Supplementary File S1 Alignments of 367 retrotransposon markers for Laurasiatheria interordinal relationships Bat8_LINE >L1MA9_3END -------------------------------------------------------------------------------A AGTGTTCTCACCACACACAAAAAAATGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTT CACAATGTATACGTATA--------------------------------------------TCAAAACATCACGTTGTAC ACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA------------------------ ---------------------------------------------------------------------- >Sus_scrofa CAAA-TAAATGCTCAACT-AGATACACTTTTGCAAATTGCGATAAGTG------CACT---AAAAAAAAAAAGAAA---- -------TCATCATAAGAAAA--AATCATAACCATGTGAGATGATAG--ATATTAACTACATTTATTGTCATAATCATTT TGCAATATATATATATTTATATTTGCAATATATGTATACTTACATACAATATATACTTGTATTAAATCATTGTGTTGTAT GCTTTAAACCAACATAA-GGTTAGGGGTTAATTATATCTCAATACAACTGGAAAAAAGAAGAAAATAGGTA---AAAGTA A----AAGAG---GATGCTCATAT----TCTTGC--ATGAAATCGAAATGTGCTT-AGAGAAACACTGAT >Tursiops_truncatus CAAA-TAAATGCTCAACT-AAATATACTTTTGCAAATTGTGAGGAGTG------CACT---ACAGAAAAAGATGAA---- -------TCATCACAAGAAAAAAAGTTGTAACCATGTGAGGTGATGG--ATGTTAACTGCATTTACTGTGGTAATCATTT TGTAATATATACTTGTG--------------------------------------------TCAAGTCATTATGTTTTAC ACCTTAAACTAATGCAA-GGTTATATGTCAATTGTATCTCAATAAAGCTGGAAAAAAAG------AAGAAA---AAAGTA AAAAAAGGAG---GATGCTTATAT----TCTTGC--ATGGAATCTAAATATGTTT-AGAAAAACACTGAT >Myotis_myotis CAAA-TAAATGCTCAGCT-AAATATGCTTTTGTAAATTGTGATAAGTT------CACT---AAAGG--AAGAAGAG---- -------TCATTACAAGAAAAA-AATTATCACTATGTGAGGTGATGG--ATGTTAATTACATTTATTGTTGTGATCATTT TGCCATATGTACATATA--------------------------------------------GCAAATCAT--TGTTATAT ACCTTAAACTAGCACAA-TATTACATGTTCATTATATCCCAATAAAACTGGAAGAAAAATTT----AAAAA---AAAGTA AAAG-AAGAG---GATGCTTATAT----TCTTGC--ATGAAAT--AAATATGCTT-AGGGGAATGATGGT >Rousettus_aegyptiacus CAAA-TAAATGCT--GTT-AAATACGCTTTTACAAACTGTAATAAGTG------CACT---AAAGGAAAAGAAGAG---- -------TCATCACAAGAAAAATAGTTGTCACTCTGTGAGGTGATGG--ATGTTAACTACATTTATCGTGGTGATCATTT TGCAGTATATACAGATATT------------------------------------------TCGAATCATTATGTTGTAC ACGTTAAACTAATACAA-TGTCATATGTCACCTTTACATCAATAAAACTGGGGAA------AAGGGAAAAA---TAAGTA A----AAGAG---GAGGCTCCTAT----TGTTGC--ATGGAATCTAAATATGTTT-AGAAGAATGCTGGT >Condylura_cristata CAAA-TATACCCTCAAGTAAAAAATGCAAATGTAAAGTGTGATAGAAGATTCATCACA---AAGAA-----AAAAG---- -------------------------------------------------------------------------------- -------------------------------------------------------------TTAA--------------- --------------------------------------TCAATAGAACTGGGGGA----------TGGGAA---AAAGTA A----AAGAA---GATGCTTATAT----CCTTGC--ATGGAATCTAGATGTGTTTAAAAAAAATGCTGGT >Erinaceus_europaeus CACATTAAAAACTTAACT-AAATATATTTTTGTAAATTATGATGAGCG------CATG---AAAGA-----AGAAT---- -----------CCTAAGAAGAAAAAT-----CTATAGGAGATGATGG-----ATGATTACATTTCTTTTTATAATTATTT TGTTACATATA--------------------------------------------------TCAAATTGT-ATGTTGCAT ATTTTACACTGATACAA-TGTTTTGTGTCAATTATATCTCAATGAAACTGGGAGA----------AGGAAA---GGAGTA A----AATAG---GACACTTCTATCTACTTTAGC--ATGGAATCAGAATATATTT-AGAAGAATACTGAT >Canis_familiaris CAAA-TAAGTGCTCAACT-AACTATGCTTCTGCAAACTGTGGTAAGTG------CACT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------AAAGGA AAAG-AAGAG---GCTCCTCATAT----TCTTGAATATGGAATCTAAAT--GTTT-AGAAGAACACTAAT >Felis_catus CAAA-TAAATGCTC-ACT-AAATATGCTTTTGTAAACTGTGGTAAGTG------CACT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------GAAG-- -AAG-AAGAG---GCTTTTCATAT----TCTTGCATATGGAATCTAAAT--GTTT-AGAAGA---CTAAT >Manis_pentadactyla TGAA-GAAATGCTCAGCT-ATGTATGCTTTTGCAAATTATGATAAGTG------CACT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------AAAGAA AATG-AAGAG---GATGCTCATAT----TCTTGC--ACAGAATCTAAATATGTTT-AGAGGAACGCTGAT >Equus_caballus CAAA-TAAACACTCAACT-AAATATGCTTTTGCAGACTGTGGCAAGTT------TACT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------AAAGAA AAAG-AAGAT---AAGGCTCATAT----TCTTGC--ATGGAATCTAAATGCATTT-AGAGTCACGCTGAT >Ceratotherium_simum CACA-CAAATGCTCAACT-AAATATGCTTTTGTAAATTGTGGCAAGTG------CATT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------AAAGAA AAAG-GAGAG---AATGCTCATAT----TCTTGC--ATGGAATCTAAATGCGTTT-AGAGGAACACTGAT >Homo_sapiens CAAA---------CACTC-AAATACACTTTTGCAAATTATGATAAGTG------CACT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------AAAGAA AAAG-AAGAG---AATGCTCATAT----TCTTGC--ATGCAGTCTAAGTGTA-TA-AGAGGAATACTGGT Bat33_LTR >ERV54-EC_LTR ---------------------------------------------------------------TGTT-AAAAACAAGACA ACAGGCC---CAAAATGGAGTCACTTATGCTAAGCCCCACGTCACCAAACCGAGACTTAACTTAATTACAGTTTCGGCTC TCCCAGAAATGGAATCTTAAACCAGTCAATCAGGAATCACCTGATC--AGCACTAG-TTAGGTAATCTGCCTGATAGACC CCTGCCATCCCCTA-AAGGAAAGTAACCTTGCAATAACCAATCCAC-----------TTTTTTGC--------------- -CTAGTATAACTTCCTTGTTCCTGCTCCCTTCTGCCTATAAAAGTCT-TTCATTTTGTACAGCTCCTCGGAGCTCCTTTC TATCTGCTAGATTGGATGCTGCCCAATTCATGAATCATTGAATAAAGCCAATAAGATCTTTAAAATTTACTCAGTTGAA- ---TTTTGTTTTTTAACA-------------------------------------------------------------- ------------------------------------------------ >Canis_familiaris TGTGACAC-AACCACATTTTTAGA-TTCTCTCAC-TACTCATATATTTTAAAA---GCAT---TGTTGAAAAACCAGACA GTAGGCC---CAAAATGGAGTCACTTATGCCAAGCC-CACATCTTTACCCCAAAACTTAA-TT------AGTTTCAGCTC TCTCAGACTTGGAATCCTAAACCAGGCAATTAGGAGTCATCTGATC--AGCATTAG-TTAAATAATCTTCCTGATAAATG TCTACCATACCCC--AAAGGAAAATACCCTGCAATAACTAATTGCCT-----------TCTTTGC--------------- --CTGTACAACTCCCCTGTTTCTGCTCCCCTCTACTTATAAAA-TCCTTTGCCTTGCATTAGCTCTTTGGAG---CTTTC TGTATGTTAGATTGGATGTTGCTCAATTCAAGAATTTCTGAATAAAGCCAGTAAGATCTTAAACTTT-ACTTATTTGAT- ----TTCTCCTTTGAATA---GCAC---TATGCTGTTTTGTTGTTGT--TTTGTTTGCGTTTTGTTTTTGCT-------- --TTTGTTTTTTT-AAGCACATGAGATGTTCTTAGGATTGTTGTAATT >Lynx_canadensis CATGATGC-AACCACATTTTTAGG-TTTTCTCTCACTACTATATA-TTTAAAA---GCAC---TTTT-CAAAACCAGACA GTAGACC---CAGAATGGAGTCACTTATGCTAAGCC-TACATCTTCAAACCTAAACTT-----AAGTACAATTTCAGCTC TCTCAGAAATGGA-TCTTAAACAAGTCAGTCAGGAATCATCTCATCTAATCATCAGATCATCTCATCTGTCTGATACACC TCTCCCATGCCCTA-AAGGAAAGTAACCTTGCAATAACTAATCACCT-----------TTTTTGC--------------- -CTAGTACAACTTCCCTGTTTCTGTTACCTTCTGTTTATAAAA-TCTCTT-GCCTTGTATAGCTCTTTGGAGTTCCTTTC TATCTGTTAGATTTGATGTTGCCTGATTCATGAATTGCTGAAGAAAGCCAGTAAGATCTTAAAATT--ACTTAATTGAT- ----TTCTTTTTTTAACA---GCAC---TATGGTGTTTTGTTATTGTTATTTGTTTGTGT------TTTGCT-------- --TTTGTTTTTTT-AAGCACATGAGATGTTCTTAAGATTATTGTGATA >Manis_pentadactyla CATGATGC-AACCAAATTTCCAGA-TTTTCTCAC-TTATCATATA-TTTAAAA---ACAC---TGTT-AAAAACAAGACA ACAGGCA---CAAAATGTAGTTGCTTATGCCAAGCCCCATGTCACCAAACCAAGACTT-----------AGTTTTGACTC TCCCAGAAATAGAAATTTAAGCCAGTTAGTCAGGAATCACCAGATC--AGCATTAG-TTGGGTAATCTGTCCGATAAACA CTTGCCATCCACTA-AAGGAAAGTAACATTGCAACAACTGATCTGCTTTAAAATTTATTTTTTGC--------------- -CTACTACATCATCCTTGTTTCTGCTCCCTTCTGCCTACAGAA-TCTCTT-GTCTTGGATAGCTTTTCAGAGTTCCTTTC TGTCTGCTAGATTAGATGCTGCCCATTTCATGAATCACTGAATAAAACCAGTAAGATTTTAAAATTTAATTCAGTTGAA- --TTTTGTTTTTTTAACA---ACAC---TCG--------------------------------------GCT-------- ----GTTTTTTTTAAAGCACATGAGATGTTTTTAAGACTGTTGCAATA >Sus_scrofa CATGATGC-AACCAAATTTCCAGA-TTTTCTTGC-TTCTCAAATA-TTTAAAA---GCAC---TGTT-AAAAACAAGAAA ATGTGCTAAAAAAAATGGAGCCATTTATGCTAAGCCCCATGTCAGCCAACTGACACTT-----AGTTACAGTTTTACCTC TACCAGAAAGGGAATATTGAACCAGTCAATCAGGAGTCATCTGATC--AGCACTAG-TTAGGTCATCTGCCTGATAAACC CCTGCTATCCC---TACAGGAAGTAAACTTGCAAGAGCCAAGCCCCCTC---------TCCTTGCCCCCCACCCTTTTCC TCCAATATAACCTTCCTGTTCGAGCTTCCCTCTGCCTGTAAAA-ACTCTTGCCTTTATATGGTTCTTTGAAGCTCCTTTC TGTGTGCTGGATGGGATGCTGCCTAATTTATGAATCACTGAATATAGCCAATAAGGTCTTAAAAATTCACTCAGTTGAA- -TTTTTTTTTTTTAAAGC---GCAT---TCTGGGTTTGTTTTTTCTTTCCTTT-------------TTTTCT-------- --TTTTTTTTTTT---GCACATGAGATGTTTTTAAGATCATTGCAATA >Tursiops_truncatus CATGATGC-AAACACATTTCCAGA-TTGTCTTAC-TTCTCAAATA-TTTAAAA---GCGC---TATT-AAAAACAAAACA ACAGGCC---CAAAATGGAGTCATTTATGCTAAGCCCGATGTCACCAAACTGAGACTT-----ACTTACAGTTTTGCTTT TCCCAGAAATGGAATATTAAACCACTTGATCAGGAATCATCAG-------CGTTAG-TTAGGTAATCTGCCTGATAAACC CCTGCTATCCC---TAAAGGAAGTAACCTTGCAAGAACCAATCTGCTC----------TTTTCGC--------------- -CCAGTGCAACCTCCCTGTTCCTGCTCCCTTCGGTCTATAAAA-TCTCTTGACTTT-TATAGCTCTCTGAAGCTCCTTTC TGTCTGCTAGATGGGATGCTGCCTGATTCATGAATTGCTGAATAAAGCCAATAACATGTTAAAACTT-ACTCAGTTGAA- --TTTTGCTTTTTTAACA---GCAC---TAT--------------------------------------GGT-------- -----GTTTTTTAAAAGCACGTGAGATGTTTTTAAGATTGTTGTAATA >Equus_caballus CATGATGC-AACCGAATTTTCAGA-TTTTCTCAC-TTCTCATATA-TTTAAAA---GCAC---TGTT-AAAAACAAGACA ACAGGCA---GAAAATGGAGTTGCTTATGCTAAGCTGCACGTCACCAAACTAAGAC-------GATTATAGTTTCGGCTT TCCCAGAAATGGAATCTTAA------------------ATCTGATT--GGCATTAG-TTAGGTAATCTGCCTGATGAACC CATACCATCCTCTATAAGGAAAGTAACCTTTCAATAACCAATCCACTTT---------TTTTGGC--------------- -CTAGTACAAATTCCTTATTCCTGCTCCCTTCTGCCTATAAAA-ATCTCTTGCCTTGTATAGCTCTTCAGAGCTCCTTTT TATCTACTAGATTGGATGCTGCCTGATTTATGAATTGTTGAATAAAGCCAACAAGATCTTAAAATTT-ATTCAGTTGATT TTTTTTTTCTTTTTAACA---GTAC---TAT--------------------------------------GCT------TT TTTTTTTTTTTTTAAAGCACATGAGATGTTCTTAAAATTGTTGCAATA >Ceratotherium_simum CATGATGT-AACCAAATTTTCAGA-TCTTCTCAC-TTCTCATACA-TTTAAAA---GCAC---TGTT-GAAAGCAAGACA ATAGGCC---CAAAATGGAGTCACTTATGCTAAGCCGCACATCACCAAACTGAGAC-------AATTACAGTTTTGGCTT TCCCAGAAATGGAATCTTAAGCCAGTCAATCAGGAATCACCTGATT--AGCATTAG-TTAGGTAATCTACCTGAAAAACC CCTGCCATCCCCTATGAGGAAAGTAACCTTTCGATAACCAATCCGCTTT---------TTTTGAC--------------- -CTAGTACAACTTCCTTGGTCCTCCCCGCTTCTGCCTAT---------CTTGCATTGTATAGCTCTTCAGAGCTCCTTTC TATCTACTAGATTGGATGTGGATTGATTTATGAATTGCTGAATAAAGCCAACAAGATCTTAAAATTT-ACTCAGTTGAA- ----TTTTTTTTTTAACA---GTAC---CAT--------------------------------------GCT-------- -----GTTTTTTCAAAGCACATGAGATATTTTTAAGATTGTTGCAATA >Myotis_myotis TATGATAC-AACCAAATTTCCAGA-TTTTCTCAC-TTCTCATATA-TTTAAAA---GCCC---TTTT-GGAAACAAGACA ACAGACC---CAAAATGGAGTCACTTATGCTAAGCTCTATG--ACCAAACCAAGACTT-----AATTACAGTCTCAGCTC TCCCAGAAATGGATTCTTAAACCAGTTAATCACCAGTCACCTGGGT--AGTA-----TTAGGTAATGTTCCTGATAAGCA CCTGCCATCCCTTA-AAGAAAAGTAACCTTACAATAGCAATCTGTTTTTG--------TTTTTGC--------------- -CTAGTAAATCTTCCTTGTTTCTTCTCTCTTCTGTGTATAAAA-TCTTTT-GCTTTATATAGCTCTTCAGAGATCCTTTC TATCTGCTAGACTGG-TGCTACCCGATTCGTAAATGGCTGAATAAAGCCAATAAGATCTTAAAATTT-ACTCAGGTGAC- ------TTCTTTTTAACA---GCAC---TGT--------------------------------------GCTGGTTTTTG TCTGTTTTGTTTTAAAGCATATGAGATGTTTTAAAGATTGTTACAATA >Rousettus_aegyptiacus TATGATGC-GACCGAATTTCCAAA-TTTTCTTAC-TTCTCATGTA-TTTAAAG---GCAC---TGTT-CAAAACAAGACA ACAGTCC---CCCAATGGAGTCACTTATGCTAAGCCCCATGTTACCAAACTGAGACTT-----AATTACAGTTTCAGTTT TCCAAGAAATGGAATCGTAAACCAGTCAATCACCAAGCACCTGATA--AG----TG-TTAGATAATCTGCCTGATAAACC CTTACCATCCCCTAAAGCAACAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNN---NNNN---NNN--------------------------------------NNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Condylura_cristata TACGATGC-AACCAAATTTCCAGA-TTTTCTCAC-TTCTCATATA-TTTAAAA---GCAA-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------TAT--------------------------------------GCC-------- -----ATTTATTTAAAGCACATGAGATGTTTTTAAGATTGTTGCAAAA >Sorex_araneus CATGATGCAAACCAAGTTTTCAGATTTTTCTCAC-TTCTCATGTA-TTTAAAA---GCAC-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------TAT--------------------------------------GCC-------- -----ATTTATTTAAAGCATAAGAGATATTTTTAAGATTGTTGCAATA >Heterocephalus_glaber CACTACAT-AAGCAAATTTCCAGA-ATTTCTCAC-ATTTCATATA-TTCAAAA---GCAC-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------TAT--------------------------------------ACC-------- -----ATTTACTTAAAGCACATGAGATGTTTTTAAGATTGCTGCAATC Bat34_LTR >MER57LA -------------------------------------------------------------T-GTTAAATTAATTAAACA AGGAGGCCATTAGACTGAGGTGGTTCTAATGCCTTAGCAGCCTACGTAAGCAAACCAAA----ACCTAAGCCTGTAAATG CCTCAAGG---------------------TTAAGAAATCAAAACCTAAG---GACAACCAATCACAAACAGCCAACTAGG CTTTCCCAAATAAGGCAACTGCTTAAGCTATAGCCAATCAAATAATTTCCTTGCTTTGCTTCTGCCTCTTCTCTATAAAA GTCTTTCCCCTAGCTCCTGTCGGTGGAGCGCTCC--TAACCACTTCCTGGTTTGGTGCTGCCTGATTTGAATCGATTTTT GCTCAAATAAACTCTTAAAA-TTTTTAATATGCCTCAGTTT-ATC-TTTTAACACA------------------------ ------------------------------------------------------ >Canis_familiaris ACATGAGGTCTAAGATGCTTCTCCAGTTTGTGAGAATTACTTCAACATCT---GAACT---T-ATTAAATTAATTAAACA ACAAA-----------------------------------CCTATATAAGCAAAGCAAA----CTCTAAGGCTGTAAATG CCTCAAGG---------------------TTATAAAATTGAAACCTAAG---TATAACCTATCCTAAGAAGCAAACTAGG CT--------------------TTAAACTA----CAATC-AATAGTTCCTTTACTTTGCTTCTGCCTTTTCTCTATAAAA ATCTGT-CCCTAGCTGCTCTCCATGGAGTGTTCC--AAACCACTT-----TTTCATGCTG----ATTCAAATCAGTTTTT GTCCAGATAAACTCCTAAAAATTTTTAACATGCCTCAGTTT-ATCTTTTTAAC----------------------AACCT ---CTAGGAGTTATGAACC-TTGCTCTCAAACTCAAGTGTGCAAGAAATGTCTT >Felis_catus ATAAGGGGTTTAAGATGCTTTTCCAGTTTGTGGGAATTGCTTCAACATTT---GACCT---T-GTTAAATTAATTAAACA ACAAA-----------------------------------CCTACATAACCAAAGCAAA----ATCTAAGGCTGTAAATG CCTCAAGG---------------------TTATAAAATTGAAACCTAAGTATAACAACCAATCCCAAACAGCAAACTAGG CT--------------------TTAAGCTGCAGCCAATC-AGTAGTTTCCTTAGTTTGCTTCTGCCTTTTCTCTATAAAA ATCTCT-CTTCTGCTGCTCTCCATGCAGTGCTCCAAAAACCACTTCC-AGTTTGGTGCTGTCCGATTCCAATTAGTTATT ATTCAGATAAACTCCTAAAA-TTTTTCACATGCCTCAGTTTTATC-TTTTAAC----------------------AGCTC ---CTAGGAGTTATGAACC-TTGCTCTCAAGCTCAAATGTGCAAGAAATGTTTT >Manis_javanica ACATTGGGTCTAAGATCATTCTCTAGTTTGTGATAATGTCTTCCATAGTT---GACCT---T-GTTAAATTAATTA---- ACAAAGCCATGAGACTGAGATGGCTCTAAGACCATGGCAGTCTACATAAGCAACTCAAA----ATCTAAGCCTGAAAATG CCTCAAGG---------------------TTCTCAAATTGAAACCCAAG---GAC-ACCAATCACCAACGGCCAACTAAG TT--------------------TTAAGCTACAGCCAATC-AATAATTTCCTTACTTTGCTTCAAATTTTTCTCT--AAAA GTCTCT-GCCTAGCATGTGTGGGTGGAGCACTCC--AATCCATTTCC-AGTTTGGCGTTGCCTGGTTCAAATAGATTTTT GCTCAAAT-------------TTTTTATTATGCCTCAATTT-GTC-CTTCAAC----------------------AGCTC ---CTAGGAGTTATGAACC-TTGCACACAAACTCAAGTATGCAAGAAATATCTT >Sus_scrofa ACCTATGGTCCAAGATGCTTCTCCAGTTTGTGGCAATGACTTCAATATT----GACCT---T-GTTAGATTAATTAAACA AGGAGGCCATTAGACTGAGGTGACTCTAATGCTGTAGCAGCCTACATAAGCAAACCAAA----ATCTAAGACTGTACATG CCCCAAGGTTATAGAGCCTCAACATTCAATTATAAAATTGAAACCTAAG---GACAACCAATC----ACAGCCAACTAGA CT--------------------GTAAGCTTTAACCAATC-AATAATTTCCTTACTCTGCTCCCATCTTTTCTTT------ -------CCCCAGCTCCTATTGGTAGAGTGCTCC--AAGCCACTTCC-ACTTTGGAGCCACCTGATTCAAACTGATTTTT GCTCAGA-AAACTCCTAGAA-TGTTTCACATGCCTCAG---------TTTAAC----------------------AACCT ---CTAGGAGTTCTGAACC-TTGCTTCCAAACTCAGGTCTGCAAGAAATGTCTT >Bos_taurus ACTTGTGGTCTAAGATGCTTCTCCAGTTTGTGGCAATGATTTCAATAGTT---GACCT---T-GTTAAGCTAATTAAACA AGGAGGCCATTAGACTGAGGTGATTCTAATGCTACAGCAGCCTGCACAAGCAAGCCAAA----ATCTAAGCCTG-ACTTG CCTCTAGG---------------------TCATGTAATTGAAATCTAAG---GACATCCAATCACAAACAACCAATTAAG CT--------------------TCAGGCTATAACCAATC-AATAATTTCCTTACTTTGCTTCCACCTTTTCTCT------ -------CCCCAGTTCCTGTTGGTGGAGTGTTCC--AAGCTATTTCC-ACTTTAG----------TTCAAATTGTTATTT GTTCAAATAAACCCCTAAAA-TGTTTAATATGCCTCAGGTT-ATC-TCTTAAC----------------------AACTT ---CCAGGAGTTATGAAAC-TTGCTCCCAAACTCAAGTATGGAAGAAATGTTTT >Myotis_myotis ACCTGGGGTCTCAAATGC-TCTCCAGTTTGTGGCAATGACTTCAATATTC---AATCT---T-GTTAAATTAATTAAACA AGGAGGCCACCAGACTGAGGTGGCTCTAATGCCG-GACAGCCTACACAAGCAAACCAAA----ACCCAAGCCTGTATATG CCTCAAGG---------------------TTATGAAACTGAAACCTAAG---GAC-ATCAATCACAAGCAGCCAACTAGG CT--------------------TTAAGCTATAGCCAATC-AATAATTTCCTTACTTTGCTTCCACTTTTTCTCTTT--AA GTCTC--TTCTATGTCCTGTTTGTGGAGTGCTCC--TAACCGCTTCC-AGTTTGGTGCTGCCTCATTTGAATTGATTTTT GCTCAAATAAACTCCTAAAATTTTTTAACATGCTTCAATTT-ATC-TTTTAAC----------------------AGACT ---TTAGGAGTTATGAACC-TTGTCCTCAAACTTAAGTAAGCAAGAAATGTCTT >Rousettus_aegyptiacus GCATGAGGTCTAAGATGCTTCTCCAGTTTGTGGCAACAACTTTAATATTC---AACCT---T-GTTAAATTAATTAGACA AGGAGGT--TTAGACTGAGGTGGCTCTAATGTCATGGCAGCCTGCATAAGTAAACCAAA----ACCTAAGCCTGTAAATG CCTCAAGG---------------------TTATGAAATTGAAACCTGAG---GACAACCAAGCACAAACAGCCAACTAGG CT--------------------TTAAGCCATAGTCAATC-ACTAACTTCATTGTTTTGCTTCCACCTTCTCTCTATAAAA GTCTC--TCCCAGTTCCTGTCAGTAGAGAACTCC--TAACCACTTCC-AGTTTGACGTTGCCTGATTTGAATTGATTTTT GCTCAAA----CTCCCAAAA-TTTTTAATATGCCTCAATTT-ATCTTTTTAAC----------------------AGACT ---CTAGAAGTTATAAATC-TTGCCCCCAAACTCAAGTAGACAAGAAATGTCTT >Condylura_cristata ACATGTGGTTTAATATACTTC---AGTTTATGGCAG-GACAGCAATACCT---GACCC---TCGTTAAATTAATTAAACA AGGAGGC--------TGAAGTAGTTTT--CTCATAGGTAGCCTAATTAAACAAACTAAAATCTATCTAATCCTGTAAATA CCTGAAAT---------------------TTATGAAAATAAAACCTAAG---GGCAACTCATCACAAACAGCTAGCCTCG TT--------------------TT----CATAACTAATC----AATTTCTTTCTTTT-----TGCCTTTTCTTCATAAAA GTCTCT-TTCCAGCTCCTGTCTAGGGAGCGCTCT--TACTGAAGTTC-ATTTTGGTGC------ATTCAAAATGGTTTTT GCTCAAATAAACACTTAATG-TTTTTAATATGCACCAGTTT-ATCTTTTCCTCTAGGAGTTAATCTTCAGTT---AACTT ---GTAAGAGTTATGAACA-CTGACCCCAAACTAAAGTATGTAAGAAGGCCTCT >Solenodon_paradoxus ACACGTGTTCTAAGATGCTTCTCCAGTTTGTGGCAATGACTTCAATATCT---GACCT---T-GTTATATTAATTAAATA ATGAGACCATTAGACTGAGGTGATTCTAATACCATGGCAGCCTGTGTAAACAAATAGAA----ATCTAAGCCTATAAATG ACTGAAGG---------------------TTATGAAATTAAAACTTAAG---GACAATCAGTCACAAACAGTCAACAATG CT--------------------TTAAGAGATAGTGAATT-AATAATTACCTTACTTTACTTCTGTCTTTTCTCTGTAAAA GTGT---CCCCTGCTCCTATCAATAGAGTACTTC--CAATCACTTAT-GGTTTGGTGCTATCTAATTC-AATAGATTTTT GCCCAAATAAACTTCTACATTTTTTTCATATACCTTGGTTG-ATCTTTTGAC-----------------------AACCT ---CTAGGAGTAATGAATC-TGGCCTTCAAACTCAAGTATGCAGGAAACATCTG >Equus_caballus ACATATGGTCTAAGATGCCTCTCCAGTTTGTGGCAGTGACTTCAATATTT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------GACCT ---CTAGGAGTTATGAACC-TTGCCCCCAAACTCCTGTGTGCAAGAAAAGCCTT >Ceratotherium_simum ACATGTGGTCTAAGATGCTTCTCCAA-TTG-GGCAATGACTTCAGT-TTT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------GACCT ---CCAGGAGTTATAAATC-TCGCCCCCAAAGTCAAGTATGCAAGAAAAGTCTT >Homo_sapiens ACATAGAGTCCAAT-TGCTTCTCCAGCCTGTGGCAATGACTTCTGTACTT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------GACCT ---CTAGGAGATATGACTCATAGCCTTCAAACTCAAACATGCATGATAGATCCT Bat35_LTR >MER21C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------TGTGTAGGAAAAAACAAAC-----------TGT TTTTCTC---TACTCTCACA------------------ACACTTCT-GNCACCAA----ATGTGT----------GGGGT TTTTCCCACACACCAAGCAATTCTCCAGCGGACACCAGCTGGGTGTCCTA--------------------------CAAT TCAATTCAATTCTGACACTATCTACCTGGAGNTAGCGTCAGATCCCACAGGTTAAGGGCTCAGTCCCACAAGACTGCCCC --------------------CACTTCAGACGCCAATCGCAAGT--------CCCAGGTTGTGACCTGTACTTCTGACCGA CC-GGCTATAAATCGGGGGTTCCCA-CGACCCCC---TCCTCGGGTTCGATAATTTGCTAGAGCGGCTCACAGAACTCAG GGAAACACTTTACT-TACGTTTACCGGTTTATTATAAAGGATA----TTACAAAGGATACAGATGAACAGCCAGATGGAA GAGATGCATAGGGC--AAGGTATGTGGGAA---GGGGCGC-GGAG---CTTCCATGCCCTC----TCCGGGCGCGCCACC CTCCCGGCACC-TCCACGTGTTCAGCAACCCGGAAGCTCTCCGAACCCCGTCCTTTNGGGTTTTTATGGAGGCTTCATTA CGTAGGCATGATTGATTANATCATTGGCCATTGGTGATCAACTCAACCTTCAGCCCCTCTCCCCTCCCCGGAG--GTCGG GG-----GTGGGGCTGAAAGTTCCAACCCTCTAATCACATGGTTGGTTCCCCTGGCGACCAGCCCCCATCCTGAGGCTAT CCAGGAGCCCCCAGCCAAGAGTCACCTCATTAGAACAAAAGACGCTCC---------TATCACCCA--GGAAATTCCAAG GGTCTTAGGAGCT-CTGTGTCAGGAACCGGGGTCAAAGACCAAA-----------TATTAGAA--CAAAAGATTCTCCTA GCGCCCCTAT---------------------------------------------------------------------- --------------------------- >Canis_familiaris CCTTAGTAAAATCCTTTGCTTAGTGTACATAC----TAAATATT------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------CAATGGCTTGGATGTTAATA---ACTG---TAT-TAGGAAAGCCTGTGT---TTCTCTTGTAT CTTTCTC-----CTTTCACACAGAACATTTTACTTCTAACACTTCTGGTCACCAAGTGGGTGTGTGTGTGAGGGGGGGGT GGGGTTGA-ACACCAAGCAGTTTTGT----GACACCAGCTACGTATCCTA--------------------------CAGT TT--CTCAGTTCTGACTCTATCCACCTGGAGATAGTGTCA----CCCAAAGTTAAAAGCTCAGCCCCACAAAACTGCCTC --------------------TCCTCCAAATACTAATCACAAGTAGTAGATCCCCAGGTTAC--CCACAATTTTTATCCAA CTTGGCTACAAATCGGAGGTTCCCA-TGAGCTCTTTCCCCTTAGATTCGGTTATTTGCTAA-----TTTACAGAACTTAA GGAAAAAATG-----TAAGTTTGCCAGTTTAT--TAAAGGA-------------------------ATAACCAGAT-GAA GAGATACATAGGAT--GAGGTCTGGGAGGGTTCCAAATGCAGGAG---CTTCT-TCCTGGTAGATTTGGGGTA-GTCATC CTCCTGGTAGG-TAGATGTGTTCACCAGCTGGAAAGCTTTCC--ACTCCATATTACTGGAATTTTAT-GAGGCTTCCTCA CATAAGCATGATCAACA----------------------AACTCCATTTCTAGCCCTTCTCCCGTCTCTAAAGAAGTGGG AA-----GTTGGGCTGAAAATTCCAAGCTTATAATCATG-GCTTGATCTTTCTGGGGACCAGCCCCC-----------AT CCAGGAGCCC---ACCAAGAGTCACCTCATTAGAACAGGAAATGCCCCTAGTGCTCTTATCACTAAGGGGAATTTACAAG GGTTCTAGGAGCC-CTGTGCCAGGCACTTGGGAGGAAGACCAAATAT-------TTATTATAAAGCACAGGATCACAGTC -------------ACTT---AATG--TTAC--TTTTTTCAGGATCATTTGTGT--------TTCTTTCCTGATATTTTTG TTATTA------CTGTGGGGAAAAGAT >Felis_catus CCTTAGTAAAAGCCTTTGTTCAACATAAAGCC----TAAGTATT------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------AAATGGCCCAAGTGTTGATA---ACTG---TAT-TAGGAAAACCTATAG---TTCTCTTGTGT CTTTCTC-----CTTTCACTCAGGACGCCTCACTTCTAACACTTCTGGTCACCAGATGTATGTGTGTGG------GGCGG GTGGTCCA-ACACCAA-----TCTTT----GGCACCAGCCGGGTGTA-----------------------------CAGT TTAACTCAATTCTGACTTTGCCTACCTGGAGGTAATGTCAGATCCCACAGGTTAAGAGCTCAGCCCCACAGAACTGCCCC C-------------------CACTCTAGATACTAATCACAAGTAGTAGATCCCCAGGTTAC--CCACAACGTTTGTCCAA CTTGGCTACAAATCACACGTCCCCA-TGACCGCTTTCCCCTTAGATTTAGTGATTTGCTAGAACAGTTCACGGAACTCAG GGAAACACT------TAAGTTTGCCAGTTTAT--TAAAGGTTA---TGAAAAAAGGATACAGATGAA----------GGG GAGATACATAGGGT--GAGGTCTGGGAGGGTCCCAAATGCAGGAG---CTTCT-TCCTGGTGGATTTGGGGTGTG-CACC CCCCTG-------------------------GAAAGCT-TTCAAACCCCATACTACTAGGATTTTGTGGAGGCTTCCTC- CGTTGGCATGATCAATA----------------------AACTCCATTTCCAGCCCCTTTCCCCTCTCTAAAGAAGTGAG TG-----GTGGGGCTGAAAATTCCAAACTTAGAAGCATG-GCTTGGTCTTTTTGGGGACCAGCCCCC-----------AT CCAGGAGCCC---ACCTAGAATCACCTCATTAGAACAAAAGATGCTTGTAGGGCTCTTATCACTTA--GGAATTTACAGG GGTTTCGGGAGCC-CTGTGCCAGGGACTGGGGAAGAAGACCAAATAGATAT---TTATTATAAATCACAAGATCACAATC -------------ACTT---AATA--TTACTTTTTTTCCAAGACCATTTGTGT--------TTCTTTGCTGATATTTTTG TTTTTAACTCTGCTGTGGGGAAGAAAT >Manis_pentadactyla CCTTAGTAAAGTTCTTTGCTCACCTTACATGCTCAGTAAATTGA------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------TAACTGCT------------------------T-TGGAAAAACCTACAGATCTCTTCCTGTGT CTTTCTCCTTTACTTTTACACAGAATGCTTAACCTTTGATGCTTCTGGTCACCAA----ATGTCT----------GGGGA GATTTCAA-ATACCAAGCAATTCTGA----GACACCAGCTTGTTATCCTATAATTTAGATTTTAACACAATTAAGTCAAT TTAATGCAATTCTGGCTCTATCTACTGGGAGACAGCATCAGTTCTCACTGGTTAAGGACTCAACCCAA--AGACTGCCCC C---------------------ATTCAGATGCCAATCACAAGTACTAGGTCCTGAGCTTAC--CCACAGCTTCTGTCCAA CTTGGCTGCCAATCAGAGGTTTCAG-TGACCTTCAACCCCTTGGATTCAATTATTTGCTAGAACAGCTCACAAAGTTCAA GGAAACACTTAACT-TATATTTGCCAGTTTAT--TAAAGGATA----TTATAAAGGATACAGATGAACAGTCAGAT-GAG GAGATACATAGGGC--AAGGTTTGCGAGTGTCTTGGGTTCAGAAG----CTCTGTCCCTCCTGAATGGAGATG-----TC CTCCTG---------AAGTGTTCACCAGGCTGCAAGTG-TTCGAACCCCATACTGTTGGGATTCTGTGGGGACTTCCTAA TGTAGGCACAATTAGCT-------------------ATTAACT-CATTCCCAGCCCCTCTCCCCTCCCGAGAGAAGTGGG GGATGGGGTGGGGTTGACAGTTACAAAATTCTAATTATG-GCTTGGGTTTTCTAGGGACCAGCCCCCCT----------- -----AGCCT---ACCCATAGTCACCTCATTAGAGCAAAAGGTGTTCCTAGTG---------CTTA--GGGATTTACAAG GGTTTCAGAAGCC-CTATGTCAGGGACTGGGGAAAAAGACCAATTATAAATAT-TTATTATAAATCACAGTAACACAATA -------------AC-----AATA--TTAC--TTTTCCCAAGCACATTTGTAT---------TCTTTACTGATGTTT--G TTTTTCCTATAATAGTAGGACAA-GAG >Sus_scrofa CCTTAGTAAA---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------TAACTCAAATGTTGATA---ACTA---TAG-AGGGGAAACCTGCATTTCTCCTCCTGTAT ATCTCTT--TTACTTTCATGCATAATGCTTCACTTCTGACACTTCTAGTCATTAA----ATGTGG----------GAGGG TTTTTCCA-ATACCAAGCAACTCTGC----GACACCAGCTGGATG----------------------------------- -----ACAGTTCTGACTCTATCTGCCTG--GGTAGCATCAGATCCCACAAGTGAAGGGCACAGTCCCACGGGACAGCCGC CACCCTCACCCCATCCTC--CACTGCACCTGCCAATTGTATGTAGTA-------------------CAACGTCTATCTGA CTGCGCTGTAAATCGGAGGTTTCCA-TAACCTCCTCTCCCTTGAATTTGATTATTTGCTA-AACATCTCACAGAACTCAG GGAAATACTT-ACT-TCCAATTGCCAGTTTAT--CAAAGGATA----TAATATAGGGTGAAGATATACAGCCAGCT-GAA GAGACAAATAAGGT--GAGGTCTGGG-GGGTTCAGGGTGCAAGAGCCACCTCTGTCCCTGTCCATTTGGGATACGTCACC CTCCTGGTATG-TGAATGTGGTCACTAACCTGGAAGTG-TTCAAAGCTCATGCTATTGGGATTTTAAGGAGGCTTCTTCA CATGGACAAGACCAATT-------------------CTTAGCTCCATTTTCAGCCCCTATC---TCTCCAGAGGAGTAGA GG-------GAAGCTGATAATTCCAAGCTTCTAATGATG-GCTTGGGCTTTCTGGGGGCAAGCTTCC-----------AT CCAGGAGCCC---ACCCAGAGTCACCTCATTAGAGCAAAAGATGCTCTTAGT-TTCTTAGCACTTA--GGAATTCACA-G GGTTTCAGGAACC-CCATGTCAGGGACTAGGGATGAAAA-------TACATTTCTTGTTAAAAATCACAATATCACAGTC -------------ACTT---AATA--TTAG--TTTTTCCAGGACCGTTTGTAT--------TTTTTTGCTGATATTTTTG TTTTTTACTATAATTTGGGGAGAAGAT >Tursiops_truncatus CCTTCG-AAAGCCCTGTGCTCCCCGTTCGTGCTCAGCAAATATT------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------AAACGGCTCAAATGTTGATA---ACTG---TAT-TGGAAAAACCTGCATTCCTCCTCTTGTGT CTCTCTT--TTACTTTCACACAGAACACTTCACTTCCGACACTTCTTGTCACCAA----ATGTGT----------GGGAT TTTTCCCA-ATGCCAAGCAATTCCAT----GACACCAGCTGGGTGTCCCA--------------------------CAAT TTAACTCCTTTCTGACTCTGTCTACCTGGAGATAACATCAGATCCCACAGATCAAAGGCTCAGACCCTCAAGACTGTTCC CTCCCAGCCCACAACCATAACACTTCAGCTGCCAAATGCAAGTTGTAGGGCCCCAGGTCAC--CCACCACTTCTCTCTGG CTGGGCTACAAATCACAGATTCCCA-TGACCTCT---CTCTTATATTCAGTTATTTGCTAAAG-AGCTCACAGAACTCAG GGAAACACTTAACTTAACGTTTGCCAGTTTAT--TAGAGGATA----TGATAAAGGAAACAGATGCACAGCCAGAT-GAA GGGATACGTAGGGT--GAGGTCTGGGAGGGCCCAGAGCGCAGGAG---CTTCTGTCCCTGTCTAGTTGGAATGCATCGCC CTCCCCGTGTG-TGAATGTGTTCACCAACCTGAAAGCT-TTCAAACCCCATACTATTGGGATTTTAAGGAGCCTTCCTCA CATGGATAAGACCAATT-------------------TTTAACTCCATTTTCAGCCCCTCTCGTCTCTTCAGAGAGGTGGG GGA----GTGTTGCTGATAATTCCAAGCTTCTAATGATG---------------GGAACCAGATCCC-----------AT TCAGGAG-CC---ACCCAGAGTCACCTGATTAGAACAAAAGATGCTCCTACTGTTCTTAGCACTTA--GGAATTTATACG -GTTTCAGGAGGC-CTCTGTCAGGGACTGGGCATGAAAACCAAAGATATATTTCTTATTATAAATCACAGTGTCACAGTA -------------ACTT--------------------------------------------------------------- --------------------------- >Equus_caballus CCTTAGTAAAGTCCATTGCTCACGGTCCATGCCCAGTAAA---------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------TAGCTCAAGTGTTGATA---ACTC---TAT-TGGAAAAACCTACAGATCTCCTCCTGTGT CTTTCTTCTTTACTTTCACACAGAA-----CACTCCTGACACTTCTGGTCATCAA----ATGTGT----------GGGGG TTTTTTTA-ACACCAAGCAATTCTGC----ACCACCAGCTGGGTGTCCTA--------------------------CAAT TTAATTCAATTCTGA--CTGTCTACCTGGAGACAGCGTCAGATCCCACAGGTTAAGGGCTCAGTCCCACAAGA-TGCCCC C-------------------CACTTCAGATGCCAGTTGCAAGTAGTAGGTCCTCAGGTTAC--CCATAACTTCTGTCTGA CTTGGCTAC---TCGGAGGTTCCCA-TGATCTCCTCCTTCTTGGATTCAGTTATTTGCTAGAACAGCTCACAGAACTCAG GGAAACAC--------ACGTTTGCCAGTTTAT--TAAAGGATA----TGATAAAGGACACAGATGAACAGCCAGAT-GAA GAGATACATGGGGC--GAGGTCTGGGAGGGTCCAAAGTGCAGGAG---CTTCTGTCCTTGTGGATTTGGGGTCTGTCACC CTCCTGGTG---TGGATGTGTTCACCCACAGGAAGGCT-TTTGAACACCATACTATTGGGATTTTCTGGAGGCTTCCTCA CGTAGGCATGATCGATT-------------------GTTAACTCCTTTTCCAGTCGCTTTC--CCCTCTAGAGAAGCGAG GG-----GCAGGGCTGAAAATTCTAAGTGTAAAGTGAGGCTCTTGGGCTTTCTGGGGACCAGCCCCC-----------AT CCAGGAGCTC---ACCCAGATTCACCTCATTAGAACAAAAGATGCTCCTAAGGCTCTTATCACTTA--GGAATTTACAAG AGTTTTAGGAGCC-CTGTGTCAGGAACTGGGGATGAAGACCAAATATATGTTTCTTATTATAAATCACAATATCATAATA -------------ACTT---A--G--TTAC--TTTTTCCAGGACCATTTGTA---------TATTTTGCTGATATTTTTG TTTTTA-CTATACTGTGGGGAGAAGAT >Ceratotherium_simum CCTTAGTAAAGTCCGTTGCTCACCGTACATGCTCAGTAAATATT------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------AAATGGCTCAAGTGTTGATA---ATTG---TAT-TGAAAAAACCTACAGATCTCCTCCTCTGT CTTTCTCTTTTACTTTCACACACAACACTTCACTTCTCACACTTCTGGTCACCAA----ATATGT----------GAGGA GGGCTTCA-ACGCTAAGCAATTCTGC----AACATTAGCAGGGTATCCTA--------------------------CAGT TTAACTCAATTCTGAGTCTATCTGCCTGGAGATAGCGTCAGATCCCGCAGGTTAAGGGCTCAGTCCCACAAGACTGCCGC C-------------------CACCTCAGATGTCGATTGCAAGTTGTAGATCCCCTGGTTAC--CCACAACTTCTGTCT-- -TTGGCTACAAATCGAAGGTTCCCA-TGACTTCCTCCCCCTTGGGTTCGATTATTTGCTAGAACAGCTCACAGAACTCAG GGAAATACT------TACATTTGCCAGTTTAT--TAAAGGATA----TGATGAAGGATACAGATGAACAGCCAGAT-AAA GAGATACATAGGGC--AAGGTCTTGGATGGCCTGGAGCGCAGGGG---CTTCTGTCCTCATGGATTTGGGGTGCGTCACC CTCTTGGTA---TGGATGTGTTCACCCACCTGAAAGCT-TTTGAACCCCATACTATTGGGATTTTATGGAGGCTTCCTCA CATAGGCATGATCAATT-------------------ATTAACTCCTTCTCCAGCTCCTCACCGCTCTCTAGAGAAGTGGG GA-----GTGGGGCTGAAAATTCTAAGCCTCCAATTATG-GCTTGGGCTTTGTGGGCACCAGCCCCC-----------AT CCAGGAG------------------CTCATTAGAATAAAAGATGCTCCTAAGGCTCTTATCACTTA--GGAATTTACAAG GGTTTTAGGAGCC-CTGTGTCAGGAACTGGGGACAAAGACCAAATATATAT---TTATTATAAATCACAATATCGTAATA -------------ACTT---A--G--TTAC--TTTTGCCAGGACCATTTATAT--------TTTTTTGCTGATATTTTTG TTTTTA-CTATACTATAGGGCAAAGAT >Myotis_myotis CCCTACTAAAGTCCTTTGCTCACCATACGTACTCAGTAAATATG------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------AAATGGCTCAAGTATTGATA---ACTG---CAT-TGAAAAGATCTACAG---TTCTCTTGTGT CTTTCTCCTTTACTTTCACACAGAACACTTCATTTCTGAC---TCTAGTCACCAA----ATGTGTGTGTGTGGCAGGGG- --------------AAACAATTCTGC----AGCACCAGCTGGGTGTCCTA--------------------------CAAT TTAACTCAATTCTGACTCT----ACCCAGAGATAGCATCAGATCTCTCTGGTTAAGGGTTCAGTCCCATGAAACTGCCTC CC------------------CATTTCAAATGCCAATCAAAAGTAGTAGGTCCCCAGGGTAT--TCACAACTTTTGTCCTA CTTGGTTACAAGTCAGAGCTTCCCA-TGACATCTCCCCCCTTGAATTTGATTGTTTGCTAGAACAGCTCACAGGACTGAG GGAAACGTT------AACATTTGCCAGTTTAT--TAAAGGATA----GGCTAAAGAATGCAGATGAAGAGCCGGGT-GAA GAGACACACAGGGTGAGAGGTCTAGGAAGATCTCAAGTGCCTG-----CTTCTGCCCCTGTGGAATTGGGATAGGT---- ---------------------------------------TTGGAACTCTGCACTGTTGAGATTTTATGGGAGCTTCCTCA TGCAAGCATGATCAATT--------------------ATACATTCATTTCCAGCTTC-----CCTGTCTAGCGAAGTGAG GG-----GCAGGGGTGAAAATTATAA---CCTAAATA----------------------CAGCCCCATCCCAGGAAACAT TTAGGAGCTC---ACCCAGATTTGAGTCATTCTAGCAAAAGGTGCTCCTTGTGTTCTTATCACGTA--GGAATTTACAAG AGTTTCAGGAGCCCTTTCGTCAGGGACTGGGGACGAAAACCAAATACATATTTCTTACTATAAATCGTAAGTTCAGAATA -------------ACCT---GCTG--TTAC--TTTTTCCAGAACCATTTGTAT--------TTCCTTGCTGATATTTTTG TTTTTA-CTGTGCTATGGGGAGAAGAT >Rousettus_aegyptiacus CCTTAGTAAAGTCCTTTGCTCACCATACATACTTAGTAAATATT------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------AAATGGCTCAGGTGTTGATA---ATTG---TGT-TG-AAAAACCTACAG---TTCATCTATGT CTGTCTT-----CTTTCA-ACAAAACAATAGACTTCTTATACTT-TGGTCACCAA----ATATGT----------CAGAG CTTTTCTA-ACACTAAGCAGTTCTGC----CATACCCACTGGATGTCTTG--------------------------CAAT TTAACTCAGTTCTGACTCTGT----CTGGAGATAGCGTCTCATCTCACAGGTTAGGGGCTCAGTCCCACAAGACTGCACT CCCGGCCCCACCTACCCA--CACTTCAAATGTCAGTCGAAAGTAATAAGTCCCCAGGTTAC-----TCAATTTTGTCTGA CTTCGCTATAAATCAAAGCTTTCCATTGACATCTTCCCCCTTGAATTCAATTGTTTGTTAAAACAGCTCAT-GAGCTCAG GGAAACACATAACT-------TGCCAGTTTTT---AAAGGATGTGATTGATAAAGGGTGCAGATAAACAGCCAGAT-GAA GAGGTACATACACC--TATGTCTGGTTAGGTCCCAAGTGAAGGAG---CGTCTGTCCTCATGGAGTTA-----------C TTCTCAGTACGTTGGTTGTGCTCACCAACCTGAAAGTT-TTCAAACCCTGTCCTATTGAGGTTTTGTGGAGGCTTCCTC- -----------------------------------------TTGCTTTACCAGCCTT-----GCTCTCTAGAGAATTGGG AA-----GAAGGGTCGAAAATTCAAAGCTGCTAATTTTG-GCTTCAGCTTTCTGGGGACCAGCCCCCATCCAGGAACCAT TCAAGAACTC---ACCTAGAGTTGCCTCATTAAAACAAAAGATGCTCCTAGTGCTCTTATCACTTA--GGTATTTACAAG GGTTTAAGGAGCCTTTTTGTCAGGGGCTGGAGACGGAGACCAAATATGTAT---TTCTTATAAATCAC--------AGTA -------------ACTT---AATA--TGAC--TTTTTCCAGGACCATCTGTAG--------TTCTTTGCTGATGTTTTTG TTTTTA-CTATACTGAGGAGAGACGAT >Condylura_cristata CCTCAGTAAAGTCCTTCATTCACCATATGTACTCAGTAAATGTT------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------AAATGGCTCAAGTGGTGATA---ACTT------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------AATA--GTA---CTTTTATATGAACACATGTGT--------ATCTTTGCTGATATTTTTG TTTTTA-CTATGCTGTGTGGAAAAGAT >Uropsilus_gracilis CCTCAGTAAAGTA---CATACACTGTATGTACTCAGTAAATATT------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------AAGTGGCTCAAGTGATGATA---ACTT------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------AGTA--TCA---CTTTTATAGAATGACATGAAT--------GTCTTTGCTGATATTTTTA TTTTTTACTATACTGTGTAGAGAAGAT >Homo_sapiens CATTAGTAAAGTCTTTTGCTCACCATAAATGCTCAATAAATTTTATTTTATTTTATTTTTATTATTTATATTATTTGTTT TTATTTTATATTACTTTATTTATTTTTGGGTCTCACTCTGTCACCCAGGCTGGAGTGCCGTGGCATGATCATAGCTTATT GCAGCCTCAAACTCCTGGCCTCAAGAGATCCTCCTGTTTCAGTCTGTCAAGTAGCCTGGTCTCCCTATATTGAGTAGGCT GTTCTTGAACTCATGGGCTAGGCGATGCACCCACCTCTGCCTTCCAAAGTGCTGGGATTACAGGCATGAACCACCACACC CAGCCTCAGTAAAATTAAAATGGCTGAAGTGTTGATG---ACTT------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------AATGTGTTAC--CTTTTCTAGGGCTATTTGTCTTTTTTTTTTTTTTTGCTGATATTTTTG T-----------------GGAGAAAGT Bat37_LINE >L1MA9_3END -------------------------------------------------------------------------------- ----------------------------GTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATT TCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAAT AAAGCTGGAAAAA------------------------------------------------------------------- ------------ >Equus_caballus TGGC----TGTTAGAATAC----AGTATGAAGCGGAGGGGGAAAACAA-----------------------GGTCAGGG- --ATATTT---AAAGAGTTTTTTAT---------------GATGATGGATA--TTAACTAGACCGATTGTGGTGATCACT TCACAATAGATACAAATATTCAATCATTATGTTGTACACCTGAAACTAAT-----CGTTACGTGCCAATTATATCTCAGA AAAAAAAGAAATG---AAAAAAGTTTTT---TGT------AGAACATCAAGGACAAGGGGATGCACGGCTGCACTAGAAG CTGAAGCATCTG >Ceratotherium_simum TTGC----TGTTAGTATAC----AGTATGAAGTGGAAGTGGAAAATGA----------------------GGGGCAGGGA GGATATTT---AAAGAG-TTTTTAT---------------GGTGATAGATG--TTAACTAGACTGATTGTGGTGATCATT TCACAATACATACAAATATTGAATCATTATGTTGTACACCTGAAGCTAATAA---TGTTACATGCCAATTATATCTC--A AAAAAAAGAAAGA---AAAAACGTTTTT---TGT------AGAACTCCAAGGACGAGGTGATGCACGTCTGGACTAGGA- ---CGGCGTCTG >Myotis_myotis TGGC----TCTTAGTTTAC----AGTATGGTTTGGAAGGGGAAAATGA----------------------AGGGCAGAGA GGATATTT---AGAGTG--TTTTAT---------------GGTGATGGATG--TTGATTAGACATACTGTGGTGATCATT CTGCAATATACACAAATACCAAGTC---ACGTTATACACCTGAAACTAATGTAA-TGTTATAAGTCAATTACATCTC--- ---AAAAAA-------GAAAAACTGTTT---TGC------AGAACTTCAGGGACAAGGCGATGCACAGCTGGACTAGGG- ---AGGTGTGAG >Rousettus_aegyptiacus TGGC----TGTTAGTACAC----AGTACGGACGAGAAGGGTAAACTGA----------------------GGCACAGGGA GGCTATTT---AGAGTG--TTTTAT---------------GGTGATGGATGT-TTAAATAGACTTGTCATGGTGATCGCT TCGAAATATACACAAATATCAAATCACTATGCTGCATACCCAAAGCTAA------TATAATACGTCGATTATATTTCA-- ----------------AGAGAAGTTTTT---TGC------AGAACTTCTGGGACAAGGTGATGCACAGGTGGACCAGGA- ---TGGTGTGAC >Canis_familiaris TGGCCACATGCTA--ATAC----AGCAGGAACTCGAGTGGGAAATGCA-----------------------GGGGAGGGA GGATATTT------------------------------------------------------------------------ -------------------------------------------------------------------------------- ----------------AGAGAT----TT---TCC------AGACCAGCAAGGACAAAGTGATGCCCAGCTGGATTAGGA- ---TGCTGTCAC >Felis_catus TGGTCACATCTTA--ATAC----AGCATGCACTCGAGGGGGAAACGCA-----------------------GGGCGGGAA GGATATTT------------------------------------------------------------------------ -------------------------------------------------------------------------------- ----------------ACAGAG-GTTTT---TGC------AGAGCGTCAAGGACGAGGTGATGCCCAGCTGGATCAGGA- ---GGGCGTCAG >Manis_pentadactyla TGGC----TGTTGGTATAT----GGTATGAACTAGAATGGAAAAATGA----------------------GGGGCAGGGT GGATATTT------------------------------------------------------------------------ -------------------------------------------------------------------------------- ----------------AAAGAG-----------------------TTCAAGGACAAGGTGATGCACAGCTGCACTGGGA- ---TGGTGTCAG >Sus_scrofa TGGC----TGTCAGTATAT----AGTAAGACCCAGAAGAAGAAAGGAG-----------------------GGGCAGGGA GGAGGTTC------------------------------------------------------------------------ -------------------------------------------------------------------------------- ----------------AAAGAGTTTTTC---TGC------AGGACTTTCCTGG-------------AGCTGGACCCGGA- ---TAGGGTCAG >Bos_taurus TGGC----TGTTAGTATACCGTTAGTACAATGTAGATGAAGAAGTGAG-----------------------GGGTAGGAA GTATATTT------------------------------------------------------------------------ -------------------------------------------------------------------------------- ----------------AAAAAGTGTTTC---TGC------AGAACTTCAGGGTCAAAGTGATAGACAGCTGGACTAGGA- ---TGGTGTCAG >Condylura_cristata TGGC-------------AC----AGGAAGTCAGAGATGGGGAAACCAGTGCAGGTTTGGGCACCATCCTGCTGGAGGGGC GGAGACTA------------------------------------------------------------------------ -------------------------------------------------------------------------------- ----------------GATGAT-TTGTC---TAC------AAAG-----AGGAGAGAG--------AACTGGGCTAGGG- ---CAGTGTCGG >Erinaceus_europaeus TGGC----AGTTAGTATAC----AGGATGAACTAGAAGGTGAAAAAAA---------------------ATGGGCTGAGT GGGTATTT------------------------------------------------------------------------ -------------------------------------------------------------------------------- ----------------AAAGAGTTTTTT---TTCCCCCCCAGAAGTTCAAGGACAGCATGACATACAGTAGGACTGGGA- ---TGGCATCAA >Homo_sapiens AGGC----TGTTAGGATAC----ATTAGGAACTGGAAGGAGAAAGGAG-----------------------GGTTAGGCA GGACATTT------------------------------------------------------------------------ -------------------------------------------------------------------------------- ----------------CAAGAGTGTTTT---TGC------AGAATTTCAAGGACAGAGTGATGCACAGCTGGACCAGGA- ---TGGTGTCAA Bat37_LTR >ERV54-EC_LTR -------------------------------------------------------------------TGTT-----AAAA ACAAGACAACAGGCCCAAAATGGAGTCACTTATGCTAAGCCCCACGTCACCAA-ACCGAGACTTAACTTAATTACAGTTT CGGCTCTCCCAGAAATGGAATCTTAAACCAGTCAATCAGGAATCACCTGATCAGCACTAGTTAGGTAATCTGCCTGATAG ACC------------CCTGCCATCC----CCTAAAGGAAAGTAACCTTGCAATAACCAATCCACTTTTTTGCCTAGTATA ACTTCCTTGTTCCTGCTCCCTTCTGCCTATAAAAGTCTTTCATTTTGTACAGCTCCTCGGAGCTCCTTTCTATCTGCTAG ATTGGATGCTGCCCAATTCATGAATCATTGAATAAAGCCAATAAGATCTTTAAAATTTACTCAGTTGAATTTTGT-TTTT T--AACA------------------------------------------------------------------------- ----------- >Canis_familiaris TATAGCTTTACAGATAGTTGTAGTACGATAAGCAGTGTTCAGTGTAATAATGGTGCG---GTGG---TGCT-----GAAA ACAAAACAACAGGCCCAAATGGTAGTCCCTTGTGCTAAACCCCACGTCACCAA-GTCAAGACTTAACTTAATTACCGTGT GGGCTTTCCCAGAAATGAAGCCATAGG-TGGTCAATCAGGAATCCCAAAATAAGCATCAGTTAGGTAACCTGCCTGACAG ACG------------CTTACCATGC----CCTAAAGGAAAGTGGCCTGGTGTTAACCCGTCCCCGTGCGTGTCTAGGAAA ACCCCCTTGTTCC-ATCCCCTTCTCCCTATAAAAGTCTTTCATT----------CCCCAGAGCTCCTTCCTATCAGCT-G GTTGGAGGCCGCCTGATGCATGAATGTTTGAGTAAAGCCAATAGGATCTTCAAAATGTACTGGGTTGAATTTTGT-TGTT ---AACA---GGTG---TTT-GTTGG----------------------TTGTCTTTAT-CCCTCTAAGGAAGAGACATAC TTTGTTCCACA >Felis_catus AATAGCTTTACAGAGAGTTGTAGAAAAGTAAGCAGTACTCAGA-------------A---GTAA---TGCT-----AAAA A--------CAGGCCTAAATTGGAGTCAATTATGTTAAGCCCCATGTCGCCAA-ATCAAG---------ACTTACAGTTT CAGCTCTTCCAGAAATGGAATTATAAGGCAGTTAATCAGGAATCGTGCAATAAGCATTACTTAGGTAATCTGCCTG---- ACC------------CCTGCCATGT----CCTAAAGG-AAGTAACCTTGCAATAACCAACCCATGTTTTGGGCTAGTGTA ACTTTCTTGTTCC-AGGCCCTTCTGCCTATAAAAGTCTTTCATTTTGTGTAATCACTTGGAGCTCGTTTCTGTCTGCTGG TGTGGATGCTGCCTGATGCATGAGTAATCGAAGAAAGCCAATATGATCCTCAAAATGTACTCAATTGA-TTTTGT-TTTT T--AACA---GTTG---TTT-ATTTATTGTCTTA--------------TTGTCTTTAC-CCCTCTAAAGAAGAAATATAT TTTATCTCACA >Manis_javanica TACAG------AGATTTTTGCAGGGCAATAAGCAGCATGCAG-GAGGGAAAGGTGTA---CTAG---TGTT-----AAAA ACACAGCAACAGGCCCAAGATGGAGTCATTTATGCTAAG-CCCATGTCACCAA-ACAGAA-------TTAGTT------T CAGCTGTCCCAGAAATGGAATCTTCAACTCATCAATCAGGAATTGCCTGATCAGCTCTGGTTAGATAACCTGCCTGATAA ACCTCCATACCTCCACCCACCAGTC----CCTAAAGGAAAGTCACTTTGCAAGAGCCAACTTACTTC-TCGTTTAGTGAA ---TCCTTGCTCCTACTTCTTTCTGCCT-TAAATGTCTTTCATTGTGTACAGCTCCTCGGAGCGCCTTTCTGTCTGCTAG ATTGGATGCCACCTGATTTATGAATCACTGGATAAAGCCAATAAGATCTTCAAAATTTACTCAGTTGAATTTTTCGTTTT ---AACT---ATTG---TTT-ATTTA----------------------TGGTCCTTAT-CCCTCTAAAGACAAAATATAA TTTACTCCATA >Sus_scrofa AATAACATTACAGAGGGATGCAGTGCAATAAGCAGTACTCAGCAGAA-AAAGGTGTA---GTAG---TGTT-----AAAA ATAATACAGCAGTCCCCAAGTGGAATCTTTTATGCTAAGCCTCCTACCACCAA-ACCAAG-----ATTCAATCACAGTAT TGGCTCCCCCAGAAATGAATGCTTACACTAATTACTCAGGGGTTCTGTGATCTGTCCTAGGGAGGTAATGTACCTAACAG ACT------------CCTGTCACCC----CCTAAAGGAAAGTAGGCTTGCAATAACTAACCCACTTT-TTGTCTAGAATA ACTTCCCTGTC---ACTCCTTTCTGCCTGTAA--GTCTTTCACCTTGTAC----------AGCTCCTGTCTCTCTGCTAG GTTGTATGCTGCCCAATTCATGGATCATTGATTAAAGCTAATAAGATCTTCAAAATTTACTCAGTTGAATTTTGT-TTTT T--AATA---GAGG---TGG-TTTTTTC--------------------TTACCTTTATCCCCATTTACAAAGAAATGTAT TTTATTTGATA >Bos_taurus AATAATTTTACAGAGAGATTCAGTCCAATAAGCAGTGCTCAGCAGGA-AAAGGGGTA---GCAG---TGTTAGAAAAAAA ACAATACAATTGTTCCC-AATGAAGTCACTTATGCTAAGCTCCACATCACTAAGACTGAGATTTAACTTAATTATGGTTT TGGTTCCCCCAGAAATGAAATCTTACATCAATCAATCAGGAATTTTATGATCAGCTCTAGAGAGGTCATTTGCCTGATAG ACT------------CCTGCCACCT----TTTAAGAGAAAGTAACCTCACAATGACCAACCTACTTT-TTGCCTAGAATA ACCTCCTTGATCTCATTCCT--------------GTCTTTCATTTTGTATAGCTCCTCAAATC----TTCTGTCTATTGG GTTACATGCTGCCCTATTCATGTATCATGGGACAAAGC---TAAGATCATTAAAATTGACTCAATTGAATTTTGT-TTTT A--AATA---TATT---TTT-G--------------------------TTGCCTTTAA-CTTGTTTAAGAAGAAATATAT TTCACTTGATA >Equus_caballus AATAACTTTGCAGAGAGATCCAGCACAAT-AGCAGTACCCAGCAGAC-AAAGGGGTA---TTAC---TATT-----AAAA ACAAGACAGCAGGCCCGCAGAGGAGTCGCTTATGCTAAGTGCCACATCACCAA-ACCAAG-----ATTTAGTTACACTGT TGCCTCTCCCGGAAATGGAATGTTAAACCAGTCAATCAAGAATCCCCTGATCAGCGCTAATCAGGTCATCTGCCTGATAG ACC------------CCTGCCAGCC----CCTAAAGGAAAGTAACCTTGCAATAACCAACACACTTTTTTGTCTAGAGTA ACGTCCTTGTTCCCGCTACCTCCTGCCTATAAAAGTCTTTCATCTTGTACAGCCCCTCGGAGCTCTTTTCTATCTGCTAG AGTGGATGCTGTCCGATTCATGAATCGTGGAATAAAGGCAATAAGATCTTCAAAATTTACTCAGTTGAATTTTGT-TTTT TT-AACA---GTTT---ATTTA--------------------------TTGCCTTTAT-CCTGCTAAAGGGGAAATACAA TTTATTGCATA >Ceratotherium_simum AATAACTTTACAGAGAGTTGCAGTACAATAAGCATCACTCAAGAGAA-AAAGATGTA---GTAC---CATT-----AAAA ACAGGACAACAGGCCCAAAATGGAGTCGCATATGCTAAGCCCCACATCGCCAA-ACCGAG-----ATTTAATTAGAATGT TGCCTCTCCCAGAAATGGAATCTTAAACCAGTCAATCAGAAATCACCTGATCAGCACTAGTTAGGTCATCCACCTGACGG ACC------------CCTG-CATCC----CCTAAAGGAAAGT-ACCCTGCAATAACCAACCTGCTTTTTTGTCTAGTGTA ACTTCCTTTTTCCTACTCCCTCCTGCCTATAAAAGCCTTTCATTTTGTACAGCTCCTCAGAGCTCTTTTCTATCTGCTAG AGTGGATGCTGCCTGATTTATGAATTGTTGAAT-AAGCCAATAAGATCTTCAAAATTTACTCAGTTGAATTTTGT-TTTT TT-AACA---GTTG---TTT-ATTTA----------------------TTGCCTTTAT-CTCGCTAAGGAAGAAATATGT TTTATTCCATA >Myotis_myotis AATAACCTTAAAAAGATTTGCTATACAATAAGCAATACTCAACAGAA-AAGGGTATA---GTGG---TGTT-----AACA ATAAGACACCAGACCCAAAATGGATTTGCTTATGCTAAGCCCCACATTACCAA-ACCAAGACCTAATTTAATTATGGTTT TGGCTCTCCCAGAAATGGAATCTTAAACCAGTCCATCAGGAATCAGCTGATCAGCACTAGTTAGGTCCTCTACCTGACAG ATT------------CCAGCCATCCCCTGCCTACAGGAAAGTGACCTTGCAATAAACAACCTGCTTTTTTGTCTAGTATA AATTCCTTGTTCCCATTCGCTTCTGCATATAAAAGTCTTTCATTTT-TACTGCTCCTCAGAGCTCCTTTCTATCTATTAG GTTGGATGTTGCCTGATTCATGAATCATTGAATAAAGCCTATAAGATCTTCAAAATTTACTCAGTTGAATTTTGT-TGCT TTTAAAA---ATAA---GTGTCTTTA----------------------TTGTCCTTTT-CCCATGAAAAAATAAATATAT TTTATTCTATA >Rousettus_aegyptiacus GGTAACTTTACAGATAATTGTAGTGTGATAAACAGTACTCAACAGAA-AAGGGTGTT---GTGG---TATT-----AAAA ACAAGATAACAAGCCTCAAATAGAATCGCTTATGCGAAGTCCCACGTCATCAA-CCCAAG-----ACTAAATT------- -------------AATGGAATCTTACACCAGTCAAACAGGAATCGCCTCATCAACAATGATTAGACAATCTGCC-GATAG ACC------------CCTGCCATCC----CCTAAAAGAAAGTGACCTTGTAGTAACCACACTGCTTCTTTGTCTAGTATA ACTTCCTTGTTCCCATTCCCTTCTGCCGATCAA-TTCTTTCGTTTGGTACAGCTCCTCACAGCTCCTTCTTATCTGCTCA GCTGGAAGCTGCCTGACTCATGAATCATTGAATAAAGTCAATA-GATCTTCAAAATTTACTCAGCTGAATTTTGT-TTTT T--AACA---GGCT---TTTTTTTTTTTTTTTTA--------------TTGCCTTTAT-CCTGCTAAAGAAGAAATATAT TTTATTCCATA >Condylura_cristata AATCACCTTACACAGTTATTTAGTTCAATAAGCAGTACTCAGCAGAA-AAAGATACA----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------GTAG---TTT-ATTTATTGCCTTTTCTCCTAATAATATTTAATGTTAT-TCTGTTAAAGAAGAAATAGAT TTTGTCCCGCA >Uropsilus_gracilis AATCACTTTACAGAGTTA--CAGTTCAATAAGCAGTACT-AGAAGAAAAAGAATACA----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------GTAT---TTT-ATTTATTCC---TTCTTCCAATAATATTTACTGTTAT-CCTGTTAAAGAAGAAATGGAT TTTATTCCATA >Homo_sapiens AATGACTTCATGGATAGTTGCAGTACAATACATAGTACTCATCAGAA-ATGGGTGTG----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------GCCA---TTT-ACTTTTTAC--TTTCTTCTAATAATGTCAAATGCTAT-CTTGTCAAAGAAGAAATATAT TTTATTCCATA Bat40_LTR >ERV54-EC_LTR -----------------------------------------------------------------TGTTAAAAACAAGAC AACAGGCCCAAAATGGAGTCACTTATGCT-AAGCCCCACGTCACCAAACCGAGACTTAACTTAATTACAGTTTCGGCTCT CCCAGAAATGGAA---TCTTAAACCAGTCAATCAGGAATCACCTGATCAGCACTAGTTAGGTAATCTGCCTGATAGACCC CTGCCATCCCCTAAAGGAAAG----TAACCTTGCAATAACCAATCC----ACTTTTTTGCCTAGTATAACTTCCTTGTTC CTGCTCCCTTCTGCCTATAAAAGTCTTTCATTTTGTACAGCTCCTCGGAGCTCCTTTCTATCTGCTAGATTGGATGCTGC CCAATTC--ATGAATCATTGAATAAAGCCAATAAGATCTTTAAAA-TTTACTCAGTTGAATTTTGTTTTTTAACA----- ------------------------------------------------------------- >Canis_familiaris TTGATAAAGA---TCAATAGTAAGGACATGGTATCCAACACTGT--AGCCATGT---G-CTC---TGCTGAAAACAAGAC AAGAGGCCC--ACTGCAATC-CTTATATGAAAACCCCACGTCCCCGAAGCGAA-----ACTCATTTATGGTTTTGGCTCT TACAGAAATGGAA---TCTTAGACCAGTCAATCATGAACTGCCTGAT-GGGACTAGTTAGGTAACCTGCCTGATAGGCCC CTGCCATCCCCTAAAGGAAAGAAAGTAACTTCACAGTAACTCACCTG---ACTTTTTTCCCTGCTGTAACTTCTTTG--- --GTTCCCTTCTGCCTGTAAG----TCTCGTTTTGTACAACTCCTCGGAGCTTCTTTCTATCTGCTAGATTGGCTGCTGC CTGATTCAAATCAATTTTTGCTCA-----AATAAA--CTTAGAAATTTTAATATGCCT--GTTTATTTCATAGCA---GT TC---TTAGCACTTGAAATATTTACAGTCTAAATTGAGGTG-----TAAGTCTAAATACAC >Ailuropoda_melanoleuca TGGGTAAAGA---TCAATACTAAGGATATGCTGTCCAACACTGT--AGCCATGT---G-CTC---TGCTGAGAACAAGAC AACAGGCCCAAATGGAAATCGCTTATATGAAAGACCCACGTCACCAAACCGAA-----ACTCAATTATGGTTTTGACTCT TACAGAAATGGAA---TCTTACAGCAGTCATTCACG----GCCCGATCAGCACTAGTCT----ATCTGCCTGATAGACCC CTGCCATCCCCTAAAGGAAAGAAAGTAACCTTGCAGGAAACAGCCTC---GTTTTTTTCCCTCCTGTAACTTCCT----- -------------------------------------CAGTTGCT-GGAGCTTCT----ATCTGCTAGGTTGGCTGCTGC CTGATTCAAATCACTTTGTACTCA-----AATAAA--CTTAAAAATCTGAATGTGCCTCAGTTTATCTCATAGCA---AT TC---TTAGCACTTAAAATATTTACAGTCTAAGTTGAGATG-----TAAGTCCAAATACAC >Manis_pentadactyla TTTATAAAGGTCATCAATTCTAAGGCTGTGCTATCCAGTACTGT--AGCCATGT---G-CTC---TCTTAAAAGCAAGAC AAAAGGCCTAAAATGGAGTTGCCTATTTG-AAGTGCCATGTCATCAAGCCAAGATTTAACTGAGCT-CAGTTTCGGCTCT CCCAGAAATGGAC---TCGTACACCAGTCAGTCAGGAACCACCTGATCAACACTA---AGGGAATCTGCCCAATAGACCC CTGCTATTCCCTAAAGGAAAGGAAATAACCTTGCAATAACCAGCCTG---A--TTTTTGCCTAGTATAACTTCCTTATTC CCACTCCCTTTTGCTTATAAAAGTCTTTCCTTTTGTACAGCTCCTTGAAGTTTCT----ATCTGCTATATTGGATGTTAC TTGATTCAAATCAATTT--------------TAAACTCTTAAAGTTTTAAGTATGCTTCAGTTTATCTTGTAACA---AT TC---TTAGCATTTGAAATATGACCAGTCTAAATTGAGATAAGCTATAAGTCCAAATACAC >Sus_scrofa TTGATAA------TCAATTATAAGGATATG-TGTCCTAT-------AGCAGTAT---G-CTG---TGTTAAGAACAAGAC AGCAGGCCCAAAATGGAGTCACTTATGCT-AAGCCCCACATTACCAAACCCAG-----ACAAACTTAAAGTTTTGACTTG CCCAGAAGTGTAA---ACTTAAACCAATCAGTCAAGAATCACCACATCAGCACTAGTTCAATAATCTGCCTGACAGAGCC TTTCCAGTTCCTAGAGGGAAG----TAACCTTGAAATAACCAAACTGTTTTTTTTTTTTTCTAGTATAACTTCCTTGTTT CTGCTCCCTTCTGTCTTTAAAAGTCTTTAGTTTTGCATAACTTCTCTGAGGTCCT----TTGTGCTGTACTTGAAGCTGC CTGATTCAAATTGTTTTTTGCTCA-----AATAAATTCTTAAAAAATTTAACATGTCTTAGTTTATCTTTTA------AT TC---TTAGCACTTGGAATAGGA-----CTAAATTGAGATGTTT--TAAGTCTAAATACAC >Tursiops_truncatus TTGGTAAAGATCATAAATTCTGAGCATGTGCTATCCAATATGAT--AGCCATAT---G-CTC---TGTTAAAATTGAGAC AACAGGCCCAAAATGGAGTCACTTATGCT-AAGCCCCATATAACCAAACCCAGACA--ACGTAATTACAATTTCAGCTTT CCCAGAAATGGAA---TCTTAAACCAGTCAATCAGGAATAGCCTGATCAGCACTAATTAGGTAATCTGCCTCATAGACAC CTGCCATCCCCTAAAGGAAAG----TAACCTTGCAATAACTGACCTG---CTTTTTTTTCCTAGTGTAGCTTCCCTATTT TTGCTCCCTTCTGTCTATAAAAGTTTTTCATTTTGTATAGCTCCTCTGAGCTCCT----TTCTGCTGTACTAGCTGCTGC CCAATTTGGATTGATTTTTGCTCA-----AATAAA--------ATTTTTAATATGCCTCAGTTTATCTTTTA------AT TC---TTAGCATTTGAAACATGA-----CAAAATTGAGATGTATCATAAGTCCAAATACAC >Equus_caballus TTGGTAAATATCACCAATTCTAAAGATGTGCTGTCTAATACTGT--AGTCATGT---G-CTC---TGTTAAAAATAAGAT GACAGGCCCCAAACGGAGCTGTTTATGTT-AAGCCCCACATCACCAAACCAAGACTTAACTTAATTACAGTTTCCACTCT CCCAGAAATAGAA---TCTTAAACCAGTCAAGCAGGAATCACCTGATCAGCACTCGTTAGGTAATTTGTCTGATAGACTC CTGCCATCCCTTAAAGGAAAG----TAACTGTGAAATAACCACCC-----GCTTTCTTGCTTAGCATAACTTCCTTGTTC CTGCTCCCTTCTGCCTATAAAAGTTTCTCATTTTGTACAGCTCCTCAGAGCTCC-----ATCTGCTAGATCGGATGCTAC CTGATTTGAATAGATTTTTGGTCA-----AATAAATTCTTAAAATATTTACTATGCCTCAGTTTACCTTTTAACA----- -C---TTAGCACTTGAAATATGA-----CTAAATTGAGATGTGCTGTAAGTCCAAATACAC >Ceratotherium_simum TTGGTAAATATCATCAATTCTAAGGATGTGCTGTCCAATACTGT--AGCCATGT---G-CTC---CGTTAAAAATAAGAC ---AGGCCCAAATTGGAGCTGCTTATGCT-AAGCCCCACATCACCACACCAAG-----ACTTGGTTACAGTTTCCACTCT CCCAGAAATAGAA---TCTTAAAC----CAATCAGGAATCACCTGATCAGCACTAGTTAGGTAATCTGCCTGATAGACTC CTGCCATCCCCTAAAGGAAAG----TGACCTTGCAATAACCGCCC-----ATTTTTTTGCCTAGTAGAACTTCCTTGTTC C-ACTCCCTTCTGCCTATAAAAGTCTTTCATTTTGTACAGCTCCTCAGAGCTCCTTTCTATCTGCTAGATTGGATGCTGC CCAATTTGAATAGATTTTTGCTCG-----AATAAACTCTTAAAATATTTACTATGCCTCAGTTTATTTTTTAACA---GT TC---TTAGCTCTTGAAATATGA-----CTAAATTGAGATGAGC--TAAGTCCAAATACAC >Myotis_myotis TTGATAAAGATCAT-ACCATTAAGGATATGCTGTCTAATACTGT--AGTTGTGT---G-CTT---TGTT-AAAAC-AGAC AACAGACCCCAAAAGGAGTCACTTATACT-AAGTCCCACATTACCAGACTGAG---------AATTACAGTTTCTGTCCT TCCAGAAATGGAA---TCTTATACCAGTCAACCGGGAATCAACTGATCAGCACTGGTTAAGTAGTCTGCCTGATAGACAC CTGCTACCCCT--AAAGAAAG----TAACCTTACAATAACCAACCC----AATTTTTTGCCTAGTGTAACTTTTTTGATC CCACGCTCTTCTGCCTATAAAAATCTTTCACTTTATACAGCTCCTCAGAGCTCCT----GTTGGCTAGATTGGATGTTGC CTAATTCAAATTTGTTTTTGCTTA-----AATAAACTCTTAAAGTTTTTAATATGCCTCAG-TTATCTTGTAACA---GT TC---TCAGCACTTGAAATATGGCCAGTCTAAATTGAGATGTGCTGTACATCCAAGTGCAC >Rousettus_aegyptiacus CTGATAAAGATCATCAATACCAAAGAAGTACTATCTAATACTGA--AGT-GTGT---G-CTC---TGTT-AAAACAAGAG AACGGGCTTCAAATGGAGTCGCTTATGCT-AAACTTTACATCAGCAAACTGAG-----ACTTAGTTACAGTTTCTGTTCT CCCAGCAATGGAATCTTCTTCCATCAGTCAATCAGGAATCAAATGATCAGCACTAGTTAAGTAATCCCCCTGATAGACCT TTGCCTTCCCTCAAAGGAAAG----AAACTTTGCAATAACCAATCTG---A-TTTTTGGCCTAATATAACTTCCTTGTTC CCACTATCTTCTGCCTATAAAAGTCTTTCACATTGTACAGCTCCTCAGGGGCCCT----ATCTACTAAACTGGATGCTGC TTGATTCAAGTGGATTTCTGCTAG-----AATAAACTTTTAAAAGTTGTAATATGCCTCAATTTACCTTGTAATA---GT TC---TTATCACTTTAAATATGACCAGTCTAAATTGAAATATGCTGTAAATCCAAATACAG >Condylura_cristata CTGATAAACATCATCATTTCTAATGATA-------CAAAACGGT--AGCCATAT---GGCTC------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----TTAGCACTTGAAATATGAGTG--CTAAATTGAGATGTTCTGAGTATCCAAAGGCAC >Sorex_araneus CTAATAAGAATAATCAGTTTTAAGGCTATGCTATCCCAAACTATGAAACTGCAG---G-ATT------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------CAGCACTTGAAATAGGAATCCTCTAAATTGAGCTGTACCAGAAGTCTAAATGCAG >Homo_sapiens CTCATAAAGATTGTTTGTTCTAAGAGTGTGCCATTCAATACTGT--AGCCATGT---GCCTC------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----TTAGCACTTTACATATGA-----CTAAATTGAGATGGGCTGTAAATCCAAATACAC Bat48_LINE >L1MA9_3END -------------------------------------------------------------------------------- --TTTTTCCAGCTTTATTGAGGTAT----AATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTG ATATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTAC---CATTTT TTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAA---ATTTCAAGTATACAATACAGTATTATTAACTATAG TCACCATGCTGTACATTAGATCTCCAGAACTTATTCATCCTGCATAACTGAAACTTTGTACCCTTTGACCAACATCTCCC CATTTCCC------------------------------------------------------------------------ ------------ >Equus_caballus AGATGATATATTGCC-AAAGTTTTTAACTTTAGTTGCAACATTGTATGAT----T---ATAACATTC----TTTTT--T- --------------TATTGAGATATTGAGAATTGACATAT-AACCTTATATTAGTTTCAGGGGTACTACGTAATAATTTG ATATTTGTATACACTATGCAATGATCACCACAATAAGTCTAGTTACC--ATCTATCACTGTACATAGTTACAAAAGCTTT TTTTCTTGTATTGAGACCTTTTAAGATTTACTCTCATAGCAC---CTTTCAAATATGCCATACAGTATTAATAACTATAG TCATCATGCTGTACTTTACATCCTCATGACCTATTTATTTT--ATGACTGGGAGTTCGTACCTTTTGACCACCTTAACCC -----------ATGACATTC--TTTTTT---ATGGAGGATGA-----------TTTTTGTAATTGAAATGGGTTTTATAT GTAAAATCTAGA >Ceratotherium_simum AAATGGTATATTGCC-AAAGTTT-----TTTAGTTGCAACTTTGTATAAT----T---ATAACATTC----TTTTT--T- -------------GAATTGAGATAT----AATTGACATAT-AACTTTATATTAGTTTCAGGTATACTGCATAATAATTTG ATATTTGTATACGCTAGGAAGTGATCACCACAATAAGTCTAGTTACC--ATCTGTCACCATATGTAGTTACAAAAACTTT TTTTCTTGTAATGAGACCTTTTAAGATTTACTCTCTTAGCAA---CTTTCAAATATGCCATACAGTATTATTAGCTGTAA TCACCATGCGGTACATTACATCCTCATGACTTACTTATTTT--ATAACTGGGAGTTTATACCTTTTGACCCCCATGACCT -----------ATAACATTC--TTTTTT---ATGGAGGATGA----------TGTTTTGTAATTGAAATGGGTTTTATTT TAAAAATCTAGA >Myotis_myotis AGATGATATATTGCCAAAAGTTTTTAACTTTAATTGCAACCTTGTATGAT----T---CTAACATTCTTTAAGTTT--T- ----------GTTAAATTGAGGTAT----AATTGACAAGT-AACTTTATATTAGTTTCAGGCATACAACGTAATGATTCA ATATTTGTATATACTACAAAATGATCACCACAGTAAGTCTAGTTAAC--ATCTGTCACCATACATAGTAACAAACATTTT TTT-CTTACGAGGAGA--TTTTAACATTTACTCTCTTAGAAT---TTTTCAAATATGCTACATAGTGTTATTAACCATAG TCA-----CTGTATATAATATCTTCATGACTTATTTACTTT--AAAACTTGGAGTTTGTATCTTTTGACTCCCTTCACCC -----------ATAACATTCTTTTTTTT---ATGGAGGATGA--------TTTTTTTCATAATTGAAACA----TTATTT TTAAAATCTAGA >Rousettus_aegyptiacus AAATGATACATTGCTGAAAGGTTTTAATTTTAGTTATAACATTGTATAAT----T---ATAACATT-------------- ---------------------------------GACAAAT-AACTTTATGTTAGTTTAAGGTGTACAATATAATGATTTG ATAATTGTATACACTATGAAATGCTCACCATAATAAGTCTAGTTACC--ATCTGTCACCATATGTAGTTACAAAAATTTT TTTTCTCATGATGAGACCTTTTAAGATTTACTCTCTTAGCAACAGCTTGCAAATATGTCAAATGGTATTATTAACTATAG TCACCACGCTGTACATTACATCCCCATGACTTATTTATTAT--ATAAGTAGAAGTTTGTGCCTTTTGACC-CCTTCACCC -----------ATAATATT---TTTCTT---ATGACGGATGA--------TTTTTTTAGTAATTTAAGTGGGTTTTATTT TTAAAATCTAGA >Canis_familiaris AAATGATACATTGCCAGAAGTTTTTAATTTTAGTTGCAACATTATATAGT----T---ACAACA-------TTTTT--A- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------ATGGATGATGA-----------GTTTTATAATTGAAAGAGGTTTTACTA TTAAAATCTAGA >Felis_catus AAATGATACATTGCCATAAACTTCTAATTTTCATTGCAACATTATATGAT----T---ATAACATTC----TTTCT--T- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------ATGGAGGTTGA-----------ATTTTATAAGTGAATGGGGTTTTACTA TTAAAATCTAGT >Manis_javanica AAATAATATTTTACTAAAAGTTGTTAATTTTAGTTGCAACATTGTATGAG----T---ATAACA-------TTCTTTAA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------ATGGAGGATGAT----------TTTTTGTAATTGAAATGGGTTTAATTT TTTGAATCTAGA >Sus_scrofa AAATGATATACTGTC-AAGATTTTTAATTTTAATTGCAACATTGCAGGAT----T---GTAACATTCTT--TTTTA--T- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------ATATAAGATGA---------TTATTTTGTAATTGAAATAGATTG---TT TAAAATTATAGA >Bos_taurus AAGTGATATTTTGCC-AAAGTTTTTAATTTTAATTGCAACATTGCATGAT----T---ATAACATTCT---TTTTT--T- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------ATGGAGGATGA---------TTTTTTTGT-ATTGAAATGGGTTTGATTT TTAAATTATACA >Condylura_cristata AAATGACATATTACTGAGAGTTTTTAATATTAGTTGCAAAATTGTACTAT----T---ATAATT-------TTTTC--C- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------ATGGAGGATGA---------GTTAAATGTTGTTAAAAGGGGTTTTATTT TTAAAATCTAGA >Erinaceus_europaeus AAATGCTGTATTG--------------------TTGCAACATTGTATGAT----T---ACAACA--------TTTT--T- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------ATGGAGGATTCTTTTTTTTTTTTTTTAATAATTGACA--------GTTT TAAAAATCTAGA >Homo_sapiens AGATAATATATTGCC-AAAATTCTTGATTTTAGTTGCAACGTTATATGACTGTAT---GTAGCATCG----TTTGT--T- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------ATGGAAGATGA----------TTTTATGTAATTGA-----GTTTTATTT TTAAAATCTGGA Bat52_LINE >L1MA9_3END -------------------------------------------------------------------------------T TTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATATACG TATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTAC---------------- --CATTTTTTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAAATTTCAAGTATACAATACA-GTATTATTAA CTATAGTCACCATGCTGTACATTAGATCTCCAGAACTTATTCATCCTGCATAACTGAAACTTTGTACCCTTTGACCAACA TCTCCCCATTTCCCCCAC------CCCCCAGCCCCTGGCAACCACCATTCTACTCTCTGCTTCTATGAGTTTG------- ---------------ACTTTTTTAGATTCCACATATAAGTGAGATCATGCAGTATTTGTCTTTCTGTGCCTGGCTTATTT CACTTAGCATAATGTCCTCCAGGTTCATCCATGTTGTCACAAATGGCAGGATTTCCT-TCTTTTTTAAGGCTGAATAATA TTCCATT--------------GTGTATAT------------------------------------ATACCACATTTTCTT TATCCATTCATCCGTCGATGGACACTTAGGTTGNTTCCATATCTTGGCTATTGTGAATAATGCTGCAATGAACATGGGAG TGCAGATATCTCTTCGAGATACTGATTTCATTTCCTTTGGATATATACCCAGAAGTGGGATTGCTGGATCATATGGTAGT TCTATTTTTAATTTTTTGAGGAACCTCCATACTGTTTTCCATAATGGCTGTACCAATT-TACATTCCCACCAACAGTGTA CAAGGGTTCCCTTTTCTCCACATCCTCGCCAACACTTGTTATCTTCTGTCTTTTTGAT-AATAGCCATT----------- -------------------------------------------------------------------------------- ------- >Equus_caballus CATACCTACTGCTGGTCATTT-GCGTCTAT---CAACTTTCAAAGTATGT--CCCA---TCTCTTTATTTAGTTT----- TTTTCCAGTTTTATTGAGGAATAATTGACATA-CAACACCGTATAAGTTTAACGTGGGCAGCATGATGGTTTGATTTA-- CATATGTGGTGAAATGATTGCCACAATAGGTTTAGTTAAC--ATCCATCATCTCATATAGATACAGTAAAAAGAAAAG-A AAAAAAATTTTCCTTGTGATGAGAACTCTTAGGATCTACTCTCTTAACAATTTTCCTGTATATCATACAGGGAACGTTAG CTACAGTCCTCATGTTGTACATTACATCCCTAGTACTTATTTATCTT--ATAACTGGTAGTTTGTACCTTGGGACCACCT TC-CTTCAATT-CTCCTTACCTCACCCCCTGTCTCTGGTAACCACAATCCTGATCTCTTTTTCTATGAGTTTGGTGTTTT TTTGTTTTGTTTA------TTTTAGATTCCACATATAAGTGAGATCATACAGTATTTGTCTTTCTCTGTCTGACTTATTT CACTTAGCATAATGCCTTCAAGGTCCATCCATGTCGTCACAAGTGGTAGGATCTCCTAA-TTTTTTATAGCTAAATCATA TTCCATT-TATATAC--------------------------------------------------TTACCACAACTGCTG AATGCATTCATTCATTGACGTACGTGTAGCTTGTTGCCATGTCTTGGCTAGTGTAAACAATGCTGCTATGTGCATACGGG TGCAGATA-------------------TTGTTTTCTTTGGACATATTTCCAGATGTGAAATTGCTGGATCATA-GGTATT TCCTTTTTTAATTTTTTGAGGAAGCTCCATACTGTTTTCCAGAGTGGCTGCACCAATT-TACAGTCCCAATAACTGTGCA CAAAGGTTCCCCGTTTTCCAGACCCACACCAGCATTTGTTATCTCTTGTCTTTTTGATCTA-----------TCACTCTA TCTGAACA---AACTACACAGGTCTTAGCCACCA-------TCA-------TCTTT--TTCTTG---------GAGTAAC AG-AAAT >Ceratotherium_simum CGTCCCTACTGCTTGTCTTTTTCAGTCTAT---CAATTTTCAAAGTAAAT--CCCA---TCTCTTTATTTAATTT----- TTTTCCAGTTTTATTGAGAAATAGTTGACATA-CATCACTGTATAAGTTGACGGTGTATAGCATGATGGTTTGATTTA-- CATATATTGTGAAATGATTGCCACAATAGGTTTAGTTAAC--ATCTGTCACCTCATATAGATACAGTAAAAAGAAAAGAA AAAAAAATTCTCCGTGTGATCAGAACTCTTAGGATCTACTCTCTTAACAGCTTTCCTGTACATCATACA-GCCATGTTAG TTACAGCCATCATGTTGTACATTACATCCCTAGTACTTATTTGTCTT--ATAACTGATAGTTTGTACCTTGAGACCACCT TA-TTTCAATTCCCCCTTCCCTCACCCCGAGCCTCTGGTAACCACAAATCTGATCTC-TTTTCTATGAGTTTGGTGTTTT TTTATTTTGTTTT------TTTTAGATTCCACATATAAGTGAGATCATACAGTAATTTTCTTTCTTTTTCTGACTTATTT CACTTAGCATAATGCCTTCAAGATCCATCCATGTTGTTGCAAATGGTAGGATTTCCCCA-TTTTTTATGGCTGAATAATA TTCCATA-TATATAT----------------------------------------------ACACATACCACAAATTCTC AATGCATTCATTCATCAATGTATATTTAGGTTGTTTCCATTTCCTGGCTAGTGTAAATAATGCTGCTATGAGCATGGAGG TGCAGATATCTTTTCGAGTTAG-TGTTTTGTTTTCTCTGGATATATTCCCAGAAGTGAAATTTCTGGATCATATGGTAGT TCTATTTTTAATTTTTTGAGGAACCTCCACACTGTTTTCCATAGTGGCTGCACCAATT-TACAATCCCACTAATAGTGCA CAAAGTTTCCCTTTTCTCCACATCCACACCTGTATTTGTTATCTCTTGTCTTTTTGATCCA-----------TTGCTTTA TCTAAACT---AAATACTCTAGTCCTAACCACTA-------TCA-------TCTTT--TTCTTG---------GACTGAC AA-AACA >Myotis_myotis CATCCCTACTGCTGTTCATTTTAAATCCAC---CAACTTTTAAAGTATAT--TTCA---CCTATTT-CTCCCCCC----- ACCCCCAGTTTTATTGTGAAATAATTGACATA-CATCAATGTATAAGTTTATGGTATACAACATGATGGTTTGATT---- ----TATTGTGAAATGATTACCATAGTAATTTTAGTTAAT--ATCAGTCATCTCATGTAGATACAGTAAAAAGAAAAG-- --TGAATTTCTTCTTCTAATGGGAACTTTTAGGATCTACTCCCTTAACAAGTTTTCTGTATATTATTCA-GCAGTGTTAA GTATAGTCGGCATGCGGTATGTTACATCCCTAGTATTTATTTATCTT--ATAACTGGAAGTTTGTAACTCCTAACCATTC TC-CTCCAATTCCCTTTCCCTCTACCTCTTGCCTCTGGTAATCAAAAGTCTAATCTCTTTTTCTGTGCAATTGGTGGGGT GTTTTTATGGTGTGTGTTTTTTGTGATTTCTCTTTTAGAT-------TACAGTATTTGTATTTCTCTGTCTGACTTATTT TACTTAGTATAATGTCTTTAAGGTCCATC-ATGATGTTGTAAATGGCAGGATTTCCTCA-TATTCTGTGACTGAATAATA CTTAATAGCATGTG------------------------------------------------CATATA-CACAACCTCTG TATCTATTCATCCACGAATGAACACTTAGGTTGTTTTTACGTCTTGGGTATTACAAATAATGCTGTGATAAACATGGGGG TTCAGATATCTTTTCAAGTTAGTGTTTTTGTTTCCTTTAAATATATTCCCAGAAATAGAATTGCTGGCTCACATATTAGT TCTATTTTTAATTTTTTGAGTAACTTTCATACTATTTTCCCTAGTGGCTGCACCGGTT-TAAATTCCTACCAACAGTGCA CAAGGGCTCCCTTTTCTCCACATCCTAGCCAGAATTTGCTAACTCTTGTC-TTTGGAGCCA-----------TCTTTCCG TCTTAACT---GGATTCTCTAGTTCTAACTACCA-------TCA-------TCTTT--TTCTTT---------GACTGTC AAAAACA >Rousettus_aegyptiacus CATCCCTACTGCTGCTCATTTTCAGTCCAT---CGACTTTCAAAGTGTAT--TCTA---TCTCCTCCCCTGCCCC---CA CCACCCAGTATTGTTGTGGAATAATTGACATA-CATCATTGTATAAGTTGAAGGTATGCAGTATGATGATTTGATTTA-- TATGTATTATGAAATGATTACCACAATAGGTTTAGTTAAC--ATCCATCATCTCATATAGATACAATAAAAACAAAG--A AAAAAATTTCTCCTTTTGATGAGA---CTTAGGATCTACTTCCTTAACAAGTTTCCTATATGTTATAGA-GTGATGTCAA CCATAGTCATCCCAATGTACATCACGTCCCTAGTACTTATTCATAAC---------GAAGCTTGTACGTTGAGACCACCT TC-CTCCAATCCCCCCTCCCTCCACCTCTCACCCCTGGTAACCACAAATCTGATCTCTTTTCCTGTGAGTTTGATGGGAT GTTTCTTTGTCGT--------------------TTTAGGT-------TATAGTATTTATCTTTCTCTGTCTGATTTACTT CACTTAGCATAATGCCTTCAAGGGCCATC---ATTGTTGTAAATGGCAGGATTTCCTCATTTTTTTATGGCTGAATAGTA TTCTGTTGTGTGTATGTGTGCGTGTATATACACACACACACACACACACACACACACACACACACACACCACAACTCCTG TATCCATTTA-----------GCACTTAGTTTGTTTTCATGTCTTGGCTTCTATAAATAA---TTTAATAAGTACAGAGG TGGAGATATCTTTTCAAGTTAGTATTTTTGTTTCCTTTGAATAAATTTCCAGAAGTGGAATTTCTGTGTCATAAAGTAAT TCTGTTTT---CTTTTTAATTAAGTT---TATTGGGTT-AACATTGGTTAATACAATTATATAATTTT------------ CAGGTGTACCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----------NNNNNNNN NNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNN-------NNN-------NNNNNNNNNNNNN---------NNNNNNN NNNNNNN >Canis_familiaris CATGCCTATGTGGAGTCATTT-CAATCCAT---TGACTTTCAAAGTACAC--CCCA------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------TCTCTTTG TCTTAGCT---GAATACCCTTCTCCTGATCACTA-------TCA-------TCTTTTATTCTTG---------GACCACC AA-AAAT >Ailuropoda_melanoleuca CATCCCTACTGGTAGCCATTT-CAATCCAC---TGACTTTCAAAGTATAG--CCCA------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------TCTCTTTA TTTTAACT---AAATACCCTTCTCCTGACCACCA-------TCA-------TCTTT--TTTTTGCGGGGGGGTGGCTACC AA-AAAT >Manis_pentadactyla TGTCCCTGCCCATGGCCATTTGGCATC------CGGCTTTCAAAGTGCCT--CCCA------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------TCTCTTCG TTGTCCCT---GGACACCCTGGCGCTAACCACCA-------TCA-------CCTTT--TTCTT----------GATCAAC AA-AAAT >Sus_scrofa TGTCTCTAGCACTTGTCATTTTCAATCCAT----AACATTAAAAGTGCAT--CCCA------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------TTTCTTTA T-----CT---TAATACCCTAGTCCTGACCACCATCTGCCTTCAAATTTTCTCTTT--TTCTTA---------GACTATC AA-AAAG >Tursiops_truncatus CGTCTGCACCACTGGTCCTTTTCAGTCCTT---CAACTTTCAAAGTATAT--CCCA------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------TCTGTTTA TCTTAACT---GAATACCCTAGTCCTAACCACCAACTCCTTTCACCTTAT-TTTCT--TTCTTG---------GACCACC GA-ATCC >Condylura_cristata CAGCCCTGTTGCTGGACATTTTCTGTTTAT---CAACTTTCATTGGATGT--TCTA------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------TCCCCTTT TCTTAACT---GAACACCCTCATCCTAACACCCA-------CC--------TCTTT--TATTTACCCCT----GAGTGCC AA-GAAA >Sorex_araneus CATGCAGACCACTGGCCATTTTCAACCCCTGCCTAAACTTCAAAGTATAAAGTCCA------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------ACTCTTTA TCTACACT---GAATATCCTCGTCCTTACCACCA-------TTA-------TCTTC---CCTACTA-------GATTGC- ---TAAT >Homo_sapiens CACCTCTACTGCTACTTATTTTGCATCCAT---CAACTTTCAAGCTATAT--CCTG------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------TCTA---- TCTTAATG---GAATACTCTTGTCCTAACCACCA-------TCA-------TGTTT--TCCTTG---------GACTGCC AA-AAAT Bat53_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---TTTTT-----CCAGCTTT---ATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATG TTTTGATATACGTATACATTGTGAAATGATTACCA------------------CAA-----TCAAGCTAATTAAC---AT ATCCATCACCTCACATAGTTACCATTTTTTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAG--------CAAAT TTCAAGTATACAA-TACAGTATTATTAACTATAGTCACCATGCTGTACATTAGATCTCCAGAACTT----ATTCATCCTG CATAACTGAAACTTTGTACCCTTTGACCAACATCTCCCCATTT-----CCCCCACCCCCCAGCCCCTGGCAACCACCATT CTACTCTCTGCTTCTATGAGTTTGAC-------------------TTTTTTAGATTCCACATATAAGTGAGATCATGCAG TATTTGTCTTTCTGTGCCTGGCTTATTTCACTTAGCATAATGTCCTCCAGGTTCATCCATGTTGTCACAAATGGCAGG-- --ATTTCCTTCTTTTTTAAGGCTGAATAATATTCCATTGTGTATATA--------------------------------- -TACCACATTTTCTTTATCCATTCATCCGTCGATGGACACT------TAGGTTGNTTCCATATCTTGGCTATTGTGAATA ATGCTGCAATGAACATGGGAGTGCAGATATCTCTTCGAGATACTGATTTCATTTCCTTTGGATATATACCCAGAAGTGGG ATTGCTGGATCATATGGTAGTTCTATTTTTAATTTTTTGAGGAA--CCTCCATACTGTTTTCCATAATGGCTGTACCAAT TTACATTCCCACCAACA--------------------------------------------------------------- -------- >Myotis_myotis TTTCTG----------GCTCA-TTTAAAACATGTTCA------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------AAGGGTTGTTGTTTTTTTACATAT--TTAT---CTTCATTTTATTC---------------- -----TTTAAAAACTCTTTTT---ATTAAGATATGTTTGAGCTAT-AGCACTGGGTAAGTGTAAGGTGTGCAGCATGTTG ATTTGGTACA--TTTGTGTGGCAGTCTGATCGCTA------------------TTG-----TCATGTTAGCTCAC----A CTTCTCCGTGTCACAGAACTG----TTTCCTTTTTGTGGTGGGAATAATGCAGGTCTGGTCTCTCAG--------CAAGT TT-ATGATTAAGA-CCTAGTCTTGTTGTCTAACATCATTAGACTGGGCACTAGATCTCCAGGACTT--ACTTATCTACTC CTTTGTTACACGTGTGCACCC-TTAAAAACAATCTCTGCTATT---------CCTACTCCTGCCCCTGGGAACCACCATT TTACTCTACGTCT--ACCCGCTTGAC-------------------TTTTTTAGATTCCACATATAAGCGATATCGTACAG TATTTGTCTTT-TCTCTCTGAGTTATCTCACTTAGCGTAATGCCCTCAAAGTTCATCCATGTTGTTGCGAATGGCAGG-- --GTTTCCTTCTTTCTCGTGGGTAAATGATACTC----GTGTATAAA--------------------------------- -----ATGCCATCTTTCTCTGTTCACCTGCTGATGG-CACTTACTAGTAGGTTGTTTTCATGTCTTGGCTATTGTGAATG AAGCTACAGTGAACATG-GAGTGCAGGTATCTCCCCCATATTCTGTTTTCATTTCCTTTGGGT-TATACCCAGAAACAGA ATTGCTGGACCATATGGTAGTTCTATGTTTAATTATTTGAGGAA--TCTCCTCACTGTTTTCCATAGCGAGTGAACCACT TGCCATTC------------CCTCATTTTAGTT---CTATAACATCTCTGTGGAATCAGTATTAGTAATGCAGATGATAA CAGCTGAT >Rousettus_aegyptiacus CTCCTGTCAGACGTGGGTTCG-TTTAAAATATGCTCG------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AAGCTCTCG-------GGCGTCA--TTAT---CCTCACTTTACTT---CCCTCCCCCACCC CCCCCCCCAAAAAAAAAATTT---ATCGAAATACACTTGACGTGT-AACACCGTGTACGTTTGCA------CGCGCGGGG ATCCA--ACAGGTTTCTACTGCAGTACGATCGCCA------------------CCC-----CAGCAGCAGCTCCCGGGGG GTCTACCACCTCCCATAATCATCTTCCCTTTTTTCATGGCGAGAATAATGAAGGTCCAGCC----AG--------TAAGT TTGATGACGGCGG-TACGGTATCGTTGTCTGCAGTCACCGTGCTGTACGCTAGCTCTCCGGGACTTGAACTGACCTACTT ----GTTGCCAGTCGGAATCC-TTG---AATGTCTCTCCTATCCCCCGCCCCGCCACCCTGGCCGCTGGCAACCACCATT TTACTCTCCATTTTCACCAGTTTGGC-----------------TTTTTTTCAGAGTCCTCGCAGAAGCACTATCGTAGGG TGTTTGTCTCTTCCTGTCTG-TCCCCGTTGCTTAGCATAACGCCCTCTAA----ATCCGAAATGT----GATTGCACGAG ATGTTCCCTTCCTCCTCCTGGCTGGATAACACGCACATCTGCATACGTC----------------------TGTATGCAC ATTTCACACCTTCCTTATCCACTCACCTGCTGATGGGCACT------TAGATCGGTTCC-TACCTCGGCTGCTGTGAATG GTGCGGCAGTGAGTATGGGGTTTCTGCTATCTCGTCAATATCCTGTTTTTATTCGCC-------TATACCCGGAGGTGGA ACTGCTAGATCATATGTTAGTTCTACTTTTAACTTTTTTAAGAC--GCCCCATGCTGTCTTCCATTGAGGCCGAACCGCT TCACATTC------------CCTCATTTGATTC---TTATACCATCTCCATGGAAGTGATTTTAGTAATGCGATCGACAA TAGTCAAT >Condylura_cristata TTTCAGTACAGCCTAGCTTCC-TTTGAAAAATGTTCA------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AAGTTTTGT-------GAC-TTT--GAA-------CATCTTATTC---------------- -----ACTGAGGTACAATTTTTTCATTGAGCTCTAATTGCCCTGT-AACATTATGTAAGTTCAAAGTATACAAAGTGCCA ATTTGATCCATTTTTATATTGAAACGTGATTGTCA------------------TTGTAGGATAGCATTAGCTAGC----- -------------------------TGATTATTGTATGAT---AGTAAAGAAAATCTGGCCTCTTAGGATGTGCAGATGT GCAAAGTTTATAA-ATCAGTGTTGTTGTCTGTGATACCCAGACTGTACATTAGCACTTCAGGACTT----GTGTTTACTG ----ATTACAAGTGTGTGTTC-TTA---AACATCTCCTTAATT-----CTCCCACACTCCAACCCCTGCTAACCATCATT CTACTCCCTGCTTTAACAACTTTAGTT----------------TTTTTTTTAGATGTTACAGATAAGTGAGATCACACAG AAGTTGTCTGT----ATCTGATTTACCTCACTTAGCACCATGTCCTCAAGGTCCATTCGTGTTGTTAATAATGGCATG-- --GCTTC--TCTTTTTCGGGGCTGAATAATATTCCACTGTGTGTACAACATGGTATTGTACATACTTATGGAACATCAAT ATGC-GTCTCATCTTTACCCACTCACTCATTGACAAATATT------TAGGTTGTTTTCAGATCTAGGCTGTTTTGAATC ATGTGACAACGGACTTGGGAGTGCCACTATATCTTCCATTTTCTA-TTTCATTTCTGTTGGGAAAACACCCAGAAGTGGG ATGTTTGGGTCCAATGGTGGTTTTATGTTTAATTTTTTGAGGAAACTCTCTATGGTTTTTTCCATAGTGTCTTAACCAAT TTATATTC------------CCTCA-TTTATTT---TTATAATATCCCTCTGGGATGGGTATTAGCAAAGTGGAGAACAA ---CCAAC >Uropsilus_gracilis TTTCTGTCCAGTCTAGGTTCC-TTTGAAACATGTTCA------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AAGTTCTTT-------GACATATATTTAT---CCTCATCTTATTC---------------- -----AATATAATTAATCTGTAACATT-ATGTATAATTAATCTGT-AACATTATGTAAGCTCAAAACTTATGACATGTCG ATTCCATCCATGTATATATTGCAGTGGGATTGTTGACCGCCATGGGATTGTCCTTG-----TAGCACTAGCTAGC---AC CTCCATTACAGCACTTGACACTCATTTCTTTTTTTATTATGGGAATAAAGAAGACTTAGCCTCTTAG--------CATGT CTGGAGTATGTGATTACAACAGTGTAGTCTGTAATCCCCATGCCATGCATCAATACTTCAGGACCT----CTGTTTACTG ----ATTAAAAATGTGTACC--TTA---AACATCTCCTCAATC-----GCCCCACACCCCAACCCCTGGTAACCACCACT CCACTCTCTGTTTTAAGAACTTTAGCTTTTTAACAACTTTAGCTTTTTTTTTTATTCCACATGGGAG----ATCACACAA CCATTGTTTTT----GTCTGATTTATCTCACTGAGC------------------ACCCACATTGTTGATGATGGCAGG-- ---ATTCCTTCTTTTTCATGGCTGAATAATATTCCGTGGTGTGTATACTATAGAACTAAACATACTATTGGAACATTCAG GTATTATCACATCTTTATCAACTCATCCAGTGGCTGATGCT------TGGCTTGGCTTCAGATCTAGGCTATTTTGAAGA AGGCTACCACAAACATGAGAGTACAGCTAGCTCTTCTATTTTCTAAT----TTTTGAGGGGCAACACACCCAAAAGTAGG GCAGTTGGGTCAGCTGGTGGTCCTATTTTTAATTTTCTGAAG-------------TGTCTTCCA-AGTGTCTCAACCAAT TTACATTC------------CCTCA-TTTACTT---TTATCATATTCCTGTGGGATGGGT-TTCGTAATGTGAATGATAA CAGCTCAC >Canis_familiaris TCTCCATCAAACATAGGCTCA-TTTCAA-CACGTTT-------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------GAAG-TCCTT-------GATGTAT--TTAT-------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------CCTCATCTTACTC---TTATAATATCCATACGGAATTGTTATTAGTCATGTGGATGGTAA TAGCTAAT >Felis_catus TTTGCATCAGACATAGGCTCA-TTTCAA-CACGTTTT------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------AAAG-CCCTT-------GGTGTAT--TTAT-------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------CCTCATTTTAT-----TCATAATACCCCTAGGGAATTGTTCTGAGTCATGTAAATGCCAA GAGCTAAT >Phataginus_tricuspis TTTCTGTTGGACATAGGCTCA-TTTAAAGCATGTTT-------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------AAAGTTCCTT-------GGCATAT--TTAT-------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------CCTCATTTTATTC---TGATAATATCCCTCTGGGATCGGCATTAATAATGTGGATAATTA TAACTAAT >Sus_scrofa TCTCTGTCAAACATAGGCTCA-TTTAAAGCATGTTTA------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AAATTCTTT-------GACATAT--TTAT-------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------CCTCATTTGATTC---TTATAATATCCCTGTGGGATTGGTATTAGGAATGTGGATGATAA AAGCTAAT >Bos_taurus TTTCTGTCAAACATAGGCCCATTTTAAAACATGTTTA------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------CAATTCTTT-------GGCATAT--TTAT-------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------CCTCATTTTATTC---TGATAATATCCCTGTGGAATTGGTATTAAGAATGCAGACGATAA TGGCTAAT >Equus_caballus TTTCTGCGAGACGTAAGTTCA-TCTAAAACACATTCA------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AATTTCCTT-------GACATAT--GTAA-------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------CTTCATTTTATTT---TTATGATATCCCCATAGAATGAGTGTTAGTGATGTGGATGATAA TAGCTCAT >Ceratotherium_simum TTTCTGTCAGATATAAGTTCG-TTTAAAACAAGTTCA------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AAGTTCCTT-------GACATAT--GCAT-------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------CCTCAATTTATTC---TTATGATATCCCCATGGAATGGGTATTAGTGAAGTGGATGATAA TAGCTAAT >Homo_sapiens TCTTTGTCAGGCATAGGTTCA-TTTAAAACATGTTCAGCCGGGCGCGGTGGCTTATGCCTGTAATCCCAGCACTTTGGGA GGCCGAGGCGGGCAGATCACAAGGTCAATAGATCGAGACCATCCTGGCTAACATGGTGAAACCCCACCTCTACTAAAAAT ACAAAAAATTAGCCAGGTGCGGTGGTGGGCGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATGGCGTGAAC CTGGGAGGCGGAGCTTGCAGTGAGCTGAGATCCACCCCACTGCACTTCAGCCTGGGTGAGAGTGCGAGACTCCATCTCAA AAAAAAAAAAAATATTCCAAAGTTTGTT-------GACATAT--TCAT-------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------CCTTATTTTATTC---TTAT---ATTTCTATGGAGTTGGTATTAGTCATGTGGATAAGAA TAGCTAAT Bat54_LINE >L1MA9_3END ------------------------------------------------------------------------------TT AATATCCAAAATATATAAGGAACTCAAACAACTCAATAGCAAAAAAACAAAT------------AACCCGATTAAAAAAT GGGCAAAGGACC-TGAATAGACATTTCTCA----AAAGAAGACATACAAATGGCCAACAGGTATATGAAAAGATGCTCAA CATCA-CTAATCATCAGGGAAATGCAAATCAAAACCACAATGAGATATCACCTCACACCTGTTAGAATGGCTATTATCAA AAAGACAGAAGATAACAAGTGTTGGCGAGGATGTGGAGAAAAGGGAACCCTTGTACACTGTTGGTGGGAATGTAAA-TTG GTACAGCCATTATGGAAAACAGTATGGAGGTTCCTCAAAAAATTAAAAATAGAACTACCATATGATCCAG-CAATCCCAC TTCTGGGTATATATCCAAAGGAAATGAAATCAGTATCTCGAAGAGATATCTGCACTCCCATGTTCATTGCAGCATTATTC ACAATAGCCAAGATATGGAANCAACCTAAGTGTCCATCGACGGATGAATGGA-----TAAAGA------------AAATG TG-GTATATATACACAATGGAATATTATTCAGCC-TTAAAAAAGAAGGAAATCCTGCCATTTGTGACAACATGGATGAAC CTGGAGGACATTATGCTAAGTGAAATAAGCCAGGCACAGAAAGACAAATACTGCATGATCTCACTTATATGTGGAATCT- -------------------------------AAAAAAGTCAAACTCATAGAAGCAGAGAGTAGAATGGTGGTTGCCAGGG GC-------TGGGGGGTGGGGGAAATGGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAG-- -----------------TTCTGGAGATCTAATG-------TACAGCATGG---TGACTATAGTTAATAATAC--TGTATT GTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCACCACACACAAAA----AAATGGTAACTATGTGAGGT GATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTA AATATATACAATTTTTATTTGTCAATTATA-------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------CCTCAATAAAGCTGGAAAAA-------------------- -------------------------------------------------------------------------------- ---------- >Canis_familiaris CATTTATATACAATGCACAAGGCATACAAAAATCAATCATTAAT----TAA-----TTCATGC---AAAAGAGTC---TT AGTATACTTAATATATAAAGAACCCATATTACTAATTAGCAAAAAATCAAAC------------AATCTGATTTAAAAAT GGGCAGAAGGTCTTCAATAGATATTTTTTTTA--AAAGAAAACATTCACATGACCAACAGGTACCTGAGAAGATGTTCAA CATCA-CTCATCATCAGGGAAATGCAAATCAAAAGGTCAATGAGGTATCACCTCATGCCTATTAGAATGGCCAAAATCAA CAACACAAGAAACTACAGGTGAGGTTCAGGATATTGAGAAATGGGAACTCTTCTGTGC--ATGGTGGGAATATAAA-TTG CTACAGTCACTATACAAAATAGGATGGAAG-TCCTCAAAACACTACAAGTAAGACCAC---ATGATACAC-TATTTCAAC TTCTGGGTACTTATTTGAAGAAAATGAAAA-ACTAACTCTAAAACAGATATGCGCCTACATGTTCATTACAGTATTATTT ACAATAGCCAAGATGTGGAAACAACCTAAATGTCCACCGACAAAAGAATGAA-----TATGCA------------ATAGA CACACAGACACACGCA---AAATATTATTCTCCCATAAAAAAAGAATGAAATCTTGCCATTT---ACAATGTGTATGAGC CTTGAAGGCACTATGTTAAATA---------AGCCAGAAAAAGGCAAACAGCATATGATCTCACTTATATGTGGGATCT- --------------------------AAAAAACAAAAACTAAACTCATAGATACACAGGATAGACTAGTCTTTGCCAGAG GC------------GAGGAGTAGGGTGGGTAAAGG-AAGTCAAAAGATACAAACTTCCAGTTAT--AGAGTAAGTAAG-- -----------------TCATAAGGATACAGTA-------GACAGTATTG---CAACCATACTTAATAATATTGTGTATC ACACATTTGACAGTTGCTAAGA--GTAAACCTTAAAAGTTCTCATTATACATAAAAT-TAATTCTGTAATTTTGTA--GT GATGG--TTGTTAACTAGACTTATTGTGGTGATCACTTCACAGTATGTATAAATTTGGAATCATTATGTTGTATGCCTGA AACTAGCATGATGTTG-TATGTCAATTATA-------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------CCTCAATTA--------------ACAA---------AAT- AAAATAAAAAATACTTAT---TT----TAG------ATTTACC-CTTCTCAGTTAAT----------CACTATTCAATTT GGGGTTACTC >Felis_catus TCTTCATATACAAAACACAAGGCACACAAAAATCAATCATTAATCCAATAA-----TTCATCC---AAAAGATAC---TT AGTA----AAATATATAAAAAACTCATACCACTTAATAGTCAAAT----------------------------------- ---TAGGTGACC-TGAGTAGATATTTTTTT----AAAGAAGACATTCATATGGCCAACAGGTACATGAAAATGTGTTCAA TATCA-CTAATCCTCAGGGAAATGCAAATCAAAATGACAATGAGGTATCACCCCCTGCATGTTAGAATAGCTAGTATCAA AAGGGCAAGAGACAACAAATGCTGGTGAGGATGTTGAGAACAG-GAATTCTTATGCAC--ATGGTGGGAATGTAAA-TTG GAGCAGTCATTATGGAAAACAGTATGGAAG-TCCTCAAAAAATTGCAAATAGGACAAC---ATGATCCAC-CAATTCTAC TTCTAGGTATTTATTTGAAGAAAATGAAAAAACTAACTCCAAAAGACATATGCACCTCCATGTTCATTATAGCATTATTT ACAATAGCTAAGACATGGATACCACCTGAGTGTCCATCAACAAATAAATGAATATGTTATACACACACACACACAACACA CACACACACACACACACAAGAATATTATTCACCTAT-AAGAAATAATGAAATCTTGCCATTTGCAACAACATGGATGAAT CTTGAGGGAATTATGTTAAATGACATAAGTCAACCAGAAAAAGACAAATACCATATGATCTTATTTATATGTGGGATCTA AAACCAAAGCAAAACAAACAACAACAACAAAAAAAAAACCGAACTC--AGATACAGAAAACAGATTGGTTGTTACTAGAA GCTGGGAATGGTTGTCGGGGTGAAA-----GAAGA-GAGTCAAAGGGTATAAACTTCCAGTTAT--AAAGTGAATAAG-- -----------------TCATGGGGATATAATA-------TACAGCATGG---CAACTATACTTAGTAATAC--TGTATC ACACATTTGAAAATTGCTGAGA--GTAAATCTTAAAAGTTCTCTTCATACACAAAATGTAATTATACAATTTTGTATGGT GATGG--TAGTTACCTAGGCTCACTGTGGTAATCATTTCACAACATTTATAAGTATGAAATCATTATATTGTACACCTGA AACTAATATAACGTTG-TATGTCAAATATA-------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------CCTCAATAA--------------AACA---------GAC- AAAAG---------TTAC---TT----TAG------ATTTACC-CTGTTCAATGAATGACTTCAT--CACAATTTAGTTC TAGGTTACTC >Manis_javanica TTTTC--ACATAAAACACAAGGCATAT-AAAATCCATCATTCA-------------TTCATTT---AAAAGCTAC---TT ATTT-----AAAATGTAA-GCACTCATGCCATTCAATAGCAAAATAAACA--------------AATATGATTAAACAAT GA-CAGAAGATC-TGAATAGACATTTTTCT----AAAGAAAATATACAGATGTCCAACAGACACATGAA---------AA TGTCACCTAATCATCAGGGAACTATAAGTCAAAACCTCAATGAGATATCTCCTCAGAGCTGTCAGGAGGGCTAATATAAA AAAGAGAAGAG---ACAAATGCT--TGAGGATGTGGAAAACAGAGAACCC-TGTGCACTGTTGGTGGGAATGTAAA-TTG GTGCAGCCTCTGTGCAAAGCAGTATGGAGGTTCTTCAAAATACTAAAAATGGAACTACCATATGATCTAGTCAATTCTAT TTCTGGATATTTATTCAAAGAAAGCAAAAATATCAGCTTGAAAAGATACATGCACTCCCACATTCAATGCAGTGCTGTTT ATGATAACCAAGATATGGGAA-AACCTAAGTGTCCATCAACAGATGAACAGG-----TAAAGC------------AAAT- ----TACACTCACACAC-----TATGATTCAACC-TTAAGAAAGAATGAAACCCTGCTATTTGCAACAATGTGGATGGAC CTTGAGGGCATTATGCTAAGTAAAATA----AGATAGAGAAAGACAAATACCTTATAAGCTCACTTACATGCAGAACCT- ------------------------TAAAAAAGAAACAAACAGGCTCTTAGAT--AGAGAACATATTCGTGGTTACCAGGG GCAGGGGGTTGCAGGGTGGGTGAAATGGATGAACA-TAGTCAATAGGTTCAAACTTCCAGTTAT--AATATAAATAAG-- -----------------TCATGGGAATGTAACATACATCATATAGTATGTTATAGTCTATAGTTAATAC-----TGTACT GCATATTT-AAAGTTGCTAAAAGAGTAAGTTTTAAAAGTTCTCATCACAAAGAAAA-----TTCTGTAACTATGTATGGT AATGG--ATGTTAATTAAACATATTAAGCTGATCATTTCATCATAC-TGCACATATTGAATTGT--TATTGTACACCTGA AACTAATATAATGTTG-TATGTCAATTATA-------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------CCTCAATTG--------------AAAAAAAGGAAAAGACA AAAACACAAGTTACTTAT---TT----TAG------ATTTACT-CTGTTCAATAAATGAG-TTATT-CACTAATTAGGTC TGGGATATTC >Myotis_myotis TCTCCATATAAAAAGCATAAGGTATGT-AAAATAATTTATTAATGAATTAA-----TTAGTTC---AAAAGATAC---AT ATCA-----AAAATATAAAGAAGTCTTACCACTCAATAGCAAAAATATCAAAATATTTAATCCAAATATTGTTTAAAAAT GGGCAAAGAATC-TCAGTAGACATTTTTTTTTCCAAAAAAGACATTAAGATGGCCAACAAGTACGTGAAAAGATTCTCAA AATCA-CTCATCATCA--GAAATGCAAACCAAAACCACAATAAGGTACTACCTCACACCTGTTAGAATGGCTATGATTAA -AAGACAAGAAATAATAAATTATAGCAAGGATGTGGAGAAAAGGGAACCTTTGTGCACTGTTGGTGGGATTGTAAATTTA GTGCAGCCACTATGGAAAACAG-------GTTCTTCAAAAAATTAAAAATATAACTACCATGTGATTCAG-CAATTCCAC TTTTTGAAATGTAACCAAAGGAAACAAAGCCACTAACTAAAAATGATATATGCACCTTCATGTTATTTGCAGCATTATTT ACAGTAGGCAAGCTATGGAAACAACCTAAGTGTCCATTGATGGATGAATGGA-----TACACACACACACACAC-ACACA CACACACACACACACACTGGAATAATATTAGGTTATTAAAA---AATGAACTCTTGACATTTAAGAC-ACATTAGTGGAA GACAAAAGCATTGTG-TAAGTGAAATAAGTCAGACAGAGAAAGACAAATACTGTAAGACCTCATTTATATGTGGGATCTA AATAAAACAA------------AACAAACAAACAAAAAACAAGCTCAGAGATACA-AAAAGAGATTGGTCGCTGTAAGAG GT--GATGGTGGGGAATGGGTGAAATGGGCGAAGG-AATTCAACAGGTATAAACTTCTATTTAT--AAGATAAATAGAAG AAATTTATAAGATAAACTTCTATTTATAAGATAAATATATTATAGCAGAGCAACAACTACAGTTAATAATAC--TGTATT GCATATTTGAAAGTTGGTAAGAGAGTAAATATTAAAAATTCTCATCAGAAGAAAAA--AAAATCTATAATTATGTAATGT GACAG--ATGTTAACCAGACTTATGGGGATGATCATTTTGCAAAATATAAAAATACTGAATCAT---GTTGTGCACCTGA AACTAATATAATTTTATTATGTCAACTAGAGGCCTGGTGCACGACATTCGTGTACTTGGGGGCGGGGGTGTCCCTCAGCC CGGCCTGCGCCCTTTCGCAGTCGGGGAGCCCTTGGGGGAGTGGGCCTGCGGGGAGTGGGCCTAAGCCTCAGTCGGACATC CTTAGCTCTGCCATGGAGGCAGGCCACTGTGCTCGCCAGCCATCAGCCTGGCTTTTGCCTGAGCAGTGCTCCCGCTGTGG GAGCACACTGACCACCTGTGTGTTGAGCATCTGCCCCCTGGTAGTCAGTGGTGTCATAGTGACTGGTCATTTTGCTGTTC CATTAACTTGCATATTACCCTTTTATTATATAGGATTACACCTCAGTAA--------------AAAA---------GA-- ---------------TAC---TT----TAG------ATTTACC-CTGTTCAATAAATGAG-TTATT-CATTGTTAAGATC TGGGCTACTC >Rousettus_aegyptiacus TCTCCATGTACAAAGCATAAGGCATAA-AAATTCAATCATTGAT----TAA-----TTAGTTC---AAAAGATGC---CT ATCA----AAATATATGTAAAAGTCATACCACTCAGCAAAAAAAAAAAAA--------------AAAATGATTAAAAAAT GGGCAGAGGATT-TCAATAGACATTTTTTC----AAAGAAGACATTAAGATGGCCGA---GTACATGAAAAGATGTTCAA CATCA-CTAATCATCA-GGAAATGCCAAT--------CAATAAGAGATCATATCACACTTGTTAGAACGGCTATTATCAA AAAGACAAGAGATAACAAATGCTGGCAAACACGTGGAGAAAGGAAAACTCTTGCACA---TTGTTGGAAATGTAAA-TTG GTGCAGGCACTACAGAAAACAGTATGAAGATTCTTCAAAATATTAAAATTGGAACTACCATATAATCCAG-CAATTCCGC TTCTGGGTATTTAGCCAAAGGAAG-AAAAATACTACTGAGAAATGATGCATGCATCCCCATGTTCATTGCAGCATTATTT ATAATAGGTAAGCTATGGAAACAACCTA--TGTCCATCAACAGATGAATGGA-----TAAAGA------------AAATG TA-GTATATACGCACACAGGAATATTATTCAGCCATTTAAAA--ACTGAAATGTTGGCATTTGTGACAACATGGATGAAC CCTGAGGACATTATGCTAAGTGAAATA----CAACAAACAAAGACAAATACTCCATGATCTCACTTACATGTGTAATCTA CAATAAAATAAAAACAA-----AACAAACAAATAAACAA-AAGCTCATAGATACAGAGAAGAGATTGGTGATTGCCAGAG GTGAGAAG----GAGATGAGTGAAATGGGTGAAAG-AATTCAA-AGGTACAAACCTTCAGTTAT--AAAATAAATTAA-- -----------------GTTTGATGGTATAACG-------CACAGCATGG---CAACTATAGCTAATAATAT--TGTGTT GAATATTTGAAAGTTGCTAAGAAGGTAAATCTTAAAAATTCTCATCACAAGAAAAA----TTTCTGTAACTTTGTATGGT GAC----ATGTTTACTAGACTTATTG---TGATCATTTTGCAATATATTCAAATATTTAAT-----TGTTATACACCTGA AATTAATATAATTGTG-TATGTCAATAATA-------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------CGCCAATAA--------------AAAA---------GA-- ---------------TAC---TT-------------ATTTACT-CTGTTTAATATATAANNNNNNNNNNNNNNNNNNNNN NNNNNNNNNN >Sus_scrofa TGTTTACATACTAAGTACAAAGCATAC-AAAATCATTCATTCATCT--TCA-----TTCATTC---AAAAGACAC----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------TTGTTTTAG------ATTTATC-CTGTTCAATAAATG---TTATT-CACTATTTAGATT AAGCCTACTC >Bos_taurus TCTTTGTATACAAAGTACAAAGTATGC-AAACTCAATTGTTACTAC--TAAATCCATTCACTC---AAAATATAC----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------TTGTTTTATCGGTACACTAATC-CTGTTCAATAACTATG-TTATTCCACCATTTAGGTT GAGGCTACTC >Equus_caballus TCTTCACACATAAAGCACAAGGCACAC-AAAATCGATCAATTAT----CCA-----TTCACTC---AAAAGATAC----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------TTATTTTAA------ATTTACC-CTGCTCAATAAATGAG-TTATT-CATTATTTAGGTC TAGGCTACTC >Ceratotherium_simum TCTTCACATACAAAGCACAAGGCATGC-AACATCAATCATTCAT----TCA-----TTTATTC---AAAAGATAC----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------T-ATTTTAG------ATTTACCTCTATTCAGTAAATGAG-TTATT-CACTATTTAGGTC TAGGCTACTC >Condylura_cristata TGTTTACACACAAAGTGCAAAGCATGC-AAGATCAAGCAGTAAT----TGATA---ATTTTTC---AAAGTTTGC----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------TTATTTTAG------ATTACCC-CTGTCTGACAAA--AATTTATT-CATTATTTAAGTC TAAGCTGCCT >Erinaceus_europaeus TTTTAATATATAAAACACAAGACACAT-AAAATCAAT-GTTGA-------------CTAATTC---AAAGATTAT----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------TTAATTTAG------CTCTACC-CTATTTAAGAAATGAG-TTATA-TTCAATTTAGGTC CAGGATATTC >Homo_sapiens CTTTCATATACAAAGCACAAGGCTGAA------CAACTATTAA-------------TTAATTC---AAAAGATAC----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------TTATTTTAG------ATTCTTC-CAGTTTAATAAATGAA-TTATC-CACTTTTTAGGTC TAGGGTATTC Bat72_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTT TTG-------------ATATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACA TAGTTACCAT---------------------------------TTTTTTGTGTGTGGTGAGAACACTTAAGATCTACTCT CTTAGCAAATTTCAAGTATACAATACAGTATTATTAACTATAGTCACCATGCTGTACATTAGATCTCCAGAACTTATTCA TCCTGCATAACTGAAACTTTGTACCCTTTGACCAACATCTCCCCATTTCCCCCACCCCCCA------GCCCCTGGCAACC ACCATTCTACTCTCTGCTTCTATGAGTTTGACTTTTTTAGATTC------------------------------------ ------------------------------------------------- >Equus_caballus AATCAAAAGACTCTAAGATATT---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------GTG-GA-T-TTTTCCAA-TTACCAAAT-------AGAAGTG---TA TTTCCC-------CCCAGCTTTATTGAAAAATAATTGCTATGC-ATCCCTGTATAAGTTTAAGGTGTACAGGATGATGGT TTG---------------GTTTACATATAGTGTGAAATGATTACCACAATAGGTTCAGCTAAC--ATTCATCATCACGTA TAGATACAATAAAAAGCAAAGAAAAAAGGGA------AAAAAATTTTCTCCTTGTGATGATAACCCTTAGGATTTACTCT CGTGGCAACTTTCCTGTACATTGTACAGCAGGGTTAGCCACAGTCATCATGGTAAACGTTACATCCCTAGCACTTATTTA TCTC--ATAACCGGAAGTTTGTCTCTTCTGACCACCTTC-CTCCAATTCCCCCTCCCTGCACCTTCCGCCTCTGGTAATC ACAAGCCTGATTTCTTTTTCTGAGTTTGTTTTCGTT-----------TTTGT------TTT---AAA--------GAGGG CAAATATT---ACAGAAT-TCTCTTGGGAAGAAAATATGTTCTCCTTCA >Ceratotherium_simum AATCAAAAGACTCTAAGATATT---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------GTG-GA-T-TTTTCCAA-TTACCAAAT-------AGAAGTG---TA TTTTTC-------CCCAGTTTCATCGAAAAATAATTGCTGTGC-ATCACTGTATAAGTTTAAGGTGTACAGCATGATAGT TTG---------------ACTTATGTACATTTTGAAATGATTACCACAATAGCTTCAGCTAAC--ATCCATTATCGAGTG TAGATACAATAAAAAGAAAAGAAAAAAGGA-------AAAAAAAATTCTCCTTGTGATGACAGCTCCTAGGATTTAGTTT CTTAGCAACTGTCTTGTATATTGTATGGCACTGGTAGCCACAGTCATCACGTTGTACGTTACGACTCTCGTACTTATTTA TCTT--ATAACTGAAAGTTTGTATCTTCTGACCACCTTC-CTCCAATTCCCCCTCCCCCTCTCCTACACCTCTGGTAATC CCAAGTCTAATTTCTTTTTATGAG-----------G-----------TTTTT------TTT---TAA--------GAGGA AAAATATT---ATAGGAT-TCTGTTAGGAAGAAAATATGTTCTCCTTCA >Myotis_myotis CATCAAAAGATTCTAAGGTATT---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------GTG-GA-TTTTTTTCAATTTATCAAAT-------AGAAGTG---TA TATTTT--------TCAGTTTTATTGACA-ATAATCGGCATAC-ATCACTGTATATATTTAAGGTGTACAACATGATTGT TCA---------------AATCACATATATGGTGAAATGATTACCACAACATGTTCAGCTAAC--ATCCATCTTCTCACA CAGATACAATAGAAGAA--------------------TAAAAAACTTCTCCTTGTGATGAAAATGCTTAGGATTTACTCT CTTAACCACTTTCCTATATATCACACTTCAGTGTTACCTATA---ATCATGTTGTACGTTATATCCCCTGTGCTTATTTA TCTT--ATAACTGGAATTTTGTACCTTTTGACCATCTTC-CTCTATTCCCCTTTCCCCCCACCCTTTGTC---------- -----TATAATTTCTTTTTCTATG------ATTTTT-----------TTTCT------CCT---GAA--------GAAGA CAGATT-----ATAGGAT-TCTCTTTGGAAGAAAATATGCTCTCTTTTA >Rousettus_aegyptiacus CGTCAAAAGACTCTAAAATATT---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------ATG-GA-T-TTTTCCAATTTATCAAAT-------AGAAGTG---TA TTTCTG--------AGAGTTTTATGAAAAAATAATTGACATAC-ATCATTGTATAAGTTTAAGGCACACAACATGATAGT TTATGTTTGTACATGATGAATTATAAATCTTGTGAAATGATTACCACAATAGGTTCAGTTAAC--ATCTATCTTCTCATA TAAATACAATAAAAAGAAAAGAAGAAAAGAAAAACTGAAAAGAAATTCTCCTTCTGATGATAACTCTTAGGATTTACTCT TTTAGCAATTTTCCCATACATCAAAC-AAATTGTTAGCCATAGTCATCACGTTGTACGTTATATTTCTAGTACTTATTTA TTTT--GTAACTGGAAGTTTGTACCTTTGGATCATCTTC-CTCTACTTCCCCCTCTTCTCACCCTCTGCCTCTGCTAACC GCAAGTCTGACCTCTTTTTCTATGANNNNNNNNNNN-----------NNNNN------NNN---NNN--------NNNNN NNNNNN-----NNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Canis_familiaris AATC-AAAGACTCTAAGATATT---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------GTACTTTTTTTTTTCAATTTGCCAAAC-------AGAAGCA----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------TTTTT------TTT---AAA----------GGG CAAATACT---ATAGGAT-TTTCTTTAGAAGGAAATATGTTCTCCTTCA >Felis_catus AATC-GAAGACTCTGAGATATT---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------GTG-TA-T-TTTTCCAGTTTACCAAAC-------AGAAGTA----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------CATTT-----TTTT---AAA--------AAGGG CAAATATT---ATCAGATGTTTCTTTT--GAAAAATACGTTCTCCTTCA >Manis_javanica