATACAGGC-AGGAGGA-----------------------GATTGATATCA---TTATCC
ATATAAATT---ATTTTCCATCTTATTGCAGTATAATTGACACATAGCATAATATAAGGTAGGCTGTAAAATTCCAGGTT
CTGTCCCCAGCAAAAGCCACAAATAAGCAGCACTTTGGTTAAAACACACACACACACACACACTATAATAGTTTTTGGTG
GACAATGTAGTGATTTGATATATATATATATATATTATAAGTTGATTATTAAAAT-----CTGTTAAC--TTCTACCCCA
ACACACAATTACAGATATGTT-----------------TAATCCATATAA---------------AAATTTAGGCTCTGA
ATCAACCCAAAATCAACTCTGAAACTTT
>Canis_familiaris
TGCACTAAAAGATCAAAAACAATACAAAC-AGGAAGA-----------------------GATTAGTATCA---TCATCC
ATGTCATTT-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------AAAGTCCTAATACTTTAGGTATGA
AGTAACCAAAGTTCAGTTCTGCACCTTT
>Felis_catus
TGCTATAAAATATTAAAAACAATACAAACAAAGAAGA-----------------------GATTCATATCA---TCATCC
GTGTCATTT-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------AAAGCCCTAATATGTTAGGTATGA
AGTAACCAAAATTCAGTTCGGCGCCTTT
>Manis_pentadactyla
TGCTATAAAATGTTGAAAACAATACAAAC-AGGAAGA-----------------------GATTAGTATCA---TTACCC
ATGTGATTT-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------CAAATCCTAATACTTTAGGTCTAA
AGTAAACAAAACTCAGTT------CTTT
>Sus_scrofa
TGCTATAAAATATTGAAAACAATAGAAAC-AGGAAGA-----------------------GATAAATATCA---TTATCC
ATGTAATGC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------AAAGCTCTAATAATTTAGGT----
------CAAAATTCAATTCTGCACCTCT
>Bos_taurus
CAATGTAAAATATTGAAAGCAAAACAAAC-AGAAAGA-----------------------GATTAATATCA---TTTTCC
ATATAATTT-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------AAAGTTCTAATAATTTAGTTAGGA
TGGNNNNNNNNNNNNNNNNNNNNNNNNN
>Equus_caballus
GGCTGTAAAATATTGAAAAC-CTACAAAC-AGGAAGA-----------------------GATTAATATCA---TTACTC
ACGTAATTT-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------AAAGTTCTAATGATTTAGGTCTGA
AATAACCAAAATTTAGTTGTGCACCTTT
>Ceratotherium_simum
TGCTGTAAAATGTTGAAAGC-CTACAAAC-AGGAAGA-----------------------CATTATTATCA---TTACCC
ATGTAATTT-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------AAAGTTCTAATAATTCAGGTCTGA
AGTAACCAAAGTTCGGTTCTGCACCTTT
>Homo_sapiens
AGCTGTAAAATATTGAAAATAATACAAAT-AGGAGGA-----------------------GATGAATATCA---TTACCT
ATGCAGCTT-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------TAAGTCCTAACACTTTACTTCTGA
AGTGATCAGAATTCAGTTTTGTGACTTT



Pig1_LTR

>LTR9A_EC
--------------------------------------------------------------------------------
-------------TG--TTTTGTGCCNGTCTCAGCCTATCAATAACCAATGTTGTGGCTGGACCAGCCCTTGTGGTTCTT
ATTATGATTGCAAGATGCCCTTCAGCAATAACCATCAGGAAACTTTGAAAAAATAAAGGTTTATTACTTACAGGACCTGG
AAATTACACAGCACACCTGGGGCCACACAG-----CGAGGTCACGGGTAGAGAGAGAGAGAGAGAGTACACGGGC-----
--------------CTGGGGTTCTGCTTTTATTGGGGTTGAGGGTGGGGGCCTAGGGTTTCGTGGGCTCACTCTTTATTG
GTGAATTTAAAACATAAGAGTNGGAATTTAAAGCACAGGAAGAGGAAAAAAAAACAAGTGGCCCAAATGGTCAGTTATTG
AAATCAACCAAGATCTCTAAAACAAAGGAGCCTCAGTGGGGGGAGGCGGCCTGGCTCTTTATCTAGTCGTGTGGCTGGCA
ATGTGTTTATTCGAGATAGCCATCTTTGAAGTGGATGCCTCTTTGAAGTGGATGCCTCAGCAATCAAAGCTTAAGTCAGG
CACTTGCATTACAAAAAAGAAAAAAAA-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------AACAACTGTCA
GGGCTTACACTACACA----------------------------------------------------------------
-----------
>Sus_scrofa
TGAATAAACTAATAAACACGTC---TCTGTATTTCAGAGCTAAATAAAC---ATCTCTTT-GGGGAGTTCACTGTATAAG
GT---AGTAA---TG--TTTAGTGCTGGTCTCAGTCCATCAATAACTAATATTGTGGCTGGACTAGACCTTGAAGTTCTT
ATTATGACAGCAAGATGCCCTTCAGCAGTAACCATCCGGAAACTTTGAAAAATGAAAAGTTTATTATCTAAAGGACCTCA
GACTTATACAGCACCCCTGGAGCCACATGGGAGGTTGAGGTTGGAGGAGAGGGGAGAGAGAGTGAGAGAGCGTGAGCAGT
TGAGCATGCAGGCCAGAGGGTTCTGCTCTTAAT-GGGTTGAGGTTGGGGGCCTAGTATTTCCGGAGGTCATTCTTTGTCG
GTTAATTTAAAACATAAGTGCAGGAATTTAAGGCTTGGGGAGAGGAAAAAAAAATCAGT---TCAAATGGTCAGTTACTA
AATCCAATGGTAACT-----GACAAAGAAGCCTCAGTG-GGGGAGGTGGCCTGGTTCCTTATCTAGTCTTGGGGCTGGCA
GTGCGTTCATTGGAGATGGCCATCCTTGAAGTGGATACCTCTTTGAAGTAGATACCTTGGCAATCAAAACTTACATC---
-----------CAAA---GGAG---AA-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------GCCAACTTTTT
GGGTTTACACTACA-----AGTAG---CACATGGGGAAAGCCAGCGTCT-CA----GTT-TTGGAGATCA--AAG--AGA
AGGTATGTTCA
>Bos_taurus
TGAATAAACTAATAAACAAGTC---CCTTTATTTCAGAGCTAAATAAAC---ATCTCCTT-TGGGAGTTCACTGTATGAG
GT---TATAG---TGTTTTTTGTGCTGGTCTCAGCCTATCAATAACTAATGTCATGGCTGGACTACCCTCTGTGGTTCGT
GTTATGATAGCGGAACACCCTTCAGCAATAACCAT-AGGAAACTTTGAAAAAATACAGGTTTATTACTTACAGGGCTTGG
AAATTACACAGCACAGCTGGGTCCACATGG-----TGAGGTTGAGGTTGGAGGGAAGGAGACAGAGAAACAACACACATG
TAAACATGCAGGCCAGGGGGTTCTGCTTTTACT-GGGTCAGAGGTGCGGGCCTAGGCTTTCTGGTGCTCATTCTTTATTG
GCAAATTTAAA---------------------GCCTGGGAAGAGAAAAAAAAAATCAGT---CCAAATGATCAGTTATCA
AAGCCAACCAAGATCTTTAAAACAAAGAAGCCTCAGTG-GGGAAGGTGGCCTGGCTCTTTGTCTCGTCTTGTGACTGGCA
GTCTGTTCATTGGACATAGCCATTCTTGAAGTGGATGTCTCTTTGAAGTGGATACTTTGGCAATCAAAACTTAAGCCAGG
CGCTGGCATTACAAA----------AAGTCCATGCTTAGGGTTTACACTGTTGCTGCTAAGTCGCCTCAGTCATGTCCGA
CTCTATGCGACCCCATAGACGGCAGCCCACCAGGCTTCCCCGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTT
GCCATTTCCTTCTCCAATGTATGAAAGTGAAAAGTGAAAATGAAGTCGCTCAGTCGTGTCTGACCCTCAGTGACCCCATG
GACTGCAGCCCACCAGGCTCCTCCATCCATGGGATTTTCCAGGCAAGAGTACTGGAATGGGGTGCCATTGCCTTCTCCAA
GGGTTTACACTATAA----CGTAG---CAAATGCGGAGAGCAAGAATCT-AA----GTT-TTGGAGGTGA--AAGAGAGA
GGATGTGTTCA
>Equus_caballus
TGAATAAACTAATAAGCAAGTC------------------------------------------------TCTGTATAAG
GT---AGTAG---TG--TTTTGTGCCAGTCTCAGCCTACTGATAACCAACATTGTGGCTGGACCGGCCCTTGTGGTTCTC
ATTATGATTGCAAGACACCCTTCAGCAATAACCATCTGGAAACTTTGAAAAAATAAAGGTTTGTTACTTACAGGACATGG
AAATTACACAGCACACTTGAGGCCACACAG-----TGAGGTTGCAGGTACAGAGAGAGAGAGAGAAAACGAGCTT-----
----------------GGGCTTTTGCTTTTATTGGGGTCAAGGGTGAGGGCCTAGGGTTTCATGGGCTCACTCTTTATTG
ATAAATTTAAGGCATAAGAGTGGGAATTTAAAGCCTGGAAAGAG-AAAAAACAATATAC---CCAAATGATCAGTTATGA
AAACCGACCAAGATCTCTAGAACAAAGGAGCTTCATTGGTGGGAGTTGGCCTAGCTCTTTACCTAGTTGTGTGGCTGGCA
ACGTGTTTACTTGAGATAGCCATGTTTGAAGTG-----------------GATGCCTTGGCAATCAAAGCTTAAGTCAGG
CACTTGTGTTACAAAAA-GAAAA--AA-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------GCCAGCTGTCA
GGGTTTACACTACA-----AGTAG---CAAATGGGGAAAGCAAGAATCT-AA----GTA-TTGGAGATCA--AAGCGAGA
GGGTGTGTTTA
>Ceratotherium_simum
TGGATAAACTAATAAATAAGTC-----TGTATTTCAGAGCTAAATAAACATGATCTCTTT-TGGGAGTTCACTGTATAAG
GT---AGTAG---TG--TTTTGTGCCAGTCTCAGCCTATCGATAACCAGTGTTCTGGCTGGACCAGCCCTTGTGGTTCTT
ATTATGATTGGAAGACACCCTTCAGCAATAACCATCAGGAAACTTTGAAAAAATAAAAGTTTATTACTTATAGGACCTGG
AAATTACACAGCACACCTGGGGCCACACAG-----TGAGG-TACAG--AGAGAGAGAGAGAGAGAGAATGAGCCT-----
----------------GGGGTTTTGCTTTTATTGGGGTCAAGGGTGAGGCCCTAGGATTTCATGGGCTCCCTCTTTATTG
GTGAATTTAAAACGTAACAGTGGGAATTTAAAGCCCGGGAAGAG-AAAAAACAATTGGC---CCAAATGGTCAGTTATGA
AAACCAACCAAGATCTCTAAAACAAAGGAGCTTCAGTGTGGGGAGGCAGCCTGGCTCTTTACCTAGTTGTGTGGCTGGCA
ATATGTTTACTTGAGATAGCCATCTTTGAAGTG-----------------GATGCCTTGGCAATCAAAGCTTAAGTCAGG
CACTTGCATTACAAAAA-GAAAA--AA-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------GCCAACTATCA
GGGTTTACACTACA-----AGTAG---CAAATGGGGAAAGCAAGAATCT-AA----GTA-TTGGAGATCA--AAGGGAGA
GGGTGTGTTTA
>Canis_familiaris
CGAATAA-----TAAACAGGTC---TCTGTTTTTTAGAGGTAAATG-ACATAATCTCTTTGGGGGAGTTCACTGTATAAT
GT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AGTAG---CAAATGGGGAGAGCAAGAACCT-AA----GTA-TTGTAGCTCA--AGGGAAGA
GGGTGTGTTCA
>Felis_catus
CGAATAA-----TAAACAGGTC---TCTGTATTTTAGAGCTAAATAAACATGATCTCTTTGGGGGAGTTCACCATATAAT
GT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AGTAG---CAAGTGGGGAAAGCAAGACTCT-AG----GTA-TTGGAGACCA--AGGCAAGA
GGGTGTGTTTA
>Manis_javanica
TGAATAAACTAATGAACAAGTC---TCTGTCTTTCAGAGTTAAATGAACATGATTTCTTT-TGGGGGTTCACTGTATACA
GT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AGTAG---CAAATGAGTAAAAGAAGAATCT-AA----GTA-CTAGAAATCA--AGAGGAAA
GGGTGTGTTCA
>Myotis_myotis
TGAATAAACTAATAAATAAAACAAGTCTCTGTTTCAGAGCTAAATAAACATGATTTCTTC-TGGGAATTCACTGTACAAG
GT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------GGTAG---CAAATAGGGAACGCAAGAATATCAAGTATGTATTTGGAGATCA--AGGAGAGA
GG-TCTGTTCA
>Rousettus_aegyptiacus
TGAATAAACTAATAAACAAGTC---CCTGTGTTTCAGAGCTACATAAACGTAATCTCTTT-GGGGAGTTCACTGTATAAA
GG------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AATAG---CAAATAGGGAAAGCAAGACTCT-AAGTATGTA-TTGGAGATCA--TGGGGAGA
GGATGTGTTCA
>Condylura_cristata
TGAGTAAACTAATAAACAAATC---TCTGGATTTCAGAGCTAAAGAAACCTGATCTTCTT-TGGGAGTATATTATTTAAG
AT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AGTAG---AAAAT-GAGAAAACAAGAATCTTAA----GTA-TTAAAAAAGATCAAGGGAGA
GGGTCTATTCA
>Sorex_araneus
TGAATAAACTAAGAAGCAAGTC---TTTATATTTCAGAGTGAAATAAACATGATCATGT--GGAGAGTTTGCTGTATAAG
GT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------AGTAG---CAAATAGGGTAAGCAAGAATAT-AG----GTG-TTGGGGATCA--AGGAGAGA
GA----GTTCA
>Homo_sapiens
TGAATAAAC----------------TCCATATTTCAGAGCTAAATAAAC---ATCTCCTT-TGGGAGGTCACTGTACAAG
TT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------GGCAG---CAAATGGAGAAAGCAAGAACCT-AA----GTA-TTAGAGATCA--AAGGGAGA
GGATGTGTCCA



Pig2_LTR

>ERV54-EC_LTR
--------------------------------------------------------------------------------
-------------TGTT-AAAAACAAGACAACAGGCC-CAAAATGGAGTCACTTAT-------GCTAAGCCCCACGTCAC
CAAACCGAGACTTAACTTAATTACAGTTTCGGCTCTCCCAGAAATGGAATCTTAAACCAGTCAATCAGGAATCACCTGAT
CAGCACTAGTTAGGTA----ATCTGCCTGATAGACC--CCTGCCATCC--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------CCTAAAGGAAAGTAACCTT
GCAATAACCAATCCAC-----TTTTTTGCCTAGTATAACTTCCTTGTTCCTGCTCCCTTCTGCCTATAAAAGTCTTTCAT
--TTTGTACAGCTCCTCGGAGCTCCTTTCTATCTGCTAGATTGGATGCTGCCCAATTCATGAATCATTGAATAAAGCCAA
TAAGATCTTTAAAATTTACTCAG---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------TTGAATTTTGTTTTTTAACA--------
--------------------------------------------------------------------------------
>Sus_scrofa
CTTGGTAAAGGTATTAATTATTTTCCCCTTTAAGATTCC---------------------------------CCAGGAGG
TTA---CACC---TATT-AAAAACAAGACAACAGTCCCCAAAATGGAATTGCTTGT-------GCTAAGCCCCACATCAT
CAAACTGAGACTTGACTTAATTACAGTTTCGGCTCTCCTAGAAGTGGAATCTTAAATCAGTCAATCAGGAATGGCCTGAT
CAGCACTGGTCAGCTA----ATCTGCTTGATGTTCC---CTGCTGTCC--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------CCTGAAGGAACATGATTTT
ACAATAACCAACCTGCTTTTTTTTTTTGCCTAATATAACGTTCTTCTTCCTGCTCCCTTCTGGCTGTAAAAGTCTTTCCT
--TCTGTATAGTTCCTCGAAGCTCTTTTCTGTCTACTGGATTGAATGGTGT-TGATTCATATATTGTTGAATAAATCCAA
TAAGGTCTTTAAACTTTACTCAGTTTGTTTTAAATTTAATTTCATTTTTCCCCTTTTTTACAGCTGCACTTGCGGCATAT
GGAAGTTCCCAGGCTGGGGGTCCAATCGGAGCTGCAGCTGCCAGCCTATACCACAGCCACAGCAACACCAGATCCTAGCT
GTGTCTGCAATCTATACCACAGCTCACTGCAACGCTGGATCCTTTAACTCACTGAGCAAGGCTAGGGGTTGAACCTGTAT
CCTCATGGATACTAGTCAGTTTCTTAACCCACTGAGCCCCAATGGGAACTCCCTTCAGTTTGTTTTTTAGCA---CACC-
--CTTTGAAAGACACACAGTTCACTCTCCT-GGGAAGCATCTGGCTTTTTGGTAAGTCCCAGTCTTGGTCTCAAAGTTGT
>Bos_taurus
GTTGGTAAAGGTGTTAATTATTTTCCCTTTTAAGAATCC---------------------------------CCAGGAGG
TTA---TACC---TGTT-AAAAACAAGCCAAAGGGCC-CCACATGGAGTTGCTTAT-------GCTAAGCCCCACATTAT
CAAACTGAAATTTGACTTAATTACAGTTTTGGCTTTCCCAGAAATGGAATTTTAAACTAGTCAATCAGGAATGGCCTGAT
CAGCATTAGTTAGGTA----ATCCTCCTGATGCTCCCTCCTACCATCC--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------CCTAAAGGAAAGTGACCTC
CCAATAATCCACCTAC-----TTTTTTGCCTAGCATAACTTTCTTATTCCTGCTCCCTTCTGGTTATAAAAGTCCTTCAT
--TTTGTACAGCTCCTTGGAGCTCCTCTCTATCTGCTAGATGAGATGCTGTCTGATTCATTAATTGTTGAATAAAGCCAA
TAAGATCTTTAAAATGTACTCAG---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------TTGAATTTTGTTTTCTAATA---CACC-
--CTTTGAGAGACACACAGTTCATTTTCCAGGGGG-------------------------------------AAAGTTCT
>Equus_caballus
TTTGGTAAAGGTGTTAATTGTTTTCCCTTTTAAGAAGCC---------------------------------TCAGGAAG
TTA---CACA---TGTTAAAAAAAAAGACAACAGGCC-CAAAATGGAGTCGCTTAT-------GCTCAGCCCCATAGCAT
CAAACTGA-----GACATAACTACAATTTCAGCTCTCCCAGAAATGGAATCTTAAACCAGTCAGTCAGGAATGGCCTGAT
TAGCGCTAGTTAGGTA---ATTCCACCTGATAGACT--CCTGTCATCC--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------CCTCAAGGAAGGTAACCTT
ACAATAACCAACCCAC-----TTTTCTTCCTAGTATAACTTCCTTGTTCCTGTTCCCTTCTGGCTATAAAAGTCTTTCAT
AATGAGTACAGCTCCTTGGAGTTCCCTTCTATATGCTAGATTGGATGCTGGCTGATTCATGCATCATTGAATAAGGCCAA
TAAAATCTTTAAAATGTACTCAG---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------TTGAATTTTCTTTTTTAACT---CACC-
--CTTTGAGAGACACACAGTTCACTCTCCT-GGGGAATGTCTGGCTTTTTGGTAAGTCCCAGTCTTGGTCTCAAAGGTCT
>Ceratotherium_simum
CTTGGTAAAAGTC----TTGTTTTCCCTTTTAAGAATCT---------------------------------TCAGGAAG
TTA---CATC---TGTT-AAAAACAAGACAACAGGCC-CAAAATGGAGTCACTTTA------CTTTACGCACCACGTCAT
CAAAGCGA-----GACTTAATTACAGTTTCAGCTCTCCCAAAGATGGAATCTTAAACCAGTCAATCAGGAATGGCCTAAT
TAGCACTAGTTACATA----ATCTGCCTGATAGACC---TTGTCACCC--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------CCTAAAGGAAAGTAACCTT
ACAATAACTGACCTAC-----TTTTCTGCCTAGTATAACTTCCTTGTTCCTGCTCCCTTCTGGCTGTAAAAGTCTTCCAT
--TTTGTACAGCTCCTCAGAGCTCCTTTCTATATGCTAGATTGGATGCTTCCTGATTCATGAATCACTGAATAAAGCCAA
TAAGATCTTTAAAATTTACTCAG---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------TTGAATTTTGTTTCTTAACA---CACC-
--CTTTGAAAGACACACAGTTCACCTTCCC-GGGGAATGTCTGCCTCTTTGCTAAGTCCCAGTCTTGGTCTCAAAAGTCT
>Myotis_myotis
CTGGGTAAAGGTGTTAATTGTTTTTCCTTTTGAGAATCC---------------------------------TCAGG---
TCA---CACC---TATT-AGAAACAAGACAACAGGCC-AAATAGAAAGTCGATAAT-------GCTAAGCACCATGTGAC
CAAACAGGAGA-CAACTTAATTACAGC-TCAGCTCTCC---AGAAGCGAATGTTAACCAGTCAACCAAGAACCACCTGAT
CAGCACTAGCTAGTTAGGTAACCTGCCTGAGAGGCC--TCTGCCGCCCTCTAAAGCAGGGGTGGGGAACACCTGGCCCTC
GGAATCATTAGGTCTGGCCCTGCCAAGGCATTAGGGGTGAGTTAATGAAATGTTTGACCAAATATAGCAGGCTAATTTAT
TTTTTAAAAAATATATATTTTTATTGATTTCAGAGAGGAAGGGAGAGGGAGCGATAGATAGAAACATCAAGGATGAGAGA
GAATCATTGATTGGCTGCCTCCTGCACGCCCCCTACATTGCATTCTTCTGCGTTTCTTTTCTGGGGTGGTGATGGGTATT
TGTGGTTTCTGTTTGTGGGAGGACACCACCAGCACACCACTGGGTAAGGGATACTCCAGGCAGTATGAAGTGGTGATCAT
ATAAAATATTGGTAGAAAATGATATTGAATGTCAACTGCAGTTGAAAAATAAATAGTGTTGATAGGCTTCCTGAAAGGAG
CCATCAGTTAGGCAACACACTGATCAGCCCACAACCTGGGCATGTGCCCTTGACCAGAATTGAACCTGGGACCCTTCAGT
CCGAAGGCTGACATTCTATCCACTGAGCCAAACCGGCTAGGGCTAGCAGGCTAATCTTTAAGCTGGTAATTTTGTGTGGC
CCTTGAAAGATGTTATAAATATCCAAATGGCCCTTGGCAGAAAAAGGTCCCACCCCTGCAGTCTAAAGGAAAGTGACCTT
GCAATAACCAGCCCAC------TTGTTGTTTAGTGTAACTTTCTTGTTTCCGCTCCCTTCTGCGTATAAAAGCCTTCCAT
--TTCGTCCCGCTCCTGGGAGCTCCCTTTTATCTGCTAGATGGGATGCCGCCCAATCCCCCAATCACTGAACAAAGCCAA
TACGATCTTTAACATTTACTTGG---------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------TTGAATTTTGTCCTTTAGCA---CATC-
--CTTTGAGAG--ACACAGGTGGCTCTCCTGGGGG---GTCTGGCTCTTTGGTAAGCCCCAGTCTTGGTCTCAAAGTTCT
>Pteropus_vampyrus
CTTGGTAAAGGTATTAATCGTTTTTCCTTTTAAGAAGAC---------------------------------TCAGGAGG
TCG---CACC---TGTT-ATAAACAAGACAATAGACC-AAAAGCAAGGTTGATTATTTATTTGTTTAAGTCCCATGTTAC
TAAACTGACACTTAA------------------------------GGAACCTTAAACTAGTCAACCAGGAATCACCTGAT
CAGTACTAGTTAGGTA----ATTGGCCCGATAGACC--CCTGCCATCC--------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------CCTAAAGGAAAGTGACCTT
GCAATAACCAACCTGC---ATTTTTTGGCCTAATATAACTTCCTTGTCTCCGCTCCCTTCTGCTTATAAAAGTCTTTCAT
--TTTGTCCAGCTCCTCAGAACTCCTTTTTATTTGCTAGATGGGTTGCTGCCCAATTCATGAGCCATTGAATAAAGCCAA
TAAGATCTTTAAAATTTACTCAATTTTTTTT-------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------TTTTTTTTTTTTTTTTAGCT---CACC-
--CTTTGAGAG--ACACAGTTCACTCTTGT-GGAGAATAGCTGGGTCTTTGGTAAGTCCCAGTCTTGGTCTCAAAGTTCT
>Canis_familiaris
ATTGGTACAACGG---ATCTGGTGACCTTCACAGAATCC---------------------------------CCCGGAGG
TTA---CACC----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--CTCTAAGAGACACAAAGATCAGTCTCCT--GGGAGTGGCTGGCTCTTTGGTAAGGTCCAATCTTCGTCCCAAAGGTCT
>Ailuropoda_melanoleuca
ATTGGTAAAAATGTTAACTGTTTTCTCTTTTCAGAATCC---------------------------------CCAGAAGG
GTA---CATC----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--CTTTGAGAGACACACAGTTCAATCTCCTGGGGGAGCGACTGACTGTTCGGTAAGTTCCAATCTTGGTCTCAAAGGTCT
>Manis_javanica
CTTGGTAAAGGTGTTAATTGTTTTCTCTTTTAAGAATCT---------------------------------CTAGGAGG
TTA---TGCC----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--CTTTGAGAGACATAAAGGTCACTCTCCT--GTGGATGCCTGACTC--TGGCAAATCCCAGTCTTGGTATGGAAGTTCT
>Condylura_cristata
CTTGGTA-AGGTG----TTGTTTTCCCTCTTAAGACGCC---------------------------------TCAAGAAT
TTG---CACC----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--TTTGGGGAGACACACAGCTCACGCTCCT-GGGAAATGGCTGACTCCTTGGTAAGTCCCAATCTTGGTCTCAAAGGTCT
>Solenodon_paradoxus
CTTGTTA-AGATGTTAATTATCTTTCTTTTTAAGAAGTC---------------------------------CCAGGAGG
TTA---CACC----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--CTTTGACTGACACACAGTACACTCTCTTGGGGGAAAGTCTGGCTCTTTGGTAAACCACAGTATTGGTTTCAAATGTCC
>Homo_sapiens
CATGGTAAATGTGTTAATTATTTTCTCTTTTAATAATTCTCTGTTTTTGTAGTGGGAAGTGAAAAAAAAATTCCAGGAGT
TTA---CACC----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--CTTTGAGGGACACACAGTTT-CCCTCCT-AGGGGCTGCCTGGCTCTTTGGTAAGCCCCAGTCTTGGTCTCCAAGGTCT