AACC-ACAGACTCTAAGGTATT---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------GTG-GA-T-TTTTCCAATTTACCAAAT-------AAAAGTG----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------TACCT-----TTTT---AAA-------AGAGGA CAAAC------ATAGGAT-TCACTTTGGAAGAGGATATGTTCTCCTTCA >Sus_scrofa AATCAAAAGATTGCAAATCATT---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------GTG-CA-T-TTCCCCAATTTACCAAAT-------TGAGGAA----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------TATTT-------TT---AAA-----AAAGAGGA TAAGTAGT---ATAAGAT-TCTCTCTGGAAGAATGTATGTTCTCCTGCA >Tursiops_truncatus AATTAAAAGACTGTAAGATACT---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------TTG-CA-T-TTTTCCAAGTTACCA-AT-------TGAAATG----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------TATTT------TTT---AAA-----AAAGAGGA TAAATAGT---ATAAAAT-TCTCTTTAGAAGAAAACACGTTCTCCTTCA >Condylura_cristata AATCCAAAGATTCT--GATATT---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------GTG-GA---TTTCCCAATTTA----AT----------AGAA----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------TACTT---TTTATT---AAA-------CAAGAA CAGATATT---ACAGAAT-TTTCTTTAGGAGAAAGTGTGTT-----TCA >Solenodon_paradoxus AATAAAAATACTCT--AAGAAG---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------CTG-TAGTGTTTTCCAGTTAACCA-----------GAAGTG----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------TATTT--TCCTTTT---GAA--------GAGGA CAAGTATT---ACAGAAT-ACACTGTGAGAAAATATAT--TCTCCTTCA >Homo_sapiens AACCAAAAGACTCTAAGATAATTATTTTATTTTATTAGGGTATAATTGACAAAAAATTTGTACATATTTAGTTTCATAAT ATGATGTTTTGATATGTGTACACATTGTGAAATGCTTAAATGAAGCTAATTAACATGCATCACCTCTCATACTTATTTTT TGTTGTGAGAACATTTAAGATCTCTCTCAGCAATTTTCAAGTATATAATACATGATTATTAACTATAGTCACCATATTGT ACAATAGATCTCTTGAACTTATTTCTCCTGTCTAACTGAAATTTTTATCCTTTGATCGAAGCTTGTCTTTCCCCCACTTC CTCCTCCCTCAGCCCTTGGTAACTACCATTCTACTCTCTGCATCTATAAGTTTGACTTTTTTAGATTTTAGGTATATGTG AGATCGTGAAATACTTTAAAGACTCTAAGACAGTGTA-GA-T-TATTCTAATTTACCATATATATATGGTAAATA----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------TATATATATATTTT---ACAATCAGGATAAGAG TAAGTTTTTTCACAATGT-ACTCTTTGGGAGAAAATATGTTCTCTTTCA Bat78_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------AAAAAATGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATAC GTA----------------------------TATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGT CAATTATACCTCAATAAAGCTGGAAAAA---------------------------------------------------- -------------------------------- >Canis_familiaris TCTAAGTGCAGTGGAGAACCCTTAATGAG--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------TTGTAAGCAG------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------GAGAATGG--------TCTTATGTGC-TGTTTT---AAGGAT TATA--------------ACTATGCAAGGTGATGG--ATGTTAACTGAACATACTTTGCTAATCATTTCACAATATATAC AC-----------------------------CACCACGTCAGTATGTTGTGCACCTAGAACAAACACAA-CACTACATGT CAAGCATAGCTCAACATAC--AGA-------AAACAACCCG---TCCAAGGCTGGAGTGGGAAGAGAAATGAAAACGGGG GG-CGGAGGCAGGACCAGCTGGGGAGCGGGGC >Felis_catus TCCAAGTGCAGTGGAGAACCACTAACGGG-----TTTTTTTTTTTTAATTTTTTTTTTTTAACGTTTATTTATTTTTGGA CAGAGAGAGACAGAGCATGAACGGGGGAGGGGCAGAGAGAGAGGGAGACACAGAATCGGAAACAGGCTCCAGGCTCCGAG CCATCAGCCCAGAGCCCGACGCGGGGCTCGAACTCACGGACCGCGAGATCGTGACCTGGCTGAAGTCGGACGCCCAACCG ACTGCGCCACCCAGGCGCCCCAACCACTAACGGGTTTTAAGCAG------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------GAGAATGGTGCGG---TCTTATTTGC-TGTTTT---AAAGAT TATA--------------ACTATGCCAGGTGATGG--ATGTTAACTAAACATATTTTGC---TCATCTCACAATATGTAT GCAT--------------------------CTATCTCATCAGTACGTTGTGTACCTGGAACGGATACTG------TATGT CAATTACAGCTCGACG-----AGA-------AAACAATCCA---CCTGAGGCCAGAGTGGGAAGAGAGATG--------- ---------TAA-------TGCAGCAGGGGGC >Manis_javanica TCTAAGAGCAATGGAGA--------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------GTGG---TCTTATTTGC-TGTTTA---AAAGAT TGTA--------------ACTATGTGTGGTGAAGG--ATGTTAACTAAACTTATTCTACT-------------------- -------------------------------------------------------------------------------- -------------------------------------TCCA---TCTGAGGCCGGAGTAGGAGGGCTGA----GTTGGGA AG-CTGCTGAAA-------TGAGGCAAGGGAT >Myotis_myotis TCTAAGTGCAAGGGAGAGCCATGAACAAG--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------TTTTAAGCAG------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------ATGAATGGTGTGG---ACTTATTTCG-TGTTTA---AAAGAT TGTA--------------ACTCTGTGTGGCGATGG--ATG-AAACTAAGCTTATTCTGCTAATCATTTTGCCATCTATAC ATAT---------------------------TAGCAAATCATTATGTTGGGCACCTAAAACTAATATAA-TGC--CATGT CAGTTATAGCTCAACAAAG--AAAA------CAAAGTTCCA---TTTGAGGCCAGAGTGGGAGGAGAGATG-AGTTGGGG AG-CTGCTGAAATGAGAAGTGAGGTAGGGGCT >Rousettus_aegyptiacus TCTAAGTACAGTGGAGAACTAATAATGGG--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------TTTTAAGCAG------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------GAAAATGGTGTGG---TCTCATTTGC-TGTTTA---AAAGAT TGTA--------------AGTATATGTGGTGAGGG--ATGTTAACTAAACTTATT---CTAATCATTTTGCCATATATAT ATATATATATATATATATATATATATATATATGCCAAATCATTATGTTATGCATTGAAAATGAATACAA-TGCTACATGT CAATTATAACTCAATAAAG--AAAAA-----ACAAACACTG---TCTGAGGCCAGAGTGGGAAGAGAGATG-AGTTAGGG GG-TTGCCAAAA-------TGAGGTAGGGGCA >Sus_scrofa -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------TTTGGCAC------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------CAGGGCGGCAGGG---ACCTAGCTGCTTGTGTG---AAAG-C TGCA---------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TCTGAGGC---AGAGGGAGGAGAGG----------- ---CTTCAGGAA-------CGAGGAAGGGTAC >Tursiops_truncatus -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------TGTCAAGCAC------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------AGTGATGGCAGG----TCTGATCTGCTTGTGTG---AAAG-C TCCA---------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TCCGAGGCC------GCGAGGGAGGCG---TCTGGA GG-CTGCGGGAA-------CGAGGAGGGGGCC >Equus_caballus TCTAAGTGCGGTGGAGAACCA-TAAGGGG--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------TTTTAAGTGG------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------GAGAATGGCATGC---TCTTATCTG-TTGTTTA---AAAG-C TCCG---------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TCTGAGGCCAGAGTGGGAGGGGAGGGG-AGCTGGGA GC-CTGCTGAAA-------TGAGATAGGGGCT >Ceratotherium_simum TCCAAGTGCAACGGAGAACCA-TAAAGAG--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------TTTTAAGCAA------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------GAGAATGGCATGGTCTTCTTATTTG-TTGTTTA---AAAG-C TCCG---------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TCTGAGGCCAGCGTGGGAGGGGAGATG-AGTTGGGA GC-CTGCTGAAA-------TGAGGTGGGG-CT >Condylura_cristata CCTAAGTTCAGTGGAGAGCCATTAATGAG--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------TTTTAAGCAG------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------GAGAATGATAAAA---TCTTACTTGCTTGTTTA---AA-G-C TCCA---------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TCTGATGCCAGGGT--GAAGGGAGGGGCAATTGGGA GG-CAGCTGAAA-------AGAGGAAGGGACT >Erinaceus_europaeus TGTAAATACAATCGAGGACTAATCAGGAA--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------AGTGACATTGGCTTTTAAAAATGTCCTCTATTAATTAATTA ATTAGTATATTGAACAAAGACAGAAATTGAGAGGGAAGTAAGAAATAAAAGAGGGAGAAAGAGAGACACATACAGGCCTG CTTCCCTGCTTCTGAAGCCTCCTTCTCCCTGCAGGTAAAATGAGGACTGGAGACTTGAATCTGGGCCCTTGCACATGGGG ACATGTTTGCTCAGTTGGGTGTACCAGCTTCAGATCCTGAGAATGACAAGG---TCTTATTTTCTTGTGTA---AAAC-C TC-A---------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TCTGAGATGAAACCAGAAAGAGAAGTG--AGTGGGA AG-CTGCTAACA-------TGAGGAGGGGACT >Homo_sapiens TCTAAGTAGAGTGGAGAACCATTAAGAGA--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------CTTTAAGTAG------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------GAGAATAGAATGG---CCTAATTTGCTTGTTTG---AAAG-A TCCA---------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TCTGA-GCCTGAGTAGCAGGAGGGAGCCGCCTAAGG GGTCTGCAGAAG-------TG-GGTTGGAGCT Bat84_LINE >L1MA9_3END -------------------------------------------------------------------------------- ---------TCAAAGGGTACA---------------AAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGT --ACAGCATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTT----------------------------- -----------GCTAAGAGAGTAGA------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------TCTTAA GTGTTCTCACCACACACA-AAAAAATGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTT CACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATA AAGCTGGAAAAA-------------------------------------------------------------------- ----------------------- >Myotis_myotis AGACTTAA-A----TGATAATAAACATA-TTTTTATAATGCTGGAAAGTTGTCAA-AATGTTTATT---AACAAAATCAT CCAAGG-----------TACA---------------ATCTTCAAGTCAT--A----TGATAAGTCTTGGGGATATAATAC --ACAGCATGGTAACTGCAGTTAATAATATTGTATTGTATAC-TGAAATTT----------------------------- -----------TCTAAGATAGTTGA------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------TCTTAA AATTTCTCATCACAAGGAGGAAAATTTGTGACTATGTATGGTGATGG--ATGTTAACTAGACTAATTATGGTAATCATAC CCTAATGTGAACAAATATCAAATCATTATGCTGTATACCCAAAACTAATGTCATGT---TATGTCAGTTATATCTCAATT TTTTAAAA-------------AAAATAATCATCC-------AATG--------------ACTCTCCTTTGACAACAAAG- --AACTTGAATCTCAGCAAATTG >Rousettus_aegyptiacus AACCATTG-AT-GCTAATAGTAAACACATTTTTTAGAATGCTGGGAAGTTTACAA-AATGTTTATT---GACAAAATTAT CTAAGG-----------TACA---------------ATCTTCTAGTTAT--AAAAGGAATAAGTCATGGGGATATAATAT AAAAAGCATGGTGACTGTAAGTAATAATACTGTATAT------TGAAATTT----------------------------- -----------GCTAAGA--GCAAG------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------GCCTTA AATTTCTTATCATAAGAA--AAAAATCATGACTATGT--GGTAATGG--ATGTTACTTAGACTTATC-TGAGGATAATTT CTCAATATATACAAATATCAAGTCATTGTGTTGTACACCTGAAACCAATGTTATAT-------GTCGTTATACCTCAATT TAAAAAATTA-----------AAAATAATCATCT-------GATG---CAAGAAGTATGACTCCCCTTTGATTGCAAAG- --AACTTGAGTCTCAGCTAATTG >Condylura_cristata AACACATG-GT-GGTAAAAATAAACA---TGTGTACAAGGCTGGGAATTTCACCA-AATGGTTTTT---GAAAGAATTAT CTAATT-----------TACAGTTTGATGTTAAGCAAACTTCCAGTTGC--AAAATCATTAAGTC---GGCATGTCATAT --GCAACAAAATGCCTGCCTGCAAAAATACAGCACAGTGTATGTGAATTTTTAAAGATTAATTTATTTATGCTTACAGAA CTGGGGTACAGGCCAGAGGTGCAGGGGCGGTGAGAGAATTCACCAGAGTCAGAGTGGGGAGCAAAACAGGCCGACTGACG AAGTACACTGCTGAGGGGAGCAGCAGGCAGGTCAGGAGAGGTCTGCCGCACCATGTGGGTCACCTCAGGGCGGGAATCGA ACTCATGCTGAAGTGACTTTAGCTTCTTAGTGCTGCGTTTACCCGATGTGGCATCAGGGAGGGCCCTGAGTCCCTCTTTA ATATTTCCATCGTAAGAA---AAAAATGTAAGTATGCATGTTGAG----CTGTTAACTAAATTTATAGCGATGATCATTG CACAATATATGCAAATGTAGAATCA--GTGTTTTACACCTGCAACTAATACAATAT-TATGTGAGAAGCGTATCTCAATT AAAAAATAATAAAAACAA---AAAAGAATGATTT-------GATG---CAAGAAGTATGA-----CTTTGAGA--AAAG- --AAC-TAAATCTCAGAAAATTG >Sorex_araneus AGCCATTG-GT-GATAATAATAAAAAATATTTGTAGGAAGCTGTGAATTTTACAA-AATATTTAGT---AAAATAATCAC CAAA----------------------------------CTTCCATTTAT--AAAATAAGTAAGTTG-GGAGAGATAAT-- ------TATAGT------------TAACACAGCAATGT-----TGAAATTT----------------------------- -----------GCCAAGACTGTAGA------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------TGTTGA G--TTCTCATTGTGAGGA--AAATTCTGTAACTATTTATGGTTATGG--ATATTCACTAGAGTTATA-TAATAATTATTT CACA-----TACAAATGTGAAATCATTGTATTTCACACCTGAAACCAATATAATGTTCAATTGTCCATATTATCTCAATT AAAATAATTAAAAC-------AAAAAAATCATTT-------GATG---CATGAAGTGTGA-CACCATTTGA----AAAG- --AATTTAAATCTGAGAAAAATG >Canis_familiaris CACCTTGA-CT------------ACACA-TTT-TGAAATGCTGGGCAGCTCACAA-AATGTTTCTT-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------AAAAGAATCATCT-------GATG---CAAGAAGTATGATCCCTCTTTGATAACAAAG- --AAC-TGAGTCTCAGAAAATTG >Felis_catus AGCCTTCA-CT------------ACACA-TTTGTGAAGTGCTGGGCAGCTCCCCAAAATATCTATT-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------ACAAGAATCATCT-------AATG---CAAGAAGTGTGACCCCTCTTTGCTAACAAAAA T-AAC-TGAGTTTCAGAAAATTG >Manis_pentadactyla AGCTTTTT--T------------ACACA-TTTGTAGAATGCCAGGCAGTTCACAA-AATGTTTATT-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------CAAAGAATCAGCCGATGCAAGATG---CAAGAAGTACAACTCCCCTTTAATAGCAAAG- --AAC-CAAATCTCAGAAAATTG >Sus_scrofa AGCCTTTGAGT------------ACACA-TTTGTAGACTGCTGGGAAGTTCACAG-AATGTCTATT-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------AAGAGAATCATCT-------GACA---CAAAAAGTATGACTCCCTTTTGATACCAAAAA TAAACTTGAGTCTCAGAAAATTG >Bos_taurus AGCCTT---GT------------ACACA-TTTGTAGAATGCTGGGCAGTTTACAA-AATATTTATT-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------AAAGGAGTCATCT-------GATC---CAAAAAGTGTGACTCCCCTTGGGTAACAAAAA --ACCTTGAGTTTCAGAAAACTG >Equus_caballus GGCATTTGACT------------ATGCA-TTTGTAGAATGCTGGGTAGTTCACAA-AATTTTTATT-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------GGAAAAATCATCT-------GATG---CAAGAAGTATGACACCTCTTTGACAAGAAAG- --AAT-TGAGTCTGAGAAAATTG >Ceratotherium_simum AGCTTTGC-CT------------ACACA-TTCGTACAATGCTTGGCAGTTCACAA-AATATTTATT-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------GAAAGAATCATCT-------GATG---CAAGAAGTATGAGTCCCCTTTGAAAACAAAG- --AAC--AAGTCTTAGAAAATTG >Homo_sapiens AGCCCTTAACGATATTTAAAAAAACACA-TTTGGAGAATGCTGGAAACTAAACAA-AATGTTTACT-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------AAAGGAATCATCT-------GAGG---CAAGGAGCATGATTTGTCTTTGA----AAAT- --AACTTGAGTCTCAGAAAACTG Bat85_LINE >L1MA9_3END -------------------------------------------------------------------------------- ------------TTTTTCCAGCT----------------TTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTA AGGTGTACAACGTGATGTTTTGATATA----------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------CGTATACATTGT-------------- -------GAAATGATTACCACAATCA-AGCTAATTAACATATCCATCACCTCACATAG---------------------- ----------------------------------------------------------------------- >Equus_caballus GTGGGTAAGCG-----AGGCTTAATCCCATTGGAGATTC--TGAGAAATGGTGTAGA---CTATGCCTCTTTTTTGTGT- --CTGTAGACTTTTCTTTT--------------------TAATTGACATATAACTGACATAT-AAAATTATGTTAGTTTT AGAGGTACAACATAGTGATTCGATATT----------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------TGTGTATACTGT-------------- -------GAAATGATCACCACAATAA-GTCTAGTTAACA--TCCATCAC------TAG---ACTATGCTTCA-----TTT TTTT---------ACCC-AAGAATAAAAG--AGAGGAATATTTATCTAATATCTCCCATCTCCTAAGTGGT >Ceratotherium_simum GTGGGTAAGTA-----AGGCTCAATCCCATCGGTGACTCTTTGAGAAATGA-GTAGA---CTATGCCTCTTTTTTGTGT- --CTGTAGATGTTTCTTTT--------------------CAATTGAGATATAACTGACATAT-AACATTATATTAGTTTT AGATGTACAACATAGTGATTTGATATT----------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------TGTGTGTACTGT-------------- -------GAAATGATCACCACAATTATGTCTAGTTAACA--TCCATCTC------TGG---ACTATGCCTCA-----TTT TTTT---------ACCC-AAGAATAAAAG--AGAAGAATATTTATCTAATATCTCCTGTCTCCTAAGTGGT >Myotis_myotis ATGAGTAAGTA-----AGGCTCAATTCTGTTGGGGACTCTTTGAGAAATGGTGTAGA---CTATGCCTCA--TTTATTT- ------------TTCTTTTCTTATGGTGGACTTTTTAAAATATTGAGGTATAATTGACATAT-ACCATTATATTAGTTTC AGCTGTACAGCGTAATTATTTGATATA----------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------TGTATATATTGT-------------- -------GAAATGATCACCACAATAA-GTCTAGCTAAACT-TCCATCAC------TGG---ACTATGCCTCA---TTTTT TTTT---------ACCCAAAAAATAAAAG--AGAGGAATATTTA---------------------AATGGT >Rhinolophus_ferrumequinum GTGGGTAAGTA-----AGGCTCAATCCTGTCAGGG-CTCTTTGAGGAATGGTGTAGA---CTATGACTCT----TCTTT- ------------TTTGTTT--------------------AACTTGAGATATAATTGACATTT------TATATTAGTTTC AGGTGTATACCATAATGATTTGATATACAGAGGGTGCCAAAAAGATGTCTACACATTTTAAGAAAGGAAAAAACTCTATT AAAATTCTAATTATATATACCGATAACAAAAGATGATGCATACAAGACACATTTGATTTCTGCCGTTACAAGAGATGCTC AAAGTGATTACCATCAGCATAATTTGAAAACAGGTTTTTTCCTTTCTTAAAATGTGTATACATTTTTTTCGGCACCTTCT GTATATCAAAATGATCACCACAATAA-GTCTAGGTAAAA--TCCATCAG------TGG---ACTATGCCTCATTTTTTTT TTTT---------ATCC-CAAAATAAAAG--ATAGGACTATTTATCTGATGGCTCCCATCCCCTATCTGGT >Uropsilus_gracilis GTGGGTAAATA-----AGGTTCATTCTCTTTAGGAACTCTTTGAAGAATGGCATAGT---ATATGCCTCA--TTTTTGT- ------------TTATTTTGGCATGAACACTTT------TAATTGAGATATAATTGACATAT-AACAATACAT------- --------GACACAATGATTCCATGTG----------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------GGTACA-AATGC-------------- -------AAAATAATCATTACTGTGA-GTCTAGTAAGCA--TTCTTTGC------TGA---ACTATGC---------TTT TTTT---AAAAAAACT--ATAAAT--AAG--ACAGGAATATTTTTATACTGATTCCTGCTCCCTAAGTGGT >Solenodon_paradoxus GTGGCTGAGTCTCGTTGGGCTCCACCCTACTAGGGAATCCTTGAGGAATGGTATAGA---CTATGTCTTA--TTTTGGG- ------------------GGGAATGGACTTTTTA-----AAATTGAGATATAATTAACATAG-AACATTCTATTA-TTTC ATACATACAATGTAATGATTTGGCATT----------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------TGTATGTATTGC-------------- -------AAAACGATGACCATAATTC-ATCTAGGTTGCA--TTCATTGC------TGG---ATTTTTCT----------- -------------ACTC-AAGAATAAAAG--AGAGAAATATTAATCTAGTGTCTCCCATCCACTAAGTGGT >Canis_familiaris GTG--TGAGTA-----AAGCTAAGTCTTACTGGGGATTCATTGAGGAATGATATAGA---ACATAACTCA--TTTGTTA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------ACCC-AAGAATTAAAA--AGAGCAATATTTATCTGATGGATCCCTTCCCTTAAGTGGT >Felis_catus GTG----AGTA-----AGCCTCAGTCCCACCAAGAACTCATTGAGGAATGGTGTAGA---ATATAA-TTA----TGTTT- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------ACCC-AAGAATAAAAG--ACAGCAATATTTATCTAATAGGTCCCATCCCTTAAGTGGT >Manis_pentadactyla GTAGGTAAGTG-----AGACTCATTCCTACTGGGGACTC--TGAGGAATGATTTAGA---CTATGCCTCA--TTTGTTT- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------AGCA-AAGAATAAAAG--AGAGGAATATTTATCTGATGGCTCCTGTCCCCTAAGTGGT >Sus_scrofa ATGGGCAAGTA-----AGGTTCCGTCCCACTGGGGACTC--TGAGGAATGGTGTAGA---CTCTGCCTCA--TTTTTTT- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------ACCC-AAGAAGAAAAGAGAGAGCAATATTTATCTAATGGCTCCCATCCCTTCAGAGGT >Tursiops_truncatus GTA-----ACC-----AGCTGTAATCCCATGGGGGATTC--TGAGGAATGGTCTAGA---CTATGCCTTA-TTTTTTTT- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------ACCC-AAGAATAAAAGAAAAAGGAATATTTATCTAATGACTCCCATCCCTTTAGAAGT >Homo_sapiens GTGGGTAAGTA-----AACCTCAGTGCCACTAGGGATTGTCTGAGAAAAGGTATCAA---TTACACCTCA--TTTTTTA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------ACCC-AAGAATAGAAG--AAAGGAGCATGTATATAATGCTTCCCATCCC----GTAGT Bat99_LINE >L1MA9_3END -------------------------------------------------------------------------------- ---GCCTTAAAAAAGAAGGAAATCCTGCCATTTGTGAC-AACATGGATGAACCTGGAGGACATTATGCTAAGTGAAATAA GCCAGGCACAGAAAGACAAATACTGCATGATCTCACTTATATGTGGAATCT-------------------------AAAA AAGTCAAACTCATAGAAGCAGAGAGTAG-AATGGTGGTTGCCAGGGGCTGGGGG-------------------------- ----------GTGGGGGAAATGGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGA GATCTAATGTACAGCATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAG TGTTCTCACCACACACAAAAAAATGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCA CAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCT-CAA--- TAAAGCTGGAAAAA------------------------------------------------------------------ --------------------------- >Sus_scrofa TTAACTCAGACATTTTCTATTTTTTGAGAA-AGCTTGG---CTAGAGATGATC---AAAA---GTCTAGGAAAAAAGGGA ---------------------ACCCTATCATTTGC----AACATTAACGGACCTTAAGGGCATTATGCTAAGTGAGGTAA GTCAAAGAAAAA-------GTACCATATGTTCTCACTTATATG-ACAATTTAAAG-CAAAACAAAAACCAAAGAACAAAA TAAGCCAACTCATATATACAGAGAACAGAATTGGTGGTTGCCAGAGGTAGGGGG-------------------------- ------------------------TGGGGGTGGGTCAAAAGGTACAAACTTCCAGTTAGGAA------ATAAGTCCTTGG GATGTAA-GTATAGCATGGTGACTAAAGTTAAAAATACTGTATTGTATATGGGAAAGTTGCTAAGAGAGTATATCTTCAA AGTTCTTATTACAAGAAGAAAAAGTGTAACTATGTAAGGTGATGG--ATGTTAACTACACTTATTGTGGTGAGCATTTCA CAATACACATAAACATCAAATCATTATGTTGTACACCTGAAACTAATAGAATGT-TATATGTCAATTTTATCT-CAA--- TAAAT------------AAGGTG----------------AT---GGTTCTA-----GCTCTTGACCTTTTTG----TATC AAGTGTTAGAAAACAGGCATAGTCAAT >Tursiops_truncatus TAGACTCAAACATTTTCTATCTTTTGAGACTAGTTTGG---TTGGAGATGATC---AAAA---GGCTATGAAAAAAGAAG -------------------AAGTCCTACCATTTGCAAC-AATATGAATGGACCTTAAGGGCATTATGCTGAATGAAGTAA GTCAGACAAGAAA----AAGTACCATATGTTCTCACTTTTATGTGCAATCTAAAAGGAAAACAGAAACAACA----AAAC TAACCAAAGTCATATATACAGAGAACAG-ATTGGTGGTTGCCAGGGG--GAGGG-------------------------- ----------GTGGGTGAAATAGGTGGAGG-GGGTCAAAAGGTACAAACTTCCAGTTATGAA--ATACATAAGTCTTGGG GATGT-ATGTATGGCATGGTGACTATAGTT-AATATACTATATTGTATATGTG-AAGTTGCTGAAAGAGTAGATCTTAAA AGTTCTCATCACAAGAA-AAAAATCGTAACTATGTAAGGTGACGG--ATGTAAACTAGACTTTCTGTGGTGATCATTTCA CAATACACACAAATATCGAATCATTATGTTGTACACCTGAAAC--ATATAATGT-TATATGTCAATTATTTATGCAG--- TAAA-------------AAAAGACAATGG---ACGTAGAAA---TGTTCTA-----CCTCTTGATCTTTAAG----TATC AATTGTTAGAAAACAGTCATAGTCAAC >Myotis_myotis TTGACTTAAACATTTTCTATTTTTTGAGACTAGCTTGG---CTAGAAATTATC---AACA---GGCAATGGAAAAAGAAG ------------------GAAGTCCTGCCATTTGTGAC-AACATAGATGAACCTTGAGGGCATTATGTTAAGTGAACTAA GTTAGATAGAGAAAGACGAATGCTGTATGATCT----TATATGTGGAATCTAACA-CAAAACAAAAC---------AAAA GAACTAACTTCATAGATACAGAGAACAT-ACTGGTGGTTGTTAGAGGTAGGGTGTGTGTGTGTGTTGTGTGCTGTGTGTG TTTGCTGTGTGTGTGAGAAATGGGTGAAGG-GGGTCAAAAGGTACAAACTTCCAATTATAAA--ATAAATAAGTTCTGGA GATGTAATGTACAGCATGGTGGTTACAGTT---AATATTTTATTGTATGTTTGCAAATTGCTAAGAGAG---ATCTTAAA AGTTGTCATCACATGAA-AAAAATTGTAAATTTGT--GGTGATAG--ATGTTAACTAGACTTATTGTGGTGATCATTTTA CAATATACA--ACTATCAAATCATTATGTTGCACTTCTGAAATTAAT---------ATATGTTCATTGTATTT-GAA--- TAAAA------------AGAAAACAATGG---AAATAGAAA---CTTTCTA-----TCACTTTACCTTTATG----TATA ACATGTTGGAAAATAAATATGGTCAAT >Rousettus_aegyptiacus TTGACTCAAATATTTTCTATTTTTTGAGACTAGCTTGG---CTAGAAATGATC---AAAA---GGCAATGAAAAAAGAAG ------------------AAAGTCGTGCCATTTGTGAC-AACATGGATGGGCCTTGAGGGCATTATGCTAAGTGAAATAA GTTAGGTAGAAAAAGACAAAAACTGTATGATCTCACTTATATGTGGAATCTATAACAAAAACAAAAACGGA-----AAAA CAACCCAACTCATAGATACAGAAAACAG-GTTGAGGGTTGCTAGAGGAAGGGTAT-------------------TAGGGG TAGGGCATGTGTGTGGCAAAGTGGTTGAAAATGGTCAAAAGGTGCAAACTTCCAGTGATAAA--ATAAATAAGTTATAGG GATGTAATCTACAGCATGGTGTCTATAGTTATTAATACCATATTGTACATTTGAAATTTGCTAAGAGAGTCAATCTTAAA AGTTGTCATTACATAAAGAAAATTTATATCTATGCATGGTGATGA--ATGTTAACTTGACTTATTGTG-TGATCATTTTG CAATATATACAAATATTGAATCATTGTGTTGTACTCCTGAAACTAATGT--------TATGTCGATTCTATCT-CAG--- TAAAA------------AGAAGGCAATGT---AAATAGAAA---CTTTCTA-----CCTCTTTACCTTTATA----TATA ACGTGTTAGAAAACAAATGTAGTCAGT >Condylura_cristata ATGACTCAAATATTTT-TGTTTTGTAAGACAAACAAGGTGACTAAGAATGATG---AGAGAGA-GAGAGAGAGAGAGAAG ------------------GAAATACTGTCATTTGAGGCAAAAAGGAATGGAACTTGAGGGTACCATGCTAAGTGAAAT-A GTAATTCAAAAA-------------CATGATTTCAGATA----------------------------------------- -----------------ACAGAGAATAG---------------------AAGGA-------------------------- -------------GAAGAAATGGGTGAGAG-GGATCAAAATGTACAAAATTCCAGTTACATA---TAAATTAGCGTTGGG GATGTGATACACAACATGGTGACTCTAGTCTCAAATAC-----TGTATATTTGAAAGTTGCTAAGGAATAAAATCTTAAC TATTCTTTCTAT--------------------TGT---GTGTTGG--ATGGTAG-----CTTATTATAATTATCATTTCA CAATATATATTTTTATTAAGTCA-TATGTTGTACACATAAAATTAATATAATGTATATATACCCATTATATCA-CAAAAC TAAAGA-----------AAAGGGTAATGGAAAAGGTAGAAA---TGCTCTA-----GCTCTTCACCTTTATG----GATA AAGTGTTAGAAAATAG--GCAATCAAT >Uropsilus_gracilis GTGACTCAAAC-----CTGATTTGTATGACTAGGTGA----CCAGGAATGATT---AAAAAAATGCAATGAAAAAAGAAG ------------------GGAAATTTGTCATTTGAGAC-AAAATGAATGGA--TTTGAGGTAGTATGCTAAGTGAAATAA GTCAGATATAGAAAGACAACTACTACATGATTTCACTTATATGTAATATCTGACA---ATACAAAAATCAAA----AATG ------AACTCACAGATA-ACAGAACAG---------------------AAGGA-------------------------- ----------ATATACAAACT-------------TCAAAACCCACAAACTTCCAGTTAGAAA---TAAATATGCCTTGGG GATATGATGCACAACATGGAGACTGTATTTTAAAATA-----TTGTGTATC--AAATTAACTAAGAAAGAAAATCTTTAA TGTTCATGTTATGTTT----------------------GTGATGG--ATGCTAA-----CTTATTGTGATGATCATTTGA TAATACTTACCTTTATCAAGTC--TATATTGTATAGCCAAAACTAGTAATA-----ATGTATTCATTATATCT-TAATAC TAGA-------------AAAAGATCATGCAA---GTAGAAA---TTTTCTA-----CCTCGTCACCTTTAAG----GATA GAGTGTTAGAAAATAA--GCAATCAAT >Canis_familiaris TCAACTCAAACATTTTCTATTTTT-GAGACTAGTTGGG---CTAAAGATGGTC---A-AA---GGCAATGCAAGTGGAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TGTGGTAGAATGTTTCGTAATCTTTCTG----TATA AAGTGTTAGAAAA------TAGTCAAT >Felis_catus TTGACTCAAACATTTTCTATTTTT--AGATTGGTTGGG---CTAACGATGACC---AAAA---GGCAATGGAAGTAGAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TATTCTA-----CCTCTTTATCTTTGTG----TATA AAGTG-------AGAGGCATGGTGCAT >Manis_pentadactyla TTGACTCAAACATTTTCTATTTTTCGACATTAGTTGGG---CTAGAGATAATC---AGAA---GACAGTGGAAGTAGAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TATTCAGT----TTTTTTTACTTTTATGTATATATA AAGTATTAGAAGATAGGCACAGTTAGT >Equus_caballus TCAACTCAAATATTTTCTATTTCTTGAGCCTAGCTGGG---CTAGACTTGATC---ATAA---GGCAATGGACGTAAAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------CTTTCCA-----TCTCTTTAACTTTATG----GATA AAGTGTTAAAAAATAGGTATAATCAAC >Ceratotherium_simum TCGACTGAAACATTTTTTATTTTTTGAGACTAGGTGGG---CTAGACATGATC---ATAA---GGCAACAAAAGTAACAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------CTTTCTA-----CCTCTTTACCTTTATG----GATG AAGTGTTAGGAAATAGGCATAGTCAAT >Homo_sapiens TTGACTTAAATATTTTCTATTTTTTGGAACTTGCCGGG---CTAGAGATGATC---AAAT---GGCAATGGAAGTAGAAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------CTTTCTA-----CCTCTTTATCTTTATG----GGTA GAGTGTTAGAAAATGGGTGTAGTCAAT Bat102_LINE >L1MA9_3END -------------------------------------------------------------------------------- ------------ACACAAAAAAATGGTAACTATGTG-AGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTC ---ACAATGTATACGTATATCAAAACATCACGTTGTACACC-TTAAATATATACAATTTTTATTTGTCAATTATACCTCA ATAAAGCTGGAAAAA----------------------------------------------------------------- ---------------------------------- >Canis_familiaris GTCCGGTTCATCTCTGCCTCAGTGGCAGCATTAAATTCAGCACCTAGTCATGGCCCAGAACTCATCTGG---ATAAACAA CGAA--TGA---------TTTAAT--TATCTCTATG-AGGTGGTGG--GTGTCAATTACACTTATCGTGGTCATCATTTC ---ACAA--TATACAGAAGTCAGACCTTTACGCCATATCCT-TGGAACTCATACAG-TGA--TGTGCTGATTATATCCCA GTAAAAGCGGGGAAACAAAACCCCCAAAACAAAATAT----AACAAAAAG------GA---ATGAACACAAGTGGGGTA- --AAGACTAGCTCTTCTTCAGCGCTTGGCTCCCA >Felis_catus GTCCAGTTCG-----------------------------GCACCTAGTAACGACCCAGAACTCATGTGG---ATAAACAA CGAG--TGA---------CTTCAT-GTATCTATATG-AGATGACAG--ATGTCAACTAAACTTACTGTAGTGATCATTTC ---ACAA--TATACCCAAGTCAGACCTTTATGCTGGATGCT-TGAAACTCATACAG-TGAGGTATGTCAATTATAGCTCA ATAAAACTGGGAAAAC---ACCCCCAAAACAAAACAC----AATAAAAAT-GAA-TTA---ATGAGCACAAGTAGGGTG- --AAGACTAGCTCTTCTTTAGCTCTTGGCTCCCA >Manis_javanica GTCTGATTTATCTCCGCCTCTGCTGCAGTGTTAAATTCAGCACCTAGTAATCACCCAGAAAGCATTTGG---ATAAACAG TGAA--TGA---------TTTATT-GTATCTGTATGAAAATGATGG--ATGGTAACTAAATTTATCATGGCAATCATTTC ---ACAA--TATGTGTAAGTCTAGCCCTTATGCTGGTTTTTAAAAAACTCATACAG-GAATGCATGTCAACTATATCTCA ATAAAACTAGGAAAAGAAACCCCCAAAAAACGAAAAG----AAAAAAACACAGATTGA---AGGGACACAAGTGGGATG- --AAGAGCAGCCCTTCTTTAGCTCTTGGCTCTCG >Sus_scrofa GTCCAGTTTCTCTTTGCCACAGCTGCTGCATTAAATTCAGCACTTAGTAATCACCCAGAAGACATCTGG---ATAAATAA AAAAAGTGA---------ATTGTT-GTATCTATATG-AGATGATGG--------------------GTGGTAACCATTTC AATACAA-ATATATGCAAGTCATACCTTT-------ACACT-TGAAACTCCTGCAG-GGAGGCATGTCAGTTTTATCTTG TTAAAACTAGAATACAAAACAAACACCAACACCCCTCC---CCCAACAAT-GAA-TGA---ATGCACAC-AGTGG-AT-- --AAGACCAGCTGTCCTTTAGCTCCTGGCTCCAG >Bos_taurus GTCCGGTTCATCTTTGCCTCTGCTGCAGTATTGAATCCAGCCCCTAGTAATTGC------------TGG---ATAAACAA TGAA--TGA---------TTTATT-GTATCTATAGG-AGATGATGA--GTGTTAACTAAAC------------TCATTTC ---ACAA----TATTTTTGTCAAACCTTTATGCTGGACTCT-TGAAACTTACACAG-TGAGATACGTCGATTACATCTCA ATTTAACTGGAAAA---------CAAAGATAAAGCCCC---TCAAAGGAT-GGA-TGC---ATGAACACAAGTGGGATA- --A--ACTAGCTCTTCTTTGGTTCTCGGCTCCCA >Myotis_myotis GTCCCATTCACCTTTGCCTCCGCGGCAGCAT--------------------CACCACGCAAACATTTGG---GCAAACAA TAAA--TGA---------CTTACT-GTTTCTCTGTG-AGATAATGA--ATAGTCACTGAACTTGTGGTGGTGATCCTTTC ---ACAG--TATATGTAAGTCAAAGCTTTATGCTGGACACT-TGAAACTCAAACAG-TTATGAATGTCAATTATACCTTA ATAAAACTGGAAAAAA---CTCCCCCAAACAG---------AAACAGAAC-AGC-T-A---ATGAAGAT-AGTGGGAGA- --AAGATGAACTCTTCCTTCACTCTCAGCTCCCA >Rousettus_aegyptiacus GTCTGATTCTTCTTTGCCTCAGTGGCAGCATTAGATTCAGCACATAGTAGTCACCTAGAAAACATCTGG---AT--ACAC TGGA--TGG---------TTTACT-GTATCTGTATA-AGATGATGG--GTATTAACTAAACTTATGGTGGTAATCACTTC ---ACAA--TGCACGTAAGTCGAATCTTTATGCTATATACT-TAAAACTCATACGA-TGATGTATGTCAGTTGCATTTTG ATAAAACTGGGAAAA----ATCCCTAACCCCAAA-------CCCAAAAAC-AAA-ACT---ATGAACACAAGTGGGATA- --AAGACCGGCTCTTCTTCAGCTCTTGGGTCCCA >Equus_caballus GTCTGATTCATCTTTACCTCAGCTGCAGCATTG-----------TGGTAATCACCCAGAAAACATCTGG----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------ATAAACAAT-GAA-TGA---GGGAACAC-AGTCAGATA- --AAGACCAGCTCTTCTTCAGCTCTTGGCTCCCC >Ceratotherium_simum GTCTGATTCATCTTTGCCTCAGCTGCAGCATTGAATTCAGCACCTAGTAATCACCCAGAAAACATCTGG----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------ATAAATAAT-GAA-TGA---GTGAACAC-AGTGGGATA- --AAGACCAGCTCCTCTTCAGCTCTTGGCTCCCC >Condylura_cristata GTTCATTGCATCTTTGCCTCAGCTGTGGCATTAAATCC-GCACTTTGTAACCACCCAGAAAGCCTGTGG----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------ATAAACAAT-GGG-TGA---GTG-ACCT-GGTAGGACA- --GAAACTAACTCTTC---AGCTCCTGGCTGCAG >Uropsilus_gracilis GTTCGATGCATCTTTACCTCAGCTGCAACATTAAATCCTACACCTAGTAGTCACCCA-AAAGCCTCTGG----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------ATAAACAGT-GAA-TGA---ATG-----ACATGGGATA- --CACACTAGCTCTTCCTCACCTCTTGGCTCCAG >Homo_sapiens GTTCAATTTATCTTTGCCTCAGCTGCAGCACTA-ATTCAGTAC----TAAGCGTCCAGAGAATGTTTGG----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------ATAAACAAT-TAG-CGA---A-GAACTCAACCAAGATAA AGAAGAATAGTTCTTCTT-AGCTATTGGCTCCAG Bat109_LINE >L1MA9_3END -------------------------------------------------------------------------------- -TTTTTCCAGCTTTATTGAGGTATAAT------TGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTT GATATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCAC---------------- ----------------------------------------------------------------------------- >Sus_scrofa AAAGAATTGGAAAGTATAGAT--TGTCTCACCA-TCTCC----TATATACTTAATACTT----TTTACTGATTTATTT-- ----------------AGAG--ACAGT------TGACA----GACATTATATTAGTTTCAGGTGTATAATATAATGATTA AGTATTTGTATATATTGTAAAATGATC---ACAATAAGACTAGTTAACAT--CCAGA----------ATTAC--TTATTT ATTT---AATA-AAGATTTT----TATAGCTC-TGGTTTGTGCCAGGCACTGTTCT---ACCTTTACAAATACAAAC >Bos_taurus AAAGAACTAGAAAGCATGGATCATGTATCACCA-TCTGT----TATACACTTAACATGTA---TCAAT----TTATTT-- ----------------AGAGGTAACATATGATATGATAT---GATATGATATTAGTTTCAGGTATACAACATAATGATTT GATGTTTGTGTATTTTGCAAAATGATCACCACAATAAGTCTAGTTAACAT---CA---------------ACAATTACTT ATTT---AACA-AAGACTTT----TACATCCCCT-----GTGCCAGGCTCTATTCT---ACCTTTACAAATAAGAAC >Equus_caballus AAAGAACTAGAAAGCATAGATCATGTATCATAT-TCTATT--ATATATACTTAATACTTA---TTTATTCATTTATAT-- ----------------CAAGGTATAAT------TGACATAT-AACGTGATTTTAGTTTCAGGTATACAACATAATAATTG GATATTTGCATATATGGCAAAAAGATCACCACAATAAGTCTAATTAACAT--CCAGA-----------TTACC-TTATTT ATTT---AGCA-GAGACTTT----CATAGCC-TTGGTATGTACTGGGCACTGTTCC---GCCTATACAATTATGAAG >Ceratotherium_simum AAAGAACGAGAAAGCATAGATCATGTATCACCA-TCTAAT--ATATATACATAATATTTA---TTTATCCATTTATAT-- ----------------TGAGGTATAAT------TGACATAT-AACATGATATTAGTTTCAGGTGTTCAACATAATAATTG GATATTTGTATAGATTGCAAAATTATCACCACAATAAGTCTAATTAACAA--CCAGA----------TTCAC--TTATTT ATTT---AACA-AAGACTTT----CATAGCCCTTGGTATGTACCAGGCACTGTTCC---ACCCTTACAAATATGAAC >Myotis_myotis AAAGAACTAGAAAGCATTAATCATGTATCATCTATTTAT----TATATACTTAATATTTA---TTTATTTACTTATTT-- ----------------AGGAGTATAAT------TGACATAT-AACATTATATTAGTTTCAGATGTACAACCTAGTGATTC AAAACTTGTACATACCGAGAAATGATCACCACAATAAGTCTAGTTAACAT---TGTA----------TTTAC--TTATTT ATTT---AACA-AAGACATT----TATAGCTCGTGTTATGTGCCAGACACAGTTTTAAGAATTTTACATATATGAAC >Rousettus_aegyptiacus AAAGAATTAGAAAGAGTGGATCATGTATCACCA-CCTATGTAGTATATATTTAATATTTA---TTTAT----TTATTT-- ----------------AGAAGTATAAT------TGACATAT-AACATTATATTAGTTTCAGGTGTACAACATAGTGATTC AGTATTGGTATATATTGTGATATGATCACCACGATGAATCTAGTTGGCAT---CAAA----------TTTAC--TTAGTT ACTT---AACAAACCACATT----TATAGCT-TTGTTATCCACCAGGTA-----CTAAAAACTTTACAAACATGAAC >Canis_familiaris AAAGTACTAGAAAGCATAGGACACGGATCACA--TCTAT----TATATATTTAATATTTA---CTTATTTATTTA-AC-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------GATA-AGGATCCTACGATAGGGTCCAAGGATATAGCCAGGCACTGTTCTAAGAACTTTACAAATATGAAC >Felis_catus AAAGTACCAGAACGCATAGATCATGCATCGCTC-TCTCT----TATATACTTAATATTTC---TTTACTTATTTATTT-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------AACA-AAGACTTT----TATAGCCCTTAGTGTGTGCCAGGCACTGTTCTAAGAACTTTATAAATATGAAC >Manis_pentadactyla AAAGACCTACAAAGGACAGATCATGTATTACAA-TCTAT----AATGTATTTACTACTGA---TTTATTTATTTATTT-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------AACA-AAGACTTT----TATAGCCCTTGCTACGTGCCAGGCAGAGTTCTAAGAATTTTCCAAATACGAAC >Condylura_cristata AAAGAACTAGAAAGTATAGATTATGTATCACCG-TAGAC----TATATACTTACTG--TA---TTTATTTATTTACTT-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------CACA-AAGAAATG----TATATCCCTT-----------GGTACTATTCTAAGAACTTTATAAATATGAGC >Solenodon_paradoxus AAAGAATTAGAAAATATTGATCATGTACTACCA-TCTAT----TATACACTTAAAGTTTA---TTGACATATTTACTT-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------AACC-AAGACTTT------GAGTCATTCACATGTACCAGGCACTGTTCTAAGAACTTTACAAATAAGAAC >Cavia_porcellus GAAGAATGAGAAAGCAT-----ATATATTACTA-TCTGT----TATATACTTACAATCTA---TTCA--------CTT-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------AACA-AA-ACTATA---CACAGTCCAAGTTGTATGCCAGGCACTGTCCTAAGAGTTTTATGAATAAAAAT Bat113_LINE >L1MA9_3END ---------------------------------------------------------------------------GTGAT GGATATGTTAATTAGCTTGATTGTGGTAA---TCATTTCACA--ATGTATACGTATATCA-------------------- ----AAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA---- -------------------------------------------------------------------------------- ------------------------------------------------- >Canis_familiaris TAAGGAG-TTGCTCAAACTGGAAGACAGAGTTGGAAAAAAGAACAAAAGAGC---AAGAGAAGTGAGCGCGG-------- -----GGCCTACTG---------TGGTGA---ACGTCT-GCA------------ATAGTG-------------------- ----AATCATTACATTGTACCCCTGAAACTGGCGTGATGT---CATGTCAACTATACTTGAAGAAGAAAAAA-------A GGAAGAGGAGGAGGAAGGGGGGGGGGAAGGAG---AAGAAGAGTTAGTG-CGG---TGCCGAATGGGGCAGGGCTC-GCA CTCACTGTCAGGCATTTGGAATC-CTCCGG-CAGGAAGGGTGACGTCAA >Felis_catus TAAGAAACTT-------TGAGAATACAGAGTTGGAATAAAGAACAACAGAGT---AAGAAGAGCTAGCATGG-------- -----GATTTATTG---------TGGTGA---ACATTTTATAAGATATACACAAAGGCTG-------------------- ----AATCATTACATTGTACACCTGAAACTGGTGTAATGT---TATATCAGCTACGCCTGAAGAAGGCAGAGCTCTGACT GGAGGGGGAGGAGGAGGAGGAGAGAAAG-------AGGATGANNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Phataginus_tricuspis TGAGAAGTTTACCCAAACTGGGATAATGAGTTGGAATAAAG----AAAGAAT---AAGATAAGTTAGCATGA-------- -----GATTTATTA---------TGGTGATATACATTT-GTA------------TAAATGTTTGTATAATATATATAAAC ATCAAATCATTACATTGTACACCTAAAACTAATATAATGT---TATGTCACTTACACCTCAATTAAAAAAAC-------C T---------------------------------------CAGTTATTG-TGG---TGCCAGACAGGGCAAGGCCCTGCA TGCAGTGCCAGGGGTTTGGAATTGATCCTG-TAGGCATGGGGGAGTCAA >Sus_scrofa TAAGAGGTTTACTCAAACCAAAACAAAGAGTTGGAATAAAG----ACTGAAT---AACAAGAGCTACCATGG-------- -----GATTTATAG---------AGGTGA---TCATTTTGCA--ATATATACAAATAGCA-------------------- ----AATCGTTAAGTTGTACACCTGAAACTAAGATAA------TATATCAATTATACCTCAATAAAAAGGAA------AA GGAGAAAAAAAAAAAAAA-----------------AGGCAGAGTTAG-G-TGG---TGCCAAAAAGGGCAGGGCCCTGTG TTCAGGGCCAGGGGTTTGGAAGT-ATCCAA-------TGGTGTAGGCCA >Bos_taurus TGAACAGTTTCCTCAGACTGGGACAAAGAGGTGGAATAAAGGAAGACAGATT---AAGAAGAGTTATCGTGG-------- -----GATTTATTTGTTTGTTGTTGGTGA---TCATTTTGCA--ATGTATACAAATACCA-------------------- ----AATCATTAAGTTGTACACCTGAATCTAAGGTAATGT---TGTATCAATTATACCTCAATTAAAACACACACACACA CACACACACACACACACACA---------------CACACAAAGCAATG-CGG---TGTCAAACAGGGCAGGACCCTGCA TTCAAGGTTAGGGATTTGAAACACATCTAG-GAGGGACAGTGCGGTTGA >Myotis_myotis TGGGAATTTTACTCAAACTGAGTCAAAGAGTTGGAATAAAG----AAAAAAT---AAGA---GTCAGTGTAA-------- -----TACTTCTTA---------TGGTGA---TCATTTTGCA--ATATATACAGATACCG-------------------- ----AATCCTTACATTGTACACCTGAAACTAATATAATGT---TGTGTTAATTACACCTCAATTAAAAAAA--------- -----------------------------------AAAAAAGGTTAGTG-TGC---TGCCAAATGGGGCAGGGACCTGTA TTAGGTGTCAGGGGTTTGGAATTAACCCA--TAAGGATAGTGAAGTCAA >Rousettus_aegyptiacus TGAAAAGTTTACTCAAACTGGATCAAGAACTTGGAATTAAG----AAGGGAT---AAGAAGTGCCAGTGTGG-------- -----GACTTCTT------------GTGA---TCATTTTGCA--GTATATACAAATATTG-------------------- ----AAACATTATACTGTATACCTGAAACTAAAA-----------TGTCTATTACACCTCAATTAAAAAAAAAA------ -----------------------------------AAAAAGAATTATTATCAT---GGTCAAATGTGGCAGGGCCCAGCA TTCGGTGCCAGGGATTTGGAATTTATCCCATTAAGTATGGTAAAATCAG >Equus_caballus TGAGAAGTTTACTCAAACTAGAACAAAGAGTTGGAATAAAGAAAGATAGAAT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------AAGAAGAGTTAGCC-CAG---TGCCAAACTGGGGGGCACCCTGCA TGCAGTGTCAGGGGTCTGGAATTTATCTCA-CAGGAATAGAGAAGTCAA >Ceratotherium_simum TGAGAAGTTTACCCAAACTAGAACAAAGAGTTGCAATAAAG----ATAGAAT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------AAGAAGAGTTAGCA-TGG---TGCCAAATGGGGTAGGGCCCTGCA TTCAGTGTCAGGGGTTTGGAATTTATCCCA-CAGGAGTAGCAAAGTCAA >Condylura_cristata TGAGACGTTTATGCAAGCTGGGTCA-AGAGTTAAAATGAAGACAGATAAAAT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------AAGAAGACTCAGTA-CAG---GACCAGTTG--------------- -------------------------------TAGAAATAGCGAAGTGAC >Erinaceus_europaeus TGAGACAGGTACTCAAACTAGGACCAAAATCGGGAATGTGGAAC---GGTAA---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------AAGAAGAGTCAGTG-TGG---TGGGG------------------- --CAGGGCCAGAGCTTTGGGATTTCTCCTT--AGCAATAGTCAAGCCAA >Homo_sapiens TGTGAAGTTTACTCGAACTGGGACAAAGAGTTGGAATGAAGAA----AGAAT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------AAGAGGAGTTAGTG-CAG---TGCCAAATGGTGCTGGGCCCTGCA TTCAATATCAGGGGTTTGGAATTTATACTG-AAGGAATAGGGAAGTCAA Bat117_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------TTTTTCCAGCTTTATTGAGGTATAATTGACA AATAAAAATTGTATAT---------------------------------------ATTTAAGGTGTACAACGTGATGTTT TGATATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTACCATTTTT TTGTGTGTGGT--------------------------------------------------------------------- ------------- >Canis_familiaris NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNNNN NNNNN----------------------NNN-------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------TTATTTTTAAATGTTTTT----------------ATTGAGATGTAATTGGCA AATAATATGTCA-------------------------------------------GTTTCAG--GTACAGCATG---ATT CAATAAATGTATATATTGTGAAATGATCA---CAATAAGTCTAGATAAC--ATCCATCACCACACAAAGTTACAA----- --------------TT---CTTTTAATTTTT---AAAATTTGTGCAGAATGATA---TAATAGCAATCTTCC---CACCC ---TGGAAAGATA >Felis_catus TCTGTGATAAA-TACTTCCGCGGTCTC-TTGGTTGAGATGTTCCTCAATGCATTACTTT----TTCTCCTTAAAGTGTTT AAAAT----------------------TTT---AAACAATTTTGGGGCGCCAGGGAGCCTCAGTCTAAGGTTCAGCATCT GACTCTTGATTTCGGCTCAGGTCACGATCTCACGGTTTGTGGGTTCGAGCCCCACACTGGGTTCTGTGCTGACAGGGCAG AGGCTGCTTGGGATTCTGTCTCCCTCTCTCTCTCCCCATTACAAAAGTAAATAAATCAATACATTCTAAAGTAAATAAAT AAATAAATATATAATTTTTAAATGGCTTAAAAACTTAAAACTTTTT----------------GTCGAGACATAATTGACA TATAATATTATATTA----------------------------------------GTTTCAGGTGTACAGCATG---ATT CAATAAATATATATATTGTGAAATGATCACTGCAATGGGTCTAGGTAAC--ATCTATTACCACAGACAGTTATAAC---- --------------TTTTTTTTTTTACTTTT---TAAATTTGTGCAGAATGATA---CGATAGCAATCCTCCTGGCCCCC ---CAGAACAAAA >Manis_pentadactyla NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTTGAAAGGTGCC---------------------CTCCTT--------- ---------------------------TAT-------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------GAAAAAAATTTTTTTTTTC----------------ATTGAGATATAATTGATG --TAATATTATATTA----------------------------------------GTTTCAGGAATACAGCATAATGATT TAATGCAAGTATACATTGTAAAGTGATCACCACAATAAATCTAGTTAAC--ATTCATCACCACGCATAGTGACAGT---- --------------TT--TTTTTTAATTTTT---GAAATTTGTGCAGAATGATA---CAATTGCTATCTTCCT-GCCCCC ---CGGAATGAAA >Equus_caballus TCTGTGATAAA-CACTTTGGCACACAT----ATTGGGATGTGCCTCACTATTGTTTT------TCCCCCTTAAAGTGTTC CCTCC----------------------TTT-------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------AAAAAAAAAAATT----------------ATTGAGATATAACTGACA TATGAAATCATATTA----------------------------------------GTTTCAAGTGTACAGCATA---ATT TGACATCTGTCTATGTTGCAAAATGATCACCACAATAAGTCTAGTTAAC--ATCCATCACCACAC--GGTTACAAA---- --------------TT--TTTCTTA--TGTT---AAAATTTGTGCAGAATGATA---TAATAGCCATCTTCCT-GTTTCT ---TGGAATGAAA >Ceratotherium_simum TCTGCGATAAA-CCCTTGGGCAGTCTCTTTGGTTGGGATGTG-TTCACTACTTTTTTTT----TTTCCCTTAAAGTGTTC CTT------------------------TTT-------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------AAAAAGAAATTTTT----------------ATCGAGATATAACTGACA TATAACATTATATTGTTATATGTCATTATATTGTTTCATTGTACAGCATTATATTGTTTCAAGTGTACGGCACAAGGATT TGATATATGTATATAGTGTGAAATGACCACCACAAT--GTCTAGTTAAC--ATCCATCACCACAC--AGTTACAAA---- --------------TT---TTTTTTATTTTT---AAAATTTGTGCAGAGTGATA---TAATAGCCATCTTCCT-GCCCCT ---TGGAATGAAA >Myotis_myotis NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGTTGCGATGTGCCTCACTGCTTCTC-------TTTTCCTTTAAGTTACC CTCC-----------------------TCT-------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------AAAAATTAAAAATTT----------------ATTGAAATATAACTGACA --TAATGTAATCTTA----------------------------------------GTTTCAGGTGTACAGCATG------ ------ATGTATATAAGATGAAATGATCACCACACAGAGTACAAATTAT--TT--------------------------- --------------TT--TATTTTTATTTTA---AAAATTTGTGCAGAATGAAG---TAACAGCTATCTTCCT-GCACCC ---TGGAATGAAA >Rousettus_aegyptiacus TCTATGATAAG-TACTTTGGCAGCCTCTTTGGTTGGGATGTGCTTCACTACATTTTTTTCCCCCTCCCCTTAAATTCTTC CTTAC----------------------TTT-------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------AAATTATTTTTTAAAAATTTT----------------ATTGAGCTATAATTAACA CAT---ATTATATTA----------------------------------------GTGTCAT-TATACAATACAATGATT TATTA--TGTATATATTGTGAAATAACCA---CAATATGTCTAGTTAAC--ATCCATCACCACAC--AGCTACAAA---- --------------TT------ACTATTTTT---TA--TTTGTAGAGAATGATA---TAATAGCCATCTCCCT-GCAACC ---TAAAATGAAA >Sus_scrofa TCCATGATAAA-CACTTTGGCAGTCTC--TGGTTG-GATGTAACTCATTACTTTTT-------TTTACCTTAAAGTGTTT CCCAC-----------------------TT-------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------TTTTGTTTTCAATTTTT---------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------AAAATTTGTGTAGAATGATATACTAATGGCCATTTTCCA-ATTCCC ----AGAATGAAA >Tursiops_truncatus TCTATGATAAAGCATTTTGGTAGTCTCTTAGGTTGCGAT-TGACTCATTACTTTAT-------TTTACCTTAAAGTGATC GCTCC----------------------TTT-------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------TT-TGTTTTCAATTTTT---------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------AAAATTTGGCAAGAATGATATACTAATAACCATCTTCCA-GCACCC ----AGAGTGAAA >Condylura_cristata TCTATGACTGACAACT--GGCAATATCTTCAGAGGGGATAGGTTTCATTACTATTT-------TCCCCCTTAAAGTTGCT T--------------------------GCT-------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------TC--TTTTTTAATGTTT---------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------AAAATGTGTGCTGAATGATA---TAATTATCATCAGCTTGTCTCAT ---TTTAATGAAG >Sorex_araneus TCCTTGTCAACCTTTT-----AGTGTCTTTAGTCAAGATGTACATCACTCCTT----------CCCCCCTTACTCTGTTC CCTCCCCTTCAAAATTAATTAATTAATTAA-------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------TTAATTAATTAAATTTA---------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------ATGCTTCTGGCAGAATACTT---TTATAATCATATCCCTGTCCCTT GAATAAAATAACA >Homo_sapiens TTTCTGATGAA-------------CACCTTGGTTGAGATGCGCCTCATTACTTTTA-------TTTCCCTGAAAGTATTC CTTA-----------------------CCT-------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------TT--TTTGTTAACTTTT---------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------AAAATTTGTGGTAAATGATA---GAATAGTCATTGTTCT-GTCTCC ---CAGAATGAAA Bat120_LINE >L1MA9_3END -------------------------------------------------------------------------------- ---------------TTTTTCCAGCTTTATT--------------------GAGGTATAATTGACAAATAAAAATTGTAT ATATTTAAGGTGTACAACGTGATGTTTTGATATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATAT CCATCACC-----------TCACATAGTTAC-----CATTTTTTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTA GCAAATTTCAAGTATA--CAATACAG---TATTATTAACTATAGTCACCATGCTGTACATTAGATCT------------- ------------------------------------------------------------------ >Canis_familiaris TGGTCCCCTCGAGAACCTTCCT------------------------CTTCA-GAGAAT-GTTTTAGTTACACTTCCA--- GGAACAACTGTA-----------TTATTACT-----------------------ATGTAATTGGCATAG-AACATAACAT TAGTTTCAGGTATACAACATAATGATTTGATATTTGTATATATTGCAAGAGGATTGCCACAATAAGTCTAGTTA--ATAT CCATTACCA----------ATACATAGTTACAAAAAAATTCTTTTTCTTGTGATGAGAAGTTCTAAGATCTATTCTCTTA GCGACTTTCAAATGTA--CCATACAGTGTTATTACTAACTCTAGTCACCATGCTGTACA-----------TGAACAGCTA TT---GAT-TTACCATTTAA--TTTCTTAGGATCCAGTT-GGACTTTACCTT-------TTTTAAG >Felis_catus AGGTGCCCTCATGAACCCTCCC------------------------CATCA-GGGGAT-GTTTTAGTTCCACTTCCC--- ACAACAACTGTT-----------TTTTTGTTTTTTTTTGTTTTTTTAAGTTGAGGTGCAGTTGACATAC----ATTACAT CAGTTTCAGGTGTACAACATAATGATTTTATATTTATACATATTGCAGGATTATGGCCACTATAAGTCTAGTTA--ATAT CTATTACCATACATAGTTCATACATAGTTAC--AAAAATTTTTTTTCTTGTGTTGAGGAGGTCTAAGATCTATTCTCTTA GGAACTTTCAGATATAACAAATACAG---TGTTACGAACTCTAGTCACCATGCTGTACA-----------GGA--AACTA TT---GAT-TTTCCATTTAG--TTCCTTAGGCT-CAATT-GGATTTCACCATT------TTTAAAG >Manis_pentadactyla TAGTCACTTCCAAAGCCCTCCA------------------------CCTCA-GGGAAT-GTTTCTGTTGCACTTGAC--- TGAGCA-TTGTT-----------TTTGTATT--------------------GAGGTACACTTTACATAC-AACATTAC-- -----------GTACAACATAATGATTTGGTATTTGTATGTATTGCAAAATGATCACCACAATAAGTCTAGTTA--ACAC ACATCACC-----------ATACACAGTTACCCCAAAA--TATTTTCATGTGATGGAGACTTTGAAGACCTATTCTCGTA GCGACTTTCAAATATA--CAATATAG---TCTTATTAACTGTCATCACCATGCTGTACA-----------TAAACAACTC TT---GAC-TTTCCATTTAA--TGTCTTTGGCTCCAATT-AGATTTCATATTTG-----TTTTTAA >Equus_caballus TGGTCCCCTCCAGAGTCCTCCT------------------------CATCA-GAGGAT-GTTTTGGTTATACTTCGT--- TGAACAACTACT---TTATTTTTTTTTTACT--------------------GAGATATAATTGACATAC-AACATTACAT TAGTTTCAGGTGTATAACATAATGATTTGATATTT-TATATATTGCAAAATGATCACCACAAGAAGTCTAGTTA--ACAT CGGTCACC-----------ATACATAGTTAC---AAAAATTTTTTTCTTGTTATGAGAACTTTTAAGATCTGTTCTTTTA GAAACTTTCAAATATG--CAATACAG---TATTATTAGCTATGGTCACTATACCGTACA-----------TGAACAACTA TT---GAT-TTTCCATTTAA--TTTCTTTGGCTCCAATT-GAATTTTACATTTG-----TTTTTAG >Tapirus_indicus TGGTCCCCTCAAGAGCCCTCCT------------------------CATCA-GAAGAT-GGTTTGGTTGTACTTCAC--- TGAACAACTATT---------TTTTTTTACT--------------------GAAGTATAATTGACATAC-AACATTACAT TAATTTCAGGTGTA---CATAATGATTCAAGATTTGTATATATCACAAAATGATTACCACAAAAAGTCTAGTTA--ACAT CTGTCACC-----------ATATATAGTTAC-AAAAACTTTTTTTTCTTGTTAAGAGAACTTTTAAGATCTATTCTTTTA GCAACTTTCAAATATG--CAATACAG---TATTATTAACTATAGTCACCATGCTGTACA-----------TGAACTACTA TT---GAT-TTTCCGTTTAA--TTTCTTTGGCTCCAATT-GGATTTCACATTTG-----TTTTTAG >Myotis_myotis TGTC-----------CCATCCT------------------------CATCAGGGGGGT-GTTTTGGTTACACTTCAT--- TGAACAACTATA-----------TTTTTATT--------------------GAGGTATAACTGACATAC-AACCTTACAT TCGTTTCAAGTGTACAGCATCATGATTCAATATCTGTATACATTGCAAAATGATCACTTCAATAAGTGTAGTTA--GTAT GCATTACC-----------ATACATAGTTAC--AGAACATTTTTTTCTTATTTGGAGAACTTTTAGGATCTATTCTCTTA GCAACTTTTAAATATG--CATTACAG---TATTATTCACTCCCATCACCATGCTGTACA-----------TGAGCAACTA TT---GAT-TGCCCATTGAA--TTTCTTCGGCCCCAACT-GGATTTCACATTTG-----TGTTTAT >Rousettus_aegyptiacus TGGTCCCTTCAAGAGCCCTCTT------------------------CATCG-GGGGAT-GTAT-GGTCACACTTAAT--- TGAACAACTGCT-------------TTTATT--------------------GACATATAATTGGCATAC-AGTATTACAT TAGCTTCAGGTGTATGACATAACGATTCAATATTTGTATATATTACAATGCGATCACCACAGTAAGTCTAGGTA--ATAT CCATCACC-----------GTACA--------------ATTTTTTTCTTATTTTCAGAACTTTTAAGATCTATTCTCTTG GTAACTTCTACATATG--CAGTACGG---TAATACTGA-----GCCACCATGCCGAACA-----------CCAATAACTG TC---CAT-TTTTCATTGGC--TTTCTTTGGCTCCAGTT-GGATTTCACATTTG-----TTTTTAG >Sus_scrofa TGGTTCCCTCCAGAATCCTTTT------------------------CATCA-AGGCCT-GTTTTGGTGACATTCTAT--- TGAACAACTGTT-------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----GAA-TTTCCATTTAA--TTTCCTTGGCTCCAGTT-GGATTTCACATTTG-----TCTCTAG >Tursiops_truncatus AGGTCCCCTCCAGAGTCCTGCT------------------------CATCA-AGGCCT-GTTTGGGTGACACCTTAT--- TGAGCAACTCTT-------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----GG--TTTCCATTTAA--TTTCCTTGTCTCCGTCT-GGATTTCACGTTTG-----TCTTTAG >Condylura_cristata TGGACCCCTTAAGAGCCCTCCT------------------------TATCC-GGGA--------GGTTA-ACTTCAT--- GGAAGGATTAAT-------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----GATGTTTCCATTAAATTTTTCTTTGAGTCCAGTT-AGATTTCACATTTATTTATTTTTTGG >Sorex_araneus TGGGCCC--TACAAGCCCTCCTAGACCCCCCCGCCACCCCCACAAAAATCC-AGGGTTGGTTTTGGTTACATTTCAG--- CAAACAACTATT-------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----GAT-TTTCCATTGAG--TTTCTTTGGCCCCAGTTGATTTTTCACGTTTA-----TTTTTAG >Homo_sapiens TGAGCCCCTCGAGAGCCCTCCT------------------------CACCT-AGGACT-GTTTGGGTTATACTTTAC--- TGAACAACTGTT-------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----GAT-TTTCTACTGAA--TTTCTTTGGCTCCAATC-AGACTTCATATTTA-----TTTTTCA Bat121_LINE >L1MA9_3END -------------------------------------------------------------------------TGGATGA ACCTGGAGGACATTATGCTAAGTGAAATAAGCCAGGCACAGAAAGACAAATACTGCATGATCTCACTTATATGTGGAATC TAAAAAAGTCAAACTCA-TAGAAGCAGAGAGTAGAATG----GTGGTTGCCAGGGGCTGGGGGGT--GGGGGA------- -AATGGGGAGATGTTGGT--------------------------------------CAAAGG-GTACAAAGTTTCAGTTA TGCAGGATG----------------------------------------------------------------------- -----------------------------------------------------------------------AATAAGTTC TGGAGATCTAATGTACAGCATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTA--AG-AGAGTAGA TCTTAAGTGTTCTCAC-CA------------------------------CACACAAAAAAAT-------GGTA-ACTATG TGAGGTGAT-GGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTA CACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA----------------------- --------------------------------------------------------------------- >Canis_familiaris TGGCATATAGTATATGCCAAAAAGCTGTGGCTCATATGGTCTCCACG-CATT---AAAATGGAACC-TTA---------- ---------ACATTTTGCTAAGTGA--TAAATCTGACAGGGAGAGGCAAATACTGTGTAATCTCACTTATACATGGAATC TAATAAAGCCAACCTCA-TAGAAATAGAGAGTACGCTG----GTGGGTGCCAGGGCCCAAGGGATAGGAGGGA------- -AAT-AGAAGATGTTGGTTAAAGGGCAAAAACTTAAAAAAAAAAAAAAAAAAAAAACAAAGG-ACACAAACCTCCAGCTA T--AAGCTG----------------------------------------------------------------------- -----------------------------------------------------------------------AATAAATTC TGAGGATCTGATGGGCAGCACAGTGACTATAGTAAACAATACTGTCTTATGTACTTGCAAGTTGTTA--AA-AGAGTAGA TCTGAAATGTTATCAC-CATGCA----------------CACACACACACACACACACACAC-------GATG-ATTATG TGAGAGGACAAGAAGTGTTAATTAACTTTATAGTGGTAATCATTTTGCAACATGTACGTG------------------TA CACCTTAAACTTACATA--TGTTATA--TCAATAATATCGCAATAAAGCTAGG------------GGGAAGGACCC-TTA ---AA---AAAACAAAAC--CAAAGCAAGACATGTTATCATTCTA--------------CAGCCACCTG >Felis_catus TGGG-------------CAAAAAGCTGTGGCTCAAATGGACTCCAAGATATT---AAAAAGGAGCC-TGA---------- ---------ACATTTTGTTAAGTGAAATAAATCATACACAGAAAGGCAAATACTGTACGATCTCACTTATATGTGGAATC CAATAAAGCAAACCTGA-TAGAAATAGAGAATACGTTG----GTGGTTGCCAGGGCCCGAGGGGT---GGGGA------- -AAT-GGGAGATGTTGGT--------------------------------------CAAAGG-GCACAAACTTCCAACTA T--AAGATG----------------------------------------------------------------------- -----------------------------------------------------------------------AGTAAGTTC TGGGGATCTGATGTGCAGTATAATGACCACAGTTAACAACACTGCCTTACGTACTTGAAAGTTGTTA--AAGAGAGGAGA CCTTAAGTGTTATCAC-CATGCATGAACTTGTGCACATGCACACACACGCACACACACACACATACAATGATA-ATTATG TGAGGGGAT-GGAATGGTTAACTAA--------GGGTTAACATTTTGCAATATATATGTGTATAAAGTCATCACGTTCTA CACCTTAAACTTACATA--TGTTATATGTCAATAATATCTCAATAAAACTGGGGGGAGGGGT---GAAAAGGACCC-TTA ---AA-AAATGTCAAAAC--A--------------------------------------CAGCCACCTG >Manis_pentadactyla TGGCGTATAGCATTTGCAGAAAAGGTGTTGCTGCAATGGACCCCAAG-TATT--GAAAAAGGACCC-TTA---------- ---------ACACTATGCTAAGTGACTTAGGTCAGACAGAGAAAGATAAATAGTGCATGGTCTCACTTTTATGTGAAATC AACAAAAACTGAACT---TAGTAATAGACTAGAT-TTG----GTGGCGGCCAGGGGCTGGGGAGC--AGGGAA------- -AATAGGGAGATGTTAGT--------------------------------------CAAAGG-GT-TAAACTTCCAGTTA T--AAGATGAATTCTTTCTGAGAGTGAGCACTTAATATTGTAGACAACTGTCAAAATATTTATGTTGTACACCTGAAACT AATATAATATTGTCTATCAACTATATGTCAATAAAAAAATGAACAAATAAAAATAAAAATAAAATAAAATAAATAAGTTC TGGGGATATAACATACAACATGGTGACTATAGTTACCCATACTGTATCATATATTTGAAACTTTGTA-----AGAGTAGA TCTTAAATGTTATCAG-CA--------------------CACGTGCGCACACACACACACA--------GACA------- --AGAG----AGAGGTGTTAACTAACCTAATTGTGGTGATCATGTCACAGTACATATATA-----AATCATTACATTGTA CAGCTTAA-CTTACATG--TGTTACCTATCAATAATATCTCCATAAAGCTGGGGG----------GGAAAGGACCC-TTA ---AA--AACCATAAAAT--CACAGAAGGACATCTCATCAGTCCA------------------------ >Myotis_myotis TGGTGTATAATAAACGCCAAAAAGCTGTCGCTGAAATGAACCCCAAC-TATT---TAAAAAGGCCTCTTA---------- ---------ATATTATGCTAAGTGA----AGTCAGACAGAAAAGGACAGATACTGTATGATTTCACTTACATGTGGAATA TAGAAGACCCAAACTCA-CAGA--CAGAGAGTAGATGA----GTCGTTGCCAGGAGCTTGTGGGGATGGGGGGCCGAGCA TAATGGGGGGATGTTGGT--------------------------------------CAAAGG-GTACAAACTTTCAGCTA T--AAGATG----------------------------------------------------------------------- -----------------------------------------------------------------------AATAAGTTC CTGGGATCTAATATACAGCATGGTGAGTATAGTTAACAACACTGTATTAGATACTGGAAAGTT-TTA--AG-AGAGTAGA TCTTAAATGTTATCACACA---------------------------ACACACATACAAATTAGAAAAGTGATACGTTATG TGAGGGGAT-GGAGGTATTAACTAACCTTATTGTGATCATCATTTTGCCACATACATACATATCAAATCATCACCTTGTA CACCTTAAGCTCACATA-------------AGTTATATGCAAATAAAGATAGG------------GGAAAGGACCC-TTA ---AA-AAGCCATAAAAC--CATAGCAGGACATCTTCT---TCCA--------------CATGCACCTG >Rousettus_aegyptiacus TGGTGTGTGCTAAATGCCAAAATGCTGTTGCTGAAACGGACCTCGAA-TATT---TAAAAGGACCT-TTA---------- ---------ACATTACGCCAAGTGAAGTAAGTCAGACAAAGAAAGACAAATGCTGTATGATTTCACTTACACGTGGAATC CAAAAAAGCTGAACTCA-CAAGAACAGAGAATAAGTAGCCCAGTGGTTGTCAGGGGCTGAGGGGG-TGGGGGA------- -AATGGGGAGATGTTGGT--------------------------------------CAAAGG-GTAAAAACTTTCTGTTA T--AAGATG----------------------------------------------------------------------- -----------------------------------------------------------------------AATAAGTTC AAGGGATCTAACGTACGGCATGGTGAGTACGGTGAACGAAGTTGTACTATGTACTTGAAAGCT-TTA--AG-GGAGTAGA TCTTCAATGCCATCGC-CA------------------------------CACACAAAAAAAT-------GACA-GTTACG TGAGGGGAT-GGAGGTATTAACTAACCTTGCTGCGATGATCATTTCACATTATATATGTGTGCTGAATTATCACCTCGTA CACCTTAAACTTACATA--TGTTATATGACAACACTAGGTCGATAAAGTTGGGTG----------GAAAAGGGCCC-TTA ---AC-AAAACGTAAAAC--CATAGCAGGACATCATATCATCCCA--------------CAGCCACCTG >Condylura_cristata CAGAGGGCCAAACACACCAAAAG------CCACAGACAGCGCCCAAG-CCTT---CAAAAGGACCC--TA---------- --------------------ATTGA-ACAGGTCAGACAAGGAAGGATGTCCACGCCGTGGTGTCACCAACATGGGGCACA GGGAGGACTCTAACGCACCCAAAGCAGAA-------------GCTGCTGGCAGGGC----AGGGCCTGGGGGC------- --ATGGGGAGACGGCGGT--------------------------------------CAAGGT-ATAAACTCTTCCAG--- TGCAAGTCC----------------------------------------------------------------------- -----------------------------------------------------------------------AGTAAGTTC T-GAGATCAAATG----ACATGTGGGCTGAGGTTAACAGCATTATCATTTGTATCGGCATTTGAATATTTGCAGAGTAGA GCT-AAATGTTATATC-TA------------------------------TCCGCACACAGT--------GATA-ATCATG TGAACAGA--GGGGCTGCTAACTGACCCTACTGTGGACATCATTTTGCAATGCACGCATGT-CCTAATCATCACGCTGTG CCCCAAAAGCTGGCATC--TATCATCTATCAACAGGATCTCAATAAGGTTGGGGA----------GAAAAGGGCCC--TA ---AG---AACATGCAGCTACTTAGCAGGTCATCTCATCCCTCTG--------------CAACCACCCG >Scalopus_aquaticus CAGGGTGCCATGGAGACCAAAAGGC--------------TGACCAAG-CGTT---AAAAAGGACCC--TA---------- --------------------ACTGA-ATAAGTCAGACAAAGACAGACATCTACCACGTGATGTCACTGACACGTGGCATC AAAAGAAACCCAAGTCA-CAGAAATAGAGAGCTGAATG----CTCTTGACCAGGGC---AGGGGCAAGGGGGA------- ----TGGGAGATGCTGGT--------------------------------------CACAGGTACAAAGTCTTCTAGGTA T--AAGACC----------------------------------------------------------------------- -----------------------------------------------------------------------AGCAAGTTC T-GGGATCTAATG----ACATGTGGACTGTACCTAATAACATCATTATTTTTATTAGTA-TTTGATATCTGAAGAGAGGA TCTTAAATGTTATACA-TA------------------------------TACACACACAAT--------GATA-ATCATG TGAACGGAGAGGAGGTGCTAACTGACCCTATTGTGGGCATCATTTTGCAATGCATGCATGTATCAAATCATCATGCT-TA CCCCTTTAACTGACATA--TATTAAATATCAATAATATCACAATAAAGTTAGGGA----------GAAAAGGACCC-AAA ---AG---AACATAAAACTATATAGCAAGACATCGCATCACTCAA--------------CAGTCACCCG >Sus_scrofa TAGTGTTTTGTCTACACCAAAGAGCTGCTGCTGAAATGGACCCCAGG-TATT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------AAAAAGGACCTTTTG ---TAGAAACCCTAAAGC--AATAATTGGGCTGCTTGTTCCGCCCAACCCCCCCCGCCCCCCACCCCCG >Bos_taurus TGGTGTTTTGTAAATGCCAAAAAGCTGTGTCTGAAATGACCCTCCCGCATAT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------CAAAAAGACCT-TTA ---TA-AAACCCTAAAAC--AATAACAGGGCATCTTAT---TCCACCCAACCTAGCCCCCAGCTTCCTG >Equus_caballus TGGTCTATAATATATGCCAAAAAGCTGTTGCCAAAACAGACCCCAAG-GATT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------AAAAAGGACCC-TTA ---TA-AAACTATAAAAC--CATAATAGGACATCTTATTATTCCACCCAACCTAACCCCGGGCCACCTG >Ceratotherium_simum TGGTCTGTAATATACACCAAAAAGCTGTTACTAAGACAGACTCCAAG-TATT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------AAAAAGGACCC-TTA ---TA-AAACAATAAAAT--CATAGTAGGACATCTTATCATCCCACCTTACCTAACACCCAGCCACCTG >Homo_sapiens TAATGTACAGTATATACAAAAAAGCTGTTGCTAAAATGGAGCCCAAG-TATT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------AAGAAGGACCC-TTG ---AC--AAACAGAAAAC--CATAGTGGGACATCTGATCATTCCAGCCAACCTAAACCCCAGCCATCTG Bat125_LINE >L1MA9_3END -------------------------------------------------------------------------------- --------GTGTTCTCACCACACACAAAAAAATGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTA ATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATAC CTCAATAAAGCTGGAAAAA------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- - >Canis_familiaris GATTTGAACCCTGA----CTAGGGGT------------------------------TAAACTAGGCT---AAAA------ AGGGG----------------AATTTTTTAAATTGTATCTATAGGAGATGATGG--ATGCCAGCTAAATGCATTGTGGCA CTCATTTCAGAG--TATATGTAAACCAAACTATTATGCTGTATACCTT--ACTTATACAG-TAATATATGTCAACT-TTT CTCAACAAAACTGGAA----------------AAAATCTTTTTGCCCAGAAAAAAA---AAGTAATAAAGAAAGAA---- -----TGCA-TCCTAGTAGGAGAAACAGAAATATAAAAAAATA-------ATTAAAATGCAGGGCACATGGATGGCTCAG TTGGTTGAACTGCTGACTTGATTTTAGCTCAGGTCATCACCTCGGGATCAGGCTTTGCACTCTGTTTGGGATTCTCTTTC ATGCTCTCCCTCTGGCCCTCCCCCACCCCATTCATGCATGCACTCCCTCTCTCTCTCTCTCTCTGTGCCAAATAAACAAA TCTTCTAAAAAATAATTAGAATGTA------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------ATGCTTTGGGAGCA T >Felis_catus GATTTGAACCCAGGTGATCTTGTGATCTGGCCATAGACTCCTGTTCTTCACT-CTATAAACTAAGCT---TAAC-AAATA AGGGA----------------TTTTTTTTTTATTGTATCTAAATGGGATGATAG--ATGCTAGCTAAATTTATTGTGGTA CT-ATTTCATAG--TATATGTAAACCAAACTATCATGCTCTACACCTTAAACCTATGCAG-TGATAGATATCAATTATTT CTTAATAAAACTGGAA------TTTTTATTTTTTATTTTTTTTGCCCAG----------AGAAAATAAATAAAAGA---- -----TGCA-TTCTAGTAGGGGAAACA--AATGT-AAAAACGA-------ATTACAATGCA------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------ATGTA------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------ATGCTTTGGGAGCA T >Manis_pentadactyla GATTTGAACCCCG--------GTGGTCTGGCTTCCAAGCCCTGCTCTTCCCT-CTACAAACTGCGCT---AAAA-AAATG AAGGG-------------GTATTTCTTTT-TATTATATTTATGTGAGATGATGG--ATGCTAAGTAAACTTATTGTGGTC ATCATTTCACAA--TATATTTTAATTAAACCATCATGCTGTATGCCTTAAATGTACACAG-TCATATATGTCAATTATTT CTCAATAAAACTATAA--AA-----TGAATAAACAGTTTTTT--CCCAG----------AAA----AAATAAAGGG---C TGTTTCCCA-TTCAAGTGGGGGAAACAGAAATGT-AAAAAATA-------ATTAAAATGGA------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------ATGTA------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------ATGCTTTGGAAGCA T >Equus_caballus AATTTGAATCCAG--------GTGGTCTGGCTTCAGAGCCCTGCTCTTTACT-CTACAAACTAGGCT---AAAAAAAATA AAGGA----------------TTTCTCTT-TATTGTCTCTATATGAGATGATAG--ATATTAACTAAATCTATTGTGGTA ATCATTTCAGCA--TATATGTAAATCAAACCATCATGCTATATACCTTAAACTTATATAG-TGATATGTATCA----TTT CTCAATAAAACTGGGA--AAAAAATTAAAAATAAAGCTTTTT--CCCAGAAAATA----AATAAATAAATAAAGGA---- -----CGCT-ATCTAGTGGGGGAAACAGAAATGT-GAAAAATA-------ATTAAGATGCA------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------ACGTAGGGGCCAGCCCCGTGGCCGAGTGCTTAAGTTCGCCTGCTCCACTTTGGCGACCCA GTGTTCACCAGTTAAGATCCTGGGTGCGGACCTACACACTGCTCATCAAGCCTCACTGTGGTGGTGTCCAACATAGAAGA ACTAGAATGATCTACAACTAGGATATACAACTATGTATTGGGGCTTTGGAGAGAAAAACAAAAAAAGGGGGGGGAAGATT GGCAACAGATATTAGCTCTGGGCCAAACTTCCTCACCAAACAAACAAACAAACAAAATGCAATGTAATGCTTTGGGAGCA T >Ceratotherium_simum GATTTGAACCCAG--------GTGGTCTTGCTTCAGAGCCCTACTCTTCACT-CTACAAACTAGGCT---AAAA-AAATA TAGGA----------------TTTCTTTT-TATTTTACCTATATAAGATGATAG--ATGTTAACTAAACCTGCTGTGGTA ATCGTTTCACAA--TATGTGTAAATCAAACCATCGTGCTGTACACCTTAAACTTATACAG-TGATGTATATCAATTATTT CTCAATAAAACTGGAA--AAAAA--TAAATAAACAGTTTTTG--CCCAGAA--------AATAAATAAATAACGGA---- -----CACA-TTCTAGTGAGGGAAACAGAAATGT-GAAAAATA-------ATTAAAATACA------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------ATGCA------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------ATGTTTTGGGAGCA T >Myotis_myotis GTTTGGGACCCAG--------GTGATCTGGCTTCCAAGCCCCACTCTCGACT-CTAAAAACTAGGCT---ACAAAAACCA CAGG-------------------------------------------ATGATGG--AGGTTAACTAAACCTATTGTGGTA ATCACTTCACAA--CACATGTGAATCAAGCCATCATGCTGCACTCCTTATACTTATACAG-TGATGTATGTCAATTATTT CTCAATAAAACTAAAAGTAAACTAAAAAATAAACAGGCTTTT--CCAAA----------AAAATAAAAATAAAGAA---- -----TACA-CTCTAGTGAGGGAAACAGAAATGT-AAAAAATA-------ATTAAAATACA------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------ATGTA------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------ATGCTTTGGCAGCA T >Rousettus_aegyptiacus GATTGGAACCCAG--------GTGATCTGGCTTTAGAGCCTTGCTCTCCACT-CTATAACATAGGCT---ATGA-AAACA AAGGA-------------TTCTTTCTTTTCTATCTGCATGAGATGAGATGATAA--ATGTTAACTAAGCCTATTGTGGTA ATTATTTCACAG--TGGACGTGAATCAAACCATCACGCTGTACACCTTAAACTTACACAG-TGATATATGTCAATTCTTT CTCAATAGAACTGAAA--GA-----CAAAATAACAGGTTTTTTCCCCAATA--------AATAAATAAATAAAAGA---- -----TACATTTTTAGTGGGGAAAACAG---TGT-AAAA-----------GTTAAAATGCA------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------ATGTA------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------ATGCTTTGGGAACA T >Sus_scrofa GATCTGAACATAG--------GTAGTCTGGCTTCGGAGCCCTGCTCGTCACC-CTACAAACAAGGCT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------AAAAAAAAAATAAAGGA---- -----CACA-TTCTGGTGGGGAAAACAGAAGTGGAAAAAAAAAAAAAAAGATTAAAATGCA------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------AGGCA------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------ATGCTAAGGGGGCA T >Bos_taurus GATTTGAACCCAC--------ATAGTCTGGCTCCAGAGCCCTCCTCTTCACT-CTGCAAACTGGGCT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------AATAAATAAATAAAGAA---- -----CATA-TACTAGTGGGGGAAATAAAAATGT--AAAAATA-------GGTAAACTGTA------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------CTGTA------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------ATGTTATGGGAACA T >Condylura_cristata GACCTGAAGCCAG--------GTGGCATGGC-ACTGAGCCCGCCTCTTCACT-TTATAAACCAGGAG------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------AAAA---AGCTAAAAGG---- -----CACA-TTCTAAT--GAGAAGCAGAGGC---AAAAGAAA-------ATTAAAATGCA------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------ATGTA------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------ATGATACGGCACCA A >Sorex_araneus AGCCTG---------------GTGGATAGGC--AGGAGTATTGCTATTTTTTCCTGCAGACTAGACT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------CAAA---CAGTAAAGGA---- -----CACA-TTCTAATGGGGGAAGCAGGAGTGT-AAAAAACA-------GTGCAAGTGCA------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------TGTG------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------GTGAT-------CA T >Cavia_porcellus AATTTGCACTCAG--------GTGACCTGGCTTCAAAGCCCTGCTTTCAACT-CTATAAGCTAAGCT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------ATAA----GAAAAAGGA---- -----CACG-TTCTAATGCGAGACA-AAAAATGTAAAAAAAAA-------ATAATAATTCAA------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------ATGCA------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------GTG-----GGAGTA T Bat129_LINE >L1MA9_3END --------------------------------------------------------------------------TTTTTC CAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATATACGTATAC ATTGTGAAATGATTACCACAATCAAG------------------------------------------------------ --------------------- >Canis_familiaris TGTATTCAGAG--TTGTTTATGATCTTTGGCTGTCTGCTCTAAAGGAAACTT---GAAAAA--CT-------CCTTTTCT AAGTTTTATGGAGATGTAATAGACACTT-AACACCACATAAGTTTAAGATGTACGGCTCAATGACTCGACTTTC--ATAT ATGGCG-AATGGTTG--------------AGAAAACT----CAGTCTTGACTC--GAGCACAAAAGTGTGACATTGTAAA ATTAAG----TATTTGGGGGG >Felis_catus TGTATGCAGAG--TTGTTTATGATCTTCGACTGTCTGCTGTAATAGAAACCT---AGAAAA--AC------TTCTTTTCT CAGTTTTACTGAGATATAATTGACAC---AGCACTGCACAAGTTGAAGGTGTGGGGCACAGTGACTTGACCTTC--AACT GTTGTG-AATGATTG--------------AGAAACCT----CAATCTTTACCCACGAACACAAAAGTGTCACATTTTAAA ATTAAGTAATTTGGGGCGGGG >Manis_javanica TATGTAGAGAG--CTCTTTATGATCTCAGGCTG-----TCTAAAAGAAGTGT---AGAAAATGCT------TTTTTTTCC CAGTTTTATTGGAATACAGTGGACATAC-AGCACTATATAAGCTTAAGGGGTGTAGCATAGTGACTCAACATAC--ATAG ACTGCAAAATGATTA--------------AGAAAACT----CAATCCTGACCCAGGAACTCAAATGTGTGAAGGTTTACA GTTAA--------CTGTGGGA >Sus_scrofa TGTATGCAGGGAATTGCTTCTGATTTTAGGCTGTCTACTTCAAAAGAAACTT---AGAAAA--CT---CTTTTTTCCCCT CAGTTATATTAAATTATAATGATCATAT-GGCACTGCA-GAGTTTAAGGTGTTAAGCATCATATATTGATATCC--ATAT ACTGGGAAATGATTG--------------AGAAAACT----CAATCCCCAAAAAAGAATGCAAATGTGTGAAGGCTTAAA ATTCAG----TAAGCATGAGG >Bos_taurus TGTATGCAA------GTTTCTGATCCTAGGCTGTCTACATCAAAAGAATCTA----------------------TTTTTT CAGCTGTATTGAATTATAATTGACATAG-AGCACTGTGTGAGTTTAAGATGTACAGCATAATGTATTGATGTAC--AAAT ATTGGGAAATGGTCA--------------AGAAAACT----CAGTCCCAAAGAAAGAACACAAATGTGTGAAGGATTAAA ATTAAA----TAACTGTGGGG >Myotis_myotis TGTATGCAGAGAGCTGTTAATGATCTTAGGCTGTCCACTCTAAAAGAAACTT---AGAAAA--CT--------TTTTTTT CCATTTTATTGAGATATAATTGACATAC-AGCACTACAGAAGTTTAAG--------CCTAATGACTTGACATAC--ATAT ATTGTGAAATGATTG--------------AGAA-ACT----CAATCTTAACCCAAGAACACAACTGTGTGAAGGTTTAAA ATTAAG----CAACTGTGGTG >Rousettus_aegyptiacus TATATGTAGAGAGATGTTTAC-CTCTTAGACTGTCTACTCTAAAAGAAACAT---AGAAAA--CT-----TATTTTTTTC CAGTTTTATTGAAATATAATTGACATAC-AGCACTATAGTAGTT-AAGGTAGACAGCACAATGACCTGACATAC--ATGT ATTGTGAAATGATTA--------------AAAA-ACT----CAATCTTGACCCAGGAATACAAATGTATGACAGTTTAAA ATTAAGTAACTAACTGTGACA >Condylura_cristata TTTATGCAGAGAGTTGTTTATGATCTTCCACTGTCTACTCCAAAAAAAACAT---AGAAAA--CT---------TCCCCC CAGTTTTATTGAGCTATAATTGGCATGCAGTCTCTATAAA-------------CCACATAATGA--TGGCATCA------ -------TATGATTG--------------AAAAAAATG---CAAACTTGGCCCAAGAACACAAATGTGTGAAGGTTTAAA ATAAAG----TAGCTGAAGAG >Solenodon_paradoxus CATATGCAGAGAGCTGTGTATGACATCAAACTGTCTACTCCAGATGAAACTT---AGAAAATGCT--------TTTCTTG CAGTTGTATTGAGATACAATTGACATGA-AACCCTGTATAAGTATAAGGTATATGGTGTAATGCCCTGATATAC------ --TGTGAAATGATTG--------------AGAAAACA----TCATCTCTGTCCAAGAACACAAATGTGTAAAGGTTTAAA ATGAAA----TAACTAAGGGG >Equus_caballus TGTATGCAGAGGATTGCTCATGATCTTAGACTGTCCACCCCAAAAGAGACTC---AGAAAA--CT--------------- -------------------------------------------------------------------------------- -----------------------------------------CAGTCTTGACCCAAGAACACAAATGTGTGAAGGTGTAGA ATTAAG----TGACCGTGGGG >Ceratotherium_simum TGTATGCAGAGGGTTGTTCATGATCTTAAACTGTCTACCCCAAAAGAAACTT---AGAAAA--CT--------------- -------------------------------------------------------------------------------- -----------------------------------------CAGTCTTGACCCAAGAACACAAATGTGTGAAGGTTTAAA ATTAAG----TAACTATGGGG >Homo_sapiens TACATGCAGAGAGATGTTTAT-----------------CTCAAAAGAAGCTC---AGAAAA--CT--------------- -------------------------------------------------------------------------------- -----------------------------------------CGATCTTAACTGAAGAATACAAATGTGTGAAG------- ----------TCACCGAAGGA Bat130_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------TTTTTCCAGCTT TATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTG---TACAACGTGATGTTTTGATATACGTATACATT GTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTACCAT------TTTTTTGTGTGTGGT GAGAACACTTAA-GATCTACTCTCTTAGCAAATTTCAAGTATAC-AATACAGTATTATTAACTATAGTCACCATGCTGT- -ACATTAGATCTCCAGAACTTATTCA------------------------------------------------------ -------------------------------------------------------------------------------- ---------------------------------------------------------TCCTGCATAACTGAAACTTTGTA CCCTTTGACCAAC--ATCTCCCCATT-----TCCCCCAC------CCCCCAGCCCCTGGC-------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------ >Canis_familiaris AAAGCAC--TAAATAAATGTTTTTTTACCATTATTATTGAGGA-TACCTAGAAAGCCAAGCA------------------ -------------------------------------------------------------------------------- -----------------------------------------------------TTCTTATTGTTT--------------- -ATTGAAGTATAACTGATAT---AAAATTGTATTAGTTTTAGTTG---TACAAC---ATGAATCAACTTTTGTATACATT ATGAAATGATCACCATT----GTCTAATTAAC--CTCCATCACTATACATAGTCACAGTAATC--TTTTTTTCTTATTAT AAGACCTTTTAA-GATCTATTTTCTTAGCA-CTTTCAAAGATGC-AATGCAGTATTATTAACTCTAGTCACCATGCTGT- -ACATTACATCGCCATAACTTACTTA------------------------------------------------------ -------------------------------------------------------------------------------- ---------------------------------------------------------TTTT--ATAGCTGGAAGTTTGTA CC-TTTGGCCTC---CTTCACACATT-----TCACCCACTCC---CACCCCACCTCTGGCAACCACCAGTCTGTTC-TCT ATATCTAAGAGCTTGGTTTTGTTTTATGTTGTTTTGTGTTTTGTTCCTTGTTTTTTTTTTTTTTTA---TTTTTTATTTT TATTTTTTTTT---AACCATTAAGTATTTGCC-ATGAAGTTCATCAAAGTA-TTTAAAACTCTGGC >Felis_catus AAAGCACATAAAATAGAT-ACTTGTTACCATTATTATTGAGGA-TGCTTAGAAAACCGAGTG------------------ -------------------------------------------------------------------------------- -----------------------------------------------------TTATTGTTGTTT--------------- -ATAGAGAT----CTGATAT---AAAATTTTATTAGTTTTGGGTGT--CATGACACAATGATTCAATATTTGTGTACATT GAGAAATGATCATCACCA-AAGCCTAATTAAC--CCCCATCACTGTACATAGTTGTACAAATT--GTTTTTTCTTATTAT GAGAACTTTTAA-GATTTGTTCTCTTAGCAACGTTCAGATATGC-AGTGCAGTATTACTAAGTATAGTCACCATTCTAT- -GCATTAAATCCCAGTGACTTATTCA------------------------------------------------------ -------------------------------------------------------------------------------- ---------------------------------------------------------TTTT--ATAACTGTAAGTTTGCA CC-TTTGACCCC---CTTTACCTATT-----TCATCCACTT-----------------------ACCAGTCTGTTC-TCT GTATCTAAGAGCTTGGTTTGGTTTGGTTTTGTTT-----------------------------------TTGTTCTTTGA TGTTTTTTTTT---AACTATTAAGTATTTGCC-ATGAAA-TCAT-AAAGTA-TTTAGAACTCTGGC >Manis_pentadactyla NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGCCTAGAAAACCAAACT------------------ -------------------------------------------------------------------------------- ---------------------------------------------------TTTTTTTTTTCTTC--------------- -TTTGAGGTACAATTGGCATAT-----------TGGTTTCAGATG---TACAACATAATGGTTTGATATTTGTATACATT GCAAATTGATCATCACAATACTTGTAGTTACT--GTCTGTCACCTTGCATAATAACAAAAAATATTTTTTTTCTTGTAAT GAGGACTTTTAA-GATCTACTTTCTTAGCAATTTTCAAATATGC-CATACAATATTATTAACTATAG--ACCCTTCTGT- -GCATTATATCCCCATGACTTATTTA------------------------------------------------------ -------------------------------------------------------------------------------- ---------------------------------------------------------TTTT--GTAACTGGAGTATCTTA CCATTTGGTCCT---CTTCACCCATT-----TCTCCTGTTTCCTACCCACTGCCTCTGGCACCTATCAGTATATTC-TCT GTGCCTACGAGCTTGGGGCGGGGGAGTTGTTTAGGTT--------------------------------TTTTTTTCTTT TTTTTTTTTTA---AACCATTAAGTATTTACC-ATGAAGTTTATCAAAGTA-TTTAAAACTCTGGC >Sus_scrofa AAAACAC--TAAATGAGT-ATTTGTTAACATTA---TTGAAGAATGCTCAGAAAACCAAGTG---CATTGTTGCTGTTGT TGTTGTTTTGGGGGTATACCCAACCGCATGGGAAAGTTCCCAGGTCAGGGATCAAACCTGTGCCACAGCTGTAACCAGAG CCACAGCGGTGACAACACTTAACCCTTGGAGCCATGAGCGAAGTCCTTTTTTTTTTTTTTTTTAA--------------- -ATTGAGGTGTAGTTAATATAT-AACATTGTGTTTGTTTCAGATG---TACAACATAATGATCCAATAT-TGCAAACATT GCAAAAGGATCATCCCAGTAAGTCTACTTAAC--ATCCATCCCCCTACATAGTTACAAAACAG--TTTTTTTCTTGTGAT GAGAACTCTTAA-GACCTACTCT-TTATCAATTTTCAAATAGGC-AGTACAGTATTATTAACTACAGTCACTCTGCTATT -ACATTACATCCTCAGAACTTATCTG------------------------------------------------------ -------------------------------------------------------------------------------- ---------------------------------------------------------TCTT--ATAATTGAAAACATGTA CCCTTTCACCTCC--CTTCATCCATTTC---TCTCCCACCCTCA-CCCCCTGCTTGTGGCAAC-AAAAATCTTTTC-TAT ATTCCTTGGAGCTTGTTTT--------------------------------------------------TTTGTTTTGTT TTTTGTTTTTA---AACTAT-AAAGATTTACCTGTGAAGTTCGTCAGAGTA-TTTAAAACTCTGGT >Tursiops_truncatus AAAACAC--TAAATAAAT----ATTTAACATTATTATTGAAGAATGCCTAGAAAACCAAATA------------------ -------------------------------------------------------------------------------- -------------------------------------------------TTGCTTTTTTTTTTAA--------------- -ATTGAGGTATAGTTGATATAT----AGCATATTAGTTTCAGGTG---TAAAACATAATGGTCCAATAT-TGTACACATT GCAAAATGATCACCACAATAAGTCTACTTAAC--ATCCATCCCCTTACATGGTTACAAAACA---GTTTCTTCTTGTGAT GAGAACTTTTAA-GATCTACTCTTTTAGCAACTTCCAAATATAC-AATACAGTATTATTAACTATAGTCACCCTGCTGTT AACATTACATCTCCAGAACGTATCTA------------------------------------------------------ -------------------------------------------------------------------------------- ---------------------------------------------------------CCTT--ATAATTGGAAGTTGGTA CCTTTTGACCCCCTTCTTCATCCATT-----TCTCCCACCCTCA-CCCACTGCTTGCGGCAACGACTAACCTGTTC-TCT GTATCTATGAGCTTG----------------------------------------------------------TTGTTGT TGTTTTTTTTA---AACCATCAAGTATTTACC-ATGAAGTTCATCAAAGTA-TTTAAAACTCTGGT >Equus_caballus AAATCAA--TCAGTAAAT-ATTTATTAACATTGTTATTGAAGAATACCCGGAAAATCAAGTG------------------ -------------------------------------------------------------------------------- -----------------------------------------------------TTTTT---------------------- --------TATAATTGACATAT-AACGTTATATTAGTTTCAGGTG---CAAAACATAATGATTCCATGTTTGTATACATT GTGAAATGATCA---CAATAGGTCTAGTTAAC--ATCCGTCACCTTACATAGTTACAAAACTTTCTTTTTTTCTTGTGAT GAGAACTTCTAA-GATCTACTCTCTTAGAAACTTTCAAGTAGGC-AATACAGTAT---TAACTGTAGTCACCAGGCTGT- -ACGTTGCATCCCCGTGACTTACTTA------------------------------------------------------ -------------------------------------------------------------------------------- ---------------------------------------------------------TTTT--ATAACTGG--GTTTGTA CCTTTTGACCCC---CTTTACCCATT-----TCTCCCA-------CCGCCTGCCTCTGGAAACCACCAATCTGTTT-TCT GTATCTATGAGCTTTA---------------------------------------------------------------T TTTTTTGTTTT---AACCATTAAGTATTTACC-ATGAAGTTCATCAAAGTA-TTTAAAACTCTGGT >Ceratotherium_simum AAATCAA--TCGATAAAT-ATTTGTTAATATTACTATTGAAGAATGCCCAAAAAACCAGGTT------------------ -------------------------------------------------------------------------------- ---------------------------------------------------------TTTTTTTT--------------- -ATTGAGGTATAATTGACATAT-AACGTTATATTAGTTTTGGGTG---CAAAACATAATGATTCCATATTTGGATACATG GTGAAATGATCAC------AAGTCTAGTTAAC--ATCTGTTGCCTTACATAGTTACAAAAATTTCTGTTTTTCTTGGGAT GAGAACT-TTAA-GATCTACTCTCTTAGCAGCTTTCAAATATGC-AATACAGTAT---TAACTATAGTCATCATGCTGT- -ACATTACATCCCCATGACTTATTTA------------------------------------------------------ -------------------------------------------------------------------------------- ---------------------------------------------------------TTTT--ATAACTGGAAGTTTGTA CCTTTTGACCCC---CTTCACCCATT-----TCTCCCA-------CCCCCTGCCTCTAGAAACCAACAATCTGTTC-TGT GTATCTATGAGCTTTG---------------------------------------------------------TTTTTCT TGTTTTATTTT---AACCATTAAGTATTTACC-ATGAAGTTCATCAAAGTA-TTTAAAACTCTGGT >Myotis_myotis AAAGCAC--TAAACA--------TTTAACATTATTATTGAAGAATGCCTAGAAAAGCAAGTG------------------ -------------------------------------------------------------------------------- -------------------------------------------------------GTATTTTTAA--------------- -ATTGAGCTATAATTGACATAT-AACATTATATTAATTGCAAGTG---TACAAC---ATGATTCGATATCTGTATACATT ATGAAATGATCATCACAATAAGTCTAGTTAAC--ATC-ATCACATTACA-------AAAAGTT--TTTTTTTCTTGTGAT GGGAACTTTTAA-GGTGTACTCTC--AGCAACATTCAAATATGTAAATACAGTATTATTAAGTATAGTCACCATACTGT- -ACATTGCATCACCATGACTTTTTGTTTAATTGAATTTTAGACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGATTGATTTGTTGTTCTACTTATTTATGCATTCTGACTAGGGATGGAACCTGCAACCTTGGCAT ATCTGGACTATGCTTTAACCAGCTGAGCTACCCAGCCAGGGCATGACTTGTGTGTTTTTTTAAATAATTAGAAGTTTGTA CCTTGTGACCCTC--CCCCACACACTCCCATTTTACCACTTCC--CATCCCATCTCTGGCAGCTACCAATCCGTTCTTTT GTATCTCTGAGTTTG---------------------------------------------------------------TT GGGTTTTTTTA---AGTCATTAAGTATTTACC-ATAAAGTTCATCAAAGTA-TTAAAAACTCTGGT >Rhinolophus_ferrumequinum AAAGCAC--TAAGTAAAT-ATTTGATAACATTATTATTGGAGAATGCCTAGGAAAGCAATTT------------------ -------------------------------------------------------------------------------- ------------------------------------------------------TATTTTTTTAA--------------- -ATTGAGGTATAATTGACATAT-AACATTATATTAGTTTCAAGTGTACTACAACGTAACGATTCAATATTTGTGTACATT GTGAAATGATCA---CAATAAATCTAGTTCAC--ATCTGTCACATTACAGG------TAAAAAAATTTCTTACTCGTGAT GAGAACGTTTAAAGATCTACTCT---AGCAACTTTCAAATATGC-AATACAGTGTTGTTAATGACAGTCACCATGCTGT- -ACATTATATTTCCAGGACTTNNNNN------------------------------------------------------ -------------------------------------------------------------------------------- ---------------------------------------------------------NNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNN---------------------------------------------------------------NN NNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Condylura_cristata AAAGCAC--TAAATAATT-ACTTGTTAACGTTATTTTTGAAGAATGCTTTGAA-----CTTA------------------ -------------------------------------------------------------------------------- ---------------------------------------------------------------TT--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------TACC----ATTATTTACC-ATGAAGTTCATCAAAGTA-TTTAAGACTCTGGT >Sorex_araneus AAAGCAC--TTAATTATT-TTTTGTTAACATTATT-TTGAAGAATGCCTAGAAA----TTTA------------------ -------------------------------------------------------------------------------- -----------------------------------------------TTTGTTTTGTTTGTTTGT--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------TTCCCTGAAGTATCTGCC-ATGAAGTTCATCTAAGTATTTTAAAACTGCACT >Homo_sapiens AAAGCAC---TAATAAAT-ATTTCTTAACATTATAATTGAAGAATGACTGGAAAGCCAAGTG------------------ -------------------------------------------------------------------------------- -------------------------------------GGCTTTGTTTTTTGTTTTCTGTTGTTTT--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------TAACATTAAGTATATACC-ATGGAGTTCATCAAACTATTTAAAAGCTCTGGT Bat133_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------TAAGTTCTGGAGATCTAATGTACAGC-ATGGTGACTATAGTTAATAAT---ACTGTATTGT A-TACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTC-TCACCACACACA---AAAAAATGGTAACTATGTGAGGTG ATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAA ATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA------------------------------- -------------------------------------------------------- >Canis_familiaris ATTTTATTTTTC----------------TTGTACATAAATTTTGAACATT---AA------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------AAGTTCTTTA-----------------GTAAAGTGCAGC-ACAGTGACTATAGTTAATAAC---ACTGTATTGC A-TGCTTAAAAGCTGCTAAGAGAGTAGATCTTTAAAGATTGTTATGAGGAGAA---AAAAAGT--TAACTATGT--GGTG ATAA--ATGTTAATTAGACTTATTGTGATGATCATTTTGCAGTATATACAAATATTGAATCATTATGTTGGACACCTGAA GCTAATGTAATGTTATTATGTCAGCTCTATCTCA------------------AAGAATTCTCTG---CTTTTTATAAATA CATAATAATTTAGGGGAA--------------------TAAGCCAAGATCAAGAAA >Felis_catus ATTTCATTTTTCTTAAAGTTATAGAGATTTGTCxCATAAACTTA------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----CAAGTTCTTGC------------------TGATGTACAGC-ATGGTGACTACAGTTAATAAT---ACTGTATTGC A-TATTTGAAAGTTGCTAAGAGCATAGAT----AGAGTTTGTTATCAGGATAA---AAAAATTTATAACTATGT--TGTG ATAA--ATGTTAACCAGACTTATTGTGGTTATCATTTCATAATATATATAAATATTGAATTATTATATTGTACCCCTGAA GCTAACATAATGTTTATAAGTCAGCTATATCTCAGAA---------------TAAAGTTCTTTG---CTTTGTATAAATA CA---TAATTTAGGAGAA--------------------TAAGCCAAGATCAAGAAA >Manis_pentadactyla ATTTGATATTTCTTAAGGTTATAGAGAATTATCCATAAACTCTGTACATT---AA------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------AAGGGCTTTT-----------------ATAATGCACTGC-ATGGTAACTGCA-TTAATAAT---ACTGTATTGC A-TATCTGAATGTTGCTAAGAGAATAGATCCTAAAAGTTT-TCATCGGAAGAAA--AATGTTTTCTAACTATATATGGTG ATGG--ATGTTAACTAGACTTATTGTGGTGATCATTTTGCAACATATATAAATATCAAATAATTATGTTGTACAACTGAA ACTAATGT----TTTATGT-CCAGTTATATATTTTT----------------TAAAGTTCTTTG---CTTCGCATAAATA CATAATAATTTAGAAGAA--------------------TAAGCCAAGATTGAGATA >Sus_scrofa ATTTTATTTTTCTTTAGATTATAGATAATTGCCCATAAACTTTGTACATT---AAAAGTTCTTTAGGAGTTCCTGTCGTG GCTCAGTGGTTAACAAATCCAACTAGGAACCATGAGGTTGCAGGTTTGAACCCTGGCCTTGCTCAGTGGGTTAAGGATCC AGTTTTGCCGTGACCTGTGGTGTAGTTTGCAGACACAGCTCAGATCCTGCATTGCTGTGGCTCTGGCATAGGCTGGTGGC AACAGCTCCGATTAGACCCCTAGCCTGGGAACCTCAATATGCCACAGGAGGGGCCCTATAAAAGGAAAAAAGACCAAAAA AAAAAAAAGTTATTTG-----------------GCAATGTATAGC-ATAGTGACTAGATTTAATAAT---ATTGTATTGC ATTATTTGAAAATTGCTGAGAGAGTATATTTTAAAAGTTC-TCACCACAAGAA---AAA-------AAATGCGTGTGGTG ATGG--ACATTAACTAGATTTACTGAGGTGTTCGTTTCATTATGTAAACAAATACTGAATCATTATGTTGTACACCTGAA CCTAATATATTGTT-ATATGCTAATTATACCTCAATTTTTTAAAA-------AAAAGTTCCTTG---CTTTGGGTAAATA CATAATAATTCAGGAGAA--------------------AAAGCCAAGACTGAGAAA >Bos_taurus ATTTCATTTTT---AAGATTATAGAGGATTATCCATAAACTTTGTACATT---AA------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------AAGTTCTTGG-----------------GTGATATGCATC-ATGGTGACTATAGTTAATAGT---ATTATATTAC A-TATATGAAAATTGCTAAGA--TTATATTTTAAAAGTTC-TCATCACAAGAA---AAAAATGTATAACTATGTATGCAG ATAG--TCATTAGTTAGATTTATTGTGATGCTCATTTTACTATATAAACAAATATTGAATTAGTATATTGTACACCTGAA -CTATCATATTGCT-ATATGCTAATTATACCTCATTTTT-------------TAAAGTCCTTTG---ATTTGTGTAAATA CATAACATTTCAGGAGAC--------------------TAATCCAAGACTAAGAAA >Equus_caballus ATTTCATTTTTGTTAAGCTTATAGAGAATTGTCCATAAACTTTGTACATT---AA------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----GAAGTTCTTTG-----------------GTAATCTAGGGC-ATGGTGACTACAAGTAATAAT---CCTGTAATGC A-TATTTAAAAGTTGCTAAGAAAGTAGATCTTAAAAGCTC-TCATCACAAGAAAAGAAAATTTTGTAACTATGTATGTT- -TGG--ATGTTAACTAGACTTACTTTGGTGCTCATTTCACAGTATATACAAATATCAAATCATTAGGTTGTACACCTGAA ACTAATATAATGTT-AAATGTCAATAGTACCTCAATAAAAA-----------GAAAATCCTTTG---CTTTGGGTAGACA CATATTAATTTAGGAGGA--------------------TAAGCCAAGATTGAGAAA >Tapirus_indicus ATTTCTTTTTTGTTAAGGTTGTAGAGACTTGCCTATAAACTTTGTACGTT---AA------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AAAGTTCTTTG-----------------CTAATATACAGCAATGGTGACTACAAGTAATAAT---ACTGTAATGC A-TACTCAAAAGTTGTTAAGAAAGTGGATTGTAAAAGCTT-TCATCACAAGCAAA-AAGTGTTTGTAACTATGTATGTT- -TGG--ATGTTAACTAGACTTACTGTGGTGATCATGTCACAATATATACAAATATCAAATCATTTTGTCATATACCTGAA ACTAATATAATGCT-ATATGCCAACTATACCTCAATAAA-------------AAAAGTCCTTTG---CTTTGGATAAATA CATATTAATTTAGGAGAA--------------------TAAGCCAAGACTGAGAAA >Myotis_myotis ATTTTATTTTTCTTAAGGTAATAGAGAATTGACCATAAGCTTTATACATT---AAACGTTATTT---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------GGTAAGAAAAGAATAA AGAAAAAAGTGATTTG-----------------GTAATGTACAGC-ATGGTGACTACAGTTGATAAT---ACTGTAGTGT C-TATTTGAAAGTTGCTAA----CTAGATCTTAAAATTT-------ATAAGAA---AAAGTTATAAAAC----TATGGTG ATGG--ATGTTAAC-----GTATTGTGGTGATCATTTCACAATATATACAAATATCAAAATATTAGGCTGTGCACCTGAA ACTAATATAATGTT-ATATGTCAATTACACCTAAATTTTTA-----------AAAAGTTATTTG---CTTTGGGTAAATA CATAGTAATTTAGGAGAA--------------------TAAGCCAAAATTGAGAAA >Rousettus_aegyptiacus ATTTCATTTTTCTTAAAATTATAGAGCGTTGTCCATAAACTTTGTACATT---AA------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------ACGTTCTTTG-----------------GTAAAGTACAGC-ATGGCGACTACAGTTAATAATAACACGGTGTGAC A-TATTTGAAATTTGCTAAGAAAGTAAATCTTAAAAGTTC-TCATTACAAGAA---AAA---TTATATCTATGTATAGTG ATGG--------------------------ATCATTTCACAATATATAAAAATATTGA---ATTATGTCATACG-CGGAA ACTAATATAATGTT---ATGTCAGTTATACCTCAATCTTTAA----------AAAAGTTCTTCG---CTTCG-GTAAATA CATAAAAATTTAGGAGAA--------------------TGAGTCAAAATTGAGAAA >Condylura_cristata ATTCCACTTTTCTTAAGGTAGTAGAGGATTGCCTGCAAATTTTGTGTATA------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------AATCATTCTCGG---TGGTGCGTGAATA AATGATATCTTTTAAGAA--------------------TAAGACAAAACTGAAAAA >Sorex_araneus ATTTCATTTTTCTTACTGTTATAGAGAATTGTCTATAAACTTTGTTCGTT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------AAAAGTGCTTTA---CTTTGAACAGTTA TGTAAGAATTTAGGATGC--------------------CAACACAAGATTGAGAAA >Homo_sapiens ATTTCATTTTCCTTAAAGTTATAGAGAATAGCCCATAAACTCTGTGCATT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------AAAAGTTCTTTG---CTTGGGGCAAATA CATAATAATTTAGAAGAATAAGCTTGGAATGCATCAGCTAAGCCAAGAATGAGAAA Bat137_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------TTTTTCCAGCTTTATT GAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATA-TACGTATA---------- -------------------------------------------CATTGTGAAATGATTACCACAATCAAGCTAATTAACA TATCCATCACCTCACATAGTTACCAT------------------------------------------------------ ------------------TTTTT--TGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAAATTTCAAGTATACAA TACAGTATTATTAACTATAGTCACCATGCTGTACATTAGATCTCCAGAACTTATTCATCCTGCATAACTGAAACTTTGTA CCCTTTGACCAACATCTCCCCATTTCCCCCACCCCCC------------------------------------------- -------------------------------- >Canis_familiaris TGGTTACCATATG-TG---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --AAGGAATTTCGG------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------TTTTCTATTTATAAATATATGTCTC-AAAA---TTTCTT---TTTTTCC----------AGTTTCATT GAGATA----------------------------TAAAGTATACAGAACAATGATTTGACTAAACATAAA---------- ---------------------------------------------TTGAGAAATGATTGCCATGATA-----AGTTAAC- -ATCTATCATCTCATAGAGATACAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGGAAA AAAGAAAAAAAAATGTGGTTATT--CCCTTGTGATAAGAACTCGTAGGCTCTACTCTCTCAACGACTTTCAAATGTGCCA CTCAGCAGAGTTCATTATAGTCACCATGCTGTACATCACATCCCCAGGACTCACTGA-----TCTCACTGGAACTCTGTA CCTTTTAACTACTTTCATCTAA-----------------TTCTCTTTTTATTCC---TTTCTCTAATTTTC-CAACAATC TTAGACGGTGAACCAACCACAGCCTTTGAGGA >Felis_catus TTGTTGCCATGTGCCT---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --GAAGAAGTCTGATTTTCCAATTATTTTAAATGTTTTTTTTTTTTCAACGTTTATTTATTTTTGGGACAGAGAGAGACA GAGCATGAACGGGGGAGAGGCAGAGAGAGAGGGAGACACAGAATCGGAAACAGGCTCCAGGCTCTGAGCCATCAGCCCAG AGCCTGACGCGGGGCTCGAACTCCCGGACCGCGAGATCGTGACCTGGCTGAAGTCGGACGCTCAACCGACTGCGCCACCC AGGCGCCCCTGATTTTCCAATTATAAGTAAACACTTG-AAAA---CTTCTTTCTTTTTTGC----------AGTTTCATT GAGATACAATTGGCAAAC-AGCACTGT-TAAGTTTAAGATACACAGGACAATGATTTGACT-GACACAGA---------- ---------------------------------------------TTGTGAAATGATTACCAT-ATAAGTTTAGTTAAC- -ATCTGTCCTCTCATACAGATGCAGG-------------------------------------AAAAAAAGGAAAGGAAA AAGCAAAAAATA----TGTTTTT--TCCTTGCGCTAAGAACCCTTGAGATCTACTCTCTTTGCAACGTTCAGATACGCCA CACAGCAGAGCTAATTATAGTCATCATG-TGCACATCACATCCCTGGGACTTACCT------TCTAACTGGAAGTTTGTA CCTTTTAACCACTTGTGTCCAA-----------------TTCTCCTTTGATTCC---TTTCTTTAATTTTT-CAACAGTC ATAAACGGGG----AGCCACACCCACTCAGGA >Manis_pentadactyla TTGTTACCATGTCCCT---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --GAGGAATTTTGA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------TTTTCTACTTATGAATAAATATCTC--AAA---TCTCTA---TTTTTGC----------AGATTTATT GAGATAAAATTGACAGAG-AGCACTGTGTAAGTTTAAGGTCTCCAACATAATGATTTGGCT-TATGTATA---------- ---------------------------------------------TTGTAAAAAGATTACCAAAGTAAATTTAGTTAAT- -ATCCATCATATTGTATAGGTATAAA-----------------------------------------------AAAGGAA AGAGAAAAAATG----TGTTTTCTTTCTTTGTGATGAGAACCCTTAAAATCTATT--------AACTTTC--ATATACCA CACAGCAATGCTAACTATAA-CATCATCTTGCACATTACCTCCCTTGAACTTACGTATCT--TATAACCAGAAGCTTGTA ACTTTTGGCCTCCTTTGTCTAA-----------------TTTTTTTTCTATTCC---CTTCTTTAATTTTC-TAAAAGTC TTAAACTTTG----AACCACAACTATTCATGA >Sus_scrofa TTGTTACTGTTTGCCTAAAGAATTTTGATTTTCCTGTGGTTGCCAAGGAGGAGGGGAAGGGAGTGGGATTCATTGGGAGC TTGGGGTTAATAGAAAACTATTGCCTTTGGAAAGGATAAGCAATGAGATCCTGCTGTATAGCACTGGGAACTATACCTAG TCACTTACCATGGAGCATGATAATGTGAGAAAAAGAATGTATATGTGTATGTGTGACTGGGTCACCTTGCTGTACAACAG AAAATTGACAGAACATTGTAAACCAGCTATGATGGAAAAAATAGAAATCACTAAAAAGATAAATAAAAAACACTGAAAAA AAAAAGAATTTTGA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------TTTTCCATTTGTGAGTAAATACCTT-AAAT---CTCTTTT--TTTCCCC----------AGGGTTATT GAGATATAGTTGACATAT-AGCATTGTGTAAGTTT--------------AATGAATTGACT-TACAAATA---------- ---------------------------------------------TTGAGAAACGACTACCACAATAAGTTTAGTTAAC- -AGCCATCATCTCGAATAGATACCAAC--------------------------CACTCCCCCC----------------- -----AAAAAAG----CGTTTAT--TCATTGTGATGAGAACCCTTAGAATTTACTCTC-----AACTTTCAAATATACTG TACAGCAGTGC-AACAATAGTCTTCATGTTGTA-ATTACATGTCTAGTCCTTATTTATAT--TATAACTGCAAGTTTGTA CCTTTTGACTACCTTCATCAAA-----------------TTC---------------TTCCTTCAATTTTC-TAAACATC TTAAACTGTG----AACCAGAACCATTCACAA >Bos_taurus TTGTTATCACATGGCT---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --GAAGAACTTTGA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------TTTTCCATGTATGAATAAATAACTT-AAAA---TTTTCTT--TTCCCCC----------AGTTTTATT CAGATATAGTTAACATAC-AGCAC----TAAGTTT---------TTTAAAAAAAATTTACT-TACAAATA---------- ---------------------------------------------TTGTGAAATGATTAACACAATAAGTTTAGTTAAC- -ATCCATTATCTCATGTAGATATCCC------------------------------------------------------ ---TCAAAGAAG----CTTTTTT--CCCTTGTGATGAGAACTCCTAGGATTTACTTTCTGGACAACTTTCAAATATAACA TACGGCAGTGC-AACTACAGTCTTCATGTTGTA-ACTATATTTCTAGTACTTATT-------TATAACT----------- --TTTTGACTACCTTTATCCAA-----------------TTCTCTTTTTATTCC---TTTCTTTAATTTTC-TAAATGTC TAAAACTGTG----AATCACAACTATTTATGA >Equus_caballus TTGCTACCACGTGCCT---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --GAAGAA------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TTTCCGTTTATGAATAAATACCTT-AAAA---TCTCTT---TTTTCCC----------AGTTTTATG GAGATATAATTGACACAC-ACTGCTG--CAAGTTTAAGGCGTGCGGCATAATGACTTGCCT-TACACACA---------- ---------------------------------------------CTGTAAAATGGTTACCACGAAAGGTTTAGCTGAC- -ATCCGTCATCTCACATAGATACGAA-----------------------------------------------AAGAGAA AAGGAGAAAAAG----GTTTTTC--TCTTTGTGAGGAGAGCTGTTAGGATCTGCTCTCTCAACAACTTTCCCATTTACTA TAGCTCAGTGTTAAC--TAGTCATCATGCTGGGCATCACATCCCCAGTACTAATTTATCC--CGTAACTGGAAGTTTGTA CCTTTCAGCAACCTTCATCCAT-----------------TTCTCTTTGTATTCC---TTTTTTAAATTTTC-TGAAAGTC TTAAACTGTG----GGCCACTACCATGCATGG >Ceratotherium_simum TTGCTACCAAGTGCCT---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --GAAGAA------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TTTCCATTTATGAATAAATACCTC-AAAA---TCTCT----TTTTTCA----------AGTTTTATG AAGATGTAATTGGCATAC-AGCACTG--TAAGTTTAAGGTGTACGGTGTAACGACTTGACT-TACAGATA---------- ---------------------------------------------CTGTGAAATGATTACCACAATAGATTTAGTTGCC- -ATCCATCATCTCATATAGATACAAA-----------------------------------------------AAAAGAC AAAGAAAAAAAA----AATTTTC--TCCTTGTGATGAGAACTCTTAGGATCTGCTGTCTTAACAACTTTCCTGTGGATCA TACAGTAGTGTTAA-TGTAGTCCTCATGCTGTACATCACATCCCCAGTACTAACTCATCT--CATAACTGGAAGTTTGTA CCTTTTGACCTCTTTCATCCAC-----------------TTCTCTTTTTATTCC---TTTTTTTAATTTTG-TAAAAGTC TTAAACTGTG----AACTACAACTATGCATGG >Myotis_myotis TTGTTACCATGTGCCT---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --GAAGAGTTTTGA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------TTTTCCATTTATGAATAAATACCTGAAAAA---TCTCTTTTTTTTTTCT----------GGGTTTCTT AAGCTATAATGGACATAT-AGCACTGTGTAAGTTTAAGGTGTAAGGCATAATAATTTGACT-TACATATA---------- ---------------------------------------------CTGTGAAATGATTACCAAAATAAATTTAGTTAAC- -ATTTATCACATCCTATAGATACAAA---------------------------------------------------GAA AAGAAAAAGAAT----TTGTTTTCCTCCTTGTAATGAGTACTCTTA-GATTTACT--CTTAACAACTTTCAAATATGTCA CACAGCAGTGTTAAATATAGCCATCATGTTGTACATTACATCCCCATGACT-----------TATAACCAGAAATTTGTA TCTTTTGACCACCTTCATCGTA-----------------TTCTCTTTGTGTTCC---CTCCTTTACCTTTC-TGACACTC ATAAACTGTG----AACCACAGCTATTCATGA >Rousettus_aegyptiacus TTGTTACCATGTGCCT---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --GAAGAATTTTGA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------TTTTCCATGTGTAAATAAATACCTT-TAAA---TCTCTT---TTTT-CC----------AGTTTTCCT GAACTGTAATGGACATAC-AGCACTGTTTAAGTTTAAGATACACAGCATAATGATTTGACT-TACATATATTAAGGCAAA AGATTTATACAATCCAAAGAAAAACCAGAGCATGACTTACATATTTTGTGAAGTGATTACCAAAATAAATTTAGTTAAC- -ATTTATCATGTCATATAGATATAAA----------------------------------------------AAAAAGAA AAAGAAAAAAAA----TATTTTT--TCCTTGAAATGAGAACTTTTAAGATCTGCCCTCTTAATGTCTTTCAAATATAGCT CACGGCAGTGTTAACGACAGCCACCACATTATACATTACATCCCT-GCACTTATTTGTCT--TATAACCGGATGTTTGTG CCTTTTGACCATCTTCATCTAA-----------------TTCTCTTTGTATTCC---CTCCTTTAATTCTC-TAAAAATC TTAAACTGTG----AACCACATCGAGTCATGA >Condylura_cristata CTGTTACATTGTACCT---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --GAAGAATGTGAA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------TATTTCATTTATGAACAGTTATCTT-AAAA---TTGCCT---TTATGTC------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------TGTCTTCAATTTTC-TAAAACTC TTCAAATGGG----AATCAAGG---TTCCTGG >Erinaceus_europaeus TTGTTAC-ATGTGCTT---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --AAATAATTTGAAT----------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------TTTTCCATTTATAAAAAAATACTTT-AAAA---CACCTTT--TTGTACC------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------TATCTTTAATTTTCTTAAAACTC TTAAAATGT-----AACCACAACTATTCATAA >Homo_sapiens CTGTTGGCACGTGCCT---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --GAAGAATTTTGA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------TTTTGCATTTTTGAATAAATGGCTT-AACA---TCCCTTT--TTATTCC------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------TATCTTTAACTTTC-TAACAATC TTAAACTGTG--------ACCACTATTCATGA Bat141_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------AAAATGGTA ACTATGTGAGGTGATGGATATGTTAAT---TAGCTTGATTGTGGTAATCATTTCACAATGTATAC--------------- -GTATATCAAAACA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA -------------------------------------------------------------------------------- --------- >Canis_familiaris TGT------CTTTTTTAATGATAATAACTTTC------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------TTAAAATCTTGGAAAGCATGGCTT----TAA---AAAA-----ACAAGTT------------ ------GGCAGTGACAGATGT--TACC---TAGACTTTCTG-GGTGATCCTTTCATAATATATAC--------------- -AAATACTGAATCA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TTATGTTGTACATCTGAAACTAATACAA-TACTATAAGTC---TGTATCTCA-ATTTTTTTAAAAGG ---GGGGAGGTT---AG----GTAAATCCTCAAGCAAATGTCCCTGTGCTTCTGGCGCAGCT--GAGTCTCATCCCC--T AGAACCATC >Felis_catus CGTAT-----TTTTCTAATTAGAATAACTTGCCTGTTTTTAATGTATATTTTGAGAGAGAGAGAAAGAGAGAGAGAGAGA GACAGTGCAAGTTGGGGAGGGGCAGAGAGGGAAAGAGAGAATCCCAAGCAGGCTCCACATTTTCAGTGCAGAGCCTGATG TGGGGCTCGATCCCACGAACCCTGAGATCATGACCTGAACTGAGATCAAGAGTCAGACGCTTAACCGACTGAGCCACCCA GGGGCCCTGAGAATAACTTTAATATCTTAGAAAGCTTGGCTT----AAA---AAAA----AAAATGTT------------ ------AGCAGTGA------------C---TAGACTTTGTG-AGTCATCGCTTTGCAATATATAC--------------- -AAATATCCAATCATGGGGCGCCTGGGTGGCTCAGTCGGTTGGGCGTCCGACTTCGGCTCAGGTCATGATCTCGCGGTCC GTGAGTTCGAGCCCCGCATCGGGCTCTGTGCTGCCAGCTCAGAGCCCGGAGCCTGCTTCGGATTCTGTGTCTCCCTCTCT TTCTGCCCCTCCCCTGCTCATGTTCTGTCTCTCTCTGTCTCAAAAATAAATAAAAACATTAAAAAAATTAAAAACAAAAC AAATATCCAATCGTTACGTTGTACACCTGAAACTAAGACGA-TGTGATATGTC---TGTATCTCA-ATTAAAAACAAGAG ---AAAAAAGTT---GG----GTAAATCCTCCAGCAAATGTCCACGTACTTCCAGCACAGCT----GTCTCATCCCC-TT AGAACCATC >Manis_pentadactyla TGTACTTA-CTTTTCTCACGGGAATAGCATTC------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------TTAAAATCCTGGAA-GCATGACTT----TAA---AAAA-----------A------------ ------GTTGGTGTTAGATGT--TAAC---TAGACTTGGGGTGGTGAATATATACATATATATACTCGAATATATATTCG AATATATCGAATCA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------CTATGTTTTATAACTGAAAGTAATGTAA-TGTTATGTATCAATAATACCCCA-AT------------ ---AAAAAAAAT---GG----ATAAATCTTCAAGTAACTGGCCATTTACC-CTGGCTCAGCT--------CATCTCCATT AGAACCATC >Sus_scrofa TGTCTTCGGCTT------------TAACTTTC------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------TTAAAATCTTGGAAAGCGTGGCTT----GAA---AAAA---------CTT------------ ------GGCAGGGACAGGTGG--TAACAGGTAGAATTACGGTGGTAATCATTTTTCAATAGAGGC--------------- -GGATACTGAATCA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TTCTGCCGAACACCTGAAACATACGCAA-TGTTATATGTCAATCACATCTCACGTTTTGTTTTGTTT ---GGTTAAGTT---GG----GTAAATCCTCAAGCAAATGCCCACTCACCTCTGGCCCAGGTCTGAGTCTCATTCCTTTT AGAATCATC >Tursiops_truncatus TGTATTTGACTTTCCCAATGGGAATAACTTTC------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------TTAAAATCTTGGAAAGCGTGGCTT----AAA---AATG----------GT------------ ------GGCTCTGATGGGTAT--TAAC---TAGACTTATTGTGGTGATCTTTTTGCAGTATATGC--------------- -AAATATCGAATCT------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TTATGTCGTACACCTAAAACTAATGCAA-TATTATATGTCAATTATATCTCA-ATTTTATTTTT--- ---AAG----TT---GG----GTAAACCCTCAAGCAAATGTCCATTCACAACTGGCTCAGCTCTGAGTCTCATTCCCTTT AGAACAATC >Equus_caballus TGTATCTGGCTATTCTAATGGAAATAACTTTC------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------TTAAAATCTTGGAAACCAAAGTTT----AAA---AAAA-------AAGTT------------ ------GTTGGTGAAGGATGT--TATC---TAGACTT---GTTGAGATCATTTCACAACATACAC--------------- -AAATATC-AATCA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TTATGTTGCACACCTAAAACTAATATAA-CGTTA---------TATATCTCA-AAAGA--------- ---AGAAAAGTT---GA----GTAAATCCCCAAGTGAATGTCCATTTACCTCTGGCTCAGCCCTGAGTCTGATCAGCTTT AGAACCCTC >Ceratotherium_simum TGTATCTGGCTTTTCCAATGGAAATAGCTTTC------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------TTAAAATCTTGGAAAGCATAGGTT----AAA---AAAA--------AGTT------------ ------GGTGGTGAAGGATGT--TAAC---TAAAGTT------GTGATTATTTCACAATATATAC--------------- -GAATATCAAATCA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TTATGTTGTACACCTAAAACTAATATAA--------TGTCAATTATATCTCA-ATTAAAA------- ---AAAAATGTT---GA----ATAAATCCCCAAGTAAATGTCCATTTACATCCGGCTCAGCTCTGAGTTTCGTCCCCTTT ACAGCCATC >Myotis_myotis TGTATTTGGCTCTTCTAATGAAAATAACTTTC------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------TTAAAATCTTGGAAGGCACGGCTT----AAA---AACA---------CTT------------ ------GGCAGTAATGGATGTGACCAC---TGTGTATATTGTGGTAATAATTTCACAGTATACAC--------------- -AGTTATCAGATCA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TTATGTTGTACACCTGAAACTAATATAA------TATGTCAATTACTTATCT-TTTT---------- ---AAG----TT---GG----GTAAGTACTCAAGTAAATGTCTATTTACCTCTGGCTCAGCTGTGAGCCTCATCCCCTTT AAAACCATC >Rousettus_aegyptiacus TATATTTGGCTCTTCTAATGGGAATAACTTCC------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------TTAAAATCTTGGAA-GCGTGACTT----AAG---AAAA---------GTT------------ ------GGCAGCAGGGAATGT--TGAC---TAGACTTCTTGTGGTGGTCATTTCACAACATGTAC--------------- -AAACATCAAGTCA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TTATGTCATAGACCTACAACCAACATAA-TGTTATACGTCGATTATATCTCA-ATTTTTTTT----- ---TAAAGAATT---GG----GTAGGTCCTCAAGGAAATATCTGTTTACCTCTGACTCG--------------------- ----CCATC >Condylura_cristata CATACTTGGATTTT----------TAACT--C------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------TTAAAATTTTAGAAAGTGTGGTATACAAAAA---AATCACTGAAA---TT------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------ACCACTACAGTTCTTCAAGTTCACGTCCATTTACCTCTGGTTCAGCTCTAAATCTCATC------ ----CCATT >Uropsilus_gracilis TGTACTTGGATTTTTAAAAGG-AATAACTTTC------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------TTAAAATTTTGGAAATCATGATATACCAAAA---AGT-GTTGAAC---TT------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------ACCAACACAATTCTTCAAGTAAATGTTTATTCATCTCTGGTTTAGCTCTGAATCTCATC------ ----CAGTC >Homo_sapiens TATATTTGGCTTTTCTAATGGGAATGACTTTC------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------TTAAAGTCTTGGAAAGCATGGTTTCAAAAAA---AAAAAAAGTCAGACTT------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------ACTGCCACTGTTCTTCAAGTAAACCTCCATTCACC-CCAGCTCAGCTGTGAGTC---TCTCCTTT AGGACTGTC Bat143_LINE >L1MA9_3END ------------------------------------------------------------------------TTTTTCCA GCTTTATTGAGGTATAATTGACAAATAAA----AATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATATACGTAT ACATTGTGAAATGATTA-CCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTACCA------TTTTTTTGTG TGT--GGTGAGAACACTTAAGATCTACTCTCTTAGCAAATTTCAAGTATACAATACAGTATTATTAACTATAGTCACCAT GCTGTACATTAGATCTCCAGAACTT-ATTCATCCTGCATAACTGAAACTTTGTACCCTTTGACCAA-------------- ------------------------------------------------------------ >Canis_familiaris CACCCTGAATTAGTCAGACATTCTCTCTCAGCACATGACTTCTACCATAT---ATGCATCCATTGATAT-------ATTT TTTTAATTGAGATAGAATTGACATATAAC-----ACTGTATTCATTTCAGGTGTACAATTTAATGTTTCAATGTTTGTAT ATATTGTGAAATGATCA---------TGTCTCATTAAC--TTCTATCACTATACATGGTTACGATT--TTTTTCTCTTTT TGT--GTTGAGAACTTAGAAGAT-TAGCGTCGTAGCAATTTTCAAATATACGTTACAATATTCTTAACTGCAGTCACTAT GCTATACATTACATCCCTGGGACTT-GTTTATTTT--ATATCTGGAAGTTTG-----------------ATGCATCCATC TATTT---ATTGGATTCATATTCACTGGGTCCTAACTATCTTTT--GCTTAGGCTCATCA >Felis_catus CACCCTGAAGTAGTCA-ACATTCTCTCTCAGTGCAGGACTTCTCCCGTGT---ATGCACCCATTGATGT-------ATTT -TTTAATTGGCTTATAATTGACATAGAAC-----TCTGTATCAGTGTCAGGTGTACAACATCATGATTTAGTATTTGTCT ATATTGTGAAATGATAA---------TGTCTCATTAAT--ATCTATCACAATACATGGTTACAATT--TTCTTTCTCTTT TGT--GTTGAGAACTTATAAGATCTAGTCTCTTGGCAA-TTTCAAATATACATTACAGTTTTATTAACTATAGTCATTAT GCTGTACATTACACTCCCAGGACTT-ATTTATTTT--ATAACTGGAAGTTTG------------------TGCATCAATA TATTT---ATTGGTTTCATATTCATTTGGTTGTAACTATCTTTG--GCTTACGCTTCTCC >Manis_pentadactyla CACCCTGAAGCAGTCA-ACATTCTCTCTCAAAACATGACTTCCTCCATGC---ATCAATCCACTTATTT-------ACTC CTTTAAATGAGATGTAATTGACATATAAC-----ATTATGTTAATTTCACATGTGTAATATAATGATTTGATATTTGTGT AT-CTGCAAGACAATCA-CCACAATAAGCATAGTTAAC--ATTTGTCACCATAC--GGTTACTATT--TTTTTCTCTTTT TGT-----GAGAACTCATCCCATCTACTCTTTTAGCAACTTTCAAATAGAAAGTACAGTATAATTAACTATAGTCACCAT GCTGTGCATTACATCCCCAAGACTT-ATTAATTTT--ATAACTGGAAGTTTG-----------------GGGCATCCATT AATTT---AATGGTTTCATATTCACCTGG----GCCTGTCTTTT--GCCTTGGCTTGTCA >Sus_scrofa TACTCCAAATTAGTTA-GCCTTCTCTCTCAAAGCCTGGTTTCCTCCATGG---ATGCACTCAATTATTT-------GTTT GTTTTATTGAGATACCACTGAGCAATAAC-----AGTATATTAGTTTCAGGGATATGACATGATGACTCA-TGTTTCTAG ATGTTGCAAAGTGATCA----CAGTAAGTCTAGTTAAC--ATCCCTCATCATACATAGTTACAAAATGTTTTTTTCTCTT TCTTTGATGAGAGCTTCAAATATCTACTCTC--AGAAACTTTCCCATATACAATATCGTATTATTAACTGTAGTCATCAT GCTGCACATTAGGTCCCCAGGATTT-ATTTATTTT--ATAACTGGAAGTTTG-----------------CTGCACCCATT TGTTT---ATGGGCTTCCTGTTCATTAGG----GCCTATCCTTT--GCTTCACCTTGGCA >Tursiops_truncatus ----------TAGTCA-ACATTCTCTCTCAAAGCACGGTTTCCTCCATGG---ATGCATTCACTTATTT-------ATTT ATTTTATTGAGATATAATTGACCTATAAC-----ATTATATTAGTTTCAGGTACACAACATAATGATTCA-TATTTCTAT ATATTGCAAAATGATCA-CAACTATAAGTCTAGTTAAC--GTCCATCATCGTACATAGTTACAATT--GTTTTCTCTTTT TGT--GATGA--ACCTTAAAGATCTACTCTCTTAGCGACTTTCAGTTATACAATACAGTGTTATTAACTATAGTCATCAT GCTGTACCTTATGTCCCCAGGACTTAATTTATTTT--ATAACTGGAAGTTGG-----------------GTGTATCCATT TGTTT---ATTGGCTTCATATTCCTTTGGGTCTGACTATCTCTT--GCTTTGCCTTGGTG >Equus_caballus CACCCTGAATTAGTCA-ACATTCTCTCTCAAAGCATGACTTCTTCCATGT---ATGCATCCATTTATTT-------ATTT -TTTTACTGAGATATAATTGACATATAACATACAATTATGTTAGTTTCAGGTATGCAATATAATGATTCAGTATTTGTAT ATATTGTGAAATGGCCT-CCACAATGGGTCTAGTTAAC--ATCTGTCACCATACGTACTTAAAAAA---TTGTGTGTGTG TGT--GATGAGAACTTTTGAGATCTACTCTCTTAACAACTTTCCAATATACAATATAGTATTATTAACTATAGTCACCAT AATGTACCTTACATCCCCAGGACTT-ATTTATTTT--GTAACTAGGAGTTCG-----------------ATGCATCCATT TATCT---ATTGGTTTCATAGTCAT-------TGACTAGCTTTT--GCTCTGTCTTGTCA >Ceratotherium_simum CACCCTGAATTAGTCA-ACATTCTCTCTCAAAGCATGACTTCTTCCATGT---ATGCATCTATTTGTTT----------- --TTTATTGAGATATAATTGACATGTAACATATAATTATGTTAGTTTCAGGTATACAACATAATGATTCAATATTTGTGT ATATGGCAAAACGATCA----CAATAAGTCTAGTTAAC--ATCCATCACCACACATAGTTACAAAA---TTGTGTGTGTG TGT--GATGAGAACTTTTAAGATCTACTCTTTTAGCCACTTTCCAATATACAATACAGTATTATTAACTATAGTCACCAT GCTATACGTTACATCCCCAGGACTT-ATTTATTTT--GTAACTGGAAGTTTG-----------------ATGCATCCATT TATTT---ATTGGTTTCATATTCATT-------GACTAGCTTGT--GCTTTGTCTTGTCA >Myotis_myotis CACCCTGACTTAGTCA-ACATTTCCTCTCCAAGTATGACTCCCTCTATTC---ATTCAT-------TTT----------- -TTAAATTGAGATATAATTGACATATAAC-----ATTATATTAGTTTCAGGTGTACAACATAATGTTTCAATATTTGTAT ATATTACAAAATGATCACCCATAATGAGTCTAATTAAC--CTCCATCACCACATATAGTGACGAAA---TTCTGTGTGTG TGTAAGATGAGGACTTTTAAGATCTAATCTCTTAGCAACTTTCAAATGTACAATACAGTAAAGTTAACTACAGTTACTAC GCTTTACATTTATCCTCCAGGAC---ATGTATTTA--ATGACTGGAAGTTCA-----------------ATTCATCCATT TATTT---GTTGGTTTTGTATTCACTTGG----GCCTGTCTTTT--GCTTTGGCTTGTCC >Rousettus_aegyptiacus CACCCTGACTTAGTCA-ACATTTTCTCTCAGAGTGTGATTTCCTCCATGT---ATGCATTCATTCACTT----------- -TTTTATTAAGATATAATTGACATATAAC-----TTTATATTAGTTTCAGATGGACAACATAATGATTCAATATTTGTAT ATATTGCTAAATAATCA-CCATAATGAGTCTAATTAAC--ATTCATCGCCGCACATAGTTAACGAA--ATTT----TGCA TGT--GATGAGAACTTTTAAGATCTACTCTCTTAGCAACTTTCCAATATATGATACA---TTATTAACTGTAGTCACAAT GATGTACATTTGATTGCCAGG-------------------ACTGGAAGTTTG-----------------ATATATCCATT TACTT---ATTGGCTTCCTATTTTTTG-----TGTCTATCTTTT--GATTTGGCTTGCCA >Condylura_cristata CACCCAGAATTCATCA--AATTTTCTCTCAAAGCATAAATGTC-CTATAG------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------AATCACCCATT TATTT---ACTGTTTTCATATTCATTTGGAGCTAAATGTCATTT--GCTTTGGCTTGTCA >Erinaceus_europaeus CAA--TATATTTGTCA-CTGTTTTCTCTCAGAGCACAACTTCCTCTATGT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------TTATATCTACT CACTT---ATTGATTTTGTATTCTTCTGGTCCTAGAGATCCAAGAAGCTCTGGCTTCATG >Homo_sapiens CACCCTGAATTCCTCA-ATCTTCCCTCTCAAAGTATGACTCCTTCCACGT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------ATCCATCCATT TATTG---ATTGGTTTTCTATTCATTTGGCC--------CTTTT--GTTGTGTCTTGACA Bat146_LINE >L1MA9_3END ---------------------------------------------------------------------------TTTTT CCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGAT-ATACGTAT ACATTGTGAAATGATTACCACAATCAAGCTAA------------TTAACATATCCATCACCTCACATAGTTACCATTTTT TTGTGTGTGGTGAGAACAC-TTAAGATCTACTCTCTTAGCAAATTTCAAGTATACAATACAGTATTATTAACTATAGTCA CCA----------------------------------------------------------------------------- ---------- >Canis_familiaris TCTTTCCAGCCATACAAGATTATT-GTAATGATTGAAAGAGGTCATGTATG---TAGAAGCACTTTTT------------ -ATTTTTTATTGGGATATGTTCAACATATA-GTGTTGTATAAATTTAAGGTGTACCACATGTTGATTTGAT-TCATTGAA AT-TTGGAACATGATGGCTCTTGTAGCAATAG------------T----ACTTCTATCACATCATATGAG---CATTTCT TTTTA---GGTAGAAATAA-TTAAGATAGTGTCTCTTAGCACATTTGAGGGTTCTCATGCAACATTGC------------ ------TAGAAGCACTTTTTTTT---AAACAGCAAAGAGATTTTAAAGGTGTATGGTAAT----------ACTCTTAT-- AAATCGA-TG >Felis_catus TCTTGACAGCCACGTGAGATTATT-GTAACGATTAAATGAGGTCATGTGTA---TAGAAACACTTTGC--------ATTT TATTTTTTATTGGGATATGTTTGACACACA-GCAGTGTATAAATTTAAGGTGTACAACACGTTGATTTGGT-ACGCGGAT AT-TTGGAACACGATTGCCATTGTAGCAGCAG------------TCAGCACCTCTGTCACGCCGTATGAGCGACATTCCT TTGCA-GTGGTTGGATTAA-TTGAGATCTTGTCTCCTAGCACGTTTGATGATTCTAATGCAACGTCGT------------ ------TAGAAGTAC---TTTTT---AAACAACAAGAGGATTTTAAAGGCGTGTGGTAAT----------ACTCTTAT-- AAATCGA-TG >Manis_javanica CCTTTCCAGCCACACAAGTTAATT-GTAATGA-TAAATGAGGTCATCTATG---TAGAAGCACT---T--------ATTT TATTTTTTATTGAAATACGTTTGGCATAAA-ACATTGTGGAAATTCCTGG--TACAACATGTTGGTTTGAT-ACATTTAT ATT----------ATTGCCATTGTAGTGGTAA------------TTAGCACCTCTGTCATGTCACATCAGTATCATTTCT TTTCA-GTGGTTGGAATAA-TTAAGACCTAGTCTCTCAGCAAAGTGGATGATTATAATACAACTCTGT------------ ------TG-------------TT---AG------AAGGGATTTTAAAGATGTATGGTTCTTACAGATGTAAATATTAT-A AAATTAT-TG >Sus_scrofa ACTCTCCCGCCCTGCAAGGTTATT-GCAGTGATTAAATGAGATCATGCATG---GAGAGGCACTTTTT--------ATTT TCTTTTTTATTGAAGTATGTTTGACCTAAA-GTATTGCATAAATTTAAGGCATATGACTTATTGATTTGAT-TCAACTGT ATACTGCAATGTGATTGCCATTGTAGGAGTAA------------TTA--ACTCCTATCACGCCACATAATTAACATTTCT TTTTA-GTGGTCGGAATAA-TTAAGGTCTAGTCTCTTAGCCTGTTTGATGATTGTAATGTAACGT--------------- ------T---AACAC---ATTTT---AAGCAGCAGAGGGATTTTAAAGATGTGTGGTAAG----------AGTCTTAT-A AAATTAA-CA >Bos_taurus TCTTTCCAGCCATGCAAGGCTATT-GTAATGATTAAACTAGGTCATGTATG---TTGAAGCACTTTTT------------ -ATTTTTTATTAAAATATATTTGACATGTG-GCATTGTATAAATTTAAGGTGTGTGACTT----ATTTGACACAGATTGT ATCTTATA-----ATTGTCATCATGGCAATAA------------TTAACTCCTCTGTCATGTCACATAATT-TCATTTCT TTTTG-GTGATTGGAATAATTTAAGATCTAGTCTCTTAGCAACTTTGATGATTGTAATAC--TGTTGT------------ ------TAGAAGCTC---TCGTT---AAGCAGCAGAGGGATTTTGAAGATGTATGGTAAT----------ATTCTTAT-A AAATTAAATG >Equus_caballus ACTTTCTGGCCACACAAGATTATT-GTAATGATTAAATGAGGTTATGTATG---TAGAAGCACTATTT---ATTTTCTTT TATTTTCTATTAAAATACATTTGACATATA-AC---ATGTAAATTTAAGGTGTACAATACGTTGATTTGAT-ACATTTAT ATATTGTAAT---ATTGCTGTTGTTGCAATAA------------TTAGCACCTCTGTCACATCACATAATTATCGTTTCT TTTTA-GTGGTTGGAATAC-TTCATATCTAGTCTCTTACCAAGTTTCATGATTATAGCACAATATTGTT---T------- ------TAGAAGCAG---CTTTT---AAACAGCAAAAGGATTTTAAAGGT-----GTAAT----------ATTCTTAT-A AAATTGG-TG >Ceratotherium_simum TTTTTCCAGCCACACAAGATTATT-ATAATGATTAAAGGAGGTCATATATG---AAGAAGCACTTCTA---------TTT TATTTTTTATTAAAATATATTTGACATAAA-ACGTTATGTAAATTTAAGGTGTACAACATGTTGATTTGAT-ACATTTAT AAATTGTAATATGATTGTTATTGTTGCGATAA------------TTAGCACCTTTGTCATGTCAGGTAATTGTCATTTCT TTTTA-GTGATTGGAATAC-TTAAGATCTAGTCTCTTAGCAAGTTTGATGATTATAATACAATATTGTT---T------- ------TAGAAGCAC---TTTTT---AAACAGCAAAAGGACTTTAAACATGTATGGTAAT----------ATTCTTTT-A AAATTGA-CA >Myotis_myotis TCTTTCCAGCCACCCAAGGTCATT-GTAATGGTTAACTGAGGTCATGTATG---TAGAAGCACTTTTA------------ -TTTTTTCATTGAAATATATTTGACATATA-GCATTGTGCAAGTTTAAGGTGTATAACCTGTTGTTCTGATAACATTTAC ATATTGTAAT---ATTGCTGTTGTAACA----------------TAAGCACCTCTATCATGTCACGTAATTGC---TTTG TTTTA-GTGGTTGGAATAA-TTAATATCTAGTCTCTTAGCAACTTTGATGATTATAATATGATATTATTAAAA------- ------GAGAAGCAC---TTTCT---AAACAACA----GATTTTAAAGATCTATGGTAAT----------AGAATTAT-A AAATTGA-CA >Rousettus_aegyptiacus TCTTTCCAGCCACCCAAGATTGTT-TTAATGATTAAATGAGTCCATGTGTG---TAGAAGCACTTTAT------------ ------------------ATTTGACATATA-ACATTGTGTAAATTTAAGGTGTACAGCCTGTCGATTTGAT-ATATTTAT ATATTATAATGTGATTGCCGTTGTAACAATAACTAGCACCTCAGCTAGCACCTCTGTCATATCACGTAATTGTCATTTCT TTTCA-GTGGTTGGAATAA-TTAATATCTAGTCTC--AGCAAGTTTAGTGATTATAAAAC--TATTGTT--GT------- ------TAGAAGCAC---TTTTT---AAACAGCTAAAGGATTTCAAAGATATATGATTAT----------ATTCTTAT-A AAATTGA-CA >Condylura_cristata TCTTT--AGCCACACAAGATTATTGGTGACGGTTAAATGAAGTCGTGTATT----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------TAGAAGCAC---TTTTT---AAACAGCAAAGGGGTTTTAAAGATGTGTGGAAAT----------A--CTTAC-A AAATTAC-TG >Sorex_araneus TC-TTCCCGACAC-----GTCGTA-TCAATGGTTAAATGATGTCTGGTATG----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------TAGATATGC---T-CA----ACATTGAAGGGGGTTTT---AGAAGCATGGTAAT--------------TGATGA AAACTGT-TG >Homo_sapiens TCTTTCCAGCCACATGAGATTATT-GCAATGATTAAATGAGGTCATAAATG----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------TAGAAGCAC---TTTTT---ACACAGCGAAGTTATTTTAAAGAT-----GTAGT----------ATTCTTAT-G AAAATGA-CG Bat147_LINE >L1MA9_3END -------------------------------------------------------------------------------- ----------TATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACAC CTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------- >Canis_familiaris CCATC--TGTCTGATGCT-----CCGAACCTTCC--TGTATCATCTCCCATAGCACTATT-AGTATCT------------ -------------------------------------------------------------------TTAAGTGGTGCAC CTGAAACTAATAC---------ATGTCCATTATACCTCAACTTAAAAAAAAAAAAAAAACTTTTTAAGAAATGCATTTGA GGGGCAGCCCGGGTGGCTCAGTGGTTTTGTGCCTGCCTTCAGCCCAGGGCCTGATCCTAGAGCCCCAGGATCGAGTCCTA CATCCTACGTTGGGCTCCCTGTATGGAGCCTGCTTCTCCCTCTGCCTGTGTCTCTGCCTCTCTCTCTCTGTTTCTCATGA ATAAATAAATAAAATATTTTTAA---AAA------TG---CATTTGAG-TATTATGTAT-CAACACTGTAATACGTACAG GAACATGT-ACTGA >Felis_catus CCATCTCTGTCCGATGCC-----CCTAACCTTCCTATATATAATCTCTGACAGCACTATACGGTACCT------------ -------------------------------------------------------------------TTATGTTATACAC CGGAAACTGATAC---------ATGTCAATTATATCTCAATTT--------TAAGAAACTTTTTC--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------AAAA---AGTG---TATTTGAG-TATTATTGATCCAACACTGTAGTACGTACAG GAACAC---AAGGA >Manis_javanica TCATCT----CTGATGCT-----ACTAACCTTCA--TTTATAATCTCCCACAGCATTAT--AGTCTCT---GGC-----A TGAAAT------------------------AAGTG---ATTTCATAATATATACAAATACAGAATCATTAAGTTGTATAC CTAAAACTATTT-----------TATAGATTACACCTCAAATT--------AAAAAAATTTT------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------AAG------TG---TATTTGAG-TATTATGTATCCAACACTACAATACGTATAG GAATATGT-AATGA >Sus_scrofa CCATTT----CTGATGCT--------AACCTTCC--TTTAAAAGCCCCCACAGCACTATACAGTCTCT---AAT-----A CA----------------------------AAGTGATCATTTTACAATGTATACAAATGTCAAATTGTT--GTTGTACAC CTGAAACTAATGTTC------CATGTCAAATATAACTAAATTT------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------AAAGA--AGTG------------TATTATGTATCCAACATTGTATTATGTCTAA GAACATGT-AATAA >Tursiops_truncatus CCATCT----CTGATGCT-----ACTAACCTTCC--TTTAAAATCTCCCACAGCACTGTACAGTCTCT---AAT-----A CCAAATA-----------------------AAGGGATCATTTCACAATATATACAAATATCACATTATTATGTTGTACAT CTGAAACTGTTAC---------ATGTCAATTATACCTCAATTT------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------AAAAAANNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNN >Equus_caballus CCATCT----CTGATGCT-----ACTAACCTTCC--TTTATAATTTCCCACAGTACTTTACAGTCTCT---AGA-----A CAAAATC-----------------------AAGTGATCATTTCACAATATATACAAATATCAAATCATTATGTTGTATAC CTGAAACTAATA-----------TGTCAATTATACCTCAATTTTTTTTTT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------AA-----AGTC---CATTTGAG-TATTATGTAGCCATCACCATAATATGTATAG AAACAAGT-AATGG >Ceratotherium_simum CCACCT----CTGA----------------TTTC--TTTATAATTTCCCATAGCAGCATACAGTCTCT---AGT-----A CAAAATA-----------------------AAGTGATCATTTCACAATATATATAAATATCCAATCATTACACTGTACGC CTGAAACTAATACGT------TGTGTCAGTTATACCTGAATTTTTTTT-------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------A------AGT----TATATGAG-TGTTATGTATCCAACACTGTAAAATGTATGG AAACATGT-AATGA >Myotis_myotis CCATCT----CTAATGCT-----AGTAAGCTTCC--TTGAT-ATCCCCCACAGCACTATATAGTCTGT---AGT-----A CAAAATA-----------------------AAATGATCATTTCACAATATGTACAAATAATGAATCATTATGTTGGACAC CTGAAGCAAATATAA-TGTTACATTTCAATTATAGCTCAATAAAAATATAA----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------AAAATAAAGTA---TATTTGAG-TATTATGTATGCAGCACTATAATATGCATAG GAACATGT-GATGA >Rousettus_aegyptiacus CCATCT----CTGATGCT-----ATTAAGCTTCC--TTTATAATCTCCCACAGCGCTACACAGTCTGT---AGT-----A CAAATTA-----------------------AAGTGATCACTTTGTAATACCTACAAATACTGAATCATTAT-TTGTATAC ATGAAACTAATATAA-TGTTACCTGTCAATTATACCTCAATAAA------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------AAAATTAAAAG---GATTTGAG-TATTAC--ATGCAGCATTGTAACATGCATAG GAACGTGT-AATGA >Condylura_cristata CCATCT----CTGATCATCTCTGACTACCCTCCT--CTTATAATCTCC--CAGCACTATACAGTCTCT---AGGACAAAG CAAAGTA------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------TATTTGAA-AACCATGTCTTCAATACTGTAACACATATAG GAACATGT--GTGA >Erinaceus_europaeus CCATCT----CTGAAGCT-----ACTAACCTTCC--TTTAC-ATTTCCCATCGTACTACATAGTCTCC---AGT-----A CAA--CA------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------C-TTTGCA-TATGATGTATACAACACTGCAATATATAG-- ---------AATGG >Homo_sapiens CCATCT----CTGAGGCT-----ACTAACC------TTTGTAAGCTCCCACAGCATTATGCAATTGCT---AGC-----T CAAAGTG------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------TACTTGAACTAGCAACACTCCAACACTGTTCTACGTATAG GAAGATACAAATGA Bat149_LINE >L1MA9_3END -------------------------------------------------------------------------------- -----GTGGTTGCCAGGGGCTGGGGGGTG-----GGGGAAATGGGGAGATGTTGGTCAAAGGGTACAAAGT--------- ---TTCAGTTATGCAGGAT-GAATAAGTTCTGGAGATCTAATGTACAGC----ATGGTGACTATAGTTAATAATACTGTA TTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCACCACACACAAAAAAA-----TGGTAACTATGTG- AGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGT----------ATACGTATATCAAAACAT-C ACGTTG-----------------------------TACACCTTAAATATATACA-----------ATTTTTATTTGTCAA TTATACCTCAATAAAGCTGGAAAAA------------------------------------------------------- ------------------------------------------------- >Canis_familiaris TTT-CTTATGTTATTGCATTAGCCAAAATTTACCCCAA-AAT-------AAATGTTTAT---AAAAATGATCAT-ACAGA GA-----------CAGGAGGTGAG--GTG-----GGAGAAGTGGGTGAA-GGATGTCAAAAGTTATAAACTAAATAACTA ATCTCTAGTTAT--AAAAT-AAATAACTTATGGGGATGCAATGTTCAAC----ATGGTGGAAATAGTTAATAATACTGTA TTGTGTATTT-------ACTAACAGAGTAAATCTGAAAAGTTCTCATCAGGAGGGGAAAAAA---TTTGTAACTGTAAAC AGATGATGG--------------------ATGGTGATCATTTTGAAATGT----------ATACAAATATTGAATCATGT TTGATG-------------------------------------CAACTAATATA-----------A-TGTTATATGTCAA TTATACCTCAGTAAAA-ATAAATTAAAA-------------ATAAATGGTCAT-AACTGAGA---GCTCTGTTTT----- ---------ACTCGTGATTGCTCATGAGAACCTTGAGTGATATTAGCTG >Felis_catus TTTCCTTCTGTTATTGCATTGGCCAGAATTTACCCCAA-TAT-------AAATGTTTAT---AAAAATGGCCAC-ACAGA GG-----------CAGGGGGTGGG-GATG-----GGAGAAATGGGTGAA-GGAGGTCAAAAGGTACAAACT--------- ---TCCAGCTAT--AAAAT-AAATAACTCACAGAGATGTGATGTTCAGC----ATGGTGACTCTAGTTAATAACACTGTA CTGTACATTTCAAAGTGGCCAAGAGAGTAAAGCTGAAAAGTTCTCATCGCAAGAAAATAATC-TTTTTGTAACTACGTA- AGGTGACGG--ATGTCAGCTGGACTTCCTGTG---ATCATTTTTAAATGT----------ATACAAATATCGAGTCAT-- --GTTA-----------------------------TACACCCGCAACTCATATA-----------A-TGTCATAGGTCAA TTATAGCTCAATAAAA-ACAAACTAAAA-------------ATAAATGGTCGT-AACCGAGA---CCTCTGTTTT----- ---------ACTCCTGATTGCCCATGAGAATCTTGAGTGATATTAGCTG >Manis_pentadactyla TTT-CTTGTGTTATGGTATTATCCAGAATCTACACCAA-----------AAATGTATAT---AAAAAAGGTCAT-AC--A GA----------------------------------------GGGTAAA-GTGGATCAAAAGTGAAAAATT--------- ----CCTGTTAT--AAAAT-AAGTAAGTCATGG-GATGTAATGTATAGC----ATGGTGAC----ATTACTAATACTATA TGGCAGATTTGAAAACTGCTAAGAGAATAAATCTTAAATGTTCTTATCACAGCAAAAAAA---TTTTTGTAACTGTATA- --GTGACAG--ATGTTAACTAGACTTACAGT--TGATCATTTTGCAGTAT----------ATACAAATTTCAAACCAT-T CCATTGTTTTGAAACCAATATTATATGTGTGATAATACATTATAAACTAATGTATAGTGTTATATGTTATAATATGTCAA TTATACCTTAATAAAAGAAATAACAAATAGA----------ATAAATGGTCAT-AACTGAGA---GCCCTGTTTT----- ---------TCTCTGTATAGCCCATGAGAATCTTGAGTGATATCGGCTG >Sus_scrofa TTT-CTTGTGTTATTGCATTAGCCAGAATTTAATCCCA-AAT-------AAATGCTTAT---GAAAATGGTCAT-ACATA GG-----------CAGGAGTGGCA--TTG-----GGAAAAGTGGGAAAA-GG-GGTCAAAATCT-CAAACT--------- ---TCCAATTAT--------AAGTAAATCCTGGATATGTGATG-GTGGCTGTAATGGTGATTATAGTTAGCAATGCTTTA TTGCATATTTGAAAATA----------------------------------------------TTTTTGCAACAA----- AGGCAGTGA--ATGTTAACTAGACTTATTGTGGTGCTCATTTTCCAGTGT----------ATACAAGTATTGAATCAT-T ATGCTA-----------------------------TA-ATCTGAAATTTA-----------------TGTTTTGTGTCAA TTATACATCAACAAAATTAAAATTAAAA-------------TTAAAAAGTTAT-----GAGA---GCCCCGTTTT----- ---------ACTTGTGACTGCCCA-GAAAATCTTGAGTGATATTAGTTG >Balaenoptera_acutorostrata TTT-CTTGTGTTAATGCATTAGCCAGAATTTACCCCAA-AAT-------AAATGCTTGT---GAAAACGGTCAT-ACGTA GG-----------TGGGGGGGGGGCGGTGATGTTGGGGAAATGGGTGAA-GGTGGCCGAAAGGTACAGACT--------- ---TCCAATTAA--AAAAT-AAATGTGTGCTGGGGATGTGATGTACAGC----CTGGTGACTATAGTTAATAATGCTGTA TTGCCGATTTGACATT-----------------------------------------------TTTTTGCATCTATGTA- AGGTGATGG--ATGTTCACTAGACTTATCGTGGTGATCATTTTGCAATAT----------ATACAAGTGTTGAATCAT-T ATGTTG-----------------------------TACACCTGAAACTAATACA-----------A-CGTTTTATGTCAA TTATGCTTCAATAAAATAATAAATAAGTAAAAATGAAA---GTAAATGGTTAT-AACTGAGA---GCCCCATTTT----- ---------GCTC--GATTGCCCA-GAAAATCTCGAGTGCTATTAGTTG >Equus_caballus CTT-CTTGTGTTATTGCATTAGCCAGAATTTACCCTAA-AAT-------AAATGTTTAT---AAAAATGACCAT-ACAGA GG-----------TGGGAGGTGGG--GTG-----GGAGAAATGAGTGAA-GG-GGTCGAAAGGTATCAAGT--------- ---GTCAGTTGT--AAAAT-TAGTAAATCCTAAGGATGTAATGTACAGT----GTGGTGACCATTGTTAGTAGTACTGTA GCATATATTTGAAAGTTGCTAAGAGAGTAGATCTTTGAAGTTCTCATTGCCAGAAAAAAAATTTTTTTGTAACTATGTG- TAATGATGG--ATGCTAACCAGACTTATTGTGGTTATCATTTCACAATGTACATTTTCACACACAAGTATCAAAATGT-T ACATTG-----------------------------CACAACTGAAACTAATATA-----------A-TGTTGTCTGTCAA TTATATCTCAATTAAAAAATAAGTAAAA-------------ATAA-----------ATGAGA---GC-CTGTTTT----- ---------ACTCCTGATTGCCTAGGAGAATCTTGAGTAATATTAGCTG >Ceratotherium_simum TTT-CTTGTGTTATTGCATTAGCCAGAATTTACCCCAA-AAT-------AAATGTTTAT---AAAAATGGTCAT-ACAGA GG-----------CAGGGGTGTGG-GGTG-----AGAGAAATGAGTGAA-GGGGGTC-AAAGGTAGAAAAT--------- ---TCTGGTTAT--AAAAT-AAATAAGTCCTAAGGAGGTAATGTACAGC----ATGGTGACCATAGTTAGTAATACTGTA TTGTATATTTGAAAGTTGCTAAGAGAGTAGATCTTAAAAGTTCTCATCACAAGAAAAAAAATTTTTTTATAACTATCTA- TAGTGATGG--ATATTAACCAGAGTTATTGTGGTTATCATTTCACAATGT----------ATACAAATATCAAATTGT-T ATGTTG-----------------------------CACACCTGAAACTAATATA-----------A-TGTTGTATGTCAA TTATATCTCAATTGAAAA-----------------------ATAAGCAGTTGT-AAATGAGA---GC-CTATTT------ ---------ACTCCTGATTGCCTATGAGAATCTTGAGTAATATTAGCTG >Myotis_myotis TTT-CTTGTGCTATTGCATTAGATAGAATTTACCCCAA-AAT-------AAATGTTGAT----AAAATGCTTAT-CCAGA AG-----------CAGGAATGGGA--GTG-----GGA-ATATGGGTGAA-GAGACTCAAAAGTTACAAACT--------- ---TCCAGTTAT--AAAATAAAATAAGTCATGGGGAGATAATGTATAGC----ATAGTGGCTACTATTAATAATACTGCA TTGTATATTTGAAAGTTGTTAAAAGAGTAAATCTTAAAAGATCTCAT----GTATGAAAAAATTTTTTGTCAGTGTGAT- AGGTGACAG--ATGGTAACTAGACTTATTGTGGTGATCATTCTACAATGT----------ATACAAATATTGAATCAT-T ATGTCA-------------------------------------AAATGAATATA-----------A----TATATGTCAA TTATACCTCAATAAAA-AGTAAATAAATAAA----------ATAAATGGTCATAAACCGAGA---GCCCTGTTTT----- ---------ATTTTTGATTGCCCACGAGAATCTT-AATGATATTAGCTG >Rousettus_aegyptiacus TTA-CTTGTGTTATTGCATTAGTCAGAATTTACCCAAA-AAT-------AAATGTTTAT---AAAAATAGTCAC-ACAAA GA-------------TGGGGTGGG--ATG-----GGAGAAATGGATAAA-GGGAGTCAAAAATTACAAACT--------- ---TTCAGTTAT--AAAAT-AAATAAATCATGAGGATCTAATGTACAGC----ATGGTGACTATTGCTAATAATACTTTA TTGCATATTTGAAAGTCGCTA--AGGGTAAATCTTAAAAGGTCTCATTGCAAGAAAAAAAT--GTTTTGTGACTGTGTA- AGTTGACAG--ATGGTAACTATACTTATTGTGATGATCAATACACAATAT----------ATACAAATATCGAATTAT-T ATGTCA-------------------------------------AAATTAATATA-----------A-TGTTATATGTCAA TTATACCGTAGTAAAAATAAAAATAAAAATA----------AAAAATGGTCAT-AACTGAGA---GCCTTCTTTA----- ---------ACTCTTGATTACCCATGAGAATCTTGAGTGATATTAACTG >Condylura_cristata TTT-CTCCTGTTACTGCATTAGCCACAATTTACCCCCAGAAT-------AAATACTCAT---AAAATCGGTCATTA-TGG GA------------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------GTCCTGCTTTTTTTT TTTTATGAGAGTCTTGATTGTCCATGGGAATCTTGAGTGATATTAGCTG >Solenodon_paradoxus TTT-CTTGTGTTATTGCATTAGCCACAATTTACCCAAA-AAT-------AAATGTTCAG---AAAATCAGTCATTATTAA GA------------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------CTCCTGTTTC----- ---------ACTCTTGATTTCCCATGTGAATCTTGAGTGAGATTAG-TG >Homo_sapiens TTT-CCTGTGTTATTGCATTTGCCAGAATTTACCAACA-AATGTTAAAAAAATATTCAT---AAAAACAGTCATAACTGA GA------------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------GTGCTGTTCT----- ---------GTTCTTGATTGCCCGTAAGAATCTCGAGTGAGGTCAGCTG Bat151_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGT-ATATA TTTAAGGTGTACAACGTGATGTT--------TTGAT--ATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATT AACATATCCATCACCTCACATAGTTACCATTTTTTTGTGTGT-----GGTGAGAACACTTAAGATCTACTCTCTTAGCAA ATTTCAAGTATACAATACAGTATTATTAACTATAGTCACCATGCTGTACATTA--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------- >Canis_familiaris CTTTTGTCTGTAGGGGGAAAAGAGGTATCTAAGGG---AAAAAGTCAGAAACTGAAGGAATCTGC---TATCTTGATCTA A--TTT---CTCTCT-----T--------AAAAATTTCAACTTGATCAAGGTATAATTGACAAAC-AAAGTTGTAAGATA TTTAAAGTGTACATCGTGGTAAT--------TTAAT--ATACATAAAAGTTGTGAAAGGATTTCTCCCATCCAGTTACTT AACACATCCATTACTTTACATATTCATCATTTTTTTCTTCT------GGTGAGAACACTTAAGTTCTACTTTCTTAGCAG ATTTCAATTATATGATACGGTGTTACTAATTACAGTTACCA---------------CATCTTGATCTAATTTCT---GAG AGACTGTTCTAAAATGTAAATCATATTATGCC------------------------------------------------ -------------------------------------------------------------------------------- -----------------------------------------------------ATGATTGAAA >Felis_catus CTTTTGTCTGT-GGGG-------------------------------GAAACTGAGAGGGTCGGC---TGCCTTGATCAA A--TTT---CTCTCT-----TTTTT----AAAAATTTCAGCTTGATTAAGGTGTAATTGACAAATAAAAATTGTAAGTTA TTTAAAGTGTACATCGTGGTAAT--------TTAT---ATACATA-ATATTGTAAAAGGATTTCTCCCATCCAGGTTATT AACACATCCATCACCTCACATATTTATCATTTTTTTTCTTTT-----AGTAAGAATACGTAATTTCTATTTTCTTAGCA- ----CAATTATACCATACTGTGTTATCAAGTATAATTACCA---------------TGTCTTGATCTAATTTCT---GAG AGATCTTTCTAAAATGTAAATCAGATTATGCCATTTCC------------------------------------------ -------------------------------------------------------------------------------- -----------------------------------------------------ATGATTGAAA >Manis_pentadactyla CTTTTGTCCTG-GGAGG---------------------GAAGAATCAGAAACTGAGGGAATCTGC---TGTCTTAATCTA A--ATT---CTCTCT-----TTTTT----AAAAAAATCAACTTCATTGAGGTACAATTGACAACT-------GTAAAATA TTCAAAGTGTACATCATGGTGAT--------TTTG---ATATCTAAATGTTATGAA------------ATATAGTTAATT AATACACCCATCGCCTCATGTACTTATCTTTTCTGTTTTTAATTT-TGGTGAGAACATTTAAGTTCTACTCTTTTAACAG ATTTCAGTTATACAATACAGTGTCATCAACTCTAGTCACCA---------------TGTATTTATCTAATTTCT---GAG GG----TTCTAAAATGTAAATCAAATTATGACATTTCC------------------------------------------ -------------------------------------------------------------------------------- -----------------------------------------------------ATGATTGAAA >Sus_scrofa CCCCTCCCCCC-GGGGGAAAAGAGGTATC--AGAG--AAAAAGATCAGGAAGTGCAGGA----CC---TGTCTTGACCTC A--TTT---CTCTCT-----TTTTT--CTTAATATTGCAGTTTGATTGAGGTATAATTGACAAAC-AACATTGTAAGATA TTTAAAATGTGCGTCAAGAAGAT--------TTAATCGATACCTAAACATTGTAAAAGGATTTCCCTCATCTAGTTAATG AACACATCCATCACCTCATACATCAATCTCTTTTTTTTTCTTTTT--GGTGAGAACATTTAAGTTTTACTCTTTTATCAG ATTTCGATCATACAATACCATGTTATCAACTACAGTCACTG---------------TGTCTTGATCTAATTTCT---GAG AGAAGTTCCTAAAATGTAAATCACATTGTGCTACTTTCTTTTAACTATTATTGAAGTGTAGTTGATTTACTAGGTTGTGA TAATTTCTACTGTACAACAAAGTGATTCAGTGATACATGTACACACATCTATTCTCTTTTAGATTGCTTTTCCACATAGA TTATCACAGAATAACGGGGACCTACTGTATAGCACAGGAATTGAGCCGCTTTGGTGACTAAAA >Tursiops_truncatus CTTTTGTCCTA-GGAGGAAAAGAGGTATC--AGAG--AAAAGAGTCAAGAAATGTGAGAGTTTGC---TGTCTTAATCTA A--TTT---CTCTCT-----TTTTTTCCTTAAAATTTCAGTTTGATTTAGGTATAATTGACAAAC-AACATTGCAAGATA TTTAAAGTGTGCATTGTGGAGAT--------TTAATCAATATCTAAACATTGTGAAGGGATTTCCCTCATCTAGTTAATT AACACATCTATCACCTCACATATTCGTCTTTTTTTTTTTTTTT----GGTGAGAACCTTTCAATTTTACTCTCTTAGCAG ATTTTAATTATAGAATACAGTGTTATAATCTATAGTCACTA---------------TGTCTTNNNNNNNNNNNN---NNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------------------------------------ -------------------------------------------------------------------------------- -----------------------------------------------------NNNNNNNNNN >Equus_caballus CTTTTGTCTTG-GGGGGCAGAGGGGCA--TGTGAG--GGAAGAGTTAGGAACTGAGGGTGTCTGC---TATCTTGATCCA A--CCT---CTCTCT-----TCTTT----AAAAAATTCAGCTTTATTGAGATACAATTGACAAAT-AAAATTGTAAGACA TTTAAAGCGTACATCGTGGTGAT--------TTGAT--ATACATATATATTGTGAAAGGATT-GCCCTGTTTAGTTAATT AATGCAACCATCACCTCACATATTTACCATATTTACCTTTTTTT---TATGAGAACATTTAAGTTCTACTCTCTTAGCAA ATTTCATATATACAATACAGTTTTATCGACTATAGTCACCA---------------TGTCCTGATCTAATTTCT---GAG AGATCTTCCTAAAATGTAAATCAAAGTATGCCACTTCC------------------------------------------ -------------------------------------------------------------------------------- -----------------------------------------------------AAGACTGAAA >Tapirus_indicus TTTTTGTCCCG-GGGAGAAGAGGAGCA--TGTGGG--GGGAGAGTCAGGAACTGAGAAAGTCTGC---TATCTTGATCTG A--TCT---CTCTTT-----TTTTT------AAATTTCAGGTTTATTGAGGTATAATTGACAAAT-AAAGTTGTAAGATA TTTAAAGTGTACATCGTGGTGAT--------TTG----ATACATATCTATTGTGAAAAGATT-CCCCCATTTAGTTAATT AACATATCCATCACCTCA--TAGTTATCTTTTTTTTTTTTTCT----GGTGAGAACATTTAAGTTCTGCTC--TTAGCAA ATTTCAATGATACAATACAGTGTTATCGACTGTAGTCACCA---------------TGTCTTGATCTA-TTTCT---GAG AGATTTTTCTAAAATGTAAATCAAATTATGCCACTTCC------------------------------------------ -------------------------------------------------------------------------------- -----------------------------------------------------GTGATTGAAA >Myotis_myotis CTTTTGTCCTG-AGGAAAAATGAAGTATCTGGGGGAAAAAAGAGTCAGGAAATGAAGGAGTCTGC---TGTTTTGATCAA A--GTT---CTCTCTCTCTCTCTCTCTTTTAAAAAATTAGCTTAATTGAGATATTAATGACAAAT-AAAATTATAAGACA TTTAAAGTGTACATTGTTGTGATTTGCTATATTGAT--ATATGTAAACATTGTGAAAGGATT--CCCCATCTAATTAATT AACACATCCCTCACCTCACATATTTATCTTTTTTGGGGGCGGGGGAAGGTGAGAACATTTAAGTTCTACTCTTTTAGCAG ATTTCAAATATATACCACAGTGTTATCAACTATGGTCACCA---------------TGTCTTGATCTAATTTCT---TAG AGATC-TTCTAAAATGTAAA-CAAATTATGCCACTTGC------------------------------------------ -------------------------------------------------------------------------------- -----------------------------------------------------AGGATTGAAA >Rousettus_aegyptiacus TTATTTTCCTA-GGAGGAAATGAGGTAAGTGGAGG--AAAAGAGTCAGGAA-------------C---TGTCTTG-TCTA A--TTT---TTCTTT-----TTAA-----AAAATTTTCAACTCGATTGAGAAATAATTGACAAAG-AAGATTGTAAGACG GTTAAAGTATACATTGTGGTGAT--------TTGAT--ATATGTAAACATTTTGAAAGGATT-CTCCCATCTAGTTAATT AACACATCCATCACCTCATATATCTACATATTTT---------------TGAGAACATTTAAGTTCTACTCTCTTAGCAG ATTTCAGTTATCTAATA--ATATTATCAACTATAGTTACCA---------------TGTCTTGGTCTAATTTCT---TAA AGATCTTTCTAAAATGTAAATCAAATTATGCCACCTCC------------------------------------------ -------------------------------------------------------------------------------- -----------------------------------------------------ATGATCGAAA >Condylura_cristata CTTTTGCCTGT-GAG----------------------AAAAGAGTCAGGAACTTA--GAGTCTTC---TGTCTT------ ---TCC-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------CAG AGAACTTTTAAAA---TAAGCCAAATTGTGGCACTCTC------------------------------------------ -------------------------------------------------------------------------------- -----------------------------------------------------GTGATCCAAA >Sorex_araneus CTTTTGTATCT-GAGTG--------------------AAAAGAGTCATGAACTGAGGAACTCTGC---TGTCTTGATTGA ATTTTT-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------GAG AGATCTTTC-AAAACATGAATCAAATCATATGACATCT------------------------------------------ -------------------------------------------------------------------------------- -----------------------------------------------------CTGAATGAGA >Homo_sapiens CTTT-GTCCCT-GGGGGAAAAGAGGTATTTG------GTAAGAGTCAGGAATTGACGGAGTCTGC---TGTCTTGATCGA A--TCT-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------GAG AGATCTTTAAAAAATGTGAATTAAACAATGCTGCTTCC------------------------------------------ -------------------------------------------------------------------------------- -----------------------------------------------------ATGACTGAAA Bat152_LINE >L1MA9_3END -------------------------------------------------------------------------------- -TTTTTCCAGCTTTATTGAGGTATAATTGACAA-ATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATAT ACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTACCATT-TTTTTGTG TGTGGTG-AGAACACTTAAGATCTACTCTCTTAGCAAATTTCAAGTATACAATAC------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------- >Canis_familiaris AGTGTTGTGCTGTGTTGTCTCTAATC----GACATTAGATTTTTTTCAGAATATCC---TTCAC--TTTATTTAT----- TTATTTA----TCCATTGAGATATAATCGACTT-------GTTATATTAGTTTTAGGTGTACAAC---ACGATTTGATAT ATGTCTATGTTGTGAAATGATCACCACAATAAGTCTAGTTAAT--ATCCATCACTATGCATAGTTAGAATT-TCTTTTCT TGTGATG-AGAACCTTTAAGATCTATTCTCTTAGCAATTTGCAA------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------TTTAC--ATT-GTTTTT---AAAATGTC-----------AACTAGAG-C TGTTTAATCTGTTCCCAGTCTTCCCATTTCTGAG >Felis_catus TGTGTTTTGGTATATTGTCTGTAACG----AACCTTAGA--TTTTTTAGAATATTC---TTCACTA--TATTTAT----- TGGTTTATTCATCAATTGAGATATAATTGACTT----------ATATTAGTTTTAGGTGTGCAACATGAGGATCTGATAT ATGTATATGTTGTGAAATGATCACCACAATAAGTCTGGTTACT--ATCCATCACTATGCATAGTTACATTT-TTTTTTCT TGTGATG-AGAACCTTT-AGGTCTGTTCTCTTAGCAACTTGCAACTCACGTTTGTTTTTTTCTTTTTAATGTTTATTTAT TTTTGAGGGGGGAAGGGGCAGAGAGAGAGGGAGACAGAATCTGAAGCAGGCTCCAGGCTCCCAGCTGTTAGCACAGAGCC CAATGCAGGGCTCCAACTCACTAACTGTGAGATCATGAGCTGAGCCAAAGTCTGACGCTTAACCAACTGAGCCACCCGGG CATCCAACACATTTTTTTAAATGTCTACTTATTTATTTTTGAAAGGGGCATAGAGGGGGTGGGGGAGACAGAGAATCACA AGCAGGCTCCATGCTGTTGATGCGGGGCTCGAACTCACGAACTATGAGCTCATGACCTGAGCTGAAATCAAGAGTCTAAG AGCTAACTGACTGAGCCATCCAGGCACC---CCTAC--ATTTGTTTTT---AAAATGTC-----------AACTACAG-C TGCTTAATCTGCTCCCAGTCTTCCCATTTCTGAG >Manis_pentadactyla TGTGCTGTGGTATGTTGTCTCTAAAA----AAC-TTACA--CCTCTCAGAATCTTC---TTCATAATTTATTTAC----- TTATGTGGTTGTAAATTGAGAAGTAGATGACTTACATAACATTGCACTAGTTTCAGGTGTACAACATAATGATTGGATAT ATATGTATATTGTGAAATGATCACTGCAGTAA-----GTTAAC--ATTCATCAC-----------AAACTT-TTTCTTCT TGTGATG-AGAACATTTAAGATCTACTTTCTTGGAGGCTTCCAA------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------TTCAC-AATTTATTTTT---AAAATGTC-----------AACTAGAG-C TGCTTAGGCTGCTCCCACTCTTCCCATTTCTGGA >Sus_scrofa TGTGCTGTGGTTTATTGTCTATGATT-------TTTAGA--TTTTACAGAATATTC---TTAACAA-----ATAA----- --TTACA-------ATTAGTATATATTTTACTT-----ACATTATATTAGTTTCAAGTGTACACCATAATCACTCAATAC ACATATGTACTGCAAACTCATTGCCGCAGTAAATCTAGTTAGC--ATCCATGGTGACACATAGTCACAAATACTTTTTCT CATGATG-CAAACTTTTAAGACCTACTCTC-AAGCAGTTTTCAA------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------TTCAC-AGTTTATCTTT---AACATGTCTTTAATGGACATGTTAAAGAT TGCTGAACCTGCTCCCAATCTTCCCATTTCTGAG >Bos_taurus TGTGTCATGGTTTATTGTCTCTGATCTAATGGCTTTTGA--TTTTGTGGAATATTC---TTCAT---------GA----- CTACTTA-------ATTTAGACATAATTTATTT--ACAACATTATGTTAGTTTCAGGTGTGCAAACTAATGATTCAATAG ACACATATATTGCAAACTGATCGCCATAGTAAGTCTACTTAAC--ATCCATCAC------------AAAGT-TTTACCCT CGTGATGTAGAACTTTTAAGACCTACTCTC--AGCAATTTTAAA------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------TTCAT-AACTTATTATT---TAAATGTC-----------AACTTGAA-C GGCTGAAACTTCCCCCTGTCTTCCCAATTCTGAG >Equus_caballus TGTGCTGTTGTATATTGTCTCTAATA----GTCTTTAGA--TTTTTCAGAACATTC---TCCACAATTTACTTAT----- --TTTTA-------ATTGAGATAGAATTGACTT----------ATATTAGTTTCATGTGTACAACA-AATGATATTATAT ATG---ACATTATGAAATGATCACCACAATAATTCTAGTTAAC--ATCCATCAT----CACAGTTACAGAT-TTTTCCCT TGTGATG-AGAACTTTAAAGATCTACTCCCTTAGCAACTTTCAA------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------TTCAC-AATTTATGTTT---AAAATGTC-----------AATGAGCG-C TGCTTAATCTGCTCTCGATCTTCCCATTTCTGAG >Ceratotherium_simum TGTGGTGTGGTATATTGTCTCTAATA----GACTTTAGA--TTTTTCAGAATATTC---TTCACAATTTACTTTT----- -----TA-------ACTGAGATATAATTGACTT--ATAACATTGTATTAGTTTCACGTGGACAACAAAATGATGCGATAT ATGTATATATTGTGACATCATCACCACAATAAGTCTGGTTAAC--ACCGATCAC--CACACAGTTACAAAT-TTTTTTCT TGTGATG-AGAACTTTTAAGATCTACTCCTTTAGCAACTTTCAA------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------CTCAC-AATCTATTTTT---AAAATGTC-----------AACTAGAG-C TGCTTAATCTGCTCCTGG-CTTCCCATTTCTGAG >Myotis_myotis TGTATCGTGCTACATTGTCCCTAATA----GATTTTAGA--TTTTTCAGAATATTC---TTCACAATGTCTTTAT----- --TTTTA-------ATTGTTATATAATTGACTT--ATAATGTTATATTAGTTTCAAGTATACAACATAATGATTCGACAA ATGTACTTATGGTGAAATTATTACCACGGTAAGTCTAGTTAAC--ATCCATTTCCACAC---GATGACAGT-TTTTTTCT TGTGATG-AAAATTTTTAAGATCTACTCTCTTAGCAACTTCCAA------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------TTCATCAATC-ATTTTT---CAAATGTC-----------AACTAGAG-C TGCTCAATCTGC-CCCAATCTTCCCATTTCTGAG >Rousettus_aegyptiacus TGTGTTGTGCTATACTGTCTCCAATA----GACTTCAGA--TTTCTCATAATATTC---TTCACAATTTATGGAT---TT ATTTTTA-------ATTGTGATATAATTGACTT--ATAACATTATATTAGTTTCAGGTATACAACG-------------- -------TATCGTGAAATGATTACTACACTAAGTCTAGTTAAC--AGCCATCATGACACATGGATATCAAT-ATTTTTCT TGTGATG-ACAACTTTTGAGATCTACTCTCTTAGCAACTTTCAA------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------TTCACCAATC-ATTTTT---CAAATGTC-----------AACTAGAG-C TGCTTAATCTGCTTCTGGTCTTTCCATTTCCTAG >Condylura_cristata CGAGCTGTGCTGTATCTTCACCAGCA----GACCTTCGG--TTTTCCAAATTATTC---CTTACAATGTATTTTT----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------CAAATGTC-----------AACTAGAG-T GACCTGATTTGCTCCCGGTTTTCCTATTTCTGAG >Erinaceus_europaeus AGTCTTGTGGTATGTGGTCTCCG-----------TTAGA--CTTTCCAGAATGGTC---TCCATGAATCAATTTG----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------AAAATATC-----------A--------- -GCTTGATCTGCTCTTAGCCTTCCTATTTCAGGC >Homo_sapiens ------------------------------GATTTTAGA--TTTTTCATAATATCC---CTCACAGTTTATTGTA----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------AAAATGTT-----------AATTAGAG-C TGCTTAGTCTGCTACCAGTCTCCCCACTTCTGAG Bat156_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGT---GATGTTTT GATA-TACGT---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------ATACATTGTGAAATGATTACCACAATCAAGC----T AATTAACATATCCATCACCTCACATAGTTACCA----TTTTTTTGTGTGTGGTGAG------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------AACACTT-AAGATCTACTCTCTTAGCAAATTTC-AAGTATACAATACAGTATTATTA---ACTATAGTCA CCATGCTGTACATTAGATCTCCA-GAACTTATTC---------------------------------------------- --------------------------------- >Canis_familiaris GTAAAA----------CTATATTC-------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------TTAATAAGCA--TTCAGTAAACTTTTCTGGATATT----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------CTTTATT---GATAAAGTTTT T--------TTGTTTCTATTGAAGTATAATGGACCTA-----ACTATATTAATTTCAGGTGTATGGTGTAACAGTGATTT GATA-TGTGC---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------ATATATTGCTAAATGTCCACCA----AAATC----- ---TAAC--ATCTATCACCATATGTAGTTATACA---TTTTTTTTCTTGCTATGAGAA---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------AACTTTT-AAGATCTACTCTCATAGCAATTTTC-AAATACACAGTACATTATTATTATTAACTATAATCA CCATGCTATATATTACATTCCCATGA-----------GGCA---ATT---TC---ATATAGAAACTTTT-ATATTTGACA TC-ATAGTGTAGGGGAA---GAAACA-TTTTCC >Felis_catus GTAAAACACAC-----CTTCATAT-------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------AAACATAGATTA---TTAATAAGCA--TTCAGTAAACTTTTCTGGATATT----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------TCTTTGTT---GACAAAGTTTT T-----------TTTGTATTGAAGTATAATTGACATGT-AACATTATATTCATTTCAGGTGTACAACAT------GATTC ATTA-TATGT---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------ATATATTGCTAAATGTCCACCACAATAAATCTAATT AATTAAC--ATTCATTACCATATGTAGTTAACAA---ATTTTTTTCTTACAATGAGAAATTTTTTTTAGAATTTTTTTTA AGTTTATTCATTTATTATTTCTGAGAGAGAGAGAGAGAGAGGGAAGGAGAGGGAGAAAGAGAGAGAGAGAGAGAGAGTGT GCACAAGCAGGATGGGGCAGAAAGAGAGGGAGACACAGAATCCAAAGCAGGCTCCAGGCTCTGAGCTATCAGCATAGAGC CCAAACAGGGCTCCAACCCACAGACTGTGAGTTCATAACCTAAGCCGAAGTTGGATGCCTGATTGTGCTACCCAGGCACC CCTCCATGAGAACTTTTTAAGATC---TCTCTCAGCAGTTTTC-AAATATGCAGTACAGTATTATTATTAATTACAGTCA CCATGCTGTATGTTATATTCCCATGA-----------GACAAAGATACTATG---TAGTAGAAACTTTT---GTTTAACA CC-ATAGTGTAGGGGAG---GAAAAATTTTTCT >Manis_javanica ATATAATACCT-----TCATATAT-------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------ATATATATATAGAGAGAGAGAGGTTA---TTAATAAGCA--TTCAATAAACTTTTATGGTTATT----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------TGTT---GACAGATTTTC A-------TGTAGCTTTATTGAAGTATAATTAACAT---AACTTTATATTAGTTTCAGGTGTGCA--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------ATAGATTGCAAAATGATCACTACACTATGTC----T AGTTAAC--ATCTATCACCA---ATAGTTACAG----TGTTTTCTCTTGTGATGAA------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------AATTTTT-AATATATATTCTCTTAGCAACTTGG-AAATGTGCAATATATTATTCTTG---ACTGTAGTCA CCATGCTGTACTTTATATCCTCAGGA-----------GACAAAGATT---TT---AGATAGAAACATTGGATTTTTGACA CC-ATAGTATAAGGGAG---GAAAAACTTTGCC >Sus_scrofa GTAAAATACAC-----CTTCATAT-------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------AAATATGGATTA---------AGTATTTTTCATAAACTT---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------TATC---AACAAAAGTTT T--------------TTATTGAGGTGTAATTGACATA-----------TTAGTGTCAAATATACAAAAT---AATGATTT AGTA-TTTGT---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------ATATATTGCAAAATGATCCTTACCATATGTC----- ---TAAT--ATCCGTCACCATACATAGTAACGAAAGGTTTTTTTTCTTGTGATGAG------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------AACTTTTAAAGATCTACTCTCTTGGCAACTTTC-AAATAGGCAATACAGTATTGTTA---GCTACAGTCA CCAGGTTGTACATTACATCCCTATGA-----------GACAGAAATT---TT---AGATAGAAACATTTGGTGTTTGACA ----TAGTTTAAGGGA----GGGACAATTTTCC >Bos_taurus GTAAAATGCAC-----CTTCATAAAACTGTGGTGTGGGAGAAAACTCTTGAGAGTCCCTTGGACTGCAAGATCAGCCCTG GATGTTCTTTGGAAGGAATGATGCTAAAGCTGAAACTCCAGTACTTTGGCCACCTCATGCGAAGAGTTGACTTATTGGAA AAGACTGATGCTGGGAGGGATTGGGGGCAGGAGGAGAAGGGGACGACAGAGGATGAGATGGCTGGATGGCATCACCGACT CGATGGACATGAGTCTGAGTGAACTCCGGGAGTTTGTGATGGACAGGGAGGCCTGGCGTGGTGTGATTCATGGGGTCGCA AAGAGTTGGACAGGACTGAGTGACTGAACTGAACTGAA--CTGAAGGATA--TTCAGTAAACTT---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------TATT---GACAAA-GTAA C-------TTTTTTTTTATTGAGGTATAGTTTATATAT-AACATTACATTAGTTTGAAGTATATGACAT---AATGATT- AGTA-TTTGTATATGTTGGACAAAGAAGGCAATGGCACCCCACTCCACTACTCTTACCTGGAAAATTCCATGGATGGAGG AGCCTGATAGGCTGCAGTCCATGGGGTCGCTGAGGGTCTGACGCTATTGAGCGACTTCACTTTGGCTTTTCACTTTCATG CACTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTGCCG TCTATGGGGTCGCACAGAGTCGGCCACAACTGAAGCGACTTAGCATATGTTGGAAAATGATCCTTATAATATGTC----T AGCAACC--ATCCATCACCATACATAGAAGCAAT--TTGTGTGTGTGTGTGATGAG------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------AGCTTTC---AATCTACTGTCTTAGCAACTTGC-AGATATGCAGTACAGTATTATTA---GCTGTAGTCA CCATGCTGTACATTACATCCCCATGA-----------CACAGAAATT---TT---AGATAGAAACATTTGATGTTTGACA TTATTAGTGTAAGGAAG---GAAAAATTTTCCC >Equus_caballus GTAAAACACAC-----CTTCATGT-------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------AAGCGTAGATTAAT-CTGTTAAGCA--TTGAGTAAACTTT-CTGGATATTGACAG AGTTTTTC------------------------------------------------------------------------ -------------------------------------------------------------------------------- ----------------------------------------------------------TGGATGTT---GACAAA-GTTT T------AAAAATTTTTATTGAGGTATAATTGACATAT-AACATTATGTTAGTTTCAGGT-TATAACAT---AATGATTT GATA-TTTGT---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------ATATATTGCGAAATGATC---ACAGTAAGTC----T ACTTAAC--ATTTGTCACCATGCATAGTGACAAA---TTTTTTTGCTTGTGATAAG------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------AACTTTT-AAGATCTACTCTCTTAGCAACGTTC-AAATGTGCAGTACAGTATTATTA---ACTATAGTCA CCATGCTGTAGATTACATTCTCGTGA-----------GACAAAGA---------------------TTTGATGTTTGATA TC-ATAGTATATGGGAG---TAAGAATTTTTCC >Ceratotherium_simum GTAAAACACAC-----CTTAATAT-------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------AAACAAGGATTAAT-CTGTTAAGCA--TTCAGTAAACTTTTCTGGATATTTATTT ATTTTTTTTTGTTATTTTATTTATTTATTTTTTCCCCAAAGCCCCAGTAGATAGTTGTATGTCATAGCTGCACATCCTTC TAGTTGCTGTATGTGGGACGCGGCCTCAGCATGGCCGGAGAAGCGGTGCGTTGCTGCGCCCCTGGGATCCGAACCTGGGC CGCCAGTAGCGGAGCGCGCGCACTTAACCACTAAGCCACGGGGCTGGCCCTGGATACTTATTTGTT---GACAAA-GTAT T---TTTTGTTGTTTTTATTGAGGTATTATTGACATAT-AACATTATATTAGTTTCAGGTGTATAAGAT---AATGATTC GATA-TTTGT---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------ATATATTGCAAAATGATCACCACTGTAAGTC----T ACTTAAC--ATGCATCACCATACGTAGTTATAAA----TTTTTTTCTTGTGATGAG------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------AACTTTT-AAGATCTGCTCTCTTAGCAACGGTC-AAATATGCAATATGGTATTATTA---ACTATAGTCA CTGTGTTGTACATTACATTCCCGCGA-----------GACAAAGATT---TT---AAATAGAAACATTTGATGTTTGATA ----TAGTGTAGGGGAG---AAAAAATTTTTCC >Myotis_myotis GTAA---CCCT-----CTTCATAT-------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------AAACATGTATTG---TTAATAAGCA--TTCAGTAAACTTTACTGAATATT----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------TGTT---GACAAGA-TTT T---TATTACTGTTTTTATTCA-GTATAATTGACAT--------TATATTAATTTCAGGTGTACAACGTG--AATGATTT GATATTTTGT---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------ATATATTGCCAAATGATCACCACAATAAAGT----- ---TAAC--ATCCATCATCACACATAGTTACAAA---TTCTTTTTCTTGCAGTGAG------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------AACTTTT-AAGATCTATTCTCTTAGCAACTTTT-AAATATACAGTACAGTATTATTA---ATTATTGTCA T--------------GATCCCCATGA-----------GACAAAGATT--------TTATAGAAACATTTGATGTTTGATA TC-ATAGTAGAAGGGAA---GAAAAAATTTTCC >Rousettus_aegyptiacus ATAAAACACAT-----CTTTATAT-------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------AAAAATAGATTATTATTATTAAGTC--TTCTGTGTGTGTATATATATATA----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------TA--TGTT---GACAAAGGTTT C---TGTTATTGTTTTTATTAAGGGATAATTGA-----------TATATTAGTTTCAACTGTACAACAT---AATGATTT GATA-TTTGA---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------ATATGTTGCAAAATGATCACCACAATAAGTC----T AGTTAAC--AT------CTACACATATTTCAAAA---------TTCTCGTGATGAG------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------AACTTTT-CAGATTTGTTATCTTAGTAACTTTCAAAATGTGCAGTACAGTTTTTTTA---ACTGTAGTCA CCATCCTGTACATTACATCCCC-TGA-----------GACAAAGA---------------------TTTAATGTTTGACG TC-GTAGTGTAAGGGAA---GGAAAAATTGTAC >Condylura_cristata GTAAAATACAT-----CCTCATAT-------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------AAAATAAGCA--TTCAGTAAACTTTTT--GATAAA----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------TAG-T-TT---GACA-GAGCTC T------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------TTATGGAAACATTTGACATTTGATG TCAGTAGTGCAGGGGAGAAAAAAAAAATCTTTC >Erinaceus_europaeus GTAAGATACATTTTTCATATAAAC-------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------ATAGGTTG---CTGAAAAGTCATTTCTGTAAACTTTTCTGGATATT----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------TATTT-TT---GATAAGAATTT T------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------GTTAAAAAGTGTTTATTAT-CGATG TCATGAGTGTAGAGGAC-----AAAAGCTTTCC >Homo_sapiens ATAAAATATGC-----CTTAATAT-------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------AAACAAAGATTG---TTACTAAGTA------GTAAACTTTTCTGGATATT----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------TATTTGTT---GACAGAGATTT T------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------AGATGGAAACATTTAATGTTTGACA TCTG-AGTNNNNNNNNNNNNNNNNNNNNNNNNN Bat158_LINE >L1MA9_3END ----------------------------------------------------------------------------TAAA AAAGTCAAACTCATAGAAGCAGAGAGTAGAATGGTGGTTGCCAGGGGCT-GGGGGGTGGGGG--AAATGG-GGAGATGTT GGTCAAAGGGT-ACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGT-ACAGCATGGTGACTA-TAGT TAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCAC-------------------- ---------CACACAC---------------AAAAAAATGGTAACTATGT----------GAGGTG--ATGGATATGT-- -----TAATTAGCTTGATTGT-GGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATAT ATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA----------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------ >Canis_familiaris TTAAAACAGTACATCTCAAGGTCATT-TGCTGAAAATAGGAACA-GAAAAGT---AAAA--------ATTATT------- -------AACTCATAGAAA-------TAGAAAAGTTGTTGCCATTGACT--GAGAATGGGGTG-AAATAG-GGAGAGGTT TGTAAAATAAT-ACAAATTTTTAGCTAT--AAAATGAATAAGATCCGAGGACCTAATGT-ATAATGTGGTGAGTA-TATT TGATAACACTATACTGTATAGTTGAAATTTGC-AAGATTGTACAACTTAAATGCTCTCTCTCTCATACACACACACACAC ACACACACACACACACACACACACAAACCACCAAAAACATACACACACATACACAGAGAGGAGGTG--ATGGATGTGTGG ATGTATAATCAACCAAATGGGAGAAAAT-----------------GTAAATCAAATCACTATGATGAACA--CTCAAGAT CTTATAATTTTATATTTCACTTGTACCTCAGCAAAACTGACTTTTTTT-----AAAAGATTTTATTTATTTATTCATGAC AGAGAGAGAGAGGCAGAGACACAGGCAGAGGGAGAGAGGGAGAGAAGTAGGCTCCTTGTAGGAGCCTGACGTGGGACTCG ATCCGTGGTCTCCAGGATCACACCCCGGGCTGCAGGCGGCGCTAAACTGCTAGGCCACCAGTGCGGCCCAAAATTGACTT TTTTAAAATTACATTTTTA---GTTCATTTCCTCATTTATTCAGT----ATATGTTAAATATTGACATGGGTCAGGTACA ATTTGG >Felis_catus TTACTATAGTGCATATCAAGATCATTCTGCTGAAAATAGAAACA-GAAGGGT---AAAA--------ATTACT------- -------AACTCATACAAACAGAGAGTAGAAAGATGTTTGCTAGGAGCT--GAGAGTGGGTG--ATGTAG---------- --TAAAAGGGT-ACAAATTTTTAGCTAT--AAGATGAATAAGATCTGAGGACCTAATGTAAAAACATGGTGAGTA-CAGT TGATTACGCTATGTCGTATAGTTGAAATTTGC-AAGAGCATAGTATTTTAATGTTCT----------------------- ---------TACCGAAAAAGAATATGCACATACATACACCGCACACACAT----------GAGATGATATGGCTGTGTGA ATGTGTAATTAACTAGATGGGAGAAAGTCCTTTCACAGTGTGTATGTATGTCGAATCACTATGATGAACA--ATGAATAT CTTATAATTTTATATGTCAAGTATACCTCAGTGAAGTTGGGATTTTTTTT---AA---TCATACT--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TTTTTA---ATGCATTTTCTCACTTATTCACTGAG-GTTTTTTAAATATTTACATGGGTCAGGCACA GTTTGG >Manis_pentadactyla TTATTGCAGTGTATGTCAAGGTCATTCTGCTGAAAAGAGAAACA-GAAAAAC---AGAAAATTAAACACCATT------- -------AATTCATAAAAAGAGAGAGTAGGAAAGTGCTTGCCAGAGTAT--GAGAGTTGGAG--AAATAG-GGAGAAGTT GGGAAAAGGG---CAAACACTCATCTGT--AAGATGAATAAGGTCTGAGGATCTAATGT-ATAACATGGTGACTA-TAAT TGATAACACTGTATTGTATAGTTAAAATTTTCC--GAGAGTACAATTTAAATTTCCT----------------------- ---------TAC--------------------AAAAAA---AAAATGTGT----------GAGATG--AT--ATGTGG-A TGTCTTAATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNN--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------NNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNN >Sus_scrofa TTATTGAAGTGCATATCAAGGTCAATCTGCTAAAAATAGAAACA-GAAGAGT---AAAA--------ATTACT------- -------AACTTATAGAAACAGAAAGTAGAAAAGGGCTTTCCAGGGGCT--GAAGGTAAGGG--AAATAACAGAGAGGTG GGTAAAAGGGT-ACAGACTTTCAACTGT--AAGGTGAATATAGTCTGAGGATCTAATGT-AAAATGAAGTGGCTATTAGT TGATAAAATTGTATTATTTAGTTGAAATTTGCTAAGAAAGTAGATCTTAAGTATTCT----------------------- ---------CACACACGC--------------AAAATC---TAAGTATGT----------GAAATG--ATGGAGATGT-- -----CAATTAACCAGATGGGAGGAAATCCTTTCACAAAGTAAACGTATATTAAATCACTAGGATGAACACTCTAAATAT CTTACAATTT--TGCATTAGTTGCATGCCAATGAAGCTGAAATTTTTG-----AAAAATTACAT---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------GCTTTT---ATTCTTTTCCACATTTTTTCAAT----ATTTATTAA-TATTTTCATGAGTCAGGCATA GTACAG >Bos_taurus GCATTGCACTGCATATCAAGGTCATTATGCTTAAAATAGAAACA-GAAGAGT---AAAA--------ATTACT------- -------CAATTTTAAAAGCAGAAAGGGCAAAAGCGGTTGCCAGGAGCT--GAAGGTAGGAG--AAATAC-AGAGTGGCT GGTTAAAGTCTCGGAAATTTTCAGCTGT--AAGATGAATTAACTCTGAGGAGCTCATGC--AAAGATGGTGGGTATCAAT TGATCCCATTATATTGTATAG-TGAAATGTAC-AAGAGAA-AAGTCTTAAATATTAT----------------------- ---------CACACAC----------------AAAAGA---CAATTATAT----------GAAGTG--ACAGATATGT-- -----TAATTAACTAGACAGTAGGCAATTGTTTCACAATGTGCGGATAGATC-----ACTAGGACAAACA--CTAAATAT CTTACAATTT--TGCATCAGTTACATATCAGTAAAACTGAAATTTTA------AAAAATCACCA---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TCTTTC---ATTCTTTTCCACATTTTTTTAGTGACTATTTAT----TGTTTTAATGGGTCAGGCGTG GCTCAG >Equus_caballus TTATTGTAGGGTGTATCGAGGTCATTCTGCTGAAAATAGACACA-AAAAAGA---AAAA--------ATTATT------- -------GACTCATAGAAAC--AAAGTAGAAAATTGGTTGCCAAGGGTT--GAAGGTGGGGG--AAATAA-GGAGAGGTT GGTAAAAGGAT-CCAAACTTTCCGCTGT--AAGATGAATAAGATCTGAGAATCTAATGT-CAAACATGGTGACTA-TAGT TCATAACACTGTTTCGTATAAGTGAAATTTTCTAGGAGAGTAAAACTTAAATGTTCT----------------------- ---------CACCCCC----TACTTCCCCCCAAAATGA---TATTTATGT----------GAGATG--ATGGATGTGT-- -----TAATGAAATAGATGGG-GAAAATCCTTTCACAATGTATATGTATATCAAATCACCACAATCAGCACACTAAATAT CCTACAATTT--TCTGTCAACTATACCTCAATAAAGCTGAAATTTTTAA----AAAAATCATGC---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TCTTTC---ATTTACTTCCTCATTTATTCAGTGAATATTTAATAAATACTTACATGAGTCAGGTGTA GTTCAG >Ceratotherium_simum TTATTGCAGAGCATATCCAAGTCATTCTGCTGAAAATAGAAACACGAAAAGT---AAAA--------ATTATT------- -------AACTCA-AAAAACAGAGAGTAGAAAAGGGGTTGCCAGGAGCTGGGGGGGTGAGGG--CAATAG-GGAGAGGTT GGTAAAAGGGT-ACAAACTTTCAGCTAT--AAGATGGATAAGGTCTGAGGATCTGATGT-AAATCATGGTGACTA-TAGT TGATAACACTGTATTGTATAAGTGAAATTTGCT--GAGAGTAGAACTTAAATGTTCT----------------------- ---------CATTCCC-----------CCCAAAAAAGA---TAAATATGT----------GTGATG--ATTGATGTGC-- -----CAGTTAACTAGATGGGGGGAATCCTTTTCACAATGTATGCATATATCAAATCACTATGATGAACACTCCAAATAT CTTACAATTTTATATATCAATTATACATCAATAAAGCTGAAATTTAAA-----AAAAACCATAT---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TCTTTC---ATTCATTTCTTCATTTATTCAGTCAGTATTTATTAAGTATTTTCATGAGTCAGGCATA GGTCAG >Myotis_myotis TTATTGCAGTTCATAGTAAGGTAATTCTGCTGAAAATAGAAACC-AAAGAAT---AAAA--------ATTA--------- --------ACATGTAGAAACTGAGAGTAGAAA----GTGGCCAGGGGCT--GCAGGTGGGG---AAATAG-GAAGAGGTT AGTAAATGGGT-GCAAAGTTTCAGGTAT-----------AAGGTCTGATGATCTAAGGT-GAAGCATGATGACTA-TAAT TGATAATG--GTATTGGATAAGTGAAATTTTCTAAGGGGGTAGACCTTAATTGTTCT----------------------- ---------CACACAC-------------ACAAAAAGC---TAATTACAT----------GAGGTT--ATGGAAGTGT-- -----TAATT------ATGGGAGGAAATCTTTTCAAAATATGGACATGTATCAAAACCCTAC----------------AT CTTACCATTTTACATGTCAATTTTATCTTAAT-AAGCTGACATTTTA------AAAAGTTAC------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TCTTCC---ATTAATTTTCTCATTGATTCATAGAGTATTATTTTANNNNNNNNNNNNNNNNNNNNNN NNNNNN >Rousettus_aegyptiacus GT-TTACCGTGTATATCAAGGTCATTCTCTTGAAAATAGAAACT-GAAGAAT---AAAA--------ATTATT------- -------GATACAAAAAAACAGAGAACAGAAAAATGGTTGCCAGGGGCTGGGGAATTGGGAAGTAGGGAG-GGAGAGGTT GGTAAAAGGGT-ACAAACTTTTAGTTAT--AA-ATAAATAAGGTCTGA-AATATGAC-------TACAGTTGATA-AAAT TAATAACACTGTATTGAATAATTAAAATTTCCTAAGAGAGTAGAACTT--ATATTCT----------------------- ---------GACCAATAAAT-----------AAATAAA---TAAATACAT----------GAGGTG--ATGGATGTGT-- -----TAATTAACTCAATGGGAGGAAATCTTTCCACAATGTATACATGTATCAAAACACTATGATGAACA--TTAAATAG CTTACCATTTTATGTGTCGATTTTGCCTCGAT-AAGCTGAAATTAA-------AAAAACAAAGTCAC------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------GCTTCC---ATTCATTTTCTGATTTATTCAGTGAGTATTTGT----TGTCTACATGTGTCAGGCATA GTTCAG >Condylura_cristata TTATTATAGTACATATCAAAGTCACTCTGT--------GAAAAC-AAATATT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------AGAAA---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TTATTC---ATT------------TATTCAAC----AAATATTAAGTACTTATATGCATCAGGCATC TTTTTT >Uropsilus_gracilis TTATTACAGTGCATATCAAGGTCATTCTGCTGAAAATAGAAATA-TAATATT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------AGA------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TTATTC---ATTCATTTTCTCATTTATTCACTAAATATTTATTAGGTG----GATAAGAAAGGCATA GTTGGT >Homo_sapiens TAATTGCAGTGCATATCAAGCTCATTCTGCTGAAAATAGAAACA-AAACATC---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------AACAATGATTATAC------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TCTTTT---GTTCATTTCCTCATTTATTAAATAAGTGTTTATTGAGTATTTACATG----------- GTCCAG Bat159_LINE >L1MA9_3END -------------------------------------------------------------------------------- -----------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATG TTT-------------------------------------------------TGATATACGTATACATTGTGAAATG--- ---ATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTACCATTTTTTTGTG--------TGTGGTGAG AACACTTAAGATCTACTCT------------------------------------------------------------- --------------------------------------------------- >Canis_familiaris AGTCAAAAAT-GAAACTGGTTAATGTCCT-ATAGGGCAATAAAACAGTAAGTTT---TCAGTTATTTC------TTTT-- -TCTGCTAGTTATATGTCAATTGTATAAATGTATGCTT-ATGCAT-AATGTTGCATAAGTTTAAAATGTAAAACATAGTG ACTTGAGGTATATATATATATATATATATATATATATATATATATAGCGAAATGATATATGTTTATATTGTGAAATG--- ---ATCACCATAATAAGTTTGGTTAAT--ATCCATCACCTCACATA------ATTTTTTTTCT--------TATGATGAA AATTTTTAA-------------TGAGTTATTATTTCT---ATCAGGCCATAAAACAAAACAAAACAAAACAAAACCCTCT ATTTCTACAGGATGAAAA-TGTAC------------------TTCAAGTCT >Felis_catus AGTTAGAAAT-AAAACTGGTTAATGTCCT-ATAGGGCAATAAAACAGTAAACTT---TCAGTTATTGT------CTCT-- -CTCTCTCTTTTTTTGCTAGTTTTATTGATATACAGTTGACATAT-AGCATTGTATAAGTTTAAAGTATATAACATAATC ATT-------------------------------------------------TGATGGATGGATATATTATGAAATG--- ---ATCACCACAGT--GTTTGGTTAAT--AGCCATCACCTCACAGAGTTATGATTTTTTTTCT--------TATGATGAC AATTTTTAA-------------AGAGTTAATA-TTCT---ACCAGGCCAAAAA-----------------ACAAATT-GG ATTTCTACAAGATCAAAA-TGTACAAGTTACTGTGT---AACTTTTAGTCT >Phataginus_tricuspis AGTTGGAAGC-AAAACTAGTTAATGTCCT-ATAGGGCAATGAAACAGTCTGCTT---GGAGTTACTTTTTCAAATTCT-- -TTTTCTAGTT---------TTATTGAGATGTA-ATTG-ACATAT-AACATTGCATAAGTTGAAAATATACAATATAAAG ATT-------------------------------------------------CGACATATGTATATATTGCAAAATG--- ---ATCTCCACAATAA-----GTTAAC--AT-CATCATCTCACATAGTTACAATTCTTCTTCTT-------TGTGATGAG AACTTTTAA-------------TGACTTACTGCTTCT---ACCAGAC---AAA-----------------AACACTT-AT ATTTCTGGAGGATTAAAA-TGTACAAGTTCGCGTGC---AACTTTTCATCT >Sus_scrofa AGTTCGAAAC-AGAACTGATTAATGTCCT-ATAAGGCAATAAAATAGTAGGCTT---TGAGTTATTAT------TTTT-- --------------TTCCAGTTTAGTTGAAATATAATTGACATGT-AACATTATATAAGTTCAATGTGTACAACATAATG ATT-------------------------------------------------TTATATATG-ATATAATGTGATATATGA TATAATGTGATAGTAAATTTAGTTAAC--ATCCATCACCTCATATACTTACAATT-TTTTCCT--------TTTGATGAC AACTTTTAA-------------TGAGTTATTGTTTCT---ACTAG-----AAA-----------------AAAATTCAGT TTTTCTAGAGGGTGAAAA-TCTACAAG---------------TTTTAGCCT >Tursiops_truncatus AGTTAGAAGC-AAAACTGGTTAATGTCCT-ATAGGGCAATAAAACAGTAAGCTT---TGAGTTATTGT------TTCT-- ---------TTTTCTCCCAGTTTTATTGAAATATAATTGATATAT-AACATTGCATAAGTTCCAGGTGTACAACATAATG ATT-------------------------------------------------TGATATATG-ATATATTTTGA-ATG--- ---ATTAGCACAGTACGTTTAGTTAAC--ATCCATCACCTCACATACTTTCAATTTTTTTCCCT-------TGTGATGAG AACTTTTAA-------------TGAGTTATTTTTTCT---ACCAGACCAAAAA-----------------AAAATTTTAT ATTTCTACAGGGTGAAAA-TCACCAAGTTAGCATGT---AACTTTTACCCT >Equus_caballus AGTTAGAGGC--AAACTTGTTAATGTCCT-ATAGGGCAATAAGACAGTAAGCTT---TGAGTTATTAT------TTCT-- --------CTTTTTTTCTAGTTTTATTGAGATATAGTTGACATAT----GTCATATAAGTTTAAGGTGTACTACGTAATG ACT-------------------------------------------------TGATATATGTAGATACTGTGAAATG--- ---ATTACCACGATAAGTTTAATTAAC--TTCCATCACTTTGCATAGTTACAATTTTTTCCCCT-------TGTGATAAG AACTTTTAA-------------TGAGTTACTGTTTCT---ACCAGGC--AAAA-----------------AACATTT-GT ATTTCTACAGGATGAAAA-TCTACAAGTGAACACGT---AACTTTTAGTCT >Ceratotherium_simum AGTTAGAAAC-AAAACTGGTTAATGTCCT-ATAGGGCAATAAGACAGTAAGCTT---TAAGTTATTAT------TTCT-- --------CTTTTTTTCTAGTTTTATTGGGATATAATTGACATAT-AACATCATATAAGTTTAAGGTGTATTATGTAATG ACT-------------------------------------------------TGATATATGTAGATACTGTGAAATG--- ---ATTACCACAATAAGTTTAGTTAAC--ATCCATCACCTCACGTAGTTACAATTTTTTTTCCT-------TATAATGAG AACTTTTAA-------------TGAGTTATTGTTTCT---ACCGGAC--AAAA-----------------AACATTT-GT ATTTCTACAGGATGAAAA-TCTACAAGTGCGCATGT---AACTCTTAGTCT >Myotis_myotis AGCGGGAAAC-AAAACTGGTTAATGTCCTAATAGGGCTATAAGACAGTAAGCTT---TGAGTTATTGC------TTCC-- ---------TTTCTTTCTAGTTTTA------TATAATTGACATAT-AACATCACATAAGTTTAAGGTGCACAACATAATG ATT-------------------------------------------------TAATATATGTATGTATTAGGAAGTG--- ---ATCACTGCAATAGATTTAGTTAGC--ATCCAGCATCTCACATAGTTACAATTTTTTTCCT--------TTTGACAAG AACTTTTAA-------------TGAATTGTTGTTTCA---ACTGGAC---AAA-----------------AGCATTT-GT ATTTCTATAGGATTAAAACTCTATAAGTGAGCATGT---AACTTTTAGTCT >Rousettus_aegyptiacus AGTTAGAAAC-AAAACCGGTTAATGTCCT-ATAGGGCAATAAGACAGTAAGTTT---TGAGTTACTGT------TTCT-- ------TTTTTTTTTTCTGGTTTCATTGAGTTATAATTGACATAT-AACATCG-ATAAGTTTAAGCTGTAAAAGATAATG ATT------------------------------------------------------TATGTATATATTGGGAAATG--- ---ATTACCACAATAAGTTTAGCTAAT--ATTCATCACCCTACATGGTTACATTTTTTTTAAATAAGAGTCTTTAATAAG AGTCTTTAA-------------TTATTTATTGTTTCT---ACTAAAC--AAAA-----------------AACATTT-GT ACTTCTACAGGATGAAAA-TCTACAAGTGTTCATGT---AACTTTTAGTCT >Condylura_cristata AGTTATAAATAAAAACTAGTAAATGTCCA-TTAGGACAATAAAACAG--AG--T-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------AAAATTGATGTTTCT---ATTAGACAAAAAA-----------------AAAAT---GT ATTTCTTCGAGATGAACA-TCTACAAGTTAGCTTCT---GGTATTTAGTTT >Uropsilus_gracilis AACTACGAAC-AAAACTGGTTCATGTCCT-ATAGGGAAGTAGAATAGTAAGCTT-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------TGAGTTGATGCTTCT---ATTGGACAAAAGA-----------------AAAATC---- ATTTTTACAGGATGAAAA-TATACAAGTTATCTTGTATAAGTTTTTGGCCT >Homo_sapiens AAC-ATAAAT-AAGACTGATTAATGTCCT-GTAGAGCCATAAAACAGTTAGCAC-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------TGAGTTATTGTTTCT---ACTAGAC---AAA-----------------AACATTT-CT ATATCTACAGAATGAAAA-TCTATAAGTTAACATGT---AACTTTTAGTCT Bat165_LINE >L1MA9_3END -------------------------------------------------------------------------------- ------ATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCAC CACACACAAAAAAA----TGGTAACTATGTGAGGTGA--TGGATATGTTAA-TTA---GCTTGA-TTGTGGTAATCATTT CACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAAT--TTTTATTTGTCAATTATACCTCAA TAAAGCTGGAAAAA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------ >Canis_familiaris CCTAGTACATCTAC----AAAAGAATATAGTAAATTACTT----AGTAAT-AAT-----------------CTGGGACTA TAG----------------CCAATAATAATGTATCATATACTTGAAAGTTGCTGAGA--CTAAATCTTAAAAGTTTTTAT TACAATAGAAAAAA---CTTGTAACTATGTGTGATAA--TAG--ATGTTAA-CTATTAACTAGACTTGTAGCGATCATTT CATGGT----ACAAATAGTCAATCATTATGTTGTACATCTCAAC----TAATGT-----TATTTATCAATTATATCTCAA ------AAAGGATTCTTTTTA---AAGATTTTATTTATTTATTCATAGATACATAGAGAGAGAGGCAGAGACACAGGTAG AGGGAGAAGCAGGCTCCATGCAGGAAGCCCGATGTGGGACTCGATCCCGGGTCTCCATGATCACACCCCAGGCTGCAGGC GGCGCCAAACCACTGCACCACCAGGGCTGCCCTCAAAAAGGAAATTTTTTAGGGACTCCGGAGTGGCTCAGTGGTTGAGC GTCTGCCTTTGGCTCAGAGCGTGATCCTGGAGTCCCGGAATCAAGTTCTGCATCAGGCTCCCCGCACGGAGCCTGCTTCT CCATCTGCCTGTGTCTCTCATAAATAAATAAATAAAATCTTTAAAAATATTTTTTGAAGATTAAA----CTG---ATAAT TATTATAT--TGA-GGTCATTCTCTGAACTTATTCTTATATTTT--AGTATAAACCCTAAAGTGTAAGT----------- ---------------CTCAAGCAT >Felis_catus CCTAGTACATCTACATTCAAAAGAATA-----AATTACTTAGTAAGTGAT-AATT---AAGATTAACCTATCTGTGATTA TAG----------------CTAATAATAATGTATCATACATCTGAAAGCCGCCGAGA--GCACATCTTAAAGGTTTTCAT CACAAAAGGGAAAACAATTTGTAACTATGTGTGATAA--TGA--AAGTTAA-CTA--GACTTG--TTGTAGTGATCATTT AGCAATATATATAAATATGGA------ATGTTGTATACTTGAAC----TAATGT-----TATATGTCAATTATATCTCAA ---------AAACATTTTTTA---AAGAT--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------TAAA----CTG---ATAGC TATGATATTCTGA-GGCCATTCTCTGAACTTAATCTTTTTACTT-GAGTATAAATCCTAAAGTGTAAGT----------- ---------------CTGACGCAT >Manis_pentadactyla CCTAGTATACCTACAATAAAAAGAATAC--TAAATTTCTCAGTAAGTGATAAATT---AAGGTTAAACTATCTGTGACTA CAG----------------TTAATAATAATGTGT-----ATTTGAAAGCTGTTGAGAAAGTAGATTTCAAAAGTTCACAT CACAAGGGAAAAAA--------AAC--TATGTGATGA--CAG--TAGTTAACCTA--AACTTG--------TAATCATTT TGCCATGTATACAAATACTGAATCATTATGTTGTATACAGGAGAAC--TAGTAT---GTTATGTGTCAGTTACATCTCAG ----TAAAAAA--CTTTTTAA---AAGGT--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------TAAACTACCTG---GTAAC TACAATATCCTAA-ATTCAATCACAGAACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------- ---------------NNNNNNNNN >Sus_scrofa CCTAGTACATCTACAATCAAAAGAATGCAGTAAATTATTT----TGTGAT-AATT---AAGACTAAACTATCTGTGACTG TAG----------------CTGAGAATACTGTATTGTATATTTGAAAGTTACTGAGAGAGTAGATCTTAAAAGTTCTCAC CACAAGGAAAAAAA----CAGTAAC--TGTGAGACGG--TGG--ATGTTAA-CTA--AACTTG--TTATGAGGACCATTT CACAACAGACACATAGAACAAATC---ATGCTGGACACCCGAAAC---TAATGT------------CAATTACTTCTCAA TTTTAAAACAA------TTTA---AAGAT--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------TAAACTATCCA---ATAAC T--------CTGA-GCTTATTCTCCAAA---------------------------------------------------- --------------------GCAA >Tursiops_truncatus CCTGGTACATCTACAATCAAAAGAATATAGTAAATTACTC----TGTGAT-AATT---AAGATTAAACTATCTGTGACTA CAG-------------------TTAATACTGTATTGTATATTTGAAAGTTGCTAAGAGAGTAGATCTTAAAAGTTCTCAT CACAAGAAAAAAA-----TTATAGC--TGTATGATGA--TGG--ATGTTAA-CTA--GAC-----TTGTTATGATCATTT TGCAATATACACAAATACCGAATCGCTATGTTGCACACCTGAAAC-----ATGT-----TATATGTCAATTATAGCTCAA CTTTTAAAAAA-----TTTTT---AAAAT--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------TAAACTATCTT---ATAAC TACAATATTCTAA-GGTCATTCTCTCAA----------------------TAAATCCTAAAGTATAAGT----------- ---------------CTGANNNNN >Equus_caballus CCTACTACATCTACAATCAAAAGAACATAGCCAATTACTTAGTAAGTGAT-AATT---AAGATTAAACTACCTGTGAC-- -----------------------------TGTATTGCATATTTGAAGGTTGCTAAGACAGTAGATGTTAAAAGTTCTCAT CACAAGGGGAAAAA-AGTTTGTAAC--TGTGTGATAA--TGC--ATGTTAA-CTA--GACTTC--TTGTGGTGATCATTT CACAATATATACAAATATCGAATC---ATATTGTTTACCTGAAGC---TAATAT----------GTCAATTATATCCCAA ----TAAAAAA---TTCTTTT---AAGAT--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------TAAACTATCTG---CTAAC TACAATTTACTGA-AGTCATTCTCCAAATTTAACCTTTTAAGTT-TAGTATTAATCCTAAAGTGTAAGT----------- ---------------TTGAAGCAT >Ceratotherium_simum CCTAGTATATCTACAATCAAAAGAACATAGTCAATTACTTAGCAAGTGAT-AATT---AAGATTAAACTATCTGTAACTA TAG----------------GTAATAACACTGTATTGCATATTTGCAAGTTGTTAACACCATAGATCTTAAAAGTTCTCAT CACAAGGGAAAAAA-AATTTGTAAC--TGTGTGATGA--TGG--ATGTTAA-CTA--GACTTG--TTGTGGTGATCATTT CACAATATATACAAATATCAAATC---ATGCTGTATACCTGAAAC---TAATATAAGGTTATAAGTCAATTATATCCCAA ----TAAAAAAAATTTTTATT---AAGAT--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------AAAAACTATCTG---ATAAC TACAATTTATTGA-AGTTGTTCTCCAAACTTAATCTATTACTTG--AGTGTGAATACTAACGTGTAAGT----------- ---------------CTGAAGCAT >Myotis_myotis TCTACTACATCTGC-ATCAAAGGAGTA-----AATTACTT----CATGAA-AATA---AAGATTAAAGTATCTGTGACTA TAC----------------TTAATAATACTGTATTGTATATTTGAAGGTTGCTAAGA--GTACATCTTAA--GTTCTAAT AACAAGGGGAAAAA----------CTAAGAAAAACAA-------ATGTCAA-TTA--GAC-----TAACGGTGATCATTT CACAATATATACAAATATCGAATTATCATG-TATACACCTGAAAC---TAATATAGTGTCATATGTCAGTTACATTTCAA ---TTAAAAAAAAATTT---------AAT--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------TAAACTTTCTG---TTAAC ------ATTTTGA-GGTCATTCTCCAAACTTAATATTTTATTTT--AGTATAA-TCCTAAAGTATAAAT----------- ---------------ATGAAGCAT >Rousettus_aegyptiacus CCTAGTATATTCAT-ATCAGAAGAATACAGTAAATTACTA----AGTGAT-AATT---AAGATTAAACCATCTGTGGCTA CAG-------------------TCAATACTATACCGTTTATCTGAAAGTTACTAAGAGAATAAATCTTAAATGGTTTTGC AATAAGTGGGAAAA-------------AATGAACTGAATTGG--ATGGTAA-CTA--GAC-----TTACGGTGATCATTT CAGAATATGTACAAACACTGAATC---ATATTGTACACCTGAAACTAATACAGGGTTGTTATATGTTAATTATGGCTCAT ----TAAAAAAAAAATTTTTT---AAGAT--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------TAAA--GTCT-----TAAT ------AT-CTAA-GGTCATTCTCTAAACTTGATATTTTATTTA-GTATATAAATCCTAAAGTGTAAAG----------- ---------------ATGAAACAT >Condylura_cristata CTTAGTACATTTACAATCAAAAAAATAT----------------AGTGAT-TATT------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------AACAT--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------TAAACTATCTG---ATGAC TATAAAACTGTAAATATTATTCTTTGAATTTAACCTT-TACTTT--AGTATAAATCCTAAAATATAAGTGA--------- ---------------GTGAAGCAC >Scalopus_aquaticus CCTAGTACCTTTACAATCAAAAGACT-T----------------ATTGAT-TATT------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------AAGAT--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------TAAACTATCTG---TTAAC TACAAAGCTGTAAAGATCATTCTTTGAATTTAACATTTTACTTT--AGTATAAATCCTAAAGTGTAAATGTAATGTGTAA TCCGAAAATCTAAGTCTGAAGCAT >Homo_sapiens CCTA--ACATCTATAATCAAAAGAATATAGTAAGTTACTT----AGTGAT-GTTT------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------AAGAT--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------TAAACTATCTG---ATAAC TACAATATTCTGA-GATTATTCTCTAAACTTAATCTTTTACTTTAGTATATAAATCCTAAAGTATAAGT----------- ---------------CTGAAGCAT Bat166_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------GGGAAATGGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAG ATCTAATGTACAGCATGGT-------GACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGAT CTTAAGTGTTCTCACCACACA----CAAAAAAATG-------GTAAC--TA--------------------------TGT GAGG-TGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTT-GTA CACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGG------AAAAA----------------- -------------------------------------------------------------------------------- --- >Canis_familiaris TAAAGCTTTATTCA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------TCATTCTTC---CAAATGGC-TAATGG--CAAACTGG-AAAGAGTT---AAAAAT GTGATTGAAT---------------AAAGATGATCAAAAGGTGCAAACTTCCAGCTGT--AAGAT----AATCACAGGGG GTGTAATGCACAACGGGAT-------GACTAGAGGTAACACTACTGCATGCTATGTTTGAAAGTTACTAAGAGAATAAGT CCTAAAAGTTTTCATCATTAG----AAAAAAATATTTTGGGGGTAACTATGAGTTGCCTCATATGAGTTCAATCCCCTAT GAAA-TGATGG--ATGTTGACTAAACTTA-TGTGGTAACCATTTTACAA-ATAT--ATATGCCACGTGTTTATGCC-ATA CAC-TTAAATTTA-TGTAGTACTGTATGTCAATTTTATCATAATAAAACTGA------AAAAAAATTCCAAAGTAAAAAA --------------GAAAATATGATTGAAT---TAAAAGCTCTAATAAATGTCAGCTTATTGCTCCAATAATTGCTATTG CTT >Felis_catus TAAGTCTTTCTCCA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------TCATTCTCT---CAAATGGC-TAATGG--CAGACTGG-AAAGAGTT---AAAAAT GTGATTGAAT---------------AAAGATGGTCAGAAGGTCCAAACTTCCAGTTGT--AAGATAAATAATCACAGGGG ATGTAATGCACAGCATGAT-------GACTATAGTTAACACTTCTGTATACAATATTTGAAAGTTGCT------------ -------------------------------------------------------------------------------- -----------------------------------------------------------------------------GTA CCACTTAATCTTA-TACAGTGCTGTATGTCAATTATATCTCAATAAAACTA-------AAAACAATTTTAAATTAAAAAG AAAATGAAAGA---CAACATATGATTGAAT---CCGAAGCTTCGATCAATGTCGCCTTAGTGCTCCAACAATTGCTATTG CTA >Manis_pentadactyla TAAA----TATTCA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------CCATTCTTT---CAAATGGC-TAATGA--CAGACTGC-AAAGAGTT---AAAAAT GTGATTGAAT---------------AAAGGTGGTCAAAAAGTACAA-TTTATAGTTAT--AAGATAAAAAATTACTGGGG GTATAATACACAACATGATGACTGCAGACTACAGTTAACACTTC-ATATGGTATATTTGAAAGTTGCTAAAAGAGTAAAT CTTAAAAGTTTTCACAAGGAA----AACAAAAAAATTTTT--GTAAC--TA--------------------------TGT GAGATTAATCA--ATGTGAACTAAATT------GGTGATCATTTTGCATTATCT--GTATATCAAGTCA---TGCT-GTA TACTTTAAATTTATTATAACACTGTATGTCAATTATACCTCATTAAACTTGA------AAATTAAAAAAGGAA------- --------------AATAATATAATTGAAT---CAGAAGCTCTAATAAATGTCAGCTTATTGTCTCAACAATTGCTATTG CTG >Sus_scrofa TGAAGTTTTAATCACTGTGGCTTTTTTTTTTTTTTTTTTTCTTTTTAGGGTCAGACTTGCAGCATATGGAGGTTCCCAGG CTAGGGGTCAAATCGGAACTACAGCTGCCAGCCTACACCACAAGCCACAGCAACGCCAGATCTGAGCCAAGTCTGTGACC TACACCACATCTTCTTAACCCACTGAGAGAGGCCAGGGATCGAACCCACAACTTCATGGTTCCTAGTCGGATTCTTTTCC ACTGCGCCATGGTGGGAACTCCGAGTCATTGCTTTTTCAAATGGC-TAAAAG--CAGATTGG-AAAGAGTT---TAAAAT GGGATTGAAT---------------GAAAATGGTCAAAATACACAAACTTCCAGTTAT--AAGATAAATAATTATTGGGG AT-TAATGCACAACCTGAT-------GACTGTAGTTAAC--TGCTATATGGTACATTTGAAAGTTGCGAAGGGAATAAAT TCAAAAGTTTCTCATCACAAG----AAAAAAAGTTTTT----ATAAC------------------------------TAT GAGG-TAATAG--ATGTTAACTGAGCTTATTGTGTTAATCATTTTGCAATATAT--GTAGGTCAA-TCATTATGTTGGTA CACCTTAAATTTA-TACAGTGCTGTATGTTAATTATA--ACAATGAAACTGA------AAAATAAAAATAATAAAAAGAT ATAAAAAATTT---AAAAACATGATCAATT---TGGAAGCTCTAATAATTGTCAGCTTAGGGCTCCAATAATTGCTATTG CTA >Bos_taurus TGAATCTTTAATCA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------TCATTTTTT---CAGATGGC-TAATAG-----ACTGGAAAAGAGTT---TAAAAT GTGAGTGAAT---------------GAAGGTGGTCAATAGATACAACCTTTCAGTTAT--AAGATAAATAATTACTGGAG ATGTAAGGAACAACATAAT-------GACTACAGTTAACACTGCTGTATAATATATTTGAAAGTTGCTAAAGGAATAAAT CCTAAAATTTCTCATCACAAG----GAAAAAAAATTTT----ATAAC--TA--------------------------TAG -----------------TCATTGAACTTACTGT--TAATAATTTTTCAGTGTAT--GTAGGTCAAGTTATTATGCT-GTG CACCTTAAATTTA-TAGAGTGCTGTATGTCAGTTATATCTCAATAAAACTGA------AAAAGAAAACTAGTAAAAAGAA ATAAAAATTTT---AAAAATATGATGGATT---CAGAAGTTCTAATGAATGTCAGCTTACAGCTCAAACAATTGCTATTG CTA >Equus_caballus TAAATCTTGATTCA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------TCATTTCTT---CAAATGGC-TAATGG--CGGACTGG-AAAGAGTT---AAAAAT GTGATGGAAT---------------GAGGGTGTTTAAAACGTACAAACTTCCAGTTAT--AAGATAAATAAATACCGG-G TTATAATGCACAACACGAT-------GCCCATAGTTGACATTGCTGTATG-TATATTTGAAAGTTGGTAACAAAGTAAAT CCTAAAAGTTCCCATTACAAG---GGAAAAAAAATTTTTT--GTAAC--TA--------------------------TAT GAGG-TGATGG--ATGTTCACTAGATTTATTGTGGTGATCATTTTGCAATATAT--GTA-GTCAAATAA----------- ----------------------------------------------------------AAAAGAAAAAAGAAAAATAAAT AAAAGGA-------AAAAACATGATTGAAT---CAGGAGCTCTAATAAATGTTAGCTTATTGCTGCAACAATTACTATTG CCA >Ceratotherium_simum TAAAGCTTTATTCA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------TCATTCCCT---CAAATGGC-TAATTT--CAGACTGG-AAAGAGTT---AAAAAT GTGATTGCAT---------------GAGGGGGGTCAAAAGATACAAAATTCCAGTTAT--AAGATAAATAATTAATGG-G TCGTAATGCATAACATGAC-------GACTACACTTCACATTGCTGTAAGGTATGT------------AAGAGATTAAAT CTTGAAAGATCCCATCACAAGAGGAAAAAAAAAATTTTTTTTGTAAC--TA--------------------------TAT GAGG-TGATGG--ATATTAACTAAGCTTATTGTGGTAATCATTTTGCAATATAC--GTAAGTCAAGTGA----------- ----------------------------------------------------------AAAATAAAAAAAAGAAAAAAGA AAAAAAAA------GAAAATATGATTGAAT---CAGAAGCTCTAATAAATGTTAGCTTATTGCTCCAACAATTACTATTG CTA >Myotis_myotis TA-TGCTTTCTTCC------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------TTATTCTTT---CCAATGGCTAAATGG--CAGACTGG-AAAGAGTT---AAAAAT ATGGT----C---------------TAAGGTGGGCAGAAGGTACAAATTTCCAGTTAT--AAGATAAATAATTACTGGGG ATGGAATGTGTAATATGAT-------GACTACAGTTAACATTGCTGTACGGTATGTTTGATAGTTGCT--CAGAGTAAAT TCTAGAAGTACTCATCACAAG----GAAAAACATTTTATTTTATAAG--CA--------------------------CAT AAGG-TAATGG--ATGTTAACTAAACCTACTGTGGTGATCA-TTTGTAATATAT--GTACATCAAGTCATCACGCT-GTA CACCCTCACTTACATATGGTACTGTGTGTCAATTATATCTCGATAAAACTGG------AAAATAAACCAAAAAAAGGAGA AA------------AAATACATGATTGAAT---CAGAAACTCGAATAAGCGTCAACTTATTGTTCCAACCATTGCTATTG CTG >Rousettus_aegyptiacus TAAAACTTTATTCA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------TCATTCTTT---CAAATGGCTTAATGG--CAGACCAG-AAAGAGTT---AAAAAT GTGATTGAAT---------------GAAGGTGGTCAAAAGGTACAAACTTCCAATTAT--AAGATAAATAATTATTAGGG ATGTGATGTGAAAAATGGT-------GCCTATAGCTACCACTGCTGTA-GGTATGTTTGAAAGTTGCTGATAGAGTAAAT