Pig4_LTR

>MLT1A0
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---TGCTATGGTCTGAATGTTTGTGTCC----CCCCAAAATTCATATGTTGAAA-CCTAATC-CCCAATGTGATGGTATT
AGGAGGTGGGGCCTTTGGGAGGTGATTAGGTC-ATGAGGGCGGAGCCCTCATGAATG----GGATTAGTGCCCTT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------ATAAAAGAGACCNCAGAGAGCTCCCTTGCCCCTTCCGCCATGTGAGGACACAGTGAGAAGGCGCCGTCTATG
AACCAGGAAATGGGCCCTCACCAGACACT-----GAATCTGCCGGCGCCTTGATCTTGGACTTCCCAGCCTCCAGAACTG
TGAGAAATAAATTTCTGTTGTTTATAAGCTACCCAGTCTATGG------------------TATTTTGTTATAGCAGCCC
GAACAGACTAAGACA-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------
>Sus_scrofa
-TGGACAGTCT---------------GCTTTTGTAAACAGATGACTCACA--------CACAAAAATCAA-ATATATTA-
--GG----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------TAGCAAAGAAAGTGTAATCACCAAAGCGAGATTCTAGGGG---CCTCCT-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------AAATTTTCAT-CAAG
------TATGGTCTGAATGTTTGTGTCC----CCACCAAATTCATATGTTGAAACCCTAATG-CCTGAGGTGATG---TT
AGGAGGTAGGGCCTTTGGGAGATGCTTAATTC-GCAAGGGCAAAGCCCTCATGGATG----GGATCAGTGCACTC-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------ATAAAGGAAGCCCTAGGGAGCTAGCTTGCCCGGTCCAGCATGTGTGGACACAGGGAGATGG------CTAGG
AAGCAGGAAGTGGGCTCTTACCAGCCACTACACCGTATCTGCCAGCACCATGATCTTGGACTTCCCAGTCTCCAGA-CTG
TGAGAAATAAATGTCTGTTGTTCATAAGTTACCCAGTCTGTGATTTTTTTTTTTTTTTTTTTTTTTTGTTCTACCAGCCT
GGAGAGACTAAGACA---AGTAGTAA---------AATAAGTATTATCACAAAAACGATATTTC----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------AGGGG-TCTTCAAAATCTGCTCAAAG---AA-CTCAC
AAATTCCCTTTATTC-----------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------AAGAAAGTTTCAGAATTAAAA-GACCATCCAA
>Bos_taurus
-TGAACAACCCAAGACATAGGTTTTTATTTTTGTAAGAACACTACT------------AACAAAAATCAA-ATATATTA-
--GGGGACTTCCCTGGCAGTCCAGTGCTTAAGACTCTGTCCTTCCAGTGCAGGGGGCATGAGTTCAATCCCTCATGAGGG
AACTAAGATCACCCATGCTGTGCAGTATGGCCAAAATTATATAAATAAATAAATAAATTGTTTAATAAAATCAAATATAT
TGGAGGCTTTCCAGGTGGTGCTAGTAGTTAAAAAAAAAAAAAAATCCACCCCAATGCAGGAGACGCAAGAAATGCAGGTT
TGATCCCTAGGTTGGGAAGATTCCCTGGAGAAGTAAATGGCAACACACTCCAGTATTCTTGCCTGGAAAACTACATGGAC
AGAGGAGCTTGGCAACTCCAGTCCATGGGGTCACAAAGAGCCAGACAAGACTTAGCATGAGTGCACGCACACACAGAGAT
ATGTTAGACGGTAAAGAAGATGTTATTACTAA-GTGATATTCTAGGAA---CCTCCTAGATTTGCTTTAAAGAAAAAAAA
AAAGTGAAATGAAAGTGTTAGTCACTCAGTTGTACCCGAATCTTTGCAACCCCATGGACTGTAGCCCACCAGACTCATGT
CCTCTGTCCACGGAATTTTCCAGGCAACAATACTGGGGTGAGTTACCGTTCCCTTCTCCACGGGAATCTTCTTGACTCAG
AGATCAAACCCAGGTCTCCTGCAGTGTAGACAGATTCTTTACCATGTGAGCCACCAGGGAAGCCCAAATTTGCCT-AAAG
------TATGGTCTAAATAGTTGTATCC----CAATCAAATTCATATAATGAAATCCTAATG-CCTGATGTGATAGTATT
AGGAGGTGAGGTCTTGGGGAGGTGCTTAGTTTAACAAGGGCAGAGCCCTCATGAATG----GGATTAGAGCCTTC-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------ATAAAGAAGGCCCCAGTGAGTTGGCTTGCCCCTTCCAGCAGGTGAAG--ACAGCAAGATGG------CTATG
AACCAGGAACTGGGTTCTCACCAGCCACTACACTGTATCCATTAGCACTGTGATCTTGAACTTCCCAGCCTCCAGA-CTG
TGAGAAATGAATGTCTGTTGTGCATAAGCTACCTGGTCTATGA------------------TATTTTGTTATAGCAGCCT
GGAGAGACTCAGAGA---GATAGCAA---------AGAAAATGTTATCACAAAA--TATATTCTAGGGGCCTCCGAGGGC
TTCCCTGGTGGCTCAGCTGGTAAAGAATTCTCCTGTAATGTGGGAGACCTGGGTTTTATCTCTGAGCTGGGAAGATCACC
TGGAGGAGGGCATGGCAACCCACTCCATATTTTTCCCTGGGGAATCCCCATGGACAGAGGAGCCTGGCAGGCTACTAGTC
CATGGGGTTGCAAAGAGGCAGATACAACTGAGTGACTAAGCACAGGGG-CCTCCTAAATTTGTTCAAAG---AAACTCAC
AAATTCCCTTTTTCCAAGAAAGATCCACCACTGTACAGCACAGGGAACTATATTCAATATTTTGTATTCACTATAAGGGA
AAAGCATCTGAATACAAAATACGTGTGTGCATAACTAAATCACTTTGCTGTACATTTGAAACTAACACAACATTGTAAAT
CAACTATACTACAATTTAAAAAAAAAATGTACATAAAAGAAAGTTCCACAATTTAAA-GACTGTCCCA
>Equus_caballus
-TGAACAACCCAAGAGATAGGTTTTGGTTTTTGTAAAAAGAAGACTAACA--------AACAGAGGTAAA-AACCATTA-
--GG----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------CAGTAAAGAAAACATTATCACAAAGGTGATATTCTAGGGG---CCTCCT-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------AAATTTGCTT-AAAG
------TACAGTCTAAATGTTTATGTCC----CTCCAAAATTCACATGTTGGAATCCTAATG-CCCGATGTGATGGTATT
AGTAGGTGGGGCCTTTGGGAGGTTATTAGGAC-ATGAGAGAGGAGCCCTCCTGAATG----AGATTAGTGCCTTT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------ATAAAGGAGGTCCCAGAGAGCTTGCTTGCTCCTTCCTCCAGGCGAAGACACAGCGAGAAGG------CTACG
A------AAGTGGGCTCTCACCAATGGCTACACCGAATCTGTCAGCGCCACGATCTTGGACTTCCTAGCCTCCAGA-CTG
TGAGAAATAAATGTCTGTAGTTTATAAGCTATCCAGCCTGTGG------------------TATTTTGTTATAACAGCCT
GAACAGACTAAGACA---GGTAGTCA---------GGAAAGTGTTATCACATGAGTAATATTCT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------AGGGG-CCTCCTACATTTGCTCAAAG---AAACTCAC
AAATTCCATTTTTTC-----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------TGAGGTTCCAAACTTAAAA-GACTGTCTAA
>Ceratotherium_simum
-TGAACAACCCAAGAGATAGGTTTTGGTTTTTGTAAAAAGACAACTAACA--------AACAAAGGTCAA-ATACATTA-
--GA----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------CAGTAAAGAAAATGTTATCACAAAAGTGATATTCTAAGAG---CCTCCT-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------AAATTTGCTT-TAAG
------TATGGTCTAAGTATTTGTGTCC----CCCTAAAATTTGTATGTAGAAATCCTAATG-CCCAATGTGATGGTATT
AGTAGGTGGGGCCTTTGGGAGGTGATTAGATC-ATGACGGTGGAGCCCTCATGAATG----GGACTAGTGCCCTT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------ATAAAGGAAAGCCCAGAGAGCTTGCTTGCACCTTCGACCAGGTGAAGACACAGTGAGAAGG------CTATG
AACCAGGAAGTGGGCTCTCACCAAAGGCTACATGGAATCTGCCAGCGCCATGATGTTGGAATTCCTAGACTCCAGA-CTG
TGAGAAATAAATGTCTATTGTTTATAAGCTATCCGGTCCGTGG------------------TATTTTGTTATAACAGCCT
GAATAGACTAAGACA---GGTAGTAA---------AGAAAGTGTTATCACAAAAGTGATATTCT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------AGGGG-CCTCCTTAATTTGCTCAAAG---AAACTCAA
AAATTCCATTTTTTC-----------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------AAAGAGGTTCCAGAATTAAAA-GACTGTCCAA
>Myotis_myotis
-TGAACAACCCAAGAGATAGGTTTTG------GTAAAAATAAGACTAACA--------AATAAAAGTCAA----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------AAAATTTTATCACAAAAGTGATATTCTAGTGATATTCTCCT-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------AAACTTGCTT-AAAG
------AACTATTTAAATGTTTGTGTCC----CCTCAAAATCCATATATTGAAATCCTAACACCCCAGTGTGACGGTATT
AAGAGGCAGGACTCTT-GGAGGTGCTTAGGTC-ATGAGGGTGAAGCCCCTATGAATG----GGATTAGTGCCCTT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------ATAAAGGAGGCCTCAGAGAGCTTGCTTGCCCC-TCTACCATGTGAAGACACAGAGAGAAGG------CTACA
AACCTGGAAGTGGGGCCTTATCAGCCACTATAGTGAATCTGCCTGCACCATGAC--------TCCCAGCCTCCAGA-CTG
TATAAAATAAATGTTTGCTGTTTTTAAGCTATCCAGTCTGAGG------------------TAGCTTGTTA---------
--ACCAACTAAGACA---GGTAGTAAAATAAAAATAAAAAATGTTATCACAAAAATGATA-TCT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------AGGGG-CCTCTTAAATTTGCTCAAAG---AAACTAAC
AAATTTCCTATTTT------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------AAGGAGATTCCAGAATTAAGA-GTCTGTCCAA
>Rousettus_aegyptiacus
-TGAATACCCCAAGAGATAGATTTTGGTGTTTGTTAAAATAAGACTAACAACAACAACAAAAAAGATCAA-ATACAAG--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------TAGTCAAGAAAATGTTATCTCGAAAGTGATATTCTAGGGG---CCTCCT-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------AAATTTGCTTAAAAG
------TGTGGTCAAAATGTTTGTGTTC----CTGCAAAATTCATATGTTGGAATCCTAATGCCCCGAAGCGAGGGAGTG
AGGAAGCAGGGCCTTTGGGAAGGGCTTAGGTT-GTGAGGGTGGAGCCCTCATGAAAGGCATGAATTAGTGCCTTT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------ATAAAGAAGGCCCCAAAGAGCCTGCTTGCCCCTTCACCTATG---AGACACAGAGAGAAGG------CTATG
AACCTGGAAGTGGGCCCTCATCCGCCATTACACCAAA-CTGGCTGCACCATGACCTTGGACTTCTCAGCCTCCAGA-CTG
TGTGGGATGAATGTCT--TGTTTTTAAGCTATCCAGCCCATGG------------------TATTCTGTCATAGCAGCCT
AAACAGACTAAGACA---TGTAGAAA---------AGAAAACGTTATCACAAAAATGATAGTCT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------TAAATTTGCTCAAAG---AAACTCAT
ATGTTCCCTTTTTTC-----------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------AAGGAAGTTCTAAAATTAAAA-GACTGTCCAA
>Canis_familiaris
-TGAACAACCCAAGGGATAAGTTTTAGTTTTTGT-A-AAGAAGACT------------AACAAAGGTCGA-ATACATTT-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------GGTAGTCA---------AGAAAATG---TCACAAAGGTGATATTCT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------AGGGG-CCTCCTAAATTTGCTAGAAG---AAACTCAC
AAATTTTCTTTTCTTTG---------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------AGGAGGTTTTCAGAATTAAAA-GACTGTCCAA
>Felis_catus
-TGAACAACCCAAGAGATAGGTTCTAGTTTTTGTAA-AAGACGACT------------AACAAAGGTTAA-ACACATTA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------GGTAGTGA---------AGAAAATGTTATCATAAAAGTGATATTCT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------AGGGA-CCTCCTAAATTTGCTCAAAG---AAACTCAC
AAATT---TTTTTCCGAGGAGGTTCCAGAACTAA----------------------------------------------
--------------------------------------------------------------------------------
------------------------------------AAGAAGGTTCCAGAACTAAAA-GACTG-CCAA
>Manis_javanica
-CGCGCAACCCAAGAGATAGGTT--------------AAAAAGACTAGCA--------AACAAAGGTCAA-ATACATTA-
--GT----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------TAGTAAAGAAAGTAGTATTGCATAAG-GATATTCTAGGGT---CCTCCT-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------AAATTTGCTT-AAAG
------TATGGTGTAAATGTTTGTGTCCCTCACTCCAAAATTCCTATGTTGAAATCCTAATG-CTCAGTGGGATGGTATT
AGGAGGCAGGGCCTTTGGGAGGCTT--------CAAAGGGTCAAGCCCTTATGACTG----GGTATAGTGCCTTTAAGAA
GAAGGACCCATGTGTGTCCCTCCCGAAGCTGCGCGCTCGGTCGAAGAGGACGACCTTCCCCGATAGAGGAGNGAAGAGGA
CGACCTTCCCCGATAGAGGAGGACCGTTCTTCGGTCAAGGGTATACGAGTAGCTGCGCTCCCCTGCTAGAACCTCCAAAC
AAGCTCTCAAGAAGAAGGCCCCAGAGAGCTTGCAGGCCCCTCCAACCATGTGAAGACACAGCAGAGAAG-------TCTG
AACCAGCAAATGGGTTCTTTCCAGCTACTACACTGAATCTGCCAGGATCACGATCTTGGACTTCC-AGCCTCTCAA-TTG
TGAGAAACAAATGTCTTTTGTTTATACGCTATCCAGTCTGTGG------------------TATTTTGATATAGCAGCCG
GAATAGACAAAAACA---GGTGGGAA---------AAAAAATATTATCACAAAAATGATATTCT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------AGGGGGTCTCCTAAATTTGTTCAAAG---AAACTCAT
AAATTCCCTCTTTTC-----------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------GAGAAGGTTCTAGAATTAAAA-GACTGTCCAA
>Condylura_cristata
-TGAAT----CAAGAGATAGGTTTTGGTTTTTGTAA-AAGATAGCTAAAA--------AGCCCTGGCCAA-ATACATTA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------GGGAGCAA---------AGAAA--GTTTTCATAAAAATGAAATTCT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------AGCGG-CCTCCTAAATTTGCTCAAAG---AAG-TCAA
AAAAATTAATTCTTCTA---------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------ATGGAAGTTTCAGAATTAAAAAAATTACCTAA
>Sorex_araneus
-TGAGCAATCTGAGAGGTTGAA------------------------------------AGCAGCTGTCACTTTGCATTA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------GATAGCAAA--------AGATGTTATTTTCACAAAATCAATAGTCC----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------AAGGG-TCTCCTAAATTTGCTCAGAG---AAACTCAC
AGACTCTCCTTTTTC-----------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------AAGGAGGTTCCAGAATTCAAA-----GTTCAA
>Homo_sapiens
-TGAGCAACCCAAGAGATAGGTTTTGTTTTTTGTAAAAAGAA----------------GACAAAGGTCAA-ACACATTA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------GGTAGTAA---------AGAAAATTTTATTACAAAAATGTTATTCT----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------AGGGG-CCTCCTAAATTTGCTCAAAT---AAACT-AA
AAAAATCATTTTTTC-----------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------GGGGAAGTTTTAAAGTTAAAA-GACTTTGCAA



Pig59_LINE

>L1MA9_3END
---------------------------------------------------------------------------AAGTT
TCAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGTACAGCATGGTGACTATAGTTAATAATACTGTATT------G
TATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCACCACACACAAAAAAATGGTAACTATGTGAGGTGATGG
ATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATAT
ATACAATTTTTATTTGTCAATTATACCTCAAT----AAAGCTGGAAAAA-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------
>Sus_scrofa
GTGTGTTCAGTAAACAATAGGCATTATTATCCTAGCACATTAGCTATCCATC---AAGAACCTATGTAGCTT--------
CCAGTTAT--AAAATAAATAAGTCCTGGGGATGTGATATATAGCATGGTGACTATAGTTAT---------ATT------G
TATATTTGAAAGTTGTTAAGAAAGTAGATCTTCAAAGTTCTCAGTGCAAGAAAAAAAATTGTGAC--TGTGTGATGATGG
--TTGTTAACTAGACTTATTGTGGTGATCAT-----AATATAGACAAATATCAAATCATGAAACTGTACACCTGAAGCTA
ATATAATGCTATATGTCCATTAGTATCTCATTTTTTAAAA------------AAGAAGTTAT----GTAGTT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------T---AA
AACCTATGCAAAACTAAGCGA-GAGAGATGATGTTTCTGC---AATTTGTCA
>Tursiops_truncatus
GTGTGTTCGATGAACAATAGTCACTGTTATCCTATCACAATAGCTATCCATT---AAGAACCTATGTAGCTT--------
CCAGTTAT--AAAATAAATAAGTCCTGGGGATGTGATGTACAGCACGGTGACTATAGTTAT---------ATC------G
TATGTTTGAAAATTGCTAAGAAAGTAGATCTTAACAGTTCTCATTGCAAGAAAAAAAATGG-GACTATGTGTGGTGATGA
--ATGTTAACTGGACTTATTGTGGTGATCATTTTGCAATATAGACAAATATCAAATCATTATATTGTACACCTGAAACTA
ATATAATGTTATATGTCAAATAATATCTCA--ATTTAAAA------------ATGAACCTAT----GTATTTAAAAACCT
ATGCAGGGGCTTCCCTGGTGGCGCAGTGGTTGAGAGTCTGCCTGCCGATGCAGGGGACATGGGTACGTGCCCCGGTCCGG
GAAGATCCCACATGCCGCGGAGCGGCTGGGCCCGTGAACCATGGCTGCTGAGCCTGCGCGTCCGGAGCCTGTGCTCCGCA
ACGGGAGAGGCCACAACAGTGAGAGGCCCGCGTACCGCAAAACAAACAAACAAACAAAAAAAAAAAAACGAAAAA---AA
AACCTATGCAAAACTAAGCAAGGAGAGATGATGTTCCTGC---AATTTATCA
>Myotis_myotis
GTGTATTCAGTAAATAATAGCCATTATTATCATATCACAATAGCTATCCATT---AAGAACCTATGTAGCTT--------
CCAACTGT--AATATAAATAAGT--------------------TATGGTGACTATAGTTAATAATATTGCATTGTACTAG
TATATTTTAAAGTTGCTAATAGAATAGAGCTTAACAATTCTTATTACAATAAAAAATAT---AACTATGTATGGTGATG-
--ATGTTAACTAGAC-----------ATCATTTCATAATATATACAAATATTGAATGATTATGTGGTATACTTGAAATTA
ATAT-----TATATGTCAATTAGTATCTCAATTTAAAAA-------------AATAACCTAC----ATAGTT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------T---AA
AAC--ATAAAAAATGAAGGAAGTAGGAATTGTGTTCCTGC---AATTTAAAA
>Rousettus_aegyptiacus
AGG--TTCAATAAACAATAGCCATTATTATCATATCACAATAGCTATCTATT---AAGAATCTATGTAGCTT--------
CTAGTTGT--AATATAAATAAGTCATGGGGATATAATGTACAGCATGGTGACTATATTTAATAATACTGTACC------A
TATATTTGAAAATTGCT--GAGAGTAGATCTTAACAGTTCTCATCACTAGAAAAAAATCTGTAAC----TGTGATAATGG
--ATCTGAACTAGACTTATTTTGGTAACCATTTCACAATATATACAAATATAAAATCATTATGTTGTGCACCTGAAATTG
TTATG-----------TCAACTATATCTCAATTTTAAAAACT----------AAGAATCTAC----ATAGTT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------T---AA
AATCTATGTAAAACTAAGCAAAGAGAGATTATGTTCCTAT---AATTCATTA
>Canis_familiaris
ATGTGTTCCATAAACAAGAGCCATTATAATCATATCACCACAGCCATCTGTT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------AAGAACCTAT----GTAGTT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------T---AA
AGCCAATGCAATACTGTACAAGGAGAGATTATATTCCTGC---AATGCATCA
>Felis_catus
GTGTGTTCAATAAATGATAGCCATTATAATCATATCACCATAGCCATCTGTT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------AAGAACCTAT----GTAGTT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------T---AA
AGCCAATGCAATACCAAACAAGGAGAGATTATGTTCCTGC---AATTTATCA
>Manis_javanica
GTGTGTTCAGTAA---ATAGCCATTATTATCATATCATCATAGCCATCTGTT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------AAGAACTTATTTATGTAGTT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------T---AA
TACCAAGGCAAAACTAA-CAAGGAGAGATGATGTTCCTGC---AAATTATCA
>Equus_caballus
GTGTGTTAAATAAACAAGAGCCGTTATTATCATATCACAATAGCCATCTGTT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------AAGAAACTAT----GTAGTT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------T---AA
AACTTACGCAAAACTAAGCCAGGAGAGACTGTGTTTCTGC---AATTTATCA
>Ceratotherium_simum
GTATGTTAAATAAACAATAGCCATTATTATCATATCACAGTAGCCATCCGTT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------AAGAAACTAT----GTAGTT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------T---AA
AACTTATGCAAAACTAAGCAAGGAGAGACTATGTTTCTGC---AATTTATCA
>Condylura_cristata
GTG--TTCAATAA------------------------CAACAGCCATCCTTG----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------CAGGACCTGT----GCAGTT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------T---AA
AACCTTTGCGAAACTAAAC----AGAGACGATGCTCCTGCTGAAATTGAGGG
>Sorex_araneus
ATGTGTTCAGTAAACAAAACCCATTGTGA---TATCACAATACCCTACTGTT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------ACGATCCTAT----GCATTT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------T---AA
ATCCTGTGAAAAACTAAGCAATGATAGACCACACTCCTGC---AATTATTCA
>Homo_sapiens
GTGTATTCAATAAACAACAGCCATT---ATCATATCACATTGGCTATCCATC----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------AAGAACTTAT----GTAATT--------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------T---AA
AACCTATGCAAAGCTAAAT-------GATTATGTTCCTGC---AATTTACTC



Pig84_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
------------------------------------TTTTTCCAGCTTT-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------ATTGA
GGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATATACGTATACATTGTGAAATGA
TTACCAC-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------AATCAAGCTAATTAACATATCCATCACCTC-ACATAGTTACCATTTTTTTGTG------------------
-----------------------------------------------
>Canis_familiaris
CCTCCCTGCCTT---CACTCAGTCAATCACCAAGGCTTTAAGCCAGTTCCCCTCCTTGCTCCT---CTCCTCCCTCCTGG
ACACCACCATCATCGTCCTCATTGTCATCGTTGTCATCTTGTTCTTTTTAAAGAAACTGACTAGTTA-------------
----CAATTTTAAA------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------ATTTA
GATATAGTTGACATGT-AACACTCTACTAGTTTAAAGTATACAGCATAATGATTTGATATTTGCATATATTGCGAAAGAA
TCACCAC-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------AAGAAGTCTGGCTAGC--TTCCACCACCACTGCAGAGTC-----------------ACCTTGACTTTCCAG
ATCTGG--CCCCTTCCTCTCTGTCCCAAAGCCAACCTCTGGGTTCAG
>Felis_catus
CCTCCCTGCCTTCTCCACCCAGTCAGTCACCAAAGCTT----CTGAGCCCGCTCCCCACTCCC-----------------
-----------------AGACATGGT-CTTTTTTTTTTTTTTTTTTTTTAGAGAAACTGATTAGTCAATATTTAAAAAAA
CAATTTTTTTTTAACATTTATTTATTTTTGAGACAGAGAGAGAGAGAGAGAGCATGAACAGGGGACGGTCAGAGAAAGAG
GGAGACACAGAATCTGAAACAGGCTCCAGGCTCTGAGCTGTCAGCACAGAGCCCGACGCGGGGCTCGAACTCACGGACCG
CGAGATCATGACCTGAGCCAAAGTCGGACCCTTAACCCACTGAGCCACCCAGCCGCCCCTAGTTAATATTTTTAAACTGA
GAGACAGTTGACATAG-AACATTCTATTAGTTTAAGGTGTACAGCACAGTGATTTGATATTTGCATATATTACGAAACGA
TCACCAC-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------CGTAAGTCTGGGTAAC--TTCCGCCACCACCGCAGCGTT-----------------ACCCTGACTTTGCAG
ATCTGGACCCTCCTCT---CCACCCGAAAGTCAACCTCTTGGCACTG
>Manis_javanica
CCTCACTGCCTT---CACCCAGTCAATCACT-AGGCTC---CTGGAGTCCACCCCCAGACCCT-----------------
--------------------------------------ACCTTTTCTTTAAGGAAACAAGCTGA----------------
-------TTTTTTAA-----------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------ATTGA
GATATAACCGACATAT-AACACTGTATTAGTTCAAGGTGTACAACATAATGATTTGCTCTATGTGTACATTGTAAAATGA
TCACTAC-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------CATAAGTCTAGTTAATGCATACA---CCAC-ACACAGGT-----------------ATCTTGAATCCCCTG
GTCTGGTCCCCCTTCTTTCT-CCCTTGCAGCCAACGTCTTGGTTCAG
>Sus_scrofa
CCTCACTGCCTT---CCTCCCATCGGTCATCAAGGCTC---ACGGAGTCCACTCCACATCCCT-----------------
----------------------------------CTTTTTTTCTTTTTTAAGGAAACAGATT------------------
-------TTTTTTA------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------ACTGA
AACATCATTGACATAT-AACACTGTGCAAGTTTAAGCTATACAACATAATGACTTGATATACACAAATACTATGACGTGA
TCACCAC-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------AATAAGGTCAGTTAAT--ATCCATTGCCAC-AC--AGTC-----------------ATCTTGAATCCCTGT
GTCCAG-TCCCCTTCTTTCTATCCCCACGGCCACCGGCTTGGTTCAG
>Tursiops_truncatus
CCTCACTGCTTT---CACCCCATCAATGGCCAAGGCTC---ACCGAGTCCACTCTTGGTCCCT-----------------
-----------------------------ACCCCCTTTTTATTTTATTGGAGGAAACTGATTAA----------------
-------TTTTTAA------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------ATTGA
GACAAAATTTACATAT-AGCATTGTGCAAGTTTAAGGTGTACAACATAATGA-TTGATATATGTAAATATTGGGAAGTGA
TCACCACAGTAAGATTAGTTAGGGACTTCCCTGGTGGTCCAGTGGGTAAGACTCCACGCTCCCAGTGCAGGGGCCCCGGG
TTCGATCACTGGTCAGGGAACTAGATCCCGCATGCATGCCACAGCTAAGAGTCCACATGCCACAACTAAAGATCCTGCGT
GCCACAACTAAGACCTGGCGCAGCCAGAATAAATAAATAAATATTACACACACACACACACACACACACACACACACACA
CACACACAAAATAAGATTAGTTAAC--ATCCATCACCAC-AC--AGTT-----------------ATCTTGAATCTCCAT
GTCTCGTCTCCCTTCTTTCTACCCCCGCAGCCACCGTCTTGGTTTAA
>Miniopterus_natalensis
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------ACACTGTATTTGTTTAAGGTGTACAACACAATTATCTGCTATCTGCACATAATGTGAAATGA
TCACCAG-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------TGAGCCTGGTTAAC--ACCCACCACCAC-TCATAACT-----------------ATCTGGAGTCTCCAT
GTCTCG-CCCCCTTTTTTCTGTCCCCACAGCCAGCATCTCAGTTCAG
>Pteropus_vampyrus
CCTCCCTGCCTT---CACCCAATCAATTACCAAGGCTT---ATGGAATCCACTTTTGCACCCT-----------------
------------------------------ATCTTTTTTTGTGGGGGAGAAGAAAACTGATTAAC---------------
-------TTTTTAA------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------ATTGA
GATATAATTGACATAC-AACATTGTATTAGTTTAAGGTGTACAACATGATGATTTGCCGTATGTGTATAATGTGAAATGA
TTACCAC-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------AATAAGTTTGGTTAAC--ATCCATCAACAC-ACA-AGTT-----------------ATCTTGAATCTCCAT
GTCTCGTCCCCCTTCTTTCTATCCCCGCAGCCAACACCTTAGCTCAG
>Equus_caballus
CCTCACTGCCTT---CACCCAATC----ACCAGGGCTT---ACTGAGTCCACTCCCGGAACCC-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------ATCTTGAATCCCCAT
GTCTCGTCGCCCTTCCTCCTGTCCCCACAGTCAACATCTCGGTTCAG
>Ceratotherium_simum
CCTCACTGCCTT---CACCCAATC----ACCAAGGCTT---ACTAAGTCCACTTCCGGAAACT-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------ATCTTGAATCTCCAT
GTCTATTCCCCCTTCTTTCCATCCCCGCAGCCAACGTCTTGGTTCAG
>Scalopus_aquaticus
TGCCACAGCCTC---------------CATGGAGGCTC---ATGGAGTGTCCTCCAGGGCCCT-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------CTCCTGAATCTCTGT
GCCTCA-CCCACATCT------------------CCTCTTGGTTCAG
>Sorex_araneus
CCGCACGGCCTT---CCCCCAGCCCATCAC--AGGCTC--------ATCCACTCTGGGATGCC-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------ATCCTGAATC-CCAG
GCCTCACGCCCTTTCT------------------CTCCTTGGTTGAG
>Homo_sapiens
CTACACTCCCTT---CACCCAGTCAGTCACTGAGGCTT---ACTGAGTCCACTCCCAGAACCC-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------ATCTCGAATCTTCAT
GTCTCA-TCTCCCTCTTACTATCCCTGCAGCCTATGTCTTAGTTCAA



Pig128_LINE

>L1MA9_3END
------------------------------------------------------------------------TTTTTCCA
GCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATATACGTATACAT
TGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTACCATTTTTTTGT-GTGTGGTGAGA
ACACTTAAGATCTACTCTCTTAGCAAATTTCAAGTATACAATACAGTATTATTAACTATAGTCACCATGCTGTAC---AT
TAGATCTCCAGAACTTATTCATCCTGCAT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------
>Canis_familiaris
TCATTCTGACTATATGAGAAATTGACAATATCTTATAAGTGATAAAAATA----T----AGC-TTTTTT-----------
--------GAGGTATATTTGAC------ATATTATATTCATTTCAGGTATAAAGCATAATGATTTGATATTTGTATATAT
TGTAAAATGACCACCACAGGAAGCCTAGTTAAC--ATCTATCATTATACATAGTTTAAACATTTTTTTCTTGTGATGAGA
ACTTTTAAGATCCATTCTCTTAGCAATTTTCAAATGTGCAATACTTTATTATAAACCATAGTCACCATGGTTTAC---AT
TATATTCCTATGAA------------------TTCAGGAGTTATTTT------G--TACTTAAAA---TAATCTAATAG-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------CA--GAAAAA----CTTAC--------
ACTGGAAGATGTTATTAGTATATCTGTTTTAGCCAAAA-----TATAATAATCTATTTTAACC-AAAAAAA
>Felis_catus
TCATTC----TGCATGAGAGTTTGACAATATCTTATAAGTCATAAAAATA----TCCATTGCTTTTTTT-----------
--------GAGGTATATTTGAC------ATATTATATTCATTACAGATATATAGTATAACGATTTGATATTTATATATAT
TGTAAAATTACCAGCACAGTAAGCCTAGTTAAC--ATCTGTCACCATACATAGTTTAAAAAATTTTTTCTTGTGCTGAGA
CTTCTTGAGATTTACTCTCTTAGCAATTTTAAAATATGCGATACAGTATTATTAACTACAGTCATCATGCTATAC---AT
TACATCCATATGAC------------------TTTAGAGGTTATTTT------G--CACTTAAAA---TAATCTACTAGT
TGGGGCACCTCGGTGGCTCAGTGGGTTAAGCATCTGACTTCGGCTCAGGTCATGATCTCGCAGTCCTTGAGTTCGAGCCC
TGTGTCGGGCTCTGTGCTGACAGCTCAGAGCCTGAAGCCTGTTTCAGATTCTGTGTCTCCCTCTCTCTCTGACCCTCCCC
CGTTCATGTTCTGTCTCTCTCTGTCTCAAAAATAAATAAATGCTAAAAAAAATTAAAAAAAAATCTGCTAGCAGAAAAAC
TTATGAAGATGTTATTAGTATATCTATTTTAGCCAAAATATAATAGTATAATCTATTTTAGCC-AAAAAAC
>Manis_javanica
TTATTCTGACTGTGTGAGAGTATGACAATATTTTGTAAGTTATAAAAATA---TTACATAGTTTTTCTG-----------
--------GAGGTAAAATTGAC------ATATT-----TATTCCAGGTATACAATGTAATGATTTGATATTTGTATATAT
TGTGAAATGATCACCACACTAAGTCTAGTTAAT--ATCTCTTACTATACATAGTTAAAAAATTTTTTTCTTGTGATGAGA
ACT--TAAGATTTACTATCTTAGCAACTTTCAAATATACAATATAATGTTACTAACTATAGACACCATTCTGTACATTAT
TACATCCTTATAAC------------------TGCATAGGATTTTTTTTT---G--TACTTAAAAAAATAATCTACTAG-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------CAG-AAAAANNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>Sus_scrofa
TCATTCTGATTGTATGAGAGTATGACAATACTTTTAAAGTTATAAAAATA----TTCATAGCTTTTTTT-----------
--------GAAGTAAAATTGACATAT-AGCATTATATTAGTCTCAGACCTACAACATAATAATTCCATATTTGTATATAT
TGCAGAATGAGCACCACAGTGAGTTTAGTTAAT--GTCTGTTACCATATATAGTTAAAACTTTTTCTTCATGTAATAAGA
ACTCTGAAGATTTACTCTCTTAGCAACTTGCAAGTTTGCAACACAGTATTATTAACAATTGTCACCATGCCATAC---CT
TATATCCTCATGAC------------------TTTGTGGGGTTTTTT------G--CACTTAAAA---TAATCTACTAG-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------CAT-GGGAAA----CTTTC--------
------ACATG--------------------------------TAGTGTGATCTATTTTAGCC-AAAAAAT
>Bos_taurus
TCATTCAGATTG----AGATTATGAC---ATTTTAAAAGTTATAAAAATA----TTCATAG---TTTTT-----------
--------GAGGCACAGTTGAT------ATATAACATTAATTTCTCATATACAACATAATAATTCTATATTTGTGTCTAT
TACAGAATGATCACCACATTAAGTCTACTTAAC--ATCTGTTACCATAGATAGTTAAAATTTTTTCTTCATGTGATG-GA
GTGTTTAAGATTCA--CTCTTAGCAACTTTCAAATTTACTAC----TATTTTAAACTATAATCACCATGCTATAC---CT
TAC-TCCCTATGAC------------------TTTGTAGTTTTTTCA------A--CACTT--------AACCTCCTTG-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------CAC--AGAAA----TGTAT------GC
ACAGAAAGATGCTATTG--------------------------CACTATAATCTATATTAGCC-ACAAGAT
>Equus_caballus
TCATTCTGGCTGTATGAGAGTATGACAATATTTTATAAGTTATAAAAATA------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------CTCATAGTTTTTTTT------GGGCACTTAAAA---TAATCTAGTAG-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------CAG-AAAAAA----CTTAC------CC
GTACTAAGATGTTACTG--------------------------TAGTATAATCTATTTTAGTT-AAAAAAT
>Tapirus_indicus
TCATTCTGGCTGTATGAGAGTATGACAATATTTTATAAATTATAAAAATA------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------TTCATAGGTTTTTTT------G--CACTTAAAA---TAATCTAATAG-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------CAGAAAAAAA----CTTAC------CT
GCACAAAGATGTTATTG--------------------------TAGTGTAATCTATTTTAGCCGAAAAAAT
>Myotis_myotis
TCATTTTGGGTGCATGAGACTATGACAATATTTTAT--GTTATAAATATA------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------TTCATAGCTTTTTTT------G--CACTTAAAA----AATCTACTCA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------CAG-GAAAAG----CTTAT------AT
GCAAAAACATGTTATTG--------------------------TTGTATAATCTATTTTAGCC-AAAATAT
>Rousettus_aegyptiacus
TCATTCTGGCTGCATGAGAATGTGATAGTGTTTT----GTTATAAAATTA------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------TTCATAGCTTTTTC-------G--CACTTAAAA---TAATCTAG----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------CAGAAAAAAA----CTTAC------AT
TAGAAAAGATG--------------------------------------------TTTTAGCC-CAATTAT
>Condylura_cristata
TCATTTTGGCTG--------TATGCCAGCATTTTAAA---TATAAATATA------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------TTCACAGCTTTTTT-------G--TAACTCAGA---TTATCTATTAG-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------TAA-AACAAA----CT-----------
-------------------------------------------TATAACAACTTAT--------AAAAAGT
>Scalopus_aquaticus
TCATTCTTGCTG--------TATGACAGTATTTTATAAGTTATAAATATA------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------GTCACAGTTTTTTT-------A--TACTTCAGA---TTATTAGCAAA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------AAA----CTTGC--------
---AAAAATTGTTATAG--------------------------TATTATCATCAATTTTAGTT--AAAAAT
>Homo_sapiens
TCATTATGGTTGTGTGAGAGTATAAC---ACTTTAT--GTTATAAAAATA------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------TTTATAACCTTTTTT------G--CCCTTAAAA---TAATCTACTAG-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------CT--GAAAAG----CTTTC-----CAC
ACACAAAGGTAATATTA--------------------------TAGTATAATCTATTTTAGCC-AAAAAAT



Pig133_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGT-ATATATTTAAGGTGTACAACGT
GATGTTTTGATATACGTATACATTGTGAAATGATTACCACA-----ATCAAGCTAATTAACATATCCATCACCTCAC---
-----------------------------------------------------------------------------
>Canis_familiaris
GAG-TTCCTACTTGATTTACTGGTTTGGGTATTTGGGTATTTATGATATTC--------------TTC---TTGAGAGAA
TACTGTCTT---TCTTTTTTCAGCTTTACTGAGGGATAATTGACTAAT-AAAATGGTGATATATTTAAAATTTAATTCAT
AGTGATTTTATATAAGTATACATTGAGAAAGGATTCTCACC-----ATTGGGTTAATTTACACATCCA------------
TTATGGACAGACACTGTCTT---GATAAGCTACTCAAGGACTGGAATTCTGTCTCTGAACCACA--GCCCTATAGCT
>Felis_catus
GAG-TCTCTACTTGATTCACTGGTTTGGGTATTTGGGTGTTTATGATATTC--------------TTC---TTGAGAG-A
TACTGTGTT-----TTTTTCTGACTTCATTGAGGTATAGTTGACTAAT-AAAATTGTGATATATTTAAA-TCTTCAACAT
GGTGACTTGATACATGTACACATTGTGAAAGGATTCTCACC-----ACTGAGTCA-------------------------
TTACAGAGAGAGACAGTCTT---CATAACCTACCCAAGGACTGGAATTCTGTCTCTGAACCACA--GCATCGTAGCT
>Manis_javanica
AAG-TCCCCACTTGATTCATTGGTTTGGGCATTTGTTTG-TTATG----------------------------------A
TACTGTCTC----TTTTTTTCAGTTTTTCTGAAGTATAATTGAC-----AAAGTTATAATATACTTAAAGTTTACAACAG
GATGGTTTGATACA--TATACTTTGTGAAGTAATTCCCACCGGCTAGGCTAGTTAATTAACATACCCA------------
TTACTGAGACAGACTGTCTT---GATCACCTACTTAAGGACCAGAAGACTGTCTCTGAACCATA--GCCCTGTAGCG
>Sus_scrofa
CAG-TCCCCACTTGAGTCACTGGTTTGGGGATTTGGGTGTTTATGACA-----------------TTC---TTGAGAG-A
CACTGTCTT---TGTTTTTTCAGCTTTATTGAGGTATAATCAAC-----AAAACTGTAATATATTTAAAGTTTA-AACAT
GATGATTTGATATATGTGTACATAATGAAAGGATTCCCACC-----ATTGAGTTAATTAACACATCCA------------
TTATGAAGA----ATGTCTT---GTTAACCTACCCAAGACCTGGAATCCTGGCTCTGAACCATT--GCACTGTAGCT
>Tursiops_truncatus
AAGTTCCCCTCTTGAGTCACTGGTTTGGGTACTTTGGTGTTTATGACATTC--------------TTC---TTGAGAG-A
TACTGTCTT------CTTTTCAGATTTGATGATGTATAAATGAC-----AAAACTGTAATATACTTAAAGTTTACAACAT
GATGATTTGATATATGTATACATCGTGAAAGGATGCCCACC-----ATGGAGTTA-TTAACACATTCA------------
TTACGGAGA----CTGTCTT---GTTAACCTGCCCAAGGACTGGAATCCT--CTCCGAACCAGA--GCACTGTAGCT
>Equus_caballus
GAG-TCCCCAATTGGCTCACTTGTTTGAATAATTGGGTATTTATGATATTC--------------TTT------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TTT-AGAGAGA--CTGTCTT---GATAACCTACCCAAGAGCTGTAATCTTATTTCTGAACCATA--GCACTATAGCT
>Ceratotherium_simum
GAG-TCCCCACTTGGCTCACTGGTTTGGATATTTGGGTGTTTATGATATTC--------------TTT------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TTG-AGAGAGA--CTGTCTT---GATAACCTACCCAAGGACTAGAATCCTGTCTCTGAACCATA--GCACTGTAGCT
>Myotis_myotis
GAG-TCCCCACTTGGTTCACTGTTTTGGGTATTTGGGTGTTTACAATATTA--------------TTC------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TTG-AGAAA----CTGTCTT---AATAACCCACCAAAGGACTGGAAGTCTATCTCTGAATCATA--ACACTGTAGCT
>Rhinolophus_ferrumequinum
GAA-TGCCCACTTGATTCATTGTTTTGAGTATTTGGATGTTTATGATATTC--------------TTC------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
CTG-GGAGA----TTGTCTT---GATAACCTACCAAAAGACTACAATCCCATCTCTGAACCATATGGCATTGTAGCT
>Crocidura_indochinensis
GAA-ATTCTATTTGGTTTACTTTTAAAGGTAATAGGTTGTCCATGATA--------ATCTTTATAATC------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------T
TTG-AGAGAGA--GTACCTT---AATTGTCTACCTAAGAGCTAGAATCTGGTCTCTATATTACA--GCATTATGGCT
>Sorex_araneus
TAAGATTCCACTTGGTTTGCTTGTAAAAGTA-TTGGGTATCTATGATGATCTATTTTTAAAACAATTT------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TTG-AGAGAGA--CTACCTT---AATAAATTATTCAAGCTCTGGAATCCTGCTTCTACCTGATA--GCAGTATC-CA
>Homo_sapiens
GAA-TCTCCAGTTGGTTTGCTGGTTTGGGCATTTGAATGCTTATGATA-----------------TTC------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
TTG-AGAGAGAGTCTGTCTC---AGTAACCTATTTAAGGGATGGAATCTTGTCACTCAACCAGA--GCACTGTAGCT



Pig144_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
-AAAAAATGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATAT
CAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA------
--------------------------------------------------------------------------------
---------------------------------------
>Sus_scrofa
GGAGAG-------TCTAC-T-GAAGTCCCTTGCAAACTCAAAGGGACCCCCCAC---A--TAGAAGGAAGGAGGTCTT--
-----------AACTATGCATGGTGACAG--ATGTTAACTAATTT-------GTATACATTTCCCAGTGTATACAAATAT
CAAAGCATTTTGTTGTACACTTGAAACTAATATAA-TGCCTTATGTCAATTATTCTTCAATAGA-------------AAA
AAAAGAAGGAGGAAGT---GGGAGTGGAGGAGG----------AGGGTGGAGCTGTGGG-GGTGACAGAGCAGGGAGG--
-GGAAACCCCACCCCACCCC--CAATTC--CCTCACCTG
>Tursiops_truncatus
GGAGA-------------------GTCCCTTGCAAATCCAAAGGGACCCTCCCC---ACCAGGAAGGAAGGAGGTGGT--
-----------AACTATGCATGGTGACAG--ATGTTAACTAATTT-------GTAGACATTTCACAGTGTATACAAATAT
GGAATCGTTATGTTGTATACTGGAAACTGACATAA-GGTTATATGTCAATTACGTTTCAATAAAAAAAAAAAG----GAA
GGAGTGGGAGTGAAGC----AGGGTGGA-----------------------GCTGTGGGAGGTGACATGAGTGGGGAG-G
GGCAATCCCCACTCCCACCCT-CAGTTC--CCTCACTTG
>Equus_caballus
GGAGATTCAAAGTTCTAC-T-AACATCCCTTTCAAACCCAGAGGAACCCTGC-----A--AAGAAGGAAGGAGGTTGT--
-----------AACCACGCATAGTGACAG--ATGTTAACCAAACTTATTGTGGTGATCATTTCACAATGTATCTAAACAT
CGAATCATTATGTTGTACACTTGAAACTAATATGA-TGTTATATGTCAAT-ATACTTCAATAAAAAAGAA---------G
GAA-------AGAAGT-------------------------------------TGTGGG-GGTGACAAGAGTGGGGAG-G
AGGAAGCCCCACCCCATCCCT-CAATTC--TCTCACCTG
>Tapirus_indicus
GGAGATCCAAAGTTCTAC-T-AATGTCCCTTGCAAACCCAGAGGAACCCTGC-----A--AAGAAGGAAGGAGGTTGT--
-----------AACTATGTACAGTGACAG--ATGTTGACTCGACTTATTGTGGTGATCATTTCACAATGCATATAAATAT
CAAATCAGTATGTTGTACGCCTGGAACTAATATAA-TGTTATATGTCAATCATGCTTCAATTAAAAAAAAAG-----AAG
GAA-------AGAAGT-------------------------------------TGTGGGGGGTGACAGGAGTGGGGAG-G
AGCAATCCCCACCCCACCCCT-CAATTC--CCTCACCTG
>Canis_familiaris
AGGGATTCAAAGTTCTAC-T-AATGTCCTTTTCAA-TCCAAAGAAAGCCTAC----------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------AAA
GAAGGAAGAAGGGTGT---GGGAGTGGA-----------------------GCTGTGGG-GGTAATAGGGGTGAGAAGGG
GGGCATCTCCAACCCC------TTGCCC--CCCTATCTG
>Felis_catus
GGAGATTCAAAGTTCTCC-T-AATGTCCCTTTCAA-CCCGAAGAAAGCCTGC----------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------AAA
GAAGGAAGGAGGGAAT---AGGGGAGGA-----------------------GCTGTGGG-GGTGACAGGAGAGAGGAG-G
GGGCATCTCCAGCCCATCCTC-CAATTC--CCCCACCTG
>Manis_javanica
GGAGATTCAAAGTTCTAG-G-AATCTCCTTT-------CAATTGAACCCTAC----------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------AAA
GAAGGAAGAAGGGAGG---AGGG-TGGA-----------------------GCTGTGGG-GGTGACAGGAAGAGGGAG-G
GGGCATCCCCC-----------CAATTC--CCTCACCTA
>Myotis_myotis
GGAGAACCAAATTTCTAC-T-CAAGTCCCTTTCAAGCCTCCAGGAACCCTGC----------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------------AGAG
GAAGGAGGGAGGGAGT---GGGGGTGGATGAGG----------AGAGGAAAACTGGAGG-TGCGGCAGGAGCCGCAGG-G
-GCGATCCCCACTCCACCCC--CAATTC--CCTCACCTG
>Rousettus_aegyptiacus
GGAGATTCAAAGTTTGAT-T-AATGTCCCTTTCAAACCCAAAGGAACCCTGC----------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------AAA
GAAGGAAGGAGGAAGT---GGGG-TGGGGGGAG----------AGGGGGAAACAGTGGA-GGTTACAAGAGCGGAAGG-G
-GGCATTCCCGCCCCACCCC--CAATTC--CCTCACCTG
>Condylura_cristata
GGTGATTCACAGTTCTACTT-AATGTCCTTTGCAAACCCCAAGAAACCCTAT----------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------AAG
GAAGGGAGGAGAAGGT---GGGAGTAGGTTAGAGGTT---------------------G-GGTAGCAGGAAGGGGATG--
-GAACTCCTCACCCCAGCACTGCAACTC--CCTCACCTG
>Erinaceus_europaeus
GGAAATTCAAAGTTCTACTTGAATGTTTCTTTCAATTCCAAAGAAACCCTAC----------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------AAG
GAAAAGAGGAGGAAGT---GGGGGTGGAGGG---------------------------G-GAGAACAGAGCTTGTAAG--
----------------------TATTTTAGACCTGCGTG
>Homo_sapiens
GGAGATTCCATATTCTAC-T-AATGTCCCTTGCAAACAAAAAGGAAGCCTGC----------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------------AAA
GAAGACAGGAAGGAGG---GGGCGTGGGGGAGGCAGGCAGCAGGGGGTGGAGAGGTGGG-GGTGGCAGGGCGGGG-----
----------------------CAATCT--CCTGACGTG