CCTAGAAGTTCTCATAAGAAG----AAAAAAAAAGTTTTTTTGTAACTATA--------------------------TAT GAGG-TTATGG--ATGTTAACTAAACTTAATGAGGTAATCATTTTGTGATATAT--GTATGTCAAGTTATCATGCT-GTA CACCTTCAACTTA-TACAGTGCTATATGGCAATTATATCTCAATAAAACTAACCAAATAAACAAAAATAAACAAACAAAC AAAAGAAACAG---AAAAACATGATTAAAT---CAGAAGCTCTAATTTATGT--------TGCTCCAACATTTGCTGTCG CTA >Condylura_cristata TAAG------TTTA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------ACCTTTTTTAAAAAAATGGC-TAATGG--CAGACATT-AAAGAGTT--------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------AAAAAAATAACTGAGT---CAGAAACTCTGCCAAATGTTATCTTATGGCTCCAACATTTACTACTG CTG >Sorex_araneus CATAGTTTTACTTG------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------CCATATTTT-TCCAGTTGG--TTACAGTGCAGACAGC-AAGGAGTT--------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------AAAAATTAGAATTCTT---TAGAAGCT-----------------GTGGCACCAATAATTGCTGTTG TTA >Homo_sapiens TAATGCTTTGCTTA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------TCATTCTTT---CAAATGGC-TAATGG--CTAACTAG-AAAGAGTT--------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------AAAAATATGATTGAAT---CAGAAGCTCTAATAAATGTTAGCTGATTTCTCCAACAGTTACTAAAG CTA Bat171_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------TTTTTC------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------CAGCTTTATTGAGGTATAAT--------------------------- TGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGAT-ATACGTATACATTGTG-AAATGATTACCA CAATCAAGCTAATTAACATATCCATCACC--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------- >Canis_familiaris TAAG-AAATTTTCCAATCCATGTAAAAGTTGCAAGATGCTATATGATTT---CA-----------TTAATTTTA---TTG AGAGTTAAGTAGTTTTATTTTTTTGAAATCTCACTTCTTTATTTCCAGACTGCGTGTCAGTTTTATTTGCATTGAATACC ACATAATAATCATGTCAATGTAAAATATTAAAGAGGGACTAGAGTGTCATTGTAAGGAAATATCTTCATCAACTAAATTA CCTTTTTTTTTTTTTCTTTTTTACTTTTTTAGTCAGGTTTATTGAGGAATAATTTAGAGAATTAAGGAATTTTATTGAGG TGACATAG-ATTATTATGTCAGTTTTAGGTATATAACATGA---TTTGATAATACTTATATACTGTA-AAATGATTACCA CAGT----TTAGTGA--ATATC----------TAATAATTCA-T---GTTTGAAA----TCACC-TTGG-------AAAG T-------AGA--CT----------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------TTTCTT---TTGGTTGTTAAA >Felis_catus TAAG-AAATTTCCCAATCCGTGTGGAAGTGGCAAGATGCTATCTGATTT---CA-----------ATAATTTAA---TTG AGATTGAAG----------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------TAATTTTATTGAGAGAG--C--------------------------- TGACATAT-AATATTGCATCAGTTTTAGGTATGTAATATGATGATTTGAC-ATATGTATATACTATA-AAATAATTACTG CAGT----TTAGTGA--CTATC----------CAAACATTCA-G---GTTTGAAG----TCACCCTTGG-------AAGG T-------AGAC-------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------TTTTTT---GTTGTTGTTAAA >Manis_pentadactyla NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT---CA-----------GTAATTCAG------ ---------------GGGTTT------CCCCCTGCCC------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------TGGTTTTACTGAGATACAAC--------------------------- TGACATAT-AATATTAAATTTGTTTTAGTTATTTAACATGACGATTTGAT-ATATGTATATATTGTG-AAATGA-CAGCA CAGTAAATTTAGTTA--ATATG----------CAATAATTCA-G---GTTTAAAG----TCACC-TTGG-------AAGG A-------GGAATTTTTT-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------TTTTTT---TTGGTTATTAAA >Sus_scrofa TAAA-AAGTTTCCCAATTCATGTGGAAGTGGAAACATGTTTTCTGATTT---CA-----------ATAATTCAG------ ---------------GGGTTC-----------CCCTC------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------CCATTTTATTCAAATATAAT--------------------------- CGATATA--AACATTATTTTAGTTTTAGGTGCATACTGTGATGATTTAAT-A----------------AAGTAATTACTA CAACAGGTTTAGTTA--ACATC----------CAAGAGTTCA-G---GTTTAAAG----TCACC-TCGGAAAATAAAAAA A-------AAAGTCTTTTTGCCTTTTCTAGGGCCGCTTCCCATGGCATATGGAGGTTCTCAGGCTAGGGGTCAAATCAGA GCTGTAGCCACCAGCCTACGCCAGAGCCACAGCAACGCGGGATCTGAGCCTCGTCTGCGACCCACACCACAGCTCATGGC AACGCCAGATCCTTTACCCACTGAGAAAGGCCAGGGATCGAACCCGCAACCTCATGGTTCCTAGTCGGATTCATTAACCA CTGCGCCATGACGGGAACTCCTAAAAAAAATTTTTT---TTGGTTGTTAAA >Bos_taurus TAAAAAAATTTCCCAACTCATGCGGAAGTGGCAAGATGTTTTCACAATT---CACAATTGCTTTCACAATTCAC------ ---------------AATTGCTTTCACAATTTCCTTC------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------TCATTTCACTGAAATATAACT-------------------------- TGAGATAT-AACACTGCATTAGTTTTAGGTAAATAACATGATGATTTAAT-ACATGTATGTATTGTG-AAATGATTACCA CAGTAAATTTAGTTA--ATACC----------CAATAATTCA-G---GTTTAAAG----TCACC-TTGG-------CAGG T-------AAAATTTTTT-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------TTTTTT---TAGGTTGTTAAA >Equus_caballus TAAGAAAATTTCCCAATCCATGTGAAAGTTGCAAGATGTAATCTGATTT---CA-----------ATAATTTAG------ ---------------AATTTC---------CCCCCTC------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------CAGTTTTATTGAGATATAAT--------------------------- CGACATAT-AACATTGTATTGCTTTTAGGTGTATAACATAATGATTTGAT-GTATGTATATACTGTGAAAATGATTACCA CAATAAGTTCAGTTA--GTATC----------CAATAATTCA-A---GTTTAAAG----TCACC-TTGG------AAAGG T-------GGAATCT----------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------TTTTGT---TTGGTTGTCAAA >Ceratotherium_simum TAAGAAAATTTCCCAATCCATGTGGAAATGGCAAGATGTTATCTGATTT---CA-----------AAAATTTCG------ ---------------AGTTTT-----------TCCCC------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------CAGTTTTATTGAGATATAAT--------------------------- TGACATAT-AACATTGTGTTAGTTTTAGGTGTATAACATGATGATTTGAT-ATATGTACATATTGTGAAAATGATTACCA CAATAAGTTTAGTTA--ATATC----------CAATAATTCA-G---GTTTAAAG----TCACT-TTGG-------AAGG T-------GTAATC------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------TTTTTT---TTGGTTGTTAAA >Myotis_myotis TAAAAAAAATTTCCCAATCCTATGGAAGTGGCAAGGTGCTATCTGATTT---CA-----------TTAATTCAG------ ---------------GGGCTC---------CCACCCC------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------CAGTTTTATTAAAATATAAT--------------------------- TGACATAT-AACATTGTACTAGTTGTAGGTGTATAACATGATAATTTGAT-AGAAGTAT-TATTGTG-AAATGATTACTA TAATAAGCTTAGTTA--ACAGC----------CAGTAATTCA-G---ATTTAAAG----TCACT-TTGG-------AAGG A-------ATAATCTTTTTGTTTGTATATTTG------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------TTTTACTGGTTGGTTGTTAAA >Rhinolophus_ferrumequinum TAAGAAAATTTCCCAATCCACATGGAAGTGGCAAAATGTCATCTGATTT---CA-----------ATAATTCAG------ ---------------GGTTTC--------CCCACCCC------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------AGATTTACTGAGATATAAC--------------------------- TGACATGT-AACATTGTTTTAG------GCATATAACATGATAATTTGAT-ATATGTATATAATGTG-GAAGGATTACCA CAGTAAGTTTAGTTA--ATATT----------CAATAATTCA-G---GTTTAAAGTAACTCATC-TTGG-------AAGA A-------ACAATCTTTT-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------TTCTTTTTTTTGGTTGTTAAA >Condylura_cristata TGAGAAAATTTCCCAATCCATGTGGAACTGGCAAGATGTTATCTGATTT------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------CAATAATTCA-G---GTTTAGCG----TCACC-TCAGTGATAAGGAGG TAGAAGGCAGAATCTTTTTTTTT--------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------TTTTTT---GTGGTTGTTAAA >Solenodon_paradoxus TAAGAAAATTTTCCAACCCTTGTGGAAATGACAAGATGTTATCTGATTT------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------AAATAACTCAGG---GTTTTTAG----TCACC-TTAGTAATAAGGAAG T-------GGAATTTTT--------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------ATTTTT---TTGGTTGTTAAA >Homo_sapiens GAAGAAAATTTCCCAATCCATGTGGAAGTGGCAACATGTCATCTGACGT------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------CAATAATTCA-G---GTTTAAGG----TCACC-TTAGTGTTAAGGAGG T-------GGAATCTCTC-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------TT-------TTGGTTGTTAGA Bat172_LINE >L1MA9_3END -------------------------------------------------------------------------------- --TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATAT ACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTACCA----------- ---------------------------TTTTTTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAAATTTCAA GTATAC----AATACAGTATTATTAAC---------TATAGTCACCATG---------------------CTGTA-CATT AGATCTCCAGAACTTATTCATCCTGCATAACTGAA-ACTTTGTACC---------------------------------- -------------------------------------------------------------------------------- ----- >Canis_familiaris TTGTTGCTATTAT------TATTTTTACCTTTC--AGTTT-ATGCTTTTGTGGCATAAT---CAATT----------TT- -------CCAGTTTTGTTAAGATATGATTAATATAC-AGAACTGCATATGTTTAAGATGTATAGCAT-ATAATTTGATTT ACATAT--ATCATGAAATTACTACCAC----AATTTAATTAAC--ATTCATTGTCTCCTGTAGTCACAAAA--------- ---------------ACATTA------TTTCCCT---TGTGATAAGAACTCTTAAGATTTATTCTTTT---AACTTTCAT TCATACCCAAAATATAGAACATGTCACAAATTTGTGTGTCATCCTTGTA-AGGGGTCATACTGA---TCTCTGTATCATT CCAATTTTAGTATATG----TGCTGCCAAAGTGAGCA------------CTACGTATGTATATA---------------- ---------------------------TGATGCTTATTTCAGTAGACCTTCCATC-------TTTGTCAGACAAAAAAT- TTCTT >Felis_catus TTGTTGCTATGATTTT---TTTTTTTACCTTTC--AGTTT-GTGCCTTTGTGGCATAAT---CAGTC---------TTT- -------CCAGTTTCACTGAGATATAATTGACATAC-AGCACTGCATTCATTTAAGAGACACAGCATAATGATTTGATTT ACATAT--ATCATGAAGTAATTACA------AGTTTACTTAAC--AT-AAGTATCTCATACAGTTACAAAA--------- ---------------AAAATA------TTTTTCT---TGTGATAAAAA--CTTAGGAT-TACTATCTT---AACTTTCAT TTATAGCAAAAATATGGAACAGTTCACAAATTTGTGTGTCATCCTTATG-GGGGGCCATGCTAATCTTCTCTGTATCATT TCAGTTCTATTATGTG----TGCAGCCAAAGTGGGCA------------ATCTATATCTATATC---TGTATCTATCTAT ATCAATATCTATATGCACACACACACATAATGCTTATTTCGGTAGACCTTCCATCTTCCATTTTTGTCAGACAAAGCAA- TTCTT >Manis_pentadactyla -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------TACTGCCTAAGTGACCT------------CATTCTATTTTTT------------------ ---------------------------TAATGCCCATT-CAATGGACCCTCCATC-------TTTGTCAGAAAAAGCAA- TTCTT >Sus_scrofa TTGTTGCTATTAT------TATTAT------------------------------TAAT---CAATT---------TTT- -------CCAG-----------TACAACTGACAAAC-ATTACTGTGTAAGTTTAACGTGCATAACACAATGGTTCAACTT AGGTAT--ATCATGAAATGATTACTAC---------ATTTCAC--AT-CATCATTTCATATAGATACATCATCTAATAAG ATACAAAAAAAAGAAAAAATA------TTTTCTT---TGTTATGAGA------AGGATCAATGCTCTTAACAACTTTCAT ATATACCAAAGATATGGAATGCTCCACAAATTTGCATGTGATCC-TGTGCAGAGGTCATGTTTATCCTCTCTCTATCACG GCAATTTTAACATACA----TGCTGCCAAAGCTAACA------------CGATCTATTTT-------------------- ---------------------------TAATACCTATTTCA-TAGACCTTCCATC-------TTTACCAGACAAAACAA- TTCTT >Bos_taurus TTGTTGCTATTCT------TATTATTATCTTTC--AATTTCATGCTTTAATGGCATAAT---CTATT-------TTTTT- -------CCAGTTTCATTGAGATGCACTGGATGTAC-AGCACTGTATAAGTTTAAGATGTATAGCATAATGATTTGACTT ACATAT--ATCATGATATGATTACTACA---AGTTTAA----------CATCGTCTTATACAGATCCATAATCTCATCA- TTACAAAAAAAGAAAAAAATA-------TTTTAT---TGTGATGAGA------AAGATCAATTCTCTTAACAACCTACAA ATATACCAAAAATATGGAATCCTTCACAAATGTACATGTCATCC-TGTA-CAGGGCCATGTTAATCTTCTCTGCATCATT CCAATTTTAGCATATG----TGCTGCCAAAGCTAGCA------------CAATCTATTTTT------------------- ---------------------------TAATGCCTATTTCAGTAGACCATCCATC-------TTTACCAGAC-AAGCAA- TTCTT >Equus_caballus TTGTTGCCATTGTTATTATTATTATGACCATTC--AATGTGATGCCTTTATGGCATAAT---GAATCTA----TTTTTT- -------CCAGTTTTATTGAGCTATAATTGACATAC-AACACCATATAAATTTAAAATATACAGCATAATGGTTTGACTT ACAAAT--ATTATGAAATGATTGCACCA---AGTTTAGTTAAC--ATCCATCATCTCAGATAGTTATAAAA-------AA AGAAAAAGAAAAAGAAAAATATACGTTTTTTTCT---TGTGATGAGAACTC--AAGATTTACTCGCTTAAGAGCTTTCAC ATATACCAAAAATATGTAACGCTTCATGAATTTACATGTCATCCTTGTG-AAGGGCCATACTAA---TCTCTGTATCATT CCAATT-TAGTAGATG----TGCTGCTGAAGTGAGCA------------CCAACTATTTTTTT----------------- ---------------------------TAATACTTATTTCGATAGACCTTTGGTC-------TTTGTCCGACAAAGAAA- TTCTT >Ceratotherium_simum TTGTTGTTGTTATTATTA-TATTATTACCATTC--AATTTGATGTTTGTATGGCATAAT---TAATCTA----TTTTTT- -------CCAGTTTTATTGAGATATAATTGACACAC-AGCACTATATAAATTTAAGGTGTACAGCATAATAATTCGACTT ACATAT--ATTGTGAAATGATTACTACA---AGTGTAGTTAAC--ATCCACCATCCCATATAGTTACAAAA--------- -CAAAAAGAAAAAGAAAAAAA------CTTTTCT---TGTGATGAGAACTCTTAGGATTTATTCTCTTAGCAACTTTCAC ATATACCAAAAATATGGAGCACTACATGAATTTGCATGTCATCCTTGTG-GGGGGACATAGTCA---TCTCTGGATCATT CTAATTTTAGTGTATG----TGCTGTT-AAGTGAGCA------------CAATCTATTTTTTC----------------- ---------------------------TAATGCCTATTTTGGTAGACCTGCGACC-------TTTGTCAGACAAAGCAA- TTCTT >Myotis_myotis TTGTTGCTAATATTAT---AATTATTACTGTTCAAAATTTGATGCTTTGA-GATATGAT---CAATCTA-----TTTTT- -------CCAATTTTATTGAGATATAATTGATATAT-AGCACTGTAT--GTTTAAGGTATACAGCATAATGATTTGACCT ACATTT--ATCATGAAACATTTACCACA--------AGTTAAT--ATCGGTCATCTCATGTCAACACAA----------- ------------------ATATATATTTTTTTCT---TAAGAAGAGAGCCCTTAGGACCTACTCTCTTGACAACTTTTAT ATATAACTGAAATATGGAATGCTTCACAAATTTGTGAGTCATCCTTGTGCAGGGGCCATGCCAGTCTTCTCTGTGTTGTT GCCATTTTAATACCCGTAGGTGCTGCTGAAGTGAGCA------------CAATCTGCTTTTC------------------ ---------------------------ACATGCCTGTTTTGATAGATCTTCCAT--------TTTGTCAAACAAAGCCA- TTTTT >Rousettus_aegyptiacus TTGTTGCTATTATTAT---CATTATTAGTGTTC--AATTTGATGCGTCTATGATGTAAC---CAACCTC----TTTTTT- -------CCAGTTATATTTAGAT--------------AAAACACTATCAGCTTAAGGTGTATA-CATAATGATGTGATTT ACATAT--ATCATGAAACTTTTACCACA---GGTATAATTAAC--ATCCATCATCTCATATAGAGACGAAA--------- -----AGAAAAAGAAAAAAAA------TTTTCCT---TGTGATTAGAACTCTTCGGAACTATCGTCTTGACAACTTTCAT AAACTCCCCAAATATGAAACACTCCACAAATGTGAGCATCATCCTTGTGCAGGGGCCGTGCTAATCTCTTCTGTATCATT CCAATTTTAGTGTATG----TGCTGTCAAAGCGAGCA------------CAGTCTATTCTTTTT---------------- ---------------------------AAATGCCTATTTCAGTAGAGCTTCCAT--------TTTGTCAGACAAAGCAG- TTCTT >Condylura_cristata TAGTTGCAAT---------CATTATCACCTTT---AAGTTGACATTTTTATAGCATAAT---CAATATATTTTTTTCTA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------AAGTGCCTATTAAAATAGATGTCT-----------ATTGTCAGACAAAGCTAC TTTTT >Solenodon_paradoxus TTGTTGCTATTAT------TACAT------TTC--AATTTGATGTTTTTATCATGTAAT---CAATCCA--TATTCCTA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------AAATGCCTATTTTTGTAGACTTCCCATC-------TTTGTCTGACAAAGCAA- TTCTC >Homo_sapiens GTATTACGATTTTGATCATGACTATTACCTTTC--AATTTGATGCTTTTATGGCATAAT---CAATCTA----TTGTTA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------AAGTGCCTATTTTGGTACACCTTCCATC-------TTTGTCTGAGAAAGCA-- TTCTT Bat174_LINE >L1MA9_3END -------------------------------------------------------------------------------- ----------------------------------------TTTTTCCAGCTTT--------ATTGAGGTATAATTGACAA ATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATATACGTATA----CATTGTGAAATGATTACCACAAT CAAGCTAATTAACATATCCATCACCTCA---------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------CATAGT TACCAT---TTTT-------TTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAAATTTCAAGTATACAA-TAC AGTATTATTAACTATAGTCACCATGCTGTACATTAGATCTC--CAGAACTTATTCATCCTGCATAACTGAAACTTTGTAC CCTTT--------------------------------------------------------------------------- ------- >Canis_familiaris CAAATCTTTCTAGGATAAATTCATCTTTATCTGCCACGGGTCTTGAGGAC---TACTTGTATTTTTT------------- ---TTTAAGCAAAAGAATTTACTAGTAT----------TATTTTTAAAGGTTTTT--AAAAATTGAGATATAATTGATAC AC-AACATTATATTAGTTTCAAGTGTACAACTTCATGATTTCATATTTATAGA----TATTACAAAATAATCACC--AAT AGGTCTAGTTAA--GATCCATCAGCATA---------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------TGCAGT TACACTTTGTTTTGTTTTGGTTTTTTGCAATGAGAACTTTTAAGATCTACTCTCTTGGCAATATTCAAGTATGCAA-TAC AGCAAGATTCACTATAGTCA-----------------TGCC--CAGGACTTATTTATTTT--AGAATTGGAA-------- --------TACTT---GTATCTTTT---GTCTCTTACTTCATATCTAAAATTA--------CTATCAAATC-AGGAGTAG CTCCTCT >Felis_catus GAAATCTTTCTAGGATAAATTCGTCTTTACCTTCCATGGGTCTTGAGGGC---TACCTGTATTTTTT-----------TT TCCTTAAAGCAAAAGTATTTATTACTAT----------TATTTTCAAAGATTTTT--TTTAATTGCGGTATTATTGATAT AT-AACACTATATTAGTTTCAGG--TTCAAATTCACGATTCCATATTTGTGTG----TATTGCAAAATGATCACCGCATT GGATCCAGTTAA--GATCCATCAGCACACAGGGGCGCCAGATGGCTCAGTCAGTGAAGCGACCAACTCTTGATTTCCGCT CAGGTCACGATCTCATGGTTCGTGGGTTGGAGCCCCATGTGGGACTCGGGGCTGACAGCATGGAGCCTGCTTGGCATTCT CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCTCTCTCCCTCTCTCCCCTCCCCT GCTTGTGCTCTGTCTCTCTCTCTCAAAATACATAGATAAACATAAACATGAAAATAAAAAGATACATCAGCATACGTGGT TACGC----TTTT-------TTCTTTTCGGCGAGAACTTTTCAGACCTACTCTC--AGCAATATGCAAATACGCAGTTAC CGCAAGATT----ATAGTCACCGTGCAGCCCTTCACGTCC---CAAGACTTATTT-------ATAGCTGGAT-------- --------TACTTCTTGCACCTTTT---GTCTCTTACTTCATATCTAGAATTA--------TTATCAAATC-AGGAGGGG CTTCTCT >Manis_pentadactyla GAAATATTCCCAAGATGAGT-GGTCTTTGCTTTCCATGGGTCTAGAGAGC---TGCCTGTACCTTTC------------- -TTTTAACATAAAAATATTTAT----------------TTATTTACTAGGTTTTTAAAAAAACAGAGTCATAATTGACAC AA-AACATTTTATTAGTTTCAGGTATACAACTTAATGATTCAATATCTGTATA----TTTTGCAAAATGATCACCAC--- AAGTCTGGTTAA--CATCCATCACTGTA---------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------CTTATT TACAACA--TTTT-------TTTCTTGTGATAAGACCTTTTAATACCTACTCTATTAGCAACTTTAAAATATGCAA-TAC AGTATCATTAACTATAGTCACCATGCTGTACATTATACCCCCTCAGGACATACTTATTTT--ATAACAAATA-------- --------TACCT---GTATTTTTT---GTCTCTTTCTTCATATCTGGTATTA--------TAATCAAATC-AGGAGTAG CACCTCT >Sus_scrofa GAAATCTTTCTGGGATAAATTTATCTTTATCTTTCATAGGTCTTGGGGGC---TACCTGAATCTTTG------------- AAAAACCCACAAAAATATCTATTTCTGTATTTATT---ATTTTTAAAAGATTCAT--AAAAATTCAAGTATAGTTGACAT ---AACAGTATGTTAGTTTCAGGTATACGACTT---GATTCAACATTTGTACA----TATTGCAAAATAATCAC---AGT AAGTCTAGGTAA--CATCCGTCACCATC---------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------TATAGG GACACATATTTTT-------TTTTCTGTGTTCAAAG-TTTTAAGATCTATTCTTTCAGCAACTTTTGAATATGCAA-TAT GGTGTTATTAACGAGAG-CATCATGC-ATATATTACATTCT--CAGGACTTT----------ATCACTGGAA-------- --------TACCT---GTACCTTTT---GT--CTCATTTTATAGCTAGGATTA--------TAATCAAATC-AAGGGATT CTCCTCT >Bos_taurus GAAATCTGTCTAGGATAAATTTGTCTTTATCTTCCATAGATCTTGGGGGC---TATCTGTATTTTTT------------- ----TAATCTAAAAATATTTATATATTTATAA------TTTCTAAAAAGATTTTT---TAAATGTGGGTATAACTGACAT AT-AACAGTATATTAATTTCATGTATACAACTTAATGCTTCAGTGTGTGTATATTTTTACTACTAAATGATCACCACAAT AAGACTAGG-----CACTTGTCACCATACAGG------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------CATAGT TAAAA----TCTT-------TTTTTTGAGTTAAGAGCTTTTAAGGTCTCCTCCCTTAGCAACTTTCAAATACGCGA-TAC AGTCTTATTAACTACAGTCACCATGATATATATTATATTCC--CAGGACTTAATTATTTT--GTAACCTAAA-------- --------TGCCT---GTACTTTTT---GCCTCTTACTTTGTATCTATAATAA--------TAATCAAATG-AGGAGTAG TTCCACT >Equus_caballus GAAATCTTTTAGAGATAAATTTGTCTTTATCTTCCATGAGTCTTGAAGGT---TACCTGTATCTTTT-----------TT GTTTTTACACAAAAATATTTA--------------------TTTTTTAGATTTTT--TATGATTGCGGTATAATTGACGT AT-AACATTATATTAGTTTCAGAGGTACAATTTAATGATTCAATATTTGTATA----CATTGCAAAATGATCACCATAAT AAGTCTAGTTAA--CATGCATCTCCATA---------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------CACAGT TACAAAACTTCTT-------TTTCTTGTGATGAGAACTTTTGAGATCTATCCTCTTAGCAACTTTCAAATATTCAA-TTC AGTATCATTAACCATAGTCACCATGCTCGACATT---------------------------------------------- ---------ACCT---GTACCTTTT---GT--CTTACTTCATTTCTAGTGTTA--------CAGTCAAATC-AGAAGTAG CTCCTCT >Tapirus_indicus GAAATCTTTTTGAGATAAATTTGTCTTTATCTTCCGTGGGTCTTGAAGGT---TACCTGTATCTTTT---TTTTGTTTGT TTTTTTACACAAAAGTATTTA--------------------TTTTTTAG-TTTTT--AAAAATTGAGATATAATTGACGT AT-AACATTATATTAGTTTCAGGTGTACAATTTAAGGATTCAATGTTTGTATA----TATTGCAAAAGGATCATCACGGT AAGTCTAGTTAA--CATCCATCACTATA---------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------CACAGT TACAAAA--TTTT-------TTTCTTGTGATGAGAACTTTTAAGATCTACTCTCTTAGCAACTTTCAAATATGCAA-TAG AGTATTATTAACTGTAGTCACCACGTTGTACATTATATCCC--CAGGACTCATTTATTTT--ATAATTGGAA-------- --------TACCT---GTACCTTTT---GT--CTTACTCCATGTCTAGTATTA--------TAATCAAATC-AGGAGTAG CTCCTCT >Myotis_myotis GAAATCTTTCTAGGATGTATTGGCCTTTCTCATCCATGGGTCTTGAGATC---TATATGCACCCTTT------------- -CTTTAACATGAAAATACTTACTTACTTATTTATATTATTATTTTTTAGATTTTA-AAAAAATGAAGCTATAATTGTCAT AT-AACA--GTATTAATTTCAGGTGTACAACTTAATGATTTGATATTTGCATA----TATTGCAAAATGATCACCACAAT AAGTCTAGTTAACCCATTTGTTACCACA---------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------CGAAGG TACAAAA--TGTT-------TTTCTTGTGATGAGAACTTTTAAGATCTACTTTCTTAGCAACTTTCAAATAT-------- AGTATTATTAACTATAATCACCAAATTGTACATTAAATCCC--CGGGGCTTATCTATTTT--ATAACTAGAA-------- --------T-CCT---GTACCCTTT---ATCTCTTACTTCATATCTGGTATTA--------TAATCAAATC-AGGAGTAG CTTCTCT >Rousettus_aegyptiacus GAAATCTTTCTAGGATATATTTTCCTTTCCCTTTCACAGTTCTTGAGGGC---TATCTGCACTTTTA----------AAA AAAAAAACACAAAAATATTGATTTATTTTTT-------TTATTTTTTAGCTTTTT--AAAAATTGAGTTGTAATTGA--- ---AATATAATATCAGCTTCAGGTGTACAACTGAATCATTTGATATTTGTATG----TATTA-AAAATGATTACCACAGT AAATTTAGTTAT--CATCTGTTACTGTA---------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------CATAGT TACACAATTTATT-------TTTCTTGTGATGAGAACTTTTAAGATCTACTCTCTTAGTAACTTTTAAATATTCAA-TAC AATATTGTTAACTATAGTTAACGTACTGTGCATTACATCCC--CAGGAACTATTTATTTT--ACAACTGGGATA------ --------TACCT---GTACATTTT---GTCTCTTACTTCATGTCT---CTCA--------TAATCAAATC-AGGAGCAA CTCCTCT >Condylura_cristata GACATCTTTCTAGGATAAATTTGTCCTTAT------AGCATCTTGAGGGT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------TACTT---GTACCTTTT---ATCTATTATTTAATGTCTAGCATTAGGTTGTAATATATAATTC-AGTTGTGG TGCCTCT >Sorex_araneus GAAATCTTTTCAGGGCAAATACGTCTTTATCATTTACTCATCTTGAAGTC------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------TCTCT---------TTT---GTCACTTACTTCGCATCTAATATTA------------GAAAACTAGGAACAA CACTACC >Homo_sapiens GAAATCTTTGTAGGATAGAATTGTC--TATCTTCCATGGGTCTGGAGGGC------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------TACCT---------TTT---GT---GTATTTAATATTTAGTATTA--------TAATCATATC-GTAAGTGT TT---TT Bat180_LINE >L1MA9_3END -------------------------------------------------------------------------GTAATCA TTTCACA-------------------------------------------ATGTATACGTATATCAAAACATCACGTTGT ACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAA-----GCTGGAAAAA----------------- -------------------------------------------------------------------------------- ------------ >Canis_familiaris TACTAA-GCCTCAGCTCTCCGCAA-ACCAGATCTGATGACAAACTGCCAAGTTC---AACAAAATGAAAT---------- --TTGCA-------------------------------------------ATATATACATATATCAAATCATTATGTTGT ATACATTGGTCTCATA----TGTAATATATCAATTTTAGCTCAAGAAACT---GGGGGAGA-----------AATCATCT GGCAT---C--T-GTACCTACATGT---------------------------------TACAAAAGATTATTTGCATACA GTTCCAAGGGTA >Felis_catus TGCTAACGTCTCAGCTCTCTACAA-ACCATTTCTGATGACAAGCTGTCAAGTTC---AACAATATGAAAT---------- --TTGCA-------------------------------------------ATACATGCATATATCAAATCATCATGTTGC ACACATTGGACTGATATGT-TCTTATA--TCAACTATCT--------------GGGGAAAA-----------AGCAATCT GGCAT---CTGT-ACTCCCACAT-----------------------------------TAGGAAGGATCGTTTGCCTGTA GTTTCAAGGTCA >Manis_pentadactyla CGCTAA-GCCTCACCTCTGTGCAA-ACCAGATCTGATGACAAATTGTCAAGTTC---AGCAACATGGCTT---------- --TTACA-------------------------------------------ATATAGACAGACATCAAACCAT---GTGGT CCACCTTGGACCA-------CGTTACATGTCAAGTATATCTCAATAAACCCGAGCAAAAAA-----------CCAACATT GACAT---CCCT-GTTCTCACACATACTGTAAAACATTTACAAAAAGAAACATAGAACAAAAAAGGATTGTCTGCCTGCA GTTTGAGGGGCA >Sus_scrofa TGCTAA-GCCTCAGTCCTCCACAATGTGAGATTTCATGACAAGTTGTCAAGTTC---AACAATATGGTAT---------- --TTGCA-------------------------------------------------ATATATATCAAATCAT--TGTTGT ACACCCTGGACTAATACAA-AATTATATGTCAGTTATATCTCAATAAAACTAAGGGGGAAAAA---------AACAGTAT GACAT---CCAT-GTTACCACACTT---------------------------------TAAGAAAGACTGTTTGCCTTCA GTTTCAAGGGCA >Tursiops_truncatus TGCTAA-GCCTCAGCTCTCCACAA-ATGAGATACGATGACAAATTGTCAAGCTC---AACAATGTGGCAT---------- --TTGCA-------------------------------------------------GTATATATCAAATCATTATGCTGT ACACGTCAGACTAATATAA-TGTTATGTGTCAATTATATCTCAATAAAGCTGGGGGGGAAA-----------AACAGTGT GACAT---CCAT-GTTCCCAAACAT---------------------------------TAAGAAAGGTTGTTTGTCTGCA GTTTCAAGGGCA >Equus_caballus TGCTAA-GCCTCAACTCTCCACAA-ACCAGATCTGATGACAAACTGTCAAATTC---AACAACATGACAT---------- --TTGCA-------------------------------------------ATATATACATATATCAAATCATTATGTTGT ATACCGTGGACTAATATAA-TGTTATGTGTCAATTCTACCTCAATAAACT---GGAAAAAAAA---------ACCAATAT GACAT---ACTT-CTTCTCACACAT---------------------------------TCAGAAAGATTATTTGCCTGCA GTTTCAAGTGCA >Ceratotherium_simum TGCTAA-GCCTCAGCTCTCTATAA-ACCAGATCTGATGACAAATTGTCAAGTTC---AACAATATGATAT---------- --TTGCATATCATATATATACATATATCAAATATATGTATATATACATATATATATACATATATCAAATCATTATGTTGT ACATCTTGGGCTAACACAA-TGTTATATGTCAATTATATCTCAATGACCT---GGGAAA-------------AAATATAT GACAT---CCAT-GTTCTCATACAT---------------------------------TAAGAAAGATTATTTGCCTGCA ATTTC-GGGGCA >Myotis_myotis TGCTAA-GCCTCAGCTCTCCACAA-ACCAAACCTAATAATAAATTGTCAAGTTG---AACAAAATGACCG---------- --TTGCA-------------------------------------------ATATGCACATATATCTTATCATTATGTTGT ACAACTTTGAC-GAGATAA-TCTTATCTGTCAATTACATCTCAATAAACT---GGAGAAAA-----------AGCAATAA AACAT---CCAT-GTTCCCACACAT---------------------------------CAAGAGAGATTGTTTGCCTGCA GTTTCAAGGGCA >Rousettus_aegyptiacus TATTAA-GCCTTAGCCCTCCACCA-ACCAGATCTGATGAAAAATTTTCAAGTTC---AACAATTTGACAT---------- --TTGCA-------------------------------------------ATACCTATGTGTATCATATCATTATGTCAT GCACTTTTAACTAATATAA-TGCTATATGTCAATTATATCTCAACAAACTGAAGAAAAAAAAAAAAAAA---GCCAATAC AACAT---TCAT-GCTCCCACACAT---------------------------------GAAGAGAGGGTGCTTGTCTGTG ATTTCAAAGGCA >Condylura_cristata TA-TAT-GCCTCAGCACTCCAGAG-ACTAGCT---ATGACAAACTGTCTAGTGC-------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------AATGACAA GACAT---CTACAATTCTTATACAT---------------------------------TTAGAAAGATCA----CCCACA GTTTCAAGGACA >Uropsilus_gracilis TGCTAA-GCCTAAGCACTCCAGAG-ACCAGACATGAC----AACTGTCTAGTGC-------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------AATGA--- --CAT---CTT--GCTTTTACATAT---------------------------------TTAGAAAGATTG----TCCACA ATTCCAAGGGCA >Cavia_porcellus TCCAGA----TCTGTCACCCACAA-GTCAGATCTGATGAGAAA--GTCAATATT-------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------AACAATCC TACAT---CCAT-ATTTTTACATAT---------------------------------TAAGAAAGACTATTTGCTTTTA ATGCCAAGAGCA Bat189_LINE >L1MA9_3END -------------------------------------------------------------------------------- ------------------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATA-TATTTAAGGTGTACA ACGTGATGTTTTGATATA-----------------CGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATA TCCATCACCTCACATAGTTACCA-----TTTTTTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAAATTTCA AG------------------------------------------------------------------------- >Canis_familiaris TCTTTAGAATTTATCT-----TCTATTATTCTAAATTT---GAAGATATATATAT----------------TGAA---TT CCAATACTATT-TTT----------------ATTGATGTATAATTGAC-TAT-AAGATTATATTGACTTTTAGATATACA ACAT---GATATAGTATTTGTACTGAGAAATATATTGTATGTATTGAGAAATGAT-ATCACTATAAG--TAGTT--GACA TCCATCCCCATACACAGTTACAAAGATTTTTTTTTTCTTGTGACAAGGACTTCTGAGATCTACTCTCT------------ -----TACCAGTACTAC-TTT---AATATATTA-TAGGGTTTAAGGAATAAACCAAAGAAAACAGCGCATGTGAA >Felis_catus TCTTTAGAATTTGATTATTT-TCTG---TTCTGGATTT---AAAAATATGTAAAT----------------TGAA---TT CTAC--------TTT-------------TTTATTGAGGTATAATTGACATAT-AAGATTATATT-ACTTCTAAGTGTACA ACAT---GATTCAATATTTTTATATATTGAGAAA-TATATGTATTGAGAAATGAT-ACCACAATAAG--TAGTT--AACA TCCATCCCCATACATATTTCCAAATA--TTTTTTTTCTTATGATGAGAACTTT-AAGATCTACTACCT------------ -----TACCAATCCTACTTTT---AATATATTA-TAGGGTTTAAGGAATAAACCAAAGAAAACCGCGCATGTGAA >Manis_pentadactyla TCTTTAGAATTTTATTATTT-GCTG---TTTGGGGCTTTA-AAATATATATATATATGTATATA-------TATA---TT CCAATACTATT-TTT-------------TAAATTGAGATGTAATTGACATAT-AACATTATATT-AGTTTCAGGTGTACA ACAT---GATTCGATATT-----------------TGTATACATTACAAAATGATCACCACAAT--GTCTGGTT--AATA TCCATCCCCATACATAGTTACAA----TTTTTTTTTCTTGTGAAAAGGACTTTTAAGGTCTACTCTCT------------ -----TACCAATAC-ACTTTA---AATATATTA-TAGGGTTTAAAGAATAAACCAAAGAAAACAGCGCATGTAAA >Sus_scrofa TCCT-----TTTTGTTCTTT-TCTGCTGTTCTAGATTTTTAAAATATATACATATAT--------------TGAA---TT CCAGTACTCCT-TTA--------------TTGTTGAGTTATAATTGACATAT-AACATTGTATT-AGTTTCAGGTGTG-A ACATAATGTTTTGATATT-----------------TGTATGTATTGAGAAATGATCACCACAGTAAGTCTAGTTTAAACA TTCATCCCCATACATAGTTATAAGAAATATTTTTTTCTTGTAATGAGGACTTTAAAGATATAATCTCT------------ -----TAACAATATCGCTT---------TATTA-TAGGGGTTAAGGAATAAACCAAAGAAAACAGCACATGTGAA >Bos_taurus TCTGTAGGCATTGA--------------TTTTGGGTATTAAAAATGTACATGTGT----------------TGAA---TT TCAATACTACT-TTT--------------TTGCTGAGTTAAAATCGACATAT-AAC---ATATT-AGTTTCAGGTGTAAA ACATAGTAATTCGATATT-----------------TTTATATATTGAGAAATGATCCCATACTTAAGTCTAGTTTAAATA ATTATCCCCATACATACTTACATA----TTTTTTTTCTTGTGATAAGAACTTTAAAGATCTACTCTCT------------ -----TATCAATACTACTTTT---AATATGTTA-TAGGGGTTAAGGAATAAACCAAAGAAAACAGCCCATGTGAA >Equus_caballus TCTTTAGAAGTTGATTCTTC-TCTGCTATTCTGGATTA---AAATATATACATAG----------------AGAA---TT TCAATACTTCTCTTT-------------TTTATTGAGATACAATTGAC-----------ATGTT-AGTTTCAGATATACA ACATTATGATTCAGTATT-----------------TGTGTACATTGAGAAATGATCACCGCTCTAAGTCCAGTT--AGCG TCTGTCCCCATACATTGTTACAAA---TGTTTTTTTCTCGCGATGAGGACTTTTAAGATCTGGTCTCT------------ -----TATCAGTACTACTTTT---AATATATTATTAGGGTTTACGGAACAAACCGAAGAAAACAGCACATGTGAA >Ceratotherium_simum TGTTTTGAAGTTGATTCTTT-TCTGATATTCTGGATTT---AAATATATATATATAGAGAGAGAGAGAGAGAGAA---TT CCAATACTTCT-TTT-------------TTTATTGAGATATAATTGACATAT-AACATTATATT-AGTTTCAGTTGTACA ACATAATGGTTCAATGTT-----------------TCTGTATATTAAGAAATGATCACCACTATAAGTCTAGTT--AACA TCTGTCCCCATACATCATTACAAA---TTTTTTTTTCTTGTGATGAGGACTTTTAAAATCTACTCTCT------------ -----TACCAATACTACTATT---AATATATTA-TAGGGTTTACGGAACAAACCAAAGAAAACAGCACACGTGAA >Myotis_myotis TCATGGAAAGATGAATTTTT-TCTGCTCTTCTGGATTT---AAATACACATAT------------------AGAA---TT CTAATACTATT-TTT----------------ATTAGAACATAA-TGAC--AT-AATGTTATTTT-AGTTTTAGGTGTACA ACATAGTGATTTGAT--------------------------------GAAATGATCACCACAATAAGTCTAGTT--AACA TTTGTCCCCATACATAGTTACAAA----ACTTTTTTCTTGTGATGAGGACTTTTAGGATCTACAGTCT------------ -----CACCAATACTACTTTT---AATATATTA-TAGGGACTAAGGAATAAACCAAAGAAAACAGCGCATGTGAA >Rousettus_aegyptiacus NNNNNNNNNNNTACATATATAAATATGTATATGTATGT---ACATATACACACACATACATACACACACATAAAA---TT CCAATACTACT-TTT--------------TTATTAAGGTTTAATAGAC--------ATTATATT-AGTTTAATGTGTACA ACATAACATTTTGATATT-----------------TGAATATATTGAGAAATGATCACCACAATGAGTCTAGTT--AACA TTTGTCTCCATACATAGTTATAAAAAATGTTTTTTTCTTGCTATGAGGACTTTCAAGATCTACTCTTT------------ -----TACCAATACTACTTTT---AATATATTA-TAGGGTTTAAGGAATAAACCAAAGAAAACAGCGCATGTGAA >Condylura_cristata CTTTCAGAAGTTGATTTTTTCCCTGCTATCTTGGATTTTA-AAATATATATGTAC----------------TGAA----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----TTCCAGTATTACATTT---AATGTATTA-CAGGGGTTAAGGAATAAACCAAAGAAAACAGCACATGTGAA >Erinaceus_europaeus TCTCCAGAAGCTGATTTAAT-G-TGCTATTACTGATTAGCTAAATAT------------------------TGAA----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----TTTCAACACTATTTTT---CATATATTG-TAGGGGTTAAGGAATAAACCAAAGAAAACAGCTTATGTGAA >Homo_sapiens GCTTTAGAAATTGATTTTCT-CCTG---TTCTAGATTT---AAGTATATAT--------------------ACAA----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----TTCCAATGCTTCTTTT---GATATATTA-TAGGGGCTAAGGAATAAACCAAAGAAAACAGCACATGTGAA Bat216_LINE >L1MA9_3END -------------------------------------------------------------------------------- ---------------------------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAA G--GTGTACAACGTGATGTTTTGAT-ATACGTATAC-ATTGTGAAATGATTACCACAATCAA-GCTAATTAA--CATATC CATCACCTCACATAGTTACCATTTTTTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTT-AGCAAATTTCAAGTATA -CAATACAGTATTATTAACTATAGTCACCATGCTGTACA-TTAGATCTCCAGAACT-TATTCATCCTGCATAACTGAAAC TTTGTACCCTTTGACCAACATCTCCCCATTT------------------------------------------------- ----------------------------------------------------?? >Canis_familiaris AAAACAA--AATGAGTAATACCTCCACAAAGCACATTCACGCCACCAAAATACTTTCACTGAGAGAAACATCATTACAGA AATAGAAA---------TTTG--------TGTCCTTTTTTATTGAAATATATTTCACGTAC-ACCATGATGTAAATTTAA G--GTGGAAAACATGTTGATTCGAT-ACATCTGTAT-A---------AATTGTCAT-GTAGT-GATAG------AATTTC TA--ACATCACATAATTATCATGTCTTT-TCTGTGGTTGGAATAATTAAGATCTAGACTCTT-AGCAAGTTCGACCATTA -TAATATAACATTGTTGTCTATATTCAGAATATGGTGCT-GAAGATCTCTAGGACCTTAGGTATCT--ACTAACTGCAAG TTCACACCCTC-GAACAACAT-------------CC--AGGACACAGATTCTCCTC--------CGCACTCTACCTTTCT CA--T-------TCTGTCTCTCAAGCAGACACATTCTCCAATGTTTTTATTCCA >Felis_catus AAAACAA--AAAGAGTAATACCTCCACAAGGGAAATGCATTCCAGCAACATAATTTCACCAAAAGAAACTTCGTTGCAGA AATAAAAG------TTTGCTG--------TGTGTGTTTTTATTGAAATGTATTTCACATAT-AACATGATGTATATTTAA G--GTGTAAAACATGTTGATTTGATAACATTTATAT-ACTACAATGTGAT-------------GATAG------AACCTC TATCACATCACATAATTACCATTTCTCT-TTAGTGGTTGAAA-AATTAAGATCCAGATTCTT-AGGAAGCTTGATGATTA -TAATACAATACTGTTGTCTATATTCGCTATATTGTGCA-TAAGATCTCCAGGATC-TATATATCA--ACTAGTCGCAAG TTTACGCGCTT-GAACAGCAT-------------CC--AGAACACAGATACCCTT------------------------C TG--TTCTCTCTTCTGTCTTCCAAGAAGACACATTCTCCAATGCTTTTATTCCA >Manis_pentadactyla AAAACAA--AATGAGTAATAACTCCATAAAAGAAATACATTCCAGCAACATACTTT-ACCAAAAGAGACTTCACTGCAGA AATAGGAATAGAGATTCATTG--------TGT---TTTTTATTGAAATATATTGGACATAT-AACATGATATACATTTAA GATGTATACAACATGTTGATTTGAT-ACATTTTTAT-ATTATAATATGATTGCCATTGTAGT-GATGGTTGG--CACCTC TACTGAGTCACATAATTATCGTTTCTTT-TTTGTGGTGGTAATAATTCAGATCTAGACACTT-AACAAGTT----GATCA -GAACACAATATTGCTATCTCTTTTCGCTCTG-TGTGCA-TTACACTTCCAGGACC-TGTATGTCT--ACCAGTTACAAG TTTGCACCCTT-ACACAACAT-------------CC--AGGACAGAGATCCCCTTC--------TGCAGTTTGCCTTTCT CT--CTCTCTCTTCTGGATTTCAAGGGGACACATTCTCCAACATTTTCACCCCA >Equus_caballus AAAACAA--AACGAGTAATATCTCTACAAAGGAA--ACATTCCAGCAACATACTTTCACCAATAGAAACTTCATTGCAGA AACAGAAATAGAGATTTGTTT---CATTTTGT---TTTTTATTGAAATATATTTGACATAT------TGTGTAA---TAA G--GTATAAGACATGTTGATTTGAT-ACATTTATAT-ACTGTAATATGGTTGTCATTGTTGC-GATAG------CACCTC TATCATGTC--ATAATTCTCATTTCTTT-TTTGTACTTGGAATAATTAAGATCCAGACTCTT-AGCAAGTTTGATGATTA -TAATACAATATTGTTGCCTGTATTCACTACACTGTGCA-TTGTATTTCCAGGAGC-TATTTGTCT--ACTAGTTGCAAG TTTGTAC-CTT-AAACAACAT-------------AC--AGGATACAGAGTCCCTTC--------TCCAGTTTGCCTTTCT CG--TTCTCTCTTCTGTCCCTCAAGCAGATACATTCTCCAAGGTTTTTGTTCCA >Ceratotherium_simum AAACCCA--AATGAGTAATATCTCTACAAAGGCA--ACATTCCAGCAGCATACTTGCACCAAAAGAAACTTCGTTTCAGA AATAGAAACAGAGATTTGTTT--------TGT---TTTTCATTGAAATATATTTGACATGT----ATGATGTAAACTTAA G--GTGTAAAACATATTGATTTGAT-ACATTTATAT-GTTGTAATATGACTGCCATTGTAGT-GATAGTTAG--CATCTC TATCATGTCACATGACTATCATTTCTTT-TTTGTGGTTGGAATAATTAAGATCTAGACTCTT-AGCAAGTTTGATGATTA -TAATACAATAG----GTCTATATTCACTATACTGTGCA-TTGCATCTCCAGGAAC-TATTTGTCT--ACTAGTTGCAAG TTTGTAC-CTT-AAACAACAT-------------CTTTAAGA---AGATTCCCTTC--------TCCAGTTTGCCTTTCT CA--TTCTCTCTTCTGTCTTTCAGGCAGATACATTCTCCAGTGTTTTTGTTCCA >Myotis_myotis AAACCAA--AACAAATAATAGCTCTACAAAGGGAGTACCTCCCAGCAGCATCCTTTCACCAAAAGAAACTTCACTGCAGA AATAGAAATA-----TTGTCT---------GT---GTTTCATTTAA------------TGT-AACGTTGTGTAA-TTTAA C--AAGAAAAACATGTTGATTTGAT-ATGTTTATGT-ATTGTAATAAAATCGCTGTTGGAGC-TATAGTTGG--CACCCC TA-----TCACACAATTATCAGTTCTT--TTTGGGGTTGGACTACTTAAGATCTAGACTCTC-TGTGAGTTT---GACTA -CAGTGCAATATTTTTGTCTATGTTCACTAGACTGTGCA-CTAGCTCTCCAGGACC-TGTTTGTCT--CCTAGTTGTGAG TCTGTACACT---AAC--CAT-------------CC--AGGACACAGAGTCCCTT-----------------------CT CATTTTCCCTCCTTTTTTTTTTTGACAGACACATTCTCCAACATTTTTGTTCTG >Rousettus_aegyptiacus AAACCAA--AGCAAGCAATATCTCTACAAAGAGAACACATTCCAGTAACATACTTTCAACAAAAGAAATTTCATCGCAGA AACAGAAGTAGACGATTGTTC--------TGT---TTTCTA-TTAAATATATTTGACATAT-AACATTATGTAA-TTTAA G--GCATAAAACATGTTGATTTGAT-GCATTTATAT-GATATAAGAAGATTGCTGTAGCAGT-TGTAGTTAGCACACCTC TAGCATGACACAAAATTAATATTTTTTTGTGTGTGGTTGGAATAATTAAGATCCAGAGTCTT-AGTAAGTTTGATGACTA -CAATACAGTACCGTTGTCTATATTCACAATACTATGCA-TTAGATCTCTAGGACC-TATTTGTCT--ACTAGTTGCAGG TCTGTACCCT--AAACAACAT-------------TC--AGAACATGGATTCCCTTCTGAGTCCATGTGGTTTGCTTTTCT CACTTTTTCTCTTTCGTTTTTCAGACAGATACATTC-CTAACA-TTTTGTTCCA >Condylura_cristata TAGCCAA--CAGAAG----GTCTTTACAGAGGGAGTACATTTCAGTAACAC----TCACCAAAAGGAACTTCAGTGCA-- ----------------------------TTGT----TTTTATTG--GTTTTTTGGCCTCAT-AACACTATGTGCATTTAA ---GTGTAAAACATGGAGATTTGAT-ACACTTACAG-ATCACAATGTGATTAGCACTGA---------------CACACC TGTCATGCC-----ATTATCATTTCTTT-TTTGCTCTTGGAATAATTAAGATCTAGACTCTTGAGAAAGCTGGATGATTA -TCATTTGACAGTGTTGCCCATGTTCGCTCTACTATTCATTTAGGTTTCTAGGGCC-TACTTGTCC--ACTAAGTACAAG TTTGTACCCTT-AAACAATAT-------------CT--GGGAGACAGATTTCCTTCC-------TGCAGTTTGCCTTTCT CA------TTCTTCTGTCTCTCTAACCAATACATTCTCCAATGATTTTTTT-CA >Uropsilus_gracilis GAACCAAGCAAGGAC----ATCTCCACAGAGGGATCACATT-CAGCATCATACTTTCACCAAAAGGACCTTCCTTGTG-- ----------------------------TTGCTC--CTTTA--AAAATATATTTGTCCTCT-AACAATATGTAA--CTAA ---GTGTGAAACACGTAGATTTGAC-ACATTTAGATGATCACATTGTGATTGTCGTTGTAACAAATAGCTAG--CACTTG TAGCACATCGTGCCATTTTCATTTCTTT-TCTGCTCTTGGAA----TAAGATCTAGATTCTT-AGCAAGTTGGAAAAGTA TTAACATGTCAGTTTGGTCCATAGTCACTCTATGGTGCATTTAGATTTCTAGGACC-AATTTGTCC--ACTAGGTACAAG TATGGATCCTT--AACAATAT-------------CC--GGGAAACAGATTTCCTTCT-------TGCTGCTCGCCTTGCT CA------TCCTTCCATCTTTCAAGCAAGCACATTCTCCAG-GTTTCTGTTCCA >Sus_scrofa AAACCAA--AATAAGTCATATCACTACAAGGGGG-TACCTTCCAGAAATATACTTGCACCAAAAGAAACTTCTTTTCAGA AACAGAAATAGGGA--TGTTC----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------CC--AGGACTCAGGATGCCCT----------------------TCT CA--CTTTCTCTTC----TTTCAGGCAGACACACCCTCCCACATTTTTATTTCA >Bos_taurus AAACCAA--AATAAGGGATATCATGACAAGGGAGATAGATTCCTGAAACACAGTTTCACCAAAAAAAACTCTACTGCAGG AATGGAAATAGCGT--TGTTC----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------CC--AGAACGTGGATTCCCTTC--------TCCAGTTTACCTTTCT TG--CTTTCTCTTTTGTCTTTCAGGCAGACACATTCTCCAACATTTTTGTTTCA >Homo_sapiens AAACCAA--AATGAGTAATATCTCTGCAAAGAGTATACATTCCAGCACCACACTTTCACCAAAAGAAACTTTATTGCAGA AATAGGTCTAAAGA--TGTTT----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------CC--AGGACACAGATTCCCTTC--------TCTACACTGCCTTTCT CA--TTCTGTCTTCTGTCTTTGAAGGAGACATATTCTCCAAC-CTTTTGTTCCA Bat219_LINE >L1MA9_3END ----------------------------------------------------------------------------TAGA TCTTAAGTGTTCTCACCACACACAAAAAAATGGTAACTAT--GTGAGGTGATGGATATGTT------------------- ------------------------AATTAGC-TTGATT------------------------------------------ -------------------------------------------------------------------------------- ------------------------------GTGGTAATCATT---------TCACAATG-----TATACGTATATCAAAA CATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATA----AAGCTGG-----AAAAA-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------- >Canis_familiaris ACATTTTTTTCAGGATCTTCAATATATC--TTTTGATAGCAAAATT-ACAA--GTT---AAAAACTATTT---------- ----AAGAGATCTTATCACAGGAAAAAAAATTATAACTAT--GTATGGTGATAGATGT---------------------- ------------------------AACTAGA-CCTATT------------------------------------------ -------------------------------------------------------------------------------- ------------------------------ATGGTAATCATTT--------TTGCAATA-----TATACAAATACCAAAT CATTGTGTTGTAAACCTGAAACTAATGTAA-TGTTATAAGTCAATTATGCCTCAA------ATTCTTT-----AAAAAAT A------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -TTTCCC---TGCATCTTACATTATTGATAGTGTATACAT----TTTTTGCTTATTGCTCCAAT >Felis_catus ACA-TTTTTTCTGTATCTTCAATATATC--TTTCAGCAGCAAAATT-ACAA--GTT---AAATGTGAGTTCTT------- ----AAAAGATCTCATCACAAG-AAAAAAATTATAACTAT--GCATGGTGACAGATGCT--------------------- ------------------------AACTAGA-CCTATT------------------------------------------ -------------------------------------------------------------------------------- ------------------------------GTGGCAATTACTTTGCATGTATTGCA--A-----TATGCAAACATCAGAT CATTATGTCATACACCTGAAGCTAATATAA-TGTTATATTTCAATTATACCTCAATATTTTACTTTTTTT---AAATTTT CTTAATGTTCACTTATTTTTGAGAGAGAGACAGACAGACAGACTGCGAGTGAGGAGGAGCAGACAGAGAGAGGGAGACAC AGAGTCCGAAGCAGGATCCAGCTCTGAACTGTCAGCACAGAGCCCATTGCGGGACTTAAATTCACTAACCACAAGATCAT AACCTGAGCTGAAGTTGGACACCTAACCGACTGAGCCACTCAAGGTGCCCCATTTATAGCTCAATTTCTTTTAAAAAATG ATTTCCT---TGAATCTTATATTATTAGTAGTATTTAAAA----TTTTTGCTTGTTCCTCCAAT >Manis_pentadactyla ACA-TTCTTTAATTATCTTCA-TATATC--TTTCAATAGTAAAACT-GAAA--ATT---AAACATGATTTCTT------- ----CAAAGTTTTCATCAGAAGAAAAAAATTTGTAACTGC-GTTATGCTGGTGAATTTT--------------------- ------------------------AACTAGG-CTTATT------------------------------------------ -------------------------------------------------------------------------------- ------------------------------GTAATGATCATT---------TTGCAATA-----TACACAAAT------- -ATTATGTTGTACACCTGAAACTAATATAA-TGTTCTCTGTCAAGTGTACTT---------ATTTTTTT----AAATTGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -TTTCTC---TGCATTTTATATTATCAATAGTATTTTGAT----TTTTTGCTTGGTACCCCAAT >Sus_scrofa ACA-TTCTTTCCTTGTCCTCCTGTCCTCAGTTTCAACAG-AAACTT-TCAA--GTT---GA---TGATGTCTT------- ----CAAATTTCTCATCGCAAGAAAAAAAAAT-TAACTGT--GTATGGTGATG----CT--------------------- ------------------------ACCTAGATTTTATG------------------------------------------ -------------------------------------------------------------------------------- ------------------------------GTGATAATCATT---------TTTC--TA-----TGCATAAATATTGAAT CATTATGTTATTAACCTGAAACTAACATAA-TGTTTTATGTCAATTGTACATCAATA----------------AAA---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---TCTC---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Bos_taurus ACA-TTCTT-CATTATCCTGA---------ATTCAACAG-GAAACT-ACAAATTTT---AAATATGATGTCTT------- ----AAAATTTCTCATCATAAG-AAAAACGTTATAACTGT--GTATGGTGACGGAGGCTTCCCTCGTGGCTCAGATGGTA CAGCTTCTGCCTGCAGTTCGAGAGACCTGGATTCAATCCCCGAGTCGAGAAGATCCCCTGGAGAAGGAAACGGCAACCCA CTCCAGTATTCTTGCCTGGAGAATAACCTGGTCGGAGGAGCCTGGTGGGCTACTGTCCATGGGGTTGCAAAGAATTGAAT GCGACTGAGTGACGTCATTCACTTTTCAGGGTGATAGATATTAAGC-----TTATAGTAATGATCGTATAAATACTGAAT CATTATGTTATATACCTAAAATGAATATAA-TGTTATATGTCAATGGTACCTCAATTAAA-------------AAAATGA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -ATCCTC---TGAGTTTTAAATTACTAACA-TTTATATATATA-TTTTTGCTTTTGACTGCAAT >Myotis_myotis AGA-TCCTTTCCCCAGCTTCAATACACC--ACTCAACAAGAAAAAT-GCAC--TTT---AAACATGAGCTATT------- ----AAAAGTTCTCATCACA---ACAAAAATAATAACCATGGGTATGGTGATGGATAGT--------------------- ------------------------AACTAGA-TTTATT------------------------------------------ -------------------------------------------------------------------------------- ------------------------------GTGGTGATCTTT---------TTGCAATA-----TATACAAATATTAAAT CATTATGGTGTACACCTGAAATGAATATAG-TGTTATAGATCTGTTATATTTCAATT----------------ATTTT-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -TTTCTC---TGCATTTTATATTATTAGTAGTGTTTTAATAC--TTTTTGCTTGTTAAACCAGT >Rhinolophus_ferrumequinum GCA-GTCCTTCCTTAGCTTCAACGTATC--TTTCAACAGGAAAACT-GCAA--GTT---AAATA--CTT-CTT------- ----AAAAGTTCTTATCACAAGAAAAAA-----CAATTAT--GTGGAGTGATGGATTTTA-------------------- ------------------------AACTAGA-CTTATC------------------------------------------ -------------------------------------------------------------------------------- ------------------------------ATGGTGATCATT---------GTACAATA-----CATAGGAATATTGAAT CATTGTGTTGTACACCTGAAACTAGTATAA-TGTTAAATGTCAATTATACCTCAACT----------------AAAAAAA TGA----------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --TTTTC---TGCATTTTATAGTATGAATAATATTTAAAAAT--TTTTTGCTTGCTACCCCGAT >Equus_caballus ACA-TTCTTTCATTATCCTCAGTATATT--TTTCAACATTAAAACT-GCAA---AT------CATGATTTCTC------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------TGCATTTTACATTATTAACAGTATA---------TTTTTTCTTGTTA---CAAT >Ceratotherium_simum ACA-TTCTTTCATTATCTTCAATATATC--TTTCAACATTAAAACT-GCAA--GTT---GATCCTGATTTCTC------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------TGCCTTTTATATTATTAATAGAATTTTAATATT-TTTTCGCTTGTTACCCCAAA >Condylura_cristata ATG-TTGTTTCATCACCTCCAATATATC--ATACAATAGGATAATAAAAAA--GTT---AAACA--ATTTCTA------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------TTCATTTTATATTAATAGTA--------------TTTTACTTTGTTACCCCAAT >Solenodon_paradoxus ATA-TTCTTTCATTATCTTCAATATGTC--TTTCAGCAGGAAAAC-AGCAA--GCA---AAACATAATTCCTC------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------TGTGTTTTATACTAATAATATTCTTGTA------TTTTTGCTTATTACCACCAT >Cavia_porcellus ATA-TTCATTTATAATATTCAATATAGC--TTTCAAGATGAGTACTAGAAA---TT---AAACATGCTTTCTC------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------TGTATTTGATACAGTTAAAATTACTTTAATTTTCTTTTTGCTTCTTTCAACAAT Bat235_LINE >L1MA9_3END --------------------------------------------------------------------------TTTTTC CAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTAT-ATATTTAAGGTGTACA-ACGTGATGTTTTGATATACGTAT ACATTGTGAAATGATTACCACAA-TCAAGCTAATTAACATATCC-ATCACC----------------------------- ---------------TCACATAGTTACCATTTTTTT------GTGTGTGGTGAGAACA---------------------- --------------------------------------------------------------- >Canis_familiaris GGAATACTCTCCATGCTTATGATGGAATATAAGAAGGAAAT--ACCAAAACA-----TTATTTTCCTTTCT--------T TTTTTTAATTAAAATATAACAGACATAG-AACACTGTGGAAAGTTTAAGATATACA-ATGTGTTGATTTGGTACACTTAT ATATTACAAAATGATTACTATAG-TAGTGTTAGCTAAAACCTTT-ATCATG--------GGGCTGGGGAATTAGGGAGAT GTTT------------------------ACTA--GTAG----ATAAATTCTGGAG------TTCTTTTTTCCTGTCT--- AATCCTTCCAAGG------AGTTCCTGATAC--AATGTGCCTTGGATAATTTAAAACTGTAAC >Felis_catus AGAATAGTCTCCATGCTTACGGTGGAATATAAGGAAGAAAC---ACAAAACA-----TTCTCTTCCCTTCT--------- -----AAATTAAGATAT------------AACACTGTGG-AAGTGTAAGGTGTACA-ATGTGTTGATTTGATACAC--AT ATATTACAAAATGATTACTACAG-TAGTGTTAGCTAACACCTTTAATCATG--------GGGCAGGGGAATTGGGGAGAT GTTG------------------------TTTACTTTAG----ATAAATTCTGGAG------TTC---TTTCCTGTCT--- AATCCTTCCAAGG------AATGCCTGATAC--AGTGTATCCTGGATAATTTAAAACTGCAAC >Manis_pentadactyla GGACTAGTATCTGTGCTTATGGTTGTAT-TAAGGCACAAAT--AACAAA-AA-----TTCTTCTTCTT-TT--------- -----AAATCAAGATATAACTGACATGT-AACTTTGTGT-AAGTTTAAGATGTACATATGTGTTGGTCTGATGTATTTAT ATATCCCAAGATGATTACTACCGTTACTGTTAGCTACCACCTTT-ATCAGG--------AACTGGGGAAATTGGGAAGAT GTTAAGG--------GTACAAACTTAAAACTA--GTAGGAA-AAAAGTTGTGGAG------CTCTCCTTACCTTTCT--- AATCATTCCAGCAG-----AGCACCTGATAT--AGTACGCCTTGGATAAGAAAATACTGCAAC >Sus_scrofa GGAATAGGTTCTGTGCTTACAGTTGAACACAAGGCAGAAAT--GCCGAAAGA-----CTCTTTTCCTTTTC--------- --TTTAAATTGAGATGGAACTGCCACAC-GAGACTGT---AAGTGTAAGGTGGACG-GCGTGTTGATG------ATTTAT ATACGGCCGGCTGATGGCTACAG-CAGGGCTAGTTAACACCTCT-ACTGCAGGCGGGCCGGGGGGGGGAGTTAGGGAGAT GCTGTTAAAAG----GTACAAACTCGCATCTG--GCGGAAAAATAGGTTGTGAAG------TTCTCTTTTCCTTTCT--- AATCCTTCCAAAG------AGTCCCTGGTACTGAGCACGCCTTAGAGAACTGAAAGCTGCAAC >Vicugna_pacos GGAATAGTCTCCATACTTATGGTTGAATATAAATATTCTCTATACCAAAACA-----TTCTTTTCCTTTCT--------T TTTTTTAATTGTGATGTAATTGACATAT-AGCATCATGT-AAGTTTAAGGCAGACA-GCGTGTTGATCTGATACATTTAG ATATTGCAGTGTGATCACTACAG-TAAGGCTAGCTAGTACCTCT-ATCCTG--------GGGTGGGAGAACCAGAAAGAT ATTAAACA-------GTACAAAGTTGCAACTA--CGAGATA-GTAAGTTCTGAAG------TTCT--TTCCCTTTCT--- GATCCTTCCAAAG------AGTACCTGATATAGAGTATGCCTTGGATAATTAAAAACTGCATC >Myotis_myotis GAA--AGTCTCCATGCTTATGGTTGAATATAAGGCAGAAAT--ACCAAAACA-----TCCTTTTCCTTTTT--------- ---TGAAATCGAAATTT----GACATAT-AACAT-------AGTTGAAGGTGTACA-ATGTGCTGGTTTGATACACTCAT ATGTTGCAATATGATTGCTAAGG-TAGAGCTAACTA----CTCT-ATCAGG--------AG--TGGGAAATTGGAAATTC GTTGTGTATGGGTCCATACAAACTTACAGCCA--GTAGGTAAATAAGTTCTGGAG------TTCTCTTT--CATTCT--- AATCCTTCCAAAG------ACTACCTGATATAGAGT---------ATAATTAACAACTGCAAC >Rousettus_aegyptiacus AGAATAGCCTCCATGGTTATGACTGACTGTAA--CGGAAAT--ACCAAAACA---TTATTTTTTTCCTTTT--------- ----TTAATTGAAATATAATTGACATAC-GACATTAGGT-AAATTTAAGGAGTACA-ATGTGTTGGTCAGACACACTTAC ACACTGTAATGTAACTGCTACAG-TAGAGCTGGC----ACCTTT-ACCATA--------GGGTGGAGGAATTGGGGAGAT GCTATTTAAGG----GTACCAACTTGCCACTA--GTAGATAAACAAGGGCTGGAG------TTCTCTTTTCCT-TCT--- AGTCCTTCCAAAG------ACTACCTGATATAAAGTATACCTTA-ATAATTAAAAACTACAAC >Equus_caballus GGAATAGTCTTTGTGCTTATGGTTGAAT-CAAGGCAGAAAT--ACCAAAACA---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------TC---TTTGCCTTCCT--- ATTCCTTCCCAAA--------------AGGTACAGTA---CTTGGCTAATTAAAAACTGCAAC >Ceratotherium_simum GGAATAGTCTCTGTGTTTATGGTTGAATATAAGGCAGAAAT--ACCAAAACA---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------TCTTCTTTTTCTTTCT--- AATCCTTCCCAAAAGGTACAGTACTTGATATACAGCACGCCTTGGATAATTAAAAACCGCAAC >Condylura_cristata GGA--AGTCTCCCTGTTTACAGTGGAATATAAGGCAGCAAT--TCC---ACA---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------CTTTCTTTCCCTTTCT--- CATCCTTCCAGAT------AGTGTTTGATACAGAGTTGGCCTTGGAT------------CATC >Scalopus_aquaticus GAA--AG----AGTGTTTACAGCTAAATAGAAGGCAGCAAT--GGCACAATC---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------TTTTCTTTTCCTTTCT--- CATCCCTCCA----------------GATATAGAGTAGGCCTCGGAT------------AATT >Homo_sapiens GGA-TAGTCCCTGTGCTTATGGCTGAATATCGGATAAAAATA-ACCAAGATA---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------TTCTCTTTTCCTTTCT--- AATCCTTCCACAA------AGTACCTGATTTACAGTATGCCTTGGGTAACTGAAAACTGCAAC Bat240_LINE >L1MA9_3END ----------------------------------------------------------------------GATCTTAAGT GTTCTCACCACA-------CACAAAAAAA---TGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTA ATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATAC CTCAATAAAGCTGGAAAAA------------------------------------------------------------- ---------------- >Sus_scrofa ATAATTTTAAGCACCAATTATATGCA-AGAGTAAGGTTACCTCTGTT---AAAAGTAACATTGACAG------------- ---CTCATCACATCATACACACATAAAAGATTGTGTAATTATGTTTGATGATGG--ATGTTAACTATACTTACTGTGATG GTCATTTTGCAATATATATAAATATTGTATCATTATGCTATATACCTGAAACTAATATAA-GATTATATGTCAATTATAT GTCAGTA----TGAAAAAAAA---AGAGGTAACCTTGGCAG---AGTGC-AAAATGCTGCATAGAGGCCCTCAGACCACT CCTGAGGAC-TTTGGA >Bos_taurus ATAATTTTAAGCACATACTATGGGCCAAAGGTAAAATTATGTCTGTT---AAGTATAACGTTGACAA------------- ---TTCATCACA---TGGCAAGGAAAAAATTTTTGTAGCTAT------TAAT----ATGTT--------------TGGTG GTCATTTTGTAATATATGCAAATAGTGAATCAT--------------------GTTATAA-CGTTCTTTGTCAATTTTAT CTCAATA---CAACAACAACA---AAA-GTA-TCT-GAGAG---AGTGA-AAAATACTACAAAGAAGCCCTTGGATCACT CCTGAGTTC-TTTGGA >Equus_caballus CTAATTTTAAGCACCGACTAAGTGCC-AGGGTAGGGTTACATCCATT---AGAAGTAATCTTGGCAG------------- ---CTCATCACA------AGAAAAAAATAAATTTGTAACTAAGTGTGGTGAGGG--ATGTTAACTACACTTACTGTGGTG ATCATTTTGCAGTATATACAAATACTGAGTCATTATGTTTTAC-CCTGAAAC---TATAA-TGTTATATGTTAATTATAT CTCAAT-----TTAAAAAAAA---AGAAGTAATCTTGGCAG---AGTGA-AAAACGCTGCACAGAGGCCCTTGGACCCCA CCTAAGGACCTTTGGA >Ceratotherium_simum CTAATTTTAAGCACCTACTATGTGCC-AGGATAGGGTTACATCCGTT---AGAAGTAACCTTGGCAG------------- ---CTTATCACA----AGAAAAAAAAGAAATTTGTTAACTATGTATGGTGATGG--ATGTTAGCTACACTTATTGTGGTG ATCATTTCCCAATATATACAAATACTACATCGTTATGTTTTATGCCTGAAACTAATATAG-TGTTATATGTTAATTATAT CTCAAT-----TAAAAAAAAA---AGG---AACCTTGGCAG---AGTGA-AAAATGCTGCACAGAGGCCCTTGGACCACT CCTAAGGACCTTTGGA >Myotis_myotis ATAATATTAAACAGCTCCCATATGTC-AGGGTAGGGTTACATCCATT---AGAAGTAAACTTGGCAG------------- ---CCTATCATA----AGAAAAAAAAAAAATC---TAACCATGTATGGTGATGG--ATGCTAACTACACTTATTTTGGTG GTCATTTTTCAGTATGTACAAATATTGGATCATTATGTT-TATACCTGAAATTAATATAA-TGTTATATGCCAATTATGT ATCAAT-----TATA---------AAAGGCAACCTTGACAG---AG--A-AAATTGCTGCACAGAAGCCCTTGGATCTCT CCTAAGGACCTTTGGG >Rousettus_aegyptiacus ATAATTTTAAGCAGCTACAATATGCC-AGGGTAGGGTTACATCCATT---AGAAGTAACCTCGACAG------------- ---CTCATTACA----AGAAAGAAAAAAA------CAAC-ATATATGGTGATGG--ATGTTAACCACCTTTATTGTGGAG ATCATTTTGCAATATATACAAATATTGAATCATTATGTTGTACACCTATAGCTAACATAA-TTTTATATGTCAATTGTAC CTTAAT-----TGGAAAAAA----AGAAGTAACTTTGGCAG---AGTGA-AAAATGCTGCACAGAAGCCCTCAGACAACG CCTAAGGAC-TT-GAA >Canis_familiaris ACAATTTTAAGCACCAGCTGTGTGAC-AGGTTGGGGTTATATCTGTT---GGAAATAACCATGGCTA------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------AGTGA-AAAATACTGCACAGAGG------------- -------ACTTTCAGA >Felis_catus AT--TTTTAGGCACCTACTATGTGAC-AGGGTAGGGTTATATCTGTT---AGAAATAACCTTGGCAC------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------AGTGA-AAAATACTGGACAGAGGCCCTTGGACCACT CCTCAGGACCTTTGGA >Manis_pentadactyla ATAATTTT-AGCACCTATTATGTGCC-AGGGTAGGGTTACATCTCTT---ACATGGAACCTTGATAG------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------AGTGAAAAAATTCTGCACAGAGG-CCTTGGACCACT CCTGAGGACCTTC--A >Condylura_cristata ATGA-GTTGAGCACCTACTATGTGCC-AGTGTAGGGTTACAT-TGTT---AAAAATAATCCT-ACTA------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------AGTGG-AAAATGCTGCATAGAGATCCTGGGACCA-G CCTAACGGTCTTTGGA >Sorex_araneus ATGATTG--------------------AGGGTAGGATGACATTTATT---AGAGAAGATCTTGGCTG------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------AGAGG-AA---GCTGTATAGAGACCATTAGATCACT CCTAAGGACCTTGAGA >Homo_sapiens ATGATTGTAAGCATCTATTATGTGCC-AGGGTAGGGTTATATCCATT---GTAAGTAACCTTGGCAG------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------AGTAA-AAAATGCTGCACAGAGGCCTGTGGACCACT CCTAAGGACCTTTGGA Bat241_LINE >L1MA9_3END -------------------------------------------------------------------------------- ---------------------------------------TTTTTCCAGCTTT----------ATTGAGGTATAATTGACA AATAAAAATTGTATATATTTAA----GGTGTACAACGTGATGTTTTGATATACGTATACATTGTGAAATGATTACCACA- ----------ATCAAGCTAATTAACATATCCATCACCTCACATAGTTACCATTTTTTTGTG------------------- -------------------------------------------- >Canis_familiaris CTTGGGACATGG-----CTTCCC-ACAGAGCAAGTGGTT--TGAGGG----CCAGAAGCCAC---ACTC----------T TC---ATTTTTTGC----------------CTTTAAAAAAAAATTTATTTTTTTA-------ATAGAAATATATTTGACA T---AAAATTGTGTAAATTTAA----GGTATA---CGTGTTGATTTGGTTCATCGATATATTGTA--ATGATTACCATT- ----------GTAGACACGATTTGCACCTTTATCAGGTC-CATACTG-CCTTCT----------ATCCCCT---CATCTC AGAAGTGACATACCACCGCTTTTGCCATATACTGTTGGTTACAC >Felis_catus CTCGTGACATGG-----CTTTCCCCCAGAACAAGTGGTC--TGAGAGG----CAGAAGCCAC---ACTC----------T TT---TTTG---------------------TTTTTAAATTTTATCTATTTTTT---------ATTGAAATATATTTGACA TAT-AACATTGCGTAAAGTTAAGTAAGGTATACACCATGTTGATTTGACTCATT-------------------------- --------------------------------------------------------------------------TGTATC AGAAGTGACATACCATCACTTCTGCCATATTCTGTTGGCTACAC >Manis_pentadactyla CTCATGACATGGCTTCCCTTCCC-CTAGAGCAAGTGATC--TG-GAAAGAGCCAGAAGGCAC---ACTG----------C CG---TTTTTTTTTGTGTGTGTGTGTGCCTTTTAAAAATCTTAGTTGTTTTT----------ATTG--ATCTGTTTGTTT TAT-AACATTGTGTAAATTTAA----GATATATGACATGTTGTTTTGATACATT---ATGTTGTA--ACAGTTCTCATTA CTGTAATACAGTAGTGTTTATTAGCACCTCTATCACATC-CATGCTG-CCTTTT----------AAAACCT---CATCTC AGAAGTGACATACCAACAGTTTTGCCATATTTTGTTGGTTACAC >Sus_scrofa TGTATGACATGG-----CTGGTCCCTGAAGTAGGTGATC--CAAGAGAAA--CAAAGGCCAT---ACTG----------C CT----------------------------TTGTTTGCCTTAAGCGATTTTCATT-------ATAGAACTACATTTGACA TAT-AATGTTGTGTAACTTTAG----GGTATATAATATGTTGATTTGATAGATTTATAAATTGTAGTATGATTCCCATT- ----------GTAGCAATGATTAGCTCTTCTATTGTGTC-CACACTT-CTTTTT----------ATAAC-----TACCTC AGAAGCAACAGTATGTCATTTTGGTTGTATTCTGTTTGTTACAC >Bos_taurus CTCATAACATGG-----CTTCTCGCCAAAGCAAGTGATC--TGGAAGAAAGCCAGAAGTCAA---ACTC----------C CT---TTTTTTTCCC---------------TTTAAAAAATTTATGTATT-------------ATTGAAATATATTTGACA TAA-AACATTGTGTAACTTTAA----GGTATATAACAC--TGATTTGATACATC----AGGTGTAATAAGATTGCCATT- ----------GTAGTGATAATTAGCACTTCTGTCACGTC-CACC----CTTTTT----------ATAACCT---AAACTC A-----GATTTACTGTTACTTTTACTGTGTTCTCT--GTTACAC >Equus_caballus CTCATGACATGG-----CTTCCC-CCAGAGCAAGTGATC--TGAGGGAG--CCAGAAGCCAG---ACTG----------C CT----------------------------TTTGAAAAATTTATCTATTTGTTTT-----TTATTGAAATGTATTTGACA TAT-AACCTTGTGTAAGTTTAAG---GTTATACAACATGTCAACTTGATATATTTATATATAGTAATATGATTGCCATT- ----------GTAGTGATAATTAGCACCTCTATCACGCC-CACA-TG-CCTTTT----------GTAATCT---AATCTC AGAAGTGCCATACCGTCACTTTTGCCGCATTCTGTTGATTACAC >Ceratotherium_simum CCCATGCCATGG-----CTTCCC-CCAGAGCAAGTGATC--TGAGAGACAGCCAGAAGCCAC---ACTG----------C CT----------------------------TTTTAAAAATTTATCTATTTATTTT-----TTATTGAAATATATTTGACA TAT-AATATTGTGTAAATTTAAT---TGTGTAAATTTATACAACTTGATACATTTATGTATTGTAATATGATTGCCATT- ----------GTAGTGATAATTAGCACCTCTGTCACGTC-CACATTG-CCTTTT----------ATAATCT---AATCTC AGAAGTGACATACCATCGCTTTTGCCATATTCTGTTGGTTTCAC >Myotis_myotis CTCATGACATGG-----TTTCCC-CCAGAGCGAGTGATC--TGAGAGA----CAGAAGCCAC---ACTG----------C CT----------------------------TTTAAAAAATTTATCTACTTATTTAATTTTTGATTGTAATATGCTTGACA TA------TTGTATAAATTTAA----AGTGTACAACATATTGATTTGATACATCTATACATTGTAATATGATTGCCATT- ----------GCAGTGATAA-TAGCACCTCTATC---TC-CACA-----CTTTT----------ATAACCT---AACCGC AGAAGTGACATACCGTCACTATTTCCATATTCTGTTGGTTACAT >Rousettus_aegyptiacus CTCATGGCATGA-----CTTTTC-CCAGAGCGAGTGATC--TGAGAGAGATCCAGAAGCTGC---ACTG----------C CT----------------------------TTTAAAATATATATTTTATTTTTAA-------ATTGTAATATATTTGACA T---AATGTTGTACTTATTTAA----GGTATACTACATGTTGAATTGATATATCTATGTATT-----ATGATTGCCACT- ----------GTAGTGATAATTAGCACCTCTATCAAGTC-CACACTG-CCTTTT----------ATAACCT---AATCTC AGAAGTGACATTTTGTCACCTTTCCCATATTCTGTTGGTCACAC >Condylura_cristata CACATGATACAG-----CTTCCC-CCAGAG---GTGGGA--ACAGAGAGAGTCAGAAGCTG----ATAA----------C TT------------------------------------------------------------------------------ -------------------------------------------------------------------------------- --------------------------------------------------------------------------CATCTC AGAAGTTTCTTACTA----TTTTGCCACATTCTGTTGGTCACAC >Solenodon_paradoxus CTCATGACATGG-----CTTTCC-CCAGAGGAAATGATC--AGAGAG----CCAGAAGC-AC---ACTGCCTTTTATAAC CT------------------------------------------------------------------------------ -------------------------------------------------------------------------------- --------------------------------------------------------------------------AATCTC AGACGTGACATACCATCACTTCTGCTATATCCTGTTGATGACAC >Homo_sapiens CTCATGGCATGG-----CTTCCC-CCAAAGCAATTGGTTAGAGAGAGAGAGCCCGAAGCCAC---AGTG----------C CT------------------------------------------------------------------------------ -------------------------------------------------------------------------------- --------------------------------------------------------------------------AATCTC AGAAGTGACAAATCATC-----------------------ACAC Bat250_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------TGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTC ACAATGTATACGTATATCAAAACATC--ACGTTGTACACCTTAAAT-ATATACAATTTTTATTTG--TCAATTATACCTC AATAAAGCTGGAAAAA---------------------------------------------------------------- ---------------------------- >Canis_familiaris TCAGGAGGGATATCTCAGATATGACACCTAATCTGAG-TTCGAGAGACAATC---AGAAGCTACCTGA---TGGGG-TGT AATGTACAGCACAATGAATACAGTTAACGAGACCATGTATTGTATATTTGAAAGTTGCTAAGGGAGTAGGTCTTAAAAAT TC---TCGCAAG-AAAATAAAT--TGGTAACTAGTTGAAGTGATATA--TTTTAACTAAATGAATTATGATGATCATTTC CCAATCTACACATACATCAAATCATTGCGTGTTGTATACCCTAAAAGTTGTGCAAT-GTTGTATGACTCACTTATATCTC AATAAAACTGGAAAAAAAGGA-ATATAGGGGGG------AAAA-GATACCTGA---GGAAAAAAGCT-TCACTGAAGGAA AAGAAAGAGCAAGTGAGAGAAAGCTTGA >Felis_catus TCA-GAGAGATTTCTCAGATATGAGACCTAAGTTGGCACTCGAGAGACAACG---AGACCTTACTTGA---TGGGGCTTT GACATACAGCGTGATGACTGCAGTTAACAACACAGTATACTGTAGACTTGAAACTTGCTTTGTGAGTAGATCTTAACA-T TCTCCTCACAGG-AAAAGAAAT--TGGCAACTATTTGAGGTGGTATC--TTTTAACTAAATGTATTATGGCGATCATTTT ACCATCTGTATATATCTGAGACCATT--ATATTGTACACCTTAAAG-TTATGCAGT-GTTATAGGGGCCAATTATACCTC AATAAAACCGGGGGAAAAAAGAATATGGGGGG-------AAAA-GTTATCTGA---AGGAAAAGGGTGTCAATG--GCAG AAGAAGGAGCAGGTGCAGGAAGGCCAGA >Manis_pentadactyla TCAGGAGGGATTTCTCAGATAGGAGACCTAATCAGAGACTTGAGAGACCATT---AGG-TGTGTCTGA---TGGGGATAC AGTGTATGTCGTGATGATCATAGTTAGCAACAC--CATATTGTATATTTCAAAGTTGCTAAGGGAATAAATCTTAAAAGT TCGTATGGTAAG-AAAAAATAT--TTGTAGCTATGCGAGGTGATGGA--TGTTAACTAAGTGTATTATGATAATTATTTT ATAATATACACTTATAGCAAGTCATT--ATGTTGTACACTTTAAAC-TTATATAAT-GTTATGAG--TCAA-TATATCTC AATAAAACTGGAAAAAAAGAAGACAGAAAAAAGAA----AGAA-GTTATCTGA---AGGAAGAGG----TATTA--ACAG AAGAAAGAGCAAGTGAGGAAAGGCTTGC >Sus_scrofa TCAGGAGGGATTTCTCAGCTATGAAACCCAAGCTGAGACTCGAGAGACAATT---GGAGGTTTTCTGA---TGGGGATGG AACATACAGCAGGATAACCACAGTCATCAGCAC--TGTGTTGTGTGTTTGAAAGTTGCTAGGGGACTAGGTCTTAAAC-T TCTCATCACAAGAAAGAAAAATGCGTGTAACTCTGTGAGGTGATGGA--TGGTAACTAAAC--ATTGTGGCAATCATTTC ACAATATATA--TTTACCAAATCCCT--ATGTTGTACAACTCAAGC--------AT-GCCTTATG--TTGATTATGTCTC CATAAAACTGGGGGAAATGC---CACAGGAAA-------AAAC-GTTTTCTGA---AGGAGAAGGTTATCACCG--GCAG AAGAGAAAGCGCGTGAGAGACGGCTGGG >Tursiops_truncatus TCAGGAAGGATTTCTCAGAT--GAGACCCAAGCTGGGACTTGAGAGACAATT---AGAAGTTATCTGA---TGGGGATGG AATATGCAACATGATAACTGTAGTCATCAACAC--TGTATTGTGTATTTGAAAGTTGCTAAGAGAATAGATTTTAAAAGT TCTCTTCGCAAG-AAAAAAAAT--GTGTAACTATGTGAGGTAATGGA--TGATAACTAAACATATTGTGGCAATCATTTC -CAATATATACGTTTATCAAATCATT--ATGTTGTATACCTTAAAC-GTATGCA------AAATG--TCAATTATATCTC AATAAAACTGGAAAAAAATA---AAGGGAAAGAAA----AGAA-GCTATCCGA---AGGAAAAGGGTGTCACAG--GCAG AAGAGAGAACAAGTGAGAGACGGCTTGG >Equus_caballus T-AGGAAGGATTTCTTAGATGTGAGACCTAAGCTAACACTTGAGAGACAATC---AAAAGTTATCTGA---TGGGGATGT AATGTACAGCATGGTGACTATAGTGCACAACAC--TGTATTGGATA--------TTGCTAAGGGCATCGATCTAAAAAGT CCACCTCAAAAG-AAAACAAAC--TTGTAACTATGTGAGGTGATAGA--TGTTAACTAAAGGTATTATGGTAATCATTTC ACAACATATACAAAAATGACATCATT--ATGTTGTACACTTTAAAC-TTACACAAT-GTTATAGG--TTGTTTATATCTC ATTAAAACTGGAAAATGAA----TACAGAGAAAAA----AGAA-CTCATCTGA---AGGAAAGGGATGTCATTG--GCGG AAGAGAGAGCAAGTGAGAGGAGACTTGG >Ceratotherium_simum TCAGGAGGGATTTCTTAGATATGAGACCTAAGCTGGGACTGGAAAGACAATC---ACAAGTTATCTGA---TGGGTGTGT AATGTACAGTGTGATGACTATAGTTCACAAAAC--AGTGTTGGATA--------TTGCTAAGGGAGTTGATCTTAAAAGT TCTCATCACAAGAAAAAAAAAA--TTGTAACTATGTGAGATGGTAAA--TGTTAACTAAATGTATTATGGTAATCATTTC ACAATATATACATATATTACATCATT--ATTTTGTACACTTTAAAC-TTACAC-------ATATG--TTGATTATATCCC AATAAAACTGGAA----------TACAGAAAAAGAA---AGAA-ATTATCTGA---AGGAAAGGGGTGTCATTG--GCAG AAAAGAGAGCAAGTAAGATAAGACTTGG >Myotis_myotis TT-GGGGGGATTTCACAGATAGGAGATCTAAGTGGGGACTTGAGAGATAATT---AGAAGTTTTCTGA---TAAGGATAT AATACAC----TTATGACTATAGTTAATAC-----TGGCTTACATATTTGAACATGGCAAGGAGAATAGATCTTAAAA-T TCTCATCACAAG-AAGAGAAATATATGTAACTATGTGAGTTGAT------------------------------------ ----------------------------------------------------------TTATATG--TCAATTATATTTC AATAAAACTGGAAAAATAAGA-ATACAG--AAAAA----ATAA-GTTATCTGA---AGGAAAAGGGTGTCACTG--GCCA AAGAGAGAGCAAGTGCGAGAAGGCTTGG >Rhinolophus_ferrumequinum GCAGGAGGGATTTCTCAGATA-GAGACCTAAACTGGGACTTGAGAGACAATT---AGAGGTTATCTGA---CGAGGATGT AATATACAGCATGAGGACTATAGTTAATGGCAC--TGTACTGGATGCTTGATAGTTGCTAAG-GAGTAGATCTTAAAAGT TCTCATCACAAG-AAACAATGG--TTGTCGCTACATGGGGTGATGGA--TCTTAACTGATCATACTGTGTTAATCATTTT GCAGTATATACACTTATGAAATC-----ATGTTATAGACTTTAAAC-TTGTACGAT-GTTATATG--TTAGCTATATCTC AATAAAACTAGAAAAAGTAAGCATACGGGAAA-------AGAA-GTTACTTAA---AGGAAAAGGGTATCACTG--GCGG AAGAGAGAGCAGGTGAGAGAAGGCTTAA >Condylura_cristata TCGGGACAGATTTGTCAGCTATGAGACCTAAGCTTGGACTTGAGAGACAATT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------AGAA--TTTGTTGA---AGTAAGTGAGTGTCACTG--GCAA AAAGAATA----ATGAGAGCAAGCTTGG >Uropsilus_gracilis TCAAGACAGGTTTCTCAGATATGAGATCTAAACTTAGACTTGAGAAACAATT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------AGAA--ATTATTAA---AGGAATTGGGTGTTGCCA--GCAG AAGGAGAA----AAGAGAGAAATTTTGG >Homo_sapiens TCAGGACAGATTTCTTGGATTTGAGATATGAGCTAGGACTTGAGAGACAATT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------AGAAAGTTATCTGG---AGGAAAAGGCTGTTACTG--GCGG AAGAAAGGGCAAATGAGA--AGGCTTGC Dog1_LINE >L1MA9_3END -------------------------------------------------------------------------------- --AAATGGGGAGATGTTGGTCAAAGGGTACAAAGTTT---CAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGTAC AGCATGGTGACTATAGTTAATAATACTGTATTG----------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------TATACTTGAAATTTGC TAAGAGAGTAGATCTTAAGT-GTTCTCACCACACACAAAAAAATG-GTAACTATGTGAGGTGATGGATATGTTAATTAGC TTGATTGTGGTAATCATTTCACAATGTA---TACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTT ATTTGTCAATTATA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------CCTCAATAAAGCTGGAAAAA---------------------------------------------------- -------------------------------------------------------------------------------- ---------------------- >Canis_familiaris TTACTTAAGAATGGAAACTACCTCCTCTAATTTAATGTAAACATATACTT----ATAG-------ATG-TTTATTACTG- -----------GAGGTTTATACCTTTTGACCACATTTACCCAGTTAT--AAAATAGAT--GTCTTAGGGATGTAATGTAT AGCATGGTGACTATCATTAATAATACTGTGTTG----------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------TGTATTTCAAAGTTCC TGAG--AGTAGATCTTAAAA-GTTCTCATCACA---AAGAACATTTGCAACTGTGT--GATGATGG--ATGCTAACTAGA CTTATTGTGATGATGA-TTCACAGCGTA---CACAAATACCAAATCCTTATGTCGTACACCTGTAACTAATATTATGCTC -TATGCCGATAATA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------TCTCAAAATTTTTAAA-------GAAGGTATTTATTACTG---TTATAGT-TA---ATTTTTGTGTGTGTGT G----------------------------------TGTGTGTGTATAAATGTGATGTA---------------------- -------------TGTTTTCCA >Felis_catus TTACTTAAGAATGGTAACCACCTCCTCTAATTTAATGTAAACACTTACTT----ATAG-------ATA-TTTATTACCG- -----------GAGGTTTGTACCTTTTGACTGTCTTCACCCAGTTAT--AAAATAAAT--GTCATGGGGTTGTAATGTAC AGCATGGTGACTGTAGTTAATGATACCGTATTGTAGGGGCTCTTGGGTGGTTCAGTTGGTTAAGCGTCTGACTCTTGATT TTGGCTCAGGTCATGATTTCATGGTTCAGTTCATGAGTTGGAGACCTGCATCGGGGATTCTCTCTTTCCCTCTCTCACTA CCCCTCCTCCCCTCTCTAAATAAACTTAAAACAAAACAAAACAAAACAAAAAAACCCACTGCATTGTATTTCAAAGTTCC TGAG--AGTAGGTCTTAAAA-CTTCTCATCACAAGAAAGAACATTTGTAACTGTG-GGGGTGGTGA--ATGCTAACTAGA CCTATGGTGGTGAT-------CAGTATA---CACAAATATGCAATCATTATGTGCTATACCTGTAGCTAATATAATGTTC -AATGTCAATAATA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------TCTCAATTTTTTTAAA-------GAAGCTGTTTATTACTG---TTTTAGT-TATATATATATATATGTATAT ACAGATATATATACCTGTATTATATGTAATATATTTTTTATATTATATATATAATATAATACACATATTATATATATATA AAATAAATGTGACTTTTTTTTA >Manis_pentadactyla TTCTTTAAGAAGGGAAATCACCTGCACTAAGGTAATGTAAATAATTCAAT---TATAA-------ATGTTTTATTACTG- -----------AAAGTTTGTACCATTTGACCACCTTCATCCAGGTGT--AAAATAAATAAGTCATGGGATTGTAGCATAC AGCATGGCGACTGTAGTCAATAATACTGTATTG----------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------TTTATTTGAAAGTTGC TACAAAAATAGATCTTAGAC-ATTCTCATCACAAGAAAAAAAAT--GTAACT-------GTGGTGA--ATGCTAACAAGA CCTGTTGTGGGGACCATTTTGCAATAGACACCACAAATATTGGATCATTATGTTGTAC------AACTAATATAGTGTTA -CATGTCAATTATA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------TCTCAT--TTTTT----------AGAGGTATTTATTAGCA---TTTTAGT--ACAAATAATAATAA------ -----------------------------------TTATTTTTTGTAAATATGGTATA---------------------- -------------TGGATTTTG >Sus_scrofa TTACTTAAGAATGAAACTCACCACCACTAGTTTAATGTAAACATTTGCTT----ATGG-------TTG-CTTACTACTG- -----------CAAGTTTGAATCTTTTGACCAGTTTTACACAGTTGT--AAAATAAATAAATCATGG-AACATAATGTAC AGCATGGTGTTTATAGTTAATATT----TATTG----------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------TATATGACAGTTAC TTAGAAAGTAGATCTTAAAA-GTTCTCATCAAAAGAAAAAAAATGTATAACTACATATGGTGGTAG--AAATTAACTAGC CTTATTGTGGTGATCATTTCACAATTTA---TACAAATACGGAATCA------GGTACACTTGAAACTAATATAATG--- -TATGTCAATTGTA------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------TCTCAA-----TTTAA-------AAAGATGCTGATTACTA---TTTTAGTCTAAAAATAT------------ -----------------------------------ACACTTTTTATAATTATAGTATG---------------------- -------------TAGTTTTTG >Bos_taurus TTACTTAAGAATGAAAATCACCCCCACTAATTTAATGTAAACATTTGCTT----ATAGCTGATAGCTG-TTTACTACTG- -----------AAAGTTTGTACCTTTTGACCACTTTCATCCAGTTAT--AAAATAA------------GATAAAAT-TAC AGCATGGTGATTATAGCTAATAATACTACATT------------------------------------------------ -------------------------------------------------------------------------------- ----------------------------------------------------------------TATATTTGAAAATTAC TTAG------TATCTTAAAATGTAATCATCACAAG-AAAAAAATATGTAACTATATAAGGTGGTAG--AAATTAACTAGA CTTATC-TGGTGATCATTTTACAGTATA---TACAAATAT-------------TGTATACTTGAAACTAATATAATGTTC -TATGTCAATTATGTGTGTGTGTGTGTGCCCCAGTCGTGTCTGACTCTGTGACCCCATGGACTATATCCTGCCAGGCTCC TCTGTCCATGGAATTTTCCAGGCAAAAATCCTGGAGTGGTTTGTCATTTCCTTCTCCAGTGGATCTTCCCAACCCAGGGA TCAAACCTGTATCTCTTGCATGTCCTGCATTGGCAGGCAGATTCTTTACTACTGAGTCACCTGGGAAGCATATAATATGT CAGTTATATCTCAA------TTAA-------AAAGATGTTTACTAATG---TTTTAAT-TTCAAAAATGTA--------- -----------------------------------CATTATTTTGAAAATGTGATATA---------------------- -------------TAATTTTTG >Equus_caballus ------------GGAA-ACACCTCTACTTATTTAATGCAAACATTTGCTC----ATAG-------ATG-TTTATTACTG- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------TTTTAGT-TACAGATAATCTG-------- -----------------------------------TTTTTTTTTGTAAACGTGGTATA---------------------- -------------TGGTTTCTG >Ceratotherium_simum ------------GGAA-CCACCTCCACTAATTTAATAGAAACATTTGCTT----ATAG-------ACG-TTTATTACTA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------TTTCAGT-TACAAATAATCT--------- -----------------------------------TTTTTTTTTGGAAATGTGGTATA---------------------- -------------TGGTTTTTG >Myotis_myotis ------------GGAA-CCACCTCTTCTAATTCAATGCAAACATATATGT----ATAG-------ATG-TTTAGTATGG- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------CTTTAGT-TACAAATA------------- -----------------------------------ACTTTTTTTGTAAGTGTGGTGTA---------------------- -------------AGGTTTTTG >Rousettus_aegyptiacus ------------GAAA-CCACCTCCACTAATTTAACAAAAAC-ACTTGCT---AATAG-------TTG-TTTAGTACTG- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------TTCTAGT-TACAAATA------------- -----------------------------------ATTTTTTTTCTTTAAGTGTGATAA--------------------- -------------CTTGTTTTA >Condylura_cristata TTCCTTACAAATGGAAACTCCCTCCTTTAGCTTATTACAAATATTTGCTT----ATAG-------ATG-TCTATTATGC- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------TTTCAAC-TACAGATAACC---------- -----------------------------------CCTTTTTTGGTAAAAATAGTA------------------------ -------------TGTTTTTTG >Sorex_araneus TGACTCAAGAATGGAA-CGTCCTGCATTAAGCTAATGTGAACACTCATTT----ACAG-------ATA-TTTATTGCTA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------TTTTAGA-TACAAAGA------------- -----------------------------------ATTTCTGTTGGTAACGTGGCCTA---------------------- -------------TTCCTTTTG >Homo_sapiens TTACTTACAAAAGGAAACCACCTCCACTAATTTAATGCAAACATTTGCTT----ATAG-------ATG-TTTGTTACTG- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------TTTTAGT-TGAAAATATTT---------- -----------------------------------TTTCTTTTTGTAAATGTGGCATA---------------------- -------------TAATTTTTG Dog1_LTR >LTR109B -------------------------------------------------------------TGTTAAAATCAAANACAAA TGGAGACCAGCCTTGAAAATTCCCTGAGC-AGAC-AAAACCAGTTTAGTCATACAAGCAAAGCTTAATTTAGCTTATTTT GC--AAGACTAACTTGAC----------CTGGGTCATTTCTTGCTT-ATGCCTCTGGAAATCATAAGCGAAACTTAAACT GTTTCCCAAA---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------ATTGATATGAGGTAACCACTAACCAATTCCCTATCATTTAAGAAA ATTCTAATATTATAACCAATCAC-------TGTGAAGAATAAACAGTCACTGCCTCCTCACTATATAAGCTGCTTTATAA CAATATA---CCCCTGAGCCTCATTCCATGTTTTGGTTTGAGTGCTCCCGGTTCGCGAACTGTCTTT-TTGGTGTGTGCA CAATAAACTTT--------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------TACTAATTACTACT---TCGGTGAT TCATTGG-TTTTACTTCTGCTATT-------------TCTGAACTTTTGACA---------------------------- -------------------------------- >Canis_familiaris TGAGCAAGCACAAGCTTCTCAAATTAGGCCTCTCCGTGAATGTGCTCCTAA---GCAC---TGTTAAAATCAAACACACA CGGAGACCAGACTTGAAAATTTCCTGAGCCAGACAAAAACCAGTTTTGTCATACAAGCAAAGCTTAATTTAGCTTATTTT AC--ATGACAAACGAAGC---TAACGACCTGGGTCACATCTTGCTT-ATGCCTCTGAAAATCAGAACCAAAACTTAAATT CTTCCCCCAA---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------AATTGATAGGAGGTAACCATTAACCAGTTCTCTTTCATTTAAGAAA ATTCTGATGTTGTTACCAATCAC-------TGTGAAAAATAAACAGTCACTGCCTCCACGCAATATAAGGTGCTTTATGA CAGTATT----CTCAGAGCCTTGTGCTGTGTTTTGGTTTGAGTGCTCCTGACTTGCAAAAGGTCTTTCTTGGTGTGTGTT CAATAAACCTT--------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------CACTAACT---------TCAGCAAT TCCTTGGTTTTTACTTGCGTTTTTGTTCTTATTTTTTC--AAACCTTTGACA---GTAC---TAAGCTGCCAAATGGCCA ATTGGGGCTAAATAAGAGATCTGGTGCACCTG >Felis_catus TGAGCAAGCACAAACCACTCAAATGAAGCCCCTCAGTGAAGGAGCTCCTAA---GCAC---TGTTAAAACCAAACACAAA TGGTGACCAGACTTGAAAATTTCCTGAGC-AGAC---AATCAGTTTAGTCCTACAAGCAGAGCTTAATTTAGCTTATTTT GC--ATGACAAGTGAGGC---TAACAACTCGGGTCACATCTTGCTT-CTGCCTCTGAAAATCATAACAGAAACTTAAATT GTTCCCCCAA---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------ATTGATATGAGGTAACCACTAGGCAATGCTCTTTCATTTCAGAGA ATTCTAATGCTGTTCCCAGTCAC-------TGTGAAGAATCAACAGTCACTGCTGCCACACTATATAAACTGCT-TGTAA CAATATAC---TCGGGAGTCTCATACCCTGTTTTGGTTTGAGCGCTCTGGGTTTGCAAAGTCTCTTT-TTGGTGTGTGCA CAATAAACTT---------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------CCACTAATTACTACTACCTCAGTGAT TCCTTGG-TTTTACTTTTATTTTTGTTTTTGTTTTTTCCTAAACCTTTGATA---GTAC---TAAACTGCCAAATGGCAA ATTGGGGCTAAGTAAGAGATCTGGTGCACCTG >Manis_javanica CAAGCAAGCACAAGCTACTCCAACTGGGTCCCACAGCAAATGAGCTCATAA---GCAC---TGTTAGAACCA----CAGT CGTAGACCAGACTTGAAAATTCCCTGAGC-AGAC-AAAACCAGTTTCGTCATACAAGCAAAGCTTAATTTAGCTTATTCT GC--AAGACAAACGAGGC---TAATGATCTGGTTCATTTTTTGCTT-GTGCCTCTGAAAATTATGAGTGAAATTT-AATT GTTCCCCCAC---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------ATGGATATTAGGTAACCATGAATCAATCCCCTTTGGCTTAAGAAA ATTCTAATATTGTAATCAATCACTAGATTGATTCATGAATAAACTCTCACTGCTTCCACACTGTATACATGGCTTTATAA CAATATAC---CT--GAGACTTATTTCCTGTTTTGG--CAAGGGCTCCTGGTTTGCATCCTGCCTTT-TTGGTATGAGCA CAATAAACTCT--------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------TATTAATTACTACT---ACAGCGGT TCAGTGG-TTTTAGTTTGACTTCTGTTTTTTTTTCCCCCTGAACTTTTGACA---GCAC---AAAACTACCAAATGGTAA ATTGGGGATAAATAAGAGATCTGGTGCACCTT >Sus_scrofa TGAGCCAGCACATGCTACCCAAACAAGTCCCCCCAGTGAATTGGCGCCTAA---GTGC---TGTTAAAAGTCAA------ ------------------ATTTCTTGAGC-AGAC-AAAACCAGTGCAGTCAGACAAGCAAAGCTTAATTTAGCTGATTGT GCAAAAGACAAGTGAGGCTTCACTTGACCTGGGTCACTTCCCACTT-AAGCCTCTGAAAATCATAAGTGAGACTTAAATT GTTGCCCCCA---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------GTTGATATGAGGGAACCACTAACCAATTCTGTTTCATTTATGAAA ATTCTAACATTGTAACCAATCACT------TGTGAAGAGTCAACAGTTACTGCCTCCACATTACATAAACTGCTGTGTAA CAATCTGTAAACTCTGAGCCTCCTTCCATATTTTGGTTGGAGC-TGCCTGGTTTGCAAACTGTCTTT-TTGGTGTCTGTA CCATAAGCTTT--------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------TACTAATCATGACT---TCAGTGAT TCATTGG-TTTTGTTTCTGTTTTT-TGTTTGTTTTCCCCTGTACTTTTGACA---GC--------------TACGGGCAC CTTGGGGATAAGGAAGAGATCTGGTGGACCTG >Bos_taurus TGGGCAAGCACACACACCCCAAATTAGGCCCCTCAGTGAATGAGCTTGTAA---GCAC---TGTTAAAACCCAACACAAA CAGAGA-----CTTGAAAATTCCCTGAGC-AGAC-AAAACCAGGGTAGTCAGACAAGCAAAGCTCAATTTATCGGATTTT GC--AAGACAAGTGAGGC-TCACTTGAC--GGGTCTCTTTTCAAGG-ATGCCTCTGAAAATC----ATGAGACTTAAATC ATTCTCCCCATTTATAGGGGCTTCCCTGGTAGCTCAGCTGGTAAAGAATCTGCCTGCAATGCAGGAGACCCCAATTCGGT TCCTGGGTCAGGAAAGCCACTGGAGAAGGGAACGGCTACCCACTCCACTATTCTTTGGGCTTCCCTGGTGGCTCAGATGG TGAAGAATCCACAGGCAGTGTGAGAGACCTGGGTTTGATCCTGGATTGGAAAGATCCCCTGGAGAAGAGAAAGGCTACCC ACTCCAGTATTCTGGCCTGGAGAATTCAATAGACAGAGGAGCCTGGCAGGCTACAGCCCCTGGGGTCGCAAAGAGTCGGA CATGACTGAGTGACTTTCACTTCTCACTTTCCCCCATTTATAGGTGGGAACCGTGAACCAACTCCCTTTCACTTCAGAAA ATTTTAATGTTGTAACCAAGCGC-------TGTGAGGAATCAACCGTCAGTGCCTCCACATTATATAAGCTGCTCTGTAA CAA----------------------CCATCTCTGAGCCTCGTTGCTCGTGCTTTGCAAGGTGTCTTA-TTGGTGTGTGTA CAATAAACTTCTGGGTTTCCCAAGTGACTCACTGGTGAAGAACTGCTTGCCAGTGCAGAAAATGCGGGTTCTACCCCTGG GTTGGGAAGATCCCCTGGAGAAGGAAAGGGCAATCCACCCCAGCATTCTTGCCTGGGAAATCCCATGGACGAGGAAGCCT GGTGGACTACAATCCATGGGGTCACAAAGAGTCCGACACGACTTAGTAGTAGCACCATAAACATATACCA--TCAGTGAT TCACTGG-TTTC----TGGGTT----TTTTTTCCTCTCCTGAAC-TTGGACA---GCAC---TAAACAGCTAAATGGCAC ACTGAGGATAAATAAGAGATCTGATGCACC-G >Equus_caballus TGAGCAAGCACAAGCTACTCAAATTAGGCCCCTCAGTGAACAAGCTCGTAA----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------GCAC---TAAACTGCCAAATGGCAA ATTGGGGATAAGTAAGAGATCTGGCGCACCTG >Ceratotherium_simum TGAGCAAGCACAACCTACTCAGATTAGGCCCCCCAGTGAATGAGCTCGTAA----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------GCAC---TAAACTGCCAAATGGCAA ATTGGGGATAAGTAAGAGATCTGGCGCACCTG >Myotis_myotis TGAGCAAGCACAAGC--CTCAAATTAGGCCCCTCAGTGAATGAGCTTGTAA----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------GCAC---TAAACTGCCAAGTGGCAA ATTGGGGATAAGTGAGAGATCTGGTGCACCTG >Rousettus_aegyptiacus TGAGCAAGCACGAGCTACTCAGATTGGGCCCCTCGGTGAATGAGCTCGTAA----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------GCAT---TAAACTGCCAAAAGGCAA ATTGGGGATAAGTAAGAGATCTGGTGCACCTG >Condylura_cristata TGAGCAAGCACAATCTACCCAAATTAAGCGCCTCAGAGAAGGAGCT--TAA----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------GCAC---TAAACTGCCAAATGGCAA ATTGGGGCTCAATAAGAGGTCTGGTGCACCTG >Sorex_araneus TGAGCATGCACAAACTACTCAAATTAGGCTTTTCGGTGAATGAGCTCTTAA----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------GCAT---TAAATTGCCAAATGGCAA ATTGGGGATAAGTAAGGGATTTGGTGCACCTG >Homo_sapiens TAAGTACATGCAAGCCACTCAAATTACACCCCTCTGTGAATGAGCTCTTAA----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------GCAC---TAAACTGCAAAAAGGCGA ACTGGGGATAAGTAAGAGATCTGGTGCACCTG Dog2_LTR >LTR9A_EC ----------------------------------------------------------------------TGTGTAGTGT AAGCCCTGACAGTTGTTTT---TTTTTTCTTTTTTGTAATGCAAGTGCCTGAC-TTAAGCTTTGATTGCTGAGGCATCCA CTTCAAA-GAGGCATCC--------------------------------------------------------------- ------------------------------------------------------------------------ACTTCAAA GATGGCTATCTCGAATAAACACATTGCC-AGCCAC--ACGACTAGATAAAGAGCCAGGCCGCCTCCCCCCACTGAGGCTC CTTTGTTTTAGAGATCTTGGTTGATTTCAATAA-CTGACCATT--------------TGGGCCACTTGTTTTTTTTTCCT CTTCCTGTGCTTTAAATTCCNACTCTT-ATGTTTTAAATTCACCAATAAAGAGTGAGCCCACGAAACCCTA-GGCCCCCA CCCTCAACCCCAATAAAAGCAGAACCCCAG------GCCCGT-------------------------------------- GTACTCTC---TCTCTCTCTCTCTACCCGTGACCTCGCTGTGTGG-CCCCAGGTGTGCTGTGTAATTTCCAGG------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------TCCTGTAAGTAATAAAC CTTTATTTTTTCA--AAGTTTCCTGATGGTTATTGCTGAAGGGCATCTTGCAATCATA---------A-TAAGAACCACA AGGGCTGGTCCAGCCACAACATTG-GTTATTGATAGGCTGAGACNGGCACAAAACA------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------ >Canis_familiaris TAATAAGTATAAGAAAATTAATAAATGAGTA-AATTACTGTCTGAG--------TGAT-G---AGTT------ATAG-AT CAACCCTAACAACTGGTTTTCTATTTTTCTTTTGTGTAATGCAAGTGCCCCAC-TTAAGCCTTGATTG------------ --TCAAA-GTG---TTC--------------------------------------------------------------- ------------------------------------------------------------------------ACTTCAAA GATGGCTA-ATCTGATAAACACATTATC-ACCCACAGTAGACTAGATAAAGGTCCAAGCCACCTCCTCTGGCTGAAGCTC TTTTATTTTAGAGATCTTGGTTGATTTCAATTA-----CTATT--------------TGGGCCACTTGTTCTTT---TCT CTCTCCGTGCTTTTAATTCCCATTCTT-ATTTTTTAAATTGACCAATAAAGAGTGAGCCCAGAAAACCCTA-GGCTTCCA CCCTGAACCCCAATAAAAGCAGAACCTCAT-------------------------------------------------- AAGTTCTCTGTTCTCTCTCTCTCTACCTGTGATGTCACTGTATGGCCCCCAGGTGTGCTGTGTAATTCACAGG------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------TCTTATAAGCAATAAAT TTGTAATTTTTCA--AAGTTTCCTGATGGTTATTGCTGAAGGGACTCTTGTAATTACA-------------AGAACCACA -------------------CATTG-GTTATTGAGAGGATGAG----GCACAAAATATT---GATG---TGCACTCATATG AATTTTTATTTTTTAAATTATTTTTATTTGGGATCCCTGGGTGGTGCAGCGGTTTGGCGCCTGCCTTTGGCCCAGGGCGC GATCCTGGAGACCCGGGATCGAATCCCACGTCGGGCTCCTGGTGCATGGAGCCTGCTTCTCCCTCTGCCTATGTCTCTGC CTCTCTCTCTCTTTCTGTGTGTGTGACTATCATAAATAAATAAAAATAAAAATAAATTTTTTAAAATTATTTTTATT--- TATTTTTATGTGAATTTTTA--AAACAAAACTAAGATCATAGAGTAGGCAT-GC >Felis_catus TAATAAATATAAGAAAATGAATAAATGAGTAGGATTAGTGTATGAA--------TGAT-G---ATTT------ATAGTAT AAACTCTGACAATTGGTTT--TATTTTTCCTTTTTGTAATGCAAATGCTGTAC-TTAAACCTTGATTG------------ --TCAAA-GTG---TCC--------------------------------------------------------------- ------------------------------------------------------------------------ACTTCAAA GATGGCTGTCTCCAGTAAACACGTTGTCTAGTCACAGTAGACTAGATACAGAGCCAGGCCACCTCCCCTGACTGAAGCTC TTTGGTGTTAGAGATCTTGGTTGATTTCAAGTA-CTGACCATT--------------TGGGCCTCTTGTTTTTT----CT CTCCTTGTGCTTTAAATTCCCATTCTT-CTGTTTTAAATTCACCAATATAGAATGAGCCCACAAAACCCTA-GGCTTCCA CCCTCAACCCCAATAAAAACGGAACCCCAACATTCTGCTTGC-------------------------------------- TAGCTCTC---TCTCTCT-TGTCAACCTGCGACCTCA--GTGTGG-CCCCAGGTGTGCTGCGTAATTTGCAGG------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------CCTTATAAACAATAAAC TTTTAATTTTTCT--GAGCTTCCTGATGGTTATTGATGAAGGGCATCTTGCAATCATA---------A-TAAGAACCACA ------------------ACATTG-GTTATTGATAGGCTGAGATCAGCACAAAACATT---GATA--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- TACACCCATATGAATTTTTA--AAACAAAACTAAAATCATAGAGTAGGCACTGC >Manis_javanica AAATAAATGTAAGAAAATGAGTAAATGAATG-GATTGGTGTATGAA--------TGATAT---GATA-------TAGTAT AAACCCCAACGA--GTTTT----TTTTTCCTTGCTGTAATGCAAGTGTCTGAC-TTGAGCTCTGATTG------------ --CCAAG-GCA---TCC--------------------------------------------------------------- ------------------------------------------------------------------------GCTTCAGC TGTGGCTGTCTTGAATAAACA-GCTGCC-AGCCCC--TTGCCTAGGTATAGCACCAGGCCACCTCTCCTGACTGAGGCTC TTTTGTTTTAGAGATCTTGGTTGATTTCAATGA-C--ATTACT--------------GTGGGCCCTTGTTTTTT----TC CTCTCTCTACTTTAAATTCCTGCTCTTAATGTTTTAAATTTACCATTAAAGAATGAGCCTGTAAAAACCTA-GGTCCCCT CCCTCGACCTAATAAAAAATAAAACCCTT-------GACTGT-------------------------------------- GAGCC------ACTTTTTCTCTCTACCCACAACCTCACTGTGTGG-CCCCAGGTGTGCTGGGTAGTTTCTAGT------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------TCCTATAAATAGTAAAC CTTTACTTTTTC----AGTTTCCTCATGGTCATTGCTG-AGGGTATCTTGTAATCATA---------ATTAAGAACCACA AGGGTTGGTCCAACTTAAACAATGAGATATTGATAGGCTGAGACCAGCACAAAATAT----GATA--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- TACACTCATAGGAATTTTTA--AAACAAAAATGAGATCATACAATAGGTGTTGC >Sus_scrofa TAATAAATATAAAAGAATGAATAAATGAAGG-GGTTAGTCTATGAA----GGATTAAT-G---GATG------ATGGTAT AAACTCCTACAGTTTTTGT--TTGTTTTTGTTTTTCTAATGCCAGTGCCTGAC-TTCATCTTTGCTGG------------ --CTGAG-GCA---TCC--------------------------------------------------------------- ------------------------------------------------------------------------ACTTCAAA GGTGTCGGTCTCGAAGAAACACATTGC--------------------AGAGAGCCAGGTCACCTCCCCACACTGA-GCTC CTTAGTTCTAGAGGTCTTAGTTGATTTTAATAA-CTGATGATGTA--TTTCTTTCAGTTGGCCACTTATTTTTG------ -ACTTCATGCTTTACATATCCACTCTT-ATGTTTTAAATTCACCAATAAAGAGTAAGACCAAGACAGCCTT-AGCCCCCA CCTTAGACCCAGTAGAAACAGGAACCCTGCTGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGCGCACAGGCAC ATGCGCTCATGTTCTACTCTGCCTACCCG-GACCTCACTGTCTGG-CCTCAGGTGTCCTGTGTAATTTCTGGG------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------TTCTATAAATAGCAAAC CTTTATTTTTTTTTCAAGTTTCCTGGTGGTTATTACTGAAGGGTGTCTTGCATTCATATGCATTCATATTGGGAAGCACA TGGGCCAATCCAATAACAATATC--ATTGTCAGTAGGCTGAGACT----------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- TGCACCCATATGAATTTTTA--AAACAAAAATTAGATCATACAATAAGGATGGC >Bos_taurus TAATAAATATGAAAGAATGGATAAATGAAGG-AGTTAGTCTATGAATGATGCATTGAT-G---GTTT------ATAGTAG AAACCCTGAGAG--GTTTT---GATTGTCGTTTTTTTATTGAAAGTGCCTGACTTTAAGCTTTGATTGCTGAGGCATCTA CCTCAAAGGTGGTGTCCATGGAGTTTCCCAGGCAAGAATACTGTGGTTGGTTGTCATTTCTTTCTCCAAGGGATCCTCTC AACCGAGGGATTAAACCCAGGTCTCCTGAATTGCAGGCAGATTCTTTACTGACTGAGCTGCCAAGGATGCTTACTTCATT GGTAGCTATCACTAATAAACATATTTC--------------------AGAGATCCAGGTCCCACCCCCAACTTGTAGCTC CTTTGTTTTAGAGGTGTTAGTTGATTTTAATAATCTGATGATTCATTTTTTTTTCAATTGGCCACTTAGTTTTT------ CTCTTCCCACTTTACATTTCTACTCTC--TCTTTTAAATTTGCCAGGGAAGAATGAGCCCATAAAAACCCATAGCCCCCA CCTTTAACCCCAGTAAAAGCAGAAACTCAGGCCCATGCTTGG-------------------------------------- -----------TCTCTTTCACTCTTCCT---------CTGTGTGG-TCCCAGATGTACTGTGTAATTCAAGATGCTGTAA GTCATCAGTTCAGTTCAGTCGCTCAGTCGTGTCCTACTCTTTGTGATCCCATGGACTGCAGCATGCCAGGCTTCCGTGTC CATCACAAACTCTTGGAACTTGCTCAAACTCATGTCTGTCGAGTCTGTGATGCCACCCAACCATCTCATCCTCTGTCGTC CCCTTCTCCTCCTGCCTTCAGTCTTTCCCAGCACTGGAGTCTTTTCCAGTGAGTCAGTTCTTTGCATCAGCTGGCCAAAG TATTGTAGCTTCTGCTTCAGCATCAATCCTGCCAATGAATATTCAGGACTGACTTCCTTTAGGATGGACTGGTTGGATCT CCTTGCAATCTAGGGGATTCTCAAAGAGTCTTCTCCAACACCGCAGTTCAAAAGCATCAATTCTTTGGTGCTCAGCTTTC TTTATAGTCCAACTCTCACATCCATACATGACCACTGGAAAAACCATAGCTTTGACTAGACAGACATTTGTCGGCAAAGT AATGTCTCTGCTTTTTAATATGCTGTCTAGGTTCGTCATAGCTTTTCTCCCAAGGAGCAAGTGTCTTTTAATTTCATGGC TGCAGTCACCATCTGCAGGGATTTTGGAGCCGCCAAAAATAAAGTCTGTCACTGTTTCCATTGTTTCCTCATCTATTTGC CATGAAGTAATGGGACCAGGTGACATGGAATGTTGAGTTTAAGCCACTTTTTTTTTCACGCTCCTCTTTCACTTTCATCA AGAAGCTCTCTAGTTCTTCTTCACTTTCTGCCATAAGGGTGGTGTCCTCTGCATATCTGAGGTTGTTGACATTTCTCCCA GCAATCTTGATTCCAGCTTGTGCTTCATCCAGCCCAGCATTTCACATAATGTACTCTGCATATAAAAGTTTAATAAGCAG TGTGACAATGTACAGCCTGTTCGTACTCCTTTCACAGTTGGAACCATCTATTGTTCCATGTCTGGTTCTAACTATTGTTT CTTGACCTGCATACAGATTTCTCAGGAGGCAGGTAAGATGATCTGGTATTCCATCTCTTGAAGAATTTCCTACAGTTTGT TGTGTTCTACACAGTCAAAGGCTTTGGCGTAGTCAATAAAACACAAGTAGATGTTATTCCGGAACTCTCTTTCTTTTTCT ATGATGCAATGGATGTTGGCAATTTGATCTCTGGTTCTTCTGCCTTTTCTAAATCCAGCTTGAACATCTGGAAGTTCATG GTTCACATACTGTAGAAGCCTGGCTTGGAGAATTTTGAGCATTCCTTTGCTAGCGTGTGAGATGAATGCAATCAGTCGTG TGGTAGTTTGAATGTTCTTTGGCATTGGCCTTCTTTGGGATTGGAATGAAAACTGACCTTTTCCAGTCCTGTGGCCACTG CTGGGTTTTCCAGATTTGCTGGCATATTGAGTGCAGCACTTTCACAGCATCATTTTTTTAGGATTTGAAATAGCTCCACT GGAATTCCATCACCTCCACTAGCTTTGTTATTAGTGATGCTTCCTAAAGCCACACAAAGATGCTTCTGTAAATTATAAAC CTTTATTTTTTC---AAGTTGCCTGGTGATTATTGCTGAAGAGTGTCTTGCACTT----------------AGAACCACA AGGGCTGGTTCAATAACAGTGTTA-GTTATTGGTAGGCTGAAACTGGCACATGA--------AGA--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- TATACCCATATGAATTTTTT--AAACAAAAATTAGATCTTACAATAGGTATTGC >Equus_caballus TAGTAAATATAAGAGAATGAATAAACGAATT-GATTAATGTATGAA--------TGAT-G---GATA------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- TACGCCCATATGAATTTT----AAACAAAAATTAGGTTATATAACAGATATGGC >Ceratotherium_simum TAATAAATAGAGGAGAATGAATACATGAATG-GATTAATACATGAT--------TGAT-A---GATA------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- TACACCCATGTGTATTTTT---AAACAAAAATTAGATCATACAACAGGTATGGC >Desmodus_rotundus TAATAAATATAAGACAAGGAATAAATTAATA-GATTAATGTACGAA--------TGAT-G---GATA------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- TCCATCCATATGAATTTTT---AAACAAAA-TTAGATCATAAAATAGGTATTAT >Rousettus_aegyptiacus TAATAAATACAAGACAATGAATAAATGAACA-GATTAGTGTATGAA--------TGAT-G---GGTA------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- TATATCCATATGAATTGTT---AAATAAAAATTAGATTGTACAATAGGTATTGT >Condylura_cristata TAATAAGTACA--ATGAGTAATAAATAAATG-GATTAGTGAATGAG--------TGAT-G---GAGA------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- TACACCAATATTAAATTTG---TAACAATAATTAGGTCATGCAATAGATAATGC >Sorex_araneus TAATACGT-----GAAATGAATAAATATAAATAATTAGT----AAA--------TGAT-G---AATG------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- AGCATATATATGCATGTTTATTAAATAAAAATTCTATTATGCAATAGATATCAC >Homo_sapiens TAATAAATATTAGAGAGTGAAGAAATGAATG-AATTAGTGAACAAG--------AAAC-G---GATA------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- TACACTGATATGAATTTTTT--AAACAAAATCTAGATTAT-----AAGTATTGC Dog3_LTR >CARERVR1_LTR --------------------------------------------------------------------------TGTTGG GGAAGGTCATCG-AGAAGACGTGACCGCCGGTTGACCCGTGAGCTGGAC-----CCGGGCAATCAGAGGCTCCTCACCCC CTCCCCTGTCCTTGGAATGTGGGTTCCGCTTGCCTTCCCCGCTCCCAGAGGCTGCTCCAAGGACACAGCCTTGAGATA-- GTGA-----TGTGGTGTTGAGAACACCTGNACGGTATACGTGACTGAACCCAGTTAAGGCCTCTATATAAACTTTTAAGA TT-TGGCGGG--CGGGTGCGGAGATCTACTCGTCTTG------CTGCCGCCCAAGACAAGCCTCGTATGTAAGTTCCCTT