Pig149_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
-------------------------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATAT--ATTTAA
GGTGTACAACGTGATGTTTTGATATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACC
TCACATAGTTACCATTTTTTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAAATTT-CAAGTATACAATACA
GTATTATTAACTATAGTCACCATGCTGTACA--TTAGATCTCCAGAACTTATTCATCCTGCATAACTGAAACTTTGTACC
CTTTGAC----CAACATCTCCCCATTTCCCCCAC-------------CCCCCAGCCCCTGGCAACCACCATTCTACTCTC
TGCTTCTATGAGTTTG--------------ACTTTTTTAGATTCCACATATAAGTGAGATCAT-GCAGTATTTGTCTTTC
TGTGCCTGGCTTATTTCACTTAGCATAA--------------------------------------------TGTCCTCC
AGGTTCATCCATGTTGTCACAAATGGCAGGATTTCCTTCTTTTTTAAGGCTGAATAATATTCCA----------------
--------------------------TTG-------TGTATAT--------------ATACCACATTTTCTTTATCCATT
CATCCGTCGATGGACACTTAGGTTGNTTCCATATCTTGGCTATTGTGAATAATGCTGCAATGAACATGGGAGTGCAGATA
TCTCTTCGAGATACTGATTTCATTTCC-TTTGGATATATACCCAGAAGTGGGATTGCTGGATCATATGGTAGTTCTATTT
T-------------------------------------------------------------------------------
----------------------
>Canis_familiaris
AGCCACTCTTGAGCAATTCATATCTT---TAGGGTTCAGCTTCTT--CATTCGTT-AAAGGAATGTACCGTTAATTC---
---CTATGCTATAGA---GTTA------------TTTTATTGAACTACAGTTGACAAATA--------ACATTATTTTCA
GGTATAGAGCCTAAT---TTGATATTTGTATATATTATGAAATGGTCAGCACAA-TAAGTTTACTTA-ACATCCATCACC
TCACAGAGTTACAAGTTTTT--CTTGTGATGA-CATTTTTGAGAT----TTTCTTAGTAGCTTTCCAAATGTATAATACA
GTAT---TAACTATAGTCACCATGCTATACA--TTACATCTCCATGATTTATTC-------TTAACTGGAAGCTTGTACT
TCTTAACTTTTTTTTTTTTGCCTATTTTGCCCAC-------------CCTTCTAC----------CACCAATTTGTTCTC
T----TTGCGAGTTCATTGT----------GTTGTT-TAGATTCCACATGTAAGTGAGGCTATCACAGTATCTATCATTC
TCTG----ACTTTTTTCACTTAACAGAAAAGTTTTAAGAAAACTTTTAACAGAAAAAAGACAAGTTTTCACTAATCTTTA
AGGTCCATCCATATTGCTGCAAATGCTAATATTTCCTTTGTTTTTATGTCTGAGTAATATTCCA----------------
--------------------------TTAATATATCCATATATTAC-----------ATGTATTCTT-TCTTTATCCATT
CATCCATCAATCAACACTTAAGTTGTTTCTATGTCTTGGCTAATGTAAATAATGCTGCAGTGAATAT-GGAGTAC--ATA
GATATTTGAGTTGGTATTTTTGTTTCCTTTTGGATAAATACTCAGAAGTGGAATTGCT-GAG-ATGT-------------
----CTACCCTATGG----A---ATTTATTCATTTTACA-------GATTTTT----AGCATTTTCTATATTCTGG----
-------------GCTGTGCTC
>Felis_catus
AGTTACTCTTGAGCAATTCATATATT---TAGGGTTCAGTTTCTT--CACTTGTT-GA--GGAAGTTTTATTGTTAATTC
---CTACCCTATCAA---GTTC------------CTTTATTGAACTATAATTGAAAAATA--------ACTTTAGTTTCA
GGTATACAACATAAT---TTGATATTTGTACGTATTATGAAATGGCTACCACAG-CAAGCCCAGTTA-GCATCCATCACC
ACGTGTAGTTACAAATTTT---CTTGTGATGA-CACTTTTGAAATAAACTTTCTTAGCAGATTTCCAAATGTACAATTTG
GTAT---TAACTATAGTCACAATGCTGTACA--TTACATCCCCATGATTTTCTT-------TTACCTGGAAGCTTATACC
TTTTAAC----TATCTTT-GCCTATTTTGCCCAC-------------CCTTCTGC----------CACCAATCTGTTCTT
T------GTGAGTTCATTGT----------GTTGTT-TAGATTCCACATAGAATTGAGGCCATTATAGT-TTCATCACTC
TCTGATCAACTTTTGTCACTTAACATAA--------------------------------------------TTTCTTCA
AGGCCCATCCTGGTTGTTTCACAGGATAAGACTTCCATTGTTTTTATGGCTGAATAATATTCCA----------------
--------------------------TTAATGCGTGTGTGTATTTTAATTATGTATCACATATTTTT-TCCTTATCCATT
TATCCCTCCATCAACACTTAAGTTGCTTC-ATGTCTTGGCTATCGTAAATAATGCTGCAATGAATGTGGGGGTAC--ATA
CGTATTTGAGTTGGTGTTTTTGTTTCC-TTTGGATAAATACCCAGAAGCGAAATTGCT-GAT-ATAG-------------
----CTACCCTATAG--TTT---ATTTATTCATTTTGTG--------GGTTTTCCCCAGCA-CTTCTGTATTCTAGCACT
TTCTATATTCTGTGTTGAGCTC
>Manis_javanica
AGCCACTC--AAGCAATTCACATCTTCTCCAGGCTTTAACTTCCTAATATATATT-AAAAGAGTATATTATTAATAATCC
---CTACCCTATGGAGTTGTTT--------------TAATTGAAATTTA------ACATT--------ATGTTCATTTCA
GGTGTACAACGTAATGATTCAATATTTGTATATATTGTG-AGTGATCTCCA----CAAGTCTGCTTA-ACAAACATCACC
ACATATAGTTAAAGATTTT---CTTGTGATAAGAACTTTTAAGATCTACTTTCTTAGCAGTATT-CACATATAAAATACA
GTATTACTGATTATAGTCATCATGCTGTACA--TTACATCCCCATGACTTAATT-TATTTTATAACTGAAAGTTTGTACT
GTTTGAT----TACCTTC-ACCCATT---------------------CTCTCTATA---------CATCAATGTATTCTC
T------CTGAGTTCTTTTA----------TTTTTTTAAGATCACACATGTAAGTAAGATCAT-GCATTACTCATCTTTC
TCTGATGGAC--ATTTTATGTAGCCTAA--------------------------------------------TGCCTTCA
AGATCCATCTGTATGGTTGCAAATGGCAAGATTTCC-------TTATGGCTGAATAATATTCCAAATTATATACATACTA
TATATGTATATAGTTATACATTATATGTATTATGTTTGTATAATTTATGCAT-----ATATATAATTATTTTTATCCATC
CATCCATCAATGACCA--CAGATAGGTTCCATGTCTTATTTACTGTAAATAATGCTTCAGTGAACATGGGGGTGC--ATA
TATCCTTGGGTTAGTGTTTTCATTTCC-CTGAGATAAATATCCAGAAGTGAAATTTTT-GAT-ATGT-------------
----CTGCCTTGCAGAGTTT---ACTCATTTATTCTACACA-----AATTTTCTTTC--CAACTTCTATATTCCAGT---
-------AACTCGGCTGAGTTC
>Sus_scrofa
AGCTACTCTTGAGCAATTCCCATCTTTTCTAGGCTTCAGTTTCCT--CATTTGTT-AG--GAGTATACTAGTAATTA---
---CTACCCTATAAA---GATT--------------TTGTTAATGTATAATTGACATATA--------ACAATAGTTCTA
GG-GCACAAGATGAT--------AAGTATATATATTGGGAAATAATCA-------CATGTCTTGGTACATATCCATCAT-
TTATGTAGTTACAAATTTTT--CTT---ATGAGGACTTTTAAGATGTACTTTTTTAGC----TTTCAGACATATAATACA
CTATTTTTAACTGTAGCCACTGTGCTGTATACTTTT-------------------------ATAAATGGCAATTTGTATA
CTTCAAC----CACCTTC-ACCCAATTCAAACACCTAC---------CCTATTGCCTCTAATAGCCACCAATCTGTTCTG
T----CAATGAACTTAGTTT---TTTGTTTGTTTTTAAAAATTAGATATTTAAGTGAAATTAT-ACAGT------TTTTC
TCTGAATGACTTATTTCACTTAGCATAA--------------------------------------------TGAC-TCA
AGAGCCATTCATGTTGTTGCAAGTGGCAAGATTTCCTTC---TTCATGGCTGAATAATTTTCCA----------------
--------------------------CTA-------CATGTA---------------ATATACTATT-TTGTTTTCCACT
AATTCATTAATGGACA--CAAGTCAATTCCCTGTCTTAGCTTTTGTAAATAATGCTGCACTGAACATGGGGGTACATATA
TCCTTTTCAGTGAGTGTTT--ATTTCC-TTTAGATAAATACCCAGAAGTGGACCTGCT-GATTATATGT-----------
----CTGCCCTATAGCATTA---ATTC--------TATAGA-----AAATTT-----AATGCCTTCTATATTTCAGT---
-------CACTGTGTT-AGTTT
>Tursiops_truncatus
AGCCACTCTTGAGCAATTCACATCTTCTCTAGGCTTCAACTTCCT--CATTTGTT-AA--AAGTACACTAATAATTA---
---TTACCCTGTAAA---GTTT-------------TTTGTTGATGTGTAATTGACATATAAAATTAGTATATTAGTTTCA
-GTGTACAACATAATG-----ATATTTGTATATATTGTGAAATAGCCA-------CAAGTCTAGTTACACATCCATCAC-
-CATGCAGTTACAAATTTTT--CTAATGATGAGAACTTTTAAGATCTACTTTCTTAACAG-----CAGATATACAATGTA
GTATTATTAACTATAGTCACTACGCTGTACATTTTCCATCCTCATGAC-------------ATAACTGGAACTTTGTACA
TTTTGAC----CACCTTC-ACCCATTTCAACCCCCACACCCCTGCCACCTCCTGCATCTGGTAACCATCAACCTGTTCTC
TGTATCTATGAACTCAGTTTTTGTTTGTTTGTTTTT-CAAATTCCCCCTGTAAATAAGATCAT-ACAGTGTGTATCCTTC
TCTGTATGACTTATTTCACTTAGCATAA--------------------------------------------TGCC-TCA
AGGTCCATTCACATTGTTGCAAATGGCAAGTTTTACTTC---TTTATGGCTGAATAATATTCCA----------------
--------------------------CTA-------TCTGCA---------------ATGTATCACT-TTTTTATCCATC
CATCTATTGATGGATATTTAAGTTGCTTCTATGTATCGGCTATTGTAAATAACGCTGCAGTGAACATGGGGGTGCATATA
TATTTTTGAGTCAGTGGTT--ATTTCC-TTTGGATAAATAACCAGAAGTGGAATAGCT-GATTATATGT-----------
----CTGCCACACAGCATTT---ATTCATTTATTCTATAAA-----TAATTTT----AACACCTCCTATATTTCAGT---
-------TTCTGTGCTGAGTTC
>Equus_caballus
AGCCACTCTGGAGCAATTCACATCTTCTCTAGGATTTGACTTCCT--CATTTGTT-AAAAATGCATAC-ATTAATAATTC
---CTACCCTATAGA---GTTT----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------ATTCATTCATTCTACACA-----GGTTTTTTTTAAGCATCTTTCACATTCCAG----
---------------TGAGTTC
>Ceratotherium_simum
AGCCACTC------AGTTCACATCTCCTCTAGGGTTCGACTTCCT--CATTTGTCAAAAAAAGCATGCTATTAATAATTC
---CTACCCTATAGA---GTTT----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------ATTCATTCATTCTACACA-----GGTTTTTTTT-AGCACCTTCCATATTCCAG----
---------------TGAGTTC
>Myotis_myotis
AGTCACTCTTTAGCAATT-ATATCTTCTCTAGGC-TCAACTTCCT--CATTTGTT-AA--GTATATACTATTAATAATTC
---ACATCCTATAA-------C----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------ATTCATTTATTCTAGACA-----GATTTTT----TATATCTTCTATATTCCAGT---
-------GACTATGCTGAGTCC
>Rhinolophus_ferrumequinum
AGCCACTCTTTAGCAATTCACATCTTCTTGAGGCTTCAACTTC-----ATTTGTT-AA--GAGTATACTATTAATAATCC
---CTACCCTATAAA---GTTT----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------ACTCATGCATTCTACACA-----TATTTTTTAA-AGCATCTTCTATATTCCAGT---
-------GACTGTGCTGAGTCC
>Condylura_cristata
AGCCACTCT--------------------TAGGCTTCAATAACTT--CCTTTGTT------AGTCTACTTGTAATAATCC
---CTACTCTATGGA---GTTT----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------ATTCATTACTTATATACA-----AGTTTTTC---AGCACCCTTTCTATTCCAGA---
-------CACGGTGTAGATATC
>Erinaceus_europaeus
AGCCACTCTCAGGCACTATATATCTTCTTTGGGCTTCAACTTCTT--CACTGCTT-----AAAAAATCTATTATTAATTT
---CTACCCTATGGA---GTTT----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------ATTAATTC-TTATACCAG-----TTTTTGTTTTTAGCACTTTACATATTACAGT---
-------GACTGAGTAGAATTC
>Homo_sapiens
AGCCACTGTGGGGCAATTCACATCTTCTTTGTGCTTCAATTTCCT--CATCTGTT-AACCGAGTATCCTATTAATACTTC
---CTTCCCCTTAGA---GTTT----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------ATTCATTCATTCTACAGTTTTGTTATTTTCTTTCAGCACCTTCTTTATTCTAGT---
-------TGCTATACTGAGTTC



Pig186_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------TAAGAGAGTAGAT----CTTAAGTGTTCTCACCACACACAAAAAAAT------GGTAACTATGTGAGGTGA
TGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAA
TATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA--------------------------------
------------------------------------------
>Sus_scrofa
TTTGCTTCTCTTAGCTGGGAATCCAACATTTTTGGATTTTGTTTTGGATTTTTTGTTTTTTAC-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CAACTTTGGATCA---ACATT-CAT
TGTGGG-------------GAT----CTCAAACATTCTCATCACAAGAAAA-----------TATAACTATTTGTGGTGA
CTG--ATGTTAACTGGACTTATTCTGGTGATCACTTTACAATATATACAAATATCAAGTCATTATGTTGAACACATGCAA
CTAATATAATGT---AATGTCAGTTATACCTCCATA---------AAA---AGATCCATTGCAAG---TACCTTTCTTGG
TGTGC--------TAAATTATTCCACTTTGACTTTTCCTGTA
>Bos_taurus
TTTGCTTCTTTTAGCTGGGACTCTGACTTTTTAA---------TTTCTTTTTTTTTTTTTTAC-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CAACTTGGCATCA---AAATC-CAT
TGCAAG-------------GCTGTTGATTGAACTTTCTCATCACAAGAAAAAAAAAACACATTGCAATTAAGTGTGGGGA
CAG--ATGTTAACTGGACTTACTATGGTGATCACTTTGCAATATATACAAATATTGAATCATTATGTTGTACATTTGAAA
CTA-----ATGT---TATGTCAGTTATACCTCAATAA--------AAA---AAATCCATTGTGGG---TACCTTTCTTCA
TGT----ACTGATTAAAACATTCCACTTTGACAGTTCCTGTA
>Equus_caballus
TCTGCTGCTCTTAGCTAGGAATCCA---------------AAGATTTTCTTTTTGTTCTTTAC-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CAACTTTGCATCA---AAATA-CAT
TGCAGG-------------GAT----CTTGAAAGTTCTCATCCCAAGAAAACAAATTC----TGTAACTGTGTATGGTGA
CGG--ATGT--GCTAGACTCATTGTGGTGATCATTTTATAATATATCCAAATATCAAGTCATTATGTTGCACACCTGAAA
CTACTAGGATGT---TATGTCAGTTGTACCTCAAGAATAATAATAAAA---AAATCCACTGCAGG---TACCTTTCTTCA
TGTACCATCGAATTAAATTATCCCTCTTTGACTTTTTCTGTA
>Ceratotherium_simum
TCTGCTGCTCTTAGCTAGGAATCCA----------AACAGTTTTGTTTGTTTGTTTGTTTTAG-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CAACTTTGCATCT---AAATC-CAT
TGCAGA-------------GAT----CTTGAAAGTTCTCATCACAAGAAAAAAATTC-----TATAGCTATGTATGGTGA
CGG--ATGTTAACTAGACTTATTATGGTAATCATTTTGCAATGTATACAAATATCAAGTCATTAGGTTGTACACCTAAAA
CTAAT---ATGT---TATGTCAGTTGTACCTCAATAATAATAAT-AAA---AAATCTGTTTCAGG---TACCTTTCTTCA
TGTGCCACCTAATTAAAATATCCCTCTTTGACTGTTTCTATA
>Canis_familiaris
TCTGCTTCTCTTAACTGGGAATCCA--------------------------TTTTTTTAAGAC-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CAACTTTGCATCA---AAATC-CAT
CGCAGG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------TATCTTTCATCA
TGTGCCATCTAATTAAAATAACCCTTTTT-----TTTCCATA
>Mustela_putorius_furo
TCTGTTTCACTTAGCTGGGAATCCAAC------------------------TTTTTTTTTTTT-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CAACTTTGCATCA---AAATC-CAT
TGCAAG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------TAACTTTCATCA
TGTGCCATCTAATTAAAATATCCCCCTCT-----GTTCCATA
>Manis_pentadactyla
TATATGTCTCTTAGCTAGGAATCAA----------------------------AATATATAAC-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CAACTTTGCATCA---AAATC-CAT
TGCAGG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------TACTTTACTTCC
TGGGCTATCTAATTAAA-TATCCCTCTCTGACTGCTCCTATA
>Myotis_myotis
TCTATTTTCCTTAGCTGAGAATCCT---------------TTTTTTTCTTTTTCTTTTTATAC-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------AAACTTTGCAGTG---AAATC-CGT
TTCAGG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------TACCTTTCTTCA
TATGCCATCTAATTAAATTATCTGCTCTT-ACTGCTCCTATA
>Rousettus_aegyptiacus
TCTACTTTTCTTAGCTGGGAATTCA-------------------ATTCTTTTTTTTTTTTTAC-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CAGCTTTGCATCA---AAATT-CAT
TGCAGG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------AAACTTTCTTCA
CATGCCATCTAATTAGAACACCCTCTCTG-----TTCCTATA
>Condylura_cristata
TTT------CTTACTTGGGAGTTCA-------------------TCAAAGATTATGATTTAAGAAAG-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CAACT--GCATCA---AAATC-CAT
TACAGG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------TGTCTTTCTTCA
TGTGTGTTCTTATTACAATATTCTTCTTTCACTCTTCGTATA
>Sorex_araneus
TTTTTTTTTGTCAGTTGAGAATCCA-------ACTGAAGTGTTTTTATCTAGATATGTATTAAAATGCACTGTGGTCCAT
GATGACCTCTCAGTATATGTGTTGCAAGCCATAATGCCCCAAAGTAGAGAGTATGGGGAATATTGTCAGCCATTAAGTCA
GGGGGAGGTTGGGATAGGGGGGTATACTGGGGATATTGGTGGTGGGGAATGTGCACTGGTGGAGAAATAGCTGTTTGATC
ATTATGTGATTGTAACGCAAACATGAAAGCCTGTAACTATTTCACGGTGATTCAATAATTTTTTTTAA---AAAATGCAC
TGTGGA--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------TATCTTTGTTCT
TGTGCTACCCAATTGAAACGTTCTCTTTTCA-TATTCCTATA
>Homo_sapiens
CCTGCTTCTCTTAGTTGGGAGTCCA--------------------------TATAGTTTTTAC-----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------CAACTTTTCATCA---AAAGC-CAT
TGCGGG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------TAGCTTTCTTCA
TGTATCATCTAATTAAAATATCACTCTGAGACTGTTCCTACA



Pig240_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------GGGGTGGGGGAA
ATGGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGATCT---AATGTACAGCA
TGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCACCACACAC
AAAAAAATGGTAACTATGTGAGGTGATGGATATGTTAATTAG------CTTGATTGTGGTAATCATTTCACAATGTATAC
GTATATCAAAACATCACGTTGTACACCTTAAATAT-----------------------------------ATACAAT---
------------------------------------------------------TTTTATTTGT--CAATTATACCTCAA
T-------------------------------------------------------------------------------
---------------AAAGCTGGAAAAA----------------------------------------------------
----------------------------------------
>Sus_scrofa
ATAGCCAGC-TTTCTCTGCTTAGACATTTTCATTCAAATGT---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TCAGTCTC---AGAAATAGCT-------------GG
TTAGGACTGATGTTGTTTAATGGTACAAACATGAACCCA---GTGACAAGTGCATCCTAGAGAGCT---CATGGACACTC
TAGTGAACATAGGCAACAATATTGTATTATAATCATCAAACTTGCTAAAAGACTAGATCTTTG-TATTTCCAACCACTTA
AAG--------AATTAGGTGACTTGACAAAGGTGGTAATTATCAGTCATAATATGCCGTAAATCATAGTATA--CTATAA
ATATATCAAAATAACACATCATA-ACCTT-AATATAGGAGTTCCTGTTGTGGCTCAGCAGGTTAGTGTTCATGAGGATGC
GAGTTCGATCCCTGCCTCATTCAGTGGGTTAAGCATCCAGTGTTGCCACAGCTGTGGTGTAAGTCACAGATACAGCTCAG
ATCTGGTGTGGCTGTGGCTGTGGTGTAGCCTGGTAGCCAAAGCTCCAATTTGCCCCCCAGCCTGGGAACTTCCATATCCT
CAGGAGCATCTCTAAAAA---GGAAATAAATAAATAACT---AGAAA--------AATAATATAACTCTCTA--------
---AGAAAAGTTGAGAAATGGC-TACCCTC--TGGTTTAA
>Vicugna_pacos
GCAGCCAGC-TTTCCCTGTTGAGGCATTTTTGTTCAAATGT---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TTATTCTT---GAAAATAGCT-------------GG
ATAGGACAGAGGTAGTTTGAGGGTAAGAACATGCAACAA---GTGACAAATACATCCTAGAGCTCT---AATGCACACTG
TAGTGAATGTAGGCAACAGTGTCGTCATATAATCATCCAACTTACTTAGAGACTAGATCTTAA-TATTTCCAGTCGCTGG
AAAGAAATGATAATTATGTGATGTGTTAAAGATGCTTATTAT------TACTACAACGGCAATCATATTCTAACATATAA
ATGTATCAGATTAATATGCTGTACATC-------------------------------------------ATACAGACGC
AA----------------------------------------------------CATTCTAAGT--CAAATATAATTCAG
T-------------------------------------------------------------------------------
---------------TAA---AGAAACA--------------AGAAGTAGCT---GATGATCCAACTCATTA--------
---AGGAAAAACCAAAAATGGC-TGCCTTCTTTGGTTTCA
>Condylura_cristata
GTAGTTTGC-TTTCACTATTGAAATAGTTTTATTTAGGTAG---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----GACAGATGTTGTTTAAAGGTACAAACTTGCACTGA---GTGCAAAGAAAGCCTTAGAGATTT---AATACTCTAAA
TTATGATTAGAGACCAGAGTATTCTACTACA--TATCAAGCTTACTAAGAGACTAAATGTTAA-TGTT---------AGA
AAAAAAATGATAGTTATATGACTTGATAGAGCT-CTAATTAT------CACAATAGTGGTGATCATATTACAATATATAA
AGGTATCAAACTAATTTGTTGTATACCTT-AATAT-----------------------------------ATACAG----
------------------------------------------------------TACTGTATGT--CTGGTGTATTTCAG
T-------------------------------------------------------------------------------
--------------AAAA---AGA------------------AGAAATAGTT---AATGATTCAACTCATCA--------
---AGGAAAACTTAGAAATAGC-TGGTTT-------TTAG
>Erinaceus_europaeus
GT-GTCATC-TTTCACTGTTGAGATATTGTTGCTCAGTTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTAGTTCAGGCTT
CATACATGCATGATTTCACTGATCCCAGGCCTCTATTTCAATTTATATAGAGATGCAGAGAGTGAAACGGAGAATAAAGC
AGAGATATCACAGAACCTCATCTTCCTCCTGGAACTCCCCATGTGGTACCTGGATTTAAAGCTGGACAGGGTATATAGAA
AGGCATATGTCATATGCAGTGAACTATCTTACTAGTTACAAATGTCAGTTTC---ATAAATATCT-------------GG
ATGAGAAAACTGTAATGTAGGAGTAC-ATCTAGCAATGA---ATTGTAAATTAAGTCTTGAGATCTGAAAATGCAA----
-AATGAGTATAGATAATGATAGTGTATTATAATTCTCAGATTTACTAAGAG-----ATCTTAA-TATTTCCAGAATCTAA
AAA------ATAATTATGTGCCATGAAAGAGGCACTA-----------TACTATAA----AAT--TATTACAGTATATAC
ATTTA----ATTAACATTCTGTACGCCAT-AATAT-----------------------------------ATAC------
------------------------------------------------------TGTTTTATAT--CAAATAAGTTTCGA
T-------------------------------------------------------------------------------
---------------AAC---AGAT-----------------TGAA--AGT----GATAATGTAATTC------------
----------ATGAGTAATGGCATGTTCTCTTTGTCTTAA
>Canis_familiaris
GGACTCGGCTTTTTCCTGTTGAGACAACTCTGTTTAAGTGT---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TTATTCTT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------AGAAATGGCT---GATGAT-CAACTCATCAAAAAATAT
GGGAAAAAATATGAGAAATAGC-TATCCCATTTGCTTTGA
>Felis_catus
GGAGTCAGT-TTTCTCTCTTGAGACACCTTT-TTCAAATAT---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TTAGTCTT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------AGAAATGGCT---GATGATCAGACTCATCA--------
---AGAAAATATAGGAAATGGC-TATCCTGTTTGTTTTTA
>Manis_javanica
GTAGTCAGC-TTTCTCTGTTGAG-CATTATAGT-CAAATGT---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TCAGCCTT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------AGAAATAGCT---GATGATACAGCTCA-----------
---AGAAAAAATGAGAAATGGT-TGTTCTCTTTGTTTCAA
>Equus_caballus
GCAGTCAGC-TTTTGCTGTTGAGATATCTTTGTTCAAATGT---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TCCTCCTT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------AGAAATAGCA---GATGATCCAACTCATCA--------
---AGAAAAAATGAGAAATAGC-TGTTCTCTTTGGTCTAA
>Tapirus_indicus
ATAGTCAGC-TTTTGCTGTTGAGATATCTTTGTTCAAATGT---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TCATTCTT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------AGAAACAGCT---GATGACCCAACTCATCA--------
---ACAAAAAATGACAAATGGC-TGTCCTCTGTGGTTTAA
>Myotis_myotis
GCAGTCAGC-TTCCCCTCTTGAGACATCTCTGTTCAAA-AT---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TCAGTCTT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------AGAAACAGCT---GATGATGCGACTCCTCA--------
-GGAAAGCAAATGAGAAATGGC-TG-CCTCTTTGGACTAA
>Rousettus_aegyptiacus
GCATTCAGC-TTTCTCTATTGAGAAATCTTTGTTCAAATGT---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TTAGTCTT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------AGAAATAGCT---AATAATCCAACTGATCC--------
-AGAAAAAAAATGAGGAATAGA-TGCCCTTTTTGGTTTAA
>Cavia_porcellus
ACAACCAA-------CTGT---GACATCATTGTTCAGGTAT---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------TCAGTTTT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------ACACACAGCT----ATGAGCCAACTA------------
---TAAAAAACTGAGAAGTGGC-TCCTGTCTTTGGTTTGT