TGCTTATTAAANCTGCCACCTACCAACCTGGAGTGGCCTGCCTCTTTCTTCGGTCTCTCCCTG-CCCTCTGCGTACGGGG GCCGGTTTCAGATTACACCCGGGAAGCTCCCGAGGGGGTTGCGAACCAACA----------------------------- ---------------------------------------- >Canis_familiaris ATAT-----GATTGCATCAGTTACAACTACATTGTTATTAA--AGAACCTTAGGTAGGACATT---ATGGT---TGTTGG AAGAGGTTATC-TAGGGGATGTGACCTCCTGTTGACCTGGGGTTTGTAC------CAGGCACTCAGACACTGTT---CAT CTTTCC-ATCTTTGGAATGTATG--------------CTCACAATGGGAATCCTTTTTAAAGGAACAACCTTGAGAGAAC AAGACCATCTGTACCATTCACACCATCTGGACCAAATACATGACCGAACCCAGTTACCACTGCTATAGAAACCT-TAAGA TTTTGGCAGGCAGGTGTGGGGATCTACTCCTCTTGTG--------GCCACCCAGGGCAAATCT----GATGAGTTGCCTC -GCTTATAGAACCTGCAATCTACCAGTGTGGAGTGTCCCGCTTCTTTTTCTGGTCTCTCCTTA-CCCTCCTTCTTTGGGT -CCGATTTCAGATTTCACCTAGGAAGCTGCTGAGG---TTGCAGACCAGTA---GTGGC---ACAGGA-AT-------GC GCTGCCTACTTAAAAGTCCTCTCTCATCCCCATTTCATCC >Felis_catus ATAT-AAAAAATTACATCAATTACAGCTACATTGTTTTTAA--ACAACCTTAGGTAGGACATT---GTGGT---TGTTGG AGGAGATCATT-TAGAAAGTGTAACCTCCTGTTGACTTGTGATCTGGAC-----CCAGGCAATCAGAGACTTTTCATCTC CTTTCC-ATCTTTGGAATGTATGGTCTGCCCACCATTATCACTATGAGAATCATTTTCAAGGACACAACCTTGAGAGAAC AAG-------ATGTGGTTCAGAC-ATCTGGACTGAATACATGACAGAACCCAGTTACCATCTCTCTATAAACTT-AAAGA TTGTGGCAGGCAGGTGTGGAATTCT-CTCCTCTTGTGCCCCCCCCCCCCCCCATGTCAAGTCT----GGGAAGT------ -GCATATTCAACTTGCCACTGACCAATCAGGAGTAACCTGCTTCTTTCTTTGGTCTCTCCTTG-CCCTCTGTGTTTGGGT -CTCATTTCACATTTCACCTGAGAAG-TGCTGAGG---TTGCAGACCAGCA---GTGGC---TCAGAA-AT-------GT GTTGCCTACTTAAAGATCCTTTCTCATCTTCATTCCACCC >Manis_pentadactyla AGATATTA--------------------ACACTGTTACTAG--GTAACCT----GAGGAC-CA---GTGGC---TGTAGG AGGAGGTCATG-GAGAGGATGGGACTCCTGGTTGACCCTCGAGCTGGAC-----TGGAGCAATGGGAGGCTCCT--GTAC CCTTCCTGCCCTTTGAA---------------CTGTTCCTAAAATGAGAGCCCTTTTCAAGGACGCAGCCTTG------- ---------------------ACTATCTGGA-----TATGTGGCTGCACCCAGTTAAGGTTTCTACATAAATTTGTAAGA TTATGGT-GGCAGGTGTGGAGATCTACTCATCTTTCT--------GCCCTGCAGGACAAGCCTTGTATAGAAGTTCTTTT -GCTTGTTGAACCGGCCGCCGGCCCACCTAGAGTGGCCTGCCTCTTCCTTTGGCCTCTCCTTGCCCCCCCGTGTATGGGG -------CCAGATTCCACCTGCGAGGCTCCCAAGA---TCTCAAATCAA-----GGGGC---ATGGGATAT-------GG GCTGCGTACTTAGAGGTCCTCCCTCATCTCCATTCCACCC >Sus_scrofa ATATATTGCAATGATATCAATTACAAATGTATTCTTGTTAA--A-AACCT----TCGAACACT---GTGGC---TGCTGA AAGAGGTCATCAAAGAGGAGATGACAACCAGTTGACCTAGGAGCTGGACCTGGGCAGGGCAACTGGAAGCTCCTTGCCTC CTCCCCTGGCCTTGGAATGTATGTTCTGTCCACCATTCCCCCT-TGGGAGCTGTTTTCAAGGACTCGGCCTCGAGAGAAC AGT-------GTGTTTTTGAGATCATCTGGACTGCGTATGTGACTGAATCCAGTTAAGATCTCTATAGAAACTTTTAAAA TTCTGGCAGGTAGGGGTGGAGATTTATTCATCTTGTG--------ACGTCCTAAGACAAGCCTCATATGTAAGTTCTCTT -GCTTCTTAAACTTGCCACCTGTCCATCTGGAGTGCTCTGCCTCTTTCTTGGGTCTCTCCTTG-CCCTCCACGTATGAGA GCCAGTTTCAGATTTTACCCAAGAAGAACCAAAGA---TTTTGAACCTACA---ATGGC---ATAGAA-AT-------GT ATTGCCTACTTAGAGGTTGTNNNNNNNNNNNNNNNNNNNN >Tursiops_truncatus ATAT---------------ATTACAATTACTTTCTTATTAA--A-AACCT----TAGAAAACT---GTGGC---TGCAGA AGGAGGTCCTC-AAGAGGACATGACTACCAGTTGACCCAAGAGCTGGACCTGGGCAGGGCAATCGGGA--TCCTCACCAC CTCCCTTGGTGTTGGAATGTACATTCTGTCCACCATTCCCACAGTGGGAGCTGCTTTCAAGGGCGCAGCCCTGAAAGAGT AAG-------GTGTTGTTGAAACCATCTGGATGGTATATGTGACTGAACCCAATTAAGACCTCTATATAAACTTTTAAAA TTCTGGCAGGTGAGGGTGGAGAGCTACTCATCTTGTG--------GCTGCCCAGGACAAGTCTTGTATGTAAATTCCCTT -GATTATTAAACTTGCCACCTACCAATCTGGAAAGGTCTGCCTTTTTCTTGGGACTCCCCTTG-CCTGCCATATATGGGG ACCAGTTTCAGATTTTATCCGGGAAGGACCAAAGG---TCTT-GACTTG----------------AGA-AT-------GT GTTGCCTAATTAAAGGTTGTTNNNNNNNNNNNNNNNNNNN >Equus_caballus ATATATTACAGTTA-ATCAACTACAATTACTTAGTTATTAA--ATAACCT----TGGAATGTT----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------GTGGC---AGGGGA-ATTGTGGCAGT GTTGACTACTTAGAGGTCTTCCCTCATCCGCATTTCACCC >Ceratotherium_simum ATATAATACAGTTA-ATCAATTACAATTACTTTGTTATTAG--ATAACCT----TGGGATATC----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------ATGGC---AGGGCA-AT-------GT GTT-CCTACTCAGAGGTCTTCCCTCACCCCCATTCCACCC >Myotis_myotis ATACATTACAATCACATCAATTACAATTATATTATTACTAA--A----------TAGGATAT------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------CTGGC---ATGGGA-AT-------AT CTTGCCTTCTTATAGGTCCTCA-TAACCTCCTTTCCACCC >Rousettus_aegyptiacus ATAT---------------ATTACAATTACACTTTTATTAA--ATAACTT----TAGGACAT------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------GTGGC---ATGGGG-AT-------GT GCCACTCTCTTGGAGGTCCTCCCTCATCC-CATTTCACTC >Condylura_cristata ATATATTTC------AGCAGTTACAATTGCAGTACAATTAA--CTAATCT----------ATT----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------GTTGC---ATGGGA-AT-------GT GTTGCCAACTTAGAGGTCTTAACTCATCCCTCTTCTACCC >Sorex_araneus ATACATTCCAATGACGTCAATTTCAATTATGGTCTAATTAAATTTTGTTC----------ATC----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------GTGAC---ATGGGT-AT-------TT GTTAGCTAATTGGAAGTCCTACCTTATTCCTGTTTT-CCC >Homo_sapiens ATATATTATACTGACATCAATTACAATTACATTACAATTAA--ATAACCT----TGCTATATT----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------GGAGC---ATGGGA-AT-------AT GTTGCCAACTTAT---TCCTGCCTCATCCCTATCCTACCC Dog4_LTR >MER34C_CF -----------------------------------------------------------------TGAAGGGGAGCAGAA TTTGCCACCCCA-AAATATGCCTCTTTGGCATAAGGATTA-----TTTTAGGCTGATTATTTTTAAGAAACTGCAGACAC AGGAGAAGCTCTGAAAACCGAGTAGAAGTTACCCTTTTGTAAGAGACATTTACATTTATAA---GGGAAATCTCCATTTG TAAGGGTGTCTCCCTCTCTGTACCAGGAAGAGGAGGATGACTCTAAATCTCTAGAAACTCTTATCAATGGAGAAG---GC AAGGACTTAAATCTGCATAACAACCTTACCCTTGTTTACTGTGCTTTTCCTGGTAACCTCCCATAACTGACT-CCCCACC CCCAACA----TCTTTTTTGTCTTTAGCTGGAGATGGTATTTAAGGTGATGGCTTGGGCCATTTCGGGG-AGTTACTCAG TTTTCCTGGGTCTCTCCCATGTATACAGGAGGTATACATATGTTATTAAACTTTTGTTTGTTTTTCTCCTGTTAATCTGT CTTATGTCAATTTGATTCTTAGACCAGCCAG--AAGAACCTAGAAGGGTAGAGGAAAATTTTTTTCTCCT---CAACA-- ---------------------------------------------------------------------------- >Canis_familiaris GATAGGCTACCCACTTTGCTAAAGCTT-----CTTGAGTTTAAGGATATTGCTTA---TTAG---TGAAGGGGAGCAAAA TATACCACCCCA-AAATATGCCT-TTTGGCATAAGAATTA-----TTTTAGGCTGATTATATTTAAGAAACACCTGACAT AGGACAAGCTCTGAAAGC--AGTAGATGTTACTCTTTTGTAAAAGACATTGACATTGGTAA---GACAAATCCTTATTTG TGAGG-TGTTTCCCTCTCTGTACCAGGAAGAGAAGGTTGACTTTGAATCTCCTGAAACTCTTATCAATGGAGAAA---GT AAGGAATTAAATTTGAATAACAAACATACCCTTGTTTACTGTGCTTTACCTGATAACCTCCCTTAACTGGCTGCCTCACC CCCAATG----TCTTCTTTGTCTTTAGCTGGCGATGATATTTAAGGTGACAGCTTGGGACATTTTGGGG-AGACACTCAC TTTTCCTGGGTGTTTCCCATGTATACGGGAGGTAT--ATATGTTGTTAAACTT----TTGGTTTTTTCCTGTTAATTTGT CTT-------TTTATTACAGAGATGTCTCAGCCAAGAACCCAGAAGGGTGAAGGGAAAATTATTTTTCCTTCCCCACA-- -TTAG---CCAAAAAAGAAAAAAATAAAA------------------TTCTTAAACGTTGGCTAGATTCCCAGCAA >Felis_catus GCTCAGCTACCCAC-TTGCTAAAGCTT--CCTCTCAAGTTTAAGGATATTGCTTA---TTAG---TGAAGGGAAGCAAAA CATACCGCCCCA-AAATATACCT-TTTGGCATAAGGATTATTTTGTTTTAGGCTGATTATTTTTAAGACACAGCTGACAT GGGAGAAACTCTGAAAGC--AGTAGATACTACTCTTTTGTAAAAGACTTTGACATTC-TAA---GGCAAATCTTCAATTG TAAGGGTGTCTCCCTCTGTA---CAGGAAGAGAAGGATGCCTTTAAATCTCCGGAAACTCATATCATTGGAGAAG---GC AATGACTTAAATCTGTATAACAGCCATACCCTTGTTTACTGTGCTTTCCCTGATTACCTCCCTTAACTGGTTGCCTCACC CCCAACA-------TCTTTGTTTTTAGCTGGAAATGATATTTAAGATGGCAACTTGAGACACTTTGGGG-----AGTTAG TTTTCCTGAGTGTTTCCCATGTATACAGGAAGTAT--ATATGCTATTAAACTT----TTGCTTTTCTCCTGTTAATCTGT CTT-------TTTATTTCAAAGATGTCTCAGCCAAGAACCTAGAA---GAGGAGGAAAATTATTTTTCCTACCCCACA-- -TTAG---CAGCCGCACCCCACAAAA--------------------TTTCTTAAACATTGGCTAGATTCCCAGATA >Manis_pentadactyla GCTGGGCTACCCACTTTCCTAAAACCT--CCTCTCAAGTTTAA---TAGTGGTTA---TTAA---TGAAGGGGAGAAAAA CATACCATACCA-AAATACATCTCTTTGGCATATTGATTA-----TT-----CTGATTATTTTTAAGAAACAGCAGATGC AGAAGAAGCTCTGAAAACCAAGTAGACGTTTCCC-TTTGTAAGAGATATTTACATGTATAA---AGAAAATTTCAATTTG GAAGGGCGTCTCCCTTT--AGACCAGGAAGAGGAGGATGACTCTAAATCTCATGAAACT--TATCAATGGAAAAAAATGT GGCAACTTAAATCTGCATAACAACCTGACCCTTATTTACTGTGCTTTGCCTGATAACCTGCCATAACTGACC------TC CCCAGCAACATCTCCTTTTGTCTTTAGCTG---ATGGTATTTAAGGAGGCAGGTTGAGCCTTTGTGGGGAAGTTACTCAC TTTTCCTGGATCTCTCTGTCGTATACAGGAGGCAT--ACATTTTATTAAAC------TTATTTTCCTTCTGTTAATCT-- --T-------TTTATTATAGGGG-GTCTCAGTCAAGAACCTAGAAGGGTGGAGGGAAAATTA-TTGTCCTCCCCTACG-- -CTAG---AAAAAGAAACAGATAAAAA-------------------TTTCTTAAGCATTGGCTAGAATCCCAA-AA >Sus_scrofa ACTGGGCCACCCAGTCTCCTAAAGCTT--CCTCTCAAGTTTGAGTATATTGCTCA---TTAG---TGAAGGGGAACAAAA CACACCACCCCCAAAATATGCCC-ATTGACA-AAGGATTA-----GCTTAAACTGGTCATTGTTAAGAAAGAGCAGACAC AAGAGAAGCTCTGAAAACGGAGTAGAACTTAACACTTCGTAAGAGGCAAGTGCTATTATAAAATGGGAAATCTCCATTTG TAAGGGTGTCTCCCTCTCTGCACCAGGAAGAGAAAGATAACTCCAAATCTCTAGGCCCT----------AAGAAG---GC AAGGACTTAAATCTGCATAACAACCCGACCCTTGTTTGCTGTGCTTTTCCTGGT-ACCCTCTTCAACTGGTCTCCTGGTG TCCCCCAACAAATTCTTTTGTCTGTAATTGGAGATGTTGCTCCGGGTGGCAGCTTGGGCCATTTCCAGG-AGTTACTCAG TTTTCCTGGATCTC-CGCACGTACACAGGGGGTAT--AGGTGTTATTAAACTTCCGTTTGTTTTTCTCCTTTTATTCTGT TGT-------TTTATCACGGGGACATCTCAGCCAAGAACCTAGAAGGGTGGAGGGAAAATTATTTTTCCCCCACCACA-- -TAAG---CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTTAAAATTCTTTAAACATTGGCTAGATTCCCAGCAA >Tursiops_truncatus ACTGGGCCACTCAGTTTCCTAAAGCTT--CCTCTCAAGTTTAAGGATATTGCTTA---TTAG---TGAAGGGGAGCAAAA CATACCACCCCA-AAATACGGCCCTTTGACATATGG-TTA-----TTTTAAGCTGGTCATTTTTGAGAAACAGCAGACAC AGGAAAAGCTCTGAAACCTGAGTAGAAGTTCCCCTTTTGTAAGAGACAAGTCCATTTATAA---GGGAAATCTCCATTTG TAAGGATGTCTCCCTCTTAGTACCGGGAAGAGAAAGATGATTCTAAATCTCTAGAAACTGTTAACCACAGAGAAG---AC AAGGACTTAAATCTGCATAACAACCTTATCCTTGTTTACTGTGCTTTTCCTGGTCACCTCCCACAGCTGGCCTCCCCGCC CCCCAAC-------ATCTTCTTTTTAATTGGAGATGTTACTTAAGGTGGCAGCTTTGTACATTTCCGGG-----AGTTAG TTTCCCTGGGTCTCTCCCCTGTATACAGTAGGTAT--ACATGTTGTTAAACTT--GTTTGTTTTTCTCTTGTTATTCTGT CTT-------TTTATCACAGGAAGGTCTCAGCCAAGAACCTAGAAGGGTGGAGGGAAAATTATTTTTCCTCCACCACA-- -TTAG---CAAAAAAAAAAAAAAAAAAAAAAGATTAAAA-------TTTCTTAAACATTGGCTAGATTCCCAGCAA >Equus_caballus GATGGGCCACCCACTTTCCTAAGGCTT--CCTCTCAAGTTTAAGGATATTGATTA---TTAG------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------CAAAAAACAAAAATAAAAATAAAAAA------------TTTCTTCAATCTTGGCTAGATTCCCAGCAA >Tapirus_indicus GCTGGGCCACCGACTTTCCTAAAGCTT--CCTCTCAAGTTTAAGGATGTTACTTA---TTAG------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------CAAAAAAAAAAAAAAGATAAAAAA--------------TTTCTTCAACATTGGCTAGATTCCCAGCAA >Myotis_myotis GCTG--------ACTTTCCTAAGGCTC--CCTCTCAAGTTTAAGATTATTGCTTA---CTAG------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------CCAAAAAATAAGATAAAAAT------------------TTTATTCAACATTGGATAGATTCCCAGCAA >Rousettus_aegyptiacus ACTGGGCCACCCACTTTCCTAAAACTT--CCTCTCCAGTTTAAAGATATTGCTTA---TCAG------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------CAAAAAAAAA--------------------------------TTAAACATTGGCTAGATTCCCAGCAA >Condylura_cristata GTTAGACCACCCAG-TTCCTAAAGCTT----CCTCAAGTTTAAGGATATTGCTGA---AAAA------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------CAACAACAAAGTATAAATAAAAATAAAAA---------GTTCTTAACCATTGGCTCCATTCCCAGCAA >Erinaceus_europaeus GCTGGGCAAGCCAGTTTCCTAAAGTTTTGTCTTTCAAGCTGAAGGGTAGTTCTCA---TTAA------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------CACTCAACAACAAAAAGAGTTCAATTTTTTTT------TTTCTGAAACATTGGCTAGATTCCCAGCAA >Homo_sapiens ------CCACCCACTTTCC---AGCTT--CCTCTGAAGTTTAAGGATATTGCTCA---TTAA------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------GAAAAAATAAAATAATATAAAAA---------------TTTCTTGAATGTTGGCTAGATTCTCAGCAA Dog5_LTR >MER34C_CF ------------------------------------------------------------------TGTTGAGGAG---A AAAAAATTTTCCTCTACCCTTCTAGGTTCTTCTGGCTG-----GT--CTAAGAATCAAATTGACATAAGACAGATTAACA GGAGAAAAACAAACAA-AAGTTTAATAACATATGTATACCTCCTGTATACATGGGAGAGACCCAGGAAAACTGAGTAACT CCCCGAAATGGCCCAAGCCATCACCTT----------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------AAATACCATCTCCAGCTAAAGACAAAA--AAGATG TTGGGGGT------GGGGAGTCAGTTATGGGAGGTTACCAGGAAAAGCACAGTAAACAAGGGTAAGGTTGTTATGCAGAT TTAAGTCCTTGCCTTCTCCATTGATAAGAGTTTCTAGAGATTTAGAGTCATCCTCCTCTTCCTGGTACAGAGAGGGAGAC ACCCTTACAAATGGAGATTTCCCTTATAAATGTAAATGTCTCTTACAAAAGGGTAACTTCTACTCGGTTTTCAGAG---- CTTCTCCTGTGTCTGCAGTTTCTTAAAAATAATCAGCCTAAAATAATCCTTATGCCAAAGAGGCATATTTT-GGGGTGGC AAATTCTGCTCCCCTTCA------------------------------------------------------------ >Canis_familiaris GTAGTGTGAAAAAA-CTTTAGTGAAATTGGAAACTTGACAAAAA-----TATTTTT---GCCT---TGTAAGGGAGG-AA AATAATTTTCCCTCTACCCATCTTAGTTCT--TGGCTAAGATACTCCCTGTAAT----------AAAAGACAGATTAAGA AGAGAAAAATAAATGG-AAGTTTAATAGC--ATGTATACCTCCCATATACATAACAGATACCCAGGAAAAC----TAACT CCTTGAAAT-GCTCAAGCCACCACTCT----------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------GAATACCATTTCCAGCTAAAGACAAAAGAAATGTT CTAGAAGA----GGAGGAGGCCAGTTAAAGAAGGTCACCAGGAAAA---------------------------------- ---------------------------TAGTTTCTAGAGATTTAGAGGCATCCTTTTCTTCCTGATACAGAGAGGGAGAC ACCCTTACAAATAGAGAGTTCCTTTATAAATGTACATTTCCTTTACAAAA-GGTAACTTCCACTTGGTTTT-GGAA---- CTTTTCCTGTGTCTGCTGTTTCTTAAAAATAATCAGCCGAGAATAATTCTTATGCCAAAGAGGCATATTTTGGGGGTGAC AA-TTCTGCT-CCTTGAA---GCCT---CCTACACCTATGCTGAATTCTAAACCT------ATTTTATAAATTATTTT >Felis_catus GTGATGTGAAATAA-CCTTAATAAAATTGGAAAGTTGACAAAAA-----TATTTTA---GCTT---TGTAAGAGAGGAAA AATAATTTTTCCTGTACCCTTCTTGGTTCT--TGGCTGAGACACTCCCTGTAATT-----AAAAAAAAAACAGATTAACA GGAGAAAAACAAACAG-ACGTTTAATA----ACGTATATCTCCCATATACATAGGAGATACCCAGGAAAACCGAGTAACT CCT--GAATGACTCAAATCACTATTTT----------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------AAATACCATTTCCAGCTAAAGACAACAG-AAAATG TTATGGGA--GAGGAGTAGGCCAGTTATGGGAGGTCACTAGGACAAGCACAGTAAACAAGG------TTGTTATGCAGAT TTAA-----TGACTTCTCCTTTGACAACAGTT-ATAGAGATTTAGAGGCATCCTTTTCTTCCAGGTGCAGAGAGGGAGTC ACCCTT-CGAATAGAGATTTCCCTTATAAATGTACATTTCCTTTACCAAAGGGTAACTTCCACTCAGTTTT-GGAA---- CTTTTCCTATGTCTGCTGTTTCTTAAAAATAATCAGCCTAAAATAAACTTTATGCCAAAGAGGCATATTTT-GGGGTGAC AG-TTTTGCT-CCCTTCA---GCCT---CCTACACTGATGCTGAATTTTAAACCTAAGACTATTTTATAAATTATTTT >Manis_pentadactyla GTTGTGTGGAATCATTTTTAATAAAATCGTAAACTTGACAAAAA-----TATTTTA---GCAT---TGCAGGGGAGGAAA AATAATTTTCCCTCTACCCTTTTAGGTTCC--TAGCTGAGACACCCCTCCAACT----------AGAAGATAGATTAACA GGAGAAAAGCAG-----AAGTTTAATAAC--ATGTAAACCTCCTGTATCCTTGGGAGAGACCCAGGAAAACTGAGTGACT CCCTGAAGTGGCCCATGCCATCCCCTT----------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------AAATTCCATCTCTAGCTAAAGGCAAAAGAAAGATA CTGGGGCCAGTTGGAGGTGGCCAGTTAGGGAAGGCGACCAGGAAAAGCACAGTAAATGAGGATATGCTTGTTACACAGAT CTAAGTCCCTGCCTTGGCCATTAAT--GAGTTCCTAGAGT--TTCAGTCATCTTCCTCCTC------TACAGAGTGAGAC GCCCTTATCCATGCAGATTTCCCTTATCAATGTAAATTTATCTTCCAAGAGGGTAACTTCTCCTTGGTTTGCAGAG---- CTTTTCCCA--TCTGCTGTTTCTTAAAAATAATCAGCCTAAAATAATCCTTATACCAAAGAGCCATATTTT-GAGGTGAC ATATTCCACTTTCCTTCA---GCCT---CCTACACTGCTGCTGAATTCTAAACCTAAGTCCATTTTATAAATTATTTT >Myotis_myotis GTGATGTGAAATCA-CCT---CAGAATTGGAAACATGACAAAAA-----TATTTTA---ATTT---TCTAGGGGAGG-AA AATAATTTTCACTCTACCCTTCTTGGTTTT--TAACTGAGATACCCCCTGTAAT----------AAAAGACAAATAAAGA GGAGAAAAATAAAAGGGAAGTTTAATA-------------CCATGTGTACCTGGAAGATACCCAGGAAAATTGAATAAAT CCCCTAAATAGCCCAAGCCGTCACCTT----------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------AAATACTATTTCCAGGTAAAGACAA----AAGATG TTGGAGGT--GGAAGGGAGGTCAGTTATGGGAGACTACCAGGAAGAGCATGATAAACAAGGGCGTGTTTGTTATGCAAAT TTAAGTTCTTGTTTTCTCCATTGATGAGAGTTTCTAGAGA--TTTAGTAATTCTTCTCTTTCTGGTACAGTGAGAGAG-- ------ACAAATGGAGATTTTCCTTGCAAATGTAAATGTCTGTTATAAAAGGGAAACTTCTACTTGGTTTTCAGAGTTAC ATATTCCTATGTCTGAT-TTCCTTAAAACTAATTAGCTTAAAATAATCCTTATCCCAAACAGGCCTATTTT-AGGGTAAC AAATTCTGCCCCTCTTTA---GCCC---CCTAAACCATTGGTGAACTTTAAACATAAGTCCACTTTATAAATTATTTT >Rousettus_aegyptiacus GTGGCATGAAATCAACTT----AAAATTGGAAACTTGCTGAAAA-----TATTTTA---GTCA---CGTAGGGGAGG-AA AATAGTTTTCCCTCTACCCTTCTAGACTCT--TGACTGAGATGCCCTCTGAAAT--------------AAAAGATTAACA GGAGAAAAACAAACAG-AAGTTTAATAAC--ATGTGTACCTCTTATATACATGGGAGAGACCCAGGAAAACTGAATACTT CCCC-AAATAGCCCAAACCATCACCTTTAAAACTATCTCCAAAAAGCAACCCTCATACACTGCAGGTGGGACTGCAAATT GGTACAGCCACTATGGAAAACAGTATGGAGGTTCCTCAAAAATCTATTAATCTACCATATCATCCAGCAATCCTTCTATT GGGTATTTACCCCAAACACTTGAAAACCCATATCCAAAAAGATATTTGCACACCAATGTTTATAGCAGCATTATTCACAG TGGCCAGGACATGGAAACAACCAAAGTACCCTATGACAGATGATTGGCTAAAGAAGCTGTAGTACATATATACAATGGAA TATTACTCGGCCACAAGAAGAGATGAAATACTGCCATTTGTGACAACACGGATGGACCTCAAGAGAATCATGCTAAGTAA AGTAAGCCAGACAGAAAAAGTTGAAAATCATATGATATCATTTCTATGTGGGATATAAACTTAAAAGCAACAAATGAACA GGACAAACAAACAGAGACTCATGGACATGGACAATAGAATAGTGATTACCAGAAGGCAGGGGGTGGGGGAAGAGAGAGTA AGTAGATAGTTAAAGGAGGTCAAATATAAGCAGGTTGAGGGAGGGTGAAGTGGATAAAGGGGATCAAATATATGGCAGCT GAAGGAAACTGGACTTTGGGTGGTAAACACAAAATAGAATATACAGATGTCAAATGATAATGTACACCTGAAAATTATGT AATTGTATTAACCAATGTTACCCCCAATAAACTTAATTAAAAAAAAAAAACTATCTCCATCTAAAAACAAAAG-AATATG TTGAGGGTTTGGTGGGGAGGCTAATTAGGGGAGGTTACCAGGAAAAGCACAGTAAACAAGATCATGGTTATTATGCAAAT TTAAGTTCTTGCTTTCTCCATTGATAAGAGTTCTAACAGA--TATAGTCATCCTTCTCTTCCTGATACAGAGAGGAAG-- ------ACAAACGGAGATTTCCCTTATAAATGTAAATGTTTCTTATAAAAAGGTAACTTCTGCTCAGTTTTCAGAA---C TTTTTCTTATGTCTGATGTTCCCTAAAAATAATTAGCCTAAA-TAATCCTTATGCCAAACAGACATATTTT--GGGTGAC AAATTCCACTCTCCTTCA---GCCT---CCTACACCAATGTCAATTTCTAAACCT--GTCTATTTTATAAATTATTTT >Sus_scrofa GTGATGCGAATTCC-CCTAAATAAAATTGGAAATTTGACAAAATTCTGTTATAATA------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------GCCA---CTTACAGCAATGCTGAGTTCTAAACCTAAGTCCATTTTGTAAATTACTTT >Bos_taurus GTGATGTGAAATCC-TCTAAATAAAGTTGGAAATTTGACAAAAA-----CATATTG------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------GCCT---CTTACAGCAATGCTGAGTTCTAAACCTAAGTCCATTTTGTAAATTATTTA >Equus_caballus GTGGTGTGAAATCA-CCTTAATAAAATTTGCAGCTTGACACAAA-----TAGCTTA------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------GTCT---CTCACACCAGTGCTGAAATCTAAACGTAGGTCCGTTTTGTACGTTATCTT >Ceratotherium_simum GTGGTGTGAAATCA-CCTTAACAAAATTGGAAGCTTGACAAAAA-----AGCCTTA------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------GTCT---CCTACACCAATGGTGAATTCTAAACCTGAGTCCATTGTGTAAGCTTTTTT >Condylura_cristata GTGGTTTAAAATCA-CTCTACTAAAATAGAAAATACAGCAAAAA-----TATGCT------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------GCCG---TCTATACCAATGCTGACTTATACCCATAAGTCTATTTTGTAAATTGTTTT >Erinaceus_europaeus GTGGCATGAAATCG-CTTTAATATTGTAAAATACATAATAGGAA-----TATTTTA------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------GTCT---T--GCA---ATGCTGACTTCTCAACTGAGTCCCATTTCTGAAACTGCTTT >Homo_sapiens GTGGTGTAAAATTA-CCTTATTAAAATCAGAAACTCTATA-AAA-----TATTTTA------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------GCCT---TTTACACCAATGCTAAATTCTAAACCTAATTTCATGTTGTAAATTATTTT Dog6_LTR >MER57LA ------------------------------------------------------------------TGTGTTAAAAGA-T AAACTGAGGCATATTAAAAATTTTAAGAGTTTATTTGAGCAAAAAT-CGATTCAAAT-CAGGCAGCACCAAACCAGGAAG TGGTTAGGAGCGCTCCACCGACAGGAGCTAGGGGAAAGACTTTTATAGAGAAGAGGCAGA-AGCAAAGCAAGGAAATTAT TTGATTGGCTATAGCTTAAGCAGTTGCCTTATTTGGGAAAGCCTAGTTGGCTGTTTGTGATTGGTTGTCCTTAG-GTTTT GA-TTTCTTAACCTTGAGGCATTTACAGGCTTAGGTTTTGGTTTGCTTACGTAGGCTGCTAAGGCATTAGAACCACCTCA GTCTAATGGCCTCCTTGTTTAATTAATTTAACA----------------------------------------------- ------------------ >Canis_familiaris CTTAT--TAATATCAAATTCTTTGCCAAGAGTGGGGCT----TTGGTTAGTGATTT---AGGG-----TGTTAAGAGA-T AAACTGAGGAGTATTAAAAATTTTAAGAGTTTATTTGAGCAAAAATACAATTCTGAT-GGGGCAGCACCAAACT-GGAAG TGGTTATGAGCACTTGGCGGACAGGAACCAGAGGAGAGCCTTACATAGGGAATGTGCAGA-AGCAAAGAAAGGAAATTAT TTG-TTGGCTATAGTTC---------------------AAAGCCTATTGGCTATATAAGATTGGTTGTTCTTAGTGTTTT GATTTTTGTAATCTTGAAGCATTTACCAGCTTAGACTTTGGTTTGTTTATGTAGGCCTTCAAAGCACTAGAGCCACCTCA GACTAATGACCTCTTTATTTAATTAAATA------AAGG---GCATATAGAATTTTAATAGAGGCCACAATGGATGGGAA AGAAAACGAGGAAAATAA >Felis_catus CATAT--TGATATCAAGTTCTTTGCCAAGAGTACGGCT----CTTGTTGGTGAGTT---AAGG-----TGTTAAGAGA-T AAACTGAGGCGTGTTAAAAATTTTAAGAGTTTATTTGAGCAAAAAA-CAATTCTAATCGGGGCACTGCCAAACT-GGAAG TGGTTAGGAGCAGTTGGCCAAC----------------------ACAGGGAATGTGCAGA-AGCAAAGAGAGGAGAGTAT TTAATTAGCTATAGCCA-----------------------------------------------TTGTTCTCCGTGTTTT GA-TTTTGTAATCTTGAAGCATTTACCGGCTTAGATTTCAGTTTGTTTACATAGACCTTCAAAGCGTTAGAGCCACCATA GACTAATGGTCTCCTTGCTTAATTAAATA------AAGG---GCATATAGAATTTTGATACAGGCCACAATGGATGGGAA AGGAAACAAGGAGGAAAA >Manis_pentadactyla TATATACTAATATTGAATTCTTTGTTAAGAGTTGGGCT----TTGGCTGGTTAGTT---AAGG-----TGTTAAAAGA-T AAATGGAGGCATATTAAAAATTTT--GAGTTTATTCGAACAAAAAG-CAATTTTACT-CACTCAGGGCTAAACC-GGAAG TGGTAAGAAATGCTCTGCCTGCAGGAACCAGGGGAGAGA--TATATAGCAAAAGTACAGA-AGCAAAGAAAGG--ATTAT TTGATTGGCTATAGCTT---------------------AAACCCTGTTGGC--TCTGTCTTTGGATGTCTTTAGTATTCT GA-TTTTGTAAATTTGAGGCATTTACCAGATTAGATTTTGGCTTGTTTACATAGGCCTCCATGGCTTTACAGCCACCTCA GTCTAATGGCTTCCTTGCTTAATTAAGCA------AAAG---GCATACAGAATTTTAATAGAGGTCATGATGAATGGGGA AGAAAACAAGGAAGAAAA >Condylura_cristata GATAT--TTATAGCTAACTCTTGGCCAAGAGTAAGGCT----TTGGTGGGTGATGT---ATGG-----TGCTAAGAGACT AAATTGAGGCATAGGAACTATTTT--GAGTTTATTTGAGCAAAAAT-TGATTCTCAT-GGGGGAGCGCCCAACT-GAAAG CAATTAGGAGC------------------CAAGGAAAGGGGTATATGGAGGCGACACAGATAGTTAAGAAAGGAAATA-- TTGATTGGCTATAGCTT---------------------AAACC-------CTGTTTGTGATTGGTTGTCTTTAATGCTTT GA-TTTTGCACCCTGGAGATATTTCCAGACTTAGATTTTGGTTTGCCTG-ATAGGCCCCT-TGGCATTAGAGACACCTCA GCCTAATGGCCTCCTCATTTAAATAATTCAAC---AAAG---GCATATAGAATTTTAATAGAGGTCACAATGGATGGGGA AGAGAACCAGAAGGAAAG >Solenodon_paradoxus GCTAT--TAATATCAAATTCTTTGCAAATTGTAAGACT----TTCGTTGGTGATTT---AGGG-----TGTTAAAAGC-T AAACAAAGGCTTACAAAATTTTTT--AAGTTTATTTGAGCCAAAAT-CTGTTCTAATAG----------------GGCAG TGGTTTGTAGCCTCCTGGAGGTCAGGAGTCCAGGGAAGACTTATAGGGAGAAAATGCACA-AACAAAGAAGGGAAATGAC TCAATTGGCTATAGCTG--------------------GAAGTC----TGGTTGTCTGTGATGGGTT-CTCTCAGCATTTA GATTTCCCTGGAC--GAGGCTTGCAGAGG-TTAGAGTTTGGCTTGCTT--GTAGCCTCCTGTGGCATGAGGGCCATTTGG CTCTCAGGGCCTCCTTGTTTCATCACTTTAAC---AAAG---GCATGTAG-ATTTCAACAGAGGCCACAATGAATGGGGA AGAAACCTAG-----AAG >Sus_scrofa CGTAC--TGATATTCAATTCTTTGCCAACAGTAGGGCT----TTGATTGTTGATTT------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------CAGG---GGATATAGAATTTTAATAGGGGCCACAATTGATGGAGA AGAAAATGAGGAGGAAAG >Tursiops_truncatus CATAT--TGATATCAAATTCTTTGCCAAGAGAAGGGCTTTGGTTGGTTGGTGATTT------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------AAGG---GTATACAGAATTTTAGTGGGGGCCACAAAGGATAG--- AGAACGCAAGGAGGAAAG >Equus_caballus CATAT--TGATATCCACTTCTTTGCCAAGAGTAGGGCT----ATGGTTGGTGATTT------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------CGGG---GCGTATAGAATTTTAGTGGAGGACGCGATGGATGGGGA AGAAAACAAGGAGGAAAG >Tapirus_indicus CCTGT--TGGTATCAAATTCTTTGCCAAGTGTATG-CT----TTGGTTGGTGGCTT------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------AAAG---GCATGTAGAATTGTAGTGCGGGCCACAATGGATGGGGA AGAAAATAAGGAGGAAAG >Myotis_myotis TATAC--------CAACTTCTTTGCTAAGAATAGGGCT----TTGGCTGGTGATCG------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------AAGG---GCACACAGAACTTTAGCGGGGGTTGCAATGGCTGGGAA AA-----CAGGAGGAGAA >Rousettus_aegyptiacus TATGT--TGATAACAAATTCCTTGCCAAGAGCAGGGCA----CTGGTGGATGATTT------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------AAGG---GCAGATGGAATTTTAGTGGGGACCGCAATGGATAGGGG GTAGAATCGGAAGGGAAG >Homo_sapiens AATAT--TGATATGACGTTTTTTGCCAAGAGCAGAACT----TTGGTTGGTGATTT------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------GAGC---GCAGGCAGAATTTAAATTCAGGCTACAATGGATGGGGA GGAAAATGAGGAAGAAAG Dog7_LTR >MER57LA ---------------------------------------------------------------------------TGTTA AATTAATTAAACAAGGAGGCCATTAGACTGAGGTGGTTCTAATGCCTTAGCAGCCTACGTAAGCAAACCAAAACCTAAGC CTGTAAATGCCTCAAGGTTAAGAAATCAAAA-CCT-AAGGACAACCAATCACAAACAGCCAACTAGGCTTTCCCAAATAA GGCAACTGCTTAAGCTATAGCCAATCAAATAA-TTTCCTTGCTTTGCTTCTGCCTCTTCTCTATAAAAGTCTTTCCCCTA GCTCCTGTCGGTGGAGCGCTCCTAACCACTTCCTGGTTTGGTGCTGCCTGATTTGAATCGATTTTTGCTCAAATAAACTC TTAA-AATTTTTAA-TAT-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------GCCTCAGTTTATCTTTTAACACA--------------------------------------------- -------------------------- >Canis_familiaris GCTCTGTGCAGAGTTGCTAATAAAACTGCAGCACTGATTG------GGGTGGT-------C--TT---CATC---TGTTA GATGAATTAAACAAGGAGGCCATCACACTGAGGTGGCTCGAAGGCCAT-GGGGCCCATGTAAGCAAACCCAAACCTAAGC CTGTAAGTGCCTCAAGGTCATACCATCAACA-CGTGAAGGACAACCATCCACAAACAGCCAACTAGGCT----------- ---------TTCAGCGAGAACCGGAC-AATAACTTTCCTTACTCTGCTTCCACCTTTTTTCTAGAAAAGTCTCGGCCTGA GCTTGGGTCGGTGGAATGCGCCTCACCGC-TTCTGGTGTGGTGTGGTCTGATGTGAGTAGAGTTTTTCTCAAAGAAACCC TTAAGAAATGTTAA-TAT-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------GCCTCAGTTTATCTTTCAAGGCA----TTT-----AAAAAACAAGGCCTCTTCTAGAAGGTGGCACGA GGCCCA------CGGCCCTTTCCCTG >Felis_catus GCTCTGTGCACAGTTGCTAAGAAAACGGCACCGCAGACTG------GGGTGGT-------C-TTT---CGTT---T-TTA AATTAATTCAGCAAGAAGGCCGTCACACTGAGGTGGTTCTAATGCCACGGACACCTTTGTAAGCAAACCCAAACCTAAGC CTGCAAGTGCCTCAAGGTTACAACATCAACG-CATCAAGGACAACCACTCACAAACAGCCAGCTAGGCT----------- ---------CTAAGCTATAGCCGGCC-AATAA-TTTCCTTACTTTGCTTCCACCTTTTCTCTAGAAAAGTC-TCAGCCGA GTGCCTGCCCGTGGAACGCTCCTAAACAC-TCCCAGTTTGGCACGGTCTGATAGGAATAGAATTTTGCTCAAATAAA--C TTAC-AGTTTTTAAATATGCCTCAGTTTATCTTTAAATTTTTTTTAATGTTTATTTTATCTTTGAGAGAGAGAGAGACAC GGAGTGCAAGTGGGGGAGAGGCAGAGAGAGAGGGAAACACAGAATCCGAAGCAGGCCCCAGGCGCTGAGCTGTCAGCACA GAACCTGACTCGGGGCTCGAACTCATGAACCACGAGATCATGTCCTGGGCCAAAGTCAGACGCTTAACTGGCTGAGCCAC CCAGGCGCCCCAACCTCAGTTTATCTTTTAA--TG---GGTT---CAAAGCAACAGGGCCTCTCCTGGGAGATGGCATGA GGCACA-----GAACCCTTTGCCCTG >Manis_pentadactyla GCTCCACAGGCAGCTGCTCAGAAAAC-----CGCCGATTG------GAGTGGC-------C-TTT---TGTT---TGTTA AATTAATTAAGCAAAGGGTCCATTAGACT--GACGGCTCTAATGCC-CAATAGCCTCCCTCAGCAAACCCAAATCTAAGC CTATGAATACCTCAAGGTTCTGAAATCAAAGCCCCTAAGTACGGCCNNNNNNNNNNNNNNNNNNNNNNN----------- ---------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNN-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------NNNNNNNNNNNNNNNNNNNNNNN---NNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNN >Myotis_myotis CTTCCAAAGGAAGTTGCTAAGAAAATGGCAGTGCTGATTG------GTATTGT-------CTTTT---TATT---TGTTA AACTAATTAAACAAGAAGGCCATTAGAGTGAGATGGCTGCAATGCTTTGAGGGCCTACATAGGCAAACCAAAATCTAAGC CTGTAA------CAAGATTACAAAATCAAAA-CCCCAAGGATAACCCATCACAAATAGCCAACCAGGCT----------- ---------TTAAGCTATAGCAAGTT-AATAA-TTTTCTTACTTTGCTTCTGCCTTTTCTCTGTAGAAGTC-TCTTCCAA GCTCTGGTTGGTGAAGCACTTCTATCCAC-TTCCAGTTTGGTGCTGCCTGATCTAACTTTATTTTTTCTTACATGAACTC TTAA-CATTTTTAA-TAT-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------GCCTTGGTTTATCTTTTAA--CA---TGTT---C-AAACCACAAGGCCTCTCCTAGGAAGTGGCATGA GGCAAG-----TTGCCCTTTTCCCTG >Rousettus_aegyptiacus GCTCTAAGGAAAGCTGCTAAGAAAACTGCAGTGCTGATTG------GGATGG--------CTTTT---TATT---TGTTA AACTAATCAAACGAGGAGCCCACTAGAAT-AGGTAGCTCTAATGCTGTCAGGGTGTACGTGAGCAAGCCAAAATCCAAGC CTGCAAATGCCTCAAGGTTATGAAATTAAAA-CCCTAAAGGCTACCAATAGCAAATAGCCTACTAGGCT----------- ---------TTAAGCTACAACCAGTC-AATCA-TTTCCTTACTTTGCTTCTGCTTTTTCTCTGTAAAAGTC-TCTCCCCA GCTCCTGTTGGTAGAGCACTCCTAACCAG-TTCTGATTCGGTGCTGCCAGGTTCAAACTTATTTTTGCTAAAATGCTTTC TTAA-AATTTTCAG-TAT-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------GCCTTAGTTTATCTTTTAA--AA---TGTT---C-AAATGACAAGGCCTCTCCTAGGAGGTGGCATGA GGCACA-----CTGCTCTTTTCCCTG >Sus_scrofa GCTCCGTGGAAGGGTGCTGGGAAAACGGCAGTGCTGATGG------GGGCGGC-------C-TCT--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------GGTT---C-AGATAATAAGGCCTCTCTTAGG-GGTGGCACGA GGCACA------CCTGCCATCGCCTG >Bos_taurus GCTCCGTGGAGTGTTGCTGAGAAAATGGTGGGGCAGCTTGGTGGCAGGGTGGTGGGGGAGC-TTT--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------TGTT---C-AAATAACAAGGCCTGTCTTAGAAGGTGGCTCAA GGCCCA------CTGGCCTTTCTCCG >Equus_caballus GCTCCGTGGAAAGTTGCTAAGAAAACTGCAGTGCTGGTTG------GGGTGGC-------C-TTT--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------CGTG---C-AGATAAAAAGGCCTCTCCCAGGATGTGTCATGA GGCCCACCTCCTGGCCCCTTTCCCTC >Ceratotherium_simum GCTCCGTGGAAAGTTGCTAAGAAAACTGCAGTGCTGG-TG------GGGTGGC-------C-TTT--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------CCTT---G-AAATAACAAGGCCTCTCCTAGTAGGTGGCATGA AGCACA---CCTGGCCCCTTTCCCTG >Condylura_cristata GGCCGGTGGAAAGCTGCTAAGGACTCTGCAGAGTC-CTTG------GGGTGGG-------C-TTT--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------GTT---C-ACCTAGCAAGGCCTCT-GTAGGAGGTGGCAAGA GGCACA-----TTGTCCCTTTCCTTG >Erinaceus_europaeus GCTCAATGGAAAGTGAATAAGAAAACTGCAGTAATGATTG------AGGTGGG-------C-TTT--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------GCTT---C-AAAGAGCA------CTCCTAGGAGCTGGCTTGA GGCATG------------CTCCCCTA >Homo_sapiens GCTCTGTGGAAGGCCACTAAGAAAACTGCCATGCAGTTCG------GGGTGGC-------C-TTA--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------AATT---C-AAATAACAAAGCCTATCTCGGGAGGTGGCGTGA GGCATG----------------CCTG Dog8_LTR >MER34C_CF ----------------------------------------------------------------------TGTTG---AG GAGAAAAAAATTTTCCTCTACCCTT-CTAGGTTCTTCTGGCTGGT--CTAAGAATCAAATTGA----CATAAGACAGATT AACAGGAGAAAAACAAACAAAAGTTTAATAACATATGTATACCTCCTGTATACATGGGAGAG------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------ACCCAGGAAAAC-TGAGTAACTCCCCG-AAATGGCCCAAGCCATCACCTTAAATA CC--ATCTCCAGCTAAAG--ACAAAAAAGATG-TT---------GGGGGTGGGGAGTCAGT-----TATGGGAGG----- TTACCAGG-AAAAGCACAGTAAACAAGGGTAAGGTTGTTATGCAGATTTAAGTC-CTTGCCTTCTCCATTGATAAGAGTT TCTAGAGATTTAGAGTCATCCTCCTCTTCCTGGTACAGAGAGGGAGACACCCTTACAAATGGAGATTTCCCTTATAAATG TAAATGTCTCTTACAAAAGGGTAACTTCTACT-CGGTTTTCAGAGCTTCTCCTGTGTCTGCAGTTTCT---TAAAAATAA TCAGCCTAAAATAATCCTTATGCCAAAGAGGCATATTTTGGGGTGGCAAATTCTGCTCCCCTTCA--------------- -------------------------------------------------------------- >Canis_familiaris TTATCTTACCCGTCCAAAACCTAGCCATCTTTGAAATCAGCCTGG---------CTCG--------T---TGCAGGGGAG GAAAAAGAATTTTCCCTCTGCCCTT-CTTGGTTCT--TGACTGA-------GAGCTCCTGTAA----TAAGAGATAGATG AGCAGGAGAA----AAACAGAAGTTGAGTAAC--AGGTACACCTGCT---TCCGTGAGAGCG------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------ATCCAGGAGAACTTGAGGAACTCCCTGAAAATGGCCCAAGCCGTCACCTTAAATA TG--TTCTCCAGCTACTGACACAAGAAAGATGATT---------GGGGCTGGGAG------------------------- ---------AGAAGACCTGGAAAC-AGGATAAGATTGTTATGCAGATTTAAGTTGGGCTTTGTCTCC--CGATAAGAGTT TCTTGTGATTTAGTGTCACCCTCCTCTTCCTGGTGCTGAGAG-GAGACACCCTTTCAAGTGGAGACTTACCTTGTAAATG TAAATTTCCCTTC------AGTAACTTCTACG-TGGTTTTCAGAGCTTTTCCCCTGCTTGCTGTTTTTTTTTAAAAATAA TGAGATCAAGATAATCCTTATGCCAGAGAGGCAGATTTGGGGGTTGCAGATCCTGCTCCCC-------TCCT---CAT-- --TAGCCAGGTCTCACAAATTAGGGAGTGAGTTCCAGCCCTGGACAG----GGTTG-CAGTT >Felis_catus TTATTTTACCCTTTCAAAACCCATCCATCCTTGAGATCAGCCTGG---------CTGA--------T---TGTAGGGGAG GAAAAATAATTTTCCCCCTGCCCTT-CATGGTTCT--TGGCTGA-------GACCTCCTGTAA----TAAAAGACAGATT AACAGGAGAAAAACAAAC--AAGTTTAGTAAC--ATGTCCACCTCCTGCATGCATGAGAG-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------ATCCAGGAAAACTTGAGGAACTTCACG-AAATGGCCCATGCCATCACC------- ----TTTTTCAGCTTAAGACACAAGAAAGATGGTT---------GGGGCTGGGGTGTGTGTGTGTGTGGGGGGGGGGGGT TAGGTGGG-GAAAGACCTGGAAAC-AGGGTAAGGTTGTTATGCAGGTTTAAGTT----TGTGTCTCCTTTGATAAGAATA TCTTGTGATTTAGTGTCACCTTTATCTTCCTGGTGCTGAGAG-CAAACACCCTTCCAAATGGAGATTTCCCTCGTAAATG TAAATTTCCCTTC------GGTAACTTCTATTCCGGTTTTCAGCTCTTCTCCTGTGCCTGCTGTTTTA-AAAAAAAATAA TGAGATCAAGATAATCCTTATGCCGAAGAGGCAAGTTTCGGGGTGGCAGATTCTGCTCGGT-------CCCT---CAT-- --TAGCCAAGTCTCACAACTTAGGAGGTGAGTTCCAGCCCTGGACAG----GGTTG-CACTT >Manis_pentadactyla TTATTTTACCCTTCCAAAACCCATCCATC-TTGAGATCAGTGTGGCTGTCTTATCTGA-----TCCT---TGTAGGGGAT GAAAAATGATTTTCCCTCTGCCCTT-TTAGGTTCT--TGGCTGATACCCCCACCCCCTTGTAA----TATA----AGATT AACAAGAGAA----AAATGGAAGTTTAATAAC--ATGTATACCTGCCATATACATGGGAGAG------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------ACCCAGGAAAAC-TGCATAACCCTCTG-AAATGGCCCAAGCCATTACCTTAAGTA CC--TTCTTCAGCTAAAGACACAAGAAAGAT--TT---------GGGGGTGGGGGTGGCGA-----TGTGGGGGTATCAC TTGCCAGGAAAAAGCCTGGTAAGCAAGGGTAAGGCTGTTAAGCAGATTTAAGTTGGGTCCCTTCTCCACTGATAAGAATA TCTTGTGATTTAGAGTCACCCTTCTCTTTCTGCTGCTGAGAG----ACATACTTACAAATGGAGATTTCCCTTATAA--- ----------------TAGGGTAACTTCT----CAGTGTTCAGAGCTCCTCCTGTGACTGCTCTTTTT---AAAAAGTAA CTAGCTCACAATAATCCTTCTGCC--AGAGACATATTTTGGGGTGGCATGTTCTGCTCCCTGTCA---CTCT---CAT-- --CAGTCAAGACTGACCAATGAGGAATCAAGCTCTAACCCTGGACAG----GGCTG-CACCT >Condylura_cristata TTTTCTTACTCTCTCAAAGCTCATCCTTC----AGATCAGCTT-----TCTTATCTGA-----CTTT---CGTAGGAGTG GAAAAATAACTTTCTCTTTACCTTT-TTAGGTTAA--TGGTTTAC------ATACCCATGCAA----TGAAAGACAGATA AACAGGAGAAAAACAAACCAAAGTTCAATAATGTGTGTACTGCTGGTACGT----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------ACCCTGGAAAAC-TGAGTAACTCCCCG-CAGTGGGCCAATACTTCACCTTAAATA CCTTTTTTCCATCTAGAGATCTACCAAAGATG-TT---------GAGGCTGGGGAGGGT-------TACGGG-------- ---------GAAAGCACCGCAAAGGAGGGCTTGGTGGTTCTGCCGGCTTGAGTC-CCCATCTTCTCCATCGATAAGAGTT TC--ATGATGTA--GTCTTCCTTCTCTT-CTGTTACAGAGAA---CACACCCTTACAATGGGAGATTTCTCTTATAA--- ---ATATCTTTTATCAAAGTATGAGCTTAACT-CCATTTTCAGAGGTTTTCCTGTGCCTGCTCTTATT---TAAAAACAA CCAGCTTAAGAGACTCCTTATGCCAAAGAGGCATATTTTGAAGTCATGTGTAGCGCCCCCTCT-A---CTCT---CATTA GCTAGCTAATTCTTACAAATTAGGAAACAAGTCCCAGCCTCAGGTATGTACGGTTG-CACCT >Solenodon_paradoxus TTATCTTACCCTTTCAAAACTCATCCACTTTTGAGTTT----TGGTTGTCTTATCTGA-----CTCT---TGTTGGGGAG GAAAAATAAATTTTCCCTCATTTCTACTTGATTCT--TGGCTTAG------ACCCCGCTCCAGTTTCTTACAGGTAGGTT AATAGGAGAAAAACAAACAGAAATTTAATAACACATATACCTTTTGTATACATGGTGATAACTGGAATGCAGTAAGCCCA GTCATTATGAATTTAAGTTTATCAGCTTGAGGATTTTAATCTGGACATCAGTAGACTGCCCACCACTGCAATGAGAGTTG AACTTTTATGCATTTTCTCTGGGTTGAGATACAGGCAAAGAAAGACAGTCACTCTCAGTGTGAATAAAGGCCCTTAAGTA ATCCTAAGCAGTCTGGTTTCTGTCTTTGTCACGTTAGATGTTAGGTCCCTCCAACTCAGTGGCTCTGGGATATTATCTGG TGATCAGCAGAGGCAAGCACAGGATGATTAAAATTTATCTAAACTCAGAGGAATGTCATGGGAATCTTAGGGAGTACTCA AAAGCTTCTCTCTGATAGTTCCTATCTGGCAGATGGGGTGAGATGCGCCTGCTTAATCAAGCCAATGCATTCTTCCATGG TTTTTCCATAGAACTAGGCCAGCTTGTTCTGACTTCATCCTCTGCAAGTTCTTCTGGACCAGGCAGAGGGGGTCCCAGGA GTAAATTTCGTTTGCAGTAGGAAATGCAAAGAAAAACATGAGTAACTCCTCG-AAAAGGGCCAAGTCCTCATCTTAAATA CCTTCTTT--AGTGAAAGGCATG--GAGGGTG-TTGGATAATGGGAGGTTATGGGAGGC------TACCTGG-------- ---------AAAAGCACAGTAA----------GGTCGGCCTGCAGAAGTAAGT--CCTGTCTTCACCATTGAGTTGAGTT TCTTGTGATTTTGAATCTTCCTTCTCTTCCTGTGCTTAAAGAGAG-ATAGCCTCACCAAAGGAGTTTTCCTTTGTGA--- ATGTAAATGTCTTGCAAAATGGTAAATTCTCC-TCGGTTTCAGAGCTT---CTGTGTCTGCTACCACT---TAAAAATAA CAAGCTCGAGATCATCCTC-TGACAGAGAGGCATAATTTGGGCTGGCATATTCCAGT-CCTCTGA---CTCT---TAT-- --TAGCCTAGTCTTAGAAACTAGGAAGCACGTCCCAGAGCTGGATAG----CATTG-CACTT >Sus_scrofa TTATTTTATCCTTTCAGAACCCATCCATC-TTGAGATCAGCCT------------TGA-----CCTT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------TAG-- --CAGCCAACCCTTTCAAATTCGGAAGCCAGTCTCAGCCCTGGACAA----GGTTG-CCTCT >Bos_taurus TTA-----TCTTTCCAAAACCCATCCATC-TTGAGATCAGCCTGGCTGTCTTATCTGA-----CTCT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------TAT-- --CAGCCA-GCCTCCTAAATTAGGAAGCAGGTCCCAGGCCTGGACAG----GGTTGCCCCCT >Equus_caballus TTCTTTCACCCTTTAAAACTCCGTCCGTC---------------------TTA-CTGA-----CTC-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------------AT-- --CAGCCGAGTC--ACTGATGAGGAGGCCAGT-----CCCCTGACAG----GGCCG-CCCGT >Tapirus_indicus TTATCTTACCCTTTAAAAACCCATCCATC---------------------TTACTTGC-----CTCT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------CTT-- --CCGCCAAGTCTCACAAATTAGGAAGCAAGTCCCAGCCCCGGACAG----GGTTG-CCCCT >Myotis_myotis TTATTTCACCCTTTCAGAACCCATTCATC-CTGAGATCAGCCTGGCGGTCTTATCTGA-----CTC-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------------AT-- --CAGCCAAGTCTCACAAATGAGGA-----------------------------TGACCCTT >Rousettus_aegyptiacus TTATTCTGCCCTTTCAAAACCCATGCATC-ATGAGATCAGCCTGGCTGTCTTATCAGA-----CTCT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------CAT-- --TAGCCAAGTCTCACAAATTAGGAAGCAAGTCCCAGCCCTGTACAG----GGTGG-CCCCG >Homo_sapiens ATAGCTTACCCTTTCAAAACCCATCC----------------TGGCTGTCTTATTTGA---TTCTCT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------TAT-- --CAGCCAAGTCTTACAAATCAAGAAGCAAGCCTCAGCCCCAGATAG----GGTTG-CACCT Dog9_LTR >MER34A_CF ------------------------------------------------------------------------TGTAGGGG AGGCAAAATTTTACCTCTACCCTCTTAGGGTTTTTCAGCTGGGCCTGAGAATTAAATTGACATAAGACAGATTAACAGGA GAAAAGCATACAAATTTATATAAGTTTTACGTGACATGGGAGCCCTCATAAGGAAATGAAGACCCAAAGAAGTGGCAAAA CCTAAATGCTTTTATACTAGGTTGAACAAAGAGAGGCAA-----TTGTGGAAAAGTAACTAAAATATATGGGG---AGGC TAAAGGAAGATAAGAGTTATT------TTAACAAGGTCTGTTTGTACAGAATTCTCTCGGCCTCGACTCCCC----GTCT CTGGTGATAAGAATG-TTTCTTTCCTCCTGGTATAGGGAGGACATCTTTCACATGGGAGTTTTATCTCCTGCTTTCAGGA AGAAAAGGGAAGGTCAGAGC---GNCCTTCTTGCACCTGCTGTTTTTCAAGTGCCTTTAGCTCAAAATAATCCTTATGCC AAAGTGGCATATTTTGGGGTGGCATATTCTGCCACCCTTCA--------------------------------------- ---------------------------------------------------------- >Canis_familiaris TGTAGATCTGGTAATATTTATTTATATTCTTGCTTAGTTT------CTTTTCTTG------A---GGTT---TGTAGGGG TAGAAAAATT-----TCTTCCCTTCTA-AGTTCTTTGGCT-CGTCTAATAATTAAATTGGCATAAGACA--TTAACAGGA AAAAA----ACAAGTTTA---ATTTCATATAT---AT-GGAGCTC-CATAAAAATACACAACT-CAAAGAAGTGACTGTA GCAAGCAACTAT-----------------------ACAATACATTTGTGAAAAATTAAC-AAGACAAAGAGGT-TTAGGC TTGAGGTAG---TAAATTAGTGAAGAAGTAACAAGGCTTGTCTATACAGCCTTCTCA-GCCCTAAATTCCCTAACCAACT CTGGTGATAAGGATGACTTCTTCCCTCCTGATACAGGAGAGG----------------GATTTATTTCCAGCTTTCAGGG GGACAAAAGAAGGTCGGAGTCGGAGTGTTCTTATACCAACTGTTTCTTAGGTAACTTTAGTTCAAAATAATCAGTATCCT GAAGTGGCATATTTTGGGGTGACATATTCTGCTCCCCTGCA---GGTT---TGGCATATTTTGGGGTGACATATTCTGCT CCCCTGCAGGTTTGTCATCTCTGTCCCTGAAG---AACTACCATTTTGAACTTAGTCT >Felis_catus TATAGATCTGGTGATAGTTATTTATATTCTTGTTCAGAATCTTCAACTTTTCTTG------A---GGTT---TGTAGGAG CAGAACAATT-----TCTTCCCTTCTA-GTTTCTTTGCCT-TGTCTAATAATTAAATTGACATAAGACAGATTAACAGGA GTAAA----ACAAGTTTA---AATTCATACAT---ATGGGAGCTT-CCTAAAAATATGAGACTCCAAAGAAGTGACCAAA GCAGGCAACTTTTATACC---TTTTAGACAGGAAGGCAATCCATTTATGAAGAATTGAC-AAGACAAGGGGGT-TTGGGC TTAGAGTAG---TAAATTAGTGAAGAAGTAACAAGGTTTGTTTATACAGCCTTCTCAGGCCTTATATTCCCT----ATCT CTGGTGATAAGGATGCCTTCTTCCCTCCTGGTAGAGGAGGGGGAC------------------ATTTCCTACTTTCAGGG GGACAAAGGAGCATCAGAGT------GTTTTTATACCAGCTGTTTCTCGGGTAACTTTAATTCAAAATAATCCAGATGCC AAAGTAGCACATTTTGGCGAGCCA-ATTCTGCCCCCTGTCA---GGTT---TATCATCTATTC----------------- ------------------CTCTGTCCCTG------AACTACCA-TTTGCACTTGGTCT >Manis_pentadactyla TGTAGGTCTGGTAATGTTTACTTATATTCTTTTTCAGTTACTTTTGTTTTTCTTG------A---GGTT---TGTAGAAG CAGAAAATTT-----TCTTCCCTTCTG-AGTTCTTTGGCT-GGCCT---AATTAAATTGACATATGACAGATTAACAGGA GAAAA----ACAAGTTTA---ATTTTGTACAT---ACAGGAGCCC-CATAAAAATATGAGAGTCAACAGAAGTGACTAAA GCAACCAGCTTTTATACC---TTTTTGACAAGGAACCAATAAATTTGTAAAGAATTGAC-AAGACAAAAGGAT------T TTGGGGTAG---TACGTTAGTGAA---ATTGCAGGGTTTGCTTATACAGCTTTCTCA-GCCCTAAATTCCCT----ATCT GTGGTGATAAAGATGCCTTCTGCCCTCCTGGAACAAAAAGGT--ACTTTCAC----GGGATTTATTTCCTGCTTTCGGGG GGTCAGAGGAGTGTCAGAGT------GTCCTTGCAAGTGCTGTTTCTCCAGTAACTTTATTTCAAAATAATCAACATGCC AAAGTGGCATATTTTGGGGTAGTCTATTCAGCTCCCTTCCA---GGTT---TACCATCTGCTA----------------- ------------------TTCTATCCCCAGAG---AACAACCATTTTGGACTTGGCCT >Myotis_myotis TGTAGGCCTGGTAATGTTTATTTCTATTCTTATTCAGTTATTTTTGGTTTTCTTT------A---GCTT---TATAGGCG TGGAACATT------TATTTCCTTCTA-GGCCCTTTGGCT-GATCTAATAATTAAACTGGCGTAAGACAGATTTACAGGA TAAAA-CCCCCAAATTTA---ATTATTTATGT---ATGGGAGCCC-CATAAAGACATGAGGCT-CATAGAAGTGAACAAA GCAGGCAGCTTTCATAGC---TTTTAGACGAGAGAACAATCAATTTGTGAAAAATTGAC-AAGACAAAGGGGG-TTGCGC TT----CAC---TAAATTGGTGAAGAAGTAACAAGACTTGTTTATATCGTTTTCTCG-GCCCTAAATTTCTT-----ATT CCGGTGGTAAGAATG-CCTCTGCCCTTCTGATACAGGGAGGGTATCTTTCACATGGGAGATTTGTTTCCTGCTTTGGGGG GAACCAAAGAGGGTCAGAGT---GTCCTTCTTGTACTGGCTGTTTCTCAAGTAACTTTAATTC-AAATAATCAGTATGCC AACGAGGCATATTTGGGGCAGATCTGTTCTGCTCCCCTTAA---GGTT---TATCATCTATTA----------------- ------------------CTGGATCCCTGGAGCAGAAATAGCATTTTGGACTTGGACT >Rousettus_aegyptiacus TATAGGTCTGGTAATATTTATTTCTATTCTTATTCAGTTACTTTTGGTTTTCTTA------A---GGTT---TATAGGGG TGGAAAAATT-----TTTTTCCTTCTA-GGTTCTTTGGCT-GGTCTAATAATT----TGACATAAGACAGCTTAACAGGA GAAAA----ATAAATTTA---ATTTTGTACAT---ATGGGAGCCC-CATAAAAATATGAAACT-CAAAGAAGTGAGCAAA GCAGGCAGCTTTTATACA---TTTGAGACAAGGAAACAATACA-TTGTGAAAAATTGAT-AAGAGAAAAAAGGTTTAAGC TT----CAC---TGAAGTATTGAAGCAATAACAAAATTTGTTGATACACACTTTTCA-ACCCTAAATTCCCT----ATTT CTAAGGATAAGGATGTCTTCAATCCTCCTGATACAGGGAGGGTACCTTTCACATGGAAGGTTTATTTCCTGCTTTTAGGG GGACAAAGGAGTATCAGAAT---GTCATTCTTGCGCTGCCTGTTTCTCAAGTAACTTTAACTC-AAATAATTATTATGCC AAAGTGGCATATTTTGGGGTGATACATTTTGCTCCCCATCA---GGTT---TTTCATCTATTA----------------- ------------------CTCTAGCCCCAGAGGAAGACTGCCATTTTGGACTTGGTCT >Sus_scrofa TGTAGGTCTTGTAATATTTACTTTTCTTCGTACTCAGTTAACTTTGTTTTTCTGG------A---GGTT----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------TATGATCTATTA----------------- ------------------CTCTCTCCCTGGAGGAGAACTACCATTCTACACTTGGTCT >Bos_taurus TGTAGGTCTGATAATATTTACTTTTATTTGTATTTAGTTAATTTTGTTTTTCTGG------A---GTTT----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------TATGCTCTATTA----------------- ------------------CTTCCTCCTTGGAG---AACTACCATTTTGCACTTGGCCT >Equus_caballus TGTAGGTCTGGTAATATTTCTTTCTATTCTTATTTAGTTAATTTTGTTTTTCTTG------A---GGTT----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------TATCATCTATTA----------------- ------------------TTCTATCCCTGGAGGAGAACTGCCATTTTGGACTTGGTCT >Ceratotherium_simum TGTAGGTCTGGTAGTATCTCTGTCTCTTCTTATTTAGTTAATTTTTTTTTTCTTG------A---GGTT----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------TATTGTCTGTTA----------------- ------------------TTCTATCCCTGGAGGAGAACTGCCATTTTGGACTTGGTTT >Condylura_cristata TGTAGGTCTGGTGATTTTTATTTCTGTTCTTCCTCAGGTAATCTGGCTTTTGTTGTTATTTT---AGTT----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------TATCACCTGTTG----------------- ------------------CTTTATCCCCA-AGGTGAACTATTGCTTTGAACTTGGTCT >Uropsilus_gracilis TGTAGGTCTGGTGATTTTTATTTCTATTCTTATTCAATTAATTTCTGTTATTTTTTTT---A---ACTT----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------TATCAT----------------------- --------------------CTATCCCTG--GCATGACTATGGTTTTGGACTTGGTCT >Homo_sapiens TGTAGGTCTGGTAGCATTTATTTTTATTCTTACTCAGTTACTTTTGTTTTTCTTG------A---GGTT----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------TA-CTTCTATTA----------------- ------------------CTCTGTGCCCAGAGGAGAACTATCATTTTGGACTTGGGCT Dog10_LTR >MER34A ------------------------------------------------------------------------TGTAGGGG AGG-AAAAACTTTTCCTCTACCCTCTTAGGTTCAGTGSCTGGGGGCCTGCGAATTAAACTGACAAAAGACAGATTAACAG GAGAAAAGGCATACAAATTTTATTTAATATTT-TACGTGCACGGGAG-CTTCACA----GAAAAGAAGTGAAAACCCAAA GAAGCGGTTAGACCTGGGGGCTTATATACCATTTTAACAAAGG-GC----GATAAATT-GTGGAGAAGTGACAAGACAAA GGAAAAGGGGTTTGGGCTTCTAGGGGCGG------------TAAATTGTGGGAAG-----GTGACTAGGAAATATAT--- --------GGGGGAACTAATGGAAGATAAGGGTTATTTTAGTAAGGTTTGTTTATGCAGACTCATCTTGGTGTCGACTCT CCGTCTCCGG--TGATAAGAGTCGCTCTCCTCTTCCTGGTACAGGGAGGGCACCTTCACAAAGGGAAATTTATGCCCTGC TTTTAGGCAGAWAGGGGGAGGGCAGAGAGCTCTTCCTGCATCTGCTGTTTCTCAATTGCCTTCAGCTCAAAATAAT-CCT TATGCCAAAGTGGCATATTTTGGGGTGGCATATTCTGATCCCCTTCA--------------------------------- -------------------------------- >Canis_familiaris GATTTCTTCTTTAAATGAG------------TCCTAGTGCCATACTGATAACTACTACGTGA---GAGA---TGTAGGGG AGG-AAAAAGTTCTCTTTGAAGTTTTTAGGGTCC-TGGCT--GGGTCTAAAAATAAATCTGAC-AAAAACAGATTAACAA GAGAAAA-GCACACAAATTTTATTGAATTTTTACACAAACATGGGAGCCTTTATA----------AAATGAAGACTTA-- -AAGTGGCCAGAGCTGGAAACTTTCCTATCTTTTAGACAAAGAAAA----AATTAATCTGTGAATAATTGACAAGAC--- ---AAAGAAGTTTGGG---CTAGAGGTAGCCCAGCTAGAACTAAGTAGTCCTTATTTTCCTTAACTAAGACAAGAATTTC CTTAATTAAGATAAGAACAAGGAAGATAAGGGTTATTTTCAGTAGGTTTATA--TGAAGATTCCTCT--------AGTAC CTTTTTCTGGGCCTATAAGAGTATGTCTCCAAG-------------------------AAAAGGAAAATTTACTTCCCGC CTTTAGGCAGAAAAGG--------GAGAACTTT-TCTATGTTTACCACTTCTCAAGTGCCTTCAGTTCAAAATAAG-TTT TATATCAAAGAGGCATATTTTGGGGTGACATATTCTGGTCTCCTTCA---GGAA---TTATTTCCCTCTCACAGAATGTA AGCATCATCACTGGTGTCTTCCTCACATCTGC >Felis_catus GATTTCTGGTCTAAATGAG------------TTCTAGCACCATACAGATAACTACTCTGTGA---GAGA---TGTAAGGA AGG-AAAAAGTTCTCCTCGACACTTTTAGGGTCC-TGGCT--GGGTCTGAAAATGAAACTGAC-CAAGACAGATTAACAG GAGAAAA-GCACACAGA-TTTATTGACTCTTTACATGAACATAGGGGTCTTTATGTGGGAACATGGGATAAAGACCCA-- -AAGTGGCCAAAGCAGGAAGCTTTCATACCTTTTAGACAAAGAAAT----AATAAATC--AGAATAATTGACCAGAC--- ---AAAGGAGTTTGGG---CTAGTGGTAGCCCAACTAAAACTAATTAGTCCTAAACCTCTTTAACTAAGACATGAACTTC CTTATCTAGGACAAGAACAAGGAAGATAAGGGTTAGTTTAAGTAGGTGTGTT--TG--------TCT--------ATTGC C-TTCTCTGGTCCTGTAAGAGCATGTCTCCAAT-------------------------AAAAGGAGAATTCATTTCCTGA CTGTAGGCAGAAAAGG--------GAGAACTTTTTCTGTGTTTACTACTGCTCAATTGCCTTCAGCTCAACATATT-TTT TATAACAAAGAGGCACATTTTAGGGTGGCACATTCTGGTTTCCTTCA---GGAA---CTATCTCCCTCTCACAGAATGTG AACAGCATCACTGTTGTAGTCTTCACATCTGA >Manis_pentadactyla NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNN---NNNNNNNN NNNNNNNNNNNNNNNNNNNNNNCCCTTTGGCTCA-TGGCT--GGGTCTGAAAATTAAACTGAT-AAAGACAGATTAACAG GAGAAAA-GCACACAAATTATAATGACTTTTTACACAGAGGTGGGAGTCTTTGTA----------AGAGAATGATCTGAA AAAATGGTCAGAGCAGGAAGCTTTCATACCGTTTTGACAAAGAAGC----AATACATTTTTGAATAATTGATAAGAC--- -----AAAGTTCTGGG---CTAGGGCTAGTCCCTCTGGAAATAAGTAGTCCTTATCTGCCTTAACTA------------- --------------------GGAATATAAGGGTGAGTTTAACAAGATTGGTC--CTCAGAGTCTTCT--------AGCAC C-TTCTCTGGGCTGATGAGAATCTGTCTCCAAT-------------------------GAAAG---AGTTTAATTCCTGC CTTTAGGCAAAA-----------------------------------------AATTGCCTTCAGCTGTAAATAAT-TTT TATGTCAAGGAGGCATATTCTG---------------GTTTCCTTCA---GAGA---CTATTTCATTCTCCCAGAATGTA AGCATCAGCATTAGTGTCTTCTTCATGCCTGA >Equus_caballus GATTTCTAGTCTGGGCCAGGGCT-----GTCACCCAGCACCATGCTGATAATTATCCTGTGA---GGGA---TGTAGGGG AGG-AAAAAGTTTTCCTTGACCCTCTTAGGGTCC-TGGTT--GGGTCTGAAAATTAAACTGAC-AAAGACAGATTAACAG GAGAAAA-GCACACAAATTTGATAGAATTTTTACATATACATGGGAGCCTTCACA--------AGAAATGAAGACCTGAA GAAGTGGGCAGAGCAGGAAGTTTTCATACCTTTTAGACACACACACACAAAATA------TGAAGGATTGACAAGAC--- ----AGAGGGTTTGGG---CTAGGGGCAG------------TAAACGTTGAAGAA-----GTAACTA------------- --------------------GGAAGATTAGGGTGAGTTTAACAAGGTTTATT--TTCAGATTTCTCC--------AGTGG C-TTCTCTGGGCTGATGAGAGTCTGTCTCCAAT-------------------------AAAAGGAGAATTTATTTCCTGC CTGTGGGCGGAAAAGG--------GGGAGTTTTGTCCGTGCCTACTGCTTCTTAATTGCCTTTAGCTGAAAATAATCTTT TATATCAAAGAGGCATATTTTGGTGTGACATATTCTGGCTTCCATCA---GGGA---CAGTTTCACTCTCACAGAATGTG AGCATCGTCATCAGTGTCTTCTTCACATCTGA >Ceratotherium_simum GATTTCTAA-CTAGGCGAGGGCC-----GTCCCCAAGAACCATACTGGTAAGTATCCTGTGA---GGGA---TGTAGGGG AGGAAAAAAATTTTCCTTGACCCTCTTAGGGTCT-TGGCT--GGGTGTGAAAATTAAACTGAC-AAAGACAGATTAACAG GAGAGAA-GCACACAAATTTGATAGAATGTTTACACGTATATGGGAGCCTTCACA-------AGAGAATGAAGACATGAA GAAGTGGCCAGAGCAGGAAGTTTTCATACCTTTTAGACAAAAAATCCCCCAACATATTTGTGAAGAACTGACAAGAC--- ---AGAAAGATTTGGG---CTAGTGATAG------------TAAATGGTGAAGAA-----GTAACTA------------- --------------------AAAAGATTAGGGTTAGTTTAACAAGGTTTATT--TGCAGATTCCTCT--------AGTTC C-TACTCTGGGCTGATAAGAGTCTGTCTCCAAT-------------------------AAAAGGAGAATTTATTTCCTGC CTTTAGGCAGAAGAAG--------AGGAGTTTTTTCTGGGCTTACTGCTTCTTAATTGCCTTCAGCTCGAAATAAT-TTT TATATCAATGTGTCATATTTTGGGGTGACATATTCTGGTTTCCTTCA---GGGA---CCATTTCACTCTCACAGAATGTG AGCATTGTCATCAGCGTCTTCTTCACATCTGA >Sus_scrofa GACTTCTTGTCTAAATAAAGGCT-----GCGCCTTAGCACTCCACTGACAGCT-TCACGTGA------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------GGGG---CCATTTCACTCTTACAGAGGGTG AGCACTGCCGT--GGGGTTTCTTCCCATACGA >Bos_taurus GATTTCTCGTCTAAGCCAAGGCC-----ACCCTTTAGCACCACACTGACACCTATCACGTGA------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------GGGA---CCATTTCACTCTCGCAGAAGGTG AGCATCATCA---GTGT-TTCTTCACATCTGA >Myotis_myotis GCTTTCTCATCTAAGCGAGGGCCCCTCCAGCACCCAGCCCCACAATGATAAGTATTATGTGA------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------GGGA---CCATTTTGCTTTCAAC------- ----TTCTCATCATTGTCATCTTCACATCTGA >Rousettus_aegyptiacus AACTTCTTTTCTAAGTGAGGGCCCCTCAACCCCCCAGGCCCACCACCATAACT--CATGTGA------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------GGAC---CTATTTCACTCTCACGGAATGTA AGCATTGTCATTAGTATCTTCTTCACATCTGA >Condylura_cristata TATTTCTCTTGAAAACGAGACCT------CTACCCAGCACTACACTGATCGCTTTCCTGTCA------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------AG-A---TT-GTTTGTTCTCACATAGTGTG AGCATCGGTGTCTGTG--------ACATCTGA >Uropsilus_gracilis GGTTTCTCCTCTAAATGAGGGCC-----ACTATTGAACACCACACTGACACCTACCATGTGA------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------GGGA---CATGCT-------------TGTG ACCATCGGTACTGGCATCTTTGTGTCATCTAA >Homo_sapiens GATTTCTAATCTAGGCAAGGGCC------GTGCCAAGCACCACACTGACAGCTATCATTTGA------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------GGCA---ATATTTCACTCTTATAG--TGTG GTCACCGTC-CCAGTGTGTTTTTCACATCTAA Dog11_LTR >MER34C_CF ----------------------------------------------------------------------TGTTGAGG-A GAAAAAAATTTTCCTC----TACCCTTCTAGGTTCTTCTGGCTGGTCTAAGAATCAAATTGACATAAGACAGATTAACAG GAGAAAA-ACAAACAAAAGTTTAATAACATATGTATACCTCCTGTATACATGGGAGAGACCCAGGAAAACTGAGTAACTC CCCGAAATGGCCCAAGCCATCAC-CTTAAATACCATCTCCAGCTAAAGACAAAA-AAGATGTTGGGGGTGGGG--AGTCA GTTATGGGAGGTTACCAGGAAAA-GCACAGTAAACAAGGGTAAGGTTGTTATGCAGATTTAAGTCCTTGCCTTCTCCATT GATAAGAGTTTCTAGAGATTTAGAGTCATCCTCCTCTTCCTGGTACAGAGAGGG-----AGACACCCTTACAAATGGAGA TTTCCCTTATAAATGTAAATGTCT--CTTACAAAAGGGTAACTTCTACTCGGTTTTCAGAGCTTCTCCTGTGTCTGCAGT TTCTTAAAAATAATCAGCCTAAAATAATCCTTATGCCAAAGAGGCATATTTTGGGGTGGCAAATTCTGCTCCCCTTCA-- ----------------------------------------------------------------- >Canis_familiaris CAGCTGAAGTGGAT----------GGAAGGAGATTCAAAACCAAAGCATCTGTCTTAGGC---CTGT---TGTGGGGT-A G-AAAAAATTATTTTCCTTCTCCTCTTCTAGGCTCTT--GACTGA-ACATGCTTGTAATT--CA---GAGAGATTAACAG GAGAAAA---AGGAATAAGTTTAATAACATGTGTA--CCCCCTGTATACATGGGAGATACCTGGGAAAACTGAGTAACTC CCCCAAATGGCCCAAGCCATCGCTTTTAAGTATCATCTCTAGCTAAATAA--AG-TGGATGTTAGAGGTTGGG-TAGCCA GTTTTGAGAGGTTACCAGGAAAACATATAGTAAATA-AGGTAACGTTGCTATGCAAATTTAGAC-----CCTTCTCTGCC CATA--AATTTCTAGA----CA--GTCACTCTCCTCTTCCTGTTACAGAGAGGA-----------------------TGA TTTCTCTTAAAACTGTAAATGTCC--CTTACAAAGAGGTAACTTCTGCACGGTTTTCAGAGCTTCTCCTGTGTCTGCTGT TTCTTAAAAATAATTA--------------TTATGCCAAAGAGGCATATTTTGGTATGGCAAAATGTGCTCCTCATCA-- -GCGG---ACA------TGTATAATGCACTATTGCAATGGATACATTACAGAATGCTATCAATAA >Felis_catus CAGCTAGTATGGAT----------GGAAGGAGATTCAAAACCAAATAATCTGCCTCATGC---ATGG---CATGGGGTCA G--AAAAATGACTTGCCCTTTCCTCTTCTAGGTTCTT--GGCTGAGACATGCCTGTAATT--CA---GACAGATTACCAG GAGAAAA-GTAAACATGTGTTTAATAACATGTGTA--CCTTCTGTGTACATGAAAGATACCCAAGAAAACTGAGTAACTC CCCCAAATGGCCAAAGCCATCAC-TTTAAATATCATCTCTAGCTAAAGACAAAG---GATGGTGGGGGTGGGG-TAGCCA GTTGTGAGAGGTTACCAAGAAAATATACAGTAAACACGGGTAACGTTGTTATGCAGATTTAGATTTTTGCCTTCTCTATT GATA--AATTTCTAGAGATTTA--GTCACTCTTCTCTTCCTGTTACAGAGGGTG-------------------------A TTTCTCTTACAATTGAAAATATCC--CTTACAAAGAGGTAACTTCTACTTTGTTTTCAAAGCTTCTTCTG------CTGT TTCTTAAAACGAATTA--------------TTGTGCCAGAGAGGCATATTTTGGTGTGACAAAATGTGATCCCCTTAA-- -GTAG---GCA------TATTTAATGCATTATTGCAATGGGCACATTATAGAATACTATCAATAT >Manis_pentadactyla CAGTTAAAGCAGAC----------TGGAGAAGATTCAAAACCAAAGCATCTGCCTCCTGC---CTGG---TGTGGAGG-A G-GAAAAATAATTTTCCTTCTACTTTTGTAGGTTCTT--GGCTAAGATACTCTT-TAAT---GAAAAGGCAGATTAACAA GAGAAAGATTAAACAAAAGTTTGGTAATATGT-----TATCTCCCATATCGCAAAGATACCTAAGAAAACTGAGTAACTC TCCAAAATGTCCCAAGACACAAC-CTTAAATTCCGTCTTCAGCTAAAGACAAAAGAAGATGTTGGGGGTAGGG--AGACA GTTGTGGGAGGTGTCCAGGAAAA-ACATAGTAACTAAGGGTAAGATTGTTGTGTAGGTCAAGAT------CTTCTCCAGT GATGAGAATTTCTAGAGATTTA--GTCATTCTCCTCTTCCTGGTGAAGGGGAGGGCGACAGACACCCTTACAAATGGAGA TCTCCCTTGTAAATGTAAAGGTTC--CTTATAAAGGAG-AACTCCTACTCAGTTTTTAGAGCTTCTCCTGTGCCTGCTGT TTATTATGAACAATCAGCCTAAAA------TAATGACAAAGAGGCATATTTTGGGGTGACAAATTCTGCTTCCCTTCA-- -GCAG---GCA------TATA-CATGAGCTAGTGCAACAAATACCTTACAAAATACTAGCAATAA >Myotis_myotis GAGCTAAAGCAACT------ACATGGGAGGAGATC------------------CTCATAT---GTGG---TGTTGGGG-A G-GAAAAATAATTTTGCCTATACCCTTCTAGGTTCTT--GGCTGAGACATCCT-GTAACA--AAAAAGGCAGACAAACAG AAGAAAA--TAAACTGGTGTTTACTAGC--ATTTATACCTCCTGTATACATGGAAGATATTCAGGAAAACTGAGTAACTC TCTGAACTAGCCCAAGCCATCAC-CTGAAATACCATCACCAGCTAAAGACAAAACAAGCTGGTGGGGGTGGAAGAAAGCA ATTATGGGTG-------GGAAAG-TCCCAGTAAAGAAAGGTGAGATTGTTATGCTGATTTAGGT-CTTGCTTTCTCCACT GATAAA----TTTAAAGATTTA--GTCATTTTCCT-------TGATAGAGAGTCACACACACAAATCAGACAAATGGATA TTCCCCTTATACATGTAAATGTCCAGTTTTAAAAAGTGTAATATCTACTCTGTTTTTAGAGCCTCTT-TATATCTGCTGC TTCTTAAAAATAATAA------------------GCCTAAAATAGCTATATTTAAGTGACAAATTCTGCTCCCCTTCT-- -GTGG---GCA------TATTTAATATGCTATTACAATGAATACATCTCAAAATACTATCAATAA >Rousettus_aegyptiacus CAGTTAAAGCAAAT----------GAGAAAAATTCTAAAACCAAACCATCTGACTCATGT---CA-----TGTGGGAG-A G-TAAAAATTTTTTTTTCTCTACCCTTCTAGGCTCTT--AGCTGAGACACCCTTGTAAT---GAAAAGATAAATTAACAG AAAAAA----ATATAGAAGTTTAATAACCTGTATA---CCTCTGTACACATGGAAGATTCCCAGGAAAACAGAAAAACTC CCTAAAATGGTCCAAGCTATCAC-TTAAAATAGCATTTCCAGC-AAAAACAAAAGAAGATGTTGGCAGTGGGAGTAGCCA GTTACAGGAGGCTGTTGGAAAAA-GGATAGTAAAGAAAAGTTAGGTTGCTAGGCAGACATAGAT-CTTGGCTTCTCCATT GATA--GATTTCTGGAGAGTTA--GTCATTTTCCT-----TGATACAGAGAGGG-----ACACACACTTACAAG-AAAGA TTTTCATTATACATGTGATTGTTT--CTTACAACAGTGTAATGTCTACTCTGTTTTTAAAGTTTCTCCTGTGACTGTTGT TTCTTAAAAATAGTCTAAAATAATTT----TTATGACCAAAAGGTATATTTTGGGGTGACAAGTTTT-CTTCCCTTCA-- -GTGA---ACA------TATTTAATGT-TTATTGCAATAAATACATTACCAAATA----CAATAA >Sus_scrofa CCACTCAAGTAGAT----------GGGAGGAGATCTCAAACCAAAGTATCTAAATCGTGT---GTGG------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------GCA-----TTATTTAATGTGCTGCTACAATGAAAACATGATAAAATACTATCAGTAA >Bos_taurus CAGCTCAAACAAAT----------GGGATGAAATATGAAAA-AAAAAATCTACCT--TGT---GTGA------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------GCA------TATT-AATGTGCTATTGGAATGAATACA-GACAAAATATTGTCAATAA >Equus_caballus CAGCTAAAGCAGGCGGGGGGGGGGGGGGGGGGATCCAGGAGCA-AGCATCTGTCTCCTGC---GTGG------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------GCA------TATTTAATGTGCTACTGCAATGAACACATTACAAAATACTATCAATAA >Ceratotherium_simum CAGTTAGAGCAGAT----------GGGAGGAGATTCAGAACCAAAGCATCTGTCTCCTGC---TTGG------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------GCA------TACTAAATGTGCTATCGCAATGAATACATTACAAAATACTATCAATAA >Condylura_cristata CAGCTAAGTCATAT-------------AGCTGTTCAAAGCCAAAAGCATCTGCCTCAAGC---ATGG------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------GGA------TATTA--------ATTGTAATCGACACATTACAAAATACTACTGA-AA >Sorex_araneus TAG-TGAAGCAAAT----------GGGAAGTGGTCCAATAACAGAGCAGAAGCATCTGAC---TTGT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------GCACAGACATATTTAGTGTGGTATTGTAATGGATAC-TTACAAAATACTATCTATAA >Cavia_porcellus CAGTCAAGGCAGGT----------GGGAAGCAATCTTAAAACAAAACACTGGTGTTCTGC---TTGG------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------GCA------TAGTTCATGTGCAATTACAATGTATACATTACAAAATAGGGCCAAAAA Dog12_LTR >MER34C_CF --------------------------------------------------------------------TGTTGAGGAGA- --AAAAAATTTTCCTCTACCCTTCTAGGTTCTTCTGGCTGG--------TCTAAGAATCAAATTGACATAAGACAGATTA ACAGGAGAAAAACAAACAAAA--------GTTTAATAACATATGTATACCTCCTGTATACATGGGAGAGACCCAGGAAAA CTGAGTAACTCCCCGAAATGGCCCAAGCCATCACCTTAAATACCATCTCCAGCTAAAGACAAAA-AA-GATGTTGGGGGT GGGG----AGTCAGTTATGGGAGGTTACCAGGAAAAGCACAGTAAACAAGGGTAAGGTTGTT-ATGCAGATTTAAGTCCT TGCCTTCTCCATTGATAAGAGTTTCTAGAGATTTAGAGTCATCCTCCTCTTCCTGGTACAGAGAGGGAGACACCCTTACA AATGGAGAT------TTCCCTTATAAATGTAAATGTCTCTTACAAAAGGGTAACTTCTACTCGGTTTTCAGAGCTTCTCC TGTGTCTGCAGTTTCTTAAAAATAATCAGCCTAAAATAATCCTTATGCCAAAGAGGCATATTTTGGGGTGG-CAAATTCT GCTCCC----CTTCA----------------------------------------------------------------- ---------------------------- >Canis_familiaris AGAAATAATTTCTTTATCTTGCTGATTGCTAACTTCTCAGTGCCTTTAGTGTGCTAAC---ATGC---TGTTGGAGAGAT AACATAATTTTCCCTCTACCCTTCTAGGTTCT--TCGCTGAGATACATCTGTAATAATAATA-------AAAAAAGATTA ATAGGAG----ACAAACAGAA--------GTTTAATAGC--ATGTGTACCACCTGTAT--ATGAGAGATGGTTAGGAAAA CCGAATAACTGCCCAAAACATTCCAAGCTGTCAGCTTAAATAACATCTTCAGCTAAAAACAAAAGAA-AATATTGGAGGT GAGG----AGTCAGTTATGA-AGGTTAGTAGGAAAAGCACAGTAAATAAAGGCAAGGTTGTT-GTGCAGATTTAGGTCAT TGCCCTCTCCACCAGTAAGAGTTT-TAGAAATTTAGAGTCATTTTTCTCTTCCTGCTACAGAGAAGGAGACAGTCTAACA GATGGAGATTGTACATTTCCCTATACATGTAAATGTCTCTTACAAAAGGGTAACTTCT---CAGTTTTTAGATCATTTCC TATGCCAGATGTTTCTTTAA---AATCAGCCTAAAATAATGCTTATGCCAAAGAGACATAGCTTGGG-TGGTTATACCCT GCTCCC----CTTCA---GTGC-----CTAGCTCTTTTGGAGAAGCTATGGAA--------------------------- -TATATA-----TGCACAGACTTCCTAC >Felis_catus AGAAATAATTTCTTTATTTTGCTGATTGCTAAATTCTCAGTACCTTTA-TGTGCTAAT---GTGC---TGTTGGGAAGAT AAAATAATTTTCCCTCTACCCTTCTATGTTCT--TGCCTGGGATGCACCTGTAATAATAAAAAT-----AATAAAGATTA GTAGGAGAAAAATAAACAGAA--------TTTTAATAAC--ATATATACCACCTATAT--ATGGGACATGCCTAGGAAAC CTGAATAACT-CTCAAAAGATTTCAAGCTGCCATCTTAAATTACATCTCCAGCTAAAGACAAAAGAA-GATACTGCAGGT GAGG----AGTCAGTTATGAGAGGTTACCAGGAAAAGCACAGTAAACAAAGGTATGGTTGTC-AGGCAAATTTAAGTCAT TGCCTTCTCTACTGATAAGAATGT-TAGAAATTTAGAGTC---TTTCTCTTCCTGGTACAGAGAAGGAGACACCCTAACA GATGGAGATTGTACATTTCCTCATACATGTAAATGTCTCTTACAAAAGGATAACTTGT---CAGTTTTTAGAGCTTTTCC TGTGTCAGCTGTTTCTTTTAAA-AATCAGCTCAAAATA------ATGCCAAAGAGGCATAGTTTGGGGTGGTTGTATTCT GCTCCC----CTTCA---GTGC---CAATAGACCTCCTGGAAAAGCTATGCAA--------------------------- -TATATG-----TGCACAGATTTCCTAC >Myotis_myotis AGAAATGATTTCTTCATTTTGCTGATTGTCAAATTCGCAGTGCTTTTAGTATGCTAAT---GTGC---TGCTGAGGAGAA TAAATAAGTTTTGCTTTATCCTTCTAGATTCT--TCGCTGAGACTGCACTGTAATAAA-----------AAGACAGATTA ACAGGAAAAAAAAAAACAAAACACCAGATGTTTAATAAC--ATTTATAACTCCTGCATACATGGGAGATGTCCAGAAAAA C----TAACTCTTTGAAATGTCTTAAGTCACCACATTAAATAATA----------------------------------T GAGA----AGGCCAATTTGGGCGATGACTGGGAA---------AAACAAGGGTAAGGTTGTTAATGAGGATTTTAGTCAT TGACTTCTCCATTCATA--TATTTCTAGAGATTTAGAATTATCTTTCTTTTCCTAGTCTAGACAGGGAGACACCCTTACA CATGGAGATT-------------------------TCTCTTATAAAAGGGTAACTTCTGCTCTGTTTGCAGAACTTTCCC AAT----GCTCTTTCTTAAAAATAATCAGCCTAAAATAA-CCTTATGCCAGAGGGGCCTATTATGGGGTGG-TATATGGT GTCCCCCCCACCTCA---GTTC---CTATTGATCTTCCAGACAAAATACAGTT--------------------------- -TATTTA------CCACAGATTTCCTAC >Rousettus_aegyptiacus AGAAATAATTT----ATTTTGCTGATTGCTAAATGTACAGTGCTTTTAGTGAGTTAAT---GTGC---TGTTGAGGAGAA AAAATAATTTTT-TTCTACACTTATAGGTTCT--TGGTTAAGACTCTCCTGTAATA-------------AAAAGACATTA ACAGGAGAAAAACAAAAAGAT--------ATTTAATAAC--ATGTACATCTCCTGTATATAT-AGAGATACCCAGAAAAA CTGAGTAACTCCCTGAAATGTCTTAAGACACTGTCTTAAATAATATCTTTAGCAAAAGACAAAAAAATGATGTTAGGGGT GGAGGGAAGGCCAGTGATGAGAAGTTGGCAGGAAAAGCACAGTAAACAAGAGTAAGATTATAAATGAGGATTTAAACCAT TTCCTTTCCCACTGATAAGAGTTTCTAGAGATTTAGAGTCATTCTCTTCTTCCTGCTACAGAGAAGAAGGCACTCTTACA CATGAAGAT------TACTCTTATA-GTATAAATATCTTCTATAAAAGAGTAACTTCTACACAGTTTTCAGAGCTTTCCC TACATCTGCTGTTTCTTAAAAATAATTAGCCTAAAATAATCCTTATGCCAAAGAGGCATATTTTGGGTTCA-TATATTCT TTTTCC----CTTCA---GTTC---TTA---------CAGACAAACTATGGTATATAT---------------------- -TATATA-----TGCATGAATTTCCTAC >Sus_scrofa AG-AATAATTTCTTTATTTTGATGATTGCTAACTTCTCAGTGTATTTAACATTCTAAT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------ATGC---CTGTAGATATTCCAGAGAAACTGTA------------------------------ -CATAGAGTTCTTACACAGATTTCCTAC >Tursiops_truncatus AGAAATAATTTCTTTATTTTGCTGGTTGCCAGAACCTCAGTGCCTTTAGTGTGTTAAT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------GTAC---TTATAGATATTCCAGAGAAACTATGATATATATATATATATATATATATATATAT ATATATA-----TATGCAGGTTTCCTAC >Equus_caballus AGAAAGAATTCCTTTATTTTGCTAGTTGTCAAATTCTCAGTGTCATTAGTGTGTTTTT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------GTGC---CTATGGATCTTCCAGAGAAACTATAGTA--------------------------- -TATACA-----CGCACAGATTTCTTAC >Ceratotherium_simum AGAAAGAATTTCTTTATTTTGCTGGTTGCCAAATTCTCAGTGCCATTAGTATGCTAAC---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------GTGC---CCATGGATCTTCCAGAGAAACTATGGTA--------------------------- -TATATA-----TGCACAAAT-TCCTAC >Condylura_cristata AAAAATG-----TGTGTTTTTC---TTGTCAAATTCTCAGTGCCTTTAGTGTGATGAT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------GCAC---TTATAAATCTTTTAGAGAAA----------------------------------- -CACATG-----CACAGAGATACTGTAC >Uropsilus_gracilis NNNNNNNNNNNNTCTATTTCAC---TTGTCAAATTCTCAGTGCCTTTAGTGTGATAAT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------GCAC---TTATAAATCTTTTAGAGAAACT--------------------------------- -CATGCA-----CAAAGAGATACTATAC >Homo_sapiens AAAAATAATTTCTTTATTTTGCTGGTTGCTAAATTCTCAGTGTC-TTATTGTACTGAT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------GTGC---TTGCAGATGTTCCAGAGAAGCTGTGGTA--------------------------- -TA---------TGCACAGATTTCCTAC Dog13_LTR >ERV54-EC_LTR -------------------------------------------------------------------------------- -------------TGTTAAAAACAA----GACAACAGGCCCAAAATGGAGTCACTTATGCTAAGCCCCACGTCACCAAAC CGAGACTTAACTTAATTACAGTTTCGGCTCTCC-CAGAAATGGAATCTTAAACCAGTCAATCAGGAATCACCTGATCAGC ACTAGTTAGGTAATCTGCCTGATAGACCCC-TGCCATCCCCTAAAGGAAAGTAACCTTGCAATAACCAATCCACTTTTTT GCCTAGTATAACTTCCTTGTTC-----CTGCTCCCTTCTGCCTATAAAAGTCTTTCATTTT------------------- --------GTACAGCTCCTCGGAGCTCCTTTCTATCTGCTAGATTGGATGCTGCCCAATTC--ATGAA----TCATTGAA TAAAGCCAATAAGATCTTTAAAATTTACTCAGTTGAATTTTGTTTTTTAACA---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------- >Canis_familiaris AAGATCAG-TT-TTGGCCAGGAATG------TTTACCTAAAAATTTGCAGTTTAGCTCAATAACATGGATGGTGCTTTGG CAT---CTAT---TGTTGAACACAG----GGCAACAGGCCCAAAATGGAGTCACTTATGCTAAACCCAGGGTCACCAAAC CGAGACTTAGCTTAATTACAGTTTTAGTTTTCC-CAGAAAAGGAATCATAAACCAGTCAATTAAGAATCAGTTGATCAAC ACTAGTTAGGCCATCTGCCTAAAGGTCATC-TGCCATCCCCTAAAGGAAAGTAACCTTGCAATAACCAACCCGCTTTTTT ACCTAGTATAACTTCGTTGTTCGCATTCTTTTCTTTTCTGCCCTTAAAAGTCTTTCATTTT------------------- --------GTACAATTCCTCAGAGCTCCTTTCTTCCTGCTAGATTGAATGCTGCCCCATTCGAATTGA-TTTTTGCTCAA GTAAACTCATAAAATTTTTAATATGC-CTCAG-----TTT-ATCTTTTAACA---TGAT---GGAAGTGGAGCCTTTCC- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------GT TAAAATC------------------------------------------------------------------------- ------------------------------------------------AAGGTATATGTTGCTCTCAACTG >Felis_catus AAGATCAG-TT-TTGGCCAGGAGTG------TTTACCTAGAAATTTGCAGTTTGGCTCAAAAATACGGACAGTG-TTTGG CAT---CTGT---TGTTGAAAACCG----GACAACAGGCCCAAAATGAAGTCACTCATGCTAAGCCCAGCATCACCAAAC CGAGACTTAACTTAATTACAGTTTCAGCCGAAAGCTGAAATGGATTCGTAAACCAGTCAATCAGGAATCGGTTGATCAAC ACTAGTTAGGTCATCTGCCTGATAGACCCCTTGTCATTCCTTAAAGGAAAGTAACCTTGTGATAACCAACTCTCTCTTTC ACTAAGTATAACTCTGCTGTTC-----CCATTCTTTTCTACCTATAAATGTCTTTCTCTTTTTTTTTAATTTTTTTTTTA CGTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNN---NNNNNNNNNNNNNNNNN- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------NN NNNNNNN------------------------------------------------------------------------- ------------------------------------------------NNNNNNNNNNNNNNNNNNNNNNN >Manis_pentadactyla NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNCAGTTTGGCTTAAGAGTATGGCTAGTGCTTTGG GAA---CTAT------TAAAAACAA----AACAGCAGGCCCAAAATGGAGGTACTTATGCTAAGCCCTGGGTCACCAAAC TGAGACTTAACTTA--TTAAGTTTTGGTGCTCC-CAGAAATGGAATCTTAACTCAGTCA----GGAATCACCC-ACCAGT ACTAGTCAGGTAACCTGCCTGTTAGATCCT-TACTATCCCCTAAAGGAAAGTGACTTTGCAATATTCAACCTGTATTTTA CCTTAGTACCTCTTCCTGCGTC-----CTGCTCCTTT-TGTCTATACAAGTCTTTTATTTT------------------- --------GTACAGCTTCTTGGAGCTCCTTTCTATCTGCTACATTGGATACTGCCTGATTCAAATAAATTTTTTGATCAA ATAAACTCGTAAAATTTTTAATAT-------------TTT-ATCTTTGAACA---CTAT---GGAAGTGGAGTTTTGCC- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AG TAAAATC------------------------------------------------------------------------- ------------------------------------------------AAGGTATATCTTTCTCTCAACTG >Sus_scrofa AAGCTCAA-TT-TTGACCAGGACTA------TTGACTGAGAAATTTGCAGTTTAGCCCAATAACATGGACAGTGCTTTGG AAT---CTAC---TGTTAAAAAGAA----GACAACAGGCTGAAAATGGAGTGACTTATGCTAAGCCCTACATCACCAAAT TGAGATTTAACTTAATTATAGATTCTGCTCTCC-CAGAAATGGAACCTTAAATCACTCAGTCAGGAATCTCCTGGTCAGC ACTAGCTAGATAATCTGCCTGAGAGACCTC-TGCCATCCCCTAACAGAACAAAAC--CATAATAAGCAGCCCACTTTTTT GCCTAAGATAACATCCTTGTTC-----C---TCCCTTCTGCCTATAAAAGTCTT--GTTTT------------------- --------GTATAGCTCCTTGAAGCTCTTTTCTATCTACTAGACTGGATGCTGCCCAA-TTGAATCAA-TTGTTGCTCAA ----ACTTGTAAAATTTTTTAAATGC-CTTGG-----TCT-ATCTTTTAATA---CCAC---AGAAGTAGAATATTATC- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AG TACAATC------------------------------------------------------------------------- ------------------------------------------------AAGGTATATTTTGCTCCCAACTG >Bos_taurus AAGATCAA-TTTTTGACCAAGACTAGAACTATTTACCTAGCAATGTGCAGTTTAGCTCAATAACATGGATAGTGCTTC-- TAT---CTGT---ATAGTAAATGGATAGTGAATCTAGGCCCCAAATGGAGTCACTTATGCTAAGCCCTGTATCATCAAAC TGAGATTTAACTTAATTACAGTTTCTGCTTTCC-TAGAAATGGAATCTTAAATCAGTCAATCAGGAATCACCTGATCAGC ACTAGTTAGGTCATCCGTCTGATAAACCCC-TGTGATCCCCTAAAGGAAAGAAAC--CACAATAGCCAACCCACTTTTTT ACCTAGTATAATTTTCTCATTT-----CTGCTCCTTTCTGCCTATAAAAATCTTTCATTTT------------------- --------GTACAGCTCTCTAGAGCTCCTTTCTGTCTGCTAGATTGCATACTGTCCAATTCAAATCAG-TTGTTTCTCCA ----ACTTGTAAAAACTTTAACATGC-CTCAG-----TTT-ATCTTTTAACA---CTGT---GGAAGTTGAGT-TTGCC- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AG TATAGTC------------------------------------------------------------------------- ------------------------------------------------AAGGTATATTTTGCTCTCAAATG >Equus_caballus AAGACCAA-TTTTCAAGCAGAAGTA------TTTACCTAGAACTTTGCAGTTTGGCTCAATAATATAATCAGTGCTTTGG AAT---CTAT---TGTCAAAAACAA----GAGAACAGGTGCAAAATGGAGTCGCTGATGCTAAGCCCCACACCACCAAAC CAAGACTTAACTTAGTTACACTTTTGAC--TCC-CAGAAATGAAATCTTAAATCAGCCAATCTGGAATCATCTAATCAGG ACTGGTGAGGTCATCCGCCTGATAGAACCC-TGCTCTCCCCTAAAGGAAACTGACCTTGCAATAACCAACCGGCTTTTTC TTCTAGTATAACTTCA----TC-----CCACCCCCTTCTGCCTATAAAAGTCTTTCAGTTT------------------- --------GTACGGCTCCTCGGAGCTCTTTTCTATCTGCTAGATTCGCTGCTGCCTGATCTGAATTGA-TTTTTGCTCAA ATAAACTCTTAAAATTTTTAATAAGC-CCCAG-----TTT-ATCTTTTAACA---TTAT---GGAAATGGAGTTTTGCC- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AG TAAAATC------------------------------------------------------------------------- ------------------------------------------------AAGGTATATTGTGCTCTCAAATG >Ceratotherium_simum AAGATCAG-TTTTTGACCAGGAGTA------TTTACCTAGAACTTTGCAGTTTGGCTCAATAATATGGACAGTGCTTTGG AAC---CTGT---TTTTAAAAACAA----AACTACAGGTGTAAAATGGAGTTGCTTATGCTAAGCCCCGAATCACCAGAT CAAGACTTAACGTAATTAGCGTTTT--CACTCC-CAGAAACACAATCTTAAATCAGTCAATTGGGAATCACCTGATCAAC CC--GTTAGATAATCTGCCTGATGGACCCC-TGCCATCCCCTAAAGGAAAGTGAC--TGTAATAATCAAGCAGCTTTTTT GTCTAGTGTAACTTCCTTG-TC-----CAGCTCGCTTCTGCCTGTAAAAGTCTTTCACTTT------------------- --------GTATAGCTCCTCAGAGCTCTGTTCTGTCTGCTAGATTGGATGCTGCCTGATTTGAATTGA-TTTTCCCTCAA ATAAACTC--AAAATTTTTAATACGC-CCCAG-----TTT-ATCTTTTAACA---CTCT---GGAGGTGGAGTTTTGCC- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AG TAAAATC------------------------------------------------------------------------- ------------------------------------------------AAGGTATATTTTGCTCTCAACTG >Myotis_myotis AAAGTCAATTTTTTGACCCAGAGTA------TTTACCTAGAAATTTACAGTTTGGCTCACTCATATGGATAGTGCTCTGC AAC---ATAT---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------AGAGGTGGTGTTTTGCC- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AG TAGAATC------------------------------------------------------------------------- ------------------------------------------------AGGGTATATTTTGCTCTGAACTG >Rousettus_aegyptiacus AAGGTCAA-TT----------------------------------TGCAGTTTGGCTCAAGCATATAGACAGCGATTTGC AAC---CTAT---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------AGAGGCGGCATTTTGCC- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AG TAAAATC------------------------------------------------------------------------- ------------------------------------------------AAGGTATATTTTGCTCACAACTG >Condylura_cristata ATGGTTATTTT--------GAGAGA------TTTACCCAGAAATTTGC--TGTGACTCAATAATCTGAACAGTATTTTGG AAT---CTCT---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------GAAGATAGAA--TTGTC- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AG TAAA---------------------------------------------------------------------------- ---------------------------------------------------------------CTCAACAG >Sorex_araneus NNNNNNNNNNNNNNNNNNNNNNNNA------TTTACCCAGAAATTAAAAG-TTAACTCAATAATATGAACAATGCTTTGA AGT---CTAT---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------GGAAATGGGATTTTGCCA AATGACATCAAGAAATGTTTTCCTCTCATGCCCTGCCACAGTGGCAGGGTGGGTTGGGGGGGAGATGGGATTGGGGAGGG TGGGAGGGACACTGGGTTTACGGGTGGTGGAGAATGGGCACTGGTGAAGGGATGGGTTCCCGAACTTTGTATGAGGGAAG TATAAGCACAAAAGTGTTATAAATCTGTAACTGTACCCTCACGGTGATTCTCTAATTAAAAATAAATAAATTATAAAAAT AAAAAATAAAAAAAAATCAACTATCAAAAATTTAAAAAAAAAAAAAAAAAGAAATGTTTTCCTCTCAACTG >Homo_sapiens AAGGTCAA-ATTTTGACCAGCAGTA------TTTACCTAGAAACTTGCATTTTGACTCAATAATATGGACAGTGCTTTGG AAT---CTAT---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------GGAGGTGATGGTTCACC- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AG TAAAATC------------------------------------------------------------------------- ------------------------------------------------AAGGTATATTTTGCATCTAACTG Dog14_LTR >CARERVR1_LTR --------------------------------------------------------------TGTTGGGGAAGGTCATCG AGAAGACGTGACCGCCGGTTGACCC--GTGAGCTGGACCCGGG-CAATCAGAGGCTCCTCACCCCCTCCCCTGTCCTTGG AATGTGGGTTCCGCTTGCCTTCCCCGCTCCCAGAGGCTGCTCCAAGGACACAGCCTTG----AGATAGTGATGTGGTGTT GAGAACACCTGNACGGTATACGTGACTGAACCCAGTTAAGGCCTCTATATAAACTTTTAAGATT-TGGCGGGC---GGGT GCGGAGATCTACTCGTCTTGCTGCCGCCCAAGACAAGCCTCGTATGTAAGTTCCCTTTGCTTATTAAANCTGCCACCT-- --------ACCAACCTGGAGTGGCCTGCCTC-----------------------TTTCTTCGGTCTCTCCCTGCCCTCTG CGTA-CGGGGGCCGGTTTCAGATTACACCCGGGAAGCTCCCGAGGGGGTTGCGAACCAACA------------------- ------------------------------------------------ >Canis_familiaris ATATTCCTAGAAGATGTTAAAACAGCAGAAAGCAGGATATCTAGTTTATT---AGCATC---TGTTGGAGAAGGTCAGTG ACAAGA-----CCACTGGTTTACCT--GTGAGCTGGAGCTGG--CGATCAGAGCCTCCTTA---TCCCACCTGTCCCTGG AATGGATG-TCTGCCC-CCATTCCT-CCACTAGGAGCTGTTTCAGGTTCACAGTCTT------GAGAGCGAGGTGGTGTT GAGACCATCTGGACCAAATATGTGACTGAACCCAGTTAAGTCCTCTGTATAAAT--TTAGGATTCTGGG----------- --AGAGATCCATCAGTCTAGTTGCCGCCCAAAACAAGCCTCATATGTAAGTTCCT-TTGCTTATTAAACCTGCCACCT-- --------ACCAATTTGAAGCAGCTCACTCC------------------------TTTTTCAATCTCTCCTTGCCCTCCA TGGA-TGGAGGCCAGTTTCAGGTTTTACCTGGAAAGTTCCCGA---TTTTTCGAACCAACA---GCAATC---CTTTGTA AAACTGCTTCTCCTGAGTAGTTGTTCTGAATTGGGCACTG-GTATGAT >Felis_catus ATGTTGCTAGAAGAAGTTAAAACAGCAGAAAGCAGGCTGTCTAGTTCATT---AGCGTC---TTTTGGAGGA-ATCACTG AGAAGACAGGACTGCTGGTTGACCT--GTGAGCTGGATCTGG--TGATCAAAGGCTTCTCA---CCCCACCCATCCTTGG AATGTACG-TCTGCCCACCACTCCA-CCACTAGGAGCTATTTCAAAGACAGAGCCTT------GAGAGTAAGGTGTTGTT GAGACCATCTGAACTGAAAATGTGACTGAACCTAGTGAAGGTATCTATATAAAC--TTAGGATTCTGGCAGGC---CAGT GCAGAGATCTATTAGTCCTGTGACCACCCACAATAAGCCTCATAGGTTAGTTCCC-TTGCTTGTTAAACCTGCCACCTAC CAATCTGAACCAATCTGAAGTGGCTTACCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTCTCTCCTTGTCCTTCA TGTA-TGTGGGCTAGTTTCAGACTTCACCTGGGAAGCTTCCAA---TTTTGTGAACCAAGA---GCAACC---CTTTGCA AAACTGCCTCTCCTGAGTTG---TTCTGAATTGGGCACTG-TTATGAT >Manis_pentadactyla ATA-TCCCAGAAGAAGCTCAAACAGCAGAAACAAGG---TCTAGTTCATT---AGTATC---TGTTGGAGGAGGTCATCA AGAAGACATGACCACTAGGTGACCTAAGAGAGCTGGCCTCAGG-CAATGGGAAGCTTCTCACCCTCTCCCCTGTCCTTGG AGCATACATTTTGCCCCCATTTCCCACAGCTGGAGCCATTTTCAAGGATGCAGACCTG----AGAGAGCAACGTGTTGTT GAACCCATCTGAACAGTATGCGTTCT----CTCAGGTAAGGCTGCTGTACAAAC--TTAAGATTCTGGAGAGT---GGGT GTGGAGTTCTACTCGCCTTGCAGCTGCCCAAGACAAGTCTCATGGGTAGGTACCC-TTGCTTATTAAAACTGCCACCT-- --------ACCAATTGGGAGTGGCCTGCCTC-----------------------TTTCTTCAGTCTCT-ATTGCCCTCTG TGTA-TAGGGACCAGTTTCTGATTTCACCCAGGGAGCTTCCAA---GTTCA--------CA---G---TC---CTTTGCA AAATTGCTTCTCCTACATTG---TTCTGAATTAGGCCCAG--TATGAC >Sus_scrofa GTATTTCTTGAAGAAGCTGAAGAAACAGAAAGAAGGTCATCTAGTTCACT---AACATC---TGTCAAAGGAGATCACTG AGAGGATGTGTCCATTGAATGACCC--TCAAGCTGTACCCAAG-CAGTAGGAGGCCCTTCACTCCCTCCCCAGTCCTTGG AATGTATGTTCTACCCATCATTTGC-CCACAAGGAACGGTTTCAAGGATGTA-CCTTG----AGAGAGTAAGATGCTATT GAGACCATCTGAACTGAATACATGCCTGAACCCAGGAAAGG---CTATAAAAACTTTTAAGATTCTGGCAGGC---AGAT GCAGAGATCAACTTGTCTTACAGCTGACCAAGACAAGCCTTGGATA-----TCCC-TCACTTATTAAAATAGCCAC---- ---------------------AGCCTGTTTC-----------------------TTTCTTAGGTCTCTTCCTGCACTCTT TGTA--CAAGGCCAGTTTCAGATTTCACCTGGAAATCCCTTCA---TTTTGCAAATCAACA---GCATCC---CTTTGCA AAGTCTCTTCTCTTGAATTGCTGTTCTAAATTGGGCCCTG-GTATGAT >Tursiops_truncatus GTATTCTTTGAAGAAGCTAAAGCAACTGAAAGCAGGTCATTTAGTTCATT---AATATC---TGTTGGAGGAGGTCATGG AGAGGATGTGCCCGCTGGTTAACCC--TCAAGCTGTACTCAGG-CATTGGGAGGCTCCTCACTCCCTCCCGGGTCCCTGG AATGTACCTTCTGCCCACCATTTGC-CCACTAGGAGCTGTTTCAAGGATG-AATCTTG----AGAGAGTAA-ATGCTGTT GAGACCATCTGAACTGTATAAGTGTCTGAACCCAGGTAAGGCT------------TTTAAAATTCTGGCGGGC---AGGT GCAGAGATCTACTGGTCTTGCAACTCACCAAGACAAGCCTGGTGTG-----TCCC-TTGCTTATGAAAATCGCTACCT-- --------ACCAATCTGGAGTGGCCTGCTTC-----------------------TTTCTTAGGTCTCTCCCTGC-CTCTT TGTA--TGGGGCCAATTTCATATTTCACCTCAAAAGCTACTCA---TTTTGTGAAGGAACA---GCACCC---CTTTGCA AAGTCTCTTCTCCTGAGTTGCTGTTCTGAATTGGGCTCTG-GTATGAT >Equus_caballus ATATTCCTGGAAGAAGCTAAAATAGCAGAAAGCAGGTCACCCAGCTCCTG---AGCATC---TGTTGGAAGAGGTCATTG AGAGGACG-------TGGTTGACCT--GTGAGCTTGTCCTGT--CAATCGGAGGCTCCTCAGCTCCCCCTCTGTCCTTGG AATGTGCATTCCACTCACCATTCCC-TCACTAGGAGCTGTTTCAAGGATGCACCTTTGATCAAGAGAGCAATATGTTATT GAGGCCATCTGAATGGTATATGTGACTGAGCCCAGGTAAGGCCTCTAGACAAAC-TTTAAGATTCTGGAGAGC---GGGT CCAGAGATCTACTCATTTTGTGGC-AACTAGGGCAAGCCTCCTAAGTCAAGTTCCTTTGCTTATTAAACCTGCCATCT-- --------ACCAATCTGGAGTGGC-TGTCTC-----------------------TTTCTTCAGTCTCTCCTCACCCTCCG TGTA-AAGGGGCCAGTTTCAGATTAGACCTGGGAAGCACCCAA---ATTTGTGAACCAG-----------------TGCA AAATTGCTTCTCCCGAATTGCCAAGCTGAATTGGGCTCTG-GTATGAA >Ceratotherium_simum ATATTCCTAGAAGAAGCTAAAATAGTGGAAAGCAGGCCATCTAGTTCTTG---AGCATC---TGTTGGAGAAGGTCATAG A---GATGTGACCTCTGGTTGACCT--GTGAGCTGGTCCTGG--CAATCAGAGGCTCCTCAACTCCTCCCCTGTCCTTGG AATGTGCATTCTGCCCACCATTCCC-CCAATAGAAGCTGTTTCAAGGATGCAGCCTTGATCAAGAGAGCAATATGTTGTT GAGGCCATCTGAACAGTATACATGACTGAGCCCAGGTAAGGCCTCTATATAAAC-TTTAAGTTTCTGGAGGGC---GGGT GTGGAGATCTACTCATCCTGTGGC-ACCCAAGACAAGCCTCCTAAGAAAGTTCTC-TTGCTTATTAAACCTGCCACCC-- --------ACCAATCTGGAGTGGTACGTC-------------------------TTTCTTAGGTCTCTCCCTGCCCTCTA TATA-TGGGGGCCAGTTTCAGATTTCACCAGGGAAGCTCCGAA---GTTTGTGAACCAG-----------------TGCA AAATTGCTTCTCCAGAATTGCCATTCTGAATTGGGCTCTG-GTATAAA >Myotis_myotis NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNN---NNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NATGTATATTTCCCCCACCTGTCCC-CAAATAGGAGCTGTTTTAAGAACATAGCTATG----A---GGTAGTACCATGAT TAGACAATTAGGTCTGCAAATATGACTGAACCCAATTAAGACCTCTATAAAAAC--TTAAGATTTTGGCTGGCAGGGAGT GCAGAGAGCT--------CGCTTTCACTCAAGACAAGCCTGGTATGTAAGTTCCC-TTGCTTATTAAATCTCCCACCT-- --------ACCAATCTGGAGTGGCCTGCCTT----------------------TTTCCTTTGGTCTTTCCTTGCCATCTG TTTATGGGAGGACAATTTCAGATT-CACCTAGGAAGCTCTTGA---GTTTGCAATCTAACA---GGACAC---TTTTGCA AAATTGCTTCTCATGAATTGCCCTTCTGAATTGGTCTCTG-GTATGAT >Rousettus_aegyptiacus NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNN---NNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGGATCTGTGCCAATTAGAGTCTCCTCACCACCTCCCCTGTCCTTAG AATGTATATTCTGCCGACCCTTTCT-CCTTTAGGAGCTGTTTCA-GGCTATAACCGTG----AGATAGTATGGTCTTGTT GAGACC-TCTGGATTGAACATATGGCTGAACCCAGTTAAAGCTTCTATATAAACATGTAAGATTTTGGTAGGC---GGGT ATTCAGATCTA-TGCTTTTGCAGCTGCTCCAAACGAGCCTTGTATATAAATTCCC-TCACTTATTAAATCTACCACCT-- --------ACGAATCTAAAGTGGCCTGTCTT-----------------------TTTCTTTGGTCTCTCCTTGTCCTCTG TTTATAGGAGGCAAGTTTCAGATTTCACTTGGGAAGCTTGTGA---GCTCACAAACTAACA---AGAGCC---CTTTGCA AAATTGCTTTTC-------------CTGAATTGGGTTCTA-GTACTAT >Condylura_cristata GTATTCCTCGAAGAAGCTAAAACAACAGGAACCAGGTTAACTAATTCGTT---AGCACA--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------CCTTGCC A-TTGTTTTCCCCAGAATTGTCTTTCTGA----GGTACTGCCTACAAT >Erinaceus_europaeus ATATTCCTAGGAAAAGCTAAAATATAAAAAATCAAGTTA--------ATT------GTA--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------CTTTGAA AAATGGCTTCTCTTGAATGGTTGTTTTGAGCTGGACACTA-TTTTTAT >Homo_sapiens ATGTTCCTAGAAGAAGCCAAAGCAGCAGAAATCAGGTCATCTAGATCATT---AGCACC--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------CTTTGCA AAATTGCTTCTTCTGAATTGCTTTTCTGAATTGGGTTCTG-GTATGAT Dog15_LTR >MER57LA -------------------------------------------------------------TGTGTTAAAAGATAAACTG ----------AGGCATATTAAAAA-TTTTAAGAGTTTATTTGAGC-AAAAATCGATTCAAATCAGGCAGCACCAAACCAG GAAG----TGGTTAGGAGCGCTCCACCGACAGGAGCTAGGGGAAAGACTTTTATAGAGAAGAGGCAGAAGCAAAGCAAGG AAATTATTTGATTGGCT--------------ATAGCTTAAGCAGTTGCCTTATTTGGGAAAGCCTAGTTGGCTGTTTGTG -ATTGGTTGTCCTTAG-GTTTTGA--TTTCTTAACCTTGAGGCATTTACA-GGCTTAGGTTTTGGTTTGCTTAC-GTAGG CTG-CTAAGGCATTAGAACCAC------CTCAGTCTAATGGCCTCCTTGTTTAATTAATTTAACA--------------- ----------------------------------------------- >Canis_familiaris TGTATTAATTATATGTACCTCTGCAAAAAGATACAACTAAGAGACCTTTG---AA-GC-----TGCTAAAAGATAAACTG ----------AGGCATATTGAAAA-TGTTGAG-----TATTGAA--AAATGGTAATTGGAATCGGGCAGAGCCAACCCA- TAAG----TGGTTAGGAGCGCTCCACAGAGAGGAGCTCAGGGAAAAACTTTTATAGGGAAAAG-----------TTATGA AGATTAT-TGATTAGCT--------------ATAGCTCCA--------------------AGTATACTTGGCTGCTTGTG -ATGGATTGTCCTTGAGGTTTTGAT-TTTGTGA-TCTTGAGGCATT-ACA-GGCTTAGGTTTGGATTTGATTAC-TTAGG CCA-GGAGGGCATGAGAGCCAC------TTCAGTCTAATGGCCTCCTCGCTTAAATAATTTAACA---CAAC---TAAGC TCAACTT-AGTGGTGACTGTCAAAAGCCTTCCTGGAAAAT-ACTTTG >Felis_catus TTGTTAAATTATGCACACCTCCACAA--AAATACAACTCAGCGATCTTTG---AA-GC-----TGTTAAAAGATAAACTG ----------AGGCATATTAAAAA-TGTTGAG-----TTTTAAGC-AAAAGTGGATTGAAATGCACCAGTGCCAAGCCGT TAAG----TGGTTGGGAGCTCTCCACAGACAGGGGCTCG--GAAAGATTTTTATAGAGAGAAAGCAA------AGTAAGA AAATTGT-TGATTAGCTTATTAATATTATTGATAACTTAA--------------------AGTCTAGTTGGTCGTTTGTG -ATTGGTTGTCCGTAGGGTTTTGTTATTTGTGA-CCTTGG-----------GGCTTCGGTTTTGGCTTCATTAC-TTAAG CTC-CCAGGGCATGAGAGCCAC------TTCAGTCGAATGGCCTCCTTGTTTGATTAATTTAACG---CGGC---TAAAC TCAACTC-AGTCACGCCTGTCAAGAGCCTTCCTGGAAAAT-ACTTTG >Manis_pentadactyla TGGTTAAATCCTGCACACATCTGCAAAGAGATACAACTGAGAAGTCTTAA---AT-GC-----TGTTAAAACATAAAGG- ----------AGGCATGTTAAAAA-TTTTATGAGCTTAGTTGAGC-AAAAATCTATTGGAATCAGGCAGTGCCAAATGG- AAAG----TGGTTAGGAGCGCTCCACCAATAGGAGCC----GAGAGACTTTTACGGAGGAAAGGCAGAAGCACAGTGAGG ACATTAT-TTATTGGCT--------------GTAGTTTAA--------------------AGCCTAGTT----GCCTGGG -ACTGGTTGTCCTTAGCATTTTGAT-TTCACAA-CATTGAGGCATTTACA-------GGCTCTGGTTTACCTAC-GCAGG CTGCCCAGGGCATTACGGCCAC------CTCACTTTAAGGACATCCTAGCTTAATTAGTTTAACA---CAGC---AAAGC TCAACTC-AGCCATGCCTGCTAAGGGCCTTTCTGGAAAGT-ACTTTG >Sus_scrofa TGGTTAAATCATACACACCTCTGCCACAAGATACAACAAAGAGATCTCTG---CA-GC-----TATGAAAAAAAAGAAAG AAAAAAAAACAGGCCTATTAAAAT-TTTTAGGAGCTTATTTGAGC-AAAAATATATTGGAATCTGGCCATGCCAAACCA- GAAG----TGGTTACAATCACTCTACCCACAGAAGCTTG-GAAGAGAATTTTACAACGAAAAGGAAG------AGTAAAG AAATTAT-TGATTGGCT--------------ATGTCTTAA--------------------AGCCTAGTCAGCAGTTTGTG -ATTTGTTAACCTTAG--TTTTGAT-TTCATAA-CCCAGAGGTATTCACA-GGCTTAGGTTTGGGTTTGATGACATTAGG CTG-CCTGGGCATTAGAGACACCGCGGTCGCGGTCTCGTGGCCTCTGAACTTAATTCGCTTAACA---CAAT---TAAGC TGAACTC-AGTCATGCCTTTAAAGCCCCTTTCTTGCAAAT-ATTTTG >Tursiops_truncatus TGGTTAAATTATGCACACGTCTGCAAAAGGATACAACCAAGAGATCACTG---AA-GC-----TGTTAAAAGATAAAC-- ----------AGGTCTATTAAAAAATTTTAGGAGTTTATTTGAGC-AAAAATCGATTGGTATCTGGCAGTGCCAAACCA- GAAGGGGTTAGTTAGGAGCACTCCACCTACAGGAGCTCG-GGAGAGACTTTTATAGAGAAAAGGCAGAAGCAAAGTAAAG AAATTAT-TGACTGGCT--------------ATGGCTTAA--------------------AGCCTAGTTGGCAGTTTGTG AATGGGTTGTCCTTAGCATTTTGAT-TTCATAACCCTAGAGGCATTTATAGGGCTTAAGTTTTAGTTTGATGAC-CTCCG CTG-CCTGGGCACTAGAGCCAC------CTCAGTCCCATGGC--TCTTGCTTAATAATTT--ACA---CAAC---TAAGC TCGACTCAAGTTGTGCCTATCAGACCCTTTTCTTGANNNNNNNNNNN >Equus_caballus TGGTTAAATTATGCACATTTCTGCAAAGAGATACAACTAAGAGATCTTTG---AA-GC-----TGTTTAAAGATAAACTG ----------AGGCATATTGAAAA-TGTTAAGAGTTTATTTGAGC-AAAAATCAATTGGAAT-GGACAGCACCAAACGA- GAAG----TGGTTGGGAGTGCTCCACTGATAGGAGCTCGCAGAGAGACTTTTGTAGAGAAAAGGCAGAAGCAAAGTAAGG GAATTAT-TGATTGGCT--------------ATCGTTGAA--------------------AGCCTAGTTGGCTGTTTGTG -ATTGGTTGTCTTTAGCATTTTGGT-TTTTTTACCCTTGAGGCATTTACA-GGCTTAGATTTTAGTTTGATCCC-TTAGG CTG-CCAAGGCATTAGAACCAC------TTGAGTCTAATGGTCTCCCTGCTTAATTAGTTAAATA---CAAC---TAAGC TCAACAC-AGCCATACCTGTCAAGGGCTTTTCTGGAAAAT-ATTTTG >Ceratotherium_simum TGGTTAAATAATGCACATTTCTGCAAAGATATACAACTAAGAGATCTTTG---AA-GC-----TGTTTAAAGATAAATTG ----------AGGCAAATCAAAAA-TTTTAGGAATGTATTTGAACAAAAAATCAGTTGGAAT-GGGCAGCTCCAAACCG- GAAA----TGGTTAGGAGTGCTCCATAGACAGGAGCTTGGGGAGACATTTTGGTAGAGAAAAGGCAGAAGCAAAGTAAGG AAATGAT-CGATTGGCT--------------ACAGCTTAA--------------------GGCCTAGTTGGCTGCTTGTG -ATTGGTTGTCCTTAGCATTTTGGT-TTTGTGA-CCTTGAGACATTTACA-GGCTTAGGTTTTGGTATGACTAC-TTAGA CTG-CCAAGGCATTAGAGCCAC------CTCAGTCCAACGGCCTCCTTGTTTAATTAATTTA------------------ --AGCTC-CGTCATGCCTGTCAAGGGCTTTTCTGGAAAAT-ACTTTG >Myotis_myotis AGGTTAAATCATGCACACCTCTGCAAAGAGATACAACTAAGGGATCTTTG---CA-GC---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------TAATC TCAACTC-AGTCATGCCTGTCAAGGGCCTTTCTGGAAAAT-ACTTTG >Rousettus_aegyptiacus GGTATCAATTATGCACATCTCTGCAAAGAGCTACAACTAAGGGATCTTTG---TA-GC---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------TAATC TCAAGGC-AATCATGCCCGTCAAAAGCCTTTCTGGAAAAT-TCTTTG >Condylura_cristata AGGTTAAGTGATGCACACCTCTTCCAAGACAGAAAGCTAAGAGATCAATT---TA-AC---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------TAAGC TCAAATC-AGCCATGCCTATCAAGGGTCTTTCTGGAAAAT-GCTTTA >Sorex_araneus TGGTTAAATAATGAGCATCTCCACACTGATACACAACTAGAAGATCTTTG---CAGGA---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------TATGC TCAATTG-AGTCAAGCCTCTTAAGAAACTTTCTAGAAAATAATTTTG >Homo_sapiens TGGATAAATTATCCAAACCTCTGCAAAGGGGTACAATCAAGACGTCTTCA---TA-GC---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------TAAGC TCAACTC-GATGATGCCTGGTAATGGAGTATCTGGGAAAT-ACTTTA Dog16_LTR >ERV54-EC_LTR ----------------------------------------------------------------------TGTTAAAAAC AAG-ACAACAGGCCCAAAATGGAGTCACTTATGCTAAGC----------------------------------------- -----------------------------------------------------------CCCACGTCACCAAACCGAGAC -------------TTAACTTAATTACAGTTTCGGC----------TCTCCCAGAAATGGAATCTTAAACCAGTCAATCAG GAATCACCTGATCAGCACTAGTTAGGTAATCTGCCTGATAGACCCCTGCCATCCCCTAAAGGAAAGTAACCTTGCAATAA CCAATCCACTTTTTTGCCTAGTATAACTTCCTTGTTCCTGCTCCCTTCTGCCTATAAAAGTCTTTCATTT-----TGTAC AGCTCCTCGGAGCTCCTTTCT----ATCTGCTAGATTGGATGCTGCCCAATTCATGAATCATTGAATAAAGCCAATAAGA TCTTTA-------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AA ATTTACTCAGTTGAATTTTG---TTTTTTAACA----------------------------------------------- ---------------------- >Canis_familiaris TTTAAGGAAAAAAAACACAACTGTACTCTATCATAAGGCCGAAATGGCTTTTTGCTAAAT---CAGT---TGTTAAAAAC AAG-ACAACAGGCTCAAAATGGAGTCACTTATGCTAAGC----------------------------------------- -----------------------------------------------------------TCCACATCACCAAATACAG-- ----------------CCTTAATTACACTTTTGGCC---------TCACCCAGAAATGGAATCTTGGAAC-GTCCGTCAA GAACTACCTTATTAGCACTAGTGAGGTCATCTGCCTGACAGACCACCCCCATCCCCTAAATGAAAGTGATCTTGCCACAA CCCATCCACTTTTTG--------------CCTTTTTCCCACTCCCTTCTGCCCATGGAAGGCTTTCATTT-----GGTAC AGCTTTTTGAAACTCCTTTCT----ATCTGCTAGATGGGATGCTGCTAGAATCACGAATCATTAAATAAAGCCAGTAAGA TCTTTA-------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AC ATTTACCCCATGGCATTTTG---CGTTTTAATA---TTTT---GAATTTCT----------------------------- -------------------TCA >Felis_catus GTATAGAAAAAAAA----AATTATATTCTACCA-AAGGCAGAAACAGCTTTTAGCTAAAT---CAAT---TGTTAAAAAC AAG-ACCACAGGCTCAAAATGGAGTCACTTAAGCTCAGC----------------------------------------- -----------------------------------------------------------TCCATATCACCAAACTGAG-- ----------------ACTTAATTACACTTTTGACC---------TCTTCCAGAAATGGAATCTTAA---AGTGAATCAG GAACTACCTGATCAGCATGAGTGAGGTCATCTGCCTGATAGACCCCTGCCATCCCATAAAGGAAAGTGGTCTTCCCACAA CCATTCCACTTTTTG--GCAGTATAATTTCCTTGTTCCCACTCCCTTCCGCCTATAGAAGTCTTTCATTT-----TGTAC AGCTTTTGGAAGCTCCCTTCT----GTCTGCTAGGTAGGATGCTGCTCGAGTCATGAATCATTAAATAAAGCCAGTAAGG TCTTCAATTTTTTTAACCTTTATTTATTTTTGAGAGAGAGAGAAAGTATGAGCAGGGAGGGGCGGAGAAAGAGAGGGAGA CACAGAATCTGAAGCAGGATCCAGGCTCCCCACTGTCAGCACAGAGCCTCATTCAGGGCTCAAACTGGAACTCTCCAACG GTGAGATCATGACCTGAGCCTAAGTCCGATGCTTAACTGACTGAGCCACCCAGGCGCCCCAAGCCAATAAAATCTTTCAA ATTTACTCAGTTGAATTTCG-------TTAATA---CATT---GAATTTCTTCGGTTATTAA--GTTATCT-------GG AATGAAACTTC--TTTTTCTCA >Manis_pentadactyla TTAAGAAAAAAACA--------CTATTTTACCATAAAGCAGAAGGGGCTTTTTGCTAACT---CAAT---TGTTAAAAAC AAG-ACAATTGGCCCAAAATGGAGTCACTTATGCTAAGC----------------------------------------- -----------------------------------------------------------CCCACGTCACAAAAGGGAGCT -------------TTACCTTAATTTCACTTTTGTCC---------TCTCCCAGAAATGGAATCTTAAGTCAGTAGATCAG GAACTACC------------GTGAGGTA---TTGCTGATAAACCCCTGCTATCCCTTAAAGGAAAGTGACCTAGCCACTA CCAATCCACACTGTG--CTAGTACAACTTCTTCA-TCCTGCTCCCTTCCACCTAGAAAAGTCTTTCATTT-----TGTAC AGCTCCTTGGAGCTCCTTTCTAGTAAACAGCTGGATAGGATGCTGCCAGGTTCATGGATCGTTGAATAAAGCCAATATGA TCTTTA-------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AA ATTTACTCAGTTGAATTTTGTTTTTTTTTAACA---CTTT---GAATTTCTTTGGTTATTAAAAGCTTTCT-------GG GATGAAACTTC--TTTTTCTCA >Sus_scrofa TTAAGAAATA---------------------------GCAGAAAGAGCTTTTTGCTAAAT---AACT---TGTTAAAAAT AAGAAAAATAGGCCCAAAATGGAATCACTTATGCT--------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------TCTCTCAGAAACAGAATCTTAACCTAATCAATTGG GAATCA-CTGATCAGCACTAGTGAGGTAATCTGCCTGAAAGACCTCTGCCATCCCCTAAAGAAAAGTGACCTTGCCACAA CCAATCCACTTTCTG--CTTGTATAACTTCCTTG-TCCCACTCCCTTCTGCATGTAT--GTCTTTAATTT-----TGCAT AGCTCCTTGGAACTCCTTTCT----AACTGCTAGATGGACTGCTACCTGATTCACAAATCCTTGTATAAAGCAAATAAGG TCTTTA-------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AA ATTTACTCAATTAAATTTTGTT-TTTTTTAACA---CTTT---GAATTTCCTTGGTTGTTAATAGATTTCTTAAAAAAGA AAAAAAAAGAAAATTCTTTTTC >Bos_taurus TTAAGAAAAAA-------------GTTCTACAATAA-GTGAAAAGAGCGTCTGGCTAAGT---CAAT---TGTTAAGAGC AAG-ACAACAAGCCCGAATTGGAATCACTTATGCAGACCTGGGTTCAACCCCTGGGTCAGGAAGATCCCCTGGAGAAGGA AATGGCAACCCACTCTTACCTGGAAAATCCCATGGTCAGAGGAGCCTGGTAGGTTACAGTCCATGGGGTCAAAAAGAGTC GGACACGGCTGAGTGACTTCACTTTCACCTTTCACCTTTCATGCTTCTCCCAGAAATGAAATGTTAACCTAATCAATCAG GAATCTCCTGATCAGCACTAGTGAGACAACCTGCCTGATAGAGACCTGCCATCCTTTAAAGAAAAGTGACCTTGCCACAA TCAATCCACTTTTTG--CTAGTATAATTTCCCTG-TCCCACTGCCTTTTGCCTATATCAGTCTTTAAACTTTGTATGGAT AGCTCTCTGGAGTTCCTTTCT----ATATGCTAGATGGGAGGCTGCCTGATTCATGAATCAATAAATGAAGCCAATAAGA CTTTAA-------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AA ATTTACTCAGTTGAATTTTA--------TAACA---CATT---GAATTTCTTTGATTGTTAAAAGTTTTCT-------GG AATAAAACTTC--ATTTTCTTA >Myotis_myotis TTAAGAAGAAAAGT---------GACTCTGCTACAAGGCAGAAAGAACTTCTTGCTAAAC---CAGT---TGTTAAAAGC AAG-ACAACAGGCCCCACATGGAGCAACTTATGGGAAGT----------------------------------------- -----------------------------------------------------------CCCATGTCACCAAAAGGAG-- ------------------ACAATCACACCTGCAGCC---------TCTCCCGGAAATGGGAGGGTAAACCAGTCAGTGAG GAGCAGCCTGGCCAGCACT-GTGAGGGCATCTGTC---------------ATCCCC--GAGGAAAGTGTCCTGGGCACTG -CAGTCCAAGCTCTG---CTATAGGACTTCCTTGTTCCCACCTCCTTCTGCCCAGAACAGTCTCTCATT------GGCAC AGCTCCTCGGAGCTCCCTTCT----ATTGGCTGGATGGGATGCTGCCAGAGCCATGAATCACTGAATAAAGCCAATA--- TCTTTA-------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AA ATGTACTCAGTCCAATTCTGG--TTTTTTAACA---C-TT---GAATTTCTTTGGCTCTTAAATGTTTTCT-------GG AATGAAACTTCTTTTTTTCTCA >Rousettus_aegyptiacus TTAAGAAGAAAA---------TGTATTCT-CCATAAGGCGGAGAGAGCTTTCCGCTAAAT---CAGT---TGCTAAAAAC AAG-ACAACGGGCCCCAAATCGAGTC------------------------------------------------------ ------------------------------------------------------------CCATGCCACCAAAAGGAG-- --------------------AATTACACTTACGACC---------TCTCCCAGAAATGGAATCTTAAACCAGTCGGTCAG GAGCCACCTGATCAGCACCAGCGAGG---------------------------CCCTAACAGAAAGTGACCTCGCCACAG GTGACACACCTTCTG---------CATCTCCCCG-TCCTGGCCACTTTGGCCTAGGACAGGGTTTCACTT-----CGCAC TGCGCCTCGGGGCTCCTTGCT----CCCTGCTGTATGGGGTGCTGCCCGGCTCAGGAATCGTTGAATAAAGCCAGTAAGA TCTTTC-------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------GA ATTTGCTCAGTTGAATTTTG---TTTTCTAACA---CATT---GAACTGCTCTGGACATTAA--GTTTTCT-------GG AATGAAACTTC--------TCA >Equus_caballus TTAAGAAAAAAA---------TGTATGCTATTATAAGGCAGAAAGAGCTTTTCGCTAAAC---CATT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------GAATTTCTCTGGTTGTGAGAAGTTTTCT-------GG AATGAAACTTC--TTTTTCTCG >Ceratotherium_simum TTAAGAAAAAAA---------TGTATTCTACTATAAGGCAGAAAGAGCCTTTTGCTAAAC---CATT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------GAATTTCTCCAGCTGTTAGAAGTTTTCT-------GG AATGAAACTTC--TTTCTCTCG >Condylura_cristata TTAGAAAATAA----------CTTATTCTGTCATAAGACAGGAAATGTTTTTTTCTAAAT---TATT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------CAATTTCTCAGGTTATTAAA-ATTTTCT-------GG AATGAAACTTC--------TCA >Sorex_araneus TTAAAAAAAAA-----------------------AAAGCAGGAAAAGCTTTTTGTCAACT---CATT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------AAATTTTCTGAGTTTTCAAAAGTTTTCT-------GA AATGAAATTTC--TTTTTCTCA >Homo_sapiens TTAAGAAAAAA----------TGTATTCTACCATAAGGCAGAAGCAGCTTTTTGCTAAGT---CATT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------GAATTTCTCTGGTTGTTAAAAGTTTTCT-------AC AATGACACTAC--TTTTTCTCA Dog17_LTR >MER57LA -----------------------------------------------------------------------------TGT TAAATTAATTAAACAAGGAGGCCATTAGACTGAGGTGGTTCTAATGCCTTAGCAGCCTACGTAAGCAAACCAAAACCTAA GCCTGTAAATGCCTCAAGGTTAAGAAATCAAAAC-CTAAGGACAACCAATCACAAACAGCCAACTAGGCTTTCCCAAATA AGGCAACTGCTTAAGCTAT------AGCCAATCA---AATAA--------------------------------TTTCCT TGCTTT---------GCTTCTGCCTCTTCTCTATAAA-----AGTCTTTCCCCT-----------AGCTCCTGTCGGTGG AGCGCTCCTAACCACT----------------------TCCTGGTTTGGTGCTGCC---TGATTTGAATCGATTTTTGCT CAAATAAACTCTTAAAATTTTTAATA-------------------------------------------------TGCCT CAGTTTATCTTTTAACACA------------------------------------------------------------- -- >Canis_familiaris AAGTCTGTT------G-TTTTG-AAATCTTCAAGTATTCAATTTAGA-AAAAATTATTGTTTGACA---AGAAT---TGT GAAGTTAATCAAACAAGGAGGCCATTAGATTGAAGTGGCTCTTATACCATGGAGTTGTGTGTAAGCAAACCCAAATCTAA ACCTG-AGATCCTTCAAGGTGATAGAATCAAAATGCTAAGGACAATTAATTACAAAGAGCCAATTAGACT---------- ----------TTAAGCTAT------AACCAAACA---AATAG-------------------------CTTCTTTTTCCCC CTTTTT----------CTTCTGTACTTTGTCTATACA-----AGTCTTTTACCT-----------GGCTCCTGTCCTCAG AACACTCCAAACCACT----------------------T-CTGGTCTAATATTGCC---CAATTCAAATAGAATTTTACT CAAATAAAG--TTAAAATTTTTAATA-------------------------------------------------TGCCT CAAATTATCTTTTAAT-------ATCAT---GAAATAC-AGAATGTATTTTAAAGGCATATTAAATTTTATTCCAAATGA AG >Felis_catus AAGTTTGCT------G-TTTTATAAATCTTCAAGCATTCAGTTTAGATTAAGTTTATTGTTTGATG---AGAAT---TGT GAAGTTAATTAAATAAGGAGATTCTTAGATGAAAGTAGCTCTAATGCCAGGGAGGTCTGTGTAAGCAAACCCAAATCTAA AGCTGGAGGTCCTTCAAGGTTACAGAATCAAAATGCTAAGGACAACCAATTACAAACAGCCAATGAGGTT---------- ----------TTAAGCTCT------TGCCAATCAGCCAATCAAATGCTGCTGCTGCTGCTGCTGCTGCTTCCCCTTCCCC CTCTCTTCTCTTATTGCTTCTGCACTT----TATACA-----AGTCTTTTAACT-----------GGCTCCTGTCCTTGG AACACTCATAACCATT----------------------T-CTGGTTTTATGCTGCC---TAATTCAAACAGGTTTTC--- --AATAAACTCTTAAAACTTTTAATTTTTTTTAATGTTTATTTATTTTTGAGACAGAGAGACAGAGCATGAACGGNNNNN NNNNNNNNNNNNNNNN-------NNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NN >Manis_pentadactyla AAGTCTGCT------G-TTTAATAAATCTTCAGGTATTTAATTTAAA-TAAGTATATTATTTGAGG---AGGAT---TGT GAA--TGAACAAAGGAGAAGGCCATTAGATTAAAGTGGCTCTAATGCCA-GGAGGTCTACATAAGCAAACCAGAATCTAA GCCTGGAAATGCCTCA--GTTGTGAAATC-AAATGCTGTGGA-AACCAATCATAAACAGCCAACTGGGCT---------- ----------TTAATCTGT------AGCCATTGA---AATAA--------------------------------TTTCTT TTTTTA--------TGCTCTTGCACTTGCTCTGCATA-----AGTTTTTTGCCT-----------GGCTCCTGTCCTCAG AATGCGCCTAATCACT----------------------T-CTGGTTGGGT-CTGCA---TAATTCAAATCAATTTTTGCT CAAA-------CTTAAATTGTTAATA-------------------------------------------------TGCCT CAGTTTACCTTTTAAC-------AGGGT---GAAATACAAAAATGTATTCTAGGCGTATATTAAATTTTATCCCAAATGA AG >Equus_caballus AAGTCTGCT------G-TTTTATAAATC---AAGTGTTCAATTTAGA-TAAGTTTATTGTTTGAAG---AGAAT---TAT TAAGTTAATTAAACAAGGCGGCCATTAGATTGAAGTGTCTCTAAAGCCGTGGAGGTCTACATAAGCAAACCAAAATCTAA GACTGGAAATGCTTCAAAGTTACAAAACCAAAATGCTAAGGACAATCAATCACAAGTAGCCAACTAGGCT---------- ----------TTAAACTAA------GGTCAATCA---AATAA-------------------------------TTTTCCT ATTTTT----------CTTCTGCACTTTCTCTATACATTGTCGGTCTTTCCCCC-----------GGCTCCTGTCCTCAG AATGTTCCTAACTACT----------------------T-CTGGTTTGGTGCTGCCAATTGATTCAAATTGACTTTTGCT CAAATAAACTCTTAAAATTTTTAATA-------------------------------------------------TGCCT CAGTTTATCTTTTAAC-------AGGGT---GACATAC-AAAATGCATTTTAGGTGTATATGAAATTTTATCCCAAATCA AG >Ceratotherium_simum AAGCCCGCT------G-CTTTACGAATCTTCAAGTATTCAATTTAGA-TAAGTTTATTGTTTGAAG---AGAAT---TAT TAAGTTAATTACACAAGGAGGCGATTAGATTGAAGTGGCTCTCAGGCTGTGGAGGTCTATGGAAGCAAACTAAAGTTT-- GACTGGAAATGCCTCCAAGTTACAAAATCAAAATGCTAAGGACAACCAATCACAAATAGCCAACTAGGCT---------- ----------TTAAGCTAT------AGCCAAT-A---AATAA--------------------------------TTTCCC TTTATT--------TGCTTCCACACTTTCTCCATACAGAATAAGTCTTTCACCT-----------GGCTCCTGTCCTCAG AATGCTCCTAATTACT----------------------T-CTGGTTTGGTGCTGCC---CAATTCAAATTGGTTTTTGCT CAAATAAACTCTTAACATTTTTAATA-------------------------------------------------CGCCT CAGTTTATCTTTTAAC-------AGGAT---GACATAC-AAAATGTATTTTAGGTGTATATTAAGTTTTATCCCAAATGA AG >Condylura_cristata AAGTCTGCT------G-CTTTATAACACTTCAAGCA-TCACTTTATG-TAAGTTTAATGTTTAAAG---AGAAT---TGT TAAATTAATTAAACAAAGAGGCTATTAGA------TGGCTCTAAAGCCACAGAAGCCTAAATAAATAAACAGGAATACAA ACCTGTAAATG-TTCAAGGTTATAAAATTAAAATGCTATGAACAGCACATT----------------GCT---------- ----------TTAAGCTAT------ACTACATCA---AGTGA--------------------------------TTTCCC TTTTTC--------TGTCTCTGAACTTTCTCTATGTAAGCCCCTCTTTTTATCTCTGAGGGATGGGGGTCAAGCCCCCAC CTTGACTCTAAGGGGTGGGGGTGTGGGAAGGGTGGGAGCACTGGCTTGCCACTGCC---CAATTTGAATTGATTCTTGGT CGAATAAAA-CTTAAAAAATTTAATA-------------------------------------------------TAACT CAATTTATCTGTTAAC-------AGGGA---GAAATCC-AAAGTGCATTTTTGGTGTATATTAAATTGTATCTCAAACTG AG >Sorex_araneus AAATATGCA------G-CTTTATAAAACTTTAAGAATTCACTTTAGA-TAAGCTTAATGTTTGAAG---AGATT---TGT -AATTAAATTAAA-----AGTCCATTAGA-----CTGGTTGTAGTGCCCTAGAGGTCTAAGTTAGCAAGCCCAAATCTAA GTCTGTAAA--CCTCAAGGTTA-GGAATCAAAACGCCAAGGGCAACCAATTAC----AGTCAACTAGTTT---------- ----------TTCTGTTTTGCATCAAATCAATCA---TGAA---------------------------------TTCTCC CACTTC---------------AAACTTATTTAAAAAAAT---AACCTTCCCTCA-----------AATTTTTTTC----- -------------ATT----------------------T-CAGGTTTGGCACTGAC---CAATTCAAATAGATTTTTGCG CAAATTTA---TTAAAACTTGTAATA-------------------------------------------------TGCCT T-GTTAGTCTTTTAAG-------AAAGT---GATATAT---ACACAACTTTAGCTGTATACTAAATTGCATTGGAAATGA AC >Sus_scrofa ATGCTTGCT------G-TTTTATAAATCTTCAT-TGTTGAATTTAGA-TGAGTTTAATGATTGAAG---AGGGA------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------AAAACACAAAAATGTAATTTAGATATATATTAAATTTTATCCCAAATGA AG >Bos_taurus AAGTTTACT------T-TTTTATATATCTTCAAATATTCAGTTTAGA-GAAGTTTAATATTTGAAA---AGGGA------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------AAAATAC-AAAATGTATTTTTGGTGTATATTAAATTTTATCCCAAATGA AG >Myotis_myotis AAGTCTACT------A-TTTCATAAATCTTAAAGTATTCCATTTTGA-TAAATTTAATGTT-AAAG---AAGGC------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------AAAATAC-AAAATATATTTGAGGTATATATTAAATTTTATACCAAATTC AG >Rousettus_aegyptiacus AAGTCTGCT------GTTTTTATAAATATTCAAGTATTCAATTTATA-TAAGTTTAATGTTTAAAG---AGGTC------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------AAAATGC-AAAATATA-TTAAGGTGTATATTAAATTTTATCCCAAGTGC AG >Homo_sapiens ATGTTTGCTCTTTCAG-TTTTATAAATCTTCATGTATT-----------------------TGAAG---AAGGT------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------AAGATAT-TAAATGTATTTTAGTTGTATATTAAATTTTACCCCAAATGA CA Dog18_LINE >L1MA9_3END -----------------------------------------------------------------------GGAATCTAA AAAAGTCAAACTCATAGAAGCAGAGAGTAGAATGGTGGTTGCCAGGGGCTGGG-----GGGTGGGGG------------- ---AAATGGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCT----GGAGATCTAATGT -ACAGCATGGTGACTAT-----AGT---TAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAG--ATCTTAA GTGTTCTCACCACACA--CAAAAAA---ATGG-TAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAAT CATTTCACAATGTA------TACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATT ATACCTCAATAAAGCTGGAAAAA--------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------- >Canis_familiaris TAGAA-CAAAAAGT---GGTCTCTCCCCTTAGGAAATTTATTATCTAATT---AGGGAAGGAATATGTT----------- -AAGC-CAAATTCGTAGATACAGAGAACAGATTGGTGGTTGCCAGAGACAGG-------GATGGGTG------------- ---AAATGGGTGAAGG-GGGACAAAA-TTACAAACTTCCAGTTAT--AAAATAAATAAATAAGTCAGGGTGAGGTAATGT -CCAGCATGGTGACTATCTAGCAGT---TAA------TGTATTATAGATTTGAACATTGTTGAGAGAATAG--ATCTTAA AAGTTCTCATCAGAAG--AAAAAAA---TTCT----CTATGTGTAGTGGTGGA--ATTTAACTAGACTTAGTGTGGTGAT CATTTTGCAATACATATACACATAAATATCAAATCAATATGCGATATACCTGAAACTAATATCA-TGTTGTATGTCATTT TT--------------------------AAAAAGAATGTGTT-------------------------------------- ---------------------------------------------------------------------TATAACTAG-C AATAAGTAATACAAAGACTTTTTTAATGTTTTATTTATTTTTTTAAAGATTTATTTATTTATTTATCCATGATAGACAGA GAGAGAGAGAGAGAGGCAGAGACGCAGGAGGAGGAAGAAGCAGGCTCCATGAAGGGAGCCCAACGTAGGCCTCAATCCCG GGACTCCAGGATCACGCCCTGGGCCAAAGGCAGGCACTAAACTGCTGAGCCACCCAGGGATCCCTACAAAGACTTTTACA TATGATACTGAAACTTTAAAT >Felis_catus TAGAA-TAAAAAG------------CCCTTGAGGAGCTCGTTATCTAATC---AGACAAAGGATGTTTT----------- -AAAC-TAAGCTCATAGATGCAAAGAACAGATTGGTGGGTTCCAGAGGCAGGA------GTTGGGTG------------- ---ACATGGGTGAAGG-GAGCCAAAA-TTACAGACTTCCAGTTGT--AAGATAAATAAGTCA-----GGTGATT--ATGT -ACAGCACGGTGACTAG-----AGT---TAATAATACTATATTTCATATTTGAAAGGTGCTGAGAGAATAG--ATCTTTC AAGTTCTCGTCAAAAG-AAAAAAAA---TTCTACAACTATGCGTAGTGATGGG--TGTTAACTAGACTTACTGT-GTGAT CATTTTGCAAAATATATACATACAAATATCAAATCATTATGTTGTATACCTGAAACTAATATAA----TGTATGTCAATT ATACCTCAATTAA-------------AAAAAAAGAATGTGTT-------------------------------------- ---------------------------------------------------------------------TATAATTAG-C AACATG-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------AAAGGCCTTTAAA CAAGATACAGGAGCTTTAAAT >Manis_javanica TAGAA-TAAAAAGT---CATCTTCGCCCATAGGGAACTCATTATCTAATA---AAGGAAAGAATATGTT----------- -AAAC-CAAATTCGTAGATACAGAGAACAGATTGGTGGTTGTCAGAGGCAAGGGTTGAGGGTGGGCA------------- ---AAATACATGAAGG------------TATAAGCTTCCAGCTAT--AAAATAAAAAAGTTCT----GGGGATGTAATGT -ACAGCATGGCAGCTAT-----AATATATAATAATACTATATTGCATATTTTAAAATTGCTAAGAGAGCAA--ATCTTGA AATTTCCAATCACAAG-GAAAAAAAAGATTCCATAACTATGTATGATCATGGA--TTTTAACCAGACTTATTGTGGTGAT CATTTCACAAAATATACA------AATATCAAATCATTATATTGTACACATTAAACTATTATAA----TGTATGTCAATT ATACCTCAATTTTT------------TAAAATAGAAA--GTT-------------------------------------- ---------------------------------------------------------------------TATAATTAGGA AGT----------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------AGAGGCTTTTAAA AAAGATGCAAAAGCTTTAAAT >Sus_scrofa TAGTA-TAAAAAGT---CATCTTTACCCTTGGGGAACTCATTATGAAATT---AAGGAAGGAATGTGTT----------- -AAAC-CAAACTCAGAGATACAGAGAATAGACTGGTTGTTGGCAGAGGTGGGG----GCAGGGGATA------------- ---AAATAGGTAAAGG-CAGTCAAAACTTAGAAATTTCCAGATAT--AGGATAAATAAGTCCT----GGGGATGTAATGT CACAGCATGCT-----------AGT--------AAACCACATTGCCTATTGGAAAGTTGCTAAGGGAGTAGTAATTTTAG AAGTTCTA-CTACAAG-AAAAAAAA---TCCTATAAGTATGTATAGCGACAAA--TTTTAACTAAGCTTATGGTGATGAT CATTTTGCAGTATATGCA------AATATAAAATCATTGTGTTGTGCCCTTGAAACTAATGTAA----TGTATGACAATT ATACCACAACAAA-------------AAGT-------GTGTT-------------------------------------- ---------------------------------------------------------------------GATAATTAG-A AATGCA-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------AGAGGCCTTTAAA TAAGATTCAGAAATTTTGAAT >Tursiops_truncatus TAGAA-TAAAAAGT---GGTCTCTGCCCTTGGGGAACTTATTATGTTATT---AAGGAAAGAATGTGTT----------- -AAAC-CAAGCTCATAGATACAGAGAATAGATTGGCAGTTGGTAGAGGTGGGA--TGGGGGTGAGTAAATGGGGAGGGTG AGTAAATGGGTGAAAG-GAGTCAAAACTTACAAACTTCCAGTTAT--AGAATACAT-AGTCAT----GGGGATGTAGTGT CACAATGTGGTGACGAT-----AGG---TAGTAA-ACTGTGTTGCATACTTGAAAGCTGCTAAGAGAGTAGGAATCTTAG AAATTCTCATCACAAGAAAAAAAAG---TTCTGTAACTATGTGTGGTGACGAA--TGTTAACTAGGCTTATTGTGGTGAT TTTTTTGCAATATATAC-------AATATCAAATCATTATGTTTTACACCTGAAACTAATATAG----TGTATGTCAATC ATACTTCAGTAAA-------------AAC--------GTATT-------------------------------------- ---------------------------------------------------------------------TATAATTAG-A AATGTG-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------AGAGACCTTTAAA TAAGATTCAGAAACTTTGAAT >Equus_caballus TAGAA-TAAAAAGT---GGTCTCTGTCCTTGGAGAACTCGTTATCTAAGT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------AGGGAAAGAATGTGTT-------------------------------------- ---------------------------------------------------------------------TATAATTAG-A AATATG-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------AGAGGCCTTTAAA TAAAATTCAAAAACTTTAAAT >Ceratotherium_simum TAGAA-TAAAAAGT---AGTCTCTGCCTTTGGGGAACTCATTATTTAATT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------ATGGAAAGAATGTGTT-------------------------------------- ---------------------------------------------------------------------TATAATTAG-A AATATG-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------AGAGGCCTTTAAA TAAAATTCAGAAACTCCAAAT >Myotis_myotis TACAAATAAAAAGGAGAGGTCTGTGCCTTTGGGGAATTCATCATCTAATT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------AGGGAAAGAATGTATT-------------------------------------- ---------------------------------------------------------------------TATAATTAGAA AAAATG-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------AGAGACCTTTAAA TAAGATTCAGACACTTTAAAG >Rousettus_aegyptiacus TGAAA-TAAAATGT---GGTCTCTGGCCTTGGGGAACTCATTATCTAATT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------AGAGAAAGAATGTGTT-------------------------------------- ---------------------------------------------------------------------TATAATTAG-A AATATG-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------AGATGCCTTTAAA TAAGATTCAGAAACTTTAAAT >Condylura_cristata TAAAA-TAAAAAGT---GATCTCTGCCTTTAGGGAATTCATTGTCTAATT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------AGGAAAAGATTGTGTT-------------------------------------- ---------------------------------------------------------------------TGTAATCAG-A AATATG-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------AGAGGCCCTTAAA TGAGGTTCAGAAACTTTAGAT >Sorex_araneus TTGAG-TAAAAAGT---GATCTCTG-CCTTGGGGAACCCATTGCC-AATT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------AAAGAAAGAATTCTTT-------------------------------------- ---------------------------------------------------------------------TACAATCAG-A AATATA-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------AGAGAGTTTTAAA TAAGAGATAAAAATTTTAAAT >Ictidomys_tridecemlineatus TAGAA-TAGAAGGT---GGCCTCTGTCCTTGGAGATCTCAATATGTAATT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------AGGTAACATATGTTTT---TGTAGGACATGGGATGCTGCTCCACATCAGATGGT GGCTTAGCATACACAATACCCTAGGTTCAATCCCAGCACTACTCCCCAAAAAACTAAAGAGAATGTGTTTATAGTTAG-A AAT----------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------GGAGGATTTTAAA TCAATTTCAGAAACT--AGAT Dog18_LTR >CARLTR7 ---------------------------------------------------------------------------TGTAG GGGCCGAGGGCAGGCCGCCCCAAG--ATGGGCCACTTTGGCATGAAGATTATTTTGAGCTGAAGGCAATCGAGACCCTGC GGGCTCAAGAGAAAC-TTTTGCCCCTCCCTTAACTACATAGAAGAATCTAAATTGGGGG---TCTTTCCCAGAATAAGGG TTATTAGCAGAGATAA---ATTTTATCTGAGTGACCCATCTGTATGGCAGGGCAAACATCTAATTACCAA-ACATCTGCT CTTCTTATCGCCCTGTGAANTGCATTCCTTTCCTCTGAAGTCCCAGACCCCTACCCCCTTCTCCTTAGTTCAGGATGACA TATANACCTCATTTTGCCTGACTG-----TCTTTGGAATTTCCATGTCTGTGTGGATTCCCCGTACGTACGCTATTAAAT --------------TTGATTT----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------TCTCCTG TTAATCTGTCTCATGTCAATTTGATTCTTAGTCCAGCTAGAAGGACCTT-GAAGGGGA--CAGGAATTCTTG----CTCC CCGACA-------------------------------------------------------------------------- --------------- >Canis_familiaris CTAGGAGTAGAAGCAATATGTGCTATTTC------------TGTTCCAAGG---TTTTAGAGAAG---CAGG---TGAAG GGGAACAGAATATGCCACCTCAAA--GTGTGCCA-----GGATG-----------GAACTGAAGGCAATCAAGACCCACC AAAGTTGGGAAAAGC-TCTTACTTCCTCCTTAATTGTCTAAAGCAATTTAGAAAGGGG----CTTGTACCAGAAAGAGAG CTATTACAAGAGATCA-CTTTTTCATCTGAAAGGCTTATCTGCATGGTATGCCAAACATTTATTTATCAA-ACATTTGCT CTTCTCATCTTACTGTGAATTGTCTTGCTTCTCTTTGAAGCTCCAGATCCCTATTCCTTT--CCTTGGCTCAG------- ------CCTGTATT-GCCTTATTA-----TCTTTGAA--TAGCATA-TTTTATGGAGCTTTTGTATGTA-AAAATTAATT -----------------TTTT----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------TTCCCTG TTAATATGTTTCATGTTAATTAAATTATTAGACCAGCCA--AGAACCTA-GAAGGGTAGAGAGAAAAGTGTT-------- --------------------------------TTCCCTTCACCTTCTG-AAGACAGATACAAATAACCATGAGGCCTTAA GGGATGGTGGATCCA >Felis_catus ATATGAGCATAAGCAACATGTGCTATTTC------------TGTTCCAAGG---CTTTTAAGAAG---CAGG---TGAAG GGGAACAGAATCTGCCACCCCAACATGTGTGCCACCTTGGCATG-----------GATCTGAAGGCAATCAAGACCCATA GGACTCAGGAAAAGCTTTTAATCTCCCCCTTAATTGCCTAAAGTAATTTAGAGAGGGA---TCCTGTACCAGGAAGACTG CTATTACCAGAGATAA-ATTTTTCATCTGAAAGACTTATCTGCATGGCAAGGCAAACATTTATTTATCAA-ACATTTGCT TTTCTTATCTTCCTGTGAATTGTCTTGTTTCTCTTTGAAGCTCCGGCTCCC-------TT--CCTCAGCTCAG------- ------CCCCAATT-ACATGGTTG-----TCTTTGAG--TCCCATATTTTTATGCAGTTTTCATATGGACAAAGTTCGAT --------------CTGTTTTTTC-------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------TTTCCTG TTAATCTGTCTTATGTCAATTTAATTATCAGACCAGCCA--AGAATCTT-GAAAGGTAGAGAGAAAACTATTTTCCCTCC CCTACA---TGTA---TATGGACCCCACACATTTTCTTTCTCCTCATG-AAGACAGATACGAATGACAGTGAGGCCTTAA GGAATGGTGGATCAA >Manis_javanica ATATGAGTGGGAGCAATATGTGCTATTGCTAATAGCTACTATGCTCGAAGGCTTCTTTCTAGAAG---CAAT---TGAAG GAAAGCAAGATGCTCCACCCCCAA-----------GTTGGCATGCA---------GAGCTGAAGACAATCACGACTCAGA AGACTCAAGAAAG-CTTACTACCTCCC-GTTAAGTGCCTAAAATAACTTAGAAAGAGGG---CCTCTACCAGGAATAGAG CCATCGTCAAAGATAG-CTTTTCCATCTGAAAGACTTATCTGCATGGCAGAGCAAACATTTATTTACGAACACATTTGCT CTTCTGATCTTTCTGTGAATTGTCTTCCTTCTCTTTAAAGCCCAATA-TCGTATCTCTAT--CCTTAGCTAAGGATGGTA TGAAAACCTCAGTT-GACTGACTGACTGCCTTTTGAG--CTTCAAATTTTTATGAGGCTCCCATATGTACAAAATTAGAC --------------TAATTTT----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------TTTCCTG TTAATCTGTTTTGTGTCAGTTTAATTATCACACCAGCCA--ACAACTTA-GAAGGGCAGAGGGAAATTCTATTCCCTTTC CTTACA---CAAG---CATGCACCCTGTACTTTTCTTTGGCCCTTCTG-AAGACAGATGTAAACAACAGTGCACCCTTAA GGAATGGTGGATCCA >Sus_scrofa ATATGAATGGAAGCAATCTGTGTTATTTC------------TGTCCAAACA---CTTTTAAAAAG---CAGG---TGAAG GAGAGCAGATTATGCAACCCTGAT--AGGTGTCATTTTGGCATGTA---------GGACTGAAGGCAGTCAAGACCCAGC AGACTCAGGAAAATCTTCTTAACTCCCCTTTAACTGCTTGAAATAATTTTAAAAAGGAG---CCTTTACCAGGAAGAGCA GTATCAATACACATAA--CTTTTCATTTGAAAGACTTATCTGCATGGCAAGGTAAGCTTTTTTTAAAATAAATATTTGCT TTTTGCATCTTCCTGTGAATTGTCTT-CTTCCCCTTGAAGCCCCAGA-CCCTATCCCTTT--CCTTAGCTCAGTATGGCA TATAAACATCAATT-CTCTG---------TCTTCGAG--TCTCATATTTTTATGGGACTGCCATACATGCAAAATTAAAT --------------TTGTGTT----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------TCTCCTG CTAGTCTGCCTTATATCAATT-AATTATCAGACAAGGCA--AGAACCTA-GAGAGGCAGAATAAAAATTATTTTTCCTCC CCTACA---CAAG---TATGCAGGCTGCACC-TTGCTTTCCCCTTCTG-AAG--AGATGCAGATGACAGTGAGGTTTTAA AGG-CAGTACAGCCT >Bos_taurus ATATGAATGGAAGCAATGTGTGCTTTCTC------------TGCCCAAGGG---TTTTTAAAAAC---CAGG---TGAGG ---------------CACCCCAAA--GCATGCCATTTTGGCATATT---------GAACTGAAGGCAAACAAGACCCAGC AGATTCAGGAAAGTCTTCCTACCTCCC-CTTAACTGCCTAAAATAATTTAGAAAAGGGG---CCTGTACCAGGTAAAGTA GTAATAGCACAGATAA-CTTTTTCATCTGAAAGACTTAGATGCATGACA-AGCAAGCATTTATTTACTAA-ATATTTGCT TTTCTCATCTTCTTGTGGATCATCTGCTTTTTCTTGGATGTCCCAGATCCTTTTCC------TCTTAGCTCAAGATGGTA TTTAAGCCTCAATT-GCCTGATTC-----TCTTTGAG--TCTCATTTATTTGCAGGACAGCCA----TACAAAATTAAGT GTGTACTGCTCCTGTTGTTTTTGGTGGTTAGTCTCTAAGTCATGTCTGACTCTTGTGACCTCATAGACTGTAGCCCACTG GGTTCCTCTGTTCATGAGATTTCCCAGGCAAGAATACTGGAGTAGTTTGCCATTTCCTTCTCAAAGAGATCTTCCTGACC CAGGGATCAAAGCTGCATCTCCTGCATTGACAGATGAATTCTTTACCACTGAGCCACCAGGGAAGCACATGTTTCTCCTT TTATTCTACCTTATATCAATTTCATCATCAGACTGAGCA--AGAACCTA-CAAAGGCAGATGAAAAGTTACTTTTCCTCC CCTACA---TGGG---TATGCAGGTTGCACTTCCCTTTCCCCCTTCTG-AAGACAGATGCAATTGACAGCGAGGTCTTAA GGGGTGGTAGATCCA >Equus_caballus ATATGAGTAGAAGCAATGTGTGCTATTTC------------TGTTTCAAGG---CTTTTAAGAAG---TAGG---TGAAG GGGGGCAGAATACGCCACCTCAAA--ATGTGCCACATTGGCACGTG---------GAGCTGAAGACAATCAAGACCCAAC AGACTCAAGAGAAGCTTTTTACCTCCCTCTTAACAGCTTAAAATAATTTAGAAAGGGGG---TCTGTACCAGGAAGACAG CTACTACCTGAGATAA-CTGTTTTATCTGAAAGACTTATGTGCATGGCAGGGCAAACATTTATTTACCAA-ACATTTGCT TTTCTCATCCTT---------------CTTCTCAT--------------------------------------------- ------CATCAAAG-GCCTGACTG-----CCTTTGAG--TCACATATTTTTATGGGGCTCCTGTATGTACAAAATTAAAT --------------TTGTTTT----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------TGTCCTG TTAATCTGTCTTATGTCAACGTAATTATTAGGCCAGCCA--AGAACCTA-TAAAGGTAGAGGAAAAATTATTTTCTCTCC TCTAAA---CAGG---TATGCGCCCTGCACCTTTCCTTTTCCCTTCTG-AAGCCAGATGCAAATGACAATGAGGGCTTAA GGGATGGTGGATCCT >Ceratotherium_simum ATATGAGTAGAAGTAATATGTGCTATTTC------------TGTTTCGAGG---CTTTTAAGAAG---TAAG---TGAAG GGGGGCAGAATACACCACCCCAAA--ACGTGTCACATTGGCGTGTG---------GAGCTGAAGGCGATCAAGACCCAGC AGACTCAGGAGAAGCTTTTTACCTCCCTCTTAACT-CTTAAAATAATTTAGAAATAGGG---TCTGTACCAGGAAGAGAG CTATTACCAGAGAGAA-CTTTTT-ATCTGAAAGACTCATGTGCATGGCAGGGCAAACATTTACTTACCAA-ACATTTGCT TTTCTCATCTTCCTGTGAATTGCCTTCCTACTCTTTGAAGCCCCAGACCCCTATCCTTTT--CCCTAGCTCAGGATGGTA TATAAGCCTCAATT-GTCTGACTG-----CCTTTGAG--TCTCGTATTTTTATGGGGCTCCCATACATACAAAATTAAAT --------------TTGTTTT----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------TGTCCTG TTAATCTGTCTTATGTCAATTTAATTATTAGACCAGCCA--AGAACCTA-GAAGGGTAGAGGGAAAATTATTTTCTCTCC TCTAGA---CAGG---TATGCAACCTACACCTTTCCTTTCCCCTTCTG-AAAACAGATGCAAATGACAATGAGGGCTTAC AGAATAGTGGATCCA >Myotis_myotis ATATGAATGGAAGCAATCTGTGCTATTTC------------TGTTCCAAGG---CTTTTAAGAAT---CAGG---TGAAG GGGGA-GGAACATACCACCTCAAA---GGTGCCACTTTGGCATGTG---------GAGATAAAGGCAATCAAGCCCCAGA AGATTCAGGAAAGGATTTTTACCTTC-CCTTCATTGCCTGAAAGAATTTAGAAAGGGGCCTGCCTGTACCAGAAAGAGGG CTATTGTCAGAGAAAACCCTTTTCACCTGCAAGATGGATCTGCCTGGCAGGGCAAACATTTCTTTACCAA-ACATTTGCT CTCCTCACTTTCCTGTGAATCGTCTCCCTCCCCTTGGCAATCCCAGGTCCCTATCCTTTT--CCTTAGCTCAGGTAGTTT TATAAACCTCAATT-GCCTG----------CTTTGAG--TCTCATCTTTTTATGGGGCTCTCATATGTATGAAATTAAAT ----------------GTTTT----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------TCTCCTG TTAATTTGTTGTATATCCATTTAATTATTAGACTAACCA--AGAACCTAGGAAGGGTAGAGGGAAAATTATTTCCTCTCC CCTACA---CAAG---TATGTCTCCTGCACCTTTCTGTTCTCCTTCTG-AAAACAGATCCA-ATGACAATGAGACCCTAA GCGATGGTGGATCCA >Rousettus_aegyptiacus ATATGAGGGGAAGCAATATGTGCTATTTC------------TGTTCCAAGG---CTTTGAAGAAG---CAGG---CAATG GAGAAAAGAACATGCCACCTCCAAA-ATGTGCTACTTT-GCATGTG---------GAGCTAAAGACAATCAAGACTCAGC GGACTCACAAAAGGCTTTAAATCTTCCCCTTAACTCCCTAAATGAATTAGGAAAGGAGT---TTTGTACCAGGAACAAAG CTATTACTAGAGTTAA-CTTTTTCATCTGAAAGGCTTATCTGCATAGCAGGGCAAACATTTATTTACCAA-ATATTTTCT CTTCTCATCTTCCTGTGAATTGTCTCCTTCCCCTTTTAAGCCCCAGACTCCTGTCCCTTT--TCTTAGTTCAGAATGGTA CATAAACCTCAATT-GCCTGACTG-----CTTTTGGG--TCTCATATTTTTACGGGACTCCTGTATGTATGAAATTAAAT --------------TTGTTTT----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------TCTCTTG TTAATTTGTTTTATATAAATTTAAT----AGACCAACCG--AGAACCTA-GAATGGTTGAGGAAAA-TTATTTTTCCTTC CCTACA---CAAG---TATGTTCCTTGCACCTTTCCTTTTCCCTTCTG-A--ACAGACACAAATGACAATGAGCCCTTAA GCAATGGTGGATCCA >Condylura_cristata ATATGAGTGTAAGTGGAATGCACTAATTC------------TGTTCCAAGG---CTTTTAAG------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----TGGTGGCCCCA >Sorex_araneus AAATGTGTGAAAGTAGTACGCATTACATC------------TGTCCTAAAG---CTTT-AAGAGG---CAGG-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------TGTTTTCCTTGTACTTTTTATTCCCCCTTCCCAAAGGTAGATGAGAACAACAATCGGG--TTAA TAAGTAGTGGGTCCA >Homo_sapiens ATGTGAGTGAAACTGATATGTGCTATTTC------------TGTTTCAAAG---CTTTTAAGAAG---CAGG-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------CATGCAATATGCTCCATCCCCTTCCCCTTTTGTAAAATAGATCCAAATGA---TGAGGTCTTAA GGGATGGTGGATCCA Dog22_LTR >MER57LA -------------------------------------------------------------------------------- -----------------------------TGTGTTAAAAGATAAACTGAGGCATATTAAAAATTTTAAGAGTTTATTTGA GCAAAAATCGATTCAAATCAGGCAGCACCAAACCAGGAAGTGGTTAGGAGCGCTCCACCGACAGGAGC-TAGGGGA-AAG ACTTTT---ATAGAGAAGAGGCAGAAG---------------------------------------------------CA AAGCAAGGAAATTATTTGATTGGCTATAGCTTAAGCAGTTGCCTTATTTGGGAAAGCCTAGTTGGCT-----GTTTGTGA TTGGTTGTCCTTAGGTTTTGATTTCTTAACCTTGAGGCATTTACAGGCTTAGGTTTTGGTTTGCTTACGTAGGCTGCTAA GGCATTAGAACCACCTCAGTCTAATGGCCTCCTTGTTTAATTAATTT-AACA---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------ >Canis_familiaris TAACAACTT----TTCATCCATCTTCTGAAGCACTTTTG--CTT----------TAAAAATGCTGCTTTCA--------- --TAAACCACGTGGAGAG---CAGCT-----TGTACAAATACCAACTGAGGCATATGACAAACGTTAAGAGTGTATTTGA GCAAAAGTTCATTCAAATGGGAACACACAAAACCAG-AAGTGGTTAGGAGCAATCCATTAACAGGTGT-TGGGGAAAGTG ACCCGGGAGAGAGAGAAAAGGAGGAAG----------------------------------------------------- TAGTTAGGAAACTATT-GATTAGCCATGGCTTAC--------------------AGCTTTGTCGGCC-----CCTTATGA CTGGTTGTCCTCGGGTGTCAATTTCA---CCTTGAGGCATTTACCGGCTTAAGATATGGTTTG-TGATGTAGGCTGCCAT GAGATTAGAGCCACCTGAGTCTAACAGCTTCCTTGTTTAATTAATTT-AATT---GTAG---GTTAGTAGACAACTAGGT C--TATCAATAAATGA---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AT CTGCATATTGTCTGGCTTTTTATT >Felis_catus TAACAAATT----TTTATCCCATTTCCGAAGTACTTTTG--TTT----------GAAAGATGCTGCTTTCA--------- --TACAATAC----GTAG---ATAG------TGTTCAAATATCAACCAACG-----------CCTAAAGAGTTTATTGGA GCGAAAGTCCATTCTGATGGGGATACACCAAACCAG-AAGTGGTTACGAACAGTCCATTAACAGC----TGGAGA--GAC ACTTTG---GTATAGAAAAGGAGGAAG---------------------------------------------------CA AAGTAAGGAAATCATT-GACTGGCTACAGCTTAA--------------------AGCCTGGTTAGCT-----GCTTGTGA CTCGTGGTCCTCAGGTTCCAATTTCATAACTTCGAGGCATTTACAGGCTTA-------------TGATGTAGGCCGCCAG GACAGAAGAGTCACCTCAGTCTAATGGCCTCCTTGTTTAATTAACTT-AA------GAG---GTTAGTGGCTAACTAGGT C--CATCGACAAATGA---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AT CTGGACATTGTCTGGCTTTTTATT >Sus_scrofa TAACCATTT----TTAAGCCAATTTCTGAAGCATTTTTGTTTTTTTTTTTTTTTTAAAAATGCTGCCTTCT--------- --TACTCTTGGTAGGTAA---CTAG------TGTTCAAAGATAAACTAAAGCAGAGAAAAA-------GAGTTTCTTTGA TCAAAAATCAACTCAAACGGGGCAGCACAAAACAGG-AA------------CAACCAGTGGAAGAGTC-TGGAGA--GAG ACTTT----ATAGAGAAAAAGTGAAAGCAAAGTAAGGACTTTGTTTTGTTTTGTTTTCTCAGGCTGCACCTGCAACAACA AAGTAAGGAAATTATT-GATAGGTTGTAGATTGA--------------------AGCCTAGCTGGCT-----GCCTATGC TTGGTTGTCCTTAGGTGTTAATTCCACAACCTTGAGGCATTTACAGGCTTAGGTTTTGGTTTG-TTACACAAGCC-CTGG GGCAGTAAAGCCACCTCCATCTCATGGCCTCCTTGTTTAATGAATAT-GACA---GTAG---ATTAGTAAATAAGAAGGT C--CACTGACAAATAT---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AT CTGGGTATGGTCTGGCTCTTCCTT >Bos_taurus AAAAAGTTT----TTT---------------------TTTTTTT----------TAAAGTTGCTTCT------------- --TATACTAGGTGAGTGG---GTAG------TGTTCAAAGATAAACTGAAGCATTAAAAAAATTTTAAGAGTTTATTTAA TCAAGAGTCAACTCATATAGGACGAT--------------------------ATTTACTGGCAGGAGC-TGAGGA--GAG ACTTTC---ATAGAGAAAAAGTAGAAA---------------------------------------------------CA AAATAAGGAGATTACT-GATTGG-------TTGA--------------------AGCCCAGCAAGTT-----GTTTGTGA TTGGTTGGTGTTAGGTGTCAATTTCATAACCCTGAGGCATGTGCAGGTTTGGCTTTGGGTTCG-CTACACAGGCCACTAG GGCATCAGCGCCACCTCAGTCTCATGGCCTCCTTGTTTAATTAACAT-GACA---GTTG---CGTAGTGGGTAAGTAGGT C--CATGAATAAGTGAA--------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AT TTGGGTATGATCTGGTTCTTTATT >Equus_caballus TAACAACTT----TTCATCCAATTTCTGAAGCATTTTTG--TTT----------AAAAAATGCT---TTCT--------- --CACACTAGGTGGATAG---GTAA------TGTTCAAAGGGAAACTGAGGCATCTTAAAAATGTTAAGAGTTTGTTTGT GCAAAAGTCCACTAGAATGGGGCAGCGCCAAATCGG-AAGCGCTGAGGAGGGATCCACTGACAGGAGCGCAAGGA--GAG ACTTTT---ATAGAGAAAAGCAG-------------------------------------------------------CA AAGTAAGGAAATTACT-GATTGGCTGTAGCTCAA--------------------GGCCTAGTTGGCT-----GTTTGTGA TTGGTTGTCCTCAGGTTTCGATTTCATAACCTTGAGGCATTTACAGGCTTAGATTTTGGTTTG-TTATGTAGGTCACTAG GGCATTAGAACCCCCTCAGTCTAATGGCCTCCTGATTTAATTAATTT-AACA---GTAG---ATTAGTGCACAAGTAGGT C--TGTCAAAAAATGA---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AT CTTGATATTGTCTGGCTTTTTGTT >Ceratotherium_simum TAACAACTT----TTTATGCAACATCTGAAGCATTTTTG--TTT----------AAAACATGCTGCTTTCT--------- --TACAATAAGTGGATAG---GTAG------TGTTAAAAGGTAAACTGAGGCATATTAAAAATGTTATGAGTTTATTCGA GCAAAAGTCCATTTGAATGGGGCAGCACCAGACGGG-AAGTGGTTAGGAGCCATTCACCAACAGGAGCTCAGGGA--GAG ACTTTT---ACAGAGGAAAGAAG-------------------------------------------------------CA AAGGAAGGAAATGATT-GATTGCCTGTAGCTCAA--------------------AGCCTAGTTGGCT-----GTTTGTGA CTGGTCGTCCTTAGGTTTCGATTTCATAACCTTGAGGCATTTACAGGCTTCGATTTTGGTTTG-TTACATAGGCCCCCAC GGCATTCAAGCCCCCTCAGTCTAATGGCCTCCTCATTTAATTAATTT-AACA---GTAG---ATTAGCAGATAAGTAGGT C--CATCAACAAATGA---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AT CTGGATATTGTCTGGCTTTTTATT >Myotis_myotis TAATCATAT----TTTAGCCAAAATTGGAAGCATTTCTG--TTT----------TTAAAATGCTGCTTTCT--------- --CACACACGGTGGATAG---GTAG------TGTTCAAAGATAGACTGAAGCGTGTTCGAAATGTTAAGGGTTTGTTTGA GCAAAGGTAAATTTGAACAGGTCAGCACCAAACCGA-AAACAGTTACCAACAATCCACCCACAGAAGC-TGGGGA--GAG ACTTCT---ATAGAGAAAAAACGGAGG---------------------------------------------------CA AAGTCAGGAAA------------------CGTAA--------------------AGGCTGGTTGGCCTTCAGGTTTGTGA CTGGTTGTCCTTTG--------TTTGTAACCTTGAGGCATTTACAGGCTTTGGTTTGGGT-TG-GTCCATAGGCTGCCAA GGCATTAGAGCCACCTCAGTCTCATGGCCTCCTTGTTTAATCCACAG-TA-------AG---ATTAGTGGATAAGGAAGT C--CGTGGGCAAGTGA---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AA ATGGATAATGTCTGGCTTTTCATT >Rousettus_aegyptiacus TAGCAATTC----TGTATCCAATTTCTGAAGCGTTTTTT--TTT----------AA----TGCTGCTTTCT--------- --CATACTAG----ATAG---ATAA------AATTCAAAGATAAACTGAGGCTTATTAAAAATGA---------ATTTAA GCAAAAGTTGACTCAAGTGAGGCAGTACCAAACCAG-AAGTGGTTAG-AGCAATCCATCAACCGACAC-TGGTGA--GAG ACTT-----ATAGAGAAAAGGTGGACG---------------------------------------------------CA AAGTAAGGAAACTGTT-GATTGGCTATAGCTTAA--------------------AGCCTAGTTGGCT-----ATTTGACA TTGGTTATCCTTAGGCCTAGATTTCATAACCTGGAGGCATTTATAGGATTAGATTTTAGTTTG-GTATATAGGCTGCCAA AACATTAGAGCCACCTTAGTCTAATGGCCTTCTTATTTAATTAATTTTAACA---GTGG---ACAAGTGGATAAGTAAAT C--CAGTGACAAGTGA---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AT CTGAATATTGTCTGGCTTATTATT >Condylura_cristata AAACTACTTTTTATTTATCCAATTTCGGAAGCATTTTTG--TTT----------AAAATGTGCAGCTTTCT--------- --TACACTCAGTGAATAG-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------GCAG---ACAAGCCA---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AT CTGGATATTGTGCTGCATTCTGTT >Erinaceus_europaeus ACAAAACTT----TGTAGACAATTTCCTGAGCACTTTG---TTT----------AAA---CCATGCTTTAAACAAAGCAT GGTAGACTAGGCAGACAG-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------TCATAG---ACTAGTGAATGAGTGGGT TCACATTGACAGATCAATCTGTATTTATTTTTGCATTCATTTTTAAAGATTTTATTTATTTGAGGGGAAGAGAGAACCAG GGTGTCACTATGGCACACACATTGCCAGGAATTGAACTCTGGACCTCATGCTTAAGAGTCTAATACATTTATCCACTGAG CCACCTCCCAGGTTTCA--------------------------------------------------------------- ------------------------------------------------------------------------------AC CTGGACACTGTGTAAAATTTTGTT >Homo_sapiens TAACAAGTT----TTTAAGCAATTCCAGAAACTTTTTTA--TTT----------AAAAA--------------------- ------CTCTATGGCTAG-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------GTAG---AACAGTAGATAAGCAGGT C--CACAGATAAATCAATCAGAGAAAAAAAAATCTTCCTTTAGAGGAGGTACATGAAACAGAAAACCCTCCCCATGACGA GATGCAACCATGATTCCCTAGGGAGATGAATGGGACCGCTCAGGACCATTCCCATTTGTCCATCTTCACTCCCCAAATGG ACCAGTGACCCCTACTGGATTGTGACAGCTGTGGGCAAAACCCTCCTCCAATTCATGCTCATCATTAAGTAGGAAACTCC ATCGTGGAGGGAGGCACAAAGCTGTTTAGACCCTGGAATTTCACCTAAGGCATAGAGATGCACACATCGCAGATGACCAC ATGGATACTGTCTGCATTTTGATT Dog23_LTR >LTR10_EC -----------------------------------------------------------TGTCGAGAG-TTTAGCTAAGC TACTCCATGGTATTGCTGCCTCGGCATCCA----------TTTTGTTTGGCCAAGCGGCCTGCGGGGACCTTAAACTGAC ACTAG-CCCCTCATGCAAGCGCATGCCCTAGATAGCAGCCCGCAGAGTCACA-AGCAAATG-TAAGTTCCTGATATGACT TCCCCAACAGCCCTTGTGATCAACAGTCTCCCCCGCCTCCCAGGGCCTTCC--CCTTGTGCGCCCCTTAGATAAGACCCC CG----TGGAGCTTACCAAAACCCCGCTCTTTTTGGTTTGAATTGACCAATCCGGCCTTAGCCCGGGAACCCCAAAGCAC TCCACCCACGGACCCTAA-------TAAAGGCATGTGCCCCAGGTCCTGCCTCTCTCTCTGCCTGCACCCTGCCT----T GACCTCCCTATGTGGCCCCTCGAGGCGTGCCGTGTACTTCCTCCAGGACC-------TGTGAGTAATAAACTTCTCTATT TCAATTTCTCTTGTGGTCTGTTGTTGAACCGCGGCTCACCATCC-----GGCACCCTGTGCTCCACTTAACAAATGTTAA TTTAACAAAGTCATAACA-------------------------------------------------------------- ----- >Canis_familiaris GCCAGGGACTCCTACAAATATCTAAAATTCAGTG-TCAGC-AAAAATA---TAAGA---TTTCAAGAG-TTTATCTAAGC TATTCTATGGTATTGTTGCCTTGGCATTCA----------TTTTGTGCAGCCAAGCAGCCTGTATGGACCTTAAACTGAC AGTAG-CCCTTCATGAAAGCTCCCATCCTAAATGGCAG-CCACAGAGCCACA-AGAAAATG-CAAGTCATTGATACGACT T-CCCAATAGCTTTTTGG--TAATAATCTCTCCTGCCTCCCA-TACCTATATGCCTCCTGTACTTCTTGGATAAAACCCC TG----TGGGACTTACCAAAGTCCTCTTC-TTTTAGTTTGAGTTGACCAATTTGGCCCCAGCCTGGGAACCCCAAAGCAC TCTACACATGGATCCTAA--------AAAGA-AAGTGCCCCTGGTCCTGTCCCTCTCTCTGCCTGCACCATGTCT----T GACTTCTCCAAATAGCACCTTGTGGTGCTTCCTCTACCTCCTCTAACACC-------TGTGAGTGATAGTCTTCTCTATT TCAATTTCTCTTGTGGTCTTTTGCTGAACTGTGGCTCACCATAC-----AGTAGCCTGTACTGTAGTTTACACATGTTAA TTTAACAGTGTCATAATA---TAAGT---TTATAAACTCAGAAAAGTGATGAAACAATTGAAGAGGAAACTAAAATACAG GGAAA >Felis_catus GCAGGGGACTCATACAAATATCTAAAATGCATT--TCAGC-AAAAATA---TAAAA---TGCCAAGAG-TTGAGCTAACC TACTCCATGGTATTGCTGCTTTGGCATCCA----------TTTTGTGCAGCCAAGCAGCCTGTGGGGACCTTAAGCTGAC AGCAG-CCCTTCATGCAAGTTCATGTCCTGGATGGCAG-CCACAGAGCCACA-AGAAAATG-CAGGTTCCTGATAGGACT C-CCCAACAGCC-TTGTAATCAACAGTCTCTCCTGCCTCCCAGCACATCTGTGCCTTCTGCACTCCTTGGATAAAACCCC TG----TGGGACTTACCATAACCCTGCT--TTTTGGTCTGAGTTGACCAATTTGGACCTAGCCTGGGAACAAGAGAGCCC TCTACACACAGACCTTAA-------TAAAGG-AAGTGCCCCAGGTCCTGTCACTCTCTCTGCCTGCACCTTGCCC----T GACCTCTCCACATGGCACCTTGTGGTGCTCCCTCTACCTCCTCTAAGACC-------TGTGACTATTAGACTTCTCTATT TCAATTTCTCTTGTGG-CTTTCATTGAACCATGATTCACCATCCAGTAGAGTAGCTTGTACTCTAGTTATCACATGTTAA TTTAACAATGTCATAACA---TAAGG---TCATAAACTCAGAAAAGTGAAGGCGG-AGGGAAGAGGAAGCTAAGATACAC AAAAA >Sus_scrofa GGCAGGGACT--TGTAAATATCTAAAATGCAGTA-TCAAC-AAAAATA---TAAAG---TGGTGAGAGTTTTATCTAAGC TATTC-ATGGTATTGCTGCACTGGCATCCC----------TTTTGTGTGGCCAAGTGTCCCGCAGAGACCTTAAACAGAT ACTAGTCCCTTCATACAGAGGTATTCCTTAGACAACA----------------AACAAACA-TAAGTCCCTGATATGACT TCCCCAACAGTGCTTGTGATCAACACTCTCCCTCGCCTCCCGGCACCCATATGCCTTATGCATCTCTTGTATAAGACCTC CA----TGGGTTTTTCCAAAACC-TACTC-TCTTGTTTTGAATTGGCCACTCTGACCCTAGCCTGGGAACCCCAAAGCAC TCTAACTACAGATGCTAA-------GACAACTAAGTGCCCTAGGTCCTGCCATTCTCTCTGCCTGCACCCTGCCT----T GACCTCTCCAAATGGCCCCTTGAGGAGTGCCAAGCACCTCCTCCAGGACC-------TGGGACTAATAAACTTCTCTGTT TCAGTTTCTCT-GTGGCCTTTAGCGGAAT--AGGTTCACCATCT-----GGCACCCTCTGTTCCACTTAACAAATGTGA- ----ACAAAATCACATTC---TGAGC----CATAAACCCAGAAAAGTGAAGAC--------AGAGGAACATAAGGTACAC AGAAA >Tursiops_truncatus GGCATGGACT--TATAAATATCTAAAATGCAGTATTCAGCAAAAAATA---TAAGG---TGTAGATAG-TTTAGCTAAGC TACTCCATGGTACTGGTGCCT-GGCATCCA----------TTTTGTGTGTCCAAGTGTCCTGTAGAGACTTTAAACCGAC ACTAGACCCTTCATGCAAGAGTATTGCTTAGGTAACAG-CTACAGAGTCACA-AGCAAATGTTAAGTCCCTGATTTGACT TCCCCAACAGCCCTTGAGATCAACATTCTCTCTTGCCTCCCAGCACCTGTATGCCTTTCACGGCCCTTGGATAAGAACCC CA----AGGGACTTAGGAAAACCACACTC-TTTTGTTTTGAATTGACCAATTGGACCCTAGCCCAGGAACCCCAAAGCAC TCTAGCTACAGATGCTAA-------TAAAAGCAAGTGCACCAGGTCCTGTCACTCTCTCTGCCTGCACCCTGCCT----T GACCTCTCCAAATAGCCCCTTGAGGTGTGCTTAATACCTCCTCTGGGACC-------TGTGAGTAATAAACTTCTCTATT TCAATTTCTCTTTTGGTCTTTTGTTGAAC--AGATTCACCATCT-----GGCACCCTGTGCTCCACTTAACAAATGTTA- ----ACGAAGTCAGAAGA---TGACG---TTATAAACTCAGAAAAGTGAAGACAG-GGGAAAGGGGAACTTAAGGTACCC AGAAA >Equus_caballus GGCAGGGAGTCACATAAATATCTAAACTGCAGTA-TCAGC-AAAAATA---TAGGA---TGTTAGCAG-TTTAGCTAAGC TACTCCATGGTATTGCTGCCGCGGCGTCCA----------TTTTGTGTGGCCAAGTGGTCTGCAGGGACCTTGAACTGAC TCTGG-GCCCTCATGCAAGCACACGCCCTAGATAGCAGCCTGCAGAGTCACATAGCAAATG-TAGGTTCCTGACATGACT TCCCCCACAGCCCCTGGGATTAACAGTCTC-CCTGCTTCCCGGCACCTGTATGCCTCATGTGCCCCTTCAACAAGATCCC CC----TTGGACTTGTCAAAACTTAGCTA-TTTTGGTTTGAATTGACCAATCTGTCCCCAGCCTGAGAAACCCAAAACAC TCTATCCATGAACCCTAA-------TAAGGG-AAGTGTCCCAAGTCCTGTCACTCGCTCTGCCTGCA-CCTGCCTCGGGT GACCTCCCTGATTGGCTCCTTGAGGTATGCGCTGTACCTTCTCCAGGAGC-------TGTGAATAATAAACGTCTTTATT TCAGTTTCTTTTGTGATCTTTTGTTGAACTGTGGCTCACCACAG-----GGTAGCCTGTGTGTCATTTAAAAAATGTTAA TTTAACAAAGTCATGACA---TAAGG---TTATAGACACAGAAAAGTGAAAATGG-GGAAAAGCAGAACCTAAGGTACTT AGAAA >Ceratotherium_simum GGAAAGGATTCATATAAATATCTAAAATGCAGTA-TCAGC-AAAAATA---TAAGA---TGTTGGGAG-TTTAGCTAACC TACTCCATGGTATTGTTGCCTAGGCATCCA----------TTTTGTGTGGCTAAGTGGTCTACAGGGGCCTTGAACTGAC ACCAG-CTCCTTCTGCAAGCCCATGCCCTAGACAGCAGCCTGCAGAGTCACACAGCAAATG-TAAGTTCCTGATATGATT T---------CCATTGTGATC-ATAGCCTCTCCTCTCTCCCAGCACCTGTATGCCTTATACACCCCTTAGATAAGACCCC CG----TGGGACTTACCCAAACCCAGCTC-TCTTGGTTTGAATTGACCAATCTGGCCCTAGCCTGAGAAGTCCAAAGTGC TCTACCCATGAACCCTAA-------TAAAGA-AAGTGCCCCAAGTCCTGTCACTCTCTCTGCCTGCA-CTT--------T GACCTCCCCAAATGGCCCCTTGAGGTGTGCCCTGTACCTTCCCCA-GATC-------TGTGAGTAATAAACTTCTCTATT TCAATTTATCTTATGATCTTTTGTTGAACTGTGGCTCACCATCT-----GGCAGCCTGTGCACCACTTAAAAAACGTCAA TTTAACAAAGTCATAACA---TGAGG---TTATAAACACAGAAAAGCAAAGACAGAGGGGAAGGGGAACCTAAGGTACAC AGAAA >Myotis_myotis GGAAAGGGCTCATAAAATTATCTAAAATTTAGTG-TCAGC-AAAAATA---TGATT---CATCATGAG-TTTAGCTAAGC TTTTGCATGGTATTGTTAACTCAGCATCCTTTTTTTTTTTTTTTTTTTAATCAGAAGGCTTCCAGGGACCTTAAATTGAC ACTAG-CCCCTTATACAAACACATGCCCTAGATAACAG--CACAGAGTTTA--GGCAAATG-TAAGTTCCTGTCAAGATT C-CCCAACAACCTCTGTGATCAATA------------------------------------------------------- ------TGGGGCTAACAGAAACCCTTCTC-TTTAGGTTTGAATTGACCACTCCTGCCTTAGTCTGGGAACTGCAAAGCAC TCCATCCACAGACTCTGA-------GAAAGGCATATGCCCCGGGTCCTGCCTTTCTCTCTGCCTGCA--CTGTCT----T GACCTCCCCAAGTGGCCTC-AGAGCTGTGCCCTATACCACTTTCAGGACCTATGAATTGTGAGTAATAAACTTCTCTATT TCAATTTCTCTGGTTGTCTGTTGTAGAAC--TGGCTCACCATCT-----AGTACCCTGCTATCCACTTAACAAAAGTTAA CTTAACAAAGTCATAATG---TAAGT---CTATAAATTCAAAAAAGAGGAGATAG-ATGAAAGGGGAACCCAAGGTACAC AGAAG >Rousettus_aegyptiacus GGAA--GACCCACACAAATATGTACAATGCAATA-TCAGT-AAAAATA---TAAGA---TGATGAGTG-ATTAGCTATGC TATTCCATGTTACTGCTGCCTTGGCATCTA----------TTTTGTTTCACCAAGAGACCTACAGGGACCTTAAATTGCC ACCAG-CTCCTCATGCAAGCACATGCCCTAGGTAACAGCCCACAGAGTCACA-AGCAAATC-TAAGTCCCTGATATGACT TCCCCAACAGCTCTTGTGATGAATAGTCTCTCCTGAATCCCAGCACCTGTATGCCTTAGGCACTCTTTAGATAAGAACTG CCTCCATGTAGTTAACAAAACCCC-GCTC-TTTTGGTTTGAATTGACCACTCCTGCCCTAGCCTGAAAACCTC------- ---ACCCACAGACCATAATAAAGGCTAAAGGCGAGTGCCCCAGATCCTACCTCTCTCTTTGCC----------------- ------------TCACACATTGGAGAGTTCCCTGTATCCTCTCCAGGACCTATGAACTGTGGATAATGAACTTCTCTGTT TTAATTTCTCTTGTGGTTTGTTGTTGAAC--TGGCTCACCATCT-----AGCACCCTGTGATCTACTTAA-AATGACTAA TTTAATAAAGGCATAACA---TAACA---TTATAAACTCACAAATGGGAAGATAA-GGGAAAAAGAAACATATAGTACAC AGAAA >Condylura_cristata GACGGGAACT--CAAAAATGTCTAAAATGTT----TCTGCAAAAATTG---TAAGG------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------TTATGAATGAAGAAAAGTTAAGACAATGGGGAAGAGGAATTTAAAATACAC AGCAG >Erinaceus_europaeus GAAGTGGAC--ACATGAGTATCTAAGACGCTATG-TCTGC--ATCTCA---TGGGG------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------TCATAAGTCAAGAGCAGCTA-GACAT---------GGAA---GAGACAAAC AGAAT >Homo_sapiens GGAGAGGACTCACTCGA---CATGAAAAAAAGTA-TCAGT--AAATTA---TAAGG------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------TTGTAAACTCAGAAAAGTGAAGACAA------AAGGCAGCCCAAGGTACAC AGAGA Dog26_LINE >L1MA9_3END -------------------------------------------------------------------------------- ---------------AGAAAAGGGAACCCTTGTACACT--GTTGGTGGGAATGTAAATTGGTACAGCCATTATGGAAAAC AGTATGGAGGTTCCTCAAAAAATTAAAAATAGAACTACCATATGATCCAGCAATCCCACTTCTGGGTATATATCCAAA-G GAAATGAAATCAGTATCTCGAAGAGATATCTGCACTCCCATGTTCATTGCAGCATTATTCACAATAGCCAAGATATGGAA NCAACCTAAGTGTCCATCGACGGATGAATGGATAAAGAAAATGTGGTATATATACACA-------------ATGGAATAT TATTCAGCCTTAAAAAAGAAGGAAATCCTGCCATTTGTGACAACATGGATGAACCTGGAGGACATTATGCTAAGTGAAAT AAGCCAGGCACAGAAAGACAAATACTGCATGATCTCACTTATATGTGGAATCTAAAAAA--------------------- --GTCAAACTCATAGAAGCAGAGAGTAGAATGGTGGTTGCCAGGGGCTGGGGGGTGGGGG---------AAATGGGGAGA TGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGTACAGCATGGTGACTATAG TTAATAATACTGTATTGTATACTTGAAATTTGCTAAG---AGAGTAGATCTTAAGTGTTCTCAC--------CACACACA AAAAAAT---GGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCAC----AATGTATAC GTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA ------------------------------------------------------------------------------ >Canis_familiaris CAGCTTTCTCTTCTG-----TGGAATCAGA------AAA-AAACTCTTATTTGTTTGTTTA---------------AAAA TATTAATGCGTA-----------------TCGTGCACT--GTTGGTGGGAGTGTAAATTGGTGCAGCCACTAAGGCAAAC AAGATGGAGGTTCCTCAAAGA-TTAAAAATAGAACTACTGTATGATCCATCAATTCCACTTCTGGATATTTATCCAAA-G AAAATGAAAGCA-TAACTTGAAAAGATATGTGC-TCCCTATGTTCATTGAAGCATTAGTTTTAATAGCCAATATATTGAA ACACTCTAGGTGTCC------------GTGGATAAAGAAGATG---CACACACACATG-------------ATAGACTAT TCTTCAACCATAAAAATGAATGAAA--------TTTTCAGCCACATGGATGGACCTTGAAGACATTTTGCTAAGTGAAAT AAGTCAAATAGAAAAAGACA-ATACTACATGATCTCACTTACATGTGAGATCAAAAAAAAAAAAAAAACCCAAAATTAAA AAGCCTAACTCAGAG------AAAACAGATCAGTGGTTG--GGAGGAGGAGGGGCAGGTAGAC------AAAATGGGTGT AGGGAGCCAAAAGGCACAAACTTCCAGGTAT---AAAGAAGTAAATCCTGGGGATCTGATGTACAGCATGGCAACTATGG TTAATAATGCTGTATTACATACTGGAAAATTCCTAAG---AGAGTAAATCTTAAAAGTTTTCTT--------CACAAGAA AAAGAATTTTGGC-ACTTTGTATGATGACAG--ATCTTAAGTAAACTTACTGTGGTCACCATTTTGC----AATATATAC AAGAACAGAATCATTATTTTGTACACCTGAAACTAATATAG-TGTTG-ATGTCAATTATGCCTCAAT---AA-------- ---AGAA-TATTAATGTATTT---ATTATTA---TCATATCA-AAGAAATGGTGCTCACCTAGCACCTTTGAGTGGCG >Felis_catus CAGCTTTCTCCTCTG-----TAGAATCAGA------AAT----------GATATTTATTTA----TTTATTTT---TAAA TATTAACCTATC-----------------CTGTGCACT--GTTGGTG-GAATGTAAATTGGATCTGCCACTACAGAAAAC AGTATGGAAGTTCCTCAGAAA-TGAAAAAGAGAACTACCTTATGATCCAACAACTCCATTTCTAGGTATTTATCCAAA-G AAAAGAAAAACACTGACTTGAAAAAATATATGC-ATCCCATGTTCATTGAAGCATTAATTATAATAGCCAGTAGATGGAA ACAACCTAGGCATCCACTGATAGATGAACGGATGAAGAAGATGTGACATATACATATATCATAGATACATGATAGACTAT TGCCTAACCATAAAAAAGAATGAAA--------TTTGCAACAACATGGATGGACCTTGAAGGCATTTTACTAAG-----T AAGTCAAACAGAAAAAGACACATACCGTGTGATGTCGCTCATATGTGAAATCTAAAAAACACAAAAAC---------AAA AAATGTAACTCAGAG------AGAACAGATTGGTGGTTGCCAGAGATTGGGAGGAAGGGCAGGTAGACAAAAATGCGTGT AGGAGGCTAAAAGGTAAAAACTTCCTGTTAT--AAAATAAATAAATCCTGGGGATCTAATGCACAGCATGGTGACTATAG TTAACAGTACTGTATTGCATACTGGAAAATTGCTGAG---AGAATAAATCTTAAAAGTTCTCTT--------CATGAGAA AAAAAGTTTTGGC-ACTTTGTATGACGACAG--ATGTTAACTGAACTCATTGCAGTAATCATTTTAC----AAAATTTAC AAATATTGAATCATTGTGCTGTACACCTGAAACTAAA-----TGTTTTATGTCAATTATGCCCCGATA--AA-------- ---AAAA-TATTAACGTATGT---ATTATTA---TTGCATGA-AAGAAATGGTGCTC-CATTGGACCTTTGAGCACTG >Manis_javanica CAGCTTTCTTCTCTG-----TAGAATAGGA------ACC---ACGTT-AATTATTTAATTA-ATTTTTACCTT---AAAA TA-TAATGTATA-----------------TTGTTCACT--ATTGGTGGGAATGTAAATTGGTGCACCCACTATGGAAAAC AATATGGAAGGTCCCAAAATA-TTTAAAATAGAACTACCGTATGAATC---------ATGTCTAGGTATTTGTCTGAA-T AAAATGAAAACACTAACTCAAAAATTTATGTGCACCCCCATGTTCATTACAGCCTGATTTATAATAGCCAAGATATGGGA ACAAGATAAGTGTCCATTGATGAATGAATAGAT-AAGAAACTGTGGTATATATATACA-------------ATGTAATAT T---CAGCCATAAAAAAGAATGAAATCTTGCCTTTTGCAACAACACGGATGGACCTTGAGGGCATTATGTTAAATGAAAT AAGTCAAACAAAGAAAGGCAAATACTGTATGCTCTCACTTATGTGGAGAATTAATAAAAAGAAAAAAC----------CA CAACAAAACTCACAG----ATAGAGTAGGTTGGTGGT----AGAGGCTGAGAGGG------------------TGAGTGA AATGAGTGAAAGGGGTCAAGCATCCAGTTAC------AAAATAAGTCATGGGGATGTAACATAAAGCATGGTGACTATAG GTAATAATAATGTATTGCATATTTGAAAGTTGCTAATAACAGAGTAAATCTTAAATATTCTCATCACACACACACACACA CACAAATACCTGTGGCCATGTATGGTGATGG--ATGTTAACCAGACTTATTGTGGTGATCATTTTGC----AATATATAA AAATATTGAGTCACTATGATGTATAACTGAAACTAATATAA-TGTTATATGTCAATTATACATCACTTGAAA-------- ---AAAA-AAGTAATGTGTGT---ATTATTT---TTGCATGA-AGGAAATGGTCCTCACCTTGCCCCTGTGAGTGGTG >Sus_scrofa CAGCTTTCTTCTTTG-----TGGAATAGGA------AAA---ATGCTAATTTACTTATGTATTTTTTTACTTT---AAAA TGTTAATGCATA-----------------TTGTGCACT--ATTGTTGAGAATGTAGATTGGTACAGCTACTGGGGAAAAC AGTGTTGAGTTTCCTCAAAAA-TTAAAAATAGAATTACTAGATGATTCAGCA-----ACTTCTAGGTATTAACACAAACA AAAATGAAAACACTAACTTGAAAACATATCTGG-TCTCCATGTTCTTAGCAACATTATTTACAATAGCCAAGATTTGGAA ACAACCTAAGTATTCATTGATAG-TGAATGGATAAAGAACATGTGGTATATACATACA-------------ATGGAATAT TATTCAGCCATATAAAATAATGAAAGCTTGCCATTTGTGATAACATGAGTGGACCTTGAGGGCATTATGCTAAGTGAAAT AAGTCAAACAGATAAAGACAAATACTATATGATCTAACTTATAAGAGGAATCTTAAAAAAAAAA--------------CC AAAACACCCTCATAG----ATAGAACAGATTGATTGTTGCCAGAGATAGAGAGGGATG----------------GAATGA AGGGCGTCAAAAGGCACAAACTTCCAGTTAT--AAAATAAAGAAGTCATGGGAATGCAATGTATAGCATGGCGACTATAG TTAA---TTCTGTACTGCATATTTGAAAGCTGCTAAG---AGAGTAAATCTTAAAAGTTCTCAT--------CACAAGAA AAAAAATTT--GTAACTATATATGATGACAG--ATGTTGAATAGATTTGCTGTAGTGAT---TTTGCAATAAATATTTAC AAATACCAAAT-ATTATGTAGTATACCCAAAATTAAGATAA-TGCTATATGTCATTTATACCTCAATTT--A-------- ---AAAA--ATTAATGCATTT---ATTATTA---TTGCATCA-AAGAAATGGTGGTCACCTTTCACCTCTGAGTGGTG >Vicugna_pacos CAGCCTTCTTCTCTG-----TGGAATAGGA------AAA----TGCTAGCTTATTTATTTATTTTTTTACTTT---AAAA TATTAATGTTGA-----------------TTGTGCAGTTTGTGGGTGGGTTTGTAAATTGGTGTAGCCACTATGGAAAAC AGTACAGAGGGTCCTGAAAAG-TCAAAAATAGAGCCACTATATGATCCAGCAATTCCACTTCTGGGTAGTTATGTGAA-G AAAATGAAAACACTAACTC-AAAAGATGCATATGCCCCCATGTTCACTGCAGCATTACCTACAACAGCCAAGAAATGGAA ACAATCTAAGTATCCATTGGTAGATGAATGGATAAAGAAAATGTGGTATATATAGACA-------------ATGGAATAT TATTCAGCCATAAAAAAGAATGGGAGCTGGCCATTTGTGATAACACGGATGGAACTTGAGGGCATTATGCTGAGTGAAAT AAGTCAGACAGAGAAAGACAAATAGTGTATGATCTCACTCATAGGAGGAACCTTAAAAAAGA------------------ ------CCCTCATAC----ACAGAACAGATTGGTGGTAGCTAGAGGTGGGGAGGGATG------------AGATGGGTGA AGGGGGTCAAAAGATACAAATGTCCAGTTAT--AAAATAAGTAAGTCATGGGGATGCAATGTACAGCATGGTGACTATAG TTAA---TACTGTACTGTTCATTTGAAAGTTGCCAAG---AGAGTAAATCTTAAAAGTTCTCAT--------CAGAAGAA AAAATTCTTTGTTAACTATGTATAGTGACAG--ATGTTGACTAGATTTATTGTG---ATCAATTTGCAATAAATATAAAC AAATATTGAATCAGTATGTAGTATATACAAAACTAACATAG-TGCTATGTGTCAATTATACTTCAATT------------ ---AAAA--ATTAATATATTT---ATTATTA---TTGCATCC-AAGAAATGGTGCTCTCCTTGCACCTCTGAGTGGTG >Equus_caballus CAGATTTCTTCTCTGTGGAATGGAATAGGA------AAA-------------ATTTATTTA-TTTTTTACTTT------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---AAGA-TACTAATATGTTT---ATTATTG---CTGCATTG-AAGAAATCGTGC----------------------- >Ceratotherium_simum CAGCTTTCTCCTCTG-----TGGAACAGCA------AAA---------ATTTATTTATTTA-GTTTTTACTTT------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---AAGA-TATTAATATGTTT---ATTATTA---TTGCATCA-AAGAAACAGTGC----------------------- >Myotis_myotis CAGCATTCTCCTCTG-----TGAAAAAGGA------AAA---ACACTAATTTATTTATTAG--TTTTCACTTT------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---AAGA-TATTAATGTGTTT---ATTATTATTATTGCACCA-CAGATATGGAGCTCACCTTGCACCTCTGAATGCTG >Rousettus_aegyptiacus TAGCTCACTCCTCTG-----TGGAATAGAA------AAA---ACACTCATTTATTTATTTA-GTTTTCACTTT------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---AAGA-TATTAATGTATTT---ATTATTG---TTGCATCC-AAGAAATGGTGCTTACCTTGTACCTTGGAGTGATG >Condylura_cristata CAACTCTCGCCTCTG-----CGGAGCAGGC------AAATATTCATTCATTCATTCATTCATTCATTTATCTT------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---ACAATTATGAATGTGTTT---CTTATCA---TTTTATCAAAAGAAATGGTACCCACCTTACAAGTTGGAGTGCTA >Uropsilus_gracilis CAG-TTTCTCCTTGATAGAATGGAGAAGAATCAAACAAATATTCATTCATTAATTCATTGATGCATTCATTTA------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----TCA-TATATATGTATTT---ACTACCT---TTGCATCA-AAGACATGTCATCACCCTTGCAGCTTGGAGTGGTA >Homo_sapiens CAGCTTTCTTCTCTA-----TGGAATAGGA------ATA-----------ATATTTATTCA-TTTTTTACTTT------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---AAAA-TGTTCATGTTTTT---ATTACTA---TTGCATC---AAAAAAGATGCTTATCTTGCACTTTACAGTGTGG Dog27_LTR >CARERVR1_LTR -------------------------------------------------------------TGTTGGGGAAGGTCATCGA GAAGACGTGACCGCCGGTTGACCCGTGAGCTGGACCCGGGCAATCAGAGGCTCCTCACCCCCTCCCCTGTCCTTGGA-AT GTGGGTTCCGCTTGCCTTCCCCGCTCCCAGAGGCTGCTCCAAGGACACAGCCTTGAGATAGTGATGTGGTGTTGAGAACA CCTGNACGGTATACGTGACTGAACCCAGTTAAGGCCTCTATAT------AAACTTTTAAGA-TTTGGCGGGCGGGTGCGG AGATCTACTCGTCTTGCTGCCGCC----CAAGACAAGCCTCGT-ATGTAAGTTCCCTTTGCTTATTAAANCTGCCACCTA CCAACCTGGAGTGGCCTGCCTCTTTCTTCGGTCT---------------------CTCCCTGCCCTCTGCGTACGGGGGC CGGTTTCAGATTACACC-CGGGAAGCTCCCGAGGGGGTTGCGAACCAACA------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----- >Canis_familiaris CACAAGTGCTTGGGATTTTGATTTTTGGCTGGTTTGAATATTTAATTTGC---ATGAG---TGTTGTAAG---TCAT-GA GAAGATATGACTGCTGGTTGATCTGGCACCTGGCCT----------GGGGCTCCTCACCCTCTACCCTGTCCTTGAA-GT GTACATTCTGCCCACCATTCCCATACTAGGA-GGTGTTTCGAGGACATAGTTTTGAGAGAGCAGTGTGTTATTGAGACCA TCTTGACTGAATATGTGAGCAAACCCCATTAAAGCCTCTGTAT------CAGCTTTTAAGATTTTGACA----AGTGAGG AGATCTACTCATCTTGTGGCTGCC----AAAGACAAG-CTCCT-GTGTAAGTTCTT-TTGTTTCTTTAACCTGCCA---- -----------------GTTTCTTTCTTTGGTTT---------------------CTCCTTGATCTCCATGTACTGGGGC TAGTTTCAGATTTTACC-TGGGGAATTCTCAGGA---TTGTCAACTAACA---ATGA----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------G---TGTATATAT--------TTTTCAGTGTATAATAAGTTGGTGGTTAAAATTATTCTA A-GAA >Felis_catus CGAAAGTGTTTAGGAGTTTGATCTTTGGTTCTTTTGAATATTTAATCTGC---ATGAG---TGTTGTAGGAGGTCATTGA GAGGACATGACTGTCGGTTGATCTGGGAGCTAGAC----------GGGGGCTCATCACCCTGTCCCCTGTCCTTGAA-AT GTACATTCTTCTCACCATTCCCACACTAGGA-ACTGTTTCAAGGACA-AGTCTTGAGAGAATAGTGTGTTACTGACAGCA CCTTGACTGAATATATGA-TAAACCCCATTTAGGCCTCTGTCT------CAACTTTAAAGATTCTGGAA-ACAGGAGTGG AGATCTACTCGTC-TGTGGCTGCC----AAAGACGAGCCTCCT-ATATAAGTTCCC-TTGCTTATTTAA------ACCTG CTGATATGGAGTGGATAACCTCTTTCTTTGGTCT---------------------CTCCTTGACCTCCATGTACTTGGGC CAGTTTCAAATTTCACC-CGGGGAGCTTCCAAGG---TTGTGAACCAACA---ACAA----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------G---TGTATATAT--------TTTTCAGTGTATAATAAATTGGTGGTTAAAATTATTCTA AAGAA >Manis_pentadactyla CACAAGCATCTGGGAATCTGATTTTTGGTTATTTTGAATATTTAATTTGC---ATGAG---TGTTGGAGGTGGTCTTCAA GAGGCTATGACTACTAGTTGGCCTGTGAACTGGACCTGGGCAATTGGAGGCTCCTCTCTCCATCCCA-GGCCTTGGG-AT ATACATTCTGCCCACCATTTCCACACTAGGA-GCTGTTTGAAGGAC--AGCCTTGAGAGAGTAAGATGGTGTTGAACCCA TCTCGACTTAATAAGTGGCTGAACCCAGTTAAGGCCTCTATAT------AAACTTTTAAGAATCTGGCAGGT-GGTGCAG AGATCCACTTATCTTGTGGCTGCC----CAAGACAAGCCTTGT-ATGTAAGTTCTC-TTGCTTC---AGCCTGCC-TCCA CCAGTCTGGAGTGGTCTGTCTCAGTTTCCCCTCC------------------------CCTGCCTTCTGTGTACTGGGGC CAGTTTCAGATTTTACCGCAGGAAACTCCCAGGG---CTGTGAACCAACA---AGGA----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------G---TATGTATCT--------TTTTTACTGTATAAT----TGGTGGTTAAAATTAAATAA AAAAA >Sus_scrofa CCCAAGTGTTTGGAAGTTTGATTTTTGGTTATTTTGAATATTTAATTTAT---ATGAA---TATTGGAGGAGGTCTTTGA GAGGATGTGGCCGCTGGTTGAC------------ACAGGCAAACTGGGGGCTCCTCACTCTCTCCCCTGTCTTTGGA-AT GTAC-CTCTGCCCACTGTTCTCATACTCAGA-GCTGTTTCAAGGATGTAGCCTTGAGAGAGTAATGTGTTATTGAGACCA TCTGGACTGAATACATGGCTGAACCCCAATAAGTTCTCCTTAA------AACTTTTTAAGATTCTGGCA---CAGTGCAG TGATCTACT-GTTTTGTGGCTGCC----CAAGAGAAGCTTCCT-ATGTAAGTTCCC-TTGTTTATGAAATGTGCCATCTA CCCATCCGGAGGGGCACGCCTCTTTCCTCCTTCT---------------------CTCCTTGCCTTCCGTGTAC-AGGGC CCGTTTCAGATCTCACC-TGGAGAACTCCCAGTA---TTGTGATCCAACA---ATGA----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------G---CATATATAT--------TTTTCAGTGTGTAATAACCTGATGTTTAAAATGATACCA AAGAA >Bos_taurus CATAGGCATTTGGGAATTTGGTTTTGGGTTATTTTGAATACTTAATTTGT---ATGAG---TGTTGCAGAAGGTTTTGGA GAGGATGTGAATGCCAGGTGACCTGT-AGCTTGACTCAGACAACTGAAGGCTCCTCACTCCCTCCC--GTCTTTGGA-AT GGACA-TCTGCCCACTGCTCCCACACTAGCA-ACTGTTCTAAGGAGGCAGCCTTGAGAGAGTAATGTGTTACTGAGACCA TCTGGACTGAATACATGTCTGAACACCATTAAGGCCACCATAT------AAACTTTTCAG--TCTTGCA---TGATGCAG ATGTCTACTTGTCTTGTAGGGGCT----CAAGCCAAGACTCGT-ATG-AAGTTCCC-TTGCTTGATAAGCCTGCCACCTT CCAATCTGGAATAGCCTGCGCCTTTCTTCAGTCT---------------------TCCCTTGCTCTCCATGCATGGAGGC CAATTTCAGATCTCAGC-TGGAGAACGCTGAATA---TTGTGAACCAACA---ATGG----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------G---AATATTT-T--------TTTTCAGTGTGTAATAAATTGATGGTTAAAATTATACTA AAGAA >Equus_caballus CACAAGTGTTTTGGAATTTAAATTTTGG--ATTTTGAATATCTAATTTAC---ATGAG---TGTTGGAAGAGGTCGTTGA GAAGAAGTGACCACCGGTTGACCTGCAAGCTGGACCTGGGCAATTGGAGGCTCCTCAACCCCTCCC--GTCAGTGGA-AT GTACATTCCGCCCACCGTTCCCACACTCCGA-GCTGTTTCGAGGACACAGGCTTGTGAGAGTAAGGTGTTGTTG---CTA TCTGGACCGAATATGTGACTGCACCCAGTGCAGGCCTTTCTAT------AAACCTTTAAAA-TCTGACAGGCCAGTGCGG CGATCTACTCATCTTGCGGCCACT----CAAGACAAGCCTTGTCACGTAAGTTCCT-GTGCTTATTAAACTCACCACCTA CCAATCTGGAGTGGTCTGCCTCTTTTTTCAGTCT---------------------CTCTTTGCCCTCCCTGTATGGTGGC CAGTTTCAGATTTCA-C-TGGGGAACTCTCAAGG---TTGCAAACCAACA---ATGA----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------G---TATATATAC--------ACTTCAGTGTGTAATAGACTGAGGATTAAAATTATCCTG AAGAA >Ceratotherium_simum CGCAAGTGTTTTGGAATTTAATTTTTGGTCATTTTGAATATCTAATTTAC---AAGAG---TGTTGGAAGAGGTCATCGA GAAGATATGACCACAGGTTGGCCTGCAAGCTGGACCTGGGCAATTGGAGGCTCCTCACCCCCTCCCCTGTCCGTGGA-AT GTACGTTCTGCCCACCATTCCTACACTCTGA-GCTGTTTCAAAGATGCAGCCTTGAGAGAGTGAGGTGTTGTTA---CCA TCTGCACTGGATACGTGACTGAACCCAGTTGAGGCCTTTCTAT------AAACTTTTAAAATTCTGGCAGGAGACTGCGG AGACCTACTCGTCTTGTAGTCACC----CGAGACAAGACTTGTTTTGTAAGTTCCT-TTGCTTATTAAACTCACCACCTA CCAGTCTGGAGTGGTCTGCCTCTTTTTTCAGTCT---------------------CTCTTTGCCCTCCTTGTATGGTGGC CAGTTTCAGATTTCACC-TAGGGGACTCTCAGGG---TTGCAAACCAACA---ATGA----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------G---TATAAATAT--------TTTTCAGTGTGTAATAAATTGAGGATTAAAATTATACCA AAGAA >Myotis_myotis -----------------------TTTGCTTATTTTGAATATTTAATTGAG---ATG-G---TGTTG-------------- GAGCACGTGACTGCTGGTTGATTGGTGAGCTGGGCCCAGGCAGTCAGAGGCTCCTCACCCTCTCCCCTGTCCTTGAA-GG GTACATTCTGCCCACCATTCCCACAGTAGGA-GCTGCTTCAAGGACATAGTTTTGAGAGAGTAAGGCATTGTTGAGGCCA TCTGGATGGT----------------------GGCCTCTATATATATAAAAACTTTTAAGATTCTGATG--TGGGTGCAG AGATCTACTCGTCTTGCAGACACCCCAGCCAGACAAGCCTCAT-ATGTGAGTTCCC-TTTCTTACTAACCCTGCCAACTA CCAAGCTGGAGTGGGCTGCCTCTTTCTTCAGTCT-------------------------TAGCCCTCCATGTACTGGGGC CAGTTTCAGATTTCACC-CAGGG--------------TTGTAAACCAACA---ATGAGTACAGTGGGGCCTTGACTTACG AGTTTAATTCGTTCTGTGATGGAGCTTGTAACTCAAATTACTCGTATGTCAAATCAAAAAGTGAATGAGTGAGACATGTG ATGCTGGGCTGATGTTGTGGCGTTCACTGTGATGTTCGCTGCGCCAACTAGTGGTGGGGTATCTGAAGCTGGCTTGTAAC CCGAATTTTAGCTCACAACTCAAAGCAAAAAATCGGCCGAGAGACGGCTCGTATCTCGAAAAACTCGTTAGTCAGAACAC TCGTAAGTCAAGGCTCCACTG---TATATGTAT--------GTTTCAGTG----------------CTAAAATTGTACTA AAGAA >Murina_aurata_feae -----------------AGAGTGTTTGCTTATTTTGAATATTTAATTTAC---CTG-G---TGTTG-------------- GAGGAAGTGACTGCTGGTTGATTGGTGAGCTGGGCCCAGGCAGTCAGAGGCTCCTCACCCTCTCCCCTGTCCTTGAAGGG GTACATTCTGCCCACCATTCCCACAGTAGGA-GTT-CTTCAAGGATGTAGTTTTGAGAGGGTAAGGTATTGTTGAGGCCA TCTGGATGGT----------------------GGCCTCTATAT------AAACTTTTAAGACTCTGATG--TGGGTGCAG AGATCTGCTCGTCTTGCAGACACCCCAGCCAGACAAGCCTCGT-ATGTGAGTTCCC-TTTCTTACTGACTCTGCCATCTA CCAAGCTGGAGTGGGCTGCCTCTTTCTTCAGTCTTACCTGCACCCCTCTCCCCCCCCCCCGCCTCCCCATGTACTGGGGC CAGTTTCAGATTTCACC-CAGAGAACTCTCAGGG----TGTAAAGCAACA---ATGA----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------G---TATATATAT--------TTTTCAGTG----------------CTAAAATTGTACTA AGGAA >Condylura_cristata CACACATG----GAAATTTGAGTTTTGGTTATTTTGAATATTTGACTTAC---AAGAA---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------TATATATATATATATGTTTTTCAGTGTACAGTCAATTGAGCGTTAGAGTTGTACTA AAGAA >Erinaceus_europaeus CATAAATATTTGGGAATTTTAGTTTTGGTTA-TTTGAATATTTAGTATAT---GAAAA---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------TATATGTGTGTA-----TATTCAGTCTATAATAAATTTATGGTTGGAGATATACTA AAGAA >Homo_sapiens CACAAGTGTTTGGGAATTTGA-TTTTGGCTATTTTGAATATTTAACTTAC---ATGAG---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------TACATGTATA-------TTTTCAGTATATAATAAAGTGATGATTAAAATTATACT- ---AA Dog29_LINE >L1_CARN7_3END ------------------------------------------------------------------------TTGTATGG TGACAGATGGTAACTAGACTTATTGTGGTGATCACTTCACAATGTATACAAATG-TCGAATCACTATGTTGTACACCTGA AACTAATATAACATTGTATGTCAATTATACTCAAATA------AAAA------------------AA------------- ---------------------------------------------------------------- >Canis_familiaris AAAATAAGAAGACAAAGTT-TTAAATTTTTTTT----AGGGATGAGAGTGGAT---ACCA-AAAAGATA----------- TGTCAGATGTTAACTAGACTTATTGTGGTGATCATTTTGAAATATAAATAAATA-TCAAATTATTAGGTTGTACACCTGA AACTAATATAATGCTGTATGTCAGTTATACCCCAATAAAG---AAAATGGTTAAAA--TAAAA--AA----AAAAAGAAA GAAA---TGTGGGTAGGAAGTCACATATGACCAT-GGCATAAGAAG------CTGGCCACAGTG >Felis_catus AAAGTAAAAGGACTAATTTTTAATTTTTTTTTTT---AGGGAGGAGAGTAGAT---CTAG-AAAAGATA----------- TGTCAGATGTTAACTAGACTCATTGTGGTGATGATTTTGCAATACATACAAATGTTCAAATCATTATTTTGTATACCTGA AACTAATATAATGCTGTGTGTCAATTATACCCCAATA------AAAATGGTTAAAA--TGCAA--AAT---AAAAAGAAA GATA---TGTGACTAAGAAGTCACATATGACCAT-GACATAGGAAG------CTGGTCAAAGTG >Manis_pentadactyla TTTTTTAAATGACCAGTGTTTACATGTTTTTTTTGAGAGGAAGGAGAGTGGAT---ATAGAAAAAGGCA----------- TGTCAGATGTTAACTAGACTTATTGTTGTGATCATTTTGCAATGTATACAAATA-TTGAATCATTATGTTGTACACCTGA TTCTAGTATAATGATGTATGTTAGTTTTATCTCAATAAAGT-AAAAAAAATTAAAATTTAGAA--AAC---AAAGAAAAA GATA---TCTAAGTAGGAAGCCATATATAATCAT-AGCATAGGAAGAG----CTGGCCAGAGTG >Sus_scrofa AAAATAACAT----------TAAAATTATTTCTGGCAGGGGAGGTAAGTAGAT---ATAG-AAACAATA----------- TGTTGGATGTTAACTAGGC-----ACTGTGATCATTTTGCAA-------------TTGAATCATT--GTTGCACAGGTGA AATACAAACAATTCGGGATGTCAGTGACAGCTCTGTTTTTTAAAAAATGGTTAAAGTTTAACAGCAAC---AAAAAATAA AAGA---TGTGAATAGGAAGTCACATATGACCAT-GGCCTTAGAAGAGCTATCTGGCTAAAGTG >Bos_taurus AAAATAAAATAACTAATT--AAAAATTATTTTTGGTGAGAGAGGAAAGCAGTT---GTAAGGAAAAAAA----------- -AAAGTATGTTAACTAGGTTTAT----GTGATCATCTTGCCA-------------TTGAATCATTATGTTGTATACCTGA AATTAATACAATGCTGTATCTCAATTATAGCACACTT--TT-AAAAATGGTTAAATTTTTTTA--AA----AAAGGAAAA CATT---TGTGAACAGGAAGTTACATATGACCATGGGCGTTGGAAGAGTTAGTTGGACAGAGTG >Equus_caballus TAAATAAAATGACTAATTTAAAAAAAATTTTTTTGAAGAGGAGGAGAGTGGAT---ATAGACAAAGATA----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------TTGGAACAGAAAGTCACATGTGACCAC-AGCATAGGAAGAG----CTGGCCAAAGTG >Ceratotherium_simum AAAATAAAATGACTAATTT-TTAAATGTTTTTCTGAGGAGGAGGAGAGTGGAT-------ACAAAGATA----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------TTTGAACAGGAAGTCACATATGACCAT-GGCATACGAAGAG----CTGGTCAAAGTG >Myotis_myotis AAAATGAAATGGCTAAATT-TTAAATTATTTTT--AAGGGGAGCCGAGTAGAT---ACAGAAAAAGACA----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------TGTGGACAGGAAGTCACATATTAGCAT-GGCGTACAAAAAC----CTGGCCAAAGAG >Rousettus_aegyptiacus AAAGTAAAATGACTAATT--TTAAAATGTTATTTGAGGGAGAGGAAAGTAGAT---ATAGAAAAAGACA----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------TGTGAACAGGAAGTCATATATGGTTAT-GG-----ATAGAG----TAGGCTAAAGTG >Condylura_cristata TAAAAAAAATCACTAATAT-----AACTTTTTAAGGGAGGCAGGAGAACAGAT---ATATAAAATGCCA----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------TGTGAACAGAATG---CATACAACAAT-GGCATATGAAAAG----CTGACCAAGGTA >Erinaceus_europaeus AAACTGAAAGGACTGAATTTTTAAATGCATTTTTGAGGGGGAGGAGAATAGAT---ATATAAAAATCTG----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------TGTGAA-AGGAAGTTACATATAACCAT-GGCATA-GAAGAT----CTGGCCAAAGTT >Homo_sapiens AAAATAAAA-GGCTAATTC-AAAAATAAT--------AGGAGGGAGAGCGTGT-----AGAAAATTACA----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------TGTGAACAGGAAGTCATGTGTGACCAT-GGCTTAGAAAGGG----CTGGCCACAGTG Dog31_LINE >L1_CARN5_3END -------------------------------------------------------------------------------- ---------------------------------------------------------------------------TTTTT TATTTGAGTATAGTTGACACACAATGTTACATTAGTTTCAGGTGTACAACATAGTGATTCAACATCTCTATACGTTATG- -------------------------------------------------------------------------------- ----------------------------- >Canis_familiaris AACAGCCACCATTGAACCACCA-AATG--ATGTTAA------------------GCCATTATTATAATTATTAT---TAA ACTT---------------TTAA-AAAA---TTGTTACTACATGGGAAGA-AT-TTGTGAGGGAGATTCAACTTTC--TT TTTAGAGGTACAATTGTCACATAACGT---ATTAGTTTCTGCTGTGTAACATATTGATTCAATCATTGCA---------- --TTAACTTATTTTATTTTTTATA---CATA-GGTAGAGGGAAT---------GTCAACCTCCTTTTCCAAACCTGTTAG TGACTC-CTATTGTATATTGG----AGAA >Felis_catus AACAACCACAGCTGAATCACTA-AATG--GTGTCAA------------------GTCATTATTGTAATTATTAT---TTA ACTC-----------------AA-AAAA---TTGTTACTACATGGGAAGA-AT-TTTGGGGAGGGATTTGATTTTC--TT TATAGAGTTATAATTGCCATATAACAT---ATTAGTTTCTGGTGTATAACATAATGATTCAGTCTTTGCA---------- --CTAACTTGTTTTATTTTTTATA---CTTA-TTTAGAATCAAT---------GTCAACCTCC-TTTCCAAATCTGTCAG TGACTC-CTTTTGAATATTGG----AGAA >Manis_pentadactyla AACAGCCATGACTGAATCACTA-AAAG--GTGCCAA------------------GTCATTATT---ATTGTTAT----TA ACTT-----------TTACTTTC----A---TTGTTATTTTATGGGAAGAGGTATTTTTGGAGGGTTTTGATTTTT--TT TATTGAGAGAAAATTC-------ACCTCAAATTAGATTCAGGTGTACAACATAATGATTCAACATTTGTA---------- --TTAACTTATTTTATTTTTAAAA---CTTA-TTTAGAGGAAAT---------GCCCACTTCCTTTTCCAAACC-ATCAC TGACTC-CTATTGTATATTGG----AGGA >Sus_scrofa AACCACCATAATTAAATCACCA-AAAG--GTGCCAAGACATTTTCATTGTTGTTGTTATTATTACTATTATTAT----TA ACTTTTAAATTTAATTTTATTTT-AATA---CTGTTACTACATGGGAAAA-GAATTTTGCGGGAGGTTTGA-------TT TTTTGAGATATAGTTTTGACATAAAATTATACTAGTTTTAGGTGTACAACATAATAATTTGATATTTGT----------- -----ATTTATTTTA---TTTTTT---TAAA-CTTAGAGGCTGT---------GCCAACCTCCCTTTTCAAACTGATCAA TGACTC-CTACTGTATATTGG----AGAA >Bos_taurus AAATGTTACAACTGAATCACTA-AAAT--GTGCCAAGACATTATTATTACTGTCATTGTTATTTCTATTATTAT---CTA ACTTTTAAATTTAGTTTTATTTT-T-TA---TTGTTACTACAGGGGAAAA-GT-TTTAAAGGGAAGTTTGATTTTTCTTT TTTTGAGATATAGTTGACACATAACATTCACTTAGTTTTAGGGATATAACATAGTGATTTGATACTGGTT---------- --ATAACTGAT-------TTTTTT---TTAA-CTTAGAGGCAAT---------GTTAAATT--------AAATCTATCAG TTACTC-CTATTGAATATTGGGGAAAAAA >Equus_caballus AACAGCCATGACTGAATCACTA-AAAG--ATCTTAA-------TTATTATTATTATTATTATTATTTTTATTAT---TTA ACTT--------ATGTTGTTTTT-AAAG---------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------CTTA-TTTAAAGGCAAT---------GCCAATCTCCTTTTCCAAACCTGTCAA TGACTC-CTACTGTAGATTGG----AGAA >Ceratotherium_simum AACAGCTATGACTGAATCACTA-AAAG--ATGCCAA------------------GTCATTATT---ATTATTAT---TTA ACTT--------ATATTATTTTT-AAAA---------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------CTTATTTTAGAGGCAATAAATTTAGAGTCAATCTCCTCTTCCAAACCTATCAA TGACTC-CTACTATATATTGG----AGAA >Myotis_myotis AATTGGCATGACTGAGTCATTA-AAAG--CTGACAA------------------GAGATTTTT---ATTGTTAT---TTG ACTG--------ATGATAATTTT-TAAA---------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------CTTA-TTTAGAGGCTAT---------ATCAATTACCTTTTCAAAACCTATCAA TGATTC-CCAATGCATATTGA----AAAA >Rousettus_aegyptiacus AATAAGCATAATTGAATCACTA-AAAG--ACTCCAA---------------------ATTATT---AGTATTAT---TTA ACTT--------ATGTTATGTTT-TAAA---------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------TTTA-TTTAGAGGCAAT---------GTCAACCTCTTTTTCCAAGCCTGTCAA TGACTC-CTATCATATATTGG----AAAA >Condylura_cristata AACCGCCTCAAATTAACCATTA-AAAGTCACTCTAA----------------ATGTCACTCTTTGTATTATTAT---TTA ACTT----------GTAGTTTTT---AA---------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------TTTA-TTTACTGACAAT---------CAAAGCCTCCTT--------------- -------------------------ATAA >Sorex_araneus AGCAGTCACAACTAAATCACTACAATA--GTGCCAT------------------CATTTTACAATGATTCTCAT---GTA AGTT---------TGCCCATTTAAAAAA---------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------TTTA-CTTAGAACAAAA---------GTTGAACTCCTTTTCCAAGC--ATTAC TGATTG-CAAATCTATATTGA----AGAA >Homo_sapiens AACGTCCATAACAGAATCACTA-AAAG--ACATCAA------------------------------ATTATTAT-----T ATTT--------------------AAAA---------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------TTTA-TTGAGAGGCAAT---------GTCAATCTGTTTTTTCAAACCTATCAG TGACTCTCTATTGTATATTGG----AGAA Dog31_LTR >ERV54-EC_LTR -------------------------------------------------------------------------------- ------------------------TGTTAAAAAC---------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AAGACAACA------------------------------------------------------------------ -------------------------------------------------------------------------------- -----------------------------------GGCCCAAAATGGAGTCACTTATGCTAAGCCCCACGTCACCAAACC GAGACTTAACTTAATT-ACAGTTTCGGCTCTCCCAGAAATGGAATCTTAAACCAGTCAATCAGGAATCACCTGATCAGCA C----TAGTTAGGTAATCTGCCTGATAGAC------------------CCCTGCCATC----CCCTAAAGGAAAGTAACC TTGCAATAACCAATCCAC-TTTTTTGCCTAGTATAACTTCCTTGTTCCTGCTCCCTTCTGCCTATAAAAGTCTTTCATTT TGTACAGCTCCTCGGAGCTCCTTTCTATCTGCTAGATTGGATGCTGCCCAATTCATGAATC-ATTGAATAAAGCCAATAA GATCTTTAAAAT-----TTACTCAGTTGAAT------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------TTTGT TTTTT-AACA---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- 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-------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------- >Canis_familiaris AAAACAGGCTGC--------------------CAGATT--------------TGGCC-ACGGG-------CCAGCATTGG CCAACTCT-GCTCT---GCAC---AGTTAAAAAC---------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AAGACAACAGGGGCTCCTGGGTGGCTCAGTGGCTGATCGGCTGCCTTGGGCTCAGGGCATGATCCCGGGGTCTGG GATGGGTTCCACAGCTGGGTCCCTGCAGGGAGTCTGCTTCTCCCTCTGTCTGTGTCTCTGCCTCTCTCTGTGTCTCTCAT GAATAAAATAAATCTTTTAAAAAAACAAGACAACAGGTCCAAAATGTAGTC----ACGCTAAATCTGGGGTCACCAAACC GAGATTTAGCTGA----TAGTTTCCA-CTCTCCTAGAAACGGAATCTT-AACCAGTCAGTGAGGAATTGCCTAAGAAGCA C----TCCTTAGGTAATCTGCCTGCCGGCCCCCTGTCCACCGCCCCTGCCCTGCCATC----CCCTAAAGGAAAGTGACC TTGTCAGGACCGACCTGC-TTTTTTGTCTGGTATAACTT-CTTGTTCCCA-TCCTTCCCACCTACAAAAGCCTTTCATTT TGTACAGCTTCTCAGAGCTCCTTTCTAGCTGCTAAGTGGGATGCGGCCCAATTCACGAATC-GCTGAATAAAGCAAACAG GATCTTTTCACT-----TTACTCAGTTGAGC------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------TTTGT TTTTTCAAGAGCCTGGTGGCAGTGGTAGGATACA-AGAGACTTC-------TTCAGGGA------------GCCAACCCT TTGAGTTCT----CTTTCTTGCCATTTCCAGGGTCTGTGGATAAGGTCCTCTGAGCTCCAAGCTCCGCTCCGGAAGAATT CCCGAGGTAATCGGCTTTTCAATCCAGGGCTGGCAGGTCAGTCTAAACTGGCCTTGACGGGATCCCTGGGTGGCGCAACG GTTTGGCGCCTGCCTTTGGCCCAGGGCACGATCCTGGAGACCCGGGATCGAATCCCATGTCGGGCTCCCGGTGCATGGAG CCTGCTTCTCCCTCTGCCTGTGTCTCTGCCTCTCTCTCTCTCTCTCTGTGTGTGACTATCATAAATAATAAATAAAAATT AAAAAAAATAAGTAAATAAACTGGCCTTGACTGGTCCCCTGGTTGGTCCATGGTCCCAGTCCAAGGCTTAGCAGATCAGC TTGAGCTAGCAGATAGATGCCCCCTGGATCCCTAGCCCC-------TGGTTAGTTCCTAGTCCCCA-TCTGTTGGGATCT GCTCATTTGGCCTAGAGATCCACACTGGGAGCTGCTGGTGCTGCAC-ACCGAAGGTCTTCCCTTGGCCGGTC-------C ACGGTACCATCTCTCTGGTTACTGCTAAAGTCCTGAGCT--GTTTCCTTGGTTACTGCTGGTCTGTATTACTGTGCAAGT GAAGTAAAGGAGTAATAGATCCACTTTTAACAGGAATCCCAGAAGCCAAAGCTGCAAAATTGGTGGGCACAGCAGGCCAA GCAGTGAACAGCTGTAGGAGTGCTTGCCACGTAACTCTAAGGCTCTTGTGCTAGGATAAGCTGGTCACAACATGGGTTAG ATGGACTCCAGGACACCTGCCCACCTCAAGAAAATTTCCATGCAACAAGGTACAAGGTAAAGAGCACCATCCAATCCCCA ACCCAGTGGCACATTGCTCTTAGGTATTAATTTGGCTCCAAGGGACCAAAGGCTTAGCTAAGGAA-TGGTATCCCTCTAG TCTCAAAGACTTGAGCATGCCAACTTCTGGTAGACCTGCTTGTTTTATACCTAAGAACTATGGTCTTGAAAGCTGTAGAT ACCTCCAAGAAATGACAAAAATCTCATGAAGACAAGCTAGAAGTACAATGGCCATCATGGAGAAGACAACATCATTCAAG ATTTCATT------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------TGAAAGCAAGGGTTCCCAAATCAAACAGAATAGGATACCTATTTTGATTGGCAT GCAGAAGCC------------------TCCAAAATTGCTTCATTGAAAGATTGTTTGCAAAAGGTTAATAAAAAATCAAA GACATAAGAGGTACCTAAAACAAAAGACTAAGATGTCACTCCTACTGCTCCCCTCTAA---CCTTTATCTGAAATACTC- -GGTCTGCAGATCCTCTGCCTGAATTGCCTTTTCACTAGGCAGAGTTGGCCTGGGACCCTGGGTGGCTCAGTTGGTTAAA TGTCTGCCTTCAGCTCAGATCACGATCCTTGGGTCCTGCACCGAGCCCTTCATCCTGCTCCCTGCTCAGCAAACAGCCTG TTTCTCCCTCTATCCCTCCCCCTGCTCATACTTTCTCTTTCACATGTTCTCTCAAATAAATACATGAAATCTTAACAAAA AAACTGAGGTCAGCCAAACTAGTGGCCTTACAGACACCCCCATATCTATCCTTACAGACCTTTCATATGGGCCCCTCCCA GGGTTAGCGGGACTCTGAGAGATTTCTCTGGTAAATTACTACCGGAAAATAACTACCAGTTATTCCCTTCAACAACCAAG GGGAAACTAAAATTGAAATTAATGGAAATCCTTACCAAATTGTAGTAGATACTAGAGCTATACTCCTCTCTACTTTAAAC CCTACTCTGGAGCCTCTAGAT-AAACTGTGGGAAAACTGGCAGAAGTTGGCAAAGGGTGATCTGTGTGTCTCA------- -------TTCTGTGTCCTGAGAATTGTCTAAGTC-TTCTCCCTTTTGGCTGGGGGCGGGGTGGGGTGGGGGGTGCCAGTA GCATCCTTTGCAAGCCCCCCCTGGGAATGCCTCTTGTATCCAA---GGGTGGAGAGGGATGGTTCAGGACTGCCAGGACT ATTCTTTCCAGCTGTTTTTCCCAGCTGAAACCTGACAAGCTATTTAAAAGGA---TTTTTTAAGTAGCTCTGTGGTCAGA AGTTGGCCAAATCGGAA---GATATTCAG-ACCTGATAGTAACGGTTTTTAGCTCC-CTCCTCTCAGCTAAGCTTACCCA AAGAGGGGAAGGAACACATCGGGAAGACAAACCTCTAAATCTAGAACATAGGAATCTTTTTAAAGATTTCCATCTTATTT GAATATCTCCTCCCTGTATAAAAAGACACGAATTGACAATAAGGTAGTTGGGCAGGAGGGTCAGCCCTTTTG-----ACT TTAAGTCACAACCCCATCCTTCGAGGAATTAA-------AGCCTTTGTCTTCCAAACTGAGTCTTTACAAGAATGCAAAT ACAGCTCTGGAGGCAATTCAAAATCCACTTATCCTTTTAACCAATCCCCAAAACTCACCCATTCATCTCAAAAGGCTCAC AAA----ATTCAAGATTTAGGAAACAGAAATCCTTAGAAGGAGGAGCTTGCATTCTCTCCCTGTGCTTTTGAGATGTAAA TGTTCTACATGGTCTCT---CTAGGAACTGAGGTAATTCTTATCAGAAGGGGGGGGGAAGTTGCGGCAAGGATATTCGAA AAGGAGGGAAATGAAAAATCCT---------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------GA AAGTCTTCTCTACAAATATTGGTAAAAAGTTTAAACCATCAGAATGGGTAACCTTAACTTATTGCAACTTCTAGAAACAC AATTTGGATCTAGCTGTTCTTTTAGAAACTAGTGAG-------TTACTGTACCCA---------TCTTGTGCTTAAAATT ATAAAACAACAGCTGTAAGGTCTGTTTGTGTCTGTGTGTATGT--------------TACATATGCTGTAGATGTGTGA- -----TTTAAAAAAAAAAAAACCTCTGGATGGTACTGCCAAAATTAATTTT----------------------------- -------------------------------------------AAAAAAGAGTAA------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------TTAAAGAGAAATAAGCA TTTACCAAATTAAATATTCTTAGACTCTTAGAAATAAAAGAACTAACCCGAATATTTTTCAGGTTTACCTGATTGGGGAT AGTCTTTGGCTTAAAAA--------------------------------------------------------------- ---------------------AAAAGCAAGTCTCAGCTTGTTGGTTTAATTAAAACAGGCATGTATTTAGAGCCACCAGC ATTAAATATACGACCTGTATTCTACCTGGGTTTTCTACTCAGATAGACTGTTCCCTCTGTTACAAAGTCTGTCAGCAAGA AAAATATCTTAGTATAATATTAGAGTTAACTTTGTTTAATGTTTGTAAAATTTTCATGGGTAATTTAA--ATGTTAAAAA CAGGGGTGCCTGGGTGGCTCAGTTGGTTATACGCAGCTGCCTTTGGTTCAGGACCTGGGATGGAGCCCCAGATCAGGCTC CCTGCTCAGTGGGGAGTTGGCATCTCCCTCCCCCTACCCCCTAACTCATGTTCTTTCTTTCTCTCTCTAGCAAATAAATA AAATCTTTAATAATAAATATA-TTAAAGA-------CAAGTGATTTAGATAGATGTAAGTAGGATAAAAGTTTTTAGAAT TTTGCTATA-----TTAAATGATGTATAG------------TCACTGAG----TAGATCATTTTCAAATAAAATA----- ---------TAATAACACATTAATTCTTGATCATAGGTGTATCTAATTTTACTTTTGG---CTTAATATAGAGAAACTTA AGGTATGTGGGTATGTTAGTAAAGATGTTTCATGCAACACTGAGAAATCCACTATGAGAAAGAATATACCCCTTCAAGTT ATGAAATGTCTTT-TACGTTTGTTGATCCACAGAATGGTAGCGTAGGAGACAGTCTGTGATTGCTTACTTCTTAGTTTTT GCTAGGAAAT-AGGATTCTGTGGATTAAGAATCCTAATAAATAGAAGTACCTGAACCTCCTTAGAAATAGCAAGGGTGAA GGAAAACAACACTATGTATT------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------AAGAGTAGGTAAGGAAAGTAAAATGACTGGTTGTTTCAGAAGGAGAAAAAACATAC ATATGGGACAAGATATGAATGGATATAAAAACAGTTGTAGGTTTGTGGAAATGGAATCCTGCAGAG-GGATTTTACATGT GATCAAATAGGCTAAGATTGGAATGGATTTATTTATTAAGTTTTTCTAATGAGTTTTAATAGCAAAAGTGCACTGGTACA AAATTAGAATTTGATTCTCTCCCTGCTAAAAGGACCGTGTTCTCTTGGACCTTTGGTATGCTTTAGATCAGAGATGGTGA AAGTTGCCTTATCTTTTAAGTAACCTGCCTGGGGATCCCTGGGTGGCGCAGTGTGCCCTGCCTTTGGCCCAGGGCACGAT CCTGGAGACCAGGGATCGAATCCCACATCAGGCTCCTGGTGCATGGAGCCTGCTTCTCCCTCTGCCTGCTTCTCCCTCTG CCTGCGTCTCTGCCTCTCTCTCTCTCTCTCTCTCTGTGACTATCATAAGTTAAAAAAAAAAAATTAAGTAACCTGCCTGG GCAGCAAAGATTTCACGTTTTAACCAAAATAACTTCC-TATGCTTCACATTG---TCATCAGCTCTTGGGTTACTTAAGA AAATCCAATCTTCTCAAAACTAAAAGAGCTAAATTTTGTTCACAGCTATGTAACCATCTGCATTTGCCTTTAACATCATT TTCTACTGTCATTTTGGTTAAACAGATAATGAAGTATTATTTCATAATGATCTGTGATCCTATTTAGTCAAA--CATTCA AACTGCTTGACGTTTTGACAACTTCCTAAAATCAAATTCTAAATGGGGGTTTTTCTCCATCTTCAAGTAACTCTGAAATT TCCCAGAGGGTCCCTGGAAAATCTCAAAGGATTTATCTCTCATCTGGTAAAATATCAAACTAATTAGGTTTATTTGCTAT TAAATTATGTGGGAAGCATTATCAAGT--AAGAGATA-CTAAACCTCCTTAGCCTATACCTGTATGAGCAAAGGTCATTA ATACAAGTGTTCTAGAAAATGTGTGATACTCTTAGAAATCTGATATGTCCCAGTATAATTTTATCAGTCATAAATGCAAT TATTACCTTAAAATGTTGTGCATCGCACAAATAACCAAATTTCCTTGTCATTTCCATTACGAAGAACCCTAACGATGAGC ATCTTTTAAGTCTTTTGACATTTACAGACTACTTACTGTTTTACTCTGATGCTTTTGCAGAAGTGAGACTCATGACAAGG ACCCTACCAGGAACTCCGGATCACTGACACGGCTGCCATATTACAAGGTATTGAAACGTGGGGTGCATATTTCACAGCTG AAGAAGGCCCCACCTGACATCTGGTCCTGTGCAAATGCTAGAGACCTCAAAATCAAATTGGCTATGAAGAGAAACAGCCA ACATCAAGGTAGACTGCTTCTGCCCAAGACATCAGAC-CAAGTGAGTTCCTCTCTATTCCTCCTTCCCTCCCTGACCATC CTTTTCCTAATTCTTAAA-----CAGGCCTTTATGATTCATTTGCCCATATTTTGCTCTGTTCTGGCCTGAAAGATAATG CCACTGTTCATATGCTCAGGGTGCTGCAAACAGCGATAGCCCTATCCCCAAACTACTGCTGGACTGGCCCCAGTGCTGCC GATCCTGTAGTTCTGCCAATCACATACTTCT--CTGATTGCCAAACACCTTGATTTCTCTGGAACTAAGTAAGTTCCCTC TCTATGAGGTCAGGTCCCT-----------------TTCCCCTGCCTCAGTTTAACAAGCCCAAACCCAGGGAACCCTGT ATCTGAGCTCTGTACCAAGAAGGGGACA-----TGAGAGTAACCAGAACAAAACTGCCTGTGTGGTCTACACAGACTTAT ATTTAACTGGCCTCC-TCGCTGTCACCTTCCCAGCCCTGAGCCACAAACTCAAGCAGGAATTACCAGGGGGCATTCGTGA CTACCTAGATAGCTTCCTTTGGTAGAT----CACTGGCTCTTGGCAAGGGTGAGTGCAAAAGAAGCTATTGCCAGGACCT CACCTTAACCCTTAAAGTTACGTATTGCAGAATTCCCTGTGAAAGTC-ATAGCTGCCAACAAAAAATCCCTGGACTCTCT AGCCAAAGTTGTTCTTGAT------------------TGTTGTTTCAGCAGAGCAAGGAAGTGTCTGCACTGTGGTCAAT GTTACTTGCTGCACTGAATGGACACTTTGGGGGAAGCTGAGCTCAGCTGCATAAGACCACTGTACACAGCCAGCGGGCTA AAGAAAGGGACTCCTTCAATGGGATTTGATCTTGATGGCTATGGGTTTTGGG-GACTATGGCTCTGAGGTACTCCAGACA TTGGGAATTGTCCTGCTTATAATAATCATAGGGGCATCTGGGTGGCACAGTGGAGTAAGCAGCCAGCTCTTGGTTTTGGC TTGGGTCATGTTCCCGG--------------------------------------------------------------- ------------------GGTCCTGGGATCAAGGCCC-TCACTGGGCTCTGTGCTTAGCA-------------------- -----------------------GGGAGTCTG-----CTTGGGATTCTCT---------------------------CTC TCCCTCTG---TCCTTCCTTCCACCTGCGCCCCCCCAAAG-------------------------TGTGCTCCATAATAA ATA-----------AATAAATCTTTT---AAAAAATCGTAATAATCTTCCTGGTT---------CACCGTATTCTC-TCA CAAGC---------------------TTTAAATGCATGTTCATGTTCACAGTCTCTCACAAGCTTTAAATGCACGTTCAT G----------------TTCACAGCCACTACCCACCAAGCAACTGATCTCATTGAGAATGGAACGTCGGGATGCCTGGGT GGTTCAG-------------------------------CAGTTGAGCGCCT----------------------ACCCTTG GCCCAGGGCATGATCC-----TGGAGACCCGG--GATTGAGTCCCACATCGGGCTCCTG--------------------C ATGGAGCCTGCTTCTCTCTCTGCCTATGTCTC---TGCCTCTCTCTCTCTCTGTGTCT--------------CCCATGAA TAA----ATAAAATAT------------------TTTTAAAAAGAGAGAGACA------------------------GAA TGG--------------AACGTCAGAAAGA------------------------------------------------AA TGAAGAGAGGGACT---------------------------------------GAAT--------GTGAACA----TGAA CCTATAGTCATG----------------------------ACTTG-TGAATAACACA----------------------- ----------------------CCAAAA-----------------------GTCAGCAAAAAAA---------------- ------CACCATCACC---------------TGTGAATATCAACAGATTTGGCAA---------------AACTCAACTT CCAAGTGG-------TGACTGTGAGTAGCGCTAA-----------------TGTCATAAACTTTGATCACATCTCTCAG- ----GTTTATTAGCGTCTG------------------------------------------------------------- ---------------ACCAAAACAGGGAATTGATAAAAATAAAAAATAATGAAATAAAAATTAAAACAAAACAGGCCCAT GTCACCAAACTTCACAGTTTCCACTCTCCCAGAAATGGAATCTTAAGCCAGTCAATGAAGAATTGCCTCATCAGCGCTAA TTAGGTA--------AACAGACCCCTGCCATCCCTTAAAGGAGAGTGACCTTGTC--ACTAATCGGCTTTTTTGTCTACT ATAACTTGATTGTTCCTTCTCCCT--------------TCTTCCATTTTCTACAGCTCCTTGGAGCTCCTTTCTCTACGC AGGATGGAATGCTTCCTTGTTCACAAATCATTGAATGGAGCCAG-TAAGATCTTTAGAAAATTGACCCAGTTGAGCTTTG TTTTTTAACA---ACAC---CATGAAGGGAAATAGCTACTCCTAA------ATGATTCT----------ATCAGTGCA-- -CCAAAATA >Felis_catus AACACAGACAGGGAGC----------------CGGATT--------------TGGCCCGCAGG-------CCATTGTTTG CCAACCCCTGCTCT---ACGC---TGTT-----G---------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AAAACAACA------------------------------------------------------------------ -------------------------------------------------------------------------------- -----------------------------------GGTCCAAAATAGAGTCACTTGCACTAAGACCAGAGTCACCAAACT GAGACTCAACTGA----TAA-CTGTA-CTCTCCCAGAAATGGAATATTAAAC----CAGTGATGAACT----AATAAGCA CTACTTACTTAGGTCACCTGGCTGACAGCC------------------CTCTGCCATC----TACTAAAGGAAAGTGACT TTGTCGTGACCAACCTGCTTTTTTTGTCTAGTATTACCTCCTTGTTCCCATTCCCTCCCACCTACAAAAGCCTTTCATTT TGTACAGCTTCTCAGAACCCCCTTCTATCTGCTGGATGGGAGGCTGCCCAGTTCACCAACT-GTTGAATAAAGTAAGGAC GATCTCTGCACT-----TCATTCAGTTGAGTTTGGGGTTTTTTTTAATGCTGATTTTATTTATTTGGGGGGGGGGTACAG AGAGAGACAGAGAGACAGAGAGAGAGAATCCCATGCAGGTTCCATGCTGTCAGTGCAGAGCCCGACACAGGGCTCGATCC CATGAACTGGGAGATCATGACCTGAGCCCCAGTCAAGACTCGGACACAACCAAATGAGCTACCAGGTGCCCCAAGTTTGA GTTTTTAACAGTTTAGTGGCAGTGGTAAAACGCAGAGAGACCTCCGGCCCCTTCAGGAATGGGAAACATATGTGGACCCT TAGACTTGTCTAACTTTGTTGCCA-TTCCAAGGCCCGTGGATAAGATCCTCTCAGATCTGAGCTCTGCTTGTGTTGAGCT CCCGGTCTGCTTGGCTTTCCAGGCTAGGATTCTTGGGTCGGTCTCAA-TGGAC-TGA----AGTCTCTAACACAGCACCA GGC----------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------CAGTCCTCGTCCAG-------------GGC TTGAGCTGGCAGAGGGT-TCCTCCTGAAACCCGAATCCCCAGCGCCTGGTTAGTCCCTTGTCCC--ATATGTTGCCGTCT ACTGGTTTGGTCCATAGTTCCACATTGGGAGCTGCTGGTGCTGC-TCACCTAAGGCCTTCTCTTGGCCGGCCCACAGTCC ATAGTACCATGTCTTTGGTTACTGCTGGCATCCACAGCTCCACATCCTCAGTTACTGGTGGTTTCTGTTCACGTGCACGT AACGTAAAGGAGTAATACATCCATTGTTACTGGGAATCTCAGGAGCCAAAGCTGCAAAACCGACGGGCACGGCAGGCCAG GCACTGAAAAGCTGCTGGGGTGCTCACCACCTAACTCGAAGACTCTCGTGCTAGGATAAGCTGGTCACAACATGGGCCAG A----CACCAGGCCACCTGCCAACCTCAAGAAAATCCCCCTGTAATGAGGTACAAGGTAA--GGCACCATACAATCCCCA GCTCGGTGGCACATCCCTCTTAGGTATTAATTTGCCTCTGAAGAACCCACAGCTTGGCTGAAGACAAAGAGATCCTCTAG ATTCAAAGACTTGAGCATGCCAACTTCTGGTACACCTGCCTCTTTTATCCCTGAGAATTATGGCCCTGGAAGCTGTAGTT ACCTACAA-AAATGACAGA-CTCTCACTAAGACAAGCCAGAATTACAATGGCCATCATGGAGAACACTCCAACTAGACAT CATTCGTTTAAGAAATGCACTTGAAAGGGGCACCTGGGTGGCTCAGTCGGTTGGGCATCAGACCTTGGCTCAGGTCATGA TCTCATGGTTTGTGAGTTCGAGCCCCACATCGGGCTTTGTGCTGACAGCTCAGAGCCTGGAGCCCGCTTCAGAGTCTGTG TCTCCTCCTCTCTCTGTCTCTCCCTCCCTTGCTCATGCTCTATCTCTGTCTCTCAACAAATAAATGTTAAAAAAAAAAAA TTAAAAGAAAAAAAAAGAAATGCACTTGAAAGCAACGGTTCCCAGGTCAAACAGAATGGGATACCTATTTTAATTGGCAT GCAGGAGCCTCCAAAAGGCTTCAAGATTCCAAAATCGCTTCATTGAAAGATTCTGTGCAAAAAGCTACTACAAAATTGAG GACACAAGAAGTACCTAAAACAAAAAACTACGATGTGACTCCTACTGCTCCCCTCTAGTCTCCTTTACGTG-AGCACTCA GAGTCTGCTAATCGTCTATCTGAACTGCCTTGCCACTCTGGAGAG----------------------------------- -------------------------------------------------------------------ACCGCACAACC-- ------------------------------------------------------------------------------GT AAACAGAAGCCTGCCAAACTAGTGGTCTTCCAGACGCCCCCATATCTACCTTTGCACAC--TTCACATGGGCCCCTCCCA GGGCTGGCGGGACTCTGGGGGACTTC-CTGGTG-----------------AACTACTAGTTATTCCCTTAAACAGCCAAA GGGAAACTAAAATTGAAATCAATGGAAATCCTGGCCAGATTCTGGTAAATACTAGAGCTATACTCC---CTACTTAAAAC TCTACTCCAGAGCCTCTAGATGGGATTGTGGGAAAACTGGCAGAAGTCAGCAAAGGGTGACATGTGTGTCTTCTGGGAAG TCTTGTTTTTCATGTCCTGAGAACTGCCTAAGTCTTTCTTCCTTTTGGCTA-----TCTCTGGGGTTGGCAGAGCGAATA GTATCCTTTTTA--CCCTCCCTGGGAATTCCTCTTACATCCAAGGGGGGTGGGAAGGGACTATTCAGTACTGCCAGGAAT ATTT------ACTGCTTTTCCCAGCTGAAACCTGACAAGCTATTTGAAAGGATTTTTTTTTAAGTAGCTCTGTGGTCAGA AGTTGGCCAAACTGGAAGCTGATACTCAGAACCTGATAGGGACTGTTTTTAGGACCTCTCCCCTTAGCTAAATGTACCC- -AGAGGCAAAGAAAAACATTCCAAGGACAAAGTTCTAAATCTAGAACACAGGAATCTTTT----GATTTCCATCTTAGTT GGAGATCCTCTCCCAG-ATATAAAGACACAAATTAAAGATAATATAGTCGGGTGGGAGAGTCAGCCCTTTTGAAATCATT GTAGATCACAACGCAATTCTTT-AGGAATTAAGAACAACGGTCCTTGTCTTACAAACTGAGTCTTTATGAGAACAGAAAT GCAGCTCTGGAAGCAATTCAAAGCCTACCTATCCTTTCTACC-CTCCCCAAACCTCA-CCACTCTCCTCAAAAGGCTTGC AGGTATCATAAAAGATTTAGGAAACAAAAATCC-CAAAGGGAGGAACT--CAATCTTTCCCTGTGCCTTTGAGATGTAAA TGTTCTATCTGGTCTCTAGGCTAGGAACTGAGGTCATTCTTATCAGTAGGGGGGAAAAAATGG-GGC-AGGACATTTGGA ACCCAGGCAAATGAAAAATCTTAAAAGTCTTCACAGGGGCACCCGGGTGGTTCAGTCAGTTAGATGCTTGACTTCAGCTC AGGTCATGATCTCATGGTTTGTGAGTTCAGGCCTGCGTTGGGCTCTGTGCTGACAGCTCAGAGCCTGGAGCCTGCTTCAA GATTCTGTGTCTCCCTCTCTCTCTGCCCCTCCCCCACTCATGCTCTGTCTCTCTGTCTCAAAAATAAACATGAAAAAAAA AAGTCTTCTCCACAAATATTAGTAAAAAGTTTAAGCCATCAGAACAGGTAACCTTAAGTTATCCCATCTTCTAAATCCAC AATTTGGATCCAAGTGTTCTATTGTAAACTAATGAGCTCTGCATTGGTGTACCAGTTAAAATTTTTTCATGGTTAAAATT TTAA---AATAGCTGTAAGATGTGTTTGTGTCTGTATTTATGTTTATATATGTCTAATATGTATACTGCAGATGTGTGAT ATTTCTCT------------GTCTCTGGCTGGTACTGCCAAAATTATTTTTTTTTTAATTTTTTTTTCAATGTTTATTTA TTTTTGGGACAGAGAGAGACAGAGCATGAACGGGGGAGGGACAGAGAGAGAGGGAGACACAGAATCGGAAACAGGCTCCA GGCTCCGAGCCATCAGCCCAGAGCCTGACGCGGGGCTCGAACTCCCGGACCGCGAGATCGTGACCTGGCTGAAGTCGGAC GCTTAACCGACTGTGCCACCCAGGTGCCCCCAAAATTATTTTTTTAAGGTCTATTTAATTAGTTTAAAGCAAAATAAGCA TTTACCAAATTGAGTACTTCTAGACTTTCAGAAACATAAAATCTAACCCAAATGTTTTTCAAGTTCACCTGATCTAGGAT AGTCTTTGGTTTAAAAAAGAGAGAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAAAGAGAGAGAGAAAGAGAGAGAGAGA GAGAGAGAAAGAGAGAGAGAGAGAAGCAAGTTTAGGTTTGTTGGTTTCATTAAAACAGGCATGCATTTACAGTGA----- --------------TTTTATTCTGCTTGGGTTTTCTAGTCAAATAGATTAAT-GTTCTGTTAC---GTTTGCCAGCAACA AAAGTAACCTAGCATAATGC-----CTAATTTTCTTTAGTGTCTGCAAAATTTTCATGAGTAATCTAAATATGTTAAAAG CA----------AGTGATTTAGATAGATGTAAG----------------------TAGGATAA-----------AAGTTT CCAGGTGAA-----------------------------------------------------CTTTTCAGCGA------- -------TGATTATGAGTATACTTACAGAGTTTCCCCAAATATTTTTGATAACT----------TGAAACTTTATAG--T TTTCCTACATTAAGTTAAATGGTACATAGTGAACATTTAGATCACTTAATATCTAGATCATTTTCAAATAAGATAAAATA ATGAAACATTAATGAAACATTAATTATTGAACACAGGTTTATCTACTTTTACTTTGGGTTTCTTATTGTAAAGAAACGTA AGGTATGTGGGTCTATTAGTA---ATGTTTCATACAACATTGAGAAATTTACTGTGAGGCAGAATAT---TCTATAAATT ATGAAGTGTATTTGTGAGTTCACCGATCCACAGAATGCTGGTGTAAG----AGTCCACAATTACATACTTCTTAGTTCTC ACTAGGAAATAAGGACCCTGAGCTTTAAGAATTTTAATCAGTGTATGTACTTGAAACTTCTTAGAAATAATAAGGGTGAA GGGAAACA--AGTGTGTATTAAGAGTAGGCACGGGGGGGCGCCTGGGTGGCGCAGTCGGTTAAGCGTCCGACTTCAGCCA GGTCACGATCTCGCGGTCCAGGAGTTCGAGCCCCGCGTCAGGCTCTGGGCTGATGGCTCAGAGCCTGGAGCCTGTTTCCG ATTCTGTGTCTCCCTCTCTCTCTGTCCCTCCCCCATTCATGCTCTGTCTCTCTCTGTCCCACAAATAAATAAATGTTGAA AAAAAAAATTAAAAAAAAAAAAAAAAGAGTAGGCACGGAAAGTAAAATGACTGGGTCTTCCAGAATGAGAAAAA----AC ATATAGGACAAGATCTGAATGGGTATGAAAAAAATTGTAGGCTTTTGGAAAAGGAATCTTGGGAAGAGAATTTTGCCAGT GGTCAAGTGGGCTAATACTGGAATGGATTTAT---TTAAGGTTTCCTAAAGAGCTTTAACAGCAAAAGTACACTGGTACA AAACTAGAATTTGATTTTCTCTCTGCTAAAAGGACAGCTTTCTCTTGGACTTTGGGTATGCTTTAGATTAGAGATAGTGA AGGT----TTATCTT----------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------TTATGTAATCTGCCTGG CCAGCAAAGCTTTTTTGTTGTAACCAAAATAATTTCCGGGCGCTTCCCATGGTCTTCATCAGGTCTTGGATTACTTAAGA AAATCCAATCTTCTCAATAGTAAAAGAGCTAAATTTTGTTCACAACTATGCAACCTTCTGAATTTGCCTTTATCATCATC CTCTATTGTCCTTTTGGTTAAACAGATAATTAAGTATTATCTCATGATGCTCTGTGATCCTATTTAGTCAAATGTGTTCA AATTGCTTGATGTTTTGACAACTTCCTAAAATCAAATTCTAAATGGGGGCTTCTC-CCACCTTAAAGTAACTCTGAGATT TCCCAGAGGGTCCCTGAAAAAATTGCAAAGATTTGTCTCTCCCCTGGTAAAATATTAAACTAATTCGGTTTATTTGCTGT TAAGGTACATAGGAAGCATTATCAAATACAAGGGATGCCTAAACCTCCTTAGTTTGTATTTACATGGATGCAGGTTATTA ACATAAATGTTCTACAGACTGTAAGAAATTCCTAGAAATATGATGTGTCCCAATATAATGTCACCAGTCATAATTCCAGT TAT---CTTAAAATGTTACATATAGCACAAATAACCAAATTTCCTTGTCATTTCCATTATATTGAA-CCTAACAATGAGC ATC-TTTAAGTCTCTGGGCATCTGCAGACAGC-CACTGTCTCACTCTGATGCTTTTGCAGAAGTGAGACTCATGAAAAGG ACCCTACCAGGAACTCCTGATCACTGACGCCACCGCCAAATTACAAGGCGTGGAAAC-TCAGGTGCATATTTCACAGCTG AAGAAGGCCCCACCTGACATCAGGTCCTGCGCAAATGTTGGAGACCTCGAAATCAAACTGA----GAAGAGAAGCGG--- -----------------------CCAAGACCTCAGATGCAAGAGTGTTTCTTTCCATTCCTCCTTCCCTCTCT----ATC CTCTTCTTAATTCTTACAGTACGAAGGTCTTTGTGATTCATTTGCACATATTTTGCTCTGCTCTGGCCTGAAAGATAATG CCATGGTTCATATACTCAAGCCATTGCAAACAGGGATAATCCAACCTTGACACGACTGCTGGATTTGCCATAATGCCGAC AATCCTGTAGTTCTGCCCATCACACACGTCTCCCTGATTGCCAAATGCTTCAGTTTCTCTGGAACTGAGTCAGCCCCCTC TCTATTAAGTCAGGCTCCTCAACCCCTGGGGGTCTATTTCCCTGCCTCAGTTTAAGAACCCCAAACCCAGGGAACATTGT GTCCAGGCTCTGTACAAAGAAAGGGACACAAAGCAAGGGTAACTGGAACAAAAGTGCCTGTACGGTCTAGAGTCGCTTAA ATTTCACATGCCTCCATGGCTGTCACCTTCCCAGCCTTGAGCCACAGACTCAAGCAGGCATCGCCAGAGGGCATTCATGA CT-CCAAAATAGCTTCCTTTGGTAGCTGCTCCCCTGGCT------AAGAGTAAGTACAAATGAGGCTACTTCCAGACCTT CACCTTAACTCTCGAAG----GTGTTGCAGAAGCCGCTGTTAAAGCCAATAGCTGCCAAC-CAAAATTCCTGGGCTCTCT GGCCGAAGTTGTTCTTGATAATACGAGAGCCCTCGACTACTGTTTTGGCAGAGCAAGGAAGTGTCTGCACCGTGGTTAAC GCCACTTGCCGCACTGAATGGACACTTCTGGGGAAGCTGAGCTCAGCTACGGAAGATCACAGAACCAAGCGAGCTGGCCT AAGAAAGGGACTCCTTCAATGGGACTTGA-CTTGTTTGGTTTGTGTCTTGGGAGACCATGTCTTTGAAGTACTCCAGACA ATAGGAATGATTCTGCGTATAATAATCATAAGA--ATCTTCCTGGTGCGCTGTGTTCTCCCACAAGCTTTAAGT----GC AT-GTTCATGTTCGCAGCTGCTAACCGCCAAGCAAGTGAGGTCACTGGGAATGGAACATCGGAAAAGTAATGAAGAGAGT GGCTGACGTAAAGAATGTGAACCTGAAGTCATGACCTGTGACTGAATACCAGAATCAGCAAAAAAAAAAAAAAAAAAAAA AGTCATCACCTGTGAATACTGACAGAAATCAGCAACACTTGAGAACTTCTAAGAGGTGGCTAGGAGTAATGCTAATGCTT TAAATTTGGATCACATCTCTCAGGTTTAGTCTGATCAAAAGAGGGGAATTGTTTTTTTCTGGTTTTGTTTTTAATTTTAG TTAACATACTGTGCAATACTGGTTTTAGGAAGAGATTTCAGTGA--TTCATCGCTTGCATACAACACCCAGTTCTCATCA CAAGTGCCCTTAGTCCCCGTCACCCATCTAAGCCCAT-CACCTACCCACCTCCCTCCACCAACCCTCAGTTTGTTCTCTT ATTGTTTTCTTTTTCTTTTAACATTTATTTATTTTTGAGAAACAGAGAGCATGAGCAGGGGAGGGGCAGAGAGAGAGGGA GATACAGAATCCAAAGCAGGATCCAGGCTCTAAGCTGTCAACAAAGAGCCTAATGCAGGGCTCGAACCCACAAACCGTGA GATCATGACCTGAGCCAAAGTTGGGCACTTAACCAACTGAGCCACCCA-AGTGCCCCTGTTCTCTATTATTAAGAGTCTC TTATGGCTTGTTTCCCTCTTTTCTTCTTTCTCCCGTTCCCATATGTTCATCTGTGTTCATTCTTAAATGTGACATATGAA TGAGATCATAGGATATTTGTCTTTCTCTGACTTATTTCACTTAGCATAATGCACTCTAGCTCCATCCATGTCCTTGCAAA TGGCAAGGTTTATTTTTAACGGCTGAGTAATATTCCATGGTGTACATATTCCATACCTTCTTTATCCATTCATCAGTCAA TGGACATATGGGCTCTCTCCATAGTTTGGCTATTGTTGACGATGCTGCTATAAAAATCAGGGTTCATGTACACCTTTGAA TCTGTATTTTTGTATCCTTTGGGTAAATACCTAGTGGTACACTTGTTGGATCATATATGGTAGTTCTATTTTTAACTTTT TGAGGAACCTCCAGACTGTTCTCCGGAATGGCTGCACCAGTTTGCATTCCCACCAGTGTAAGAAGGTTCCCCTTTCTCCA CATCCTCGCCAACACCTGTTGCCTCTTGTGTTGTTAATTTTAGCCATTCTGACAGGTGTGAGGTGGTATCATCATGGTTT TCATTTGTATTTCCCTGATGATGAATGACGTTGAGCATCTTTTCATGTGTCTGTTAGCCATCTGGATGTCTTCTTTGGGA AAGTGTCTATTCATGTCTTCTGCCCATTTCTTCACTGGATTATCTGTTTTTTGGGTGTTGAGTTTGATAAGTTCTTTACT GAATTTTGGATACTCACCAAGA-GGGGAAATGTTAAAAATTAAACAT------TTAAAAATTAA---AAAACA------- ---------------AGTTTCTGCTCTCCCAAAAATGGAATCTCAAGCCAATCAATGAGGAATCACCTCATCAGCACTAA TTAGGTAGTTTTCCTGATAGACCCCTGCCATCCCCTAAAGGAAGGTGACCTTGTCTGGCCAATCTGCTTTTTTGTCTAGT ATAATTTCTTTGTTCTTCTTCCCTTCTCCCTATAAAAGTCTTCCATTTTGTACAGCTCCTCAGAGGTCCTTTCTATCTGT GGGACAGGATGCTGCCTGGTTCACAAATCGTTGAATAAAGCAAATTAAGATCCTTAAAAAACTTACTCAGTTGAATTTTG