Pig254_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
--------------------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTAC
AACGTGATGTTTTGA----TATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCA
CATAGTTACCA------TTTTTTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAAATTTCAAGTATACAATA
CAGTATTATT-AACTATAGTC-ACCATGCTGTACATTAGATCTCCAGAACTTATTCATCCTGCATAACTGAAACTTTGTA
CCCTTTGACCAACATCTCCCCATTTCCCCCACCCCCCA------------------------------------------
-------------------------------------------
>Sus_scrofa
TTTATTAAAT----ATCTGCTGATTTGTT-AAATATTTATATACCTTCCTGA--AC--TAA---CATCCTTTTGTTCTCC
-------------------------TTTTTTTTATTGAGGTGTAATTGACATAT-AACATTA-ATGAGTTTCAGGTGTAC
AGCATAATCATACAA----TATTTGTATATAGTGCAAAATGATCACCGCAATAA-------------GTTTTTCACTATA
C--AGTTAGAATTA---TTTTTTTCCTTGTGATGTGAACGTCTAGGATCTGTTCTTTTAGTAACTTGCAGATAAGCAGCC
CCGGATC---------------ACCATGCTGTACATTACATCCCAGTGACACAGTTATTTT--ATATCTGGAAATCTGTA
CCTTTTGACCCCCCTCACCTTGTTCTT--------------TGTGGTTTTT-----------------TT---TAAGCCA
CTGGATGTGGACAAAGATTCATCTCTAGTGACCCTTTGTTATG
>Bos_taurus
TTTTTTAAATAGAT-TTTTCTGATTCGGT-AAATACTTATATACCATTCTGATAAG--TAA---TATTCTTTTGTTCTTT
------------------------------TTTATTGAGATATAATTGACATAC-AACATTA-ATTAGTTTCAGGTATAC
AGCATAATGATTTGA----TATTTGTATATATTGCAAAATGATCACCACAATAGCTCTAGTTAAC--ATCCTTCATCATA
C--AGTTACAGAATT--ATTTTTTCCTTGTGATGAGAAGTTACAAGGTCTACTCTCTTAGTAACTGTCAAATATGCAGTA
TAGTATTACTAAACTGGAGTCAACCATGCTATACATTACATCCCCATGACTTACTCATTTT--ATAAGTGGAAATTTGTG
CC-TTCAACCCCCTTCACCCTGTTCCT--------------TGTTTTCTTTCTTTTTTTTTTTTTTATTT---AAAGCCA
CTGGATGTGGACAAAGATTCATCTCTGGTGACTCTTTGTTATG
>Equus_caballus
TTTATTAAATAGATATCTTCTGATTTGTT-AAATACTTACATACTTTTCTGATAAC--TAG---CATTTTTT-GTTTTTT
----------------GCTTTTTTTATTTTTTTATTGAAGTATAATTGGCATAT-AACATTATATTAGTTTCAGATGTAC
AACCTAATGATGCGA----TATTTGTGTTTGCTGTGAAATGATCACCACAATAAAGCTAGGTAAC--ATCTATCACCATA
CGTAGTTAAAAAAATACATTTTATCCTTGAGATGAGAACTTTTAAGATCTACTC-CTTAGCAATGTTCAAATATGCAATA
CAGTATTACT-AACTATAGTC-ACCATGCTGTACGTTATATCCCCATGACTGACTTATTTT--ATAACTGGAAGTTTGTA
CCTTTTGACC--------TCTGTTCTT--------------CGTTTT---------------------TT---AAAGCCG
GTGGATGTAGACAAGGATTCCTCCCTGGTGACTCTTTGTTATG
>Ceratotherium_simum
TTTATTAAAT-GATATCTTCTGATTCGTT-AAATACTTATATACCTTTCTGATAAC--TAA---CATTCTTT-GTTTTTT
----TGTTGTTTGTTTTTCTTTTTTCTTTTTTTATTGAGGTATAATTGGCATAT-AACATT--ACTAGTTTCAGGTGTAC
AACATAATGATTCGA----TATTTGTGTATGTTGTGAAATGATCACCAAAATAAGGCTAGGTAAC--AGCTATCAGCATA
CATAGTTAAAAAAAT--TGTTTTTCCTTGAGATGAGAACTTTTAAGATCTACTCT-TTAGCAACTTTCAAATATGCGATA
CAATATTACT-AACTATAGTC-ACCATGCTGTACATTACATCCCCATGACTGACTTAGTTT--ATAACTGGAAATTTGTA
CCTTTTGACC-------CCCTATTCTT--------------TGTTTTTT-------------------TT---AAAGCCA
GTGGATGTAGACAAAGATTCATCCCTGGTGACTCTTTGTTATG
>Myotis_myotis
TTCATTAAATAGATATATTCTGATTTGAT-AAATACATATATACCCTTTTGATTAT--TAA---CATTCTTT-GTTTTTC
----------------------------TTTCTTTTGAGGTATAATTGACA------------------TTCAGGAGTAC
ATCATAATGATTTTG----TATTTGTATATATTGCAAAATGGTCACCATCATAAATCTAGTTAAC--TTCAATGACCACA
C--AGTTATAAA-----TTTTTTTCCTTGTGATGAGAACTTTTAACATC---TCTCTTAACAATTTCCAAATGTGCAATA
TGGTATTGCT-ACGTACAGTC-AC-------TACATTAAATCCCCATGACTTACTTATTTT--GCAACTAGAAATTTGTA
CCTTTAGGCCTCCTTCACTCTGTCTTT--------------TGTTTCTTTTTTGTTGTTGTTTGTTTTTT---TAAGCCA
CTGGATGTGGACAAAGATTCCTCCCTGGTGACTCTTTGTTATG
>Rousettus_aegyptiacus
TTTATTAAAT----ATATTCTGATTTGTT-AAATACTTATATACTTTTCTGATTAT--TAA---TGTTTTTT-ATTTGTT
--------------------------TTTGTTTTTTGAGGTATAATTGACATAT-AACAT---ATTGTTTTCAGGTATAC
AACATAGTGATTCAATCAGTATTCATATATATTGTAAAATGGTTATCACAATAAAGCTAGTTAAC---TTTGTAACCACA
C--AGTTACATCT----TTCTTTTTCTTGTGATGAGAACTTCTAAGCTCTACTCTC--AACAACTTTCAAATATGCAATA
CAGTGTTATT-AACTATAGTC-ACCGTACTGTACATTACATCCCCAGGAC----TTATTTT--ATAGCGGGAAATTTGAA
CTTTTTGACCCCATTCTTTTTTTTTTT--------------TATTTTT--------------------AT---AAAGCCA
CTGGATGTAGACAAAGATTCCTCCCTTGTGACTCTTTGTTATG
>Canis_familiaris
TTTATTAGCT----GTCTTCTGATTTGTT-AAATACCTTT-TGCCTTTCTGATAACTATAA---TATTCTTT-GTTTTTT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------AAAGCCA
CTGGATGTAGACAAAGATTCATCCCTGGTGACTCTTTGTTATG
>Felis_catus
TTTGTTAAAT----ATCTTCTGATTTGTTAAAATACCTTTATACCTTTCTGATAAC--TAA---TGTTCTTT-GTTTCTT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------AAAGCCA
CTGGATGTAGACAAAGATTCATCCCTGGTGACTCTTTGTTATG
>Manis_pentadactyla
TTTATTAAATAGGTATTTTATGATTTGTC-GAGTACTTATATACCTTTCTGATAAC--TAA---AATTTCTT-GTTTTTT
T-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------AAAGCCA
CTGGATGTGGACAAAGATTCATCCCTGGTGACTCTTTGTTATG
>Condylura_cristata
TTTATTGAATAAGTATCTTCTGATTAGTT-AAATGCTTAAGTACCTTTCTAATAAC--------TGATTGTT------TT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------AAAGCCA
TTGGATGTGGACAAAGATTCATCCCTGGTGACTCTTTGCTATG
>Sorex_araneus
TTTA-TAACTAGGCACC-----ATTC----AAATAC----AAACCTTTCTAACAAC--TGT---TGTTGTTT-GCTTTGT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------AAAGCCA
CTTGATGTGGACAAAGATTCATCCCTCGTGACTCTGTGTTATG
>Homo_sapiens
TATATTATTTCGAT---TTATGATTTGTT-AAATACTTACATACCTTTCTGATAAC--TAA---TGTTTTTT-GTTTTTT
T-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------AAAGCCT
GTGGATGTGGACAAAGATTCATCCCTAGTGACTCTCTGTTATG



Pig259_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
-TTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATT
TTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA-------------------------------------------
----------------------------------------
>Sus_scrofa
GACAGATGCAACTGTGGAGATTGGGAGTTAGGGAGTCTGAATTACT--ATTC---AGAGTG----TGCTCAGGGAGAC--
-------------------TCCTTTCACAATGTATATGCATATCAAATCATCATGTTATGGCCTTTAAATATTTTATGAT
TTAATTTGTCAATTATGCTTCCAT-AACCTGAAA--------AGAATGTGCTA-----AAA---GTACAAGGGTTAAGAG
GCACTGGCTTGGTAGTGAAGGAGAAAGA-GGCAAATAAAT
>Bos_taurus
GATGGATTCAACTATGGGGCTG-GCAGTTAGGGAGTCTGAATTAGT--ATC----AAAGTG----TGTCAGGAGAGAA--
-------------------TCCTTGCACAATGCACACATTTCTCATAACACCTTGTTACACACTTTAAATATTTTACAAT
TTTATTTGTCAATTATACCTCAATAAAGCTGAGGGAAA----AAAGTGTGCTA-----GAA---GTGCAATGGGTAAG--
--------------------------------AAAGAGAC
>Equus_caballus
GATGGGTTCAGCTATGGAGATT-GGAGTCAGGGAGGATGAATTAGT--ATTA---AAAGTG----GACAAGAGAAGAA--
-------------------TCTTTGCAGAATATATACATTTATCAAATCATCACATTATACACTTTAAATATCCTACAAT
----TTTGTCAATTAAACCTTGATGAAGCTGGAAAAA-----GAAGTGTGCTAGAAGAGAA---ATACAATGGATAAGAG
GCACTGGCCCACCTGTGGAGGAGAAAGATGAGACAGCAAC
>Ceratotherium_simum
GATGGATTCAACTATGGAGATT-GGAGTTAGAGAGGATGAATTAGT--ATTA---AAAGTG----TGCCAGGGAAGAA--
-------------------TCCTTTCACAATGTATACCTTTATCAAATCTTCACGTTATACACTTTAAATATCTTACAAT
TTTATTTGTCAATTATACCTCGGTAAAGCTGAAAAAAAG---AAAGTGTGCTAGAAGAGAA---CTACAGTGGATAAGTG
GCACTGGCTCAATAGTGGGGGAGAAAGATGAAACAGCAAT
>Myotis_myotis
GGTGGATTCAACTAGGGAGAGC-CCCGTTAGGGAGTCAGGGTTAGT--ATTA---AAAGTG----TGCCAGGAGAGAG--
-------------------TCTTTTCATGATGTATACAATTATCAAATCATCACCAT-TACACTTGAAATATCTTACCAT
TTTATTTGTC-ATTATACTTGGATAAATTTGGGGGCAA----GGAGCATGCCAGA-GAGAA---ATACAATGGGTAAGAG
GCTCTGGCTCAGTAGTGGAGGAGAAAGATGCGAGAGCAAT
>Rousettus_aegyptiacus
GGTGGCTTCATCTAGGGAGATG-GGATATAGGGAGTCTGGGTTAGT--ATTA---AACATG----TGCCAAGGA-GAA--
-------------------TCTTTTCATATCATGTACTGTTATTGAATCAT---GTTATACACTTTATATATCTTACAAT
TTTATTTGTCAATCATACATCAGTAAATTTGGGGGGA-----AAATAGTGTCAGAAGAGAA---GTACAATGGGTGAGAG
GCACTGGCTCCGTAGTGGAGGAGAAATATAAGAGAGCAAT
>Canis_familiaris
GATGGATTCAACTAGGGAGATT-GGAGTTAGGCAGTCTGAATTAGC--ATTG---AAAGTA----TGCTAGAGGAGAA--
--------------------------------------------------------------------------------
----------------------------------------------------------------GTACAATGTACACAAG
GCATTGGCTCAGTAGTGGAGA--AAAGATGAGAGAGCAGG
>Felis_catus
GATGGATTCAACTAGGGATATT-GGAGTTAGGCAGTCTGAACT-GC--ATTG---AAAGTG----TGTCAGAAGAGAG--
--------------------------------------------------------------------------------
----------------------------------------------------------------GTACAATGAGCTGGAA
GCACTGGCTCGGGATTGGAGGAGAAAGATGAGAGAGCAGT
>Manis_pentadactyla
GATGGATTCGTCTAGGGGGATT-GGAGT-AGGGAGTC-------------TA---AAAGTGTGCCTGCCAGAAAAGAA--
--------------------------------------------------------------------------------
----------------------------------------------------------------GCACTGTGGGTAAGAG
GCACTGGAGAAGTAGTGGAGGAAAAAGATAAGGGAGCAAT
>Condylura_cristata
AATGGATTCAACTGGGAAGGCT-AGACTGAGGGACTTTGGATTACTTGATAT---AAAACA----TAGCAGAAGAGAA--
--------------------------------------------------------------------------------
----------------------------------------------------------------GTATAGTGGGTGGGAG
GCACTGACTTAGTAGAGGAAGAGAAAGATCAGAGAGCACT
>Erinaceus_europaeus
GATAGATTCAGAGAGGGAGATC-AAAGTTAAGGAGTTTGACT------AT-----GCAGTG----TCCTGGAAGAGGA--
--------------------------------------------------------------------------------
----------------------------------------------------------------A---GATGGGTAAGAG
GCACTGGTTCAAAACAAAAGATTAAGGCTGTCAAAA-GAT
>Homo_sapiens
GATAGATTTAAATG-GGAGAGT-AGATTTTAGGAGTCCAAATGAGT--ATT----ACAGTG----TGCCAGAAGTGTA--
--------------------------------------------------------------------------------
----------------------------------------------------------------GTATACTGGGTGAGAG
GAACCAACTTAGTAGTGGAGGTGAAAGATGAGAGAGCAAT



Pig270_LINE

>L1MC1_3END
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------TTTTTAAA-----TAGACTTTATT----------TTTTAGAGCAG
TTTTAGGTTCACAGCAAAATTGAGCGGAAGGTACAGAGATTTCCCATATACCCCCTGCCCCC------------------
-------------------------------------------------------------
>Sus_scrofa
GATAGGATGTCAAAAAAATATCACTATGGTTAAGTAATTA----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------TCACAGACCAG---GGGGGTAT-----------CACCC
TTTA---AA---AACATTTGCCTTTTGCTTTATTCATATG---ACACCACAGCATGGA-----CTCTTGCTCAGTAGTTC
TATATCTAGAACTACTAGATCTAGTCCA----TTTTTTAAAAA----ACAGACTTTGTT----------TTTTAGAGCAG
TTTTAGGTTCACAGCAAAACTGAGTAGAAGTTATAGAAATGCCCCAT------------------TGG-GGTAG---TTT
T---AT---AGAGTAACACTTAGAATTAGATTATCCATTCAA-TAGCAAAC-AAAATCATT
>Bos_taurus
AACAGGATGT-GAAAACACATCATTGTGGTTAGGTAATTA----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------TTACAGACTAC---TGGGGTGT-----------CATAT
GTAT---TA---AAATTTTGCAATTTGTTTTATT-ATATGAATAAAGAACAGCAGGAACAGCCCACTCATTTGGTAGGT-
--------------CTACATTTAGCTCA----TATTTTAAAAA----TTAGACTTTATT----------TTTAAAAGCAG
TTTTAGGTTCACAGCAAAATTGAGTGAAAGTTACAGAAATGTCCCAC------------------TGG-GGTATCATTTT
T---AT-----AGAAACACTTATA------TTATCCATTCAA-CAGCAAAC-AAGATTATT
>Myotis_myotis
GACATGACTTGAAAAAAAAGTCAATATAACTAGG-AATTA----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------TTACAGAC-AC---TGAGATAT-----------CTTTT
TGTT---GT-------TTTGACATTTGCTTTATTCATATG---GTAGCATATTATGAACAGTTCTCCAGATCAACCATG-
--------------CTAGAACTAGTTCA----TTTTTCAAAAA-----TAGATTTTATT----------TTTTAGA---G
TTTTAGGTTCACAGCAATAGTGAGCAGAAGTTTTAGAAATTTCCCAT------------------TGG-CATATCATTTT
TTTTCT---AGAGTAGCACTTAGAACTAGATTATCCGTTCAA-CAACAAAT-AAAATTATT
>Rousettus_aegyptiacus
GACAGGATGT-GAACAAATGTCA-----GCTAGGTGACTAC---------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------TACAGACCAC---TGAGGTGTGTGTGTGTGTGTGTGT
GTGT---GTGTGTGTGTGTGTGGTTCGCTTTATTCACGTG---ATAGTACATCATGAACAGACCTCCAGTCCGACAGCT-
--------------CTAGATCCAGTTCACT--TCTTTTAAAGA-------GATTTTCT-----------TTTTAGAGCCG
TTTTAGGTTCACGGCAATATGGAGCGGAAGTTACAGAGTTTTCCCAT------------------TGG-GGTATCATTTC
T---CT---AGAGTAACACTTAGAATTAGATTATCCATTCAA-CAGTAAACAAAAATTATT
>Condylura_cristata
TATAGGCTGT-GAAACCATGTCAACAA-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------TAACAGACGAC---TGGG-TAT-----------CAACA
TTTT-------TAAATTTTGCAAGTTGCT---TTCATATG---ACACTATGTCATGTAGAGTCCTC-AGTTCAGTAGCT-
--------------CTAGACATAGTACC----TTAAAAAAAAAAGTAAGATTTTTTGTT----------TTGAAGAACAG
CTTTAGGTTCACAGCAAAATTGAACAAAAGTTAAAGGAAAATCCCAG------------------GAGCGGTATCATTTT
T---GT---AAAGTAACAATTGGA------TAATTCATTCAC-CAGCAAAG-AAAGCTATT
>Solenodon_paradoxus
GCTAGCATGT-AA-AAAATGTCAGTCTGCTTAGGTAATTA----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------TTATAGACCAC---CAGGGTAT-----------CATAT
TTGT----TATTTAATTCTGCAATTTACTGTATTCCTAGG---ACAGTAAATTGTGAAGCGTCCTCCAGTTGAGTAACT-
--------------CTAGATCTAGCTCATTTGTTTTTTAAAGACTTTTTTTATTTTATTTATTTATTCATTGTAAAGCAG
TTTTAGGTTCACAGCCAAACTGAGCAGAAGTTATAGGAATTTCCCA-------------------TAAGGGTATCATTTT
T---AT---AGAGTAACACTTAGA------TAATCTATTCAA-CAGCAAAC-ATAATTATT
>Canis_familiaris
GATAGGATGG-GGGGAAATGTCAGCACGGTTAGGTGATTA----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------TCACAGCCTGC---TGGGATAT-----------CATTT
TCCT----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------AGAGTAACATCTAGAACTAGGTTATCCATTCAA-CAGCAAAC-AAAATTGGT
>Felis_catus
GACAGGATGG-GGGGAAAAGTCAGTATGGTTGGGTGATTA----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------TTACAGACTAC---TGGGGTAT-----------CATTT
TTCT----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------AGAGTAACATCTGGAATTAGGTTATCCATTCAA-CAGCAAAC-AAAATTGTT
>Manis_pentadactyla
GACAGGATGG-GGGAAAATGTCAATATGGTTAGGTAATTA----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------TTACAGACCAC---TGGGGTAT-----------CATTT
TTCT----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------AGAGTAACATTTAGAATTAGGTTATTCATTCAA-CAACAAAC-AAAATTATT
>Equus_caballus
GATAGGATGG-GAGAAGACGACAGTATGGTTAGGTAATTA----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------TCACAGACCAC---TGCGGTAT-----------CATTT
TTAT----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------AGACTAACATCTAGAATTAGGTTATCCATTCAACCAGCAAA------TTATT
>Ceratotherium_simum
GATAGGATGG-GGGAAGATGTCAATATGGCCAGGTAATTA----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------TTACAGACCAC---TGCGGTAT-----------CATTT
TTAT----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------AGAGTAACATCTAGAATTAGGTTATCCATTCAA-CAGCAAAG-AAAATTATT
>Homo_sapiens
GATCAGAGAG-AACAAAATGTCAGTATGATTCGGTAATTCTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCA
TTCTTGTTGCCCAGGCTGGAGTGCAATGGCACAGTCTCGGCTCACTGCAACCTCCACTTCCCGGGTTCAAGCGATTCTCC
TGCCTCAGCCTCCCAAGTAGCTGAGATTACAGGCTTGCGCCATCACGCGTGGCTACTTTTGTATTTTTAGTGGAGACAGG
GTTTCTCCATGTTGGTCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCTGCCTGCCTTGGCCTCCCAAAGCACTGGGA
TTACAGGTGTGAGCCATCACACCCGGCCTGATTCGGTAATTCTTACAGCCCAC---AGGGGCAT-----------CATCG
TTAT----------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------AGAATAACACTGAGAATGGGACTCTCCATTCAA-CCGCAAAC-AAAACTATC



Pig272_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
----AAGAGAGTAGATCTTAAGTGTTCTCACCACACACAAAAAAA-----------------------TGGTAACTATGT
GAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATC----AAAACATCACGTTG
TACACCTTAAATATATACAATTTTTATTTGTCAAT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------TATACCTCAATAAA-
GCTGGAAAAA----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----
>Sus_scrofa
CATCTGACGTGGCAAGACAGAATATAGTTGGTGATACCTCAAC-----TTGAGTTT---AAGAAA------GGGACTAAA
T-------------------AGAATTCTTATCACAAGGAAAAGAAAACTTTATCTATTTATTTATTTATTGTATCTGTAT
GAGATGTGGG--AGGTTAACTAAACTTATTATGGTAATCATTTCAGAA--TATATGGAAGTC----AAATCATTATGCTG
TGCACCTTAAACTTATTCAG-TGCTGTATGTCACT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------TATATCTCATTAAA-
ACTGGGGGGA----AAGAATGGAATAAAGT---AAATGAGAAG----------------------TAGTAAAAC------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------ATAACAATTAAGCATGTTTGATATAGT-GCCA
AGCC
>Bos_taurus
CTTCTGATGTGGCATGACAGGATATAGTTAGTAATGCCTCAAC---ATCCCAATTT---AAGACT------AGAACTAAA
C-------------------AGAGTTCTTATCACAGGGATAAAATTATTTTG-----TTTTTATTTCTTTGTATCTATAT
GAAATGATGA--ATGTTAACCAAATTTATTATGGCAAGCATTTCACAA--TATATGGAAGTC----TAGTCATTA-----
--CACCTTAAACGTATACAG-AGCCATATGTCACTTGCTACTGCTAAGTCGCTTCAGTCTTGTCTGACTCTGTGTGACCC
CATAGACGGCAGCCCACCAGGCTCCCCTGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTTT
CCAATGCATGAAAGTGAAAAGTGAAAGTGAAGTCGCTCAGTCGTGCCCGGCTCTTAGCGACCCCATGGACTGCAGCCTAC
CAGGCTCCTCCGTCCATGGGATTTTCCAGGCAAGAGTACTGGGGTGGGGTGCCATTGCCTTCTCCTACATCTCATTAAA-
ATTGGGGGAAA---AAGAATGAAAGAAAAT---AAATGATAAA----------------------CAGTATAACATACTG
ATGAAGACTATTTGATTTACGGGACTTCCTTGGTACAGTAGATAAAAATCCATCTGCCAGTGCAGGGGACACAGGTTCAA
TCCCTAGTCCGGGAAGATTCTACATGATGAAAAGCAATGAATTCTATGCTCCACAGCTACTGACCCCTTGCTCTAAAACC
CATGAGCCACAACTACTGAAACCCTTGTGCTGCAGCTACTGAAGCCCATGTGCCTCGAGCCCATGCTCCCCAACAAGAGA
ATCCACCGCAATGAGAAGCCTGTGCACTGCAACAAAGAGTAGCTCCCCCTCGCTGCAACTAGAGAAAGCCTGCACACAGC
AGTAGAGACCCAGCACAACCAAAAATTAGTTAATTAATTAAAAGAAAAGTAGTGTTTAAAAAAAATTGATTTAGT-GCCA
AAAT
>Equus_caballus
CCTCTGACATGGCAACACTGGGTATAGTTAGTGACAACTCAAC---TTCCCAACTT---AAGAAT------GGAACTAAA
T-------------------AGAGTTCTTATCACAAGGAAAAAAC-CTTTTTTTTTCTTTTTCTTTTTTTGTAG-TATAT
GAGATGATGG--ATATTAACTAAACTTACTGTGATAATCATTTCATAA--TATATGTAAGTC----AAATCATTATGCTG
GACACCTTAAACTTATACAG-TGCTGTATGTCAAT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------CATAGCTCAATAAC-
ACTAGAAATA----AAAAGTGGAATTAAAT---AAATGAGAAG----------------------TGGTATAAC------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------ATAGTGATTAAGAACTTTTGATTTAGT-GCCA
CACT
>Ceratotherium_simum
GCTCTGACGTGGCAAGACAGGGTATAGTTAGTGATA---CAAC---TTCCCAGCTT---AAGAAT------GGAACTAAA
T-------------------AGAGTTCTCGTCACAAAGAAAAAAA-ACATTT-----TTTCTTTTTTTTTGTAT-TATAT
GAGATGATGG--ATGTTAACTAAATTTATTGTGATAATCACTTCACAT--TATAGGTAAGTC----AAATCATTATGCTG
GACACCTTAAACTTACACAG-TGCTCTATGTCAAT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------TATATCTCAGTAAA-
ACTGGAAATA----AAAAGTAGAACTAAAT---AAATGAGAAG----------------------TAGTATAAC------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------ATAGTGCTTAAGAACTTTTGGTTTAGT-GCCC
AACT
>Myotis_myotis
CCTCGGGCATTGCCAGGCAGGGTAGTGT---TGATGCCTCAAA---TTCCCATTTT---AATAAT------AGAACTAAA
T-------------------AGAGTTCTCATCACAAGGAAAAAAATACATT------TTTTTTTCTTTTTCTAACGGTAT
GAGATGATGG--ATGTTAAGTAAATTTGTTGTAGTAATTATTTCACAA--CATTTTTAAGTCAAATAAATCATTATGCTC
TATACCTTAAACTTACACAG-TGCTGTATGTC------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------TCAATAAA-
ACTGAA--------AAAAAAGGAATTAAAT---AACTGC-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------ATAGTGGTTACAAAATTTTGATTTGGT-GTCA
AACT
>Rousettus_aegyptiacus
CCTGTGACATGGAAAGAT--GGTATAGTTATTGATACCTCAAA---TTCCCAATTT---AAGAAT------GGAGCT---
--------------------AGAGTTCTCATCACAAGGAAA-----ATTTTT-----TTCTTTTTTTTTGGTATCTATAC
AAGATGATGG--ATGTTAAATTAATTTGTTG---TAATTATTTTACAA--CAAACGTAAGTC----AAATTATTATGCTA
TACATCTTAA------ATAG-TGCTGTATGTCACT---------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------TATA--TCAATAAAC
AAGGGGAAAA----AAGAATAGAATTAAGT---AAATGAGAAA----------------------TAATATAAC------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------ATAGTGGTTAAGGACATCTGAGTTAGC-GCCA
AACT
>Mustela_putorius_furo
CTCCTGACGTGGCAAGAC-------AGTAAGCGTTGCCTGTAC---TTCGCAGTTT---AAGGGT------GAAACTAAA
T-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------AAATGAGAGG----------------------CAGTATAAC------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------AAACACAATGGTTAAGAACA-TTGATTCAGT-GCCA
AACT
>Felis_catus
CCTTTGACATGGCAAAAACAGGTAGAGTTAGTGTTACCTCTGC---TTCCCAATTT---GGAACCAATTATGTAACCAAG
G-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------AAATGAGAGGCCAGATGTCAAGTGCACTAACATAGTATAAC------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------AAACATAGTGGCTAAGAACA-TTGATTTAGT-GCCA
AACT
>Manis_javanica
CCTCTGACATGGCAAGACAGGGTAGTGATACCATCACCCT-----------AGTTT---AGGACTG------GAACTAAA
T-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------AAATGAGAAA----------------------TAGTATAAC------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------AAACATAGTCACTAAGAACATTTGATTTAGT-ACCC
AACT
>Condylura_cristata
CCTCTGACATGGCAAGACTGTCTATAGTTAGTGATATCTTAAT---TTCCCAATTT---AAGAAT------GGAACTAAA
C-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------AAATGAAAAG----------------------TTGT-TAAT------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------ATGATCGCTAAGAATATTTGACTTAAT-ATCA
AACT
>Sorex_araneus
CCTCTGATAT-GCAAAGTGGGGTACAGTTAATGATTCCTTTACACTCTCCCAACTT---TAA-ATGAGAGT-TATTTCTA
T-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------AGATAAGAAA----------------------GGATATAGC------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------ATGATGTTTAAGAATTTTTATGTCTAT--CCA
-GCT
>Homo_sapiens
CCTCTGCCATGGCAAGACAAAGTATAGTTAGTGGTACACCAAC---TTCCCAATTT---AATAAT------GAAACTAGT
T-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------AAATGGGAAG----------------------TGGTATAAA------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------ATAGTGATTAAGAGCCTTTGATTTTACAGCCA
AACT



Pig275_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
-----TTGATTGTGGTAATCATTTCACAATGTATAC--GTATATCAAAAC-------------ATCACGTTGTACACCTT
AAAT-ATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA----------------------------
-------------------------------------------------
>Sus_scrofa
TTAT---TTCTTATGATATTACTCTTCCTCC-ATTATACAACCATCCAAGCAACAC-----TTTTAAAA-----ACTACT
CT---------------CTCATTTCACAGTATATACATATATACCAAATA-------------ATTGTGCTGTACACCTA
AAAC-TGGTACAG-CATTATATGCCAATTCTATCCCAAT----------------TTTTAAAAATCACTCT---AGTATT
--GCAATAAATGTCAATTTTAAATCCTGTATTATTTAGG-----GGCCT
>Bos_taurus
TTATCATTTTACATAATATTATCCTTCCT---GTTATATAACCACCCAAGCAACAC-----TTTTAAAA-----ATAACT
CT---------------ATCATTACACAGTATATAC--ATTAATCAAATA-------------ATCATATTAT-----TA
AAAC-AAATACAT-TGGTATATGTCAATTATACCTCAGT----------------TTTTAAAAATTACTCT---ATTGTT
CCATATAAATT-TCAATTTAGAATCCATTATTACCTTGA-----GGCCT
>Equus_caballus
TTATCATTTCCTATAA----GTTCTTCCTTT-ATT-TACAACTACCTAAGCAAC--A----ATTTAAAA-----GTCACT
TT---------------ATCATTTCACAGTATATAC--ATATATCAAATC-------------ATTATGCTGTACACCTA
AAAC-CAATA----CGTTATATGTCAATTACATCTCAA-----------------TAAAAAAAGTCACTTT---AGTGTT
CTGTATGAATTTTCAATTTTAAATCCTTTATTATTTGGG-----GGCCT
>Ceratotherium_simum
TTATTGCTTCATATAA---TATTCTTCCTCT-ATTATACAACCATCCAAGCAGCAT-----TTTTAAAA-----ATCACG
TT---------------ATCATTTCACAGTATATAC--ATATATCAAATC-------------ATTATGTTGTACACCTA
AAAC-TAATACAA-CGTTATATGACAATTACATCTCAA-----------------TAAAAATAATCACTTT---AGTGTT
CTGTATGAATTTTCAACTTTAAATCTTTTATCATTTGGG-----GGCCT
>Myotis_myotis
TTATAAGTTTATA-AGTATTATTCATCTTCG-ATTTTACAACCA----AGCAACATA----TTTTAAAA-----ATCACA
TT---------------ATAATTTCTCAGTATGTAC--ATATATCAGGTC-------------ATTGTGTTATACACCTA
AAACTTAATCCAA-TGT--TATGTTAATTATATCTCCA-----------------CTTAAAAAATCACTTT---AGTGTT
CTGTATGAATTTTCCATTTTAAATTCTTTCTTATTTGGG-----AGCTT
>Rousettus_aegyptiacus
TTATCGCTTCATATAA--TTATTCTTCCTCT-ATTATATAACCATTCAAGCAACA------TTTT---------------
-----------------ATCATTTCTCAGTATATACATATATATCATATAAATGATATATCAAATCATTGTATACACCTA
AAAC-TGATA----CGTTATATGTTCATTACATCTTAA-----------------TTTTAAAAATCACGTT---AGTGTT
CTTTATGAATTTCTGGTTTTAAATTCTTTCTTATTTGGA-----GGCTT
>Canis_familiaris
TTATCCCTTCATATAATATTATTCTTTCTCT-ATCATACAATCATTTGAGCAATGT-----TTTAAAAA-----ATTACT
TC------------------------------------------------------------------------------
--------------------------------------------------------------------------AGTGTT
C--TATGAATTTTTAGTTTTAAATCCTTTCTTATTTGGG-----GCCCT
>Felis_catus
TTGTCACTTCGTATAATATTATTCTTTCTCT-GTTATATAACCATTCAAGCAAGTAAT---TTTTAAAA-----ATTACT
TT------------------------------------------------------------------------------
--------------------------------------------------------------------------AGTCCT
C--TATGAATTGTCAGTTTTAAATCCTTTATTATTTGGG-----GCCCT
>Manis_javanica
TTATCACTTCATGTAATATT----TTTGTCT-ATTATACAACCATTCAACCCATG------TTTTAAAAAAAAAATCACT
TG------------------------------------------------------------------------------
--------------------------------------------------------------------------AGTGCT
CTGTG-GACTTTTCAATTTTCAGTCCTTTATTGTTTGAG-----GGACT
>Condylura_cristata
TTATCTTGATATGTAATATTATTCTTCCTTT-ATTATAAAACCATCCAAACAAGA------TTTTAAAA-----TACCCT
TT------------------------------------------------------------------------------
--------------------------------------------------------------------------AGTGTT
CTATATGAATTTTCAATTTTAAATCCTCGGTTACTTGGG-----GACCT
>Sorex_araneus
TTATTACTGTCTACAATATTATCTTTTTC---ACCCTTTCACAATATCAATAATAT-----ATTTAAAA-----TTTAAT
CT------------------------------------------------------------------------------
--------------------------------------------------------------------------AATGTT
CTTTGTAAAATAGCTATTTTAAATCTGTCATTATTTGGGCAGGAAACCT
>Homo_sapiens
TTATCACTTGATGTAATAGCATTATTCCTCTGATTATATCACCAACTGAACAGCA------CTTCAAAA-----ATTACT
AT------------------------------------------------------------------------------
--------------------------------------------------------------------------AGTGCT
CTGTATATATCTTTAATTTTAAATCCTTTATTATTTGGG-----GGCCT



Pig297_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
---------------------------------------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATT
GTATATATTTAAGGTGTACAACG-TGATGTTTT-GATATACGTATACATTGTGAAATGATTACCACAATCAAGC----TA
ATTAACATATCCATCACCTCAC----ATAGTTACCAT-TTTTTTGTGTGTGGT----------GAGAACACTT-------
---AAGATC-TACTCTCTTAGCAAATTTCAAGTATACA---------------------ATACAGTATTAT---------
----TAACTATAGTCACCATGCTGTACATTAGATCTCCAGAACTTATTCATCCTGCATAACTGAAACTTTGTACCCTTTG
ACCAACATCTCCCCATTTCCCCCACCCCCCAGC-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------
>Sus_scrofa
GAAGATGCTG--GGAGGTCTTCCCAAAGGTTTGGTAAAGCAATGAAGGTGA----CTT---TGCCTGGGCCACCATTTTT
--------------------------TGGTTGAGTATTTTATTA--TTTTTTATTGAGACATAACTGGCACACAACA---
----TTGCTTAAGGTATAAAATG-TGTTGATTT-TATTCATTTATATACTGAAATAAGCTAACCAACAA--ACCCTTATA
GCAAATACCTCTGTCATCTCAC----ATAATTACCATTTATTTTTCTTGTGGT----------GAGATCATTT-------
---AAAGTC-TAGTCTCTTAGCAGCTTTGGAGTATATA---------------------ATACTGTACTGT---------
----TGACTATAATCACTATTCTGTGCTTTAGAGATCTATAACTTGTTCATCTT--CTAATTGCAAGTTTGCCCCTTTTC
TCCAGCAACTCTCTCCAACTCTTTTTTTTTTTTTTCCTTTTTTTTTAGGGCTGTACCTTTGGCATATGGAAGTCCCTGGC
TAGGGGTTGAATTGGAGCTGCAGCTGCTGGCCTACACCACAACCACAGCAATGCCAAATCTGAGCCGTGTCTGTGACCTA
CACCACAGCTTAGATCCTTAACCCATTGAGCAAAGCCAGGGGTTGAACCTGTATCCTCATGGATGCCAGTCGGGCTTGAA
ACCACTGAGTCACAATGGGAACT---TCCCCCAGTTCCAATTCT---TCATTGCAGATCTTCAA----GGACAA------
---------------GAGAAGAAAACAAGGGTAGGGAGTAATATTAGGGTC---TACAAA
>Bos_taurus
GT-GTTGGTG--AAGGGTCTTTCCAAAGGTTAGGTAAGGCAATGAAGATAG----CTT---TGCCTAAGTCACAGTTTTG
---TTTTGTTTTGTTTTTTTGGGGGGTGACTGTGTATTTTATTA--TTTTTTATTGAGATATAATTGGCACGTAACA---
----TTGTTTAGGGTGTACAGTG-TATTGATTT-GATACATTTATTTATCACAAGAAGCTTACCACCAT--AGTCCTACA
GCTGACACCTTTATCACCTCAC----ATAGTTATCAT-TTCGTTTTTTGTGGT----------GAGATCATTT-------
---AAAGTCTTAAACTCTTGGCAGCTTTGATGTATACA---------------------GCACAGTGCTGT---------
----CGACTGTGAGAACCATGCTGT-CTCCAGAGCTCCAGAATGTACTCATCTT--CTAATTGCAAGTCTGTACCCTTTC
TCCAGCATC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------TCCCTAATTCCATTTCT---TCATCACAGATCTCCAA----GGACAA------
---------------GAGAAGAAAACAGGGGTTGGGAGTAATATTAGAATT---TACAAA
>Equus_caballus
GAAGATGGTG--GAGGGTCTTTCCAAAAGTCTGGTGAAACATTGAAGATAA----CTT---TGCCTAAGTTGTAATTCTT
--------------------------------TTTTTTGATTATTTTATTTTTTTGAGATGTAATTGATATATAA-----
------ATTTAAGGTGTACCATA-TGTTGATTTATATACATTTATATATTGCAATATGCTTATCACCAT--AGCTT--TA
GCTAACAC-TGTATCACATCAC----ATAATTA-----TTTCTTTTTTATGGT----------GAGAACACTT-------
---AGGGTC-TAGTCTGTTAGCAACTTTTAAGTAAATA---------------------ATATAAGACTGT---------
----TGACTATAATGACTATGCTGCACATTAGATCTCCAGAACTTATTCATCTT--CTAATTGCAAGTTTGCACCCTTTG
ACCAACATC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------TCCCTAGTTCCCAATTCT---TCATTGCAGATCTCTAA----GGACAA------
---------------GAGAAGAAAACAGGGATTGGAAGTACTATTAGGATC---TACAAA
>Ceratotherium_simum
GAAGATGGTG--GAGGGTCTTTCCAAAGGTCTGGTAGAACAGTGAAGATAA----CTT---TGCCTAAGTTGCAATTCTT
------------------TTTTTGTTTGGTTGCTTATTTTATTATTTTTTTTATTGAGATGTAATTGATATATGA-----
------GTTTAAGGTGTACAATA-TGTTGATTTATAAACATTTATATGTTGTGACATGCTTACCACCAT--AGCCT--TA
GCTAACACCTCCATCACTTCAC----ATAATTA-----TTTCTTTTTTATGGT----------AAGAACATTT-------
---AAGGTC--------TTAGCAACTTTGAATCATATA---------------------ACAC-GTGCTGT---------
----TGACTATAATCACTATGCTATGCATTAGATCTCCAGAATTTATTCATCTT--CTAATTGCAAGTTTGTACTCTTTG
ACCAACATC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------TCCCCAATTCCCAATCCT---TCATTGCAGATCCCTAA----GGACAA------
---------------GAGAAGGAAACATGGGTTGGAAGTACTATTAGGATC---TACAAA
>Condylura_cristata
GAAGGTGGGG--GAGGATCTTTCCAAAGATTTAAAGGAACATTGAAGAAGATCACTTT---TACCTAAGTCAAAATGCTT
-------------------------------------TGTTGTTATTACTGTATTGGGATCTAACTGACAAATAACA-TG
GTGTAAGTTTTAGTTGTACACTG-TGTCCATT--GCTGCATTTATATATCCCAATTTGTTT-CCACCAG------TCACA
GCTAACACTTCTGCCCCATCAC-GTCACATGTG-----CTTTTTTTTTATACT----------------ATTTTTTTTAC
TAAAAAGTT-TATTTTTACATCATTTTGCAAATGCCCACATGTGCTTTTTTTATGATCTACATAATCATCTATACGTAGT
CAAGTGACTATCATCACTATGCTATGTATGAGATC--------GTATCTATCTT--CTAATGGGGAGTTTGTATCCTTTG
ACCAACATC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------TTCCTAATTCTCAATGCT---TTACTACAGATATCCAA----GGACAA------
---------------AAGAAGAAAAGAGTAGTAGGGAGTAACATTAGAATCTGTTATACA
>Erinaceus_europaeus
GAAAATGGT---GAAAGTCATCCCAAAGATTTGGTAAAATATTAGAGATAA----TTA-------TAAGTCATAGTTCTT
----------------------------TTTTTTTATTCGATTA--CTTTTTATTGAGATGTCATTGACATATAACA-TC
ATGTAAGTTTAATGTTTGCAGCACTGTTGATTT-GCTGCATTTGTATTTTTCGATAGGCTTATTGCGT---AGTC---TG
AGCAAGACCTTT-TCACTGCACTAATATAATTA-----TTTATATTCTGTGGCAAAAAACACAAAAAACAATT-------
---AAGGTC-TAGTTTCCAGTTAGCTTTCAAATACATA---------------------GTGCAGCACTAT---------
----TGACTAT----ATTGTGTTGTGCATTCAGTCTTCAGAATTTATCTGTCCT--CTCATTGTAAATGTGTAC-TTTCC
ATGAACATC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------TCCATAATTTTCAATTCT---TTATTG-AAAGCTCCAA----GGAGAA------
---------------GATAATTGAAGAGGGTAGGGAA--AATATTAGTGTT---CACCGA
>Canis_familiaris
GAAGACGGCA--AAGGGTCTTTCCAAATGTTTGGTAGAATATTGAGAATAA----CTT---TGCCTAAGTCACAATTCTT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------ACACTGCAGATATCCAATCTGAGATAA------
---------------GAAAAGGAAACGTGGGTAGGG-------------CC---TATAAA
>Felis_catus
GTAGATGGTA--GAGGGTCTTTCCAAACATTTGGTAGAGCACTGAGAACAA----CTT---TGTCTAAGTCACAATTCTT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------ACATTGCAGATACCCAA----GGATAAGGTGGG
GGGGGGGGATGGAGGGGTGGGAAGACACGGGTAGGAAGTAAT-TTAGGGCC---TACAAA
>Manis_pentadactyla
GAAGCTGGTGGAGAGAGTCTTTTCAACAGTTTAGTAGAGCATTGATGATAA----TTT---TGCTTAAGCTACTATTATT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------ATATTGCAGATCTACAA----GGATAA------
---------------AAGAAGAAAATAGGGGTAGGGAATAATATTAGAGTA---TACAAA
>Myotis_myotis
GAAGATGGTG--GAGGGTCTTTCCAAAGGTTTGGTAGAGCATTGAAGATAA----CT-----GCCTAAGTCACAGTTCTT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------ATATTGCAGAACGCTGA----GGATAA------
---------------GAGAAGAAACCAGGGGGAGGGAATAATATCCG--TC---TACAAA
>Rousettus_aegyptiacus
GAAGATGGTA--TTGGGTCTCTCCAAAGGTTGGGTAGAGCATTAAAGATAA----CAT---TGCCTAGTTCACGATTCTT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------ACCTTGCTGATCTCCAA----GAATAA------
---------------GAGAAGAAAACAGGGCTAAGGAGTAATAT--GTGTC---TACAAA
>Homo_sapiens
AAAGATGG----GAAAATCTTTCCAAAGGTATGGTAGAGTATGAAAGATAA----CTT---TGCCTGGGTCACAATTC-T
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------GTCT-GCAGATCTCCAA----GGGCAA------
---------------CAGAAGAAAACAGGAATAGGG-GTAATATTAGTGTC---TATACA