TTTTTTAACA---ACAC---CATGAAGAGAAACAGCTACTCCTAA------ATGACTCA-------ATCAACAGCGCATG CCCCAAATA >Manis_javanica CAAACAGGCTG-GAGC----------------AGGATT--------------CAGCCCACGGG-------CTATA-TTTG CCAACCCCAGCTCC---ACAC---TGTTAAAAAC---------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AAGACAACA------------------------------------------------------------------ -------------------------------------------------------------------------------- -----------------------------------GGCCCAAAATGGAGTCACTTGTGCTAAGTCCCACATCACCAAACC AAGACTTAACTTACTCAGAG-TTTCAGCTCTCCCAGAAATGGAATCTTAAGCCAGTCAATCAGGAGTCACCTGGTCAGCA T----TAACTAGGTAACATGCCCTTCGGAC------------------CCCTGTCCTC----CCCTAAGGAAAAGTGACC TCGTCATAACCAACCCACTTTTTTTACCTAGTGT------CCCTGGCCCCCCCTCTTCTGCCTGTGAAAGCCTTTCATTC TGTACAGCTCCTGGGAGCTCCCCC--ATCTGCTAGACGG-ATGCTGCCTACAT---GAATC-GTTCAACAAAGCCAGTAA GATCTTCAAAGT-----TTACTCAGTTAAAC------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------TGT CTTTT-AACA---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- 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-------------------------------------------------------------------------------- -------------CCAC---CATGAAGAGAAACAGATAGTCCCAAATAA--GTGATTCT-------GTCACCAAGGCA-- -CCAAAATA >Sus_scrofa GGCTGGGGCTGGGAGTGGAGGAGGGAAGCAGGGGGATT--------------TGGCCCTCAGG-------CCAGAGTTTG CCAAGCCCCACTCT---GGGC---TGTTAAGAAC---------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AAGACCACA------------------------------------------------------------------ -------------------------------------------------------------------------------- ------------------------------------ACCCCAAATGGAATCACTCACGCTAAGCCCCACATCAACTAACC AAGACTTAA-TTA----TAG-TTCTG-CTCTCCCAGAAATGGAATCTCAATGCAGTGGCTCAGGAATGGCCTGACCAGCA A----TAATCAGGCCCCCTGCCTGGTCGAC------------------CCCTGCCACCCCGTCCCCTACAGAAAGTGACC CTGTAGTCACCACCC----TACTTCATTCAGTGTAACTTCCTTGTTCCTGTTCCCACCTGCC-ATAAAAGTCTTTCATTC TATTCAGCTCCTCCAAGCTCCTCTCCCTCTTCTGAGGG------------ACTCACAGATCTGCCAGATAAAGTCAACGA AATCTTTAACAG-----TTACTCAGTTGAA-------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------TGTTAT TTTGT-AACA---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- 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-------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------ACAC---TGTGAGGAGACACAGATATCCCCAACGC---AGGCTCCC-------AAGGTCTATGCA-- -CCAAAGCA >Tursiops_truncatus AGACCAGGCTGGGAG-----------------CGGGTC--------------TGGCCCCCAGG-------CCAGAGTATG CCACCCCCTGCTCT---ATGC---TGCTAAAAGC---------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AAGACCATG------------------------------------------------------------------ -------------------------------------------------------------------------------- -----------------------------------GCCCCCAAGTGGAGTCACCTGTTGTAACCCT-ACGTCACCAAATG GAGACCTCA-TTA----CAGTTTCCG-CTCTCCCAGAAACAGAATCTTAACCCAGTGGGTCAGGAACCGCCTGACCAGCA C----TGGT-----CAGCTGCCTGGTAGAC------------------TCCTGCCACCCGTCCCCTACAGGAAAGTGACC CTGTAATAACCCACC----CACTCTGTCCAGCACCACGTCCTTGTCCCTGCTCCCTTCTGAGGATGAAAGTCCTTCATCC -GTCCAGCTCCTCGAGGCTCCTCTCCATCTGC-AGATGGGACACTGGCCGATTCATGAGC--GCTGAACAAAGCCAGTAA GATCTCTAACAC-----TTACTCAGTTGGA-------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------TTTTAT TTTTT-AACA---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- 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-------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------ACAC---CATGAACAGAAATAGACGTTCCTAAATAC--GTGATTCTATCT---AACATCGGTACG-- -CCAAAATA >Equus_caballus GGAACAGGCAGGGAGC----------------TGGATC--------------TGGCCTGGGGG-------CCGTAGTCTG CCAAGCCCTGCGCT---GCAC---TGTTAAAAAC---------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AAGACAACA------------------------------------------------------------------ -------------------------------------------------------------------------------- -----------------------------------GAACCAAAATGGAGTCGCTTATGCTAA-CCCCACGTCACCAAACT GAGCCTTAG-TAT----CAGCTTCAG-TACTCGCAGAAATGGAATCTTAAACCAGTCAGTCAGGAGTCACCTGGTCAGTA C----GAGTGAGGTCACC-GCCTGACTG--------------------ACTGACTGGC----CCCCAAAGGAAAGTGACC T-GCAATCACCAATCTGC-TTTTTTCCCTAGTATAACTTCCTTGTTCCTGCTCCTTTCTGCCT--AAAAGTCTTTCATTT TGTACAGCTCCTTGGAGCTCCTTTCTGTCTGCTAGATTGGATACTGTCCAATTCATGAATC-ACTGAATAAAGCCAAGAA GATCTTTAAAAC-----TTACTCGGTTGAA-------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------TTTTGT TTTAT-AACA---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- 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-------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------ACAT---CACGAAGAGAAATAGCTATTCCTAA------ATGATTCT-------ATCATCAGTGAG-- -CCAAAATA >Ceratotherium_simum AGAACAGCCTGGGAGC----------------TGGGTC--------------TGGCCCGCAGG-------CCATAGTTTG CCAACCCCTGCTCT---ACAC---TGTTAAAAAC---------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AAGACAACA------------------------------------------------------------------ -------------------------------------------------------------------------------- -----------------------------------GGCCCAAAGAGGAGTCGCCTATGCTAAGCCTCACGTCACCAAAGT GGGACTTAA-TTA----CAGTTTTGG-CTCTCCCAGAAACGGAATCTTAAACCAGTCAGGCAGAAATCGCCTGGTCAGCA C----CAGTGAAGCCATCTGCCTGGTAGAC--------------------CTGCCATC----CCCTAAGGGACAGTGCCA C-------ACCAACC----C--------TAGCGGAACTTCCTTGTTCCTGCTCCCATCT--------------TTCATTT -TGTAAGCTCCTCGGACCTCCTTTCTACCTGCTAGATTGGACGCTGTCCAATTCATGAACT-GCTGAATAAAGCCAGTAA GATCTTTAAAAT-----TTACCCAGTT----------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------------TTGT TTTTT-AACA---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- 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-------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------ACAC---CATGAAGAGAAATAGCTATTCCTAAATAC--ATGATTCTATCT---ATCATCAGTGCA-- -CCAAAATA >Myotis_myotis AG--CAGGCTGGGAGC----------------CGGGTT--------------TGGCCTGTAGG-------CTGTAGTTTG TCAACCCA-GCGCT---GCAC---TGT--AAAACGGGTGGGGAACCTTTTTTCTGCCAAGAGCCACTGGATATTTATAAC ATCATTTGAGGGCCAAAAATTATCAACTTAAAAATTAACCCGCTGTATTTGGTCAAACACTTAATTAACTCACCCCTGAT GCCTTGGCAGGGCCAGACCACATGATTTCTCGGTCCTTATACAGCCCTCCGGCCAGCTGTTCCCCGCCCTGCTGTAACAC ACACAAAGACAACA------------------------------------------------------------------ -------------------------------------------------------------------------------- -----------------------------------GGCCCTACATGGAGTCACTCGTGCTAAGCCCCAGGTCATCACACT GAGACTTA---------CAGTTTCAGCCTCGCCCAGAAGTGGACTCTTAAACCGGTCCATCAGGAGTCCCCTGACCAGCA C----CAGCGAGGACATCTGCCTGGTGGGT------------------CCCTGC-AT-----CCCTGAAGGAAAGTGACC TTGTCACAGTCAGCC----CATTTTTGCCAGAATGACGTCC---TCTCCGCTCCCTTCTGCCC------GTCTCTCCTCT TGCACAGCTCCCTGGAGTTCCTTTCTGCCCACT--ACGAGGTGCTGACTGATTCAGGAGTC-ACTGAATAAAACCAGTAA GATCTGTAAAATAAATATCACTCACTCGAA-------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------TCTGGT TTTTT-AACA---------------------------------------------------------------------- -------------------------------------------------------------------------------- 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-------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------AAAC---CATGGAGAGAAACAGATATTGTTAAATAA--ATGATTCTATCCATCATCATCAGTGCA-- -TC-AAATG >Rousettus_aegyptiacus AAAACAGGCTAGAAGC----------------CGTGTT--------------TGGTCTGCAGA-------CCACAGTTTG CCAACCCCTGCTCT---ATAC---TGTTAAAAAC---------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AAGACAACA------------------------------------------------------------------ -------------------------------------------------------------------------------- -----------------------------------GGCCCAAAATGGAGTCACTTATGCTAAGCCCCACATCACCAAATT GAAATATAACTTAATTACAGCCTCAGCTCCTCCCAGAAATGGAACCTTAAACCAGTTAATCAGGAATCACCTGACCAGCA C-----TGGGAAGGCAACTGCCTGGTGGAC-------------------CCTGCCATC----CCCTAAAGGAACGTGACC TTGCCACAACCAGCC----CACTT--GCTAGTATAACATCCTTGTTTCTGCTCCCTTCTGCCT--AGAAGTCCTTCATTT TGCAGAGCTCCTTGAAGCTCCGT-CTATCTATTAGACGGGTCGCTGCCCAATTCATGAATT-GTTTAATAAAGCCAGTAG GATCTTTAAAAT-----TTACTCAGTTGAA-------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------TTTTAT TTTT--AACA---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- 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-------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------ACAC---CATGAAGAGA---AGATATTCTGAAATAC--ATGATTTT-------ATC--CAATGCA-- -ACAAAATA >Condylura_cristata AAAATCAGCTGGGGAC----------------CAGATT--------------AGAACCATGGA-------CGAGAGTTTG CTAACCCCTGCTCT---GTAT----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- 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--------------------CA---GAGAAAAATGATACTCTTAA------ATGATTCT-------ACCATCAGTGCA-- -CCAAAATG >Sorex_araneus AAACCAGAGAGAGGGT----------------CGAATCACCCCAGGGTGGGATAGCCAACATGGGCGGCCCTGGCATGTG CCAAGCCCTGCTCT---GCAC----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- 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-------------------------------------------------------------------------------- --------------------AGTTAAGGGAAATGGGTATCAGGAAGAAATGATGATTCT-------GTCACCAATGCA-- -CCAAGATA >Homo_sapiens CAAACAGGT---GAAC----------------TGGATT--------------TGGTCCATGGG-------CCAC--TTTG CCAACCTCTACTGT---A-AC----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- 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-------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------CACAAAGAGTAACAGATATTCCTAAATCA--ATTACTGT-------ATCATCAGTGCA-- -CCAGAATG Dog34_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------GTTAATTAGCTTGATTGTGGT-AATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAA ATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------- >Canis_familiaris ATCAAAAC---CACAAATTTTAAAACATG--ACAATGT-----CC-AATTTCGCAAATTTC---AAAAACTCTCAGCTGA ATCT----------------CTTGTGGT-AATCATTTCACAGCATATGTAAAT--CAA----TCATGCTGTATACGTTCA ACTTATACA-TTAATGTATGTTAATTATTTCTTACTAAAACTGA---------AAAAAA-----CTCAACAG-TTC---- ---TTGTCTAAGTGTAGGC---TTTGACATTCCAATACGACACAGTATATGGT-TCTTACAGACAACTAA------TTCC TACCTTTCCTCTCAACCCAATATTCACATTCC--------CTTCCTTAACTTAAAAAAAAAAACAAAAC--AAACAAAAA AAACTGTATGCTTCTTTCATACAGAATGTTTCTCTCCTCATCCATTCCATAGGATCGTCACCTTCCAGAAAGCCTTCGCT TCCTTTCCTTTCTTTAAAATTTTATTCATTTGATTTGGGGGGGGGGGGGGGAGCACAGGCAGGCAGGCAGGCAGGGGGAG AGGGAGCAGCAGACTCCCTGCTCAGGGAGCCTGACATGGAGAGTTCATCAGTCCCAGGACTCTGGGATGACCTGCCTTCG GGCTGAGCCATTCAGGTGCCCCAAGCCTTCACTTTCTTGCTTTACTCATCAAACATACATAATCACTAGA---------- ----GTAGGTAAAATGCC-TCTTCTGTGAAC >Felis_catus ATCAAAATAAACACAAGTTTTAAAACATGAAAACATGAAAATGTCCAATTTCTCAAACTTC---AAAAAATTTGGGCTAA ACCT----------------AGTGTGATAAATCATTTCACAGTATATGTAAAT--CAAACCATCATGCTATACACTTCAA ACTCATACC-TTAATGTATGTCAATTTTTTCT------------------------------------------------ ----------------------------------------------------T-TCTTACAGACA----A------CTAC TCCATTTCTCTTCAATCTACTATTCACATCCCTTCCTTAACTTTTTTTTTTTTAA------------------------- ---TTATGCGCTTCCTTCATACAGAATGTTTCCCTCCCCATCCATCCCACAGGATCATCACATTCCACAAAACCTTTGCT TTCTT--------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------GCTCCATTCACCAACCATACACAATCATTAGA---------- --GAGTAGGTAAAATGCA-TCTTCTCTGAAC >Sus_scrofa ATGAAAATCA--ACAAGTTCTAAAACATA-AAAAATGT-----TCAAATTTCTCAAACTTT---AAAAATTCTCCACTGA ATCT---------------AATTGTAGC-AATCATATC-AGTTATGTGTAAAT--CAAGCCATTATGCTGTACCTCTAAA ACTTAAACA-GTGCTGTGTGTACATTAGTTCTCAATAAAACCAGAAAAAA---AGCCCAC----CTCAATGG-CACCT-- -CTTTTTCAAAATACAGGCTTGTTTGACACTCCCATTCCACATTTTAGATGGC-TTTTACAGACAATT-A------CTCC CACATTTCATTTAAATCTACTATTCACTTTCC--------CTTCCTTGCCTTTAAAAAA--ACCCCAA---AAAAACAAA AACCTATGTGCTTCCTTTATACAGAATGCTTCTTCCTACAACCATTCCATAGGATCATC-CATTCCAGAAGGACTTCACT TGCTT--------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------GCTCCAGTCATTAATCATACACAGTCATTGCA---------- --GACTAGGTAAAATGTC-TCTTTTGTAAAC >Bos_taurus CTCA-------CACAAGTTCTAAAACATG-AAAAATGT-----TAAAATTTCTGAAACTTT---AAAAATTTTCAGTTGA ACCT----------------A---TGGG-AATCATTTC--ATAATACATAAAT--AAAACCGTTATGCTGCACAACTTAA AATTACACA-GTGATATATGTAAGTTATTTCTTAATAAAAGCAGAAAAA----AAAAAT-----CTCGATGG-CTCCT-- -CTTTACCTAACTACAGG----TTTGACACTCCCATTTCACATTTTAGATGGT-TCTTATAATTAGTT-----------C TACCTTTCTTTTCAATCTAGTATTCAGCTTCC--------TTTCTCTGCCTTTAAAAACAAAATCAAACAAACAAAAAAC AATGGATGTGTTTCCTTTGTATAGAATGTTTCTCCCCACATTCATTCCACAGGATCATC-TATTCCAGAAAAACTTTGCT TTCTT--------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------GCTACACTCATCAATTATACACAGTCATTACA---------- --GACTAGGTAAAATGTT-TCTTCTGCAAAC >Myotis_myotis ATCAAATTAAACACATATTTTAAAGCATGAAAAAATGA-----TCGAAATTCTCAAACTTT---CAA--TTCTTAGCTGA ACCT----------------ATTGC------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------TGTTTCTCCCCACATCCATCCCACAGAATCATC---TTTCTCAAAGCCTTTGCT TTCTT--------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------G------------ATCAGTCTTAGTCATTAGA--------GA GTAGATAAATAAAATGCC-TCTTCTGTAAAC >Rousettus_aegyptiacus ATCAAAACAAACACAAGTTTTAAAACTTT-GAAATTGT-----TCAAATTTCTCAAACATT---AAA--TTCTCAGCTGA ACCT----------------ACTGTGGT-AATCATGTCACAAGACATGTAAAT--CAAACCATTACGCTGTATGCCTTAA ACTTATACA-GTGATGTATGTCAAGTTTCTC------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------AATAAAATGGC-ACTTCTGTGAAC >Equus_caballus ATCAAAATAAACACAAGTTTCAAAATGTG-AAAAATGT-----CCAAATTTCTCAAACTTT------------------- -------------------------------------------------------------------------------- -----------------------------------------------------AAAAATT----CTCA-CTGTCTCCT-- -TTTTGCATAAGTACGAGCTCATTTGACACTCTCATACCACACTTTATATGGT-TCTTACAGACAACT-A------CTCC TACCTTTTCCTTCAATCTACCATTGAACTTCC--------CTTCTTTGCCTTAAAAGAA-------AA---AAACAAAAA AACCTACGAGCTTCTTTTATATAGAATGTTTCTCTCCGAATCCATCCCACAGGATCATC-TCTTCTAGAAAGACTTCACT TTGTT--------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------GTGCCACTCATCAATCATACACTGTCATTAGA---------- ---------------GCC-TCTTCTGTGAAC >Ceratotherium_simum ATCAAAATAAACACAAGTTTTAAAATGTG-AAAAATGT-----TTAAATTTCTCAAACTTT------------------- -------------------------------------------------------------------------------- -----------------------------------------------------AAAAACT----GTCAACGG-TTCCT-- -TTTTGTCTAAGTACAAGCTCATTTGACACTCCCATACCACACTTTATATGGT-TCTTACAGACAACT-A------TTCC TACCTTTCCCTTCAATCTACTATTCACCTTCT--------CTTCCTTGCCTTTAAAAAA-------AA-------AAAAG AACCTATGTGCTTCCTT-------AATGTTTCTTCCCCAATTCATCCCACAGGATAATC-CCTTTTAGAAGGCCTTCACT TTCTT--------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------GCTCCACTCATCAATCATACACAGTCATTTGA---------- ---------------GAC-TCTTCCGTGAAT >Condylura_cristata ATCAAAATAAATACAAATCTTAAAACATGAAAAAAAAA-----T--------TCAACCTTA------------------- -------------------------------------------------------------------------------- -----------------------------------------------------AAAAACT----CTCAACGG-TTCCT-- -CTACTT-----GACGTTTTTCTATGACATTCCCAAGGCATACTTTACCTGGTGTTTTGAAGACAAGACAAAATTCTAAC TACCGTTCCCTGCAATTTAATATTCACCTTCC--------CTTCCCTGTCTTCTAACAA------------CCAAAACAA AACCTATGTGCTTCCAGT-CATAGACTGTTTCTTACCACATCTATCCCA----------------------GTCTTCAAT TAC----------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------CGTTCCTTAACCATAGTCATTAAA---------- --TACCAGATTAATTGCCTTCATCCACAAGA >Solenodon_paradoxus ATCAAAACAAATACAAGTTT-AAAAAATGAAAAATATT-----CAAATTATCTCAAACTTA------------------- -------------------------------------------------------------------------------- -----------------------------------------------------AAAAAAAAAAATTCAACAG-CACCT-- -CTTTGTTGAATGACAGGTTTATCTGACAATACCACA-CACATTTTATATGAT-TCTTATATACAAGT-A------CTTC TA----TCCTTTCAATCTACCATTCACCATCC--------CCTTTTCAAGTTAAAGACA-------AA-------GCAAA GAT----GTACTTCCTTTATACACAATGTTTCACCTCAGAATGATCCCAAAGGATCATC-CTTTCCAGAAAGTTCTCACT TTCTT--------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------GCTCCAATCATGGGT----CACAGTAATTAAACATCAATGCT TCGTAAAAGTCAAATGTC-ACATCTATAAAT >Cavia_porcellus ATCAAAATAGATACAATCTTTTCATTGTG-AAAATTTT-----TTTGGTTTTTCAAAATTA------------------- -------------------------------------------------------------------------------- -----------------------------------------------------AAAAA-T----CTCTA----TTTCT-- -CTTTGTTCAATGACTGGGTTACTG---ATACCTATACTATAGTTTAAACAAT-TGTTACAACTA-----------CTAC TCCTGTTTCCTTTAAAC----ATTTTCATTTC--------TTTCTTT--------------------------------- -----------TTCCTTAACACAGAACATTTCTCCT---ATCCATTCAATC---------CTTTACAGAGAACTTTTCCT TTCTT--------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------G--------ATTGCTCAAAACCACCCAATATA---------- CAGATCAGATCAAATGTC-TCTTCTGTAAAT Dog36_LINE >L1MA9_3END -------------------------------------------------------------------------------- --------------ATGAATAAGTTCTGGAGATCTAATGTACAGC--------------ATGGTGACTATAGTTAATAAT ACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTC---TCACCACACACAAAAAA----ATGGTAA CTATGTGAGGTGATGGATATGTTAATTAGCT---TGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCA CGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAAAAAAAAA------------------ --------------------------------------------------------------- >Canis_familiaris CACTTGTTTACCTTAATAAACAAACCTTCCTCCTGCTAATA--CTAACATCCTTTT---AAAACACAACCC---TGTAAA CTTGCAACTAGTAAATAAGTAAGCGCTAGAGATCT-CTTTACGAC--------------ATAGTGATTATAGTCAACAAT ACTGCATTATAAACCTCAAAGTTGCTAAGAGACTAGATCTTAATTGTTC---TCAAAA--CACAA--------ATGATAA TTATGTAACATGATAAAAGTATTAGCTAACA---CTACTATAGTAATCATATTGTAATATGGAAGTGTATCAAACCAACA CATTGCATACCTTGAATCTACACAG-TTTTATTTGTCCATTATATCTCAATTAAAAAAAA----------AATCTACAAC CC---T--AGGGTT-ACAAT----GTTGTTAATCTCTGCCTATTTGCTC-ACCCACCAAATAC >Felis_catus CATTTGTTTGTCTTAATAAACAAACCTTCCTCCTGCTAACA--CTAACATTCTCTT---AAAACTCAACTC---TATAAA CTTCCAACTAGTAGATAAACAAGTCCTAGAGATC-GATATGCAAC--------------ATAGTAATTACAATCAACAAC ACTGTATTATAAACTTCAAAGTTGCTAGGAGACTAGGTCTTAATTGTTC---TCAACAGGCACAA--------ATAATAA TTATGTGACATGATAAAAGTGTTAG-TAACA---CTACTATAGTAATAAT-----AATATGTAAGTGCATCAAACCATCA CGTGGTATATCTCAAATCTATGCGA-TGTTATATATCAATAACATCCCAATTAAAAAA------------AAAACACAAC TC---T--AGGGTTTACAAT----ATTAATGATCTCTGCCTCTTTGTTC-ACTCATCAAAAAC >Manis_pentadactyla CATTTGT----CTTAGTAAATAAACCTGCCTCATGCTAATA--CTAACTTCCTCTT---AAAACATAGCTC---TATAAA CTTACAACTAGTAGATAAGTAAATTCTGGAGATCTAATGAATAACTACTGTGTTAAAATACAGTGAT----ATCACCAAT ACTGTATTATAAATTTTGAAGTTATCATGAGACTAGATCTTAATTGTTCTATTTATTACA-ACAAAGAA----ATACTAA TTATGTAAAATAATAAAGGTGTTAGCTAACACTGCTACTGTAGTAACCATAATGCAATATATAAATGTATCAAACTAACA TTTTTTATACCTCAAACCTACACAG-TGTTATATCTCAATTACATCTCAATACCATACACACA-------CATACACATA TG---TCCAGGGTTTACAAT----GTCACCCATCTCTGCCTCTTTGCTTTG----TCAAGGAC >Sus_scrofa TATTTGCCCACCTTAATAAACAAATATTCCTTTTGCTAATA--GCAAATTCCTTTT---AACACTTAA--C---TATCAA TCTGCAACTAGTAGGTAAATAAGTTCTGGAGATCTAATGTGCAAC--------------CTAGT-ATTATAGTCAACAAT ACTGCATCATGAATTTCGAAGTTGCTAGGAAACTAGATCTTAATTGCTT---TCAGCACACACAAAAAAAACCATGATAA TTATGTGATGCAATAAAGGTGTAAGCTAGCT---CTACTGTAGTGATCATATTGAAATACATAAATGTATCAAACCAACA CTTTGTACACCCCAAACTTACACAA-TGTTATATGTCAGTT-------AATTAAAAAAAAAA--------AAAAAAAACC TC---T--AGGGTTTATAAT----GTTAACAG-CTCTGCCTC--TGTTTTGCCTATTAAAGAC >Bos_taurus TATTTGCTTGTCTTAATAAATAAATCTTCCTTTCGCTAATA--TTAATTTCTTTTT---AAAACATCA--C---TATCAA TTTGCAACTGGTAGACAGAAAAGTTCTGTAGATCTAAAGCACAAT--------------GTAGTGATTATAATCAACAAT ACTGTATAATAAAGTTCAAAG-TACTAAGAAACTAGATCTTAATTGTTT---CCAACA--CACAAAAAAAGACATGATAA TGACGTGATGTGATAAAGGTGTCATTTAGCA---CTACTGTAGTAACCATATTGCAATTTGTAAATGTACCAAAATAACA CTTTATATATCTCAAGCTTATGTAA-TGTTATATGTTGATT--------ATCAAAAAAAAAAAAAAA---ACACCCAAAC TC---T--AGAGATTAT-------GTTAACAGCCTCTGCCTCTTTATTCTGCCTCTCAAGGAC >Equus_caballus CCGTTGTTTGTCTTAATAAACAAACCTT-CTCCTACTAACA--CTAACTTCCTCTT------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------ATGGCGCAAT TC---T--AGGGTTT-CAAT----GTTAACAACCTCCACCTCTTTGCTCTGCCTACCAAAGAC >Ceratotherium_simum CATTTGTTTGCCTTAATAAACAAACCTT-CTCCTACTAATA--CTGACTTCCTCTT------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------AAGGCGTAAT TC---T--AGGGTTT-CAAT----GTTAACAACCTCTGCCTCTTTGCTCTGCCTATCAAA-AC >Myotis_myotis CATTCATTTGCCTTGAGAAACAAACCTTCCTCTTGCTAATA--CTAACTTTCTCGT------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------AAAATACAAT TC---T--AGGGTTTACAATATTAATTAACAACCTTTGCCTCTTTGCTCTACCTGTCAATGAC >Pteropus_vampyrus CATTCATTTGCCTTAATAAACAAATCTTCCTCTTGCTAAT------ACTTTCTCTT------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------AAAACACAAT TC---T--AAGGTTTATAAT----GGTAACAGCCTCTGCCT-------------AGCAAAGAC >Condylura_cristata GTTTTGTTTGTCTTTTCAAACAAACCCTTCTCTTATTAATG--CTAATGCCCTCTT------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------AAGACA---T TT---T--ACAGTTTACAAA-------ACTAACCTTTGCCTCTTTGCTCTG-CTAGTAAAGAC >Sorex_araneus CATTTGTTTGTTTAAGTAAATGAATTCTTATCTTCTTAATA--TTAATCTTATCTA------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------AACACACAAC TC---T--A---------------GTACTTAACCTATGCCTCTTTATTATATCTAGAAGATAT >Homo_sapiens CATCTGTTTGTCTTAACATGTAAACCTTCCTCTTACTGGTGTTCTAACTTCCTCTT------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------AAAACACAGC TC---T--AGGGTTTACAAT----GTT---ATCCTCTGCCT-------------ATCAAAGAC Dog40_LINE >L1_Carn7_ ----------------------------------------------------------------------TAACNTTGTA -TGGTGACAGATGGTAACTAGACTTATTGTGGTGATCACTTCACAATGTATACAAA------------------------ ------------------------------TGTCGAATCAC--TATGTTGTACACCTGAAACTAATATAACATTGTATGT CAATTATA-CTCAA--ATAAAAAAA------------------------------------------------------- ------------------------ >Canis_familiaris TTTTGTCCTATGCTTTGGGTCCTCTCCTCTCCATTTCCCTAAGATCGTGGGCTTGGT---AACT-CT--------ATGTG GTGATGG---ATGGTAAGTAGACTCAT--TGGTGATCATTTTGCAGTGTATACAAA------------------------ ------------------------------TATTGAATCAT--TATTTCACACACCCGAAACTAATATAATGTTATGCGT CAATTATATCTCAATACTAAAAAAAAAAAAAAA-------AAAACATT----AAA-ACCAAAGACAGCCTT-TGTTTCTA TTCTCTGACGTGATGTTAGCCTTA >Felis_catus TTTTTTACAATGCTTTGTGTCCCCTCTTCTCCATTTCCTTAAGGTTGTGGGCTT--T--------------------GTG GCGATGG---GAGGTAACTAGACTTACTGTGGCGATCATTTTGCGGTGTATACAAA------------------------ ------------------------------TATTGAATCAC--TGAGTTGTACACCCAAAACTACTATAATGTTATAGGT CAATTATAGCTCAATAATAAAA------------------AAAAGACT----AAA-GCCACAGAGAGCCTT-TGTTTCTG TTCTCCGGCACTGCATTAGCCTTA >Manis_pentadactyla TTTTTTACTATGCTTTGAG-----TCCCCTCCATTTCCTTAAGGTCCTGGGCTT--T---GTA-ACT--------ATGTG ATGACAG---AGGGTAACTAGACTTCCTGTTGTGATAATTTTGCAGTG-ATACATAATATCGCTGCATTAGGATATATAT TATGATATATGATACATATTCGATATATAATATCAAAGCATTCTATT--GTATACCTGAAACTAATATAATGT------- CAATTACACATCAATAATAAC-------------------AAAAAGCTT---AAA-GCCACAGGTAGCTTT-TGTTTCTC TTGTTTGGCACGACCCTCACCTTA >Sus_scrofa TTTTTTACTATACTTTGAG-----TCCTCTCCTTTTCCCTAAGGCTGTGGGCTT--T---GTA-ACT--------GTGTA -TGATAATGGATGATAACTAGACTTACCATGGTGATCATTTCTC-ATGTATGCAAA------------------------ ------------------------------TATAAAATCAG---ATGT-GTATATCTGAAACTAATATAATGCTACATAT CAATTATACCTCAATTATTTAAAAAAAAAGCAAAAAC---CAAAAGCT----AGA-GCTAAAGATAG--CT-TTTTTCTA TTCTCTAGCACCACCTTGGCTTGA >Bos_taurus TTTTTTACTATGCTTTGAG-----TCTTCTCCATTTCCCTATGACTGTGGATTT--T---ATA-ACT--------ATGTA -TGGTGA---TGGATAACTAGACTTATCATGGAGATCACTTCTCAATGTATACAAA------------------------ ------------------------------TGTCAAATCAT--CATGT-GCACAACTGAAGCAAATATAATGCTGCATGT CAATTATACCTCAACTTGGAAAAAAAAA------------AAAAAACT----AGA-GCTAAAGATAG--TT-CATTTCTG TTCTCTGGCACCCCCTTGGCCTTA >Equus_caballus GCTTTTACTATGCTTTGAG-----CCCGCTGCATTTCCCTAAGGTTGTGGGTCT--T---AAAGACT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------AAA-GCCACAGACAGCTTT-TGTTTCTA TTCCCTGGCACTCCCTTAGCCTTA >Ceratotherium_simum GTTTTTACTATGCTTTGAG-----CCCTCTCCATTTCTCTAAGGTTGTGGGTCT--T---AAAGACT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------AAA-GCCACAGATGGGTTT-TGTTTCTT TTCTCCAGCACTACCTTAGCCTTA >Myotis_myotis TTTTGTACTATTCTTTGAG-----TTCACTCCATTTAACTAAGGTTGTGTGCTT--T---AAAGTCT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------AAA-GCGACAGACAGTTTT-TGTTTCTA TCCTCTGGCACTACCTTGGCCTTG >Pteropus_vampyrus GTTTTTACTATGCTTCAAG-----TCCTCTCCATTTCACTAAGGTTGTGGTCTT--T---AAATCCT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------AAA-GCCACAGATAGCTTT-TATTTCTA TCCTCTGGCACTACCTTAGTCTTA >Condylura_cristata TGTTATGGCAT-------------TGTATCCTGTTTCCCCACCACTGTGAATTT--T---GAAGAC-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------AAACATCAC-GAAGGGCTTTCATTTCTA TGCTCTGCCACTACCTTTGCTTTG >Sorex_araneus TATTTTGCCATAGGTTGTG-----TGCTTTCCATTTCCCCATAGTTGTGTACTT--T---AAATATT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------AAA-ACCACAGATAGTTAT-TATTTCTA TTCTCCAACACTGTCTTA-CCTTA >Homo_sapiens TTTTTTTCTGTGTTTTGAG-----TTCTCCCCATCTCCCTGAGGTTGTGGGCTT--T---AAAGACA------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------AAA-GCTACAAATAGCCTTTTATTTCTA TTCTCTAGCACTATCTTAGCCCTT Dog40_LTR >MER34C_CF --------------------------------------------------------------TGAAGGGGAGCAGAATTT GCCACCCCAAAATATGCCTCTTTGGCATAAGGATTATTTTAGGCTG---------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------ATTATTTTTAAGAAACTGCAGACACAGG AGAAGCTCTGAAAACCGAGTAGAAGTTACCCTTTTGTAAGAGACATTTACATTTA--TAAGGGAAATCTCCATTTGTAAG GGTGTCTCCCTCTCT-----------------GTACCAGGAAGAGGAGGATGA-------------------CTCTAAAT CTCTAGAAACTCTTATCAATGGAGAAGGCAAGGACTTAAATCTGCATAACA-----ACCTTACCCTTGTTTACTGTGCTT TTCCTGGTAACCTCCCATAACTG--A-------------CTCCCCACCCCCAACATC-TTTTTTGTCTTTAGCTGGAGAT -GGTATTTAAGGTGATGGCTTGGGCCATTTCGGGG----AGTTACTCAGTTTTCCTGGGTC------------------- ---------TCTCCCATGTATACAGGAGGTATACATATGTTATTAAACTTTTGTTTGTTTTTCTCCTGTTAATCTGTCTT --ATGTCA--------ATTTGATTCTTAGACCAGCCAGAAGAACCTAGAAGGGTAGAGGAAA-ATTTT----TTTCTCCT CAACA----------------------------------------------------------------- >Canis_familiaris GAAATACCTAACCAGTTTATTATTGGGATTATAGCGTTTGGGTGGTCTGTAA---CATT---TGAAGGAAAGCAGAATTT GCCACCCTAAAATATTTCTTATTGGCATAAGAATTATTTTGGACTG---------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------AGTATTTTTAAGAAACAACAGATATAGG AATAGCTTTGGAAACT---TAGAAGTTACTCTTTTGTAAGAGACACTCA--------TAAGGGAAATCTCCATTTGTAAG GGTATCTCTCT---------------------TCACTAGGAAGGGAAGGAGGA-------------------CTGTACAT CTCTAGAAAATTTTATCAATAGAGAAGGTCACTACCTAAATCTGCATAACA-----ATCACACCCTAGGTTACTGTGCGT TTCCTGATAGCCTCCATTAAGTG--G----------CTCCTCCCATCTCCCAGCATC---TTTTGTCTTTAGCTGGAGAT -GATATTTAAGGTGGTGGCTCATACCACCTCAGGA----AGTTACACAGTTTTCCTGGGTA------------------- ---------TTTCCCATGTATACAGGAGGTACACA---GCTAATAAACTT--GATTGTTTTTCTCCTGTTAAT----CTT TTATTACA-------------CTGGGTATCTCAGCCA--AGAGCCTAGAAGGGTAGAGGGAA-AATTATTCTTTTCTTCC CTACA---CTAT---ATTTTTGAATCAAATAAATGTAATG-AAATGTTT----TAAAATAAGTATATTGT >Felis_catus GATATATCTAACCAGCTTATCATCAGAAATATCAAGTTTAG----TTTGTAA---CTTT---C---AGGAAGCAGAATTT GATACTGTAAAATATTTTTCTTTGGCATAAGAATTATTTTAGTCTGAGTTTTTTTAAGTTCATTTTTTTTTATTTTATTT TTGGGAGAGAGAGAGAGAGTGGCTCTGCCAGTGCAGAGCCTGATGCAGGGCTCACATTCAGGAATCATGAGATCATGACC TGAGCCAGAGTTGCATGCTTAACCAACTGAGCCACCCAGCGCACCTAGGCGAAGTATTTTTAAGAAACAACATATATAGG AATTGCTCTGCAAACTGAGTAGAAGTCTCCTTTTTGTAAGAGAC----AAATTTA--TAAGGGAAATCTCCATTTGTAAA AGTACCTTTCTCTCA-----------------GCATTAGGAAGAGAAGGATGG-------------------C------- -TCTCAAAGCTTTTATCAATAGAGAAGGTCACAACCAAAATCTGCATAACA-----ATTACACCCTTGTTTTCTGCGCTT TTCCTGATAGCCTCCCTTAAGTG--GCTCACTCTCCCTCTCACCCCCCACCCCCAACATCTTTTGTCCTTAGCTGGAGAT -------------GATAGCTAAGGCCATCTCAGGA----AGTGACTCAGTTTTCCTGGGTA------------------- ---------TTTCCCATGTATACAGGAGGCATACA---GTTAATAAACTT--AGTTGTTTTTCTCCTGTTAAT----CTT TTATTACA-------------GTGGGTGTCGCAGCCA--AGAACCTAGAAGGGTAGAGGGAAAAATTATTTTTTCCTTCC CTACA---CTTT---ATTTTTGATTCAAATAAATGTAATA----TGTTT----CAAAATAAGTATATTCT >Manis_javanica GAAATATCT----CTTTTGCCATTGGTATTACACAGTTTGGGTGGTCTGTAA---TTTT---TGAAGGGGAGCAGAATTA GCCACCCTAAAATATGTCTCTTTAGTATCAGCATTATTTTAGTCTG---------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------TTTATTTTTAAGAAACAGCAGACAAAGG AAAAGCTCTGAAAACTTAGTAAAAGTTACCCTTTTGTTAGAGATACTTATATTTA--TAAGGGAAATCT--AATTGTAAA A-------------------------------GTACCAGGAAGAGAAGGATGAATATAACTCTAGATTATCTAGATAAAT CTCCAGAAACTCTTATCAATGGAGAAGGCAAAGACGTAATTCTGTATAACA-----ACCATATCCTTGTTTACTGTGCTT TTCCTGATAGCTTCCCTTACTGGCTGCACCCCTTTCCCCCCAACCATCACTGTCATCTTCTTTTGTCTTTAGTTAGAGAT -GGTATTTAAGGTGGTAACATGAGCCATCTCTAGG----AGTTACTAGGTTTTTCTGGGTG------------------- ---------TCTCCCATGTATGCAGTAGGTATACAT--GTTATTAAACTAATGG----TTGTCTCTTGTTAATCTGCCTT TTATTGCA-------------GTGGGTATCTTGGCCA--AGAACCTAGAAGAGTAGAGGGGA-AATTA-TTTTTTTTCCC CTACG---TTTT---ATTTTTGAATCAAATAAGTGTAATATAAATGGTTGGTCCCAAATAAGTATATTCT >Sus_scrofa GAAATACC-AGCCGTTTTATCCTTGGTATAATAGAGTTTAGTTGCTCTGTTA---CTTT---TGAGGGGAAGTTGAGTTT GTCACCCTAAAATATGTCACCCTGAGATAAGGATTATTTTAGGC------------------------------------ -------------------------------------------------------------------------------- --------------------------------------------------------TTTTTAAGAAATAGCAGGCCCAGG AGAAGC--TGAAAAATGTACAGAAGTTACTCCTTTTTAAGAGGTATTTATACTTCATAAAGGGAAATTTATTTTTGTAAA GGTGTCTTCCTCCAT-----------------GTACTAGGAAGCAAAAGATAA-------------------C--TAAAT CTCTATAAACTCTTATCTAAGGAGAAAGCAAAGATCTAAATCTGTATAACA-----ACCTCATCCTTATTTACTGTGTTT TTCCTGATAACCTCCT-TAACTG--G--------------------TTCCCAACATTTTATATTATCTTTAGATGGAGAT -GGTATTTAAAGAGATGGCTTGGACCATTTCAGGG--------AGTTAGTTTCCTTGGGTC------------------- ---------TTTCCTAAATATATAGAAGGAATAGAT--GCTATTAAACTTCTGT----TTCTCTCCTGTTAATCTGTCTT TTCCTACA-------------GGGCATAACTCAGACA--AGAGCAAAGAAGGGTAGAGGAA--AATTT-ATTTTTCTCCA CTGAA---CTTT---ATTT--GAATGAAATAAATGTATTATTAATGTTT----CAAAGTAAGTATATTCT >Tursiops_truncatus GAAATATCTAACCATTTTATTGCTGATATAGTAGAATTTAGTTACTCTGTAA---CTTT---TGAAGGGAAGCAGAATTT GCTACCCTAAAATATGTCTCCCGGGGATAAGGATTATTTTAGGCTG---------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------ATTTTTTTTAAGAAACAGCAGACCTAGA AAAAGCCCTGAAAAGTGAATAGAAGTTACTCTTTTGTAAGAGATATTTACATTTA--TGAGGGAAACCTTCATTTATAAG AGTGTCTTCCCCCCGCCCCCCACAAACCCCATTTACTAGGAAGAGGAAGATGA---------------------CTAAAT CTCTAGAAACTCTTATCGAAGGAGAAGGCAAGGACTTAAATCTGTATAACA-----ACCTTATCCGTATTTACCG-GCTT TGCCTGATAACCTCCCATAACTG--G----------CTTCCCACCTC--CCAACATCTTATTTTGTCTTTAGCTGGAGGT -GGTATTTAAGGAGATGGCTTGGGCCATTTTGGGG----AGTTAATAAGTTTTCCTGAGTC------------------- ---------TTTTCCATGTATACAGGAAGAATACAT--TTTATTACACTTCTGT----TTTTCTCCTGTTAGTCTGT-TT TTCTTACA-------------AGGCATGTCTCAGCCA--AGAACCTAGAAGGGTAGAGGAAA-AATTA-CTTTTCCTCCC CTAAA---CTTT---ATTTTTGAATCAAATAAATGTATTATAAATGTTT----CAAAGTAAGTAGATTCT >Equus_caballus GAAATACCTAACCATTTTATTATTGGCATTATAGAGTTTGGATGGTCTGTAA---TTTT---TGAGGAGGAGTAGAATTT GCCATCTTAAACTGTCTCTTTGTC--ATAAGGATTATTTTAGCTGA---------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------CTATTTTTAAGAAACAGCCGACATAAG AAAAGCTCTAAAAACTGAGTAGAAGTTACCCTTTTGTAAGAGACATTTACATTTA--TAGGAGAAATATCCATTTGTAAA GGTGTCTCCCTCT-------------------GTCCTGGGAAGAGAAAGATGA-------------------CTCTAAAT CTCCAGAATCTCTTATCAATGGAGAAGGCAATGACCTAAATCTGCATGAC------AACCTTCCCTTGTTTACTGTGCTT TTCCTGATAGCCTCCCATAACTG--G----------CTCCCCC----CACCAACATCTTCTTTTGTCTTTAGCTGGAGAT -GGTATTTAAGGTGGTGGCCTGGGCCATTTGGGG-----AGTTACTCAGTTTTCCTGGGTA------------------- ---------TCTCCCGTGTATACAGAAGGTATACAT--ATTATTAAACTTCTGTTTGTTTTTCTCCTTTTAATCTGTCTT TCTTTTTA------------CGGGGGAGTCTCAGCCA--AGAATCTAGAAAGGTAGAAGAAA-AGTGA-TTTTTCCCTCT CTACA---CTTT---ATTTTTTAATCAAATAAATGTAATATACATGTTT----CAAAATAAATATATTCT >Ceratotherium_simum GAAATTCTTAACCATTTTATCATTGGCATTATAGAGTTTGGGTGGTCTGTAA---CTTT---TGAAGGGGAGCAGAATTT GCCACCTTAAAATATGTCTCTTTGTCATAAGGATTATTTTAG-CTG---------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------ACTATTTTTAAGAAACAGCAGACAT--G AAAAGCTCTGAAAACCGAGTAG--GTTACCCTTTTGTAAGAGACATTTACATTTA--TAAGGGAAATCTCCACTTGCGAG CATGT--------------------------------------------------------------------------- ----------------------------------------------------------------------------GCTT TTCCTGACAGCTTTGCATAACTG--C------CCACCCCCGCCCCCCACCCAACATCTTCTTTTGTGTTTAGCTGGAGGT -GGTATTTAAGGTAGTGGCTTGGGCCATTTTGAGG--------AGTTAGTTTTCCTGGGTA------------------- ---------TCTCCCGTGTATACTGGAGGTATACAT--GTTATTAAACTTCTGTTAGTTTCTCTCCTGTTAATCTGTCTT TTATTACA-------------GGGAGAGTCTCAGCCA--AGAATCTAGAAAGGTAGAAAAGGTAGGTA-TTTTTCCTCCC CTACA---CTTT---ATTTTTGAATCAA-TAAACGTAATACACATGTTC----CAAAATAAGTATATTCT >Myotis_myotis GAAATACCTAACCTTTCTATCATCGGCATTATAGAGTTTGG-TAGTCTA--A---CTTT---TGAGGGGGAACACAACTT GCCACCCTAAAATATGTCTCTTTGGCCTAAGGATTATTTTAGACTG---------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------ATTATTTTAAAGAAACAGCAGATATAGG AAAAGCTCTGAAAACTGAGAGGACTTTAGCCTATTATGAGA----------------TGAGGGAACTCTCCATTTGTAAG GGTGTCTCCCTCTCA-----------------GTACCAGAAAGAGAAGAATGA-------------------CACTAAAT CTCTACAAACTCTTATCAGTGGAGAAGCTACTGAC-------------------------------------CCGTGCTT TTCCTGATAACCTCCCATAATTG--G----------CTTCACCACTTCCCCAATATCTTCTTTTGTCTTTAGCTAGAGAT CTGTATTTAAGGTGGTGGCTTGGGCCGACTCAGGGAATTAGTTACTTAGTTTTCCTGAG--------------------- ---------TCTTCCATGTGTAAAAGAGATATATAT--GTTATTAAACTTGTGTTTCATTTTCTCCTGTTAATCTGTCTT TTATTACAAGGGCCAGTTAGGGGGAGTGTCTCAGCCA--AGAACAGAGAAGGGTAGAGGTAA-AATTA-TTTTTCCTCCC CTACA---GTTT---ATTTTTGAATCA----GGTGTAATATAAATGTTT----CAAAATAAGTCTGTCCT >Rousettus_aegyptiacus AAAATACCTAACCATTTTATCATTGGCGTTATAGAGTT-GGGTGATCTGTAA---CTTT---TGAAGGGAAGCAGAATGT GCCACCCCAAAATATGTCGCTTTGACATAAGGATTATTTTAGGCCG---------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------ATTATTTTCAAGAAATGGCAGGCATAGG AAAAGCTCTGAAAACTGAATAGAAATTACCCTTTTGTAAGAGACACTTACCTTTA--TAAGGGAAATCTTTATTTGTAAA -GTATCTGCTTCTCT-----------------GTATCATAAAGAGAAGGATAA-------------------CTCTAATT CTCTAGAAACTC---------------------ACCTAAATCTGTATAGCATAGCGACCATACTCTTGTTTTCTGTGCTT TG--TGATAACCTCCTCTAACTG--T----------CTCCTCCACCC-------TACATCTTTAGTCTCTAGCTGGAGAC -AGTATCTAAGGTAATGGTTTGGGCCATCTCTGGG----AGTTACTCAGTTTTTCTGGGTCTCCCATATAAATTACCCAG TTTTCAGGGTCTTCCATCTATATAGGAAGTATATAT--GTTATTAAGTTTTTAT--GTTTTTCTCCTGTTATTCTGTCTT CTATTATG----------GGGGGTGGGGGTTCAGCCA--AGAACAGAGAAGTGTAGAGGGGA-AATTA-TTTTTCTTCCC CTACA---ATTC---ATTTTTGAATCAAATAAATGTAATGTGAATGTTT----CGAAATAAGTTATTTAT >Condylura_cristata GAAATGCCTGA-------------------------TTTGGGTGCCT----A---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------ATTT---ATTCTTGAATCAAATAAATGTAATAGGAATACTT----AAAAATAAATATATCCC >Sorex_araneus AAAGCATCTATTCATTTTG-CATCAGTGTTATATAGTTGGAGCAATATGGGA---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------TTTC---ATTTTTGAGTGACATAAATGCAAAATAAAAGTTT----CAAAATAA--------- >Galeopterus_variegatus GAAATACCTAACCATTTTGTCATTGGCATTATATAGTCTGCATGGTCTGTAG---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------TTTT---A------AATCAAATAAAGGTAATATAAATGTTC----C-AAATAAATATAGTCT Dog43_LINE >L1_CARN7_3END ------------------------------------------------------------------------TGGTAACT AGACTT-ATTGTGGTGATCACTTCACA----ATGTATACAAATGTCGAATCACTATGTTGTACACCTGAAACTAATATAA CATTGTATGTCAATTATACTCAAATAAAAAAA------------------------------------------------ ------------------------ >Canis_familiaris AATTATTACATATTTTAATGAAGATAAATGTGAGAACTGCAAAGCTTATT---AAAGCATTATAGTTCT----------- -GACTTAACTATGGTGATCATTTTGCT----GTGTATACAAATATTAAATCCCTCTGCTGTACACCTGAAAATAATATAA TGTTGTATGTCAGTTGTACCTCAATTAAAAT----AAAGTGTTACAGTTCT---TTCTTAATAAAG-------------- ---------------AAGCTTTTA >Felis_catus AATTATTACATACTTTAATGAAGATAAATGCGAGAACTACAAAGTGTATT---GAAGCATTGTAGTTCT----------- -GACTT-ATTATGGTGATCATTTTGCA----GTGTTCACAAATATTAAATCACGATATTGCACACCTGAAAATAATATAA TATTATACGTCACTTATACCTCAATTAAAAT----AAAGCATTACAGTTCT---TCCTCAATA-ATCCAAAATTGTTTAA TTATA-----AAGGGAAGCTTTTA >Manis_pentadactyla AATTATTACAAAGCTTAATGAAGATAAACCTGGGAACTACAAAGGGTATT---AAAGCATTATAGTTCT----------- -GACTT-ACTGTGGTGGCCATTTCACA----GTATATACAAACATCAAACCATTACATTATATA-CTGAAACTCACATAA TATTTTATGTCAATTATACCTGAATTTTTAA----AAAGCATTGTAATTCT---CCCTCAATAAATCCAAAATTGTTTAA TTATAAAAGAAA-TAAAGCTTTTC >Sus_scrofa AATTATTATAGGCTTTAGTGAAGATCCATCTGAGAACTGAAAAGTGTATT---AAAGCAATATAGTTCT----------- -GACTT-ATTGTGGTGATCATTTCACACACTATATGTACAAATACAGAATCATTATGTGATATACCTAAAACAAATATAA TGTTATGTGGCAATTATACCTCAATTTTAAA----AAAGCATTATAGTTCT---TCCTTCATAAATCCAAAGTTGTTTAA TTATAAAAGAAAGGGAAGCTTTTA >Bos_taurus AATTCCTACAGATCTTAAGGAAGATAAATCTGAGAACTGCAAAGTGTATT---AAAGCATTATAGTTCT----------- -GGC---ACTGTCATGATCATTTCTCA----GTGCATACAAATATAGAACCATTATGTGGTACACCTGAAAATAATACAA TGTTATATGGAAATTATACCTCAATTTTTAA----AAAGCTTTAGAGTTCT---TCCTTCATAAATCCAAAATCATTTAA TTATAAAAGCAAAGGAAGCTTTTA >Equus_caballus AATTATTACAGGCTTTAAAGGAGATAAATCTGAGAACTGCAAAGTGTATT---AAAGCATTATAGTTCT----------- -------------------------------------------------------------------------------- ------------------------------------------------------TCCTTCATAAATCCAACATTGTTTAA TTATAGAAGAAAGGGAATCTTTTA >Ceratotherium_simum AATTATTATAGACTCTAATGAAAATAAATCTGAGAAC-------TGTATT---AAAGCATTATAGTTCT----------- -------------------------------------------------------------------------------- ------------------------------------------------------TCCATAATAAATCCAAAATTGTTTAA TTACAAAAGAAA-GGAAGTTTTTA >Myotis_myotis AATTTTTATGGACTTTAATGAAGATAAATCTGAGAACTCTAAAGTGCATT---GATGCATTATAGTTCT----------- -------------------------------------------------------------------------------- ------------------------------------------------------TCCTTAATAAATCCAAAATTGTTTCA TTTTAAAAGAAAGGGAAGCTTTTA >Rousettus_aegyptiacus AGTTATTACAGATGTTAATAAAGATAAATCTGAGAACTGTAAAGTTTATT---AAAGTATTATAGTTCT----------- -------------------------------------------------------------------------------- ------------------------------------------------------TCCTTAATAAATCCAAAATTGTTTAA TTATA-AAGAAAGGGAAGCTTTTA >Condylura_cristata CATTATTGCAGACTTTAATGAAGATAAATCTGAAAGTTGTAAAGTATATC---AAAGCATTATAGCTCT----------- -------------------------------------------------------------------------------- ------------------------------------------------------TCCTTAACAAATCAGAAA----CTAA TTATAAAAGAAAGGGAAGCTTTAA >Sorex_araneus CTTTATTACCGGTTTTAATGAAGATAAATCTGAGACTCGCAAAATACATT---GAAGCATTATAGTTCT----------- -------------------------------------------------------------------------------- ------------------------------------------------------TTC----CAAATATGAAATTGTTTAA TTATAAAAGAAAGGGAAGCTTTTA >Homo_sapiens AATTATTACAGGCTTCAGTGAAGATAAATCAGAGAACTGCAAAGTGTATT---AAACCATTATGGTTCT----------- -------------------------------------------------------------------------------- ------------------------------------------------------TCCTTAACACGTCTGAAATTATTTAA TTATAAAAGAAAGGGAAGCTATAA Dog45_LTR >ERV54-EC_LTR --------------------------------------------------------------TGTTAAAAACAAGACAAC AGGCCCAAAATGGAGTCACTTATGCTAAGCCCCACGTCACCAAACCGAGACTTAACTTAATTACAGTTTCGGCTCTCCCA GAAATGGAATCTTAAACCAGTCAATCAGGAATCACCTGATCAGCACTAGTTAGGTAATCTGCCTGAT-AGACCCCTGCCA TCCCCTAAAGGAAAGTAACCTTGCAATAACCAATCCAC-----------TTTTTTGCCTAGTATAACTTCCTTGTTCCTG CTCCCTTCTG--------------CCTATAAAAGTCTTTCATTTTGTA-CAGCTCCTCGGAGCTCCTTTCTATCTGCTAG ATTGGATGCTGCCCAATTC--ATGAATCATTGAATAAAG---CCAATAAGATCTTTAAAATTTACTCAGTTGAATTTTGT TTTTTA-------ACA------------------------------------------------------------- >Canis_familiaris TTGCAAAGCGAAATTT-ATTTTCACTTTCTCACTTCTTT-GACTACAATGTT---GCAT---TGTTAAAAGAAAAATGAC AGGCCCAAAATTGAATTACTTATGCTAAGCTCCACATCACTAAATCAAA-----ACATAATTATAGCTTAGTCTCTCCCA GAAATGTAATCTTAAACCAGTTAGTCAGGAATAGCCAGATCAGCACTTGTTAAATAACTTACCTGGT-GGACCCCTGCTA TGCCCAAAAAG-GAGTAACTTTGCAATAACCGACCCAC-----------TTTTTTGTATAGTATAATTCCTTTGTTCCTG CTCCCTTCTG--------------CCTATAAAAGTATTTCATTTTGTA-CATCTTCTCAGGGTTCCTTTATTCCTGCTAG ACTGGATGCTACCCAGTTCAAATAAATTTTTGCTCAAAG---GTCTTAAAATTTTTAATATGT-CTCAG------CTTAT -TTTTA-------ACA---GCAT---ATACCTCTAGAGAAACTTAACTTATTTATTTTATTCCCACCTTC-ATAGAA >Felis_catus GTGCAAAGCCGAATTT-ATTTTCACTTTCTCA----TCT-GACTCCAATCTT---GCAT---TGTTAAAAACAAGACAAA ATGCCCAAAATGTAGTCACTTATGCTAGGCACCCTCTCACTAAACTGAG-----AGATAATTATAGCTTAGTCTCTACCA GAAGTTGAATCTTTAACCAGTCAATCAGGAATAGCCAGAACAGCACTACTTAGGTAATCTACCTAAT-AAATTCCTGATA TTGCCTAAAGG------------CAATCACCAACCCAC-----------ATTTTTGCCTAGTATAGCTTCCTTGTTCCTG CTTCCTTCTT--------------TTTACAAAAGTATTTC---TTGTA-CATCTGCTTAGAGCTCTTTTCTACTTGCTAA GCTAGATGCTGCCCAATTCAAATACATTTTTGCTCAAAG---CACGTAAAATTTTCAATATGT-CTTAA------TTTAC CTTTTA-------ACA---ATAT---ATACCTCTATAGCTCCTCAACATATTTATTTTATTCCCACCTTC-TTATAA >Manis_pentadactyla CTGCAAATCCAAATTT-ATTTTCACTTTCTCATTTCTCT-GACTACAATATT---GTGC---TGTTAAAAACAAGACAGA AGGCCCAAGATAGAGTCACTTAAGCTAATCTCCACATCACCAAACTGAGACTTAACTTAATTACAGTTTAGATTCCCCCA GAAACGAGATCTTAAACCAGTCAATCAGTAATAGCCAGATCAGCACTAGTTAGGTAATCTACCTGATAAGACTCCTTCCA TTCCCTAAAGGAGAGTAATTTTGCAATAACCGAACTAC-----------TTTTTTGCCTACTATAGCATCCTGGTTCCTG CTCCCTTCCT--------------CCT------GTCTTTCATTTTGTA-CAGGTCCTTGGAGCTCCTTTCCATCTGGTAG ATTGAATGCTGCCTGATTTGAACTGATTTTTGTTCAAATAAACTCTTAAAAACTTTAATATGC-CTCAG------TTCAT CTTATA-------ACA---GTAT---ATGCCTCTAGAGCACCTAAACACATTTATTTTTTTTACATCCTCTTTATGG >Sus_scrofa TGGAAAAATCAAATTT-ATTTTCACTTTCTCACTTCCCT-GAGTACAATGTT---GTGC---TG-AAGAAAGAAGACAAC AGGCCCCAAACAGAGCCACTTATGCTAAACCCCATGTCACAAAATCAAG-----ACTTAATTACAGTTTTGGCTCTCCCC AAAATGGAATCTTAAA-CAATGAATCAGGAATCATTTGATTAGCAAAAGTTAGGTATTCTTCTGAAT-AGGCCCTGGCCA TCCTTGAAAGAAAAGTATCTTTGCAATAACAAACCTTC-----------TTGTTTTCCTAGTAAAATTTCCTTGTTCCAG TTCCAATCTG--------------------------------TTTGTA-TGATTCTTCAGAGCTCCTTTCAATCTGCTAT ATTTGATGCTGCCCAATTCAAATCAATTGTTGC-CAAATAAACGCTTAAAATTTTTAATATGA-TTCAG------TTGAT CTTTTA-------ATA---ACAT---ATACCTCTAGAGCTCCTCAACATATTTATTTTATTTCCATTTTC-TTATAG >Bos_taurus CTGAAAAATCAAATTT-ATTTTCGCTTTCTCAGTTCTCT-GACTACAATGCT---ATGT---TG-TAAAAACAAGACAAT AGCCTTGAAA--------CACATGGTAATCTCCATGCCATGAAACCAAGGCTTAACTCCATTACAGTTTAGA-TCTCCCA GAAACAGAATCTTAAAATA-TGAATCAGGAATCATCTGACCAGCACTAGCTAGGTAATCTTCTGAAT-AGACTCTGACCA TTCCTGAAAGAAATGTAACTTTGCAATAACCAATCCACTTATTTATTTATTTTTTACCTAGTAAAATTTCCTTTATTCTG CT----TCTG--------------CTTGTAAAAGTATT--GTTTTGCA--AAATCCTCAGAGTTCCTTTCAATCTTCTAT ATTTGAACATGCCCAATTCAAATCAATTTTTGCTCAAATAAACTCTTACA--TTTTAATATGA-TTTAG------TTGAT CTTTTATTAAATAACA---ACAT---ATAATTCTAGAGCACCTCAGTATATATGTTTTATTTCCACCTTC-TTATAG >Equus_caballus CTGCAAAACCAAATTT-ATTTTCACTTTCTCACTTCTCT-GACTATGACGTT---GTAT---TGTTAAAGACAAGAAAAC AAGCCCAAAATAGTGTCTCCTATACTAAGCCTCATGTCACCAAACTGAG-----ACTTAATCACAGGTTCAGCTCTCCCA GAAATGCAATCTTA----AGTCAATCAGGAATGGCCTGATCAGCACTAGCTAGGTAATCTGCCTGAT-AGACTCCTGCCA TCGCCTAAAGGAAAGTAACTTTACAATAACCAACCCAC-----------TGTTTTGCCTAGTGTAACTTCCTTATTTCTT CTCCGTTCTG--------------CCTATAAAAGTCTCTCATTTTGTA-CAGCTCCTTTGAGCTCCTTTCTTTCTACTAG GTTGGATGCTTCCTGATTCTAATCGATTTTTGCTCAAAG----TCTTAAAACTTGTAACATGC-CTCAG------TTTGT CCTTTG-------ACA---GGGT---ATACCTCTAGAG---CTTAACATACTTATTTTATTTTCATCTTC-TTATAG >Ceratotherium_simum CTGCAAAGCCAAATTT-ATTTTCACTTTCTCACTTCTCT-GACTACAACATT---GCAT---TGTTAAAAACAAGACAAC AGGCCCAAAACGGAGT--CTCACGCTAAGTCCCAAGTCACCAAACTAAG-----ACTTAATCACAGTTTTGGATCTCTCA GAAATGGAATCTTAAATCAGTCAGTCAGGAATTGTCTGATCAGCACTAGTTAGGTAATCTGCCTGAT-AGACTCCTGCCA CTCCCTAAAGGAAAGTAACTTTGCAATAACAAACCCAC-----------TTTTGTGCCTAGTATGACTTCATTATTAGTC CTCCATTCTG--------------CCTATAAAAGTCTTTCATTTTGTA-TAGCTCCTCAGAGCTCCTTTCTTTCTGGTAG GTTGGATGCTTCCCGATTCCAATCAATTTTTGCTCAAATAAACTCTTAAAATTTTTAATATGC-CTCAG-------TTGT CTTTTG-------ACA---GCAT---GTACCTCCAGAG---CTAAATATATTTATTTTATTTTCATCTTC-TTATAG >Myotis_myotis CTGCAAAACCAAATTT-ATTTTCACTCTATCACTTCTCT-GACTACAACGTT---GCAT---TGCTAATAACAAAATAAT GGACATGA-ATGGAGTCACTTATGCTAAGCCTAAAGTCACCAAACTAGG-----GTTTAATTATGGTTTCAGCTCTCCCA CCAATGGAATCTTAAGGCAGTCAATCAGGAATCACCTGATCTGCCCTAGTTAGGTTATCTGCCTAAT-AGATCCTTGATA TTCTTTAAAGGAAAGTAACTTTGCAGTAACCAATCCA------------TTTTTTGCCAAGTATAACTTCCCCATTTCTG TTTCCTTCTGTCTATAAAAGCTTTTCTATAAAAGCTTTTCATTTTGTACCAATTCCTCAGATCTTCTTTTTATCTGATAT ATTGGCTGCTGACTTTCTTGAATAGATTTAGGCTCAAACAAACTC--AAAATATTTAACGTGC-TTCAGT--GTTGTTGT TTTTTA-------ACA---GCAG---AAACTTCTGGAATTCCTCAACATATTTATTTTATTTCCATCTGC-TTATAG >Rousettus_aegyptiacus CTGCAAAACCAAATTT-ACTTTCACTTTCTCACATCTCT-TACTACAATGTT---GCAT---TGTTAAAAACAAAATAAC AGGCATAAAATGGGGTCACTTATGCTAAGCCCCACATCACCAAACTGAC-----ACCTAATTACAGTTT-GGCTCTCTCA GAAATGGAATCTGAAACCAGTCAAACAGGTCTGAGTCAAACAGCACTAGTTAGATAATCTGCTTGAC-AGACCCATGCCA TCCCCT-AAGGAAAGTAATTTTGCAATAACCAATCC-------------TCTTTTGCCAAGTATAACTTTCCTGTTCCTG CTCCCTCACG--------------TTTATAAAAGTCTTTAATTTAGTA-CAGTTCCACAGATTTCTTTGCTATGTGATAG ATCAGCTGCTATTCAATTTGAATTGACTTTTGCTCAAATAAACTC--AAGATATTTAACATGT-CTCAG------TTTAC TTTTTA-------ACA---GCAT---ATATCTCTAGAGTTTCTCAACATA-----TTTATTTCCGTCTTC-TTATAG >Condylura_cristata TTGGAAAACCAAGTTTCATTTATACCTTTTCAATTCTTT-TACTGCAATA-T---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------GTAT---ATAACTCTAGAACTTCTCAAAGAA-----TCTCTTTCCATCCTC-TTAAAG >Uropsilus_gracilis CTGGAAGTTCAAATTTTATT--GATTTATTCACTTTTTTTTACTACAATG-T---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------GTGT---ATTTTTCTAGAACTCCTCAAATGA-----TCTATTTCCATCTTC--TATAG >Homo_sapiens CTGCAAAACCAAATTT-ATTTTCACTTTCTCACCTTTCT-GACTGAAATGTT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------GCAT---ATAGCGCTAGAGCTTCTTAACATACTTATTTTATTTCCATCTTC-CTACAA Dog46_LINE >L1_CARN7_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------ATAAATAAG------------------------------- -TCATGGGGATGTAATGTACAGCATGGNGAATATAGTCAATA-----ATATTGTANTAACNTTGTATGGTGACAGATGGT AACTAGACTTATTGTGGTGATCACTTCACAATGTATACAAATGTCGAATCACTATGTTGTACACCTGAAACTAATATAAC ATTGTATGTCAATTATACTCAAATAAAAAAA------------------------------------------------- ---------------------------------- >Canis_familiaris CCTTGACATCCTTAAGA-TCTTAGCTTTCTACAG-TGCTATTTTCCTTATTA---TT--AACAAATG-GCTT---GGGAT GCATGAGTGGCTCAGCAGTTGAGCTTCTGCCTTCCACCCAGGGCATGATCCTGGAGTCCCAGGATCGAGTCCCACATCGG GCTCCTGGCAAGGAGCCTGCTTCTCTCTCTGCCTAGGTCTCTGCCTCTCTCTCTCTCTTTCTGTGTCTGTCTCTCATGAA TAAATAAATAAAATCTTAAAAAAAACACACCCCAAATGGCTTTAAAAATAGCTTCATATTAAACA-TGGCTTGTGCCATT TTTAAGATGATTGAA-GTAGGTCTTAGAAGTTTTCATCACTAGAAAGAAGTTTC-GTAATGATACAAGGTGATGGGTGTT AACTAGACTTACT---GTGATCACTTCACAATATACACCAACATCGAATCATTATGTTGAACACCTGAAACTAATAT--- -------GTCAATTATATCTAAATTT--------TT------TTTAAATGGCTT---ATTACAATTTCAAGGGGCTCCCT CAGGCCAGAGATGGGACCATCTGAGCACTAGTAA >Felis_catus CCTTGACATCCTCAAGA-TTCTAGATTTCCCCAGATGCCCTTTCCCTTATTA---TT--AACAAATG-GTTT-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------TAAAAATTGCTTCTTATTAAAAAGTGGCTTGTGACA-- -TTAAGATTATTTAA-GTAGATCTTAAAAGTTTTCATCACTAGAAAAAAAATT--GTAAAGATGCTAGGTGATTGATGTT AACTAGACTTACT---GTGATCACTTCACAATATATACCAACATCGAATCATTTTGTTGGACACCTGAAACTAATATAA- ----TATATGAAGTATATCTAAAGTT--------TT------TAAAAATGGCTT---G-TGCGATTTCAAGAGCTTCCGT CAGGCCAGAGATGGGACAACTTGAGTGCTAATAA >Manis_pentadactyla NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAATTGCCCTTTAAATGCATA---TT--AAAAAATG-GCAT-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------AATAAATGGCTCCATATTT------------------- -TTAAGATCATTTAA-GTAAACCTTAAAAGTTTTCATCATTAGAAAAAAAATTGTGCAATAATGTAGGGTGACGGATGTT A-----ACTTACTGTAGTGATCATTTCACAATATACACAAATATTGAATC---ATGTTGCATACCTGAAATTAATATAAT GTTAC---------ATATCTAAA-----------TT------------TGGCTT---G-TGCAATTTGAAGAGGCTCCCT TGGGCTAGCAGTGGGACAATTTATGCACTAATAA >Sus_scrofa CCTTGATAGCCTTGAGA-TTTTAGCTTTCCACAGCTACCCTTTGTCTTCGCA---TTTTAAAAAATG-GCT--------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------TATTGGCATCGTATTAAAAA-TGGCTTGTGCCATG -TTAAGAGCATTTAA-GTAGATCTTAAAAGTTTACATCACTA---AAAAATTT--GTAGCAATGAAAGGTGATGGATGTT AACTAGACTGATTGTGGTGATCATTTCACAGTATATACAAACACGGAGTCTTTATGTCGTCCACCTGAAACGAACATAAA GTTATATGTTGATTATATCTAAATTT--------TT------AAAAAATGGCTT---G-TGCCATTTCAAGAGGCTCCCT TGGGCCAGAGATGGGACCATCTGAGCACTAATAA >Tursiops_truncatus CCTTGATATCCTTGAGA-TTCTAGCTTTCTACAGCTACCCTTTTTCTTCATA---TT--AAAAAGCAAGGGT-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------TAAAAATGGCTTCATACTAAAAA-TGCCTTGTGACGTT TTAAAAATCATTTAA-GTAGATCTTAAAATTTTTCATCACTAGAAAAAAATTT--GTAACAATGTATGGGGACAGATGTT AACTAGACTTA-TGCTGTGACCATTCTGCAATGCATACAAATACCGAGTCGTTACATTGTAAACCTGAAAATAATATAAT GTTACATGTAAATTATATCTAAATTT--------TT-------AAGAATGGCTT---G-TGCAATTTTAAGAGGTTCACT TGGACCAGAGATGGGACAATCTGAGCACTAATAA >Equus_caballus TCTTGATATCCTCAAGACTTCTAGCATTCTACAGTTACCCTTTCTCTTCATA---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------TT------AAAACATGGCTT---G-TGCAACTTTAAGAGGCTCTCC TGGGCCAGAGATGGGACAACATGAGCACTAACAA >Ceratotherium_simum TCTTGATATCCACAAGACTTCTAGCTTCCTGCAGTTAGT---TTTCTTCAAA---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------TT-------AAAAATGGCTT---G-TGCAACTTGAAGAGGCTCTCC TGGGCCAGAGATGGGAAAATCTGAGCACTAATAA >Myotis_myotis CCTTGATATCCCTCAGT-TTCTAGCTTTATACAGTTACACTTTCTCTTCATA---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------TTTTT--AAAAAAATGGCTT---G-TGCAATTTCAAGAGGCCCCAT GGGCCCAGAGATGAGCTAATCTGAG-----ATAA >Rousettus_aegyptiacus CTTTGATATCCTTGAGT-TTCTAGGTTT--ATAGTTACCTTTTTTCTTCATA---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------TG------AAAAAATGGATT---G-TGTAATTTCAAAAGGTTTCCT TGGGCTAGAAATGGGACAATCTGAGCACTAATGA >Condylura_cristata --------------AGACTTCTAGTTTTCTCTTGCCTCTC--TTTTTTCATA---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------TT------AGAAAATGGCTT---G-AGGAATTTCAAGAGGCTTTCT TAGGTTAGTGATGGGACAATTTGAGTGCTAACAA >Solenodon_paradoxus CCTTGATAACCTCAAGACTTTTAGAGTCCTACAGTTACCCTTGTTCTTCATA---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------TT-----AAAAAAGTGTTTT---A-TGTGATTTGATAAGGCTCTCT TGAGTACTAGATGGAACAGT--------GAATAA >Homo_sapiens CCTCAATATCCTTGAGACTTCTGGGCTTTTACAGTTACCCTTTTTCTATGTA---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------TTATTAATAAAAGATGGCTT---G-TGAAACTTGAAGAGGCTCCTT TAGGCCATAGATAGGACAATCTGAGCACTATTAA Dog46_LTR >MER34C_CF -------------------------------------------------------------------------------- -------------TGAAGGGGAGCAGAATTTGCCACCCCAAAATAT-GCCTCTTTGGCA-TAAGGATTATTTTAGGCTGA TTATTTTTAAGAAACTGCAGACACAGGAGAAGCTCTGAAAACCGAGTAGAAGTTACCCTTTTGTAA-GAGACATTT---- -------------------------------------ACATTTATAAGG---GAAATCTCCATTTGTAAGGGTGTCTCCC TCTCTGTACCAGGAAGAGGAGGATGACTCTAAATCTCTAGAAACTCTTATCAA-TGGAGAAGGCAAGGACTTAAATCTGC ATAACA----ACCTTACCCTTGTTTAC---------TGTGCTTTTCCTGGTAACCTCCCATAA------CT-GACTCCCC A--CCCCCAACATCTT-TTTTGTCTTTAGCTGGAGATGGTATTTAAGGTGATGGCTTGGGCCATTTCGGGGAGTTACTCA GTTTTCCTGGGTCTCTCCCATGTATACAGGAGGTATACATATGTTATTAAACTTTTGTTTGTTTT------TCTCCTGTT AATCTGTCTTATGTCAATTTGATTCT-------TAGA--------------CCAGCCAGAAGAACCTAGAAGGGTAGAGG AAAATTT---TTTTCTCCTCAACA-------------------------------------------------------- ------------ >Canis_familiaris TAATTT---GCAAAATGTGTTTCACTGCCCACT------ATCCCTCCTCCACTC----------TCCCAAAAGT-----T TTA---AAGC---TGAAGGAGAGCAGAATTTGCCACCCCACAATAT-TATTCTTCGACA-TAAGGATCATCTTG------ --------AAGAAACAGCAGACATAG----------AACAACTATGCAGAAGTTCCCCTTTTGTAAGGGGACATTT---- -------------------------------------ATGTCTCTCAGG---GAACTCGCCATCCCTAAGGGTGTCTCCC TCTCTGTACCAGGAA---AAAGAGGTGTCTAGATCTCTAGAAACTCTTAGCAA-TGGAGAAGGAGAGGACTTAAATCTGC CTACCA----ACCATACTCCAGCTCAC---------AGTGCTTTGCCTGACAGCCACCCATGA------CT-GGCTCCCC ACGCTCCCAACATC---TTTTGTCTTTAGCCAGAGAGGGTATTTAAGGAGGTGGCTTGGGCCATTCCAGG-AGTTACTCA GCTTTCCTGGGTCTCTCCTGTGTATGTGGGGGGCAT----ATGTTAGTAAAC--TTGTTTGTTTT---TCTCCTTCTTGT TATTTATTT------ATTTTTATTACAGCAGG-GGTGGGTGGGG----GCCTCGGCT--AAGAACCTAGAAGGTTAGAGG AAAAATTATTTTTCAACCCTTACA---AAGC---CAACTGCCTTTTTTTTTT-------CAGAGAAGAAATAGGAGGCCA GAGAGGTGAAGC >Felis_catus TAATTT---GTAAAATGTGTTTCACTGCCCGCT------ATCTGTCCTCCACTC-----------CCCAAAGGG-----T TTA---AAGC---TGAAGGAGAGTTGAATTTGCCACCCCACAGTACGGGTTCTTTGGCA-TAAGGATCATCTTG------ --------AAGAAACAGCAGACACAG----------AAAACCTGCATGGAAGTTACCCTTTTGTAA-GGGACATTT---- -------------------------------------ACATTTATAAGG----AAGTCTCCATCCGTAAGGGTGGCTCCC TCTCTGTACCAGAAA------GATGTGCCTACATTTCTAGAAACTCTTACCAATTGGAGGAGGCGGGGACTTCGATCTGT GTACCA----ACCATGCTCTCGCTCAC---------TGTGCTTTGCCTGACAGCCTCCCATAC------TTGGGCTCCCT AT-CTCCCAACATC---TTTTGTCTTCAGCTGGAGATGGTATTTACAGTGGTGGCCGGGGCCATTCCAGG-AGTTCCTCA GTTCTCCTGGGTCTCTCTTGTGTATGCAGGGAGCATAC--ATGTTATTAAAC--TTCTTTGTTTTTTCCCTCCTCCTGTT CATCTGGCT--------TTTTATTATAGCTGCAGGGGGGTGGTT----GCCTCAGCC--AAGAGCTTAGAAGGTTAGAGG AAAAATTATTTTTCAACCTATACA---AAGC---CAACTCCCTTATTTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNN >Manis_pentadactyla TAATTT---GCA-AATGTG---CACTGCCCACT------ACCCCTCCCTCCCTCCCTCCCTCCTCCCCAAAGGG-----T TGC---AAGC---TGAAGGGGAGCAGAAGGGGCCACCCCAAAGTAT-GCCTCTTTGGCA-TAAGAACTGTTTCAGGCTGA TTATTTTTAAGAAACAGCAGACATGGGAGAAACTCAGAAAACCTAGTACAAGTTA-CCTTTTGTAA-GAGACATT----- ---------------------------------------AACTCCAAGG---GAAATCACCATTTGTAAGGGTGCCTTCC TGGCTGTACCAGGAAGAGAAGGA-----CTGAATCTCTAGGAACTCTAATCAG-CAGAGAAGGTAATGACCTACATCTGA ACAACAACCTACCTTACCCTTGTTTGC---------TATGTTTTTCATGACAACCTCCCGTAA------CT-GGCTCCCA A--TCCCAAACAACTTCTTTTGTCTTTAGCTGGACACTGTATTTAAGGTGATGGCTTGGGCTATTTCCGGGAGCTCCTCA GTTTTCCTGGGTCTCTTCCATGTATACAGGAGGTATAC--ATGTTATTAAAT--TGGTTTGTTTT---------CCTGTT AATCTCTCT--------TTTTATAAT--GTGGGGGGAGGAGGGA----GGCTCAGTC--AAGAGCCTAGAACGGTGGAGA GAAGATTATTTTTCCTCCCCTACA---AAGC---CAATTTCCTTAATTTTT--------CAGAGAAAAAACTGGAGCCCA GAGAGGTGAAGC >Sus_scrofa TAACTTGAGGAGGAAGGCAGATTCCTGCCAG--------ACCTCTCCCAT------------------------------ -----------------------------------CCCC-AAATAT-GCCTCTTTAGCA-CAAGTATTATCTCAAGCTGA TTATTTTTAAGAAACAGCAGATGTAGGAAAAGATCTGAAAATAGAGTAGGAGTTACCCTTTTGCAA-GAGACCCTTTAGC AAGTTAAAAATTACAAGTTAAAAGTTACCCTTTTGCAAGATTTATAAGGAAAAAAATCTCTATTTGTTAGGGTGTCTTCC TCTCACTA-CAGGAAGAGAAGGATAA--CTAAATCTTTAGAAA--CTAATCAA-AGGAGAAGAGAA--------ATCTGC AGAACA----ACTATATTCTC-TTTAC---------TGTGCTTTTCCTGATAACCTCCCTTAA------CT-GACTGC-- -----CCTCAAATT---TTTTGTCTTTAGCT-GAGATGGTATTTGAGGGGGTGATTTGGGTCATTTCAGGTAGTTGATCA ATTTTCCTGAGTATCTCCCATGAATACAGAAGGTACAC--ATATTATTAAAC--TTGTTTGTTTT-----CACTCCTGTT TATATCT----------TTTTATTAC-----------AGAGGGG----GTCTCAGCC--AAGAATGTAGAAAGGTAGAGG GAAACCTATTTTTCCTCCCCTACA---AAGC---CAATTCCTTTTTTTTTTTTTTTTGCCAGAGGAGAAGCTGTAAC--A GAGATTTGAAGC >Tursiops_truncatus TCATTT---GCAAAATGTGTTTCACTTCCCATG------ACCTCTCCCCCAC----------------AAAGGG-----T TGC---AAGC---TGAAGGGGAGCAGAATTTGCCACCCCAAAATAT-GCCTCTTTGGCT-TAAGGATTATCTTGAGCTGA TTATTTTTACAAAACAGCAGACATAGGAAAAGATCTGAAAAGTGAATAGGAGTTACCCTTTAGCAA-GAGAGCCTTTAGC AAGTTAAAAATTACAAGTTAAAAGTTACCC-TTTGCAAGATTTATAAGG---GAAACCTCCATTTGTAAGGGTGTCTCCC CCTCTCTACCAGGAAGAGAAGGATAACTCTAAATCTTTGGAAACTCTGATCAA-AGGAGAAGGAAATGACTTAAATCTGC ATAACA----CCCATACTCC-ACTTAC---------TGTGCTTTTCCTGATACCCTCCCTTAA------CT-GACTCC-- -----CCTCGCATC---TTTTGTTTTCAGAT-GAGATGGTATCTAAGGTGATGGCTTGGGTCATTTCAGGGAGGTGCTCA GTTTTCCTGGGTCTCTCCCATGAAAACAGGAGGTGCAC--ATGTTATTTAAC--TTGCTTGTTTT------TCTCCTATT TATCTTTCT--------TTTTATTAC------------AAGGCG----GTCTGAGCC--AAGAACCT-GAAGAGTAAAGG TAAAATTATTTTTCCTTCCCTTCA---AAGC---CAACTCCCTTTTTTTT---------CAGAGGAGAAACTGGAGCCCA GACAGGTGAAGC >Equus_caballus TAATCT---GCAAAAAGTCTTTCACAGCCCAGT------ACCCCTCCCCTGCCC-----------CTAAAAGGG-----T TGC---AAGC---TGAAGGAGAGCAGAATTTGTAACTCCAAAATAT-GCCTCTTTGGCA-CAAGGATTGTCTCGAGCTGA TTATTTTTAAGAAACAGCTGACATAGGAAATGCTCTGAAAAGGGAGTAAAAGCTACCCTTTTGTAA--GGACATTT---- -------------------------------------ACATTTGTAAGA---GAAATCTCCATTTGTAGGGTTGTTTTTC TCTCTGTACCAGGAAAAGAAGGATGACTGTACATCCCTAGAAACTCTTATCAT-TGCAGAAGGCCAGGACCCAAAGCTGC GTAACA----ACCTTACCCTTGTTTAC---------TATACTTTTCCTGGTCACCTCCCATAA------CT-GACTCCTC A--TCCCTAACCTC---TTTTGCCTGTAGCTGGAGATGGTATTTAAGGTAGTGGCTTGGGCCATTTCAGGGAGTTACT-- -----CCTG-GTATCTCCTATGTATACAGGAGGTATAC--ATTTTACTAAAC------TTGTTTT------TCTCTTGTT AACCTGTC---------TTTTTTTAC------AGGGGGAGGGTC----CCCTTAGCC--AAGATCCTAGGAGGGTAGAGG GAGAATTATTTTTCCTCTCTTATA---AAAG---CAACTCTCTTATTTTT---------CAGATGAGAAAATGGAGCCCA GAGAGGTGAAGC >Ceratotherium_simum TAATCT---ATAAAAAGTGTTTCACTGCCCAGT------ACCCCTCCCCTGCCC-----------CTAAAGAGG-----T TGC---AAGC---TGAAGGGGAGGAGAATTTGTTACTCCAAAATAT-GCCTCTTTGGCATTAATGATTGTCTTGACCTGA TTATTCTTAAGAAACAGCTGACATAGGAAATGCTCTGAAAACTGAGTTGAAGTGACCCTTTGGTAA--GAATATTT---- -------------------------------------ATATTTATAAAG---TAAATCTCCATTTGTAGGGGTGTCTCCC TCTCTGTACCAGGAA---GAGGATGACTCTAAATTTCTAGAAACTCTTATCAT-TGCAGAAGGCAAGGACTTAAATCTGC AAAAGA----ACCTTACCCTTGTTTAC---------TGTGCTTTTCCTAGTCACCTCCCATAA------CT-TACTCCTC A--CCCACGACATCTTCTTTTGCCTTCGGCTGGAGATGGTGTTTAAGGTGGTGACTTGGGCCATTTCAGGGAGTTGCTCA GTTTTCCTG-GTCTCTCCCATGTATACGGGAGGTATAC--ACGTTATTAAAC--TTGTTTGTTTT------TCTCCTGTT AATCTATCT--------TTTTATTAC-------GGGGGAGGGTC----CCCTCAGCC--AAGAACCTAGAAGGGTAGAGG GAGAATTATCTTTCCTCTCTTACA---AAGC---CAACTCCCTTATTTTT---------CAGATGAGAAACTGGAGCCCA GAGAGGTGAAGC >Myotis_myotis TAAGTT---GCAAAAAGTGTTTCATTG-------------TCCCTCTACCACAT-----------TCAAAAGGC-----T TGC---ATGT---TGAAGGGGAGCAGAATTTGTCACCCCCAAATTT-GCCTCTGTGGTG-TAAGGATTATTGGGAGCTGA A-------AAGAGACAGGTTACATAGGAGAAGCTCAGAAAACT---CAGAAGTTACCCTTTTGTAG-GAGACATTT---- -------------------------------------ATGTTAACAAGG---GAAATCTCCATTTATAAG--TGTCTCTC TCGCTGTATCAGGAAGTGAAAGATGATTCTAAATTTATAAAAACTCTTATAGA-TGGAGAGGTAAATGACTTA-ATCTAA ATAACA----ACATTACCC--ATTTAC---------AGTGCTTTGCCCCATAATTGTCCATAAAAAATTAT-GGCTGCCG ---CTTCCAACATTTTCCTTTGTCTTTAGCTGGAGATGGTATTTAAGATGGTGG------------TGGAGAGTTACTCA GTTAGCCTGCGTATCGCCCATGTATACAAGAGATATGC--ATGTTATTAAACTTCTGTTTTCTTT------CCCAGTGC- -----------------TTTTATTTCAGGCGTGAGGAGGAAGGTAGGTGTCTCAGCC--AGGAACCCAGATGGGTAAAGG AAAAACAATTTTTCCTCTCCTACA---GAGC---CAAGTCCCTTATTTTT---------CAGATTAGAAACTGGAGCC-- AAGAAGTGAAGC >Rhinolophus_ferrumequinum TAATTT----TAAAATGTATTTCACTGCCTACT------ACCCCTCCTCCACAC-----------CCAAAAGGG-----T TGC---AAGC---TAAAGGGGAGCAGAATATGCCACCCCAAAATAT----------------------GCCTTGAGCTGA TTATTTTTAAGAAAGAGCATACACCAGACAAAATCTGAAAACTGAGTTGTAA----------GTAA-GAGATACTT---- -------------------------------------------ACAATG---GAAATCTTGATTTGTATG--TGTCTCCC TGCCAGGACCAGGAAAAGAAGGATGA--------TTCTAGGAATTCTTATCTA----AGAAGGCAATGACCTAAATTTGC ATAACA----GCCTTACCCTTATTTACTGTATGTGTTGTGCTTTGCCTAATAACCTCCCGTAA------CT--------- A--CCCTCAATATCTTCCTTTGTTTTCAGCTTCAGTTGGTATTTAAGATGTTGG------------CAGGGAGTTATTCA GTTTTCCTGAGTATTTCTTGTGTGTACAGGAGGTGTAC-----ATATTAAACTTTTGTTTCTGTT----TTTCTGCTGTC AATCT------------TTTTATTACCAGTGTGGGGGTGGGGTGAGGTGGCTCATCC--AGCAACCTATATGGGTAGAAG GAAAATTATATTTCCTTCCCTGCA---AAGC---CAACTCCTTTATTTTT---------CAGATGAGAAACTGGAGCCAA GAGAGGTGAAGC >Condylura_cristata TACTTT---GCATCAATTGTTTCCTTGCCAGTACCTGCCACCCCTCCCCCCTCC-----CCAGCCCCCAA---GTTACAC TGA----------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------AAGC---CAACTCCTGTATTTAC---------CACA-GAGAAATTGCAGCCTG GAGAGGTGAAGC >Scalopus_aquaticus TAGTTT---GCATAAATTGTTTCATTGTTAGT-------ACCCCTTGCCCCTCC------------CCAAAGGGTTACAT TAG----------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------AAGC---CAACTCCTGTATTTAC---------CAGATGAGAAACTGCTGCCCA GAGAGGTGAAGC >Homo_sapiens TAATTT---GTAAAAACGTTTTCACTGCCTGCTAGCCCCGCCTCTTCTCTGCCC----------CTAGAAACGG-----T TGA----------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------AAGC---CAACTCCCTTATTTTT---------CAGATGAGAAACTGGAGCCTA GAGAGGTGAGGC Dog47_LTR >MER34C_CF ----------------------------------------------------------------------TGTTGA---G GAGAAAAAAATTTTCCTCTACCCTTCTAGGTTCTTCTGGCTGGTCTAAGAATCAAAT--TGACATAAGACAGATTAACAG GAGAAAAACAAACAAAAGTTTAATAACATATGTATACCTCC-TGTATACATGGGAGAGACCCAGGAAAACTGAGT-AACT CCCCGAAATGGCCCAAGCCATCACCTTAAATACCATCTCCAGCTAAAGA--CAAAAAAGATGT---TGGG---------G GTGGGG--------AGTCAGTTATGGGAGGTTACCAGGA-AAAGCACAG---TAAACAAGGGTAAGGTTGTTATGCAGAT TTAAGTCCTTGCCTTCTCCATTGATAAGAGTTTCTAGAGAT--------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------TTAGAGTCATCCT-----------CCTCTTCCTGGTACAGAGAGGGAGACA CCCTTACAAATGG--AGATTTCCCTTATAAATGTAAATGTCTCTTAC-AAAAGGGTAACTTCTACT--CGGTTTTCAGAG CTTCTCCTGTGTCTGCAG-TTTCTTAAAA--ATAATCAGCCTAAAATAATCCTTATGCCA-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------AAGAGGCATATTTTGGGGTG-----GCAAATTC TGCTCCCCT------TCA-------------------------------------------------------------- -------------- >Canis_familiaris CAACGAAACAGCAAGACATCACAATTTTCTACGACCTG--TTTTTC--ATATGTTCCAAA---TAAT---TGTGGGGGAA GAGAGACAAGTTTCCCTCTACCTCTCCAGACTCTT-------GGCTGAGACACCCCTTGGAATAAAAGACAGATTAACAG GACAAAAGCAGACAGAAGTTTAATAAC--ATGCATACCTCC-AGTATCCATGCGAGAGATGCAGGAAAACTGAGTAAACT CCGTGAAATGACCCAACCGACCGTCTTAGATACCATCTTCGG-TAAAGAAAAAAGAAAGATTT---TGGAGTGGGAGGGG GGGAAA--------GGCCAGTCTGGGGAGGTGAGCAGGC-AAAGCACAA---TAAACAAGGGTACAACTGCTAAGCACA- CTAAGTTGCTGCCTTCTTCTTTGAGAAGGGTTTCCAGAGAT--------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------TTACAATCATCCT-----------CCTCTTCCTGGTACTGAGAGGGAGACA CCCTTAGAAATGG--AGATTTCCTTTTTAAATGTAAATGACCCCTAC-AAAGGGGTGACTTCTACT--TGGTTTTCAGAG CTTTTCCAATGTCTGCTA-TTTGAAAAAAA-ATAATCACCCTAAAATAACTTTTATGCCA-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------AAGAGACACATTTTGGGGTG-----GCAAATTC TACTCCCT-------CCG---TTAT---A--AACCATGGGATAAAATTAATGCGAGAAAAA--AAA-------------- ---ATC--AACTTG >Felis_catus NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNN---NNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNCCCCCACCTTAAATACCATCTTCAG--AAAGACAAATGGAAGATTT---TGGAGCGGGGGGCG GGGGGGGGGGCGGAAGCCAGTTTGGGGAGGTGACCAGGC-AAAGCACAC---TAAGTCAGGCTACAACTGTTCGGCAGAT TTAAACCGCCGCCTTCTCCACTGATCCGAGTTTCC--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------CCAGAGTCACCCT-----------CCTGTTCCGGGTGCGGAGAGGGAGACA CCCTCACCGATGG--AGATTTCCTTTTTAAATGTCAATGTCCCCTAC-AGAAAGGCAACTTCTCCT--TGGTTTTCAGAG CTTTCCCCAGGTCTGCTG-TGTTTAAAAA--CTAATCAGCCTAAAGTAAGCCTGCTGCCA-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------AAGAGACATATTTCGGGGGGGGGGAGCAAATTC TGCGCCCCT------TCT---TAAT---A--AAACATGGGAGAAAATTAATGCAAGGACAA--GTAACTGTTTTTCC--- ---ATC--AAGTTG >Manis_pentadactyla CAACAAAACAG-----CAT--TAATTTTCTAAAGCATG--TTTTTTTCATATATCACAAG---TAGT---TGTGGG-GGA AAAACATAATTTTCCCTCTGTCCATATAGGTTCTT-------CACTGAGACCCATCCTGTAATAAAAGACAGATTAACAA GA-AAAAACAGACAGAAGTTTAGTAAC--ATGATTATCTCC-TATACACATGGGAGAGACCCAGGATAATAGAAT-TACT CCTTGAAATGGTCCAAGCCCTCACTTTTAATACCATCTCCAGTTAAAGA-CAAAAGATGTTACAGGTGGA---------G GGGGAA--------CACCAGTTATGCGTGGTGACCAGGA-AAAGCACAG---TAAA---------GGCTGTAATGCAGAT TTAAGTCCTTGTCTTCTCCATTGTTAAGAGTTTCTAGAGAC--------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------TGAGTCATCCC-----------CTTCTTCCTGGTAT--AGAGGGAGACA CCCTTACAAGTGG--GGATTTCCCTTATACAGTCAAATGCCCCTTAC--AAAGCATAACTT---TT--TGGTTTATAGAG CTTTTCCTATGTCTGCTA-TTTCTTAAAAA-ATAATTGGTCTAAAATAATTCTTATGAGA-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------AAAAG-CTTATTTGGGGGTG-----GCAAATTC TGCTCCCCT------TCA---TAAC---C--AAACATGGGAGAAAATTAATTCAGGAAAAT--AAAATTGTTTTTAC--- ---ATC--AAGTTG >Sus_scrofa CAAGAAAACAGCCAGACAT--CAATTTTCTAAGACCTC--TTTTGG--AAATGTTTGGAA---TAAT---TGTGGGAGAA GAAAAACAATTTTCCTTCTACCCTGCTAGCTTTTT-------GGCTGACACCCACTG-----------------TAACAG GAGGAAAACAG-GAGAAGTTTAATAGC--ATGGATCCCTCCTTGTATACCTGGGAAGGACCCAGGAAAAAT------ACT CCCTCAAACAGCCCAAGCCACCACCTTAAGTACCATCTCCAGCTAAAGACCAAAGAAAGATGT---TGAG---------G GCAAGG-----------GAGTTGTGGGAGGCTTTCGGGCAAAAGCACAG---TAAACAAGGATAAAGTTGTTATGCAGAT TTAAATCATTGTCTTCTCCACTGATAAGAGTTCCTAGACTT--------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------CTAGA----CCCT-----------CCTCTTCACAGCACAGACTGGGAGACA GTCTTACACATGG--AGTTTTCCCTATAAATGGTGAAGGTCCCTTAC-AAAAGCATTGCCTCTACTACTGATTTCCAGAG CTTTTCCCACGTCTACTG-TCTCTTAAAAACATAATCTGCTCAAAATAATCCTTATGCCA-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------AAGAGGCATATTTTAAGATG-----GGAAATTC TGCTCCCCTTCATAATCA---TAAT---C--ATATGTGGGAGAAAATTAATGCAGGAAAAA--ATAATTGTTTTTGT--- ---GGC--AAGTCG >Tursiops_truncatus CAGCAAAAGAACAAGACAT--CAATTTTCCAAGATGCG--TTTTTT--AACTGTTTCAAA---GAAT---GGTAGGAGAA GAAAAATAATTTTCCTTCTACCCTGCTAGATTCTT-------GGCCGAAACCCCCCG-----------------TAACAG GATGAAAACAA-CAGAAGTTTAATAGC--ATGGGTCCCTCT-TGCATACATGGGAGAGACCCAGGAAAACTGAGT-AACT CCCAGAAAT-GTCCAAGCCACCACCTTCAATACCGCTCCCAGCTAAAGACCAAAGAAAGATGC---TGGG---------G GGAGGG--------AGCCAGTGATGGGAGGTTTTCAGGC-AAAGCACAG---AGAACAAGG---------TTGTGCAGAT TTAGGTCACTGCCTGCTCCACTGATAAGACTTTCTAGAGAT--------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------TTAGAGTCACCCTCGTCTTCCAAATCTCCTCCTGGTACAGATAGGGAGACA CCTTTACAAACGG--AGATTTCCCTTGTGAATGTAAATGTCTCTTACAAAAAAGGTAACTTCTACT--CAGCTTTCAGAG CTTTTCCTGTGTCTGCTT-TTTCTTAAAAA-ATTATCTGCTCAAAATAATCCTTATGCC--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------AGAGGCATATTTTGAGGTG------GAAATTC CGCTTCCAT------TCA---TAAT---C--AAACATGGGAGAAAATGAATGCAGGAAAAA--ATAATTGTCTTTAT--- ---GTC--AAGTTG >Equus_caballus GAACAAAACAGCAAGACAT--TGATTTCCTAAGACTTG--ATTTTT--ATATGTTTCAAA---TAAT---TGTGGAGAAG GAAAAGTAATTTCCCCTCTACCCTT-TAGGTTCTT-------AGCTGAGACTTCCTT-GTAATAAAAGACAGATTAACAG GAAAAACACAA-CAGAAGTTTAATAAC--ATGTATGCCTCC-TGTATATATGGGAAAGACTCAGGAAAACTGAGT-AACT CCCTGAAATGGCCCAAGCCACCAGTTTAAATACCATCTCCTCGTAAACA-CAAAAGAAGATAT---TGGG--------TT GGAGGG--------CGTCAGTTATGGGAAGTGAACAGGA-AAAGCACAG---TAAACAATGGTAAGGTTGTTCCACAGAT TTAGGTCATTGCCTTCTTCATGGATAAGAGTTTCTAGAGAT--------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------GTAGCCATCCCT----------CCTATTCCTGGTACTGAGAGGGAGACA CCCTTACAAATGTGCAGATTTCCCTCATAATTGTAAATGTCTCCTAC-AAAAGGGTAACTTCTACT--CAGTTTTCAGAG CGTTTCCTATGTCTGCTG-TTTCTTAAAAA-ATAATCAGCCTAAAATAATCCTTATTCCA-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------AAGAGACATATTTTGGGGTG-----GCAAATTC TGC-CCCCT------TCA---TAAT---C--AAACAGGGTAGAAAATTAATGAGTGAAAAA--TTAATTGTTTTTAT--- ---ATC--AAGTTA >Ceratotherium_simum CAATAAAACAGCAAGACAT--TAATTTTTTAAGATCTG--TTTTTT--ATATGTTCCAAA---TAAT---TGTGGAGAAG GAAAACTAAATTTCCCTCTATTCTTCTAGGTTCTT-------AGCTGACACCCCCCT-GTAATAAAAGACAGATTAACAG TAAGAAAACAAGCAGAAGTTTAATAAC--ATGTACACCTCC-TGTATACATGGGAAAGAACAAGGAAAACTGAGT-AACT CCTCAAAATGGCCCAAGCCACCACCTTAAATACCATCTCCAGCTAAAGA-CAGAAGAAGATGT---TGGG---------G GCGGGG--------G--CATTTATGGGAGGTGACCAGGA-AAAGCACAA---TAAAGAAGGGTAAGGCTGTTATGCAGAT TTAAGTCTCTGCCTTCTCCACTGATAAGAGTTTCCAGGGAT--------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------TT--AGTCATCCC-----------TCTCTTGCTGGTACAGAGAGGGAGACA CCCTTACAAATGG--AGACTTCTCTTATAAGTGTAAATGTCTCTTAC-AAAAGGGTAACTTCTACT--CAGTTTTCAGAG CTTTTCCTATGTCTGCTG-TTTCTTATAAA-ATAATCAGCCTAAAATAATCCTTATGCCA-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------AAGAGACATATTTTGGGGTG-----GCAAATTC TGCTCCCCT------TCA---TAAT---C--AAACATGGAAGAAAATTAATGCAGAAAAAA---TAATTGTTTTTAA--- ---ATG--AAGTTG >Myotis_myotis CAATAAAGTAGAATGAAAT--TAATTTTCTAAGAACTGGTTTTTTTTAATATGTTCTAAA---TTAT---TATGGAGAAA GAAAAATAATTTCTCTCTCCCCTTCAAAAGTTCTT-------GGCTAAGATACCGCATATAATAAA----AGGTTAACAG GTGAAAAA----CAGAAGTTTAATCGC--ATGGATATCTCC-TGTATACCTGGGAGAAA-----------GAAGT-AACT CTCTGAAATAGCACATGTCACCACCTTAAATACCATCTCCAGATAAAGA-CTAAAAAAAATGT---TGGA---------G GTGGAA-------GAGTTAGTTAC---AGGTTACCAGCC--AAGCTCAGTTATAAACAAGGGT---GTGGTTATGGGGAT TTAAGTCCCTGCCTTCTGCATTGATAAGAGTTGCTAGA------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------CTAGAGACT---------------TGTCAGCTTGGCACTGA--GGGAGACA TCTTTACAAATGG--AGATTTTCCTTGTAAATGTAAATATCTCTAAT-AAAAGGGTAATTTTTACT--CTGTTTTCAGAG TTTTCCTTGTGTCTGCAG-TTTCTTAAAA--ATAATC----TAAAATAATGCTTATGCTA-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------AAAAAACACATTTTGGAATGG----TTATATTC TGCTCCCCT------TCA---TAAT---C--AAACCTGAGATAAAATTAATGCAGGAAAAA--AAATGTTTCTT------ ---ATC--AAGCTG >Rousettus_aegyptiacus CAACAAAACAGCATGACAT--TAATTTTCTAAGGCCTGTTTTTT----ATAGGTTCCTAA---TAAT---TATGGGGAAA GAAAAATAA---TCCCTCTACCTTTCTAAGGTTGT------TGACTAAAACAATCCTA-TAATAAAAGACAGATTAACAG GAGAAAAACAA---GCAGTTCCATAAC--ATGGATACCTCC-TGTATACACGGGAGA--CTCAGG--------------- ------AATGGCCCAAGCCACCAGCTTAAATTACATCTCCAGCTAAAGACAAAAGAA---------TGGG---------G GGTGGT--------GTGCAGGTATGGGAGGTTTTAAAGC-AAAGCTCCC---TAAATAAGG-TACTGTTATTATGCAGAT TTAAGTCCTAGCCTTTTGCATTGATAAA--TTTCTAGAGATGTTGTCCCTGTTTCCATTTATTAAAACAAAACAAACCAA AAACAAAAACAAAACTAAAAAAACAGTACTGCTTGCCTAGGAATGAATGCTATATTTTCTAGGATTTGACATTTTCAGCA ATCAAACTACTAAAAACAGAATGCTAAATAGAATGATGTCATTTGTTTCCATAGACTATATTAGATATACTCGATATACT AGAGCGTTACAAAAATAATAATAATGAAAGTGAGACATTTCGTGGCAAACTTTGGGAGTAAGGTTGGGACTGTAATCCTC AAGTTATTTTGGGGAAAATGGGAAAAGGGTTAGAGTCAT--------------CCTCTTCCTGTTACAAAGAGGGAGACA CCCTTACAAATGG--AGATTGCCCT---------------------------------------------GTTTTCAGAG CTTTTCCTATGTCCGTTGTTTTCTTAAAA--ATAATCAGCCTAAAATAATCCTTAGGTCAAAAAGACTTTTTTTTTTCAC TTAATAACAATTTCATTTTTTTGCATTTTTATTTTTTTAATTCTTTAATGTCACAACATATTTGACCCCATTTACCACAT CTACCTTCTTCCTCCACCCCCACACTCTCTGGTAACCACTAGTATATTGTCCATGTCCATGAGTCTCTGTTTGTCCTGTT CATTTGTTGCTTTTTCGTTTATATCCCACATATAAGTGACATCATGTGGTTTTCAACTTTTTCTGTCTGGCTTATTTCGC TTAGCACAATTATCTTGAGGACCATCCATGTTGTCGCAAATAGCAGTATTTCATCTCTTCTTATGACTAATATTCCATTG TATATATGTGCCACAGCTTCTTTAGCCAGTCATCTATCGTAGGACACTTCAGTTGCTTTCATGTCCTAGCCACTGCGAAT AATGCTGCTATGAACATCGGTGTGCAAAATATCTTTTTGGATATGGGTTTTCAAGTCTTTGGCAAGTAAATACCCAGTAG AGGGATTGCTGGATCATATGGTAGATCAATTCTTAGTTTTTTGAGGAACCTCCATACTGTTTTCCATAGTTGCCAGTCCC ACCAGCAGTGTATGAGGGTTCCTTTTTCTCCACATCATTTCCAACATTTGTTGTTACTTGTCCTGTTGACAACAGCTATT CTAACAGGTGTGAGATGATTACTCATTGTGGTTTTGATTTGCATTTCCCTAATAGCTAGTGATGATGAGCATCTTTTCAT ATGTTTGCTGGCTACTTGCATGTCTTCTTGGAAGAAGTATCTGTTCCAAAAGACATATTTTGGGGTA-----ACAGAGTC TGCTCCCCT------TTA---TAAC---C--AAACATGAGA-----TTAATGTAAGGAAAA--AAAATA-TTTTTAT--- ---ATAATAAGTTG >Condylura_cristata CAACCAAACAGCAAGACAT--GAATTCTCTAAGGCCA---TTTTTTTTTTATGTTCCAAA---TAAT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------C--AAGCATGAGAGATACTTAATGCAGGAAAAAATATAACATTTTTTAT--- ---ATC--AAGTTG >Erinaceus_europaeus CAACAAAAC--------ATC-CATTTTTCTAACACCTG--TTTTTC--ATATGTTCTAAA---TAAG------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------C--AAATATGGAAAAAAAT-AATGCATGAAAAA--GCAATAGTTTTTCTTTT TTAATC--AGCTTA >Tupaia_chinensis CAACAAAAC--------AT--TAATTTTCAACAATTTG--TTTTGT--ATATGCCCTAAA---TAAT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------CTTAAATGTGTGCAAAATTTAACTGAGGGAAAA--GTAATTATTCTTAC--- ---ATC--AAGGTG Dog50_LINE >L1MA9_3END -----------------------------------------------------------------------------TTT TTCC------AGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATA TACGTATACATTGTGAAATGATTACCACAATCAAGCTAAT---------------------------------------- -------------------------------------------------------- >Canis_familiaris TAACATAATCATGCAACTAAATGCAACAATGCAACTGTATAACTAGAAATAATTTGGC---TTCTCAAATTTTG---TTT CACTTAAAAATTTTTTACTGAGGTATAGTTGACATAT-AGCATTATATGTGTTTC-GATGTATGATATGATGGTTTAATA TTTTTATATATTGTGAAATGATTATTATAA------------------TAATTTTTTT-----TAAAAAGCAAA-----C CTTTCCCCATTTCCTTCA-CTCAGCAAAAGATTTCTTCGCATG-TAACTTTGAATA >Felis_catus TAACATAATCATACAAGTGGATGCAACAATGCAATTTTATTACTAGAAATAATTTGGT---TTCTCAAGAT------TTT TACTTAA---ATTATTCTTGAGGTATTATTGACATAT-AGCATTATATGTGTTTC-GATGTATGATGTAATGATTTGATA TTTCTATATATTGTGAAATGATTACTACAA-------------TAATCAAATATTCTT-----TTAAAGAAAAA-----C CTTTCCCCATGTCCTTCA-CTCTATGAAAGATTTCTTCACACA-TAAC--TGAATA >Manis_pentadactyla TAGTAAAATCATGCAAGTAAATGCTAC--------TATAGTATTAG-AATAATTTGGT---TTCTCAAATA-TT---TTT TACTTTAAAAATTTTTAGTGAGGTGTAATTTACATAT-AACATACTA---GTCTCAGATATAC------ATGACCCAATA TTTGTATATATTGTAGACTGATCACTACAA-------------TAATCTATTTTTTTTA----AAAAAGGAAAA-----C CTTCTCCCATCTCCTTCACCTCAATAAAAGACTT-TTAATACA-TAACTTTGAATA >Sus_scrofa TAACATAATCATGAAAGTTAA--CTAC--------TATAGTACTAGAAATAATTTGGT---TTATCAAATAATT---TTT T----AAAAAATTTTTATTGAGATATAATGGTCAT---AACATTATATTAGTTTCATATGTAACA---AATGATTCAATG TTTATAAATACTGCAAAATGATCACTATAA-----------------AGAAATATGTTT----TAAATATGAAA-----A TCTTCTCTCTTTCCTTCA-CTCAGCAAAAAAATTTTTCATGCA-TAACCCTGAACT >Bos_taurus TACCATAGTCATGAGAACAAAT-CTAC--------TATAGTACTGGAAATATGTTGGT---ACATCAAATAATT---TGT TTTTTAA---AATTTTATTGTGATATAATT--------AACATTA-----ATTTTATGTGTATAACACAATGATTCAGTA TTTGCATATATTGCAAAATTATCCTTACAA-------------TACTAAAAATATTTT-----TAAAAAGA--------A TCTGCCCCATTTCTTTCA-CTCAGCAAAAGATTTCTTCACAC---AACTCTGAATA >Equus_caballus TAAGATAATCATGCAAGTCAACACTGC--------TAGAGTACTAAGAATAATTTAGT---------------------- -------------------------------------------------------------------------------- -------------------------------------------TTCTCAAATA-TTTT-----TTAAAGGAAAA-----A GTCCCCCCATCTCCCTTG-TTCAGTAAAAGATTTCTTCACATG-TAACTGTGCCTA >Ceratotherium_simum TAAGATAATCATGCAAGTAAATGCTGC--------TATAGTGCTAGGAATAATTTGGT---------------------- -------------------------------------------------------------------------------- -------------------------------------------TTCTCAAATTTTTTT-----TTAAAGGAAAA-----C CTTCCCCCATCTCCTTTG-CTCTGTAAAAGATTTCTTCACATG-TAACTGTGCATA >Myotis_myotis TAACA---TTATGCAAATAAATGCTAC--------TATAATACTAGAAATAATTTGAT---------------------- -------------------------------------------------------------------------------- -------------------------------------------TTCTCCAATATATTGT----GAAAAAGAAAA-----C CTTT----ATCTCCTTGA-------AAAATATTTCTTCACATG-TAAC--TGAATA >Rousettus_aegyptiacus TAACATTACCATGCAAATAAATGCCAC--------TATAGTGCCAGAAATAATTTGAT---------------------- -------------------------------------------------------------------------------- -------------------------------------------TTCTCAA---TTTTT-----TTTTAAAAAAA-----C CTTTTCCCATCTCTTTTT-CTCAGCAAAAGATTTCTTCGCATG-TAGCTATGAATA >Condylura_cristata TAACATAACGATGCGAGTGAATACTAC--------CATACTACCAGCGATAATTTGGT---------------------- -------------------------------------------------------------------------------- -------------------------------------------ATCCCATATAACTTTC----TAAAAAGAAAAA----T CTTCTCCCTTTTCCTTTG-TTCCACAAAATATTTCTTCACATGTTAATTGTGAATA >Erinaceus_europaeus TAATATAAT--TGAAATAAAATGCAAC--------TGCAGTTCTAGAGATGATTTGCA---------------------- -------------------------------------------------------------------------------- -------------------------------------------TTTTCAAGTATCTTTCT---CAAAATGAAAA-----C TTTCTTCCACCTCCTTTC-CTTAGCCAAATATTT----------------TGAATA >Homo_sapiens TAATGTCATAATGCAAGT-AATGCCAC--------TATAGTATTAGGAATAATTTGCT---------------------- -------------------------------------------------------------------------------- -------------------------------------------TTCTCAAATATTATT-----TAAAAAGAAAAAAAATA TTTCCCCCATACCCCATG-CTCAGCAAAAGATTTCTTCACATG-TAACTGAGGATA Dog57_LINE >L1MA9_3END -------------------------------------------------------------------------------- --TCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGTACAGCATGGTGACTATAGTTAA TAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCACCACACACAAAAA----------- ----------------------AATGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTC ACAATGTATACGTATATCAAAA-CATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATA AAGCTGG-AAAAA------------------------------------------------------------------- ----------------------- >Canis_familiaris CTGATTATTTCCTTCATTTGAACACCTCTACTTTTTTTTA---TTTCT---TGAAAATCACTTCATATGG---TTAAAA- --------GGTACAAACTGTGAGCTGT--AAG-----TAAGTATGAGGGATGTGATGTACATTAGTATGACTATTGCTAA CACTGTTGTGTGATACATAAGAAAGTTGTCA--AGAATGGATTCTGAA--TTCTTACCACAGACATTTTCTTCTTTTTTT CTGTTTTCTT-----TTCCTTTTATTGTATCTATATGA-TTTATG--TATTTTAGCTGAACCTACTGTGATAATCATTTC ACAA--TATATGTGAATCAAAT-TATGGTGCTG-ATATCTTAAACTTATCCA-GTGATGTATGTCAATTGCTTCTCAATA TAACTGG-GGAAAATAAAAACGAATTTAAAAATAAT---TTTTAAA---ATTATCTT-TTAAAATTAGCT----CATATA TTCTGGGGCTTGATAT-AAAGAG >Felis_catus CTGATTATTTCCTTCATTCGAGCACCTCTGG-TTTTTTAC---TTTT-----GAAAATCACTTTATACAC---TTAAAA- --------GGTACAGACTTTGAGTTAT--AAGTTAAATAAGGAGTAGGGATGTAATGTACAAAAGTATGACTATAGCTAA CACTGCTGTGTGATACATAAGAAAGTTGTCAAGAGAGTAGATACTGAA--TTCTTATCACAAGGAGAAT----TTTTTTT CTTCTTTCTT-----TTCTTTTTATTGTACCTATATGT-ATGATG--TATTTTAGCTGAACATATTGTGATAATCATTTC CCAG--TACATGTGAATCAAGC-CATCATGATGTATGACTTAAATTTATACA-GTAATGTATTTCAAGTATTTATCAATG AAACTCT-AAAAAATACAAAGGAATTTGAAGATAAT---TTTTAAA---ATTGCCTC-TAAAAATTAGCT----CATATA T-CTGGGGTTTGATGT-AAAGAG >Manis_pentadactyla CCCATTATTTCCTTCATTCAAACTCCTCTACTTTTTAAAA---TTTCT---TAAAAATCACCTTATATGG---TCAAAA- --------GGTACAAACTTACAGTTAT--AAGATAAACAAGTACTAGGGATGTAATGTACAA-ATAATGACTATAGTTGA TACTACTGTATGGTATAGAGGAAAATTGTTAATGGAGTAAATCCTAAAAGTTCTCATTACAAGGAGAAA-AAATGTTTTT ATTTTTTCTTCTCTGTTTTCTTTTCTTTGTCTATATGAGAAGATG--GATTTTAGTTTAACCTATTGTAATAATCATTTC AGAG--TACATATAAATC-AAC-CATCATGCTGTATGCCTTAAAATTACA---GTG--ATTTGTCAATTATATTTCAATA AAACTGGAAAAAAATAAAAAGGAATTTTAAAATAAT---TTTAAAA---G-CACCTCATTAAAATGATCTCAAATATATA TTCTGGGACTTGGTGT---GGGG >Sus_scrofa CCCATTGTTTCCCTCATTTGAACACCTCTAC--TTTTTTA---TTTAT---AAAAAATCACTTTATATGT---TCTAAA- --------GGTACACAGTTCCAGTTAC--AAGATAA--AAGTGATAGCATTGTAATGTACAACATGATAACTAGAGTTAA T--TGCTGTATGATATATGGGAA---CATTAAGAGAATAAATCCTAAAAACTCTCATTACAAAGAAAAT----------- CTTTGTTTTT-----TTCTTTTTACTGTATCTATGTGAGATGTTG--TTTGTCAGTTGAACCTACTGCGGTAATTATTTC ACAA--TATGT-TAAATCAAAC-CATAAT--TAAATGTCTTAAATTCATA---ATAATATATGTCAATTATTTTGCAATG AAACTGG-AAAAAATAAAAAGGAATTTAAAAATAAT---TTTAAAA---ACCACTTTATAAAAATTAGTTCAAAAATATA TCCTGGGACTTGGTGT-AAAAGG >Bos_taurus CCAACTGTTTCTTTCATTTGAACACATCTATGTTCTTA-----TTTCTAAAAAAAAATCACCTTATATAG---TCAAAA- --------GGTACAAGCTTCCATTTCT--AAGATAAGTAAGTGCTAGGGTTGTAA--TATAACACGATGACTAGAGTTAG CAATGCTGTGTGAAATATAGGAAAGTAGTTAAGAGGATCAATTATAAAAGTTCTCATCACAAGGAAAAG-AAATTGTTTT CTTTTTTCTT-----TTCTCTTTATTGTATCTATATGAGATGATG--TAGGTTTGCTGAATCTATTGTGGTAATTATTTT ATAA--TACATGAAAGTAAAAAGCATCATACC--ATATCTTGAATTTATACTTGTGATATATGTCAATTATTTTTCAATA AAACTGG--AAACAAGAAAGGAATTTTGAAAATAAT---TTAAAAA---A-AACCATATGA-AATTAGCTGAAAAATATG CTC--GGACTTAGTGT-TGAGGG >Equus_caballus CCCATTATTTCCTTCATTTGACCACTTCTAC-TTTTTTAA---TTTC----------TCATTT-----GC---TCAAAA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------ATCACCTTAGAAGAATTAGCTCAAACATACA TTCTAGGGCTTAGTGT-GAAGGG >Ceratotherium_simum CCCA-TAGTTCCTTCATTTGAATACCTCTACTTTTTTTTA---TTTC----------TCATCT-----GC---TCAAAA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------ATCACCTTATAAGAATTAGCTCAAACATACA TTCTGGGGCTTGGTGT-GAAGGG >Myotis_myotis CCCATTATTTTCTTCACTGGAACACCATTCC--TTTTTAA---TTTC----------CCATCT-----GC---TCAAAT- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------TTCACCTTATAAAAATTAGCTAAAACATATA TTCTGGGACATGGTGG-AAAATG >Rousettus_aegyptiacus TTTATTATTTCCTTCACTTGAACACCTCTCC-TTCTAAAA---TTTC----------CAATCC-----GT---TTGAAA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------ATCACTTTATAAAAATTAGCTGCAACACATA TTCTGAGTCTTGGTGT-AAAGGG >Condylura_cristata CCCATTAATTCCTTAATTTGAA-ACATATAC---TTTTTG---TTTC----------TCATCT-----TT---TTAAAA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------AACACCTTA-AAAAATTAGTTCAAACTTAGA TCA------GTGGTAT-GATGAA >Sorex_araneus CCTATTACAT-TTTCATTTGAA-ATCTTTAA--TTTTAAA---TTTC----------TAATCT-----GC---TAAAAA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------ATCACCTTATA---------------TTATA TTCTGAAACATGGTGTAAAAAAG >Homo_sapiens GCTGTTATATCCTTCATATAAACACCCCCAT--TAAAAAAGCTTTTT----------TCATCC-----GC---TCAAAA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------ATCACCGTATAAAAATTAGCTCAAACATA-- TTGTGGGACTCTGTGT-GAATGG Dog58_LTR >MER21C ----------------------------------------------------------------TGTGTAGGAAAAAACA AAC-------TGTTTTTCT--------------------CTACTCTCACAACACTTCTGNCACCAAATGTGTGGGGTTTT ----------------TCCCACACACCAAGCAATTCTCCAGCGGACACCAGCTGGGTGTCCTACAATTCAATTCAATTCT GACACTATCTACCTGGAGNTAGCGTCAGATCCCACAGGTTAAGGGCTCAGTCCCACAAGACTGCCCCCAC---------- ------------------------------TTCAGACGCCAATC-GCAAGTCCCAGGTTGTGACCTGTACTTCTGACCGA CCGGCTATAAATC-GGGGGTTCCCACGACCCCCTCCTCGGGTTCGA-TAATTTGCTAGAGCGGCTCACAGAACTCAGGGA AACACTTTACTTACG-TTTACCGGTTTATTATAAAGGA----TATTACAAAGGATACAGAT----GAACAGCCAGATGGA AGAGATGCATAGGGCAAG--GTATGTGGGAAGGGGCGCGGAGCTTCCATGCCCTCTCCGGGCGCGCCACCCTCCCGGCAC CTCCACGTGTTCAGCAACCCGGAAGCTCTCCGAACCCCGT-CCTTTNGGGTTTTTATGGAGGCTTCATTACGTAGGCATG ATTGATTANATCATTGGCCATTGGTGATCAACTCAACCTTC--AGCCCCTCTCCCCTCCCCGGAGGTCGGGG-GTGGGGC TGAAAGTTCCAACCCTCTAATCACATGGTTGGTTCCCCTGGCGACCAGCCCCCATCCTGAGGCTATCCAGGAGCCCCCAG CCAAGAGTCACCTCATTAGAACAAAAGACGCTCCTATCACCCAGGAAATTCCAAGGGTCTTAGGAGCTCTG---TGTCAG GAACCGGGGTCAAAGACCAAATATTAGAACAAAAGATTCT----CCTAGCGCCCCTATCGCTCAGGAAATTACAA-GGGT TTTAGGAGCTCTGTGCCAGGAACCGGGGGCAGAGACCAA-ATATATATTTCTTATTATATCACAATATCACA-------- ------------------------------------------------------- >Canis_familiaris GGAT--ATGATTCTGGAGTTTGAGAAGGGCTTCTGGGCTAGGGATATAGATTT---GGGAG---TGTTCAGAAAGG--CA GTCC------TGTGTTTCTCCCTTACTCTCACAGAGCTGCTATACTCAGAACA---------CTAGAGGTGGGTGGT--- ----------------TCTCTCACAACAAGCAATTCTCTG--CAACTCCAGCTGGGTTTCCTACAATTGAACTCAATTCT GCTACCGTGTACCTGGACATAGCATCAGAT--------------GTTCAGTCCTATAAGACCACCCCCAA---------- --------------------------GCAGTTCAGGTGCTAATT-GCAAGC-CCAG-TTGTCACCTCTATGTCTGATCGA TCAGCTCTAAACT-GGAGGTTCCCATGACCTCCTCTTCAGGTTCCATTAATATGCTAGAGTGGTTCACAGAACTCAGGAA AACAGTTTATTT------------TTTATTATAAAAGGA---TATGATAAAGGATACAGGTAAACAAACATCCAGAGGGA AGAGATGAGTAGGACAAG--GTATATGGAAAGGGGCAAGGAGCTTCCACGCCCTCTGCAGTCATTCTTCTCTCCCTGTAC CTCCATGTGTTTGCCCACCTGGAAGCTCTCCAAACTCCATACTTTTAGGATTTGTATGGAGGCTTCACCATGTAGGTGTG ATGCATC-------------------ATTGCCTCCATTTCC--AGCCTCTTTCCCTTCTTTGGAGAGTGAGCTATGGGAT TAAAGCTTTCAAGCTCTTAATCATG-GCTTGGTCTTTTTGGTGACCAGAGCCTATCCAGG------------------AA CCCAGAGTTGTTTCATTATAAGAAAAGACACTGCTATCACCTGGGAAATTCCAAAGGATTTAAGAACTCTG---TGTCAG GAACTAGGATCAAAGACCAAGTTTTAGAACAAAAGATGTT----CTTCGCACTCTAGTCACTCAGGCAATTACAA-GAGT TTTAGGACTTTCATGCCAGGAACTGGGTGCAGAGACCAATATATATATTTTCTGTTATC--------TTACA---GGGAG ---CCATCAGAGACCCACTAAAATATGGGGTAAGTTAATTTATGGAGATTGTAAT >Felis_catus GGAT--GTGACTCTGGGGTTTGAGGAGGGGTTCTTGGATGGAGATATACATTC---AGGAG---TGTTTACAAAGACTCA GTCCTTCTCCTGTGTCCT---CTTACTCTCATAGTGCTGTTACACTCAGAACA-TTCTGACGATAGAAATGTGTAGGT-- ----------------TTTCTTACAACAAGCAGTTCTCTG--CAACCCCAGCTGGGTGTCCTACAATTTAACTCCATTCT GATACTGTGTACCTGGACATTGCATCAGATCCCACAAATTAAGTGTTCAGTCTTAGAAGACCACCACCAC---------- -----------CCCCCCCCCCCACACGCAATTCAGATGCCAGTT-CCAACT-CTAG-CTGTCACCTACGCTTCTGACTGA TTAGCTATAAACA-GGAGGTTCCCATGACCCCCTCTTTAGGTTCCATTAATTTTTTAGAGTGGTTCACAGAACTCAGGAA AACAGTTTACTTACT--------GTTTATTATAAAAGGA---TATGATAAAGGATACAGGT----GAACATCCAGATGGA AGAGATGGCTAGGAAAAGGTGTGTGTGGGAAAGGGCGAGGAGCTTCCACCCCTTGTGCAGGCATGCCTCTCTCCCTGCTC CTCCACATATTTGCCCATCTGAAAGCTCTCCAAGCCCTACACCTGTAGGATTTGTATGCAGGCTTCATCATGTATGCATG ATCCATA-------------------ATTACCTCCATTTCC--AGTCCCTCTCCCTTCTCTGAAGAGTGATGTGTAGGAC TCAAAACTTCAAGCTTCGGATCAAG-GCTTGGTCTTTCTGGTGACCCCCACCCACCC----------------------- -------TTGCCTCCTTAGAACCAAAGACACTGCTATCACCTGGGAAATCCCAAAGGATTTAGGAACTCTG---TGTCAG GAACTGGGGTCAAAGACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNN ---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Manis_pentadactyla GGAT--ATGGCTCTGGAGTTTGACAAAGGGTTCTGGGATACAGCTGTAACTTT---GGGAG---TATTTAGAAAACCTCA GCCCTCCATCTGTGTGTCTCCTTTCCTGTCATATCACTACTACCCCCACAATACTTCTGATACCAGGTGTGTATGTGGGT GTGTGTGTGAGGGGGATTCTTCCCAACCATCAACTCTCTG--TGACACCAGGGGGATGTCCTATAATTTAACTCAGTTCT GACACTGTCCACCTGGAGACAGTGTCAGATCCCACAAGTTAAGGCTCCAGTCCTATGAGACTGCCTCCCCCCATGCCTCC CCATCCCCTCAACACCCCCACCCCATGCAATACAGATGCCAATT-CCAAGT-CCAGATTGTCACCTGCACTTCTGGCTGA TCAGCTATAAATT-AGAGGTTCCTATGATCCCCGCTTCAGGTTCAATTAATTTGCTGGAATAGTTCACAGAACTCAGG-- AGCAGTTTACTTACC-CTCACCAGTTTATTATAAAAGCAGTTTAT-ATAAAGGATACAGAT----AAACAGCCAAATGGA AGAGATGCACAGGACAAG--GTATGTGGGAAGGGGCGTGGACCTTCCATGCCTTCTCCAGGCACATCACTCTCCCTGCTC C--------------------------------ACTCCATACTTCTAGGATTTTTATGGAGGCTTTATCATGTAGGCATG ATTGATC-------------------ATTAACTCCATTTCC--AGCCCCTTTTCCCTCCCTGGAGAATGGAGGGTGGGGC TGAAAATTCCAA-CTTCTAATCGTG-GCTTGATCCTTCTGGTGACCAGTCCCCTTCCAGGAG--------------CCCA CCCAGAGTCGCCTCGCTGGAACAAAATACACTCCTATCACCCAGGAAACTCCAGTGGAGTTAGGAACTCTG---TGTCAG GACCCTGGGTCAAAGATTAAATATTAGAACAAAAGAGGTTGCTAGTTAGTGCTCTTATCACTTTGGAAGTTCCAG-GGGT TTTTGGAGCTCTGTGACAGGACCTGAGGGCAGAGACTAATATACGTATTTTCTGTTATC--------TTACA---CGGAG ---TCGTCAGAGACCCACTAAAATATGTAGCAAGTTAATTT---GAGATAGTAAT >Condylura_cristata GGAT--ATAACTCTGGAACTTGAGTAGGGG-TCCAGCATAGAGGTATAAATTT---GAGAG---TGTTTAGGGAATTTCA GTCCTCC-TCTTTATACTTTCTCAGCTATC-CCCAACTGTCATACTTGCAAC--TTCTGATACCAGCTGCGTGGGGCATT ----------------TTCTGCACAACAAATATATCTCTG----ACAAAAGCT-GATATCTTACAAATTAATAAAAATTT G--ACTATCTACTGGGAGATGGATTGAAGTTCCACAGATTCAGGGGCCACCCCCA--------CCCCCACATAT------ -------------------CTCTTGTGCAGCTCAAATGCCAATTAGCAAAT-CTAG-GTGTCACACATGCTTCTGACGTA TCATC---------AGAAGTTTCCATGACGTCCTCTTCAGATATGATTAATTTACTAGAATGGTTCACAGAATTTAAGAA A--AGTTTACGTACTCTTTGCCAGTTTGTTAGAAAAGAA---TATGATAAAGGGTAT-GAT----GAACACCCAAATGGA AGAGATGCAAAGGTCAAA--------------AGGCACGGAGCTCCCATGTTCT-TCCAGTTGCCTCA---TGCATTACC CCTCAAGTATTAGCAAACCTGGAAGCTCCCAAAACACTGTATTTTTAGGATTTGGGGGGAGGCTTCCTCACACAGTAATG ATAGCTC-------------------ATTAATTCCATTTGCAGAGCCCTTCTCCCTTCTCTGGGCG-------------- -------------CTTCTAATCA---GACTTGATTTTCTGGTG-CCAGACCCCATCCAGG-------------------- -----GGTCATCTTAGCAGAACAAAAGACACTGCCATCACC-AGGAAATTCCAAGGGATTTAGAGGCTCTGTGATGTTAG GAACTGGGGTCAAAACCCAAATATTAGAATAAAAGATGCT----CTTAGTACTCTAATCAGTTAGGAAATTACAA----- -----------------GGAATTGGGGGACACAGTCCAATA-ATATATTTTCTGTTGTC--------TCACA---GGAAG ---TCATCAGAGATCCACTAAAATATATAGCAAGTTAATTTATTGAGATAATAAT >Solenodon_paradoxus GGCC--ATGACTCTAGAGTTTAAGAAGACAGTCTGGGATAGTGATGTAAATTT---GGGAG---TATGTAGAAAACTTTA GTCTTCA---TGCATTTC-------CTCTCACACTGCTACCACACTCACAATAGTTTGAACACCCAATTGATGTGGAGTT ----------------TTCTCCGTAATTAGAAATTCTCTG--CTACACCAGCTAAATTTCCTAGAATATAACTTAATTCT GACACTGTCTTCCTGGAGCTAGAGTTAGATCCCACAGA------ATTCAGTCCTACAATGCTACCCCCTT---------- --------------------------GCAGTTCAGATGCCAATC-ATAAGT-CCAGGCTGTCACCGTTGCTTCTGACCCA TCAGTCATAAATCAGGAGGATCCTATGACCCCTTGTTCAAGCATGATTAATTTGCTAAAGAAGTTCACAGAACTCAGAAA