Pig355_LINE

>L1MA9_3END
----------------------------------------------------------------------------GAGT
AGATCTTAAG--------------TGTTCTCACCAC---ACACAAAAAAA--------------TGGTAACTATGTGAG-
GTGATGGA--TATGTTAATTAGCTTGATTGTGGTA--------ATCATTTCACAATGTATA------CGTATA-------
TCAAAACAT---------CACGTTGTA------CACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAA
GCTGGA------AAAA----------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------
>Sus_scrofa
CGAATTGTCCACCCACCTGCTTTGTAGTGA-TCTCAACTCTACAGAGACACTT---GGACAATTTTAAAGGAA-------
----CATAAA--------------TGTTCTTGCCAA---AAAAAAAAAAAAAAAAAGAAAAAAGTGATAAGTATGTGAA-
GTGATGGA--TGTGTTAATTAACTAGATGGTGTGG----GAAGATCCTTTCACAAT------------ATGTA-------
TCAAATTAC---------TACTTTATG------CACTTTAAATGTCTTACAGTTTCATTTGTCAGTTATACCTGAGTAAA
ACTGAAATTAGAATAATGAAAGCAAAAAACTAAG---GGCAAACATCATAGAAG--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------GA---GTGTTAATTTTAACCACTGAGGCAAAGTACA
TTTTCTCAGGCAGCATCATGTTCGTT
>Bos_taurus
TGAAGTCTATATCCATCTGCTTTTCACTGA-CCTCAGCTCTGCAGAGACAATT---AGGCATTTGTAAAGGAA-------
----CTTAAA--------------TGTTCTTACCAA---AAAAAAAAAAAGA-----------------------TGAA-
GTGATGAATGTGTGTTAAGTAACTAGATGGGGAGG------AAATCCTTTCACAGT------------ATATA-------
TCAAGTTAC---------CACCATGTA------TACTTTAAGTATCTTACAATTTTATTTATCAGTTATACCTCAGTAAA
ACTGAAATTTAAAAAA--GAAACAAAAGACT-AT---GGGAAAAATAATAAAAGTAGTGTCAGTTTTTTTTAAGGGCTTC
CCTGGTGGCTCAGATGGTAAAGAATCTGCCTCCTATATACAGGAGACCTGAGTTTGATCCCTGGGTTGGGAAGATTCTGG
AGAAGGAAATGGCAACCCACTCCAGTATTCTTTCCATGGAGAGAGGAGCCTCTCAGGGGGCTACAGTCCATGGGGTCCCA
AAGAGTTGGACACAACTGAGCTATGGATCATATCGTGAAATCGTGA---GTGTCCATTTTAACTAGTGAGGAAAAGCATT
TCCTTTTTGGAAATGCTGCTTTCCTT
>Equus_caballus
TGAAGTCTCCATCCAGCTGCTCTTCGGTGG-CCTCAACTCTGCAGAGTTC---------CATTTTTAAAGGAA-------
----GTTAAA--------------TGTTTTCACCCA---AAATAAA-------------------------TAAGTAAA-
GTGATGGA--AGTGTTAATTAACTAGATTGGGAGAGAGTGGGAATTCTTTCACAATGTATA------AGTATA-------
GCACATCAC---------CACAAAGTA------CGCTTTAAATATCTTACAATTTTATTTGTCAATTATACCTCAGT-AA
GTTGAAAT----AAAA--GAAACAGAGAATTAAG---GGGAAAAATAGTAAAGG--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------AA---GTGTTAATTTCAGCCAGTGAAGCAAAGCACA
GTTTTTCGGGGAATGTTACATCTTTT
>Tapirus_indicus
CAAAGTCTCCATCCGGCTGCTCTGCAGCAG-CCTCAATTCTGCAGAGACTGTT---GGGCATTTCTAAAGGAA-------
----GTTAAA--------------TGTTTTCACCCA---AAATAAATAAG-----------------TAGGTAAGTAAA-
GTGATAGA--TGTGTTAGTTAACTAGATGGGGGGC-----GGGATTCTTTCACAATGTATA------AATATA-------
TCAAATCAC---------CACGATGTA------CACTTTAAATATCTTACAATTTTG----TCAGTTATACCTCAAAAAA
GCTGAAAT----AAAA--GAAACAAAGAATTAAG---GGGAAAAATAATAAAGG--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------AA---GTGTTCATTTTAGTTAGTGAGGCAAAGCACA
CTTTTCCAGGCAATGTTGCGTCTCTT
>Myotis_myotis
TGAAGTCTTCATCCAACTGTTTTGCAGTGG-ACTCAACTCTTCAGAGACTGTT---GGGAATTTTTAAAGAAA-------
----CTTAAG--------------TGTTCTAA---A---AGATAAA-------------------------TATGTGAAG
GTGATGGA--TATATTAATTAATAATATGTGGGGG------TGATCCTTTTACAATGTATA-------ACATA-------
GCAAATAAC---------CATGATGTA------CACTTCAAATATCTTACAATTCTATTTGTTAATTATACCTCAATAAA
ACTGGGG-----AAAA--AGCCCAAAGAACT------GGAAAAGAT----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------AA---GTGTTAATTTTAGCCAGTGAGGCAAAGAACA
CTTCTTCAAGTAATGTTGCATCCCTT
>Rousettus_aegyptiacus
TCAAGTCTCCATTCAGCTGCTTTGCAGCAG-CCTCAGCTCTTCAGAGACT-------GGTGTTTTTAAAAGAG-------
----CTTGAA--------------TGTTTTCACACACACACACAAAAAAG------------------------------
ATGACGAA--TGTGTTAATTAACTATATGGGGAGG-------GATCCTTTCACTATATGTGTGTG--TGTGTG-------
TGTAATCAC---------CACAATGTA------CACTTCAGGTATCTTCCAATTTTATTTGTCAATTATACTTCAATAAA
GCTGAAAAAAAAAAAA---ACCTAAAGAACTAAG---GGGAAAAATAATTTTTTAA------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------AA---ATGTTAGCTTTAGCCAGTGATGTATAGCATA
CTTTTCCAGGTGACATCGCATTCCTT
>Condylura_cristata
TGAAGTCTCCTTCCCGCTGATCTGCAGGGA-CCTCAGTTCTGCAGAAACTGTT---GGGCATTTGTGAAGGAA-------
----CTTAAACAAAATCTTGTTGTTGTTTTTTTTTTTTTAAGTAAA-----------------------------TGGG-
GTGATGGA--TGTGTCGGTAAGCTACATGGGTGGG-----GGCATCCTTTTCCAGTGCACTCCAAATTATATACTCTATG
TCAAGTTAC---------CAC-ATGTG------CAGCTTAAAGATCTGACACATTTAGCCACCAGTTAGACTTTAGTGAA
GCTGACATTAACAAGA---AGAAAAAACTTCAAG---GGGAAAAATAATAAAAG--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------AT---GTGTTGATCTTAGCCAGTGAGGCAAAGCA--
GTTTTCCAGGTTAGACTGCCTCCCTA
>Uropsilus_gracilis
TG--GTCTCCATCTTGCTGATCTGAAGGAACCCCCAACTCTGCAGAAACTGAT---AGGCATTTGAGCAGGAA-------
----TTTAAA--TCTTGTTTTCTTTTTTTTTTTTTA---AGGTAAA-------------------------TGAATGGG-
GTGATGAA--TATGATAATCAACTAGATGGGGGGT---TGTAAATCCTTTCACAATGCATTCCAGATTATGTA-------
TCTATATATACATGTGCACACATTATATAAAATTACTTTAACTAGCTCATAAATTTG----TCATTTATACCTTAGCAAA
GGTGACATTAAAAAAA-AAAAGAGAAAAACTAAG---GGGGAAATATAATAATA--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------AAATAA---GTGTTCATTCTAGCCAATGAGGCAAAGCACA
GTTTTTCAGATTTTACTCTCTCCCTT
>Canis_familiaris
TGAAATCTCCATCTAGCTGCTCTGCAGCGA------------------CTCTT---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------GGGAA--TTTTTAAAGA--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------AA---ATGGTAATTTTAGCCAG--------------
-----------------GCATCTTTT
>Ailuropoda_melanoleuca
TGAAGTCTCCCTCCCGCTGCTCTGCAACTG-GCTCCTCTC-GCAGAGACTCTG---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------GGGCA--TTTTTGAAGC--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------AA---ATGGTACTTTTAGCCGGTGAGGCAAAACACG
CTTTTTCAGGCAACATTGCATCTCTT
>Manis_javanica
TGAAGTCTCCATCCAGCTGCTCTACAGTGC-CTTCAACTCTGCAGACACTGTT---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------TGGCA--TCTTTAAAGA--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------AA---GTGTTCATTTTAGCCAGTGAGG--------A
CTCCTAAAGGCAGCATCGCATCCCGT
>Homo_sapiens
TGAAGTCTTTATCCTGCTGCTTTGTAGCAG-CCTCAACTCTGCAGACACTTTT---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------GGACA--TTTTTAAAGG--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------AA---ATGTTCATTTTAACCATTTAGGCAAGGCATA
CTTTTGAAAGCAACATTGTATCCCAT



Pig373_LINE

>L1MA9_3end
---------------------------------------------------------------------AGCATGGTGAC
TATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGA-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------GTAGATCTTAAG-TGTTC-TCACCACACACAAAAAAATGGTAACTATGTGAGGTGATGGATAT
GTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATAT-ATA
CAATTTTTATTTGTCAATTATACCTCA---ATAAAGCTGGAAAAA-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------------
>Sus_scrofa
AAAATCTGCATGTCACAATATATATCGACCCTTCCTCGCT--TTACTGAGTT---AAATCTTATAA--------------
-ATGGTCAATAACGCTGTATTATATCCTT--------CTAAGAGA-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------CTGGATCCTAAG-TGTTC-TTACCACACACACAAAA--GAAAAGTATGTGGCATGACAGACCT
ATTAGCCAAGGCTATGACGGTAGTCATGTTGCAACATGTAATTGTATCGAATAAGCAT-TTAGACACCTTCAACTT-ACA
CAATGTTATGTGTCAATTATATTTCAGGTTTTAAAA------------ACATCTCATAATTG---AA-----TCTTAGAT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------TGATATTTTTC--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------CATCGCTGTTAGGTTGGAATGTCAGCATTTCACA-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------TCATCCCTGTTTGATTTTC
>Bos_taurus
AAAACCTGTATTCCACCATGTATATTGACCCTTCTTAACT--TTACGCAGTT---AAAACTGAAAA--------------
-TTGGTCAATAAAACTGTATTAAATACTTCAAAAGTACAAAGAGGGACTCCCCTGGCAGTCCAGTGGTTAAGACTCCACA
CTTCCAGTGTGAGGGCTGCAGGTTCAACCCCTAGTCGAGGAATTAAGATCCCACATGCTGCACAGAGCGGCCAAAGAACA
AAAATTTAAAAAGTGCTGAGATA---------------------------------------------------------
-----------------CTAGATCTGAAA-TGTTTGTCATCACATACAAAGAA--GATAAGTATGTGACGTGACAGAGAT
ATTAGTTCAGGCTGTGATGGTAATCACATTACAACATATAAATGTATCAAATCAGCACGCTGTACACCTTAAACTT-ATA
CAGTGTTATATGTCAGTGATAGCTCAA---TTAAA-------------AAATCTCATAATTG---AA-------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------TTTTTT--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------CATAGCTATTAAATTGTAATATCAGCATTTTACA-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------CAATCTCTATT--ATTTTC
>Equus_caballus
AAAACCCATATGTCACAATATATATTCACTCTCCCTGACT--TTACTCAATT---AAATCTTATAA--------------
-TTGGTCAACAGCACTGTATTAAATACTTCAAAATTGCTAAGAGA-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------CTAGATCTTAAA-TGTTC-TCACCACAAAAAAGAAA-TGGTAACGATGTGACAGGACAGAGGT
GTAAGCTAAAGCCATGGTGGTGATCATATCGCAACAGATAAATGTATTACATCAATATGTTGTACACCTTAAACAT-ATA
CAATGT--TATTTCTGTTATAGCTCAA----TAAA-------------AAGTCTTATAATTG---AA-----TCTTAGAC
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------TGTTATTTTTT--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------CATTGCTACTAAGTTGTACTATCAGCATTTCACA-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------CAATCTCTATTTGATTTTC
>Ceratotherium_simum
AAAACCTGCATGTCACAACACATATAGACCTTTCCTTACT--TTACTCAATT---AAATCCTGTAA--------------
-TTGGTCAACGGCACTGTATTATACACTTCAAAATTGCTAAGAGA-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------CTAGCTCTTAAA-TGTTC-TCACCACAAAGAAGAAA-TGATAATTATGTGACGTGATGGAGGT
ATTAGCTAACACTGTGGTGGTAATCATATTGCAATAAATAAATGTATCAAATGAACACATTGTACACCTTAACCTT-ACA
CAATGT--TATGTCAGTTATATCTCAA----TAAA-------------AAATCTTATAATTG---AA-----CCTTAGAT
TGTTATTTTTTTCTCTTTTTTGGTGAGGAAGTCTGGACCTGAGCTAACATCTGTGCCCATCTTCCTCTATTTTGTATGTG
GGACGCCACCACAGCATGGCTTGATGAGCGGTGCATAGGTCCATGCCGGGATCCAAACCTGTGTACCCCGGGCCCGTGAA
TAGGAGTGCGCGAACTTAACCACTACGCCACTGGGCCAGCCCCTGTTATTTTTT--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------CATTGCTATTTAATTGTAATATCAGCATTTCACA-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------CAATTGCTATTTGATTTTC
>Myotis_myotis
GGACTCCATTTGTCACAATTTATAGGGACCCTTCCTGATT--TTATTTGATC---AA-TCTCACAA--------------
-CTGGTCAACAACCCTACATCATGTACTTCTAAATTCCTAAGGGATTAGACCAGGGGTCCTTAAACTTTTTAAACAGGGG
CCAGTTCACTGTCCCTCAGACCGTTGGAGGGCTGGACTATAGTTTAAAAAAAAACTATGAACAAATTCCTATGCACACTG
CACATATCTTATTTTGAAGTAAAAAAACCAAAACGGGAACAAATACACTATTTGTATTTGCATGTGGCCCGCGGGCCGTA
GTTTGAGGACCCCTGGATTAGATCTTCAA-TGTTC-TCACCACGAAAAAGAAA-GGATAATTTTGTGGTGTGATTGAGGT
GTAAGCGAAAGCTATGGCAGTAACCATATTGCAGTATGTAAATGTATAACACCGGCAGGCTGCACACCCGAAGCCT-CCA
CGTTGTTGTATGTCATCTCTAGCTCAA----TAAAA------------ATATCTCATAA-TG---AAAAAAATCTTAGCT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------TGTCATTTTT---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------CACTGCCATTAAGTTGTAATATCAGCATTTTACA-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------CAATCCCTATTTGATTTTC
>Rousettus_aegyptiacus
GACATCCATATATCACAATATATATTGACCCTTCCTGACT--ATGCTAAATT---AAATC--ATAA--------------
-TTGGGCAATAATGCTGTATTATATACTTCAATATTGCTAAGAGA-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------CTAGATCTTAAA-TGTCC-TCACCACAAAAAAG------------AAATGACCTGATAGAGGT
ATTAGCTAAATCTGTGGTGG-AATCATCTTGCAATATATAAATGTAGCAAATCAGC-------ACACCTTAAACTT-ACA
CAATATCATATGTCAGTTACATCTCAA----TACAA------------AAACCTTATAATTG---AA-----TCTTAAAT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------TGGTATTTTTT--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------CACGAC--TTAAGTCGTAAT-TTGGTATTTTACA-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------CAA-CCCTATTTGATTTTC
>Condylura_cristata
AGAAAATTCATGTTACAATGCGTATTTCTCCCCCCTAATT--TTACTCAATT---AAATCTTACTG--------------
-TTGCACAATAATACTGCATATAGAA-TTCAAAGTTGCTAGGAGA-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------CCGGGTCTGGGGATGTGC-TCACAGCA-AAACAAAA-CCATAGTTTTGTGACGCAATGGAGGT
GTGAGCTGAAGTTGGGGAGCTAGCTGGGGTGCTGTTGATAAGTGAAGTGGATGAA------------CTTGAACTCAACA
GAGAGTGCGAGGTCAA----ACCTCAA-----GAA-------------AAAAATCTTA-TTG---AA-----TCTCAGTT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------TATTATTACTT--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------CAATGCTATCAAACTCT-CTCTATATATTTTTTAAAGTTTA
TTCTGTATGCATATAGAACTGGGGTACAGGCCAGAGGTGAACTGGGGTACAGGCGGGGGCGGTGAGAGGATTCACCAGAG
ACAGAGTGGGGGGCCTAACAGGCAGGCTGACGAAGTACACCGCTGAGGGGAGCAGCGGGGGTCAGGAGAGGTCTGCCGCG
CCTTGTGGTCACCTTCAGGGCCTCAGCTAAGGGGCTGCAGCCAGCTTGCAGTGCTGTAACCCACTGCTCCCCAGGGAGGG
CCTCAAAGTTACCAAAGTCTAACATTTGCAAGTCTAACATTTGCACTGCGGGCAGTCTCTATTTGGTCTTC
>Erinaceus_europaeus
GAAACCTATGTGCCACAACATATATTGC--TTTTCTGACT--TCACACAATC---AAGTTACATAT--------------
--TGGTCAATAATATTGTATAACGTATTTTCAGATTGCTAAGAGN-----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------NNNNNNNNNNNNNN---NN-----NNNNNNNN
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------NNNNNNNNNNN--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------NNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
>Canis_familiaris
AAAACACATATGCCACAATAAATATTGACCCTTCCTGACTGACTCCTCAATG----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------AAATCTTATAAGTG---AA-----TCTTG---
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------GTTATTTCTT--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------CGTTGTTATTAAATTGTCATATCAGCACTTCACA-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------C--TCTCTATTTGGTTTTC
>Felis_catus
AAAACGCATATGCCACAATATCCATTGACCCTTCCTGACT----ACTCACTC----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------AAATCTTACAACTG---AA-----T-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------GTTACTTTTTTGT-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------CGTTGTTGTTAAGTTGTGGTATCAGCACTTTACC-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------CCGTCCCCATTTGGTTTGC
>Manis_javanica
AACACCCATAAGTGACAACACATATTGACTCATTTTAACA--TTGCTCAATT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------AAATCTTATAACTG---AA-----TCTTAGAT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------TGTTATTTTTTAAT-----------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------GACTATTACA---CTGCAGTATCAGAATTTCACA-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------AAGTCCCTGTTTGGTTTGC
>Homo_sapiens
AAAGTACATATGACATGGTATATATTGACCCTTCCTGACT--TTATTCAATT----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------AAATATTATAATTG---AC-----TATTAGAT
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------GGTTATTTCTTTATTGCTGTTAATTTTTTTTTTTTTT
TGAGACAGTCTCTCTCTATTGCCCAGGCTGGAGTGCAGTGGCGCAATCTCGGCTCACTGCAAGCTCCGCCTCCCTGGTTC
ACACCATTCTCCTGCCTTAGCTTCCCGAGTAGTTGGGACTACAGGTGCCTGCCACCACGCCCGGCTAATTTTGGTATTTT
TAGTAGAGACGGGGTTTCACCTTGTTAGCCAGGATGGTCTCGATCTCCTGACCTTGTGATCTGCCTGCTTCAGCCTCCCA
AAGTGCTGGGATTACAGGCGTGAGCCACTGCACCTGGCCTATTGCTATTAAATTTTAACATCAGCATTTCACA-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------TAGTCCCTATTTGGCTTTC



Pig409_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
-------------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTG-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------ATGTTTTGATATACGTATACATT
GTGAAATGATTACCACAATCAAGCTAATT-AACATATCCATCACCTCACATAGTT---ACCATTTTTTTGTGTGTGGTGA
GAACACTTAAGATCTACTCTCTTAGCAAATTTCAAGTATACAATACAGTATTATTAACTATAGTCACCATGCTGTACATT
---AGATCTCCAGAACTT--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------ATTCATCCTGCATAACTGAAACTTTGTACCCTTTGACCAA----------------------
-------------------------------------------------------------------
>Sus_scrofa
GTGGCTCAAGCTACTCTACTTGAAAAGAAAAAAAT--GAGCTTTTGAATGTTT---ACCTTTCATCCTTTTTTCT---TT
CTTTGACATTTTGATTT----ATTTTATTGTGATATAATTGACATGT-AACA---TATTAGTTTCAGGTGTACAACATA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------ATGATTCAAAATTTGTATGTACT
AAGAAATGATCACCATA--------AGTCTAAC--ATCTGCCACCATATGTAGTT-ACAAAACATTTTTTCTTACGATAA
GAGCTTTTAAGATC----TTCTTAGCAACTTTCAAATATGCAATATAGCATTATTAGCTATTGTCACCATACTGTATGAG
---TCACCCCCATGATTG-TGTATTTTATAACTGGTCTC-----------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------ATGTATTTTATAACTAG------------------------ACTTTCAGCCATTT----C
CAGTGTTT-----------ATACAGGCCTTTTACATGGTT-----AACATGAATTTATATTCACTAT
>Tursiops_truncatus
GTAGCTGAAACCACTCTACTGGAAAAGGAAAAAAC--GAACTTCAAAATGTTT---ACCTCTCATTCTTTTTT-------
---TGACATTTTAATTT----ATTTCATTGTGATGTAATTGACATAT-AACAC--TATTAGTTTCAGGTATACAACATAA
ATGATTTGAATTTTTTTATAAATTTATTTTTATTTTTTTCTTTCTTTATTTTTGGCTGCATTGGGTCTTCGTTGCTGCAT
GAGAGCTTTCTCTAGTTGCAGCGAGCGAGGGCTACTCTTTGTTGTGGTGCGCGGCTTCTCATTGTGGTGGCTTCCCTTGC
CGCGGAGCACGGGCTCTAGGCACGCAGGCTTCAGTTGTTGTGGCAAATGGGCTCCAGTAGTTGTGGCTCGCGGGTTCTAG
AGCGCAGGCTCAGTCGTTGTGGTGCACAGGCTTAGTTGCTCCGTGGCATGTGGGATCTTTGCAGACCAGGGCTTGAACCC
GTGTCCCCTGCGTTGGCAGGTGGACTCTTAACCACTGCGCCACCAGGGAAGTCCCAGATGATTTGAATTTTGTGTATATT
GAGAAATGATCACAATA--------AGTC-AAC--ACCCATCACCATACATAGTTCACAAAAC-TTTTTTCTTGTGATGA
AAACTTTTAAGATCTGCTTTCTTAGCAACTTTCAAATATGCAATACAGCATTATTAACTGTCGTCACCATGCTGTACATT
---ATATCCCCATGACTGATGTATTTTATAACTGGACTTTCAGCCCCTTTTCAGTTGTTTATACGGACCTTTTACATGGT
TAACATTAACACTATTAGTTTCAGGTATACAACATAAATGATTTGAATTTTTTTATTAGTTCACAAAACTTTTTTCTTGT
GATGAAAACTTTTAAGATCTGCTTTCTTAGCAACTTTCAAATATGCAATACAGCATTATTAACTGTCGTCACCATGCTGT
ACATTATATCCCCATGACTGATGTATTTTATAACTGG------------------------ACTTTCAGCCCCTTT---T
CAGTGTTT-----------ATACGGACCTTTTACATGGTT-----AACATGCATTTATATTTACTAT
>Equus_caballus
GTAGCTGAAGACACTTTGCTGGAAAAGAAAAAAAT--GAACTTTAAAATGTTT---ACTGTTTACCTTTTTATCT---TT
TTTTTACATTTTAATTTATTTGTTTTATTGAAATATAACTGACATAT-AACATTATATTCGTTTCAGATGTAGCATATA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------ATGATTTAATATTTACGTATATT
AAGAAATGATCACCACAGTAAGTTTAGTC-AAC--ATCTATCCCCATGCATAGTT-ACAAAATTCTTTTTCTTGTGATGA
GAAATTTTAAGATCTACTATCTTAGCAACTTTCGAATATACTGTA-AG---TATTAACTACAGTCACCACGCTGTATATT
ATCACATCCCTATGACTT--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------ACTTATTTTATAATTGT------------------------ACTTTCAACTTGTTT---T
CAATGCTT-----------ATAGAGACCTTTTACGTGGTT-----GACATGCATTTATATTTATTGT
>Ceratotherium_simum
GTAGCTCGAGCCACTTTGCTGGAAAAGAAAAAAT---GAACCTTAAAATGTTT---ACCTCTCATTTTTTTATCT---TT
TTTTGACATTTTTATTTATTTATTTTATTGAGGTATAATTGACATAT-AACACTATATTAGTGTCAGATGTATAAAATA-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------ATGATTTGGTATTTATATATATT
GAGAAATGATCACCACAGTAAGTCTAGTC-AAC--ATCTGTCACCATACACAGAT-GCAAGATTTTTTTTCTTGTGATGA
GAACTTTTAAGAACTACTCTTTTACCAACTTTCAAATACACAATACAG---TATTAACTATAGTCATCATGCAGTATGTT
ATTACATCCCTATGACTT--------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------ATTTATTTTATAAGTGT------------------------ACTTTCAACTTTTGT---T
CAATGTTT-----------ATGCAGGCTTTTTTCATGGTT-----GACACGCATTTATATTTACTGT
>Canis_familiaris
GCAGCTCAAGCCACTTTGCTGGAAAA---AAAACCCTGAACTTTAAAATACTT---ACTTTGCAGCCT---TTGT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------T
CATT---------------ATACAGGCATCTTACATGATT-----GACCTGCATTTATATTTACTGT
>Felis_catus
GTGGCTCAA--------GTTGGAAAAGAAAAAAAA--AAACTTTAAAATACTT---ACTTTACAGCT----TTGT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------T
CATTGTTT-----------ATACAGGCATTTTACATGGTT-----GACCCGCATTTATATTTACTCT
>Manis_javanica
GTGTCTCAAGCTACT--GCTGGGAAAGATAAAAAT--GAACTTTAAAATATTT---CCCTTTCAGCCT-TTTTTT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------C
AGTTGTTT-----------ATACAGACATTATACA--ATT-----AACAGGTATTTATATTCACTGT
>Myotis_myotis
GTGGCTCAAGCCACTTTGCTGGAAAAGAGAAAAAT--GAACTTTAAAATGTTT---ACCGTTCAGCC----TTTT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------T
CAATATTT-----------ATGCAGACACTGTAAATGGTT-----GACATATACTTGTATTTTCTGT
>Rousettus_aegyptiacus
GTAGCTCAAACCACTTTGCTGGAAAAGAGAAAAAT--GAACTTTGAAGTGTTT---ACTTCTCAGCCT-TTTTTT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------T
TAGTATTT-----------ATACAGGCATTTTACATGGTT-----CATATGCATTTATATTTACATT
>Condylura_cristata
GTGATTTAAACCATTTTATTGGAAAAGAAAAAAAC-------TTAAAATGTGT---GCCTTTCAAGTT---TTTT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------T
CCATGTTTATACAATGTTTATATAGACATTTTATATGGTTGTATAGGTATGCATTT---TTTATTGC
>Uropsilus_gracilis
GTGGTTTAAGTCATTTTGTTGCAAAAGAAAAAAAC------TTTAAAATGTGT---GCCTTTCAGTGA-TTTTTT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------T
CAGTGTTT-----------ATGCAGATAGTTTACATGATT-----TTTATGTATTTG-ATTTACTCT
>Homo_sapiens
GTAGCTCAAGCCACT-TGCTGGAAAAGAAAAAAAAAGGAACTTTAAATTGTTT---ATCTTTTAAACT---TTTT-----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------T
CAGTGCTC-----------ACACAGACACTTTACATGGTT-----GGCATGCATTTATACTTA-TGT



Pig434_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
-----ATGGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGTACAG
CATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATC-TTAAGTGTTCTCACCACA
CACAAAAAAA-----------------TGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCAT
TTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAA
TAAAGCTGGAAAAA------------------------------------------------------------------
----------------------------------------------------------
>Sus_scrofa
CCA-TTTCCCC-CTGGGAATGGGGGAATTAGTAAGTGGGGA-TTCCTTACTCCTTTGTTGGATTT---GAAATTCCAGAC
TT--------------GGGGTCGAAAAGTACCAACTTCTA--------------ATAAATACTAGGGAGGTAATATACCA
TATGATG---------------GTGGTGTGGTATATTTGAAAGTCGGTAAGAGAGTAGATT-CTAAAAGTTCTTATGACA
AGGAAGAACACATTTTTCTTCTTCTTTTTGTATCTATACAGACTGATGG--ATGTTAACT-AACTTATTGTGGTAATCAT
TTCACAATATAT--GTAAGTCAAGCCATTATGCTGCACTCCTTAAACTTATACAG-TGCTGTATGTTAATTATA--TCAA
TAAAACTGAAAAAC--AAAAATAAAAAATAAGAACAAAATAAAACACAAAA---GAAATTATTGACTT---TATTGTCTG
GG-TCTAGTCCTTCCTGGACTCCATGAGCCCACAATTTAGGCTTGTCCTTACTATGCT
>Bos_taurus
CAG-TTTCCCCATTGGGAATGG--------GGGTGTGGTGGAGTCCTTACTCCTGGGTTGGATTT---GAAATTCCAGAC
TT--------------GTGGTCAAAAGGTACCAACTTACAGTTGT--AAA----ATAAGTACCAGCGAGGTAACATACAA
TGTCATGACTGCAGTTAACATTGCCGTGTGATATATTTGAAAGTTAGTAAGAGATTAGGTC-TTAAAATTTCTCATGACA
GAGCAAAACACATTT------CTTTTTTTGTATCTATATAAGCTGATGA--ATGTTAACTAAATTTATTGTGGGAATCAT
TTCACAAT-TAT--GTAGGTCAAGACATTATGCTGTACACCTTGAATTTGTACAG-TGCTGTATGTTAATTATATCTCAT
TAAAACTGAAAAAATGAAAAATTAAAACATAGAACAAAACAAAGCAAAAAA---GCAATCCCACACTT---TACTGTCTG
GG-TTGGGTCCTTCCT----------------TACTTACTGCTTGCTTCCTTACTGCT
>Myotis_myotis
CAG-CTTCCCCACTGGGAATAGGGGGG---GGGATTGGTGG-TTCCTTATTCCTTGGTTGGAGTT---GAAATTTCAGAC
-T--------------GTGGTCAAAAGGTACAAACTTCCAGTTAT--AAGACACATAAGAACTAGGGATGCGATGTACAA
TATGATGACTATAGTTAATACTGCTAAATGGTTTCTTTGAAAGTTGTTAAGAGAGTTGATC-CTAGAAGTTCTCATCACA
AGGAA----ATGTTT---TTTTCTTTTTTGTATCTCTATGA---TGTGG--ATGTTAAGTCAACTTACTGTGGTAATCAT
TTCACAATTTAT--GTAAGGCAAGCCATTATGCCGCACACTTCAAACTCATACAA-TGCTATATGTCAATGATACCTCAA
TAAAACTGAAAAAT----AAATTAAAGTGAAAACAACAACAAA----AAAA---TAAATTTCATAGTT---TACTGTCTG
GA-TCATGTCCT---------CTATGGGCCCACGTGTTAAGCTTGCACTT--ACTGTG
>Rousettus_aegyptiacus
CGG-TTTCTCCACTGGGAATGG--------AGGTGTGATAA-TTCCTTATTCCTTGATTGGAGTT---GAAAGATAAGGC
TT--------------CGGGTCAAAAGGTACAAACTTCCAGTTGT--AAGATAAATAAGTCCTTGGGATGTAATATACAA
CATGGTGGCTATAGTTAACACTGCTGTGTGCTATCTTTGAAAACTGCTAAGAGAATAGACCTCTAAAAATTCTCATCACA
AGAAAAATAAC----------TTTTTTTGGTATCTATTTGAGATGATGC--ATGTTAAGTAAAGTTATTGTGGTAATCAC
TTTATAATATTT--GTAAGTCAAGCAATTATGCCATACACATTAAACTTATATAG-TGCTGTATGTCAATTATACATCAA
TAAAACTGGAAAAG----AATATAATGAAAAAATGAAAACAAAACAAAAAA---GAAATTTCAGACTT---TACTGTCTG
GG-TCAGGTCCTTCCTGGTTTCTATGGGCCCACATGTTAAGATTGCACTT--ACTGCT
>Canis_familiaris
CCG-TTCCCCTACTGTGAATGGTGGAGG--GAGGGGGGTGG-GTCCTTATTCCTTGGTTGGAGTT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------GAAATCCCAGACTT---TACTGTCCG
GA-TCAGGTCCTTCCTGGTCTTCCAGGGCCCACACTT---------------ACAGCT
>Felis_catus
CTG-TTCCCCTACTGTGGGTGGGGGGAGA-GGATGCGGCGG-TTCCTTATTCCTTGGCTGGAGTT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------GAAATTCCAGACTT---TACTGCCTG
GG-TCAGGTCCTTCCTGGTCTCTAAGGGCCCACACTTAA-------------ACAGCC
>Manis_javanica
CAG-TTTCCCCACTATGAATGGG-------GTGTGTGGTGG-CTCCTATTTCCTTGGTTGGACTT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------GAAATTCCAAACTT---CACTGTCTG
GG-TCAAGTCCTTCTTGGTCTCTATGGGCCCACACGTCAAGCTCACCCTTA-ACTGCT
>Equus_caballus
CAGTTTTCCCCACTGTGAACGGGGT-----GGGCGGGGTGG-TTCCTCATTCCTTGGTTGGAATT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------GAAATTCCAGACTT---TACTGTCTG
GG-TCAGTTCCTACCTGGTCACTATGGGCCCACACGTTAAGCTCACGCTT--ACTGCT
>Ceratotherium_simum
CAG-TTTCTCCACTGTGAATGG--------GAGAGTGGTGG-TTCCTTATTACTTGGTTGGAGTT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------GAAATTCCAGACTT---TACTGTCTG
GG-TCAGGTCCTTCCTGGTCACTATGGGCCTACACATTAAGCTCACACTT---CGGCT
>Condylura_cristata
CAG-CGGTGCCATTTGGAATGGG-------GGGCACAGTGG-TTCCTTATTTGTGGGTGGGAGTT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------AAATTTCACACTT---TACTATCTG
AG-TCAGGTCCTTCCTGTCCCCTGTGGGCCCACACATTAAGCGAGCATGC--TGTGCC
>Erinaceus_europaeus
CTG-TTCACCACCAGAGAGGGGGTGGGGGTGCGCATGGCGG-TTCCTTATTCCTCAGTTGGAACT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------GAAATTCTAGCCTT---TACTGTCTG
GATTTGGGGTCTTCCGGGTCTTGAAGGACCCACA-TTTGAGCTTACACTT--ACTGCT
>Homo_sapiens
CAG-TTTTC---CTGTGAATAG--------GTGTGCAGTGG-TTCCTTATTCC----TTGGAGTT---------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------GAAATTCCAGACTT---CGCTATTTG
TG-TCAGGTCCT----GGGTGCTATGGGCCAATGCGTTAAGCTCCCACTT--ATTGCT



Pig450_LINE

>L1MA9_3END
--------------------------------------------------------------------------------
----------------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACG
TGATGTTTTGATATACGTATACATTGTGAAATGATTACCA---CAATCAAGCTAAT--TAACATATCCATCACCTCACAT
AGTTACC--ATTTTTTTGT--GTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAAATTTCAAGTATACAATACAGTA
TT--ATTAACTATAGTCACCATGCTGTACATTAGATCTCCAGAACTTATTCAT---------------------------
--------------------------------------------------------------------------------
-------------------------------------------
>Sus_scrofa
TATAAATTAA-TTTATAGCTTGCTTT----------------TGATATTGA----TCCCAGT-GAAGAACGT------AT
CT-----TTCA-------CTATTTTTAAAATTGAGGTGAAATTGCCG---TAACATGTTAGT--TTTCAGTTATACAATG
TAATGATTTCACATTTCTATGTGTTGCAAAGTGATTACCA---CAGTAAGTCCAGT--CAAC--ATTTGTAACCATTCAT
AGTTACCTTTTTTTTTTTTTCTGACAATGAGCACTTTGAAGGTTCGCTCTCTTAGCTATTTTCAAATGTGCAATACAGTA
TT--AAAAAATATTGGTAACATACTGTGCAGTAGATAGCAGTGCCTTAACCATGTGCGTGTTGTCAGGCCTGAGTGCCTC
TTCCATTCATGTCAAGGAGAGT-CTGACTTT--TTCCTTTTATACA--ACAAC---AAAACACCTTT---CATTCATCTA
AGATGTTTTGT--TTCTTAGTGTCA-TTTAATATTTTCTTCAT
>Vicugna_pacos
TATAAATTAA-TTTATAGATTGATTT----------------TGCTATT---TCATCCTAGC-AAAGAATAC---AAGAT
AC-----CTTT-------CATTTGTTTAAACTAAGGTGTTTATGACA---TAACA-----TTAATTTCAGGTATGCAATG
TAATGATTTGATATTTGTAGACATTGCAAAATGATTACCA---CAGTAAGTCTGGT--TAAC--ATCCATACTCATACAT
ATTTACA--GTTTTTTTCCTTTGGTGGTGAGAACTTTGAAGATCCATTCTCTTAGCTATTTTCAAATACGCAATACGGTA
TT--AAAAAGTGATGGTTAGATACCATGAAGTAGATAGCAGTACCTTAACTGCATGCATGTTGTCAGGCCTGAAGGCCTG
TTGCATTCCTGCTAAGGAGAGTGCTAACCTT--CTCTTTTCTGATAATACAAG---AAGATGCATTT---CATTCATTCA
AGATATTTTATGATTCTTAGTGTCATTTTAATGTTTTCTTCCT
>Equus_caballus
TATAAGTTAA-TTTATAGATTGATTT----------------TGATATTTGGTCCTTCTAGT-GAAGAACAC---AAGAT
AC-----CTTT-------T-ATTTTTTTTATTGAGGTATAATTGGCA---TAATATTGTATTGGTTTCAAGTGTACGAAG
TAATGATTCAATATTTTTGTATATT-CAAAATGATCACCA---CAGTAAG-CCAGT--TAAC--ATCCAGCACCATGCAT
AGTTGCA--ATTATTTTTTTCTTGTGCTGAGAACTTTCAAGACCCACTCTCCTAGCTATTTTCAACTGTGCAATACAGTA
TT--AAAAAACGATGATTAGATGCCACAAAATCGGTGGCAATGCCTTAACCATATGCTTATCGTCAGGCCCAAGCGCCTC
TTCCATACTTGTCAAGG-GAGTGCTAACCTTCGCTCTTTTCATGCACTAT------TAGATACCTGT---CATTCATTCA
AGGTATTTTATGCTTCTCAGTGACATTTTAATGTTTTCTTCAT
>Ceratotherium_simum
TATAAGTTAA-TTTATAGATTGATTT----------------TGATATTTGGTTCTTCTAGT-GAAGAACAC---CAGAT
AC-----CTTT-----------TTTTTTTATTGAGGTGTAATTGACA---TAACA-----TTAATTTCAGGTGTACAGCG
TAATGATGGGATATTTGTATATGTTCAAAAATGATCACCA---CAATAAG-CCAGT--TAAC--ATCTGTCACCATGCAT
AGTTACA--GTTTTTTTTCTCTTGTGATGAGAACTTTCAAGGTCCACTCTCCCGGCAATTTTCAAATATGCAATGCAGTA
TT--AAAAGATGATGCTTAGATGCCACAAAGTAGGTGGCAAGGCTTTACCCATATGCTTGTTGTCAGGCCCAAGGGCCTC
TTCCATCCTTGTCAGGGAGAATGCTAACCTCCTCTCTTTTCATACACTAC------TAGATACTTTT---CATTCATTCA
AGATATTTTATGCTTCTCAGTGACATTTTAATGTTTTCTTCAT
>Myotis_myotis
TATAAATGAA-TTTATAGATTGCTGT----------------TGATATTTGGTCCTACTAGC-AAAGAACAC---AAGAT
TC-----TTTT------------TTTTAAATTGAGGTGTAATTGACA---TAACATAACATT-ATTTCAAGTGCACAGTG
TAATGATTTCATATTTGAATATATAGGAAAATGATCATCACTGCAATAAATTCAGT--TAAC--ATCCATCACTAT--AT
AGTTACA--GTTTTTTT----GTGTGATGAAAACTTTCAAGATCCACTCTCCTAACTATTTTCAAATACGCAATACAATA
TT--AAAAAACAAAGGTTAGCTGCTGTGAAGTAGGTGGCAATGCCTTAATCCTATGCATGTTGTCATGCCCGAGCACCTT
TTCCATCCTTGTCATGGGGAGGGCTAACCT---CTCCTTTCATACAACACTAT---AAGATACCTTT---CATTCATTCA
AGGTATTTTATGCTTCTCAGTGGTACTTTAATGTTTCCTTCAT
>Rousettus_aegyptiacus
TATAAATCAA-CTTATAGATTGATGT----------------TGATATTTGGTTCTACTAGA-GAAAAACAC---AAGAT
AT-----CTTT---CCTTTTTTTAAAAAAATTGAGGTATAATTGACA---TAACATTACATTAGTTTTAGGTATACAATT
TAACGATTTGATATTTATATATATAGCAAAATGAACATCA---CAATAAGTCCAGTTATAAC--ATGCATCACCATACAT
AGTTACT--TTTTTTTTTTT-------TGAGAACTTTCAAGATCCACTTGCCTAGTTATTTTTACATTTGCATTACAGTA
TTTAAGAAAATACTAGGTAGATGCCACAAAGTAGGTGGCAATGCTTTAACCATATGTTTGTTATCAGGCCCTAAGGCCTC
T--------TGTCAGGGGGAAGTCAAATCTTCTCTCCTTTCATTCAGTACTGC---AGGACATCTTT---AATTCATTTA
AGATATTTTATGCTTCTCAGTGGCATTTTAATATTTTCTTTAT
>Canis_familiaris
TATAAATTAATTTTACAAGTTGATTT----------------TGGTATTTGATTCTTCTAGC-AGAGAACAC---AAGAC
AC-----CT-T---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------CATCCA----
-------------------GTGGCATTTTAAGGTTTTCTCCAT
>Felis_catus
TATAAGCTAA-TTTATAAGTTGATTT----------------TGGTATTTGGTTCTTCTAGC-AAAGAACAC---AAGAC
AT-----CCTT---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------AATTCA----
AAATATTTTGTGCCTCTTGGTGGCATTTTAAAGTTTTCTCCAT
>Manis_javanica
TATAAATTGA-ATTATAGATTGATT-----------------TGATGTTTGGTCTTTCTTGC-AAAGAACAC---AAGAT
AT-----CTCT---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------TGGTGGCATTTCAGTGTTTTCTTCAT
>Condylura_cristata
TAAAAATAA--TGTATAGAATGAATT----------------TGATGTGTGGTTTTTCT----AATGA-TA----AATAC
AC-----CCAT---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------CATTCATTCC
AAATATTTTCTGCACCTCACTAGTATTTTAATGTTTTCCTAGC
>Uropsilus_gracilis
TATAAAACAA-TGTATA-ATTGAATT----------------TGAGGTGTGATCTTTCG----AGAGA-TA----AAGAT
CG-----CTTT---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------TATTC-----
----------------TGAGT---ATTTTAATATTTTCTTCAT
>Homo_sapiens
TATAAATTGT-TTTATAGATTGATTTAGGATAAACCTTTTTATGTTATTTGGTCCTTCTAGCTAAAGAACAC---AAGAT
ACCTTTTCTTT---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------CATTCATTCA
AGATATTTTATGCCTCTTGGTTGCATTTTAATGCATACTTCAT



Pig451_LINE

>L1MB2
------------------------------------------------------------------------------AT
GAACCTTGAGGACATTATGCTAAGTGAAATAAGCCAGTCAC--AAAAAGACAAATACTGTATGATTCCACTTATATGAGG
TACCTAGAGTAGTCAAATTCATAGAGACAGAAAGTAGAATGGTGGTTGCCAGGGGCTGGG---GGGAGGGGGAAATGGGG
AGTTGTTGTTT---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------AATGGGTATAGAGTTT--CAGTTTTGCAAGATGAAAAAGTTCTGG-AGATCGGTTG
CAC-AACAATGTGAATATACTTAACAC----TACTGAACTGTACACTTAAAAATGGTTAAGATGGTAAATTTTATGTTAT
GTGTWTTTTACCACAA----TTAAAAAAA---------------------------------------------------
--------------------------------------------------------------------------------
---------------------------
>Sus_scrofa
ATCACCAAGGTATCTTCTCTGAA--TAGATACACT--TCTCCAAAGGGTTTAGA---TGAGGCAAGTAAAACTTG-----
--------AAGATACTAGGCTAAGTGAAATAAGCTAGTTGC-AAAAAAGACAACTACCGTGTGGTTTTGCTTGTATGAGA
TACCAATAGTAGTCAAACTCATGGAAATAAA----------TTATGTGCCCAGGGCTAGGGGAGCAAGGGTGGAAGGAGC
AGGTTTTTTTTTTTCGCTATTTCTTGGGCCGCTCCCGCGGCATATGGAGGCTCCCAGGCTAGGGGTCGAATCGGAGCTGT
AGCCACCGGCCTACGCCAGAGCCACAGCAACGCGGGATCCGAGCCGCGTCTGCAACCTACACCACAGCTCACGGCAACGC
CAGATCGTTAACCCACCGAGCAAGCGCAGGGACCGAACCCGCAACCTCATGGTTCCTAGTCGGATTCGTTAACCACTGCA
CCACGACGGGAACTCCCATGGAGCAGTTGTTTTTTAATTTCCCCGTTCTGTAAGATGAAAAAGTTCTGGAAGGTCTGCTT
CAC-AGCAATGTGAATACACTTGGCTG----TACTGAAAGGAATACTTAAAA----------------TTTTTATGTTAT
ATGAATTTTATCACAA----TTCAAATGAA--------------------------------ACAAGCAAGTAAACTG--
-CTGT---AATCCCAGGCAGTCTTCCCAAGAACGGATACTCTCCCACCATTTGCAGTATGTCATTTTTGTCTTCCTTTCA
GTCTCTAGGAAGGAA-ACCTCTCTCAC
>Tursiops_truncatus
ATCACCAAGGTAGCTTCTCTGAT--TAGTTACACT--TCTCCCAAGGGTTTAGA---ACAGGCAAGTAAACCTTG-----
--------AAGATACTATGCTGAATGAAATAAGCTAGTCACAAAAAAAGAGAACTACTGTATGGTTTTGCTTATATGAGG
GACCAATAGTAGTCAAACTCATGGAAACAAA----------GTGTGTGCCCAGGGCTAGAAG-GCAAGGGAGAAAGGAGC
AGTTGTTGTTT---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------AATGGTTATATAGTTTCCCCATTCCCCGAGATGAAAAAGTTCTGG-AGATCTGCTT
CACAAACAGTGTGAATATACATAACTG----TACTGAAAGGTACACTTAAAA----------------TTTTTATGTTAT
ATACATTTTATCACAA----TTAGAACAAA--------------------------------ACAAGC-AGTAAATTG--
-CTGT---AATTCCAAGCAGTATTCCCAAGAACGGACACTTTCCTATCATT--------------TTCGTCTTCCTTTCA
ATCTCTAGGAAGTAA-GCCTCTCTCAC
>Equus_caballus
ATTGTCAAGGTATCTTCTCCACT--TAATTATACT--TCTCCCAAGGGTTTAGA---AAAAGCAAGTAAACCTTG-----
--------AACACATTATGCTGAGTGAAATAAATTAATCAC--AAAGAAGCAAATACTGTATGATTTCACTTATATACGG
TATCAAGAGTAGCCAAACTCATGGAAACAAA----------GCAGTTCCCAGGGGCTGGG---GTTAGGGCAAAATGGAA
AGTTGTTGTTT---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------AATAAGCATACAGTTT--CAGTTTTGCAAGACAAAAAAGTTCTGG-AGATCTGTTT
CTC-AACAATGCGAATATACTTAATAC----TGGTGAAATGGACATTTAAAAATGGTTAAAGTGGCAAACTTTATGTTAT
GCATATTTTATCACAA----TTTAAAACAAAAAGCAAAACAACAACA---------------AAAGGCAAGTAAATTGCT
GCTGT---AATCC-AGGTAGCATTCTCCAAAACTGGTACTTTCCTACCATTAGCAGTGTCTCATTTTTGTCTTCCCTTTA
ATCTCTAGGAAGTAA-GCTCCTCTCAC
>Ceratotherium_simum
ATTGCCAAGGTATCTTTTCCGAT--TAATTACACT--TCTCCCGAGGGTTTAGA---AAAGACAAGTAAACTCTG-----
--------AAGATATCACGCTAAGTGAAATAAACTAGTCAC--AAAAAAACAAATACTGTGTGATTTCACTTATATAAGG
TATCAAGATTAGTCAAACTCATGGAAAAAAT----------GCAGTTGCCAGGGGCTGGG---TTTAGGGCCAAATGA--
AGTCG---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------AGTTT--CAGTTTTGCAAGATGAAAAAGTTCTGG-AGACCTGTTT
CTC-AACAATGTGAATATACTTAATAC----TACTGAACTATACACTTAAAAATGGTTAAAATGGCAAATTT--TTTTAT
GTATACTTTATCACAA----TTTAAAAAAACAAAAAGCAAAACAACAACAACAACAACA---AAAGGCAAGTAAATTGCT
GCTAT---AATCCCAGGCAGCATCCCCCAAAA------CTTTCCTGCCATTTGCAATGTCTCATTTTTGTCTTCCCTTTA
AACTCTGGGAAGTAA-ACTCCTCTCAC
>Myotis_myotis
ATTGTGAAGGTATCTTCTCTGAT--TAGTTATACC--TCTCCTAAAGGTTTAGA---AAAGGCCAGTAAACCTTG-----
--------GAGACATGATGCTAAGTAAAATAAATTAGTCAC-AAAAAAGACAAATACTATATGATTTCACCTATATGGGA
TATCAAGAGTAGTCAAGCTTATGGAAACAA-----------GTGATTGGCAGGGGCTCAG---GTAAGAGTAAAATGGGG
AGTTGTT-------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------AATGAGCAT--AGTTT--CAGTTTTGTAAGAT--AAAAGTTCTGG-ATGTCTGTTT
CAC-AACGATGTGAGTATACTTAATGCTACTTACTAAACAGTACACTCCAAG-CGATTAAGATGGTAAATTT------AT
GTCCATTTTATTATAA----TTTTAAAAAGGAAAGAA-------------------------AAAGGCAAATAAATTAC-
-TTGT---AATTCCAGGCAGCATTTCCCAAAACTGCTACTTTTCTACCATTTGTAGCACCTCATTTTTGGTTTCCCTTTA
ATCTGTTGGAAGTAA-ATGGCTCTCAC
>Rhinolophus_ferrumequinum
ATTGCCAAAGTATCTTCTCTGAT--TAGTTCTAGT--TTTCCCAAAGGTTTAGA---GAAGGCAAGTAAAACTTG-----
--------AAGACACTATGCTAAGTGAAATAAACGAGTCAC--AGAAAGACAAATACTGTATCATGTAGCTTATATGAAG
TATCAAGAGTCTTCAAAGTCACGGAAACA------------GTCATTGCCAGGGGCTGGG---CTGAGGGCAAA-TGAGG
AATTGTTGTTC---------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------AATGAGTATAGAGTTT--CACTTTTGCAAGATGAGAAAGTTCTGG-AGAT-TATTT
CAC-AACGAAGTG-----------------------AACTATACACTTAAAAATGGTTAAGATAGTAAATTG--TGTCAT
GTATATTTTATCACGAATGTTTAAAAAAAGGCAAAATAACAACAACAACAACAA--------AAAGGCAAGTAAATTG--
-TGAT---CATCTCAGGCAGCATTCTCCCAAACTGCTACTTTCCTACGGTTCCCAGTGTCTGGTTTTTGTCTTCCCTTTA
ATTTCTGGGAAGTAA-AGCTCTCTCCC
>Canis_familiaris
ATTGCCAAGGTTTCTTCTTTGAT--CAGTTATAAT--TCTTCCAAGAGTTTAGA--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------AAAAGCAAATAGATTG--
-CTGT---CATCCCAGACAGCATTCCCAAGAACTGATACT-TCCTATCATTTGCAACATCCCATTTTAGTCTTCCCTCTA
ACCTTGAAGAAGTGA-ACTCCTCTCAT
>Felis_catus
ATTTCCAGGGTTTCTTCCCTGAT--TAGTTATATT--TCTTCCAAG-GTTTAGA--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------AAAGGCAAGTAGATTG--
-CTGT---AATCCCAGGCAGCATTCCAAAAACCTGATACTTTCCTATCATTTTCAGTATTCTGTTTTTGTCTTCCCTTTA
ATCTTGAAGAAGCAA-ACTCTTCTCAT
>Manis_javanica
ATTGCCAAAGTTTCCTCTCTGAT--TAGTTGTATTTATTTTCCAAG-----AGA--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------AGAGACAAGTAAATTG--
-CTGT---GATCCTAGGCAGCCATTCCAAGAACTGGGACTTTTCCACCATATGCAGCATCCCATTTTTGTCTTCCCTTTA
ATCTTTAAGAAGTAA-ACTCTTCTCAC
>Condylura_cristata
ATGGCCAAGATAGCTTCTCTGAA--CAGTTGCCCT--TCTTTCAAGGGTAAAGA--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------AAACACAAGT----TG--
-CTGT---AAATCCAGGCCACATTTCTAAGAA-TGATACTTTCCT-------GCAGCAT---------------CCCTTA
ATTTCTAGGCGGTGA-CATCTTTTCAC
>Solenodon_paradoxus
ATTGCCAAGTTATCTT---TGAT--TAGTTAGGCT--TCTTCCAAGGGTTCAGA--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------AAAGGTAAGAAAATTG--
-CTGT---AATCCCAGGGAGCATTCCCAAGAACTGGTACT----------------------------------------
----------AGTAG-ATGTTTTTCAC
>Homo_sapiens
ATTGCCAAGCTATCTTCTCTGATTATAGTTATATC--TCTTCCAAGGACTTAGA--------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------AAGGGTAAGTACATTG--
-CCAT---AATCCTAGGCAGTATTTCCAAGAACTAGAACTTCCCTACCATTTGCAGGGCCCTGCGTTTTTCCTCTCTTCA
GTCTCTAGGAACTAAGGCTCCTCTCAC