AACAGTTTGCTTACTGTTTTTCAGTTAATTATGAAA------TATGATAAAAGATCTAGAA---TGAATATCCAAATGAA AGAGATGCAAAGGA-AAG--GTATGTGGGA--GGGTACAGAGGGTTCCTGTTCTTTCTGGGTGCCTGACTCTCCTGGCGC CTCCTTGTGTT-----------GAGCTTTCCAAACCCCATA---------------------CTTCATCATGTAGGCATG CTCAGCC-------------------CTTAACTTCATTTCC--AGTC-CTCTGCCTTCTCTGGAGAATGATGTA------ -------------------------------------------------------CCAGG-------------------- -CAACAGTCACCTCATTAGAGCAAAAGACATTGCTGTCCCTCAGTAAATTCCAAGAGATTTAGGAGCTCAG---TGTCAG GAACTGGGGTCAAAGAATAAATATTAGAACTAAAGATGTT-----------CTCTTATTACTTAGAAAATTAGGGTGCAC ATATACATATACATTTCAAAAACTCTATCAATATTGACATGTAGAAATATGTTGTTATT--------TCACA---GGGAG ---TCATCGGAGACTCACTAAAATAGGTAGTGAGTTAATTTATTNNNNNNNNNNN >Sus_scrofa GAGT--ATGACTCTGGAGTTTGAGAAGAGAGTCTGGAATAGAGATATAAATTT---GAGGG------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---TTACCAGAAA-CCACTAAAATATGTAGCAGGTTAAT-TATG--GATAATAAT >Vicugna_pacos GGGT--ATGACTCTGGAGTTTGAGACGGGAGTCTGAAA-AGAGATATAAGTTT---GAGAG------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---TCATTGGAAACCCACTAAAATATGTAGCAAGTTAA--TATT--GATAGTAAT >Equus_caballus GGAT--ATGACTCTGCAGTTTGAGAAGGCAGTGTGAGATCGAGATATAACTTT---GAGAG------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---TTATTAGAGACCCAAGAAAATATGTAGAAAG-TAATTTATT--GAGAGTAAT >Ceratotherium_simum GGAT--ATGACTCTGGAGTTTGAGAAGGAGGTCTGGGATTGAGATATAACTTT---GCGAG------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---TCATTAGAGATCCACTAAAATATGTAGAAAGTTAATTTATT--GATAGTAAT >Miniopterus_natalensis GGAT--ATGA--CTGGAGTTTGAGAAGGAAGCCTGGAATGGAGATATAAGTTG---GGGCG------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---TCGGCAGAGACCCACTAAGATATGTAGCAAGTTAATCTATT--AATAG-AGC >Pteropus_vampyrus GGAT--ATGACTCTGGAGTTTGAGAACGAAGTCAGGAATGGAGATATAAATTT---GGGAG------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---TCATCAGGGACCCACTAAGATATGTAGCAAGCTAATCTACT--GATAGTAAC >Homo_sapiens GTATACATGACTCTGGAGGTTGAGA-GATGTTCTAGGATAAAGATATAAATTT---AGGAG------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---TCACCAGAGACTCACTAAAATACATAGCAAGTTAATTTATTGAGATAGTTAT Dog59_LTR >CARERVR1_LTR -------------------------------------------------------------------------------T GTTGGGGAAGGTCATCGAGAAGACGTGACCGCCGGTTGACCCGTGAGCTGGACCC-------------GGGCAATCAGAG GCTCCTCACCCCCTCCCCTGTCCTTGGAATGT--------GGGTTCCGCTTGCCTTCCCCGCTCCCAGAGGCTGCTCCAA GGACACAGCCTTGAGATAGTGATGT--------GGTGTTGAGAACACCTGNACGGTATACGTGACTGAACCCAGTTAAGG CCTCTATATAAACTTTTAAGATT-TGGCGGGCGGGTGCGGAGATCTACTCGTCTTGCTGCCGCCCAAGACAAGCCTCG-- -TATGTAAGTTCCCTTTGCTTATTAAANC-TGCCACCTACCAACCTGGAGTGGCCTGCCTCTTTCTTCGGTCTCTCCCTG CCCTCTGCGTACGGGGGCCGGTTTCAGA--TTACACCCGGGAAGCTCCCGAGGGGGTTGCGAACCAACA----------- ------------------------------------------------------ >Canis_familiaris TTGTTGAAGCCAAGGAGAAGGAGGTAGA-CCCCCATACCAAGCAAGTCTTTTGTCCAT---TTGGATA---CTCAG---T GTTGGAGGATGTTGTCAAGAGAATGTAACCACCAGTTGACCCAGGAGCTGGACCT-------------GGGCAGTCAGAG GCTCCTCAGCCCCTCCCCTGGCTTTGGAAGAT--------ATGTTCTGTCCACTATTCTCATAGTGGGAGACGTTTTCAA GGATGCACCCTTGAGAGAACAATGT--------GTTGTTGAGACCATCTGGACAGTATATGTGACTGAACCCAGTT-AGG CCTCGATATAAACTTTTAAGATTCTTGCAGGCCAGTATAGAGACCTACTCATCTTGCGGCTGCTCAAGACAACCCTTA-- -TATGTAAGTTCTC-TGGATCATTACACT-TGTCACCTCCCAATCTAGAGTGGTCTGCTTCTTTCTTTGGTCTCTCCTTG CTTTCTTTCTACAGGGACCAGCTTTTAAACCAGCA-------------------------------------CTCAG--- AAAAC----TTTCAT----TGACTAATCCTGACATGATGACTAGAAAATAGATG >Felis_catus TTGTTGAAGCCAAGGAGAAGGAGATAGC-TCCCC-CATCAAGCAAGCCTTTTGCCCAT---TTGGATG---CTCAG---T GTTGGAGGAGGTCATTAAGAGGACATGACCTCTGATTGACCCATAAGCTTGACCT-------------GGGTAATCAGAG GCTCCTGACCTCTTCCCCTGGCCTTGCAATAT--------ACATACGGTCCATTATTCTCACAGTGAGAGATGTTTTCAA GGATGCAGCCCTGAGAAAGCAATGT--------GTTGGTGAGACCATCTGGACCGTGTATGTAACTGAACAC-----AGG CTTGTATACAGACTTTTAAGATTCTCACAGGCAGGTATAGAGATCTACTCATCTTGTGGCTGCCCAGGAAAAGCCTCA-- -TACAGAAGTTCTC-TTGCTCATTAAACCTTGACATCTACCAATCTAGGGTGGCCTGCTTCTTTCTTTGGTCTCTCTTTG CCTTCTTTGTATGGAGGNNNNNNNNNNNNNNNNNN-------------------------------------NNNNN--- NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Manis_pentadactyla TTGCTGGG---------------------CCCCTATACCAAGCAAGTCTCCTGTCTAC---TTGGGTG---CTCAG---T GTTGAAGGAGGTCA---AGAAGGCATGACCACCAGTTGTCCTGTGAGCTGGACCC-------------AGGCAAACGGAG GCTCCTCA-CCCCTCCCCTGTCCTTGGACTGTCCTCGTCCCTTTCCCGTGCACCCTTCCCTCAGTGGGTGTTATTTTCAA GGATGCAGCCCTGGAAGAGCACTGTGGCGTTGCGTTGTTGAGGCCATCTGGGTGTTGTGCGTGACTGAACCCTGTTCAGG TCTCTCTATAAACTTCCGAGGTTCTGGTGGGTAGCTGTGGAGATGTACTCATCTTGCGTCTGCCCAAAACAAGCCTTGGC TTATGTAGGTTCCC-TTGCTTATTAAACC-TGCCCCCTACCAGTCTGGAGGGGTTTGCCTCTTTCTTCGGTCTCTCCTTG CTCTCTGTATATGGGGGCCAGCTCGTGAACCAACA-------------------------------------CTC----- AAAAG----TTTAGTGAACCAACTTATCCTGATACGGTAGCTAGGAAATATATG >Equus_caballus TCGTTGAAGCCAAGGAGAAGGAGCCAGGCTCCCAATACCAAGCAAGTGTTTTTCCCAC---TAGGGTA---CGTAG---T GTTGGAGGAGCCCAATGAGAGGACATCACCACTGGTTGATCCAAGAGCTACACCTGAGAGCTAGAGCCGGGCAATCAGAG GCTCCTCA-CCCATCCCCTGTCCTTGGAATGT--------GTGCTACAACCACTATTACCACAGTGGAAGCTGTTTTCAA GGACGCAGCCTTGAGAGAGCATTGT--------GTTGTTGAGACCAACTGAA-----TACATGACTGAACCCAGGTAAGG TCTCCATATAAACTTTTAAGATTCTGGCAGTCAGGTGTAGAGATCTACTCGTCTTGTGGCTGCCTAAGACAAGCCTCA-- -TCTGTAAGTTCCC-TTGCTTATTAAACC-TCCCACCTATCATTCTGAAGTAGTCTGCTTCTTTCTTTCGTCTCTCCTTG CCCTCTGCGTTCGGGGGCCAGTTTTCGAACTAACA-------------------------------------CTCAG--- AAACA----CTTAATGAATTAACTTATCCTGATACGGTGGCTACGAAATATATG >Ceratotherium_simum TTATTGAAGCCAAGGAGAAGGAGCTAGGCTCCCAAGCCCAAGCAAGTATCTTGCCCAC---TTGGGTG---CTCAG---T ATTGGAGGAGGTCATTGAGAGAATGTGACTGCTGGTTGACCTGAGAGCTAGACCC-------------GGGCAATCGGAG GCTCCTCA-CCCCTCCCCTGTCCTTGGAATGT--------ATGTTCTGACCACCATTCCTACAATGGGAGCCATTTTCAA GGACACAGCCTTGTGAGAACAATGT--------GTTGCTGAGACCATGTGGATGGTATATGTGACTGAACCCAGTTAAGG CCTCTATATAGACTTTTAAGATTCTGGTGGGCGGGTATGGAGATCTATTCATCTTGTGGCCACCCAAGACAGGCCTCA-- -TACGTAAGTTCCC-TTGCTTATTAAACC-TGCCGCCTACCAATCTGGAGCGGT----TTTCCTCTTTGATCTCTCCTTG CCCTCTGAGTTTGGGGGCCAGTTTTCCAACCAACA-------------------------------------CTCAG--- AAAAG----TTGAATGGGCTAACTTA-CCTGATACAGTGGCTAGGAAATATATA >Sus_scrofa TTGCTGAAGCCAAGGTGTAGAATCTAGG-TCTTAATATCAAGCAGGTCTTTAGCCCAC---CTGGGTG---CTCAG---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- AAAAG----TTTAGTAAT-GAACTTATCCTGAGACAGTGGCTTGGAGATACA-G >Bos_taurus TTGTTGAAGCCAA---CCAGAATCTGTG-TCCCAATACCAGGCAAGATTTTTGCCCAC---CTGGTTG---CTCAG---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- AAAAG----TTTAATGCCTGAACTGATCCTGATACAGTGGCTTGGAAATATATG >Myotis_myotis TTGTTGAAACCAAGGAGCAGTATCTAG--TCCCAATGCCAAGCAAGTCCTTTGCCTAC---TTGGGTA---CTCTG---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- AAAAA----TTTCATAAACAAA--TACACTGTTACCGTGACCAGGAAATATACG >Rousettus_aegyptiacus TTGTTGAAACCGAGGAGCAGGATCTAGG-ACCCAATACTAAGCAAGTCTTTTGCCCAC---CT-GGCG---CTCGG---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- AAAAA----TTTAATGAACAAA--CATCCTGTTATAGTGGCTACGAAATATATG >Condylura_cristata TTATTGGAGTCAAAGACTAGGGTTGATG-TCTCAATACTAAGCAAGCCAGAATCCTATATACTGGGGA---CTCTG---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- AAAAA----TTCAATTAATGAAATCATCCTGATATGATGGCCAGAAACT--ATG >Erinaceus_europaeus TTGTTTCAGGTAAGTAGCTGCATCTTGG-CCCCAAAACCAAGCATATCTTTTGTAC-----TTGGGTG---CTCTG---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- AAAAAAAAATGTGATGCTCATGATTATTCTGACATGAACGTAACAAAATACATG >Homo_sapiens TTGCTGAAACCAAGGAGCAGAAACTAGG-CCCCAGTGCCAAGCAATTCTTTAGCCCACT--TTGGGTG---CTCAG---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- AAAAA----TTCAATAAAAGAACTTATCCCAATAGGATGGCCAGGAAAAATATG Dog60_LTR >CARLTR7 --------------------------------------------------------------------TGTCGGGG-AGC AAGAATT---CCTGTCCCCTTCAAGGTCCTTCTAGCTGGACT-AAGAATCAAATTGACATGAGACAGATTAACA------ ---------GGAGAAAATCAAATTTAATAGCGTACGTACGGGGAATCCACACAGACATGGAAATTCCAAAGACAGTCAGG CAAAATGAGGTNTATATGTCATCCTGAACTAAGGAGAAGGGGGTAGGGGTCTGGGACTTCAGA------GGAAAGG---- AATGCANTTCACAGGGCGATAAGAAGAGCAGATGTTTGGTAATTAGATGTTTGCCCTGCCATACAGATGGGTCACTCA-- ----------GATAAAATTTATCTC-------TGCTA--ATAACCCTTATTCTGGGAAAGAC-CC---CCAATTTAGATT CTTCTATGTAGTTAAGGGAGGGGC-AAAAGTTTCTCTTGAGCCCGCAGGGTCTCGATTGCCTTCAGCTCAAAATAATCTT CATGCCAAAGTGGCCCATCTTGGGGCGGCCTGCCCTCGGCCCCTACA--------------------------------- --------------------------- >Canis_familiaris CCTTTGTATCCATATCATCTTGGTTTTCAAACAGCCATGCTTTT-ATATTATCATTTG---ACAC---TATAATGGCAGA TACATTTTCCCTTCTTCTCTTCTAGGTTCTT-GAACTGACCT-AATAACTAAATTGACATAAGACAAATTGACA------ ---------GGAAAAAAATAAATTTAATTTTGTATATAC-AAGAACC-CCAAAGATATGAGA--CTCAATAGCAGTCAGA G-AACTAAGGCTTAGATGCCTCCCCGAGCTAGGGAAT--GAGAT-GGGGCATGGGGCTTCCAAGTATGGGGGGGAGGGTA GGGGCAACTCACAGAAAGATAACAAGAGCTGATGTTTGGTAATCAGATGTTTGTCCTGCCATGCAGATAAGTCTTTCAGA T-------AAAAAATAAGTTATCTC-------TGGTA--ATAGCTGTCTTTCTGGGCCAGGGCCC---CCTATCTAAATT CTCTAAGGCAGTTAAGGGATAGGT-AAAAGTTTTTCTTGAGTCTGCTGGCTTTTGGCTGCCTTCCACTCAAAGCAATCCA CATACTAAAGTGGTCCCTTTCAGGGGGGCGTGCTCTGCTTCCGTGCA---ACAC---CAAACACTACTTTTCCTTGTCGG TCACAACTCAGCTTACAGAATGAGTAT >Felis_catus CTTTTGTGTCCATATTATTTTGGTTTTCAAGCAGCCATACCTTT-ATATTATCATTTG---ACAG---TATAG------- --------------------TCTAGGTTCCT-TGGCTGGTCTAAATAATTAAGTCAACATAAAACAAGTTAACAACAACA ACAACAACCAAAAAAACCTAAATGTAATTCTGTACAAAC-AAAACCCTCCAAAGATATGAGA--CTCAGTGGCAGTCAGA G-AATTGAGGCTTATGTGCCATCCTGAGCTAAGGAAT--GTGCTAGGGGTCTGGGGCTTCCAAGTGTGTATGGAGG---- GGGGCAACTCACAGGAAGATAACAAGAGCCCATGTTCAGTAATCAGATGTTTTCCCTGCCATGCAGGTAGGTCTTTCA-- --------AGAAAAAATGCTATCTC-------TGGTA--ATAGCTCTCTTTCTGAGCCCGGA-CG---CCTATCTAAATT CTTTAAGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNN---NNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNN >Manis_javanica CTTTTATATCCCTGCCATCTTGGTTTTTAAGCAACCATATTTTT-ATATTACCTTATG---ACAC---TAGAGGGACGGA AAAAAATTTCTCTTCCTCCCCTTTAGGTCCTTTGGCTGGTCT-AATAATTAAGTTGACATACAACAGAGTAACA------ ---------GGAGAAAAACAAATTTAATTTTGTATGTAT-GAGAGCC------------------TCACAGGCAGTCAGG C-AGTTGAGGAACGCACACCATCCTGAGCTAAGGAAT-GGGATTAGAGGTCTGG-GCTTCAGA------GGGCAG----- AAGGTGATTCACAGGAAGATAACCAGAGTGGACTTGGGGTAATCAGATGTTTTCCCTGCCATGTGGGTAAGTCTTTCAGA TTTTTAAAAAAAAAATGGTTTTCTC-------TGGTAATATAGCTCTCTTCCTAGGCCAGG--CCTTATCTATCTAAATT CTTTTAAGCAGTTAAGACAGAGGC-AAAAGATTTTCCTGAGTCTCCTGGGACTTGATTGCCTTCAGCTCAAAATATTTCA CATGCCAAAGTGGCACATTTTGGGGTAGCATATTCTGCTCTCCTTTG---ACAC---CAAATATTACTTTTCCTTATTTA TTACTGCTAAACTCCAAGAATGGGTAC >Equus_caballus CTTTTGTATCCGTACCATCTTGGTTTTCAAGAAGCCACTCTTTC-ATATTATCATTTG---ACAC---TGTTGGGGCAGA -AAATTTTCCCTTCTTCTCTTCCAAGTTCTT-TGGCTGGTCT-AATAATTAAATTGACATAAGACAGATTAACA------ ---------AGAGAAAAACAAATTTAATTTCATACATAC-AGGAGCC-CCAAAGGCATGAGA--CTCAAAGGCAGTCAGG C-CGTTGAGGCTTGGATGCCATCCTGAGCCAAGGAGAAGGGGGTAGGGGCCTGGGGCTTCAAA------GGGGAGG---- AAGGCAGTTCACAGGAAGACAGCAAGAGCAG-TGCTGGATAGTCAGATGTTGGCCCTGCTGGGTAAGTAAGTTTTTCA-- ---------GGTAAAAAGTTATCTCTCTTTCTTTCTG--ATAGCTCTCTTTCTGGGTCAGG--CC---CCTATCTGAACT CTTTTAGGCAGTTAAGGGAGAGGT-AAAAA--CTTCCTGAGTTTGCTGGATCTTGATTGCCTTCAGCTCAAAACAATCCA CATGCCAAAGT-GCACATTCTGGGGTGGCACATTCTGCCCCCTCA-----ACAC---CAAATACCACTTTTCCTTACAGA TCATAGCTAAATTTCTGGAGTGGGTGC >Ceratotherium_simum CTTTTGTATCCGTACCATCTTGGTTTTCAAGAAGCCACACTTTT-ATATTACCATTTG---ACAC---TGTAGGGGCAGA -AAATTTTCCCTTCTACCCTTCCAGGTTCTT-TGGCTGGTCT-AATAATTAAATTGACATAAGATAGATTAACA------ ---------GGAGAAAAACAAATTTAATTCCATACATAC-AGAAGCC-CCAAAGATATGAGA--TGCAAAAGCAGTCAGG C-AGTTGATGCTTAGATGCCGTCCTGAACTAAGGAGA-------AGGGGCCTGGGGCTTCAAA------GAGGAGG---- AAGACAATTCACAGGAAGATGAGATGAGCAGATGTTTGGTAAACAGATGTTGGCCCTGCCATGTAAGTCAGTCTTTCA-- ---------GGTAAAAAGTTATCTC-------TGGGA--ACAGCTCTCTTTCTGGGCCAGG--CC---CCTATCTGAATT CTTTCAGGCAGTTAAGGAGGAGGTAAAAAGCTCTTCCTGAGTCTGCTGGGTCTTGA------------------------ -GTGCCAAAGTGGCACGTTCTGGGGT-GTATATTCTGCTCG---------ACAC---CAACTACCACTTTTCCTTACAGA TCATAGCTAGATTTCCGGAACAGGTGC >Myotis_myotis CTAT----ACTATACTATCTTGGTTTTCAAGCAACCATGTTTTTGACATTATCATTTG---ACAC---TGTAGGGACTCC AGAATTTCCCCCTTCTCACCTTCAGGT-------------CT-AATAATTATACCGACATAAAATAGATTAACA------ ---------GAAGAAAAACAAATTTAATTTCTTTTGTAT-AGGAGCC-CCCAAAATATGAGA--CTCAAAGACA-TCGGG C-AATTGAGGCTTAGATGCCATCCTGAGCTAA--------------------GATGCTTCAAAA-----GGGGAGG---- CGGGCAGTTCACAGA---ACAAGAAGAGCAGATGTTTGGTAATGAGATGCTACCCCTGCCATGCAGGTAAGTGTTTCA-- -----------GACAAGGCTACCTG-------TGGTA--ATCGCTCTCTTTCTGGGCCAGTC-CC---CCTCTCTAAATT CTTTTAGGCAGTTCAAG---------------------GGGTCTGTTGGCACTTGATTGCCTTCAGTGCAAAATAATCCA CATGCCAAAGTGGCACATTTAGGGACCGCCTAGCCAGCTCCCCTTCA---ACGC---CAAACACTGCTTTTTCTTACTTA TCACGGGGAAACTTCTACTATGGGTTT >Rousettus_aegyptiacus CTTTTGTAGCCGAACCATCTTGGTTTTTAAGCAGCTATACTTCT-ACATTATCATTTG---ACAC---TGTAGAGGCAGA AGAATTTTCTGTTCTTCCCTTTTAGGTTATT-TGGCTGGTCT-AATAACTAAATTAACAGAAGACAAATTAATA------ ---------GGAGAAAAACAAATTTAATTTCTTATGTAT-GGGAACC-CCACAGATA--AGA--TTCTAAAGCGGTCAGG C-AATTGAGGCTTACATACCATCCTGAGCTAAGCAAT--GGAATAAAGGCCAGGAGCTTCAAA------GGTGGGG---- AGGGCAATTTGCAGGAAAATAACAAGAGCAGGTGCTTGGTAATCAAATGTTTG-CCTGGCATGCAGGTAAGTCTTTCA-- --------GAAAAAAAAGTTATCTC-------TGGGA--GCAGCTCTGATTCTAGGCATGCT-CC---CTTATCTAAATT CTTTTAGACAGTTAAGGGACAGGT-TAAAGGTTTTCCTAAGTCTGCTGG-TCTTGGTTGCCTTCAGCTCAAAATAATCCA CATGCCAAAGTGGTACATTTTGGGGCAGCCTATCCTGCTCCTCTTCA---ACAC---CAAGTATGACTTTGTCTTATTTA TCATGGCTAAACTTCTGAAATGGGTGT >Sus_scrofa CTTTTGTATTTGTGCCATCTTGGTTTTCATTGTGCCACACTTTT-ATATTATGATTTG---ACAC--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------CAAACACTGCTTTTCCTTATTTG CCATGGCTAAACTTGCAGAG-GGGTGC >Bos_taurus TTTTTGTATTTTTGCCATGTTGGTTTTCAAGCTGCTATACTTTT-ATATTATTATTTG---ACAG--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------CAAACACTACTTTTCCTAATTTG TCATGGCTAAATTTCTGAAAAGTGTGC >Condylura_cristata CTTTTACATTCATGCCATCTTGGTTTCCA-GCAGTCATGTTTTT-ATATTATCACTTA---ACAT--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------CAAATAT--CTTTCCTTTCCTTA TCACAATGAAATTTCTAGAGTGGCTGC >Erinaceus_europaeus CTTT-GGATGCATGCTATCTTGGTTTATGAGCACATGTGTTTTC-ATGTTATCATTTG---ACAC--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------CAAATAATACTTTTTCCTATTTA TCATGG-TAAACTTTTGTAATGGGTGC >Homo_sapiens CTTTTGTAGTTACAGCATCTTGGTTTTCAAGCTGCCATTATTTT-TTATTATCATTAG---ACAC--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------CACATCCTACTTTTCTTTCTTTA TCACAGCTCAACTTCTGGAATGGGTAT Dog62_LINE >L1MA9_3END -------------------------------------------------------------------------------- ------------TTTTTCCA-----GCTTTATTGAGGTATAATTGACAAATAAAAATTG--TATA-TATTTAAGGTGTAC AACGTGATGTTTTGATATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATA GTTACCA---TTTTTTTGTGTGTGGTGAGAAC------------------------------------------------ -------------------------------------------------------------------------------- ------------------ACTTAAGATC---TACTCTCTTAGCAAATTTCAAGTATACAATACAGTATTATTAACTATAG TCACCATGCTGTACATTAGATCTCCAGAACTTATTCATCCTGCATAACTGAAACTTTGTA-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------- >Canis_familiaris AGAAGATTCAGTTTAGCACCTGGCTCTTTGTCATC--CCGTCTTGACC------------------------TCTA---A TGGTTT---A---------------TTTTTACTGAGGTATAGTTGACATAT-AACATTA--TATT-AGTTTCAGGTGCGC AACACAATGATTTGATACTTAGATATATTGCAAAGTGATCACCACAGTAAGTCTGATTAACTATACTGTTACTATACTGA GTTACAAAA-TCTTTTTTCTTGTGATAAGAAC------------------------------------------------ -------------------------------------------------------------------------------- ------------------TTTTAAGATC---TACTTTCTTACCAATTTTTAAATATGCAACACAGTATTATTAACTGTAG TCACTGTGCTGTACATTTCAT----------------------GTGATTGCAAGTTTGTAAAGTCAAATGAA---CTG-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------ATCGTCT---TTAACT-T ATGTACATATTTATCTGTGAAACT-GTAAAATGTTTGAGGGAGGGG >Felis_catus AGGAAATTCAGTTTAGTACCTGGTTTTTTGTCACC--CTATCTTGACC------------------------TCTA---A TGGTTT---ATATTATTTTA--------TTTTTGAGGTATAATTGACTTAT--ATATTAGTCATT-AGTTTCAGGTGTAT AAGATAATGATTCAATATTCACATGTATTGCAAAATGATCACCCCAGTAAGTCTAATAAAT--ATCTGTCACCATACACA GTTACAAA--TTTTTTTTCTT---ATAAGAAC------------------------------------------------ -------------------------------------------------------------------------------- ------------------TTTTAAAATC---TACTCTTTTAACAATTTTCAAGTATGCAATACAGTATTATTAACTATAG TTACTATTCTGTATGTTTCTT----------------------GTGATTACATGTTTGTAAAGTAATGTAAA---CTC-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------ATGGTTT---TTAACTAT GTGTATAGATTCATCTGTGAAACT-GTGAATTATTTTAGGGGAGGG >Manis_pentadactyla ATAAGATTCATTTTGGCATTTGGCTCTTTTTTATC--CTTTCTTGATT------------------------GCTA---A TGGTT----A-TTTATTTTA------TTTTATATAAGTATAATTGACATGT-AACACTA--TATT-AATTTCAGGTGTAC AACATAGTGATCGATTATCTGCATATATTGCAACATGATCACCACAATATGTCTAGTTAAC--ATTCATCACCAAAAATA GTTA------GTTTTTTCCTTGTGATGAGAAC------------------------------------------------ -------------------------------------------------------------------------------- ------------------TTTTAAGATC---TACTTTTTTAGCAACTTTCAAATATGCAATACAATATTATTAACTATAG TCACCATGTTGTACATTACAT----------------------GTGATTACATGTAAATG---------------CCA-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------ATGGCTT---TTAACTAT AATTACAAATTCGTCTGTGAAACT-GTAAATTGTTTGAGGGAAGGG >Sus_scrofa GCAAGATTCAGTTTAGCACTTGGGTCTTTGTTGTT--CTATCTTGATC------------------------TCTA---A TGGTCT---ATTTTATTTTATTATTTTTTAATTGAGGTATAATTGATATAT-AACATTA--TATTAAGTTTCAGGTATGT AACCTAATGATTTGATATTTGTATACATTGCAAAATAATCACCACAGTAAGTCTAGTTAAC--ATCTGTGTTCATATATA GTTACAAAACTTTTTTTTCTTGTGATGAAAAC------------------------------------------------ -------------------------------------------------------------------------------- ------------------TTTTAAGATATAGTACTCTTTTAGCAACTTTCAAATATACAA-----TATTGTTAACTAT-- -CACCATGCTGTACATTACAT----------------------GTAATTACATGTAAAGA---------------CTATT TTTTTTTCTCATCTTTTTAGGCTGCACCTGTGGCATATGGAAGTTCCCAGGCTAGGGGTTGAATTGGACCCCAGCCTATG CCACAGCCCGGCCCCTACCCCACAGCTCATGGGAATGCTGGATCCTTAACCCACTGAGCAAGGCCAGGGGTTGAACCTGC ATCCTCATGGATGCTAGTTGGGTCCATTACCACTGAGCTACGACAGGAAAGTTTAAAGGCTAATGGTTT---TTAACTAT AAGTACACATTCATCTGTGAAACT-GTAA-TTGTTTGAAAGAAGGG >Bos_taurus GTAAGAAACAGGATAGCACTTGGCTGTTTGTTGTT--CTATCTTGATA------------------------TCTA---A TGGTTT---A-TTTATTTTATTATGTTTTTATTGTGTTATAATTGACATAT-AACATTA--TATT-AGCATCAGGTGTAT AACATAATGATTCAATATTTGTATGTATTGCAAAATGATCACCACAGTAAGTCTAATTCAC--ATTCATCTTCATAC--A GTTACAGAACATTTTTTTCTTGTGATGAGAATTTTTTAAGATCTACTCTTGGGACTTCCCTGGCAGTCCAATGGTTAGGG CTCTATACTTCTACTGCAAGGGGGCACAGATCCGATTCCTGCTTGGGGAACAAAGATCCTGCATGTCTCAAGGCATGGCC AAAAAAAAAAAAAAAAAATTTTAAGATC---TACTTTCTTAGCAACTTTCAAATATACAATACAGTATCATTAATTATTA CCA-TATGCTGCACATTACAT----------------------GTAATTACATGTTAAAGA--------------CTA-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------ATGGTTT---TTAACTAT ATGTTCCTATTCATCTGTGAAACT-GTAAGTTGTCCAAAGGAGGGG >Equus_caballus GTAAGATTCAGTTTAGCACTTGGCTGTTTGTTGTC--CTGTCTTGGTC------------------------TCTA---A TGGTTT-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------TTAACTAT GTGTATGGATTCATCTGTAAAACT-GTAAATTCTTTGAGGGACAGG >Ceratotherium_simum GTAAGATTAAATTTAGCATTTGGCTCTTTGGTGTC--CTGTCTTGGTC------------------------TCTA---A TGGTTT-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------TTAACTAT ATTTACAGATTCATCTGTAAAACT-GCATATTGTTTGAGGGA-GGG >Myotis_myotis ATAAGTTTTAATTTAGCCCTTGGCTCTTTGTTGTC--CTATCTGGATC------------------------TCTA---G TGGTTT-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------TTA-CTAT ACATTCTCA--CATCTGTGAAATTGGTAATTTGTTTGAGGGA-GGG >Rousettus_aegyptiacus ATAAG------TTTAGCACTTGGCTCTTTGTTGAC--CTATCTTGATC------------------------TCTA---A TGGTTT-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------TTAACATT ACTTTTTCA--CATCTATGAGTTC-TTAAATAGTTTGAGGAAAGAG >Condylura_cristata ATCAAACTCAATTTAGTGCTTGGCTCTCTGTTGTC--CTATCATG---------------------------TCTA---C TGGTTT-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------TTA-ATAT AAGGACAGTTTTTTCTGTGAAACT-GTACATTGTTTGAGGGAAAGG >Solenodon_paradoxus ATAAAATTCACTTTCACACTTGGATTTTTGTTGTC--CTGTCTTGATC------------------------TCTG---A TGGATG-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------TTAACTAT A----CACATTCATCTGTGAAACT-GTAAATTGTTTTATCATGGGG >Homo_sapiens ATAAGATTCAGCTTATCACTTGGCTCATTGTTGTTCTCTGT--TGATCGCAACATGTACGGATTCTATATGTACAA---A TG--TT-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------TTAGCCAT AGGTACAGATTCATCTGTGAAACT-GTAAATTGCTTGAGGAAAGCA Dog77_LTR >MLT1A0 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------TGCTATGGTCT GAATGTT-TGTGTCCCCCCAA-------AATTCATATGTTGAAA-----CCTAATCCCCAATGTGATGGTATTAGGA-GG TGGGGCCTTTGGGAGGTGATTAGGTCATGAGGGCGGAGCCCTCATGAATGGGA-TTAGTGCCCTTAT-AAAAGAGACCYC AG-AGAGCTCCCTTGCCCCTTCCGCCATGTGAGGACACAGTGAGA----AGGCGCCGTCTATGAACCAGGAAATGGGCCC TCACCAGACACTGAATCTGCCGGCGCCTTGATCTTGGACTTCCCAGCCTCCAG--------------AACTGTGAGAAAT -AAATTTCTGTTGTTTATAAGCTACCCAGTCTATGGTATTTTGTTATAGCAGCCCGAACAGACTAAGACA---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------ >Canis_familiaris GCTCAT-GCTCTAAAGCACGCGCTGTGGGCAACGCCACTGCTATCACACCTGCTGCAACCAGCTGGCAAAACTGAAGTGT GTCCC-TTG-CTGGGCAAAATCAACCCAATG-CCTCGGACATCTGCAAGC--TAC--------AAAGGAACTGCTATTTC TTAAGGTAGA--CTTTGCTAATGGAGCT-ACATTTTCTCTTAA-TCAT------AACAGT-ATATGCCAAAC-CAACTCT CCTAA----AACAGTGTTAAAGTAGAGT-AAGGGCCTTAATGAGTCACA-TCAGGACATGAGGCAACAGCACT-ACCCTC ATCTT--GTGCCTCGTTCTGGTGGACATTTCTGCCT-AAGCAGCTCTAAGC---ATACATTAACACGATACAATCTGGCA CAA---CCTCAAGGATTCA-CTGTGCAGGGCACAA---AATAGAGCTTTATTATCATCCATGCACTAGTTAATGGGAATA CATAATTCCATAATAACAGTTTCAAGTGAAATTGGTCTTTAAAATGGTAGTTCTTTGGTGGGAACC---TGCCATGGTCT GAATGTT-TGTGTGCCACCAA-------AATTGATGTGCTGAAG----TCCTAAAGTCCAATGTAATGGTGTTGGGA-GA TGGGGCCTTTGAGAGATGATTAAGTCATGAGGGTGGAGC-CTCATTAATGGGG-TTAGTGCTCTTAT-AAAAGAGACCCT GA-AGAGCTCCCTTCCACTTTCCTCTGTGTGAGGACTCAGCAAGT----AGA----GTCTATGAACCAGGAA----GCCC TCACCAAACAACAAATCTGCTGCA--CATGATTGTGGGTTTT-CAGGTTCTAG--------------ATTTGTAAGAAAT -AAACATTTGGTGTTGATAAGTGACCCAG----TGCTATTTTGTTATAACAACCCAAATGGACTAAGACA---GAACATG AATGCTATAAAATGTGGCACAAACTAGAGGA-TAACTGTGCAAAGTACAAAATGGAGCTTTACTGCCTCTACCCCGGTTA ATTGGAATATA-TA-------------------------------ATTCCATA-ATAAAAACTGAAAATCAAATTGGTCA TTAGAATGGTAGTGCTGC---AGTGGGAACT---CAACCACTATAAAACTAAAGCATAG--TTCTCCTCTATCTGGAAAA GTTGTC >Felis_catus GCTCAC-ACTCTAAAGCCTGCACTGTGGGCAGTGCCATTGCTGTCACACCTGCTGCAACCAGCTGGCAAAACTGAAGCGT GTCCC-CTGGCTGAGCAAAGTCAGCCCAATG-CCTCGGACATCTGCAAGC--TAC--------CAAGGCATTGCTATATC TTAAGGTGGA--CTTTGCTAATGAAGCT-ACATTTTCTCTTAA-TCGT------AACAGT-ATATGCCAAAC-CAACTCT CCTAA----CGCAAGGTTAAAATAGAGT-AAGAACCTTAGTGAGTCACA-CCAGGGCATGAAGCAACAGCACC-ACCATC ATTGT--GTGCCCCATTCTGGTGGACATTTCTGCCT-AAGGAGCTCTAAGC---ATACATTAACACTCTAAAATCTGGCA CAA---ACTCAAGGATTCA-CTGCTCGGGGTACAA---AATGGAGCTTTACT---GCCTCTTTGCTGGTTAATTGGAATA TATAATTCCATAATAACAATTCCAAGTCAAATTGGTTTTTAAAATGGGAGTTCGTTGGTGGGAACC---TGCCATCGTCT GGACGTT-TGTGCCCCACCAA-------AATTCATATGTTAAAG----TCCTAATGTCCAATGTGATGGTATTGAGA-GA TAAGGCCTTAGAGAGGTGAGCAGGTCATGAGGGTGGGGC-CCCATCAATGGGA-TTAGT--TCTTAT-AAAAGAGACCCC AC-AGAGCTCCCTTGCCCTTTCCTCTCTGTGAGGACATAGAAAGA----AGG---------TGCACCAGGAA----GCCC TCACTGATCAGCAAATCTGCTATA--CGTAATCCTGGATTTTCCAGGTTCTAG--------------ATTTGCAAGAAAT -AAATGCTTGC-----ATAAGCGACACAC----TGCTATTTT-----AACAACCCAAATGGACTAAGACA---GAACATG AACCCTATAAAATGTGCCACAAACTCAAGGATTCACTGTGCAAGGTACAA-ATGGAGCTTTACTGCCTATGCACTGGTTA ACTGGAGTATA-TA-------------------------------ATTCCATA-ATAAACATTCCACACAGGGTTGNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNN >Manis_pentadactyla GCTCGCAACTCTGAAGCACGCACTGTAGGCCACGCCCTTACTGTGACACCTGCTGCAACCAGCTGGCAAAACGGAAGTGT GTGCC-CTGACTGGGTGGCATTGGCACAGAG-CCAGGGACATCTGCAAG---GAC--------CAAGGCACTGCCCTTCC TTAAGGCAGG---TTTGTGAGGGGAGCT-ATATTTTCTCTCAG-TCAT------AACAGT-ATCTGCCAAACACAG-TCT CATAA----AGCAGTGTTTCAACAAAGT--AGAGCCTTCATGAGTCACATTCAGGCCATGAGGCAGTAGGACT-AC---A GTCCT--GTGCATCATTCCAGGGGATATTTCTGCCT-AAAGAGCTCTAAGC----TACACTAACACTAAAAAATCTGGCA CAA---ACTCAAGGGTTCA-CTGTGAAGAGTACAA---AACAGAGCTTTACT---GCCTGTGTGCTGGTTAATTGGAATA TATAATTCAGTAATGAAAATTCTAAATCAAATTGGTCTTCAGAATGGCAGTAGTTCATTGGGAATT---TGCTATGGTTT GAATGAT-CGAGCCCCACAA--------AAT-----------------TCCCATTGCCCACTGTGATGGTACTGGGAGGG TGGGGCCTTTGGGAGGGGCTGAGGTCATGAGGACAGAGCCCTCAGGAATGGGC-TTTGTA---TTAT-AAAAGAGACC-C AC-ACACATCCCTAGCCCCTTACACCATGTGAGGACACAGCAAAA----AGGCACAGTCTATAAACCAGGAA----GCCA TCGCCAAACAGCAGATCTGCCACCACCACGATCCTGGACTTTCCAGGCTCTGG---------------ATTGTGAGCAAT -ACACGTTTGTTGTTTATAAGCCACCCAGTCCATGGTGTCTTGTTGTAACAGCCCAAATAGACTAAGACA---GAACATG AACACTATAAAATCTGGCCCAAACTCAAGAATTCACTATGCAGGGTACAAAATGGAGCTTTACTGCCTATGCACTGGTTA ATTGGAATATA-TA-------------------------------ATTCTATA-ATAAAAACTCTAAATCAAATTGGCCT TCAGAATGGTGGTTCTTC---AGTGGGAACC---CAACCACTGTGAAACTAAAGCAGAG--CTCTC---TACCTG--AAA ATAGTA >Sus_scrofa GCTTGC-ACTCTAAAGCATGCAGTGTTGGCAATGCCACTTCTATTACACCTGCTGCAACCAGCTGACAAAACTGAAGTGT GTCCC-CTGACTGGGC-AAGTCAACCCAATG-CCTGGAACATCTGCAAGC--TAC--------CAAGGCACTGATATTTC TTAAGGAAGA--TTTTGCTAATGGGGCT-ACATTTTCTCTTAA-TCAT------GGCAGT-AAATGCCAAACACAACTCT CCTAA----AGCAGTGTTAAAATAGAGT-AAGTGCCTTAATGAGTCACA-TCAGGCCAGGAAGCAACAGCACT-AC---C ATCTC--GTGCATCATTCTGGTGGACATGTCTGCCT-AAGGAGCTCTAAGC---ACACATTAAGACTATAAAATCTGGCA CCA---ACTCAAGGATTCA-CTGCGCAGGGTACAA---AACAGAACTCTATG---GCCTCTGTGCTGGTTAACTAGAACA CATAATTCCATAATAAA-ATTCCAAGTCAAATTGGTCTTTAGAATGGCGATTCTTCAGTGTGAACC---TGCAATGGCCT GAATGTTGTGCCCTTCCCCCA-------AACTCATGTGTTGAAA----TCCTAATGGGCAATATGGTAGTATTGGGA-GG TGAGGCCTTTGGGAGATGCTTAG-----------------CTCATGCATGGGA-CTAGTGTCCTTAC-AAAAGAGACC-C CC-AGATCTCCCTGGCCC-TTCTACCATGTCAGGAAACAGACAGA----AGGCACCATCTATGAACCAGGAA----GCTC TCACCAAACACCAGATCTGCTGATGTCATGATCCCGAACACCCCAATCTCCAG--------------AACAATGGGAAAT -AAATGTTTACTGTTTATAAGCTACCAAGTCTGTGCTATTTTATTGTAACAG-CTAAGCAGAGCAAGA-------ACATT AACACTGTAAAATCTGGCACCA--------GTTCACTGTGCAGGCTACAAAATAGAACTTTCCTGCCTATGCACTGGTAA ATTGGAATATA-TAATAATATATTATAGATAGATAAATAGATAATATTCTACA-ATAAAAATTCCAAGTCACATTGGTCT TTAGACTA----------------------T---GAACCACCACAAAACTAAAGCACAG--CTCTCCTTTATCTAGAAAA CTGGTC >Tursiops_truncatus -------------------------------------------------------------------------------- --------------------------------CCTTGAAGGTCTGTAAGC--TAC--------CAAGGCACCGACAATTA ATAAGGTAGA--TTTTGCTAATGGAGGT-ACATTTCTTATTAATTCAT------GGCAGT-ATATTCCAAGCACAGCTCT CATAA----AGCAGTGTGAAGATAGAGTAAAAAGCCTAGATGAGTCACA-TCAGTCCACGAGGCAACAGCACCGAC---T GTCCT--GTGCATCACTCTGGCGGACATTTCTGCGTAAAGGAGCTCTAAGC---ACAGATTAATACTATAAAATCTGGCA CCA---GCTTAAGGATTCAGCTGTGCAGGGTACAA---AATGGAGCTTTACT---GCCTATGTGTTGATTAACTGGGATA TATAATTCCATAATAAA-ATTCCAAGTCAAGTTGGTCTTTAGAATGGCGATTCTTCAGTGGAAACC---TGCTACGGCCC GAAAGTT-GTTTCCCCCCAAA-------AATTCATACGTTGAAA----TCCTAATGCCCAGTGTGATGGTATCGGGA-GG TAGGACCTTTGGGTGGTGCTTAGGTCATGAGGG--GAGCCCCTCTGAATGGGATTTAGTGCCCTTAT-AAAAGAGACCCC AC-AGAGCTCCCTAGCCCCTTCCACCATGTTAGGGACCAGAGAGA----AGGGACCATCTATGAACCAGGAA----GCCC TCGCTAAACACCAAGACTGCTGATGCCACGATCCTGGACTTCCCAACCTCCAG--------------AACTGTGAGAAAT -AAACGTTCATTGTTTATAAGCGACCCAGACGATGTTATTTTATTACAACAGCCCGAGCAGACTAAGACA---GAACATT AACGCTATAAAATCTGGCACCAACTCAAGGATTCACTGTGCAGGGTACAAAATATCACTTTACTGCCTATGCACTGGTTA ATTGGAATATA-TA-------------------------------ATTCCATA-ATAAAAATTCCAAGTCAAATTGTTCT TTAGAATGTTAGTTCTTC------------C---TAACCACTATGAAATTAAAGACTTG--CTCTCCTTTATCTGGAAAA GTGGTC >Equus_caballus -----------------------------------CATTGCTGTCACAACTCCTGCAACCAGCTGGGGAAACTGAAGTGT GTCCA-CTGATGGGGCAAAGTCAACCCAATG-CCTTGGACATCTCCAAGC--TAC--------CGAGACATTGCAATTTT TTAAGGTAGA--TTTTGCTAAAGGAGCT-ACATTTTCTCTTAA-TTCT------AACAGT-ATATGCCAAACATAACTCT CCTAA----AGCGGTGTTAAAATAGAGT-GAAAGCCTTAATGAGTCACA-CAAGGCCATGAGACAGCAGCACT-AC---C ATCTT--GTGCCTCATTCTGGTGGACATTTCTGCCT-AAGGAGCTCTAAGC---ATACATTAACACTACAAAATCTGGCA CAA---ACTCAAGGACTCA-CTGTGATGGGTACAA---AATGGAGCTCGACT---GCCTGTGTGCTTGTTAATTTGAATA CATAATTTCATAATGACTATTCTAAATCAAATTGGTCTTTGGAATGGCAATTCTTCAGTGGGAACC---TGCTACGGCAT GAATGTT-TGAGTCCCTCCAA-------AATTCATGTGTTGACATCCTTCCTAATGCTGAAAGCGACGGCATTGGGA-GG TGGGGCCTTTAGGAGGTGCTTTGGTCATGAGGGTAGAGCCCTCATGAATGGGA-TTAGTGCTCTTGTAAAAAGAGGCCTC CGCAGAGTTCCCTAGCACCTTCCACCATGTGAGGACACAGTGAGACTATGAACCACATCGATGAACCAGGAG----GCCC TCACCAAACACCCAATCTGCCAATGCTGTGATCCTGGACTTTCCAACCTCCAG--------------AACTCTTAGAAAT -AAATGTTTGCTGTTTATAAGATACCCAGTGTGTGC-ATTTTGTTATAACGGACTGAAAAGACTAAGACA---GAACATT AACACTATAAAATCTGGCAAAAACTCACAAATTTACTCTGTAGGGAAAAAAATAGAGCGTTATTGCTAATACACTGTTTA ATTGGAATATA-TA-------------------------------ATTCTATA-ATAAGAATTCCAAGTCAAATTGGTCT T-ATAATAGTGGTTCTTC---ACTGGGAACT---TAGCCACTATGAAACTAAAGCATAG--CTCTCCTTTATCTGGAAAA ATGTTC >Ceratotherium_simum -------------------------------------------------------------------------------- ------------------------------------------------------------------GGCACTACAATTTC TTACGTTAGA--TTTTGCTAATGGAGCT-ACATTTTCTCTTCA-TCAT------AACTAT-ATATGCCAAACACAACTCT CCTAA----AGCAACGTTAAAATAGAGT-GAAAGCCTTAATGAGTCACA-TCAGGCCACGAGACAACAGCACT-AT---C ATCTT--GTGTGTCATTCTAGTGGACATTTCTGCCT-AAGGAGCTCTAAGC---ATACATTAACACTATAAAATCTGGCA CAA---ACTCAAGGATTCA-CTGTGAAGGGTACAA---AATGGAGCTTTACT---GCCTATGTGCTGGTTAACTGGAACA TATAATTTCATAATAAAAATTCCAAATCAAATTGATCTTTAGAATGGCAGTCCTTCAGTGGGAACC---TGCTATGGCCT GAATGTT-TGTGTTCCCCCAA-------AATGCATATGTTGACA----TCCTAATGCCCAATGTGATGGCACTGGGA-GG TGGGGCCTTTGGGAGGTGATTTGGTCGTGAGGGTAGAGCCCTCATGGATGGGA-TTAGTGTTCTTAT-AAAAGAGGCCCC AG-AGAACTCCCTAGCCCGTTCCACCATGTGAGCACACAGTGAGA----AGGCACCATCTATGAATCAGAAA----GCCC TCGCCAAACACTGAATTTGCCAATGTTGTGATCTTGGACTTTCCAACCTCCAG--------------AACTGTTAGAAAT AAAATGTTTGTTATTTATAAGCTAGCGAGTCTGGCCTATTTTGTTATAACAGACTGAACAGACTAAGACA---GAACATT AACACTATAAAATCTGGCACAAACTCATAAATTTACTACGCAGGATACAAAATAGAGCTTTACTGCCTATGCACTGGTTA ATTGGAATATATTA-------------------------------ACTCCATA-ATAAAAATTCCAAGTCAAATTGACCT TTAGAATAGTGGTTCTTC---AGTGGGAACC---CAACCACTATGAAACTAAAGCATAG--CTCTCCTTTATCTGGAAAA GTGGTC >Condylura_cristata -----C-AC-CAAAAGCATGCACTGCAGGCAATGCCAGGGCTGTTACACCTGCTGCAACCAGCTGGCAAAACCGAAGGGT ATCTC-CTGACTGGG--AAGTCAACCCAGTG-CCTCAGACATCCACAGGCTATAC--------AAAGATGCAGCTATTTC TGAAGGTAGATTTTTTGCTAATGGAG-T-ACATTTTCTCTTAC-TTGT------CACAAT-ATATGCCAAACACAACTCT CTTGA----AACTG-GAAAAAATAGAGT-AAATGCCTTAATGAGTCACA-TCAGGTGATGA-----CAGCACT-AC---C ATCTC--ATTCCTCATTCTGATGGACAGTTCTGCCT-CAGGAGCTCTATGC---ATGCATTAACACTAGAAAATCTGGCA CAA---ACTCAAGGAATCA-CTGTGAAGGGTACAA---AACAGAGCTTTATA----------TGCTGGTTAATTGGAATA TACCACTCCATAATAAGAATTCAGAGTCTAATTTGCTCTCAGG----------------GAGAACC---TGTTAAAGTAT GGATGTC-TCTGTCCTCTCCCCATCCCCCATTCATGCGTTAAAA----TCCTAACACCCCATGTGAACACATGTGGA-GA CAGGGCCTTGGGGAGGTGCTTAGGTCATAGGGTTGAAGCTGTTAAGAATGGGG-CTGGTATCCTCAT-GAAAGAATCCCC C--AGAATTCCCTAGTCCCCTCCACTGTCTCAGGACACATGGAGA----AGATGCTGTCAATGAACCAAGA-----GTCT TCACCAAA---------TGCTACTGCCAAGA-CCCAAACTTGCCAGCTCCAGG--------------AACTTTGAGAAGT -AAATATTGGCTCCTTGTAAGCTACCCAATCGGTGCTGTTTTGTTATCAGAGTCCAAATGGACTGAGAGA---AGACATG CACAGCATAAAATCTGGCAATAATGCAAGGATTCAC-GTGAAGGGTACAAAATACAGCTTTATTACCTGCACACTATTTA ACTGCAATATA-GA-------------------------------ATTCCATA-ATAAAAACTCCCAGTTAAATTGGTCT TTAGAATAGTGGTTCTCC---AGTGGGAGCC---CAACCTCTATGAAATGGAAACATAG--CTCTCTCTCACT--AAAGA GTGGTC >Sorex_araneus GATCTC-GCTCCCAATCATGCGCTGTAGGCAAAGCCAGTGTTGTTACACCTGCTGCAA-CAGCTGGCAAAACTAAAGCAT GTCCCGGTGACTGGACAGAGTCAACCTAACG-CCTTAAATATCTGCAA----CACCCCCCCCTCAAGGCATGGCTCTTTC T-ATGGAAGA--TTTTGCTAATGAGTCTCATTTTTTCTCTTCA-TCGTCTCTTAAGGAAC-ATATTCCAAA--TGACTTT GCTAA----AGTCATATTAAAACAGAGT-CAGAGCTTTAAAGAATCACA-TCCAGGCATGCGGTAGCTGCATT------T GTCTCCGGTACATCATTCTGGTGGACACTTCCGCCT-AAGGAGCGCTAAAC---ACACATTCACACTGTGAAACTTGCCA CCACACGCGTACAGACTCA-CCATGAAGGAGACCACCCAAGGAAGCTTTACT---GCCAATGTGCTAATTAAGAGGAATA TATTGTTCCAT-ACAAAAATTTTAATACTAATTGGTCTTTTTA--TGCAGCTCTTCTGAGGGAAAC---TACCATGATCT AACTGTT-TTTGCTTACTGACTC-----AGCTGATATACTAGAA----TCCTAAGGTCCAGTGTGATGGCATTAGGA--- -----CTTTGGAGA---GCTCAGGTCTGGAGCACAGAATTCTCATTAACAGA--TTAGTGTTCTTAT-AAAAGAGACCCC AGTGGA-------TGCCCCTCCCACC-TGAGAAGACACTTTGAGA----AAGCACTGTTTACGATCCCTGCA----GCCT ----CGATGAACAAATCTGCCAGAGCTATCATTCTAGACTTCTCAGCCCCCAGACGAGATAAAAAAAAAAAATGAAAAAC CAAATGTATCTTGTTTATAATCTAGCCAATCTGTGTTATTTTGTTCAAACAGCCCAAACAGATTGAGG-----GGACATG AACATTACAAAACCTGGCATAAACTCAAGAATTTGTTCTG--AGATGCAA--------TTTACTGACTACACTCTGGTTG ATTGGGATATA-TA-------------------------------ATTTCATAGAAAAAAATTCCATCTCAAATTGATCT TTAGAATGGTGGTTCTTTTAGTACAAGAAGC---CATATACTGGGAAACTAAGGTACAG--CTCTCCTCTAGCTG----- -TGGTG >Myotis_myotis ACCCCT-GCTGTAAAGCATGCACTGTAGGCAATGTCATTACTGTCACACCTGCTGCAACCAGCTGGAAAAACTGAGG-GT GTCCC-CTGACCAGGCAAAATCAACCCGACA-CCTTGAACATCTGAAAGC--TAC--------CAAGACATAGCCATTTC TTCAGGTAGG--TTTTTCCAGTGGAGCT-ACATCTACTCCCAA-TGCT------AACAGG-AGCTGCCAAGCCTGACTCT CCTAAAGACAGCAGTGTAAAAGGGAAGT-CAGAGCCTTAACGAGTCACA-TCCAGCCACAAGACAATAGAACT-GC---C ATCTT--GTGCCTCATTCTGGTGGGCATTTCTGCCT-AAGG-------AGC---AC----------TCTAAAATCAGACA CAA---ACTCAAGGATTCC-CTGTGCGGGGTACAC---AGTGGAGCTTTACT---GCCTGTGCACTGGTTAACTGGAATG TATCATTCCATAATAA------------AGACTGGACTTTAGAATGATGGTTCTTCAGTGGGAACC-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------CAGCCATGCTGATACTAAAGCAAGG--------------------- -TGGCC >Rousettus_aegyptiacus GCTCTC-ACTCTAAAACATGCACTGTCGGCAATGTCATTGTGGTTACACCTGCTGCAATCAGCTGGCAAAACCAAAGTGT GTTCC-CTGACCAGGCAAAGTCAACCCAATG-CTTCAGACATCTGCAAGC--TAC--------CAAGTCATTGCTATTTA TTCAGGTAGA--TTTTGCCAATGGAGCT-ACCTTTTCACACAG-TCAT------AACAGTAATATGGACCACGCAACTCT CCTAA----AGCAGTGTTAAAATAGAGT-AAGAGCCTTAGTGAGTCGCA-TGAGGCCATGAGGCAACAGCACT-AT---C GTCTC--GTGCATCATTCTGGTGTACAGTTCTGCCT-AAGGAGCTCTAAGT---GTACATTAACCCTATAAAATCTGGCA AAA---ACTCAAGGATTCA-CTGTGTAGGGTACAA---AATGGACCTTTACT---GCCAACATCCTGGTTAATTGGAATA TATAGTTCTATAATAAAAATTTCAAGTAAAATTGGTCTTCAGAATGGTGGTTCTGCAGTGGGAACC-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------CAACCACCATGACACTGAAGCATAGGTCTCTCCTTTATCTGGAAAA CTGATC >Homo_sapiens GCTTGC-ACTCCAAAGCATGCACTGTGGGTAATGCCATTACTGGTACACCTGCTCCAACCAGCTGGCAAAACTGAAGTGT GTCTT-TTGACTCAGCAAAGTCAACCCAATGCCCCCAGACAGCTGAAAGC--TAC--------CAAAACATTGATATTTG TGAAGGAAGA--TTTTGCTAATGGATCT-ACATTTTCTCATAA-TCAT------AATAGC-ATATTTCAAACACGACTCT CCCAT----AGCAGTGC-----TAGAAT-AAGAGTCTTAACGAGTCACA-TCAGGCCATGAGGCAACAGCACT-AC---T GTCTT--GGGTATCATTCTGGTGCACATTTCTGCCT-AAGGAGCTCTGAGC---ATACATTAACACTATAAAATCTGGCA CAG---ACTCAAAGATTCA-CTGTGAAGGGTACAA---AATGGAGCTTTACT---GTCTATGGGCCGATTAAGTGGAATA TATAATTCCATAATAAAAATGCCAAGTCAAATTGGTCTTCGGAATGGCAATTCTTTTGTGGAAACC-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------CAACTGTTATGAAACTAAAGTACAG--CTCTCCTCTCTCTGAAGAA GGGGTC Dog79_LINE >L1MA9_3END -------------------------------------------------------------------------------- --CAGAGAGTAGAATGGTGGTTGCCAGGGGCTGGGG----GGTGGGGGAAATGGGGAGATGTTGGTCAAAGGGTACAAAG TTTCAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGTACAGCATGGTGACTATAGTTAAT---------------- ----AATACTGTATTGTATACTTGAAATTTGCTAA--------------GAGAGTAGATCTTAAGTGTTCTCACCACAC- -ACAAAAAAATGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTA TATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAA------------- --------------------------------------------------------- >Canis_familiaris TTT-------TTCTAATATCATAAAGCAACA---GGTACCTAT-------GGGAGGTTTT----AGTATTTATTTCCTA- --TAGAGAACAGACTGGTGGTTACAAGAAGCAGGCATGGGAGCAGTCGAAATGGGTAAA-GGGAGTCAAAAGATACAAGC TTCCAGTGCT--AAAATAAATACATCATGGAGATGTA-----CAGCATGATGACTATAGTTGTT---------------- ----ACTACTGTACTGCCTATTTGAAGATTGGTAA--------------GAAAGAAAATCTTAAAAGTTCTCATCTCAAG -GAAAAAAATT-------GTATGTGGTGACAG--ATGTTAATTTGACTTATTGTGGTGATCATTTGTTAATATATACAAA TAGTGAATCATTATATTGTACATCTGAAGCTAATGTAA-TATTGTATGTCAATTATATGTCGATAAAAA---CAAATT-T ACTTCTTA---ACTTTTATCCTGTTTGCAGTTTTAACT-AGCATATGCTATATTTGT >Felis_catus TTTTTGGATATGAGCACTCCATAAAGCAACAATGCATACATAT-------GGGAGGTTTT----AGTATTGATTTTCTA- --CAGAGAACTGACTGGTGGTTACCAGAGGCAGGGGTGGGAGCGGGCAAAATGGGTGAA-GGGGGCCAAAAGGCACAAAC TTCCAGTTAT--AAAATAAATACATCATGGGGATGTAATGTGCAGTGCGATGACCATAGTCGTT---------------- ----AATACCGTACTGCATATTTGAAAGTTGCTAA--------------GAGAGTACATCTTACAAGTTCTCATGACACG -AAAAAAAATTTGTAACCATATAGGGTGACAG--ATGTTAACCAGACTTATTGTAGTGATTGTTTCTCACTATGTACAAA TAACGAATCATGCTATTGTACACCTGAAACTAATATAA-TGTTGTATGTCAACTTTATCTCCATAAAAA---CAAATT-T ACTTCCTA---ACTTCTGTACTATTTGCAGTTTTAATG-AGCATTCACTATTTTTGT >Manis_javanica TTTTGGGATATTAAAACATCATAAGGCAATATAGACTATATAT-------GGGGAATTTT----AATATATATTTCCTA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------ACTTCTATCCTGTTTACAATCTTAATT-AGTATACACCTT--TTGT >Sus_scrofa CTTCTGGATATTAGAGCATC-TAAAGCAATACAGAGTATATACAT-----GGAAGGTTTT----AATTTTTACTTCCTA- --TAGAGCACAGATTTATGGTTGCCAGAGGTAGAGG-----GTGGGTGAAATGGGTGAA-GGAAG-----------AAAC TTCAACTAA---AAACTAAACAAGTCTTGGGAATATAATGTACAGCATGGCAACTATAGTTAATCACACCGTATTGTC-- -AAAAACACCATAATGCATATTTAAAAGGTCCCAATAAATCTTAAAGGTTAGAATAGATCTTAGAAGTTCTCATCACAAG AAAAAAAAAATTGTAGCCATATCAGGTGACAG--ACGTTAACTAGACTTATTGTG---ATCATTTCTCAAAATACACAAA CATGGAATCAT---GTTGTATACCTGAAAC-----TAA-TGTTACACGTCAATTACACCTCAATAAAAA---AAAATTGT ATTTCCTA---ACTTCCATCCTGTTTGCAATTTTAACTAAGTATATGCTATTATAAT >Bos_taurus TTTTTGGATATTAGACCATCATAAAGCTGTATAGGGTATATACAA-----GGGAGGTTTG----AACATGTATTTTCTA- --CAGAGAACCGGTTGCAGGTTACCAGAGGTGAGAG-----GTGGGCAGAATGAGTGAA-GGGGGTCGAAAGGTACAAAC TTCCAGTTA-------TAAACAAGTCATGGGGGTGTAATGTACAGCATGGCAGCTATAGTTAATAATAGTGCATTGTCTA AAAAAATACTGTATTGCATATTTAAAAGGTGCTAA--------------GAGAATAAAATTTAAAAGTACTCATCACAAG -AAACATTTTTTGTAGCTATGTGTGGTGACAG--ATGTTAACTAGAATTATTGTG---ACCATTTCTCAGTATATACAAA TATGGGATCGT---GTGGTACACCTGAAACCAATATAA-TGTTGCCTGTCAACTGCACCTCAATTAA-----AAAACTTT ATTTCCTA---ACTTCCATCCTGTTTGCAGTTTTAACTAGGTGTATGTTATTTATGT >Equus_caballus ATTTTGGATTTTAGAATATGATAAAGCAACACAGAGTATATAT-------GGGAGGTTTT----CATATTTATTTCCTA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------ACTTCCATCCTGTTTGCAGTTTTAACC-AGCATATGCTATTTTTGT >Ceratotherium_simum ACTTTGGATATGAGAAT-TGATAAAGCAACATAGAGTATATAC-------GGGAGGTTTT----AATACTTATTTCCTA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------ACTTCCATCCTGTTTGCAGTTTTAGCT-AGCATATGCTATTTTTGT >Myotis_myotis TTGGAGAATATTAAAACATCGTAAAGCAATGTGG------------------------TT----TATATTTATTTCCTA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------ACTTCCATTCTGTTTGCAAT-TTAACT-AGCATATGCTATTTTTCT >Rousettus_aegyptiacus TTTTTGAATATTAAAACATCATAAAATGATATCAAGTATATGTGTGTGGGGGGGGGGGGT----GATATTTATTTCCTA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------ACTTCCATCCTGTTTGGAATTTTAACT-AGCATATACTGTTTTTGT >Condylura_cristata TTT---GGTAGTCGAAGATCATAAAGCAACACAGTGCCCACAG-------GGGAGGCATC----AATGTCTATTCCCTA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------ACATTAATCCTGTTTGTAGTTTTAACT-AGCGTATGATATTTTTCT >Erinaceus_europaeus TCCTACACTGCTAGACTATCATAAA-CAACATGGAGTCTACAT-------GGGAGGCTTTA---AATATTTACTCCCTG- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------ACATTCATCCTGTTTGCAATTTTAACT-AGTATATGTGATGTATTT >Heterocephalus_glaber CTTTTGGATATTGAAATATAATAAAGAAATACAGA-------------------GGCT------AACA-----TTCCTA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------ACTTCCATCCTATTTGCAGTTTTAACC-AGCATTTGCTATTTTTAT Dog80_LINE >L1MA9_ ----------------------------------------------------------------------TAAAAAAGAA GGAAATCCTGCCAT---TTGTGACAACATGGATGAACCTGGAGGACATTATGCTAAGTGAAATAAGCCAGGCACAGAAAG ACAAATACTGCATGATCTC-ACTTATATGTGGAATCTAAAAAAGTCAAAC---------TCATAGAAGCAGAGAGTAGAA TGGTGGTTGCCAGGGGC------TGGGGG-GTGGGGGAAATGGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATG CAGGATGAATAAG------------------------------------------------------------------- --------------------------------TTCTGGAGATC---TAATGTACAGCATGGTGACTATAGTTAATAATAC TGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCACCACACAC---AAAAAAATGGTAACTATGT GAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACA CCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAAT----AAA------------------------------- ------------------------------------------------------------- >Canis_familiaris CATTCAGG--ATATGCATTTTTGTGTGAGGCTTATGATCACACATCTGTAATT---AAAAATTAAAAGAATAAAC----A AGAAATTTTGCTGT---TTACGACAACATAGATGGACTTTGAGGGCAT-ATGCTACGTGAAATAATTCAGACAGAGAAAG GCAAATACTGTATCATCTT-ACTTATATGTGAAATCTAAAACAAACAAAT---------TCATAGATACAGAGAACA-CT TGGTGGTTGCCAGAGGTGGGATTTGGGGA-GGGGGTGA----GGCGGAGGGAGC-GAGAAGGAACAAACTTTCAGTTAT- -AAAGTAACTAAG------------------------------------------------------------------- --------------------------------TCATAGGGATGTAATAATGTACAACATGGAGATGATGGTTAATATGAT TTTCCTACATGTATGAGAGTTGGTAAGAGAGCAAATCTTAAAAGTTCTCAACAGAGGTTAAAAAAAAATTGTGTGACTGT ATGGTGATAC--ATGTTAACTAGGTGTATTGTGGTGATCATTTTGCAGCATATACAAATGTCAAATCATTATGTTGTACA CATGAAACTAGCATAA-TGTTACATGTCGACGATACCTCAAT----AAAAAAAATAAACAGGATAGACTGGTTCTCCTTA T---ACAGAATACTT-TGTCTCTCTTATTAAGGCAGCATATAAATGGTCATTATGAACACA >Felis_catus CATTCAGA--ACAAGCATTTTTGTGTAAGGTTTATAACCATATATGTATAATT---AAAAATTAAGAGAATAAACAAGAG TGAAATCTTTCCAT---TTGTGACAACACGGATGGATGTTGAAGGCATTGTGCTAAGTGAAGT--------CAGAGGAAG ACAGATACTGTATTATCTT-ACTTACATGTGAAATCTAAAACAAACAAAC-----AAGTTCATAGATACAGAGAATAGAC TGGTGGTTGCCAGAGGTGGGGATTGGGGA-GTAGACCAAATAGGTGTAGGGAGCAAAAAAAGTGCAAACTTCCAGTTAT- -AAAATAACTAAG------------------------------------------------------------------- --------------------------------TCATAGGGGTG---TAATGTACAACATGGAGACTATAGTTAATAAGAC TGTGCCGCATATCTGAAAGTTGGTAAGAGACTGAGTTTTAAAAGTTCTCATCACAAGTAAAAAAAATTCTGTGACTATGT ATGCTGATGA--ATGTTAACTAGATGTATTGTGGTGACCATTTTGCAATATATACAAATGTTGAATCATTATGCTGTACC CCCGAAACTAATATAA-TGTTATATGTCAATGAGACCTCAGT----AAAAAA--TAAACAAAATAGACTTGTTCTCCTTA C---ACAGAATACTT-TATTTCTATTATTAAGTCAGCATATAAGTGGTGATTATGAACATA >Manis_pentadactyla CATTCAGA--AGATGCATTTTTGTATGAGTTTTATAATCATATACATGTAATA---AAAAATTAAAGGAATAAA-AAGAA TGCTATCTTGCCAT---TTGGGACAACATGGATGGACCTTGAGGGCTTTATGCTAAATGAAAT---------AAACAAAG ACAAACACTGTATGA-----TCTTATATGTGAAATCTAAAACAAACAAACAAACAAAGCTCACAGATACAAAGAGCAGAT TGCTAGATGCCAGAGGGAAAGGGTGGGGA-GTGGTCGAAATGGGTAAAGGGAAT-CAAAAGGTGCAAACTTCCAGTTAC- -TAAATAAATAAG------------------------------------------------------------------- --------------------------------TCATGG-GATG---CAATATACAGCATGAAGACTATAGTGAATAATAA CGTTTTGCATATTTGAAAGTTGCTAAG-GATTAAATTGTAAAAGTTCTCATCATAAGT-GAAAAAATGCTGTAACTATGT ATGGTGATGG--ATGTTAAGTAGATTTATTGTGGTGATCATTTTGCAATATATACAAATATTCAATCAT--TGTTATATG CCTGAAACTAATATAA-TGTT-TATGTCAATTATACATCAATT---AAAAAGGTGAATCAAAATAGACTTTTTTTTTCCA A---ACAACATACTT-TGTCTCTCTTATCAAGTAACCATCTTAGTACTGATTTTGAACACA >Sus_scrofa CATTCAGA--ATAGGCATTTTTGTGAG-GGCTTATAATCACATACATGTAATT---AAAAATTAAAGGCAT--ACAAAAA TGAAATCTTGTCAT---TTGCAATGACATGCGTGGACCTTGAGGGCACTATGGTAAGTGAAATAAGTCAGACAGAGAAAG GAGAACACTTTATGAT-TTAACTTATATGTGGAATCTGAAACAAACAAACAGTCCAGGTTCATAGATACAGAAAAC---- -GGTAGTTCCTTGATGTGGGGTGTGGG---GTGGACAAAATGGGCAAAGGTAAT-CAAAATGTACAAACTTCCAATTAT- -AAAATAAATG--------------------------------------------------------------------- --------------------------------TCACAAATATA---TAAAGGATAGCATGGTGACTATATTTAATACTAC TGTATCAAATATCTGAAAGTTGCTAGGAGAATAAATCTTAAAACCTCTCATCACAAATCAAAAAAAAAGTCTAACTATGA ATGGAGATAG--ATGTTCACTAGACTTATTATGGTGAGTATTTTGCAATA-ATACAAATATTGGATCATTATGTTTTATA CTTGAAATTAATATAA-TGCTGTGTATCTATAATAC-----T----TCAATACAAAATTAAAGTAGACTCATTTTCTCTG T---ACAAAATGCTT-TGTCTGTGTTATCAAGTCATTGTGTTGGTGGTGATCATGAACACA >Bos_taurus CATTCAGA--ATATGCATTTCTGTGAGAGGTTTATAATTACATACATGTAACT---AAAATTTACAAGAATGAA-AAGAA TGAAATCTTGTCAT---TTGCAGTGACATGGATGGACCTTGAGGGTATTCTGCTAAGTGAAATAAGTCAGACAAGGAAAG ----ATACCATATGATCTCAACTTAAATGTGGAATCTAAAACAAACAAAAA----AATTTCATACATACAGTGAATA-GT TGGAGGTTGCCTGAGGTGGGGTGTAGGCATGTAGACCAAATGGGTGGAGGTGAT-CAAAATGTACAAACTTCCAGTTAT- -AAAGTAAATAAGTTCCCTGGTGGCTCAGATGGTAAAAAATCTGCCTGCAATGTTTGTGTGTGTTAGGCTGATTCTTTAC CACTAGTGCCACCTAGGAAGCCACTTTCACTTTCATGAATATC---TATTGCAAAGCATGGCTACTATAATTAATAATAC TGTATTGTATATGTGAAAGTTGCTAAGAGAGTAAATATTAAGACTTCTCATCACACACACAGAAGAATCAGTAACTGTGT ATGATGACAG--ATGTTAACTAGACTTATTGTGGTGATCGTTTTGCAATATATACAAATACTGAATTATTATATTTTAAA CCTGAAACTAATATAA-TGATATATGTCAATTATACCTCAAT----AAAA-ATTAAATTAAAATAGACTATTTCTCTCTA T---ACAAAATATTT---AATCTGTTATCCAGTTATTGTGTTAGTGGTGATTGTGAATGTA >Equus_caballus TATTCAGA--ATGCACAGTTTTGTGTGAGGCTTATAATCATGTATGTGTAATT---AAAAATTAAA----TTCTAATAGA CTTATTCTCTCTAT------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----ACAGAATACTT-----TTTGTTATCAAGTCGTCATATTAGCGGTAATTATGAACACA >Ceratotherium_simum CATTCAGA--ATATACATTTTTGTGTGAGGCTTATAATCACATACACATAATT---AAAAATTAAA----TTAAAATATA CTTGTTCTCTCTAT------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----GCAAAATACTT-TGTCTCTGTTATCAAGTCACTATATTAGTGGTAATTATGAACATA >Myotis_myotis CATTCAGA--AAATGCATTTTTGTGTGAGGCTTATAATCACATACATATAATT---AAAAATTACA----TTAAAAAACA CTGGCTCTTTCTAT------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----GCATAATATTT-TGTCTCTGTTACCAAG------TATATGTGGCAATTATGAACACA >Pteropus_vampyrus CATTCAGA--AAATGCATTTTTGTGTGAGGCTTATAATCACATATGTATAATT---AAAAATTAGA----TTAAAATAGA CTGATTCTCTCTAT------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----ACAAAATATTTTTGTCTCTGTTATCAAGCCACTGTAAAAGTGGTGATTGTGAACACA >Condylura_cristata CTTTGAGAATATGG--AGTTTTGTGTGAGGCTTATACTCACATATACATAATT---AAAAATTAAA----TT-AAATAGA CTGGTTCTCTCTAT------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----ACAAAATGTTT-------TGTTATCAAATCACTACATTAGTGGTGATTATGAACACA >Sorex_araneus TATTCAGAATATGTACATTTGTGTGTGAGGCTTATAATCACATGCATATAATT---AAAAATTAAG----TTAAAATAGA CTAATTCTCTTAAT------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----GTGGAATTCAC-TGTCCTTTATAACAAGTCACTATATTAGCATTGATACTGAACACA >Homo_sapiens CATTCAGA--ATACACATTTT-GTGTGAGGCTTATAATTACATACATATAATT---TAAAATGAAA-----TGAAATAGA CTGGTTCCCTCTAT------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----ACAAAGTCCTT-TGTCTCTGTTATCAAGTCACTGTATTAGTGGTGATTATGAACACA Dog84_LINE >L1_CARN7_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------ATATAGTCAATAATATTGTANTAACNTTGTATGGTGACAGATGGTAACTAGACTT-ATTGTGGTGATCACTT CAC--------AATGTATACAAATGTCGAATCACTATGTTGTACACCTGAAACTAATATAACATTGTATGTCAATTATAC TCAAATAAA----------------------------------------------------------------------- ---------- >Canis_familiaris ATT--TGCAAG-AAATAGGCCACATATA----TCATAAGGGGACCCT---TTTC---AAAAAT-TAGAAACT-CA----- -----------------------------------AATATTTGAAATTTGTTGAGAG--TCAACCTTAAAAAGTCCCCAC CAC-----ATGAA---AAAAAAATTTTTGTAATTATGTATAGTGATGGATGTTAACTAGACTT-ACTGTGGTGATCATTT TGC--------AATAAATACAAATATCAAATCACTGTGATATATGC-TGAAACTAATACAATGTCTTAAGTCAATTAAAC CTCAATAAC------AAAT-TAGAAGCAATT----CAATCTTCCTTCATTCTCCATCAACTAGT----AATACCAAATCT TCAGTGCTTA >Felis_catus ATT--CACAAG-AAATATTAAACATATAATA-TCATAATGGCACCCA---TTTC---AAAAAC-TAGAGACT-CT----- -CAGCATGGTGATTATAGTTAAAAATACTGTATTGCATATTTGAAAGTTGGTAAGAG---AGA-CTT-AAAAGTCCTCAT CAC-----ATGAA---AAATAAATTGT---AATTATGTATGGTGATGGATGTTAACTAGACTT-ATTGAGGTAATCATTT TGC--------AGTATATGCAAATACCAAATCACTATGTTATATACCTGAAACTAATATAATGCCTTATGTGAATTATAC GTCAATAACA---AAAAAT-TAGAAACAATT----CAATCTTGCTTCATTCCCAGTCAACTAGT----AAGATCAAATCT TCAGTGCTTA >Manis_javanica ATT--CCCAGG-AAATAGTAAACATA-AACA-TCTCAAGGTCACCCA---TTTC---AAAAAT-TATAG----CT---GT ACAG-ATGGTGACTATAGTTAATAATACTGTACTGCACATTTAAAAGTTGCTAAGAGAATAGATCTT-AAAAGTCTTCAT CAC-------------AGAAAAATATTCTGTATTATGTATGGTGATGGATGTTAACTACACTT-ATTGTGGTGA-CATTT TGC--------AACATATACACCTATCGAATTATTATGTTATACACTTGACACCAGTAAAACTTGTCAA----------- -------------AAAAAA-TTGAAACAACT----CAATCTTCCTGCATTCCTGGACAACTAGTAATAAATATCACATCT TCATTGTTTA >Sus_scrofa ATC--AACAAG-AAATAGTAAACATACA----TTACAAGGTCACCCA---TTTC---AAAAAT-TAGAAACA-AT---AA ATAGCATGGTGACTAT--TTAATACTACAGTATTACAAATTTGGAAGTTGCTAAGAGACTAGATCTT-AAAAGTCCTTAC CAT-----AAGAA---AAAACAATTTT--TAACCATGTATGATGATGAACATTAACTAGACTT-CATGTGTTGATCACTT TGCTATATATATATATATATAAATACTGAATTATAATAATACATACCTAAAACTAATGTGTCTATTTACCT--------- ---------------CAAT-AAAAAAAAATTA---CAATATTG-TTCTTTCCTGGCCAACTACT----AATAGCAAATCT TCAATGCTTA >Bos_taurus CTT--CATAGG-AAATAGTAAACATATAATA-TCACAAGGTCACTCA---TTCC---CAAAAT-TAGAGAC---T---AT ACAGCGTGGTAACTATAGTTAATAATACTGTATTGCAAGCTGGAAAGTTGCTAATAGAGTAGATCTT-AAAAGTTCTCAT CACGAGAAATAGA---AAAAAAATTGTTTTAACTATGTATGGTGACAAATGTTAACTGGACTTAACTGTAGTGATCATTT TGC-------------------------TATTATTATGTTGTACATGTGAAGCTAATATAATG---TATGCCAAATATAC CTCAATAA-----AAAAAT-CAGAAACAACT----CAATCTTGCTTCATTCCTGTCCAATGAAT----AATATCAAATCT TCAATGCTTA >Equus_caballus ATT--CACAGG-AAACAGTAAACATGTCACGTTCGCAAGGTCACCCA---TTTC---AAAGAT-GAGAAACA-CC----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------CAATCTTGCTTCACTCCTGGCCGACCAGC----AACAGCACACCT TCAGTGCTTC >Ceratotherium_simum ATT--CACAGG-AAACAGTAAATATATAACATTCACAAGGTCACCCA---TTTC---AAAAAT-TAGAAACAACT----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------CAATCTTGCTTCATTTGTGGCCAACTAGT----AATATCAGATCT TCAAAGCTTC >Myotis_myotis ATT--CACAAGAAAATAGTAAACATATAACA-TCACAAGGTCACTCA---TTTC---AAAAAT-TTGAAATGACT----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------TAATCTTGTTTTATTCCCATACAAGCAGT----AATATCAAACTC TCAATGCTAA >Rousettus_aegyptiacus ACT--CACAGG-AAATTGTAAATGTATAACA-TCTCAAGGTCATTCA---TTTC---AAAAAT-TAGAAAAAACC----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------TAATCTTGCTTCATTCCCAGCCAAGAAGT----AACATCAAACCC TCAATGCTTA >Condylura_cristata AAT--CTCAGG-AAACAGTAAACATAGTA---TCATAAGGTCAACTTTTTTTGC---AAAAAGAGAAAAATAACT----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------TAATCTTGCTTCATTCTTGGTCAGCGAGT----AATATCAAACCT TCCATGCTTA >Erinaceus_europaeus GCTAAAACAGT-AAACAGTAAATATAACA---ATACAAGGCAACCTG---TCTC---AAAAAT-TATAAACAACG----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------CAATCTTGATTTATTTCTGGTCTTGCAGA----AATATCAAAGCT ACAGTGCCTA >Homo_sapiens ACT--CATAGG-AAATGGTAAACATATAATA-TCACCAAGTCTCCCT---TTTT---GAAAAT-TAGAAATAACT----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------CAATCATGCTCCATTCCTGGTCAACCAAG----AATTTTAAATTT ATAATGCTTG Dog90_LINE >L1MA9_3END -----------------------------------------------------------------------------CAT TTCACAATGTATA-CGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCA ATAAAGCTGGAAAAA----------------------------------------------------------------- -------------------------------------------------------------------------------- ------- >Canis_familiaris TTCCAAATGGCATGATTTCCTAGCAGAG-AAACTTGCATGTCAGTTCTTGGGTAT---AAA-CTGTATTCCCAT------ -----AATATACATTGTAAATCAAAGCATCACACTGTA---CTTAAACTTACATAG-TGATGTAGGTCAATTATGTCTCA ATTAAACTGGGAAAAATAAATAAGTAG--ATAACAAGGCATTAATAGACAGAGAGGCAAAAAAA---------------- ---------AAAACTGTCTTCCAAT---TTCTCAGCTATGGAATGCAGAT-------AAAAATTAACTCAC-ATGGCCAC TGCGAAG >Ailuropoda_melanoleuca TTCCAAATGGCATGACTTCCTAGCAGAG-AAACCTGCATTTAAGTTCTTGGGTAT---AAA-CTGTCTTCCCAC------ -----AATATACATTGTAAATCAAAGCATCACACTGCACACCTTAAACTTACACAG-TGATGTATCTCAGTTATTTTTCG ATTGAACTGGAAAAAACAGATAAGTGG--ATAATAAGGCACTGATAG----AGAGGCAAAAAAAAAGAAAAAGAAAAGAA AAAAAA---GAACCTGTCTTCCAAT---TCCTCAGCTATGAAATACAGAT-------AAAAATTAACTCAC-ATGGCCAC TGCAAAG >Manis_pentadactyla TTCCGAATGACATGATTTTCTGGCAGAG-AAAATTGAATTCTAATTCTTGGGTAA---AAAGCTGTACTCCCAC------ -----AATATACATTGCAAATCAAGCCATCATGCTATGGGGCTTCGACTCATAGAG-TCAGGTATGTCGCTTATTTCTCA GTAAAACAGGGAAA-------AAATAA--GTAGTAAAGCAATAATATAAGGAAAGGCAAAAAAAG--------------- ---------AGATCTGTACCCCAAT---TCCTCAGCTATAAAATGGAGAT-------AAAAATTAACTCAC-GTGGCCAT TGTGATA >Sus_scrofa TGCTCAATGATGTAATTTCCCAGCAGAGAAAAA--GAATTTCAATTCTTGGATAG---AAAGCTATATTCCTAC------ -----AAGACA---TGTAAATCAAATCATCATACTGTATGCCTTAAATTTAGACAG-TGATGT--GGCAATTATTTCTCA GTAAAACTTGATCA-----ATAAATAA--AGACTAAGGCATTAATATCGAGAAAGGTAA--------------------- ---------AAAATACTGTTTCAAT---TCCTCAGCTATAAAATGAAGAT--------AAAATCAACTCACAATCACCAT TGCAAAG >Bos_taurus TTCCAAATGGCATGATTTCCTGGCAGAG-AAAAGTGCATTTCAAGTCTTGGGTAG---AATACGGTATTCCTAT------ -----AATACA---TGTAAATCAAATCATTGTGCTGTATGCCTGAAACTTACACAG-TGATGTATGTCAATTATTTCTTG GTAAAGCTGGATAA-----ATAAATAAATATATTGAGGCATTAATACAGAAAAAGACAA--------------------- ---------AAAAACACATTTCAAT---TCCTCAGCACTAAAATGGAGAT-------AAAAATAAGCTCATAATGGTCAT TGTGAAG >Equus_caballus TTCCAAATGGCGTAATTTCCTGGCAGAGAAAAACCGCATTTCAATTCTTGGGTAT------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------AAAACTGTATTCCAAT---TCCTCAGCTATACAATGGAGAT-------AAAAATTAACTCAC-ATGGCCAT TGTGTGG >Ceratotherium_simum TTCCAAATGGCATAATTTCCTGGCAGAG-AAAACTGCATTTCAATTCTTGAGTAT------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------AAAACTGCATTCCAAT---TCCTCAGCTATAAAACGGAGAT-------AAAAATTAACTCAC-ATGGCCAT TGTCTAG >Myotis_myotis TTTTAAATG-TGTAATTTATTGGCAGGG-AAAATTGTATTTCCATTGTTGGGTAT------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------AAAACTGTATGCCAAT---TTCTCAGCTATAAAAGGGAGGT-------GAAAAGTAATTTAC-ACGGCCAC TGCGAAG >Rousettus_aegyptiacus TTCCA--------GATTTCCTGTCAGGG-GAAATTGCATTTCAATTCCTGGTCAT------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------AAAACCATAACCCAAT---TAATCGGCTAAAAAACAGACAT-------AAAAATTAATTTAC-ATGGCCAC CAGAAAG >Condylura_cristata TTTCAGATGACACAATTTCCTGGCAGG--AAAACTGCATT-----TCTTGGTTAT------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------AAAACTGTATTCCAAT---CCGTCCGCTATGAAATGGAGAC-------AAAAATTCATTTCC-CTGGTGGT TGT-TAG >Sorex_araneus TTTCAAATGGCATCACCATCCAAGTGGG-AAAACACTGTTTCAATTCGTAGATAC------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------AAATCAAT-TTCCAAT---TCTTTAGTTGTAAAATGAGGACCAAAAAAAAAAAAAAATGTCCCACGGCCAT TGCAAAA >Homo_sapiens TTCCAAGTGGCATACTTTCCTGGCAAGA-AAAACTGCATTTTAATTCTTGGGTGT------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------AAAACTATATTCCAAT---TCCTCAGCTATAAAATGGAAAT-------AAAAATTAATTAAC-ATGGTCAT TGTGAAG Dog92_LINE >L1_CARN7_3END -------------------------------------------------------------------------------A GTTATAAAATAAATAAGTCATGGGGATGTAATGTACAGCATGG----NGAATATAGTCAATAATATTGT----------- -------------------------------------------------------------------------------- ------ANTAACNTTGTATGGTGACAGATG-------------------------------------------------- --GTAACTAGACTTATTGTGGTGATCACTTCACAATGTATACAAATGTCGAATCACTATGTTGTACACCTGAAACTAATA TAACATTGTATGTCAATTAT------------------------------------------------------------ -------------------------------------------------------------------------------- --------------------------------------------------------------------------ACTCAA ATAAAAAAA----------------------------------------------------------------------- ------------ >Canis_familiaris CCAATACTCTCTTGGTCTC--CTTCATTCATCTGTGAAATGAAG--AGTATGATGGGG---A-AAAGGGAAGTGAG---- ------------ACAAGTCATGGGGATAT--------------------------------------------CATATTT GAAAGTTGCTAAGATAGTTGATCTTAAGAGTTCTCATCACAAATATATATATATATATATATGTTATATATAGTTTTATA TATATATGTGAC--TGTATGGTGGCAGACAAATATATATATATATATATATGTATTTATATAAATAACTGTATGGTGGTT GACTGTCTAGACGTTTTACTGTGATCATTTCGCAGTATCGACATGTGTTGAGTTATTATGCTGTACACCTCAAAGTAATA TAATG-TATGTGTCAAGTAC------------------------------------------------------------ -------------------------------------------------------------------------------- --------------------------------------------------------------------------ACCTCA ATTCT-------AAAAGAGGAAGTCAG---AATGG----CTGTTTTTGTGCAGAACCACTTACATGCTAT--GGTGCTTT CAGGTTGAGTGG >Felis_catus CTAATCCTTCCTTTGTCTC-ACTTCATTCATCTGTAAAATGAGA--AGAATGATGGTA---AGAAGAGGAAGTGTG---- ------------ATATTTC-TGGGGATATAATGCACAGCATGGTGACTGACTATAGTTAATAATACTGTGTTGCATATTT AAAAGTTGCTGAGAGAGTAGATCTTAAAAGTTCTCATGAGAAAAAAACGT------------------------------ ------TGTCAC--TGTATAGTGACAGACATAT-------------------------------------TATTATAAGT GACTA--TATATTTATTATGTTGATCATTTTGCAATACATACAAATATTGAATCATTATATTGTATACCTGAAACTAATA TAAC--CATATCTCAATTTTTTTAAGTTTATTTATTTATTTTGAGAGAGAGAGAGAGAGAAAAGTGTGAGTGGGGGAGGC AGAGAGAGAGAGAGAGAGAGAGAGAGAGAATCCCAAGCAGGCTCCATACTGTCAGCACAGACCCTGATGCTGGACTCCAT CTCACAAACCATGAGATCATGACCTGAGCCGAAGTCAAGAGTCGGATGCTTAACCGACTGAGCCATCCAGGCGCTCCTCA ATTTTAA-----ACAGAAGGAAGTGAG---AATGG----CCAGCGCTGTACAAAACCACCTGCATGCTGTACGGTGTTTT CAGGTTCAACGG >Sus_scrofa CTCCTCCT-TCTTTGTCTC-ATTTCCTTCTTCTACAAAATGAGG--AGAGTGATGCTC---A-CAAATGAAGTGAG---- ------------ACACGTCATAGGGATGTGATGTAGAGCATGA----TG---------------ACTGTACAGCATGTTT GAAAGTTGCTAAAAGAGTAGAATTTGAGCGTTCTCATCATAAGAAAAAAT------------------------------ ------TGTAACCATGTATGGTGAAAGATA-------------------------------------------------- --TTAGCTAGACCTGTTCTGGTGATCATACTGAATTACATGCAAATACTGAATTGTTATATCGTACAGCTGAAACTAATA TCATGTTATATGTCAACAAT------------------------------------------------------------ -------------------------------------------------------------------------------- --------------------------------------------------------------------------ACCT-A ATTTTAA-----AAAATGGGAAGTGAG---GATGG----CCAGTTTGGTGCAAAATCATTTGTGTGCTAT--GGTGCTTT CAGGTTCTGTGG >Bos_taurus CCAATTCTCCTTTTGTCCC-ACTTACTTTATCTATAAAATGAAA------TGATGGTC---ACAAAGGAATATGGG---- ------------ATAAGTCACGGAGATGTGTTGTACAGCAGGA----TGGCTATAATAAGTAATACTGTACAGTGTATTT GAAAGTTGCTCAGAAAGTCTATCTTAA---TTCTCATCACAAGAAAAAAA------------------------------ ------TATAACACTGTATAGTTATAGGTA-------------------------------------------------- --TTAGATAGACTTACTATGATGATCATTTTGCAATATATACAAATATTGAATTGT-------TACACCTAAAATTAATG T-----TCTATGTCTATTTT------------------------------------------------------------ -------------------------------------------------------------------------------- --------------------------------------------------------------------------ACCTTA ATTTTA------TAAAAGGGAGGTGAG---GATGG----CTAGTTTTGTGCAAAATCACTTGCATGCTTT--GGTTCTTT CAGATTCAGTGG >Equus_caballus CTAAGCCTCTCTCTGTCTC-GCTTCTTTTACCTGTAAAATGAGAACAGAATGATGGTC---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------AAAAAGAGAAGTGGG---GATGG----CCAGTTATTTGCAAAACCACTTGCATGTCAT--GGAGTTTT CAGGGTCAATAG >Ceratotherium_simum CTAAACCTCTCTCTGTCTC-ACTTCCTTCATGTGTAAAATGAGGACAGAATGATGATC---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------AAAAAGAGAAGCGAG---GATGG----CCAGTTATGTGCAAAACCACTTGCATGCTCT--GGTGCTTT CAGCTTCCATAG >Myotis_myotis CTGATTCTGTCT--GTCTC-ACTTCCTTCATCTATAAAATGAGGACAGAATGATGGTC---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------AAAAACAGGAGTGAG---GACAG----GCAGTTTTACGTACAACCGCCTGCATGCTAT--GGTGCTTT CAAGTTTAATGG >Rousettus_aegyptiacus CTAAACATCTCTCTGTCTC-ACTTCCTTCATCTACAAATTGAGGATAGAATGATGGTT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------C--AAAAGGAGTGAG---GATGGCTGGCCAGTTTTGTGTAAAACCACATACATGCTAT--GGTGCTTT CAGGTTTAATTG >Condylura_cristata GTGATCCT--CTGTGTCTC-ACTTCCTTCCTCTGTAAAGCGAGG--AGAATAACGGTC---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------CAAAGAGGAAGTCAG---AAGAG----TCCATTTTGTGTGGAAC-ACCT-----------GGC-CTTT GAGGATCAGCAG >Uropsilus_gracilis CT-ATCCTATCTCAGTTTCAACTTCCCTCCTCTGT-AAATGAGAA-----AATTGGTC---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------CAAAAAGGAAGTGAG---AGAG-----CCAGTTTTGTGCAAAACCACT------------GGTGCTTT CAGGCTGAAACG >Homo_sapiens CTAAACCT--CTGAGCCTT-ACTTCTTTCATCTATTAAATAAAGACATAAAGATGATC---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------AGAAAGGGAGGGGTG---CGTGC----ATAGTTTTGTGCAAAACCACTTGCATGCTAT--GGTGATTA CAGATTTCATAA Dog93_LINE >L1MA9_3END ------------------------------------------------------------------------------AA GAGATATCTGCACTCCCATGTTCATTGCAGCATTATTCACAATAGCCAAGATATGGAANCAACCTAAGTGTCCATCGACG GAT----------------------------------GAATGGATAAAGAAAATGTG----------------------- ------GTATATATACACAATGGAATATTATTCAGCCTTAAAAAAGAAGGAAATCCTGCCATTTGTGACAACATGGATGA ACCTGGAGGACATTATGCTAAGTGAAATAAGCCAGGCACAGAAAGACAAATACTGCATGAT-CTCACTTATATGTGGAAT CTAAAAAAGTCAAACTCATAGAAGCAGAGAGTAGAATGGTGGTTGCCAGGGGCTGGGGGGTGGGGGAAATGGGGAGATGT TGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGTACAGCATGGTGACTATAGTTA ATAATACTGTATT------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -GTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCACCACACACA-------------------------- ---------AAAAA----ATGGTA--------ACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCAT TTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAA T------AAAGCTGGAAAAA------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------- >Canis_familiaris CCTCTTATGTACTGTA-------TTTGAAATTTGGTTTGGTAAGCTATTAGCTCTT-----AAAACAAT----------- -------------------GTTCATTGCAGCATTACTCACAATAGCCAAGATGTGGAAACATCCTAAGTTCCCATTATTA TATACATATTTATATACTTACATGTATAAATATAAATAATTGTATACATAATATATA----------------------- --ATATATAAATATATATAATGGAATATTATTCAACCAGGAGAAAGAAATAAA-CCTGCCATTTGAGACAACCTGGGTGA ACATTGATGTCATTATGCTAAGTACAATAAGTCAGACAGAGAAAGACAAACACTGTATGTTATTTACTTTTATGCAGAAT CTAAAAAAGCTGAACTTGTAGAAAAAGAGAGTAGGATGGAGGTAACCAGGGGCTGGAGGGTGAAGGAACTGGGGAGATGT T-----AAGAGTATAAACTTGCAACTTGT--AGATATATAGGTTCTGGAGATCTAATGAACAGCATAGTGATTATAGTCA ACAATACTATATC------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -ATAAACTTTGAAGTTGCTAAGAGATGAGATCTTAGTTGTTCTCACCACAAAAA-------------------------- ---------AGAA-----ATGGGG--------ATCTTGTGATGTGGTAGAGATATTAGCTATTGCTATGATGGTAATCAC T--GCAGTATATAAATGTATTAAA--ATCATGTTGTACATTTCAAACATCCTCCG-TGTTACACGTCAATTACATTTCAA TTTTTAAAAGGAGGGAAAAAAAAGAATGGATGTGTTAGTCATTCTGT-AATGCATAAAAAAACAAAAAAATCTAA----- ------------------------------ACGATTTTCAAAGCCCTGAT------------------------------ ----------------------------------------------------------------ATTCCTCAAAATCACA TGGTAACAGA >Felis_catus CCTCCTTAATACTACC-------TTTG------------GTGAACTATTAGATTTTT---GAAAACAATTTGCCT----- -----GTCTGCATGCCCACGTTCTTTGCAGCATTACTCACAATAGCTAAGATAAGGAAACAACCTAAGTGTCCATCATTA TAT----------------------------------------------------------------------------- -----------------TAATAGAATAGTATTCAGCCATGAGAAAGAAATAAA-CCTGTCATTGGAGACAACATGGATGA ACGTTGAAGTCATTGTGCTAAGTGACACAAGTCAGA----GAAAAGCAAACACTGTATGTTATTTACTTTTATGTGGGAT CTAAAGAAGCTGAACTCATAGAAAC--AGAGTAGAATGGTGGTTACCAGGGGTTGGAGGGTGAAGGAACTGGGGAAATGT T-----AAGGGTATAAACTTGCAACTGAT--AGATAAATAGGTTCTGGAGATCTAATGAACAACATAGTGATTATAGTCA ATAATACTGTATTATAAACTTCAAAGGGGCGCCTGGGTGGCTCAGTCGGTTGAGCGTCCAACTTCAGCTCAGGTCACGAT CTCACTGTCTGTGAGTTTGAGCCCCGTGTCAGGCTCTGTGCTGACAGCTCAGAGCCTGGAGCCTGTTTCAGATTCTGTGT CTCCCTCTGTCTCTGCCCCTCCCCCACTCATGCTCTGCCTCTCTCTCTCTGTCAAAAATAAATAAACATTAAAAAAAAAT AATAAACTTCAAAGTTGCTAAGAGATGAGATCTTAATTGTTCTTACCACAAAAA-------------------------- ---------AAAAAAAAGATGGGA--------ATTATGTGATATGGTAGAGGTATTGGCTAACACTATGATAGTAATCAT T--GCAGTATACAAATGTATCCAATCAACACATTGTATACTTTAA-----------TGTTACATGTCAATTCTTCCTTAA TTTTAAAAAAGGGGGAAAAAAGAGAATGGATGTGATAGTCATTCTAT-GATGCATAAAAGACAAA--------------- ------------------------------ACAATTTGCAAAAACCTGAT------------------------------ ----------------------------------------------------------------ATTCTTAAAAATCACA TAGTAACAGA >Manis_pentadactyla CCTCCTTAATTCTGTA-------TTTGAAATTTGGTTTTGTAAGCTATTAGCTATTT---AAAAACCATTTGCAT----- -----GTATGCATTCACATGTTTATTATGGTATTATACACAATAGCCAAGATATGGAA-TAACTTAAGTGTTCATTGATG GAT----------------------------------GAATGGATAAAGGTCTAGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGTGAATATTATTCATCCATGAGAAGGAAGGAAA-CCTGCCACTTGTGACAACGTGGGTGG ACTTTGAGGGTATTATGCTAAATGAGATAAGTTAGATAAGGAAAGACAAATACTGTATGAT-CTCACTTTTGTGTGGAAT CTAAGATAGCTGAACTTGTAGAAACAGAGAGTAGAATGGTGGTTACCAGGGGCTGGAGGATAGAGGAGCTGGGGAGATGT T-GTTAAAGGACACAAACTTGCAACCAGT--ATATAAATAGGTTCTGGAGATCTGAGGCTTAGCATAGTTTTCATAGTCA ACAGGAGTGTACT------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -ATAAAGTTTCAAGTTGCTAAGA---CAGATCTTAATTGTTCTCACCACAAACA-------------------------- ---------GGAA-----GTGGGA--------A-TATGTGACATGGCAGAGGTGTCAGCTAATGCTATGGTGGTAATCAT ATAACAATATGATATGGCACCAAATCAACACATTGTGCACCTTAAACTTATGCAA-TGTTAAATGTCAATTATACCTCAA TTTT-AAAAAAAGGAAAAAAAGTGAATAGATGTCATAGTCATTCTAC-AATGAATAAAAACAAAAAAAACAAACACAG-- ------AAAAAATCCCTGCAT---TTAGGCACTACCTGAGAAGGCCTGAT------------------------------ ----------------------------------------------------------------ATTCTTCATAGTCACA TAGTAACAGA >Sus_scrofa TGTTCTTAATTATGGAT------TTTAAATTTTGGCTTTGTGAGCTATCAGCTCTTT---AAAAACAATTTGCAT----- -----GTTTGTCCTCTCA-GTGCACTGCATCATTACTTGCAATAGCCAAGACAGGGAAACAACTTAAGTGCCCATCAATG GAT--------------------------------------GTATGAAGAAGATGTG-------------------GTAT ACACACACACATGCACACAATGGAAGATTATTCAGTCACAAGAAAGAAGAAAA-CCTGCCATTTGGAAAAACATGGATGG ACACTGAGGGCATTATGCTAAGTGAGAGACGTCAGACAGCGAAAGACAAATATTGTATGAT-TTCACTTTTATGTAGAAT CTAAAAAAGCCAAACTCATAGAAAC----AATAGGATGGTGATTTCCAGGGGATAGAGG-TGGTGGAACTGGGAAGATAC T-GCTTAAGGGTAAAAATTTCCAACTAAT--GGATAAACAGGTTCTGGAGATCCAATGCACCACGTGGTGAATATAGTCA ATAATACTGTATTATAAACTTTG--------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------TTTTTATTATAGTTGATTTACAATGTTGTGCCAACTGTAT TGTAAACTTTAAAGTTGCTAAGAGAAGAGATT----ATGTTTTCAATGCACAAA-------------------------- ---------AATGA----ATAAAA--------GTTATGTGATTTAATAGAGATGTT------------------------ -----------TAAATGTACCCAA--------------------------------TGTCGTATGTCAATTATGTTTCAA T---AGAAAAAGGGAAAAGAAGAGAATAGACGTGATAGTCATTCTGC-AATGCATAAAAAACAAAATAAACAAAATGAAA CTA---ACAAAAAATCTGAAT---TTAGGCAGTACTTGAGAAAGTCCAATTGGAGTTTCTGCTGTGGTACAGTAGGTTAA GGATCAGGCATTGCCATAGCGACCAAAAAAAAAAAAAAAAAAAAGAAGAAAAAAAAAAGGTCTGATCTTCTTTGATCACA TAGTAACAGA >Bos_taurus TCTTTTTAATGCTGTA-------TTTGAAATTTGGTTTTGTGAGCTAATAGTTGTTT---AAAAGCAATTTGCAT----- -----GGTTGTACTCCCATGTTTATTGCAACATTATTCACAATGGCCAAGATATGGAAACAACCTAAGTGTCCATCAGCA GAT----------------------------------------------------------------------------- --------------GTCAGATGGAAT--TATTCAGCCATGAGAAAGAAG--AACCCTTCCATTTGGGACAACATGGATGG ACATTGAGTAAACTATGTTGAGTGACATAAGTCAGAGAGAGAAAGATGAATTCTGTATGAT-CTCACTTTTCTGTGGGTT CTAAAAAAGTTGAACTCATAGAAAC----AGCAGTATAGTGATTTCCAGGGGCAGGGGAGTTAGGGAACTGGGGAGATGT T-GCTGAAGGATGAAAACTTGCAACTAGT--CAGTAAATAGGTTCTGGAGATTCAATGCACAACATAGTGATTATAGTCA ACAATACCGTGCT------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -CTAAACTTCAAAGCTGCTAAGA-------TCTTAATCATTTTCCCTGCATACACATGCACACACACACACACACACACA CACACACACACACACACAATGAGAATTCGATCATTTTGTTATTTAATAGAGATTACCACCAAGGTTATGGTGGTAATCAT ATTGCAATGTATAAATGTATTAAGCCAACACACTTCATACCTTAAAAGCACCCAA-TACTATATGTCAATTATTTTTCAA T----AGAAAAGAGAGAACAAGAGAATGGAGGTGGTAGTCACTCTATAAATGTATAAACAAAAACCA------------- ------AAAAAC------TAT---TTAGGCATTACTTG---------AAT------------------------------ ----------------------------------------------------------------GATCTGCATAATCATG TGGTAACAGA >Equus_caballus CCTCCTTACTGCTGTA-------TTTGAAATTTGGTTTTGTGAGCTATTAGCTTTTT----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------GAAAACAATCTGCAT---TTAGGCACTACTTGAAAAGACCCAAT------------------------------ ----------------------------------------------------------------ATTCTTCATAATCACA TAGTGATAGA >Ceratotherium_simum CCTCCTTAATGCTACA-------TTTGAAATTTGGTTTTGAGAGCTATTAGCTCTTT----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------AAAAACAATCTGCAT---TTGGGCACCACTTGAAAAGGCCCAAT------------------------------ ----------------------------------------------------------------ATTCTTCATAATCACA TAATGACAGA >Myotis_myotis CTCTCTTAATGCTATAGTTAGTGTCTTAAATTTGATTTTGTGAGCTACTGGCTCTTT----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------AAAAACAATCTGCAT---TTAGGTACTACTGGAAAAGGCCCAAC------------------------------ ----------------------------------------------------------------AGTCTTCATAATGACA TAGTGACAGA >Pteropus_vampyrus CTTCCTTAATGCTATA-------TTTGAAATTTAATT--ATGAGCTATTAGCTCTTT----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------AAAAACTATCTGCAT---TTAGGCACTACTTGAAAAGGCCCAAT------------------------------ ----------------------------------------------------------------ATTCTTCATAATCACA TAGTGACAGA >Condylura_cristata CTT---AAGTGTTATA-------TTTAATTTTTGATTTTGTTAACTAT----TCTTT----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------AAAGACAATCAGCAT---TTAGACACTAATTGAAAA--CTCAAT------------------------------ ----------------------------------------------------------------AATC-TCATAACCCCC TAGTAAGAGA >Uropsilus_gracilis TCTCCTGAATGTTATA-------TTTAATTTTTGCTTT-GTGAACTATTAGTTCTTT----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------AAAAACAATCTGCAT---GTAGACACTAATGGAAAA-CCTTAAT------------------------------ ----------------------------------------------------------------AATCTTTATAATCACC TAATAATGGA >Homo_sapiens CTTTCTTAATGCTGTA-------TTTGAAATTAGGTTTTGTGAATTATCAGCTCTTT----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------AAAAACAATTTGCAT---TTAGGCACTGCTTGAAATGGTCCAGT------------------------------ ----------------------------------------------------------------TTTCTTTATAATTACA TAGTGACAGA Dog103_LINE >L1_CARN7_3END -------------------------------------------------------------------------------- ------CTTATTGTGGTGATCACTTCACAATGTATACAAATGTCGAATCACTATGTTGTACACCTGAAAC--TAATATAA CATTGTATGTCAATTATACTCAAATAAAAAAA------------------------------------------------ --------------------------------------- >Canis_familiaris AACATT---TTAGGTGAATAAAGAAATTTGCTCTTTC-ACATATTGGTAATTAATATAC---ATAAGCT------GTTGT CCT-----------GATGATCATTTTGCAATACATATAATTATCAATTCACTATGTTGTACACCTGAAGC--TAATATAG CGTTATATGTCAATTATACACCAATTTA------GGAAAAA---ATAAGTCATTACCTT---CTAAAAGTAGAG---CAA GCAGAAAATAGATTCCCTAATAGACTTAAGAATCATGTG >Felis_catus AACATT---TTAGGTGAGTAAAGAAATCTGCTCTTTC-ACATATTGGTAATTCACATAC---ATAAGCT------GTTGC TCT-----------GGTGATTGCTTTGCGATACATATAAATATCAATTCACTGTGTTCCAAATCTGAAA----------- -GTTACATGTCAGTTACAACTCAATTAGAAAAAAAAAAAAA---AACAATCACTGCCTT---CAAAAAACAGAG---CAA GCAGAAAATGGATGCCCTACTGGGCTTTGGAATTGCGTC >Manis_pentadactyla AACCTT---TTAGATGAATAAGGTAATCTGCTATTTC-CCACAC------------------------------------ --------------GATGATCACATCACAATATAT--AGTTATCAAATCATCACGATGTACACCTGAAA----------- -ATAGTATGTCAATTATGCTTCAAT---------------A---AAAAGTCATTGCCCT---CAAAAAATAAGG---CAA GTAAAAAATGGATTCCATAAAGGGTTTTGAAAATCTGTG >Sus_scrofa CAAATTCACTTAGGTGAGTAAAGGAATCTGCTCTTTC-ACATGTTGGTAATTAATGTAC---ACAAGTC------ATTGT CCT-----------GGTGATTATTTCACAATATTTACAAATATCAAATCATTATGTTGTCCACCTGGAAT--TAATACAA TGTTACATAACAATTAAATCTCAA----------------A---AAAAGTCATTTCCCT---CAAAAAAAAAAAGATAAG GAAGAAAATGGGTTTCATAGTGAGTTTAGGAAATTCGCG >Bos_taurus CACATT---TTAGGTGAA-AAAGGAATCTGCTATTTC-ATACACTGTTAATTACTGTAC---AGAAATC------ACTGC CCT-----------GGTAACCATTTCACTATATAT-------------------GTTGTACACCTGAAGCTATAATATAA TGATATAGGGCAATTATATCTTAA---------AAAAAAAA---AGAAGTCAATGCCCT---CAAAAAATAAGA---CAA GCAGAGAAGGTATTCAATAGTGGATTTAGGAAACTCGCG >Equus_caballus AACATT---TTAGGTAAGTAAAGGAATCTGCTATTTC-ATGCCTTGGTAGTTAATGTAC---AGAAGCC------TTTGT CCT----------------------------------------------------------------------------- --------------------------------------------------------------CAAAACATAGGA---CAA GCAGAAAATGGATTCCATAATGGACTTAGAAAGTTTGTG >Ceratotherium_simum AACATT---TAAGGTAAATAAAGGAATCTGCTATTTC-ATACATTGGTAATTAATGTAC---AGAAGTC------TTTGT CCT----------------------------------------------------------------------------- --------------------------------------------------------------CAAAAAATAGGA---CAA GCAGAAAATAGATTCCGTAATGGATTTAGGAAATTTGTG >Myotis_myotis GACATT---TTAAGTAAATAAAGGAATGTGGTATTCC-ACACATTGGTAGTTCATGTAA---AGAAGTT------ATTG- CCT----------------------------------------------------------------------------- --------------------------------------------------------------T-AAAAATGAGA---CAA GCAGAGCATGGATTCCACAGTGGTTTTAGGAAATTTGTG >Rousettus_aegyptiacus AACATT---TTGGATAAATAAAGGAATCTGCTATTTC-ACACATTGGTAATTGATGTAG---AGAGGTC------ATTCC ATT----------------------------------------------------------------------------- --------------------------------------------------------------TAAAAAACAAGA---CAA GTAGGGAACAGATTCCACAGTG--TCTAAGAAATGTGTG >Condylura_cristata GACTTT---GGAGGTGAATAAAGGAAGACTCCGTTCC-ACACACGGGTGATTCACACAG---CCA--CC------GCCAT CCT----------------------------------------------------------------------------- --------------------------------------------------------------CAAAGGACAGG----CAG GCAGAATGTGGACCCCC----ACACTCAGCAATCTGGGG >Sorex_araneus AATGTT---TTAAGTGAATAAAGAGATC--ATCTTTCAATATACTG----CTAATATAT---AAAAGTTACTATATTTTC ACT----------------------------------------------------------------------------- --------------------------------------------------------------CTTAGAACAAAA---CAG --------TGGATTCTATAATGAATTTGGAACATCTATA >Homo_sapiens AACATT---TTAGGTGACTAAAGGAATCTGCTGTTTC-ACACATTGGTATTTAATGTAC---AGATGTT------GTTGC CTT----------------------------------------------------------------------------- --------------------------------------------------------------AAAAAAAAAGTG---TAA GCTAAAAATAGGTCCCATAATGGGTTTAGAAAATGCGTG Dog120_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------TAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTT AAGTGTTCTCACCACACACAAAAAA------------------------------ATGGTAACTATGTGAGGTGATGGAT ATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATAT ACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA------------------------------------- -------------------------------------------------- >U6 -------------------------------------------------------------------------------- --GTGCTCGCTTCGGCAGCACATATACTAAAATTGGAACGATACAGAGAAGATTAGCATGGCCCCTGCGCAAGGATGACA CGCAAATTCGTGAAGCGTTCCATATTTTT--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------- >Canis_familiaris GAAGGAGGGTGATT--TT-TAAAAAGGT-TTCAGGACTTCAAATGGCAATATCTACC----AAA---AAATAAGGCTTG- --GTGCTTGCTCCAGCAGCACATATATTAAAACTCTAGTGATACAGAGAAGATTAGCACAGCCCCTGTATAAGGATGACT TTCAAATTCATAAAGTATTCCACA--TTT------------TTTATGATATAGATCAAAATT-TCAAGAAAGTAGATCCT GAGAGTTTTCATCACAAGG------------ATATTTTTTTTCCTTTTCTGTTTTATTGTATCTACATGAGATAATGG-- CTGCTAACTAAGATGAAAGTGACAATCATTTCACAATA--AACACAAGTCAAACCATTATGTTGTATACCTTAAACTTAC AC-AGCGATACATGACAATTATACCTCAATAAAACTGGGG-T----AGGA-AGGCTTG---GATATAATTATCCATA-CA GGCTTT---------------TCTTCTAGTCTAATATTATATCTTAAGAA >Felis_catus GAAGGAAATAACTTAAA--AAAAAAGAT-TTCAGGGCTTCAAATACCATCATCTATT-TTAAAA---AAGTAAAGCTCG- --GTGCTTGTTCCCACAGCACATACACTAAAATCGGAATGATAAAG---AGATCAGCAGGACCCATGCAGAAGGATGGCT TGCAAATTCGTGAGGCATTCCACA--TTT------------TGTATGATATAGATGAAAATT-TTAAGAAAGTGGATCCT --GAGTTCTCATCATAAGG---------------ACTTTTTTTTTCTTTTTTTAAATTGTATCTATATGAGATCATGG-- CTGCTGACTAAACTGTCAGCGTTAATCATCTCACAGTG--AACACAAGTGAGGCCATTAAGTTGTATACCTTAAACTTAT AC-GGTGGTATGTGACAATAATACCTCAGTAAAACCAGGGGT----AGAAAAGTCTTG---GATATAATTATCCTTA-GA GGCTCT---------------TCATC--------TATTATATCTTAGGAA >Manis_pentadactyla GAAGAAAGAACAATGA------AAAAAC-TTCAGGGCTTCAAAAGCCTGTGTATATTAAAAAAA---AAATAAGGCTTT- --GTGCTGGCTTCAGCAGCACATATACTAAAATTGGAACAATACAGAGAAGTTTAGAATGAACCCTGCACAAGGATGACT TGTGAATTCACGAAGCATTTCATA-TTTT------------TGTATGATGTACANNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNNNNNNNNN---NNNNNNNNNNNNNNNN-NN NNNNNN---------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Equus_caballus GAAGGAAAAGCAATGA---AAATAAAGT-TTTAGAGCTTCAAATGCTTCTATCTATT----AAA---AAATAAGTCTTT- --GTGCTCGCATCATCAGCACATATGCTAAACTTAGAATGATACAGAGAAGATGATCATGGTCCCTGCACAAGGATGACT GGCAAATTCATGAAGTGTCCCATA--TTT------------TGTATGATATATGTGAAAGTTGTTAAGAGACTAGATCCT AAGAGTTGTCATCACATGG---AAAATTTGTTTTCTTTTCTCTCTTTTTCTTTTTATTGTATCTATATGAGATGATGG-- ATGCTAACTAAACTTATTGTCGTAATCACTTCACACTA--AATCTAAGTCAAACCATTGTACTGTACACCTGAAACTAAT AC-AGTGATGTATGTCATATGTATCTCAATAAA-CTGGGGA-----AAAAAAGGCTTG---GATTAAATTATCCTTA-GC GTCTCT---------------TCTTCTAATCTAATATTAAATTTT-TGAA >Ceratotherium_simum GAAGGAAAAGCAATGA---AAAAAA-GT-TTCAGGGCTTCAAAGGCCTACATCTATC----AAA---AAATAAGTCTTG- --GTGCTTGTTTCAGTAGCACATATACTAAAATTAGAATCATACAGAGAAGATTAGCATGGTCCCTGCGTAAGGATGACT CACAAATTCGTGG-----CCCATA--TTT------------TTTATGATATATATGAAAGTTGTTAAGAGAGTAGATCCT AAGAGTTGTCATCACAAGGAAAAAAATTTTTTTTCTTTGTTTGCTTTTCATTTTTATTGTATCTATATGAGATGATGG-- ATGCTAACTAAACTTATTGTGGTAATCATGTTACAACG--TATGTAAGTCAAACCATTATGCTGTATATCCTAAACTTAT AC-AATGATGTATGGCAATTATATCTCAATTAAACCAGGG------AAAA-AAGCTTG---GATTAAATTATTCTTA-CA GTCTCT---------------TCTTCTAGTCTAATATTATATTTTATGAA >Sus_scrofa GAAGGAAAAGCAATGATT-AAAAAAA---TTCAGGGCTTTGAATGCCTACATCTATT----AAA---ATACAAAGCTTG- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------GATTAAATTACCCTTA-GA GCCTCT---------------TCTTCTATTTAAATATTAACTCTTAAGAA >Tursiops_truncatus GAAGGAAAAGCAATGATT-AAAAAAAGT-TTCAGGGCTTCAAATGCCAATATCTATT----AAA---ATACAAGGTTTG- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------GATTAAATTATTCTTA-GA GCCTCT---------------TCTTCTATTCAAATATTAACTCTTAGGAA >Myotis_myotis GAAAAAAAGGCATTGATT-AAGAAAAGT-TTCAGGGCTTTAAGTGCCCATATCTATT----AAA---ATATAAGGCTTC- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------CATTAAATTATCCTTA-GA GTAT-T---------------TCTTCTGGACAAACAT-AAATCTTAGGAA >Rousettus_aegyptiacus GAAAGAAAAGTGATGATTAAAAAAAAGT-TTCAGGGCTTCAACTGCCCATATCTATT----AAA---ATACAAGGCTTG- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------GATTAAATTATCTTTA-GT GTCTTC---------------TCTTCTTATCTAACAT-AAATCTTAGGAA >Condylura_cristata GAAGACAATCCAGTGATT--AAAAATGT-TTCAGGGCTTCAAATGTTTATATT--------AAA---ATGCAAGACCTA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------AATTAAATTATTCTTAAGA GTCTCT---------------TTTTCTAGTCTATTACTAAGTCTCAGGAA >Erinaceus_europaeus GAAAGAAAAG---TGATG---ATAAAATATTTTAGGATTTAAAGTCTTATC-----------TA---TTATAAG-TTAA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------GATTTGTATATTCTTTAGA TTTTCTATTACATTCAGAGTCTCTCTTAGTTTAATAGTAAATCTTAAGAA >Homo_sapiens GAAGCAAAAGCAATGATG---ATAAAGT-TTTGAGGCTTCAAATCTCTATGTCTG------GAA-------GAG-CTTG- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------GATTAAATTATCCTTA-GT GTCTCC---------------TCTAC---TCTAATATTAAATCTTAGAAT Dog128_LINE >L1MAB_EC_ -------------------------------------------------------------------GAACTCATACAAC TCAATAGCAAAAA---AACCAAATAATCCAATTAAAAAATGGGCAGAGGATCTGAATAGACATTTTTCCAAAGAAGACAT ACAAATGGCCAACAGGTACATGAAAAGGTGCTCAACATCACTAATCA-TCAGGGAAATGCAAATCAAAACCACAATGAGA TATCACCTCACACCTGTTAGAATGGCTATTATCAAAAAGACAAGAGATAACAAGTGTTGGCGAGGATGTGGAGAAAAGGG AACCCTTGTGCACTGTTGGTGGGAATGTAAATTGGTGCAGCCACTATGGAAAACAGTATGGAGGTTCCTCAAAAAATTAA AAATAG-AACTACCATATGATCCAGCAATCCCACTTCTGGGTATATATCCTAAAGGAAATGAAATCACTAATCTTGAAGA GATATCTGCACTCCCATGTTCATTGCAGCATTATTCACAATAGCCAAG----AYATGGAAACAACCTAAGTGTCCATTGA TGGATGAATGGATAAAGAAAATGTG---------------------------GTATATATATACAATGGAATATTATTCA GCCATA-------------AAAAAGAAAAGAAGGAAATCCTGCCATTTGTGACAACATGGATGGAACCTTGAGGGCATTA TGCTAAGTGAAATAAGTCAGACAGAGAAAGACAAATACTGCATGATCTCACTTATATGTGGAATCTAAAAAAA------- --AAAAACCAAACTCATAGAAACAGAGAATAGATTGGTGGTTGCCAGAGGCTGGGGGGTGGGGG------------AAAT AGGGAGAGGTTGGTCAAAGGGTACAAACTTTCAGTTATAAGATGAATAAGTTCTGGGGATGTAATGTACAGCATGGTGAC TATAGTTAATAATACTGTATTGTATATTTGAAAGTTGCTAAGAGAGTAGA-TCTTAAAAGTTCTCATCACAMAAACAAAA AAAAAATTTGTAACTATGTGAGGTGATGGATGTGTTAATTAACTTCATTGTGGTAATCATTTCACAA---TATATACATA TATCAAATCATTATGTTGTACACCTTAAACATAATACAATGTTATATGTCAATTATATCTCAATA----AAACTGAA--- AAAAAAAAA---------------------------------------------------------------- >Canis_familiaris TGGTGAAACTAAAGGGTAGTATTTTAAAGTTATGCACATGATAGTTTGTTA---AAAACTGTGA-----------ACAAC TCAGTAGCAAAAAGAATCCCAAACTGTTTGATTT-AAAATGGGCAAAATCTCTGAATAGACATTTTTCCAAAGAAGACAT A--GATAGCCAACAGATGTATGAAAGGATGTTCAGCATCTCTCATCA-TCAGAGAAATGCAAATCAAACCTACAATAAGA TATTACCTCACACCTGTTAGAATGACTCTTATCAAAAAGGCAAGA---AGTAAGTGTTAGTGAAG--------------G AACCCTTGTGCACTGTTGGTGGAAAT-TAAATTGGT------ACTATGGAAGACAGTGTGGAGGTTCCTCAGAAAGTTAA AAATAGTAACTATCCTATAATACAGCAATTGCACTTCCGAGTATTCGT-CTGAAGAAAATGAAAACACTAA-CTCAAAAA GATCTATGCACCCCCATGCTCATTACAGCAATTTTTACAATGGCCAAGATATATATG----------AAGTGTCTGTCCA TGGATAAATGGATAAAGAT-----------------------------GTGTATAGATGT-------------------- -------------------AAAAAAAAATGAATGCAGTCCTGTCATTTGTGGCAGCATGGATAGATT-TAGAGGATATTA TCCTATGTGAAACAAGTCAGACAGAAAAAGACAAATGCCACATGATTTCACTTATGTTTGGACTCTAAATAAA------A ACAAAAACCAAGCTCATAGATACAGAGAACAAATTGGTGGTTGTCAGAG----GAGGTT--GGGTGGGGGTAAGTGAAAT AGGTGAAAG-GATTCAAAAAGTACAAAATTCCAGGTATAAAATA----AGTCATAGGGATATAATGTTTAGCACAGTGAC TATAGTTAATAATACTGTATTGCATATGTGAAGGTTAGTAAGATAGTACAGTCTTAAAAGTTCTCATCACAA----GAAA AAAAATGTTGTAATTAC------TAACAAG--CATTAAGTAGACTTATTGTGGTAATCATTTTACAA---TATATACAAA TATCAAATCATTATGTTATACATCTGAAAC-TAATATAA---TGTATGTCAGTTATACCTCAGTT--AAAAACAAAA--- TAAAACTGTGAGC---CTT-GCTTATGTGGATACAATTTAAATA------AAATCATTATCCAGGGTGATTAA >Felis_catus TGGTGAAACTAAATAGTAGTATTTTAAAGTTATGCACATTATAGCTTGTTA---AAAAACTTGA-----------ACAAC TCAGTAGCAAAAACAATCCCAAATGATCTGATTTAAAAATGGGCAAAGGCTCTGAATAAACATTTTTCCAAAGAATACAT ACAGATGGCCAACAGACACATGAAAACAGGTTCAGCATCACTAATCA-TCAGGGAAATGCAAATCAAAATCACAATGAGA TATCACCTCACACCTGTTAGAATGACTCTTCTCAAAAAGATAAGA-------AGTATTGGTGAGGATGTGGGGAAAAGAG AAC-CTTGTGCACTGTTGGTAGAAAC-TAAACTGGTACAGCCACTCTGGAAAACAGTGTGGAGTTTCCTCAGAAAGTTAA AAATAGAAACCATCATATAATATAGCAGTTCCACTTCTGGATATTCAT-CCGAAGAAAATGAAGACACTAA-TTCAAAAA GATACATGCACCTCCATGCTCATTACGGCAGTTTTTACAGTAGCCAAGATGTATATGGAAATAGCCTAAGTATGCATCCA TAGATGAATGGGTAAAGAA-GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGAGAGGAGAATGAAGTCTTGCCATTTGAGACAACATGGATGGACC-TAGAGGGTGTTA AGCTAAGTTCAATAAGTCA----GAGAAAGACAAATGCCTTATGATCTCAC----AGGTGAAATCTAAATGAA------A ACAAAAACCAAACTCATAGATACAGACAACAAATTGGTGGCTGCCAGAGATTGGGGGGTAGGGGTGGAGATAGGTGAAAT TGGTAAAGG-GAGCCAAAAGGTAAAAAATTCCAGTTATAAAATA----AGTCAT-GAGATGTAACGTACAGCATGGTGAC TGTAGTTAGTAATACTATATTGCATATGTGAAAGTTGCTAAGAGAGTAAA-TCTTAAAAGTTCACATCACAA----GAAA AA----GTTGTAATTAT------TGACAAA--CATTAACTAGACTTCTTGTG---ATCATTTTACAG---TATATACAAA CATCAAATCATTATGTTGTACATCTAAAAC-TAATATAATGTTGTATGTCAGTTACACTTCAATT---AAAACAAAG--- CAAAACTGTGAGC---CTT-GCTTACAACGATGGGATGT-AATA------AAATCATTGCCCAAGGTGATTAA >Equus_caballus TGGTGACACTACATGATAGTGCTTTAAAATTATATGAATTATAGTTTTTTA---AAAACTATGA-----------ACAAC TCCATAACAAAAA------CAAGCAATCTGATTACAAAATGAGCAGAGGATCTGAATAGACATTTTTCCAAAGAAGACAT ACCGATGGCCAACAGGTGCATGAAAAGGTGTTGAGCATCACTAATCACCCAAAGATATGTAAATCAAAACCACAATGGGA TATCACTTCATGCCTGTTAGAAAGTCTTTTATCAAAAAGATAAGA---AG-AAGTGTTGGTAAGGGT-TGGAGAAAAGGG AGCTCTTGTGCACTGTTGTTGGGAATGTAAATTGGTGCAGCCATTATGGAAAACAGTGTGGAGCTTCCTCAAAAAGTTAA AACCAG-AACTACCATATGATCCAGCAATTCCACTTCTGGATATTTTT-CTGAAGAAAATGAAAACACTAA-CTCTAAAA GATATCTACACTCCCATTTTCATTGCAGCATTATTTCCAAGAGCCAAA----ACATGGAAACAACCTAAGTGTCCATCAA CGGATGAATGGTTGAAGAAAATGTG-----------------------GTGTATATATATATACAATGGAATATTATTCA TCCATA-------------A-----AAAAGAATGAAATCATGCCGTTTTTGACAACACAGATGGACC-TTGAGGGCATTA TGCTAAGTGAAATAAATCAGACAGAGAAAGACACATACCATATGATCTCACTTATATGTGGAATCTAAAACAAATAAACA AAATAAACCAAGCTCATAGATACAGAAAATAGATTAGGGGTTGCCAGAG-TCAGGGGTTAGAAGTGCTG---GGCAAAAT GGCTGAAGG-GGGTCA-AAGGTACAAACTTCCAGTTATAAAATAAGT-AGTCCTGGCGATGTAATGAACAGCATGGTGAC TATAGTTAATAATACTGTATTGCATATTTGGAAGTTGCTAAGAGAG--------TAAAAGTTCTCATTACAA----GAAA AAAA--TCTGTAGCTATGTATGGTGGTGGA--TGTTAACTAGACTTATTGTGGTGATCATTTCACAATACTATATACAAA TAGCTAATCATTTTGTTGTATACTTGAAAC-TAATATAGTGTTGTCTGTCAGTTATACCTCAATAGGAAAAAAGAAA--- AAAAACTATGACT---CTT-GCTTACAGGGATGGAATTT-AATAAATATTAAATCATTGCCCAGGGTGATTAG >Ceratotherium_simum TAGTAAAACTACATGATAGTATTTTAACTTTATACAAATGACGGTTTTTTA---AAAACTGTGA-----------ACAAC TCCATAGCAAAAA-----ACAAACAATCTGATTAAAAAATGAGCAGAGGATCTGAATAGACATTTTTCCAAAGAAGATAT ACAGATGGCCAACAGGTACATGAAAAGGTGTTCAGCATCACTAATCA-TCAAGGAAATGTAAATCAAGACCACAATGAGA TATCACCTCACGCCTGTTAGAATGACTTTTATCAAAAAGATGAGA---AATAAGTGCTGGCAAGGGTGTGGAGAAAAGGG AACTCTCATGCACTGCTGGAGGGAATGTAAATTGGTGCAGCCGCTATGGAAAACAGTATGGAGGTTCCCCAAAAAGTTAA AAACAG-AACTACCGTATGATCCAGCAAGTCCACTTCTGGGTATTTTT-GTGAAGAAAACGAAAACACTAA-CTCTGAAA GATATCTACACTCCCATGTTCATTGCAGCATTATTTACACTAGCCAAG----ACATGGAAACAACCTAAGTGTCCATCAG CGGATGAATGGATGAAGAAAATGTG-----------------------GTGTATATATAT--ACAATGGAATATTATTCA CCCATA-------------A-----AAAAGAATGAAATGGTGCCATTTGTGACAACATGGATGGACCTTTGAGGGCATTA TGCTAAGTGAAATACGTCAGATGGA-AAAGACAGATACCATATGATCTCACTTATATGTGGAATTTAAAACAAACAAA-C AGAAAAACCAAGCTCATAGATACAGAAAATAGATTGGTGGTTGCCAGAG-TCAGGGGTTGTGGGAGGTGA--GGCAAAAT GGGTGAAGG-GAGTCAGAAGGTACACACTTCCAGTTACAAAATAAATAAGTCATGGGAATGTGATGTACAGCATGGTGGC TATAGTTAATAATACTGCATTACATATTTGAAAGTTGCTAAGAGAGTATA-TGTTAAAAGTTCTCATCACAA----GAAA AAGA--------AAAATCTATGGTGATGGA--TGTTAACTAGACTTATAGTGGTGATCATTTCACAGTACTATATACAGA TAGCTAATCATTATGTTGTATACCTGAAAC-TAATATAG---TGTATGTCAATTATACCTC--------AAAAGAAA--- AAAAACTGTGACT---CTT-GCTTATAGGTATGGAATTT-AATAAATATTAAATCATTGCCCAGAGTGATTAA >Sus_scrofa TAGTGAAACTACAT-ACTA-CTTTAAAAATTTTGCAAATTGTAATTTGTTA----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -AAAAGTGTGAGC---CTT-GCATACAGGGATGGAATTT-AATA------AAATCATTGTCCAAGGTGATTAA >Bos_taurus TGGTAGAACTACATGATGGTACTTTAAAATTTTCCAAATTATCATTTGTTT----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -AAAACTGTGAGC---CTT-GCATAGAGGCATGGAATTT-CATG------AAATCATTACCCAGGGTG-CTAA >Myotis_lucifugus TGGTGAAACTATATGATAATATTTTAAAGTTATGCAAATTATAGTTTGTTG----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -AAAACTGTAAGT---CTT-ACTTACAGGGATGGGATTT-AATA------AAATTACCACCCAGAGTCATTAA >Rousettus_aegyptiacus TTGTGAAATGGTATGATAGTATTTTAAAGTTATGCAAATTATAGTTTAGTG----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -AAAACTGTGAGT---TTT-GCTAACTGGGATGGAATTT-ATCA------AAATCATCACCCAGAGTGATTAA >Condylura_cristata TGGTAAAACTGCAGGAT-ATATTTTGCAG----GCAACTTACAGTTTGTTA----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -AATACTGTGAGC---CTTTGCTGACAAGAGTAAAATGT-AATA------AAATCATTGCCTAGAATGATTAA >Solenodon_paradoxus NNNNNNNNNNNNNNNNNNNTATTTT----ACATGAAAATTTCAGTTTGTTA----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -AATACTATGAGC---CTT-GCTTATAGGGATGAACTTT-AATA-----AAAATAATTGCCTAGAGTGATTAA >Homo_sapiens TGGCAAAACTACAAAATAATATTTTAAGCTTATGAAAATTACAGTTTATTT----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- AAATATTTTCGGC---CTT-GCTTACAGGGATGTAATTT-AAT-------ACATCACTACCCAGGATGATTAA Dog131_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------TTTTTCCAGCTTTATTG-AGGTATAATTGACAAATAAAAAT TGTATATATTTAAGGTGTACAACGTGATGTTTTGATATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAA CATATCCATCACCTCACA--TAGTTAC--CATTTTTTTGTGTGTGGTGAGAA---------------------------- -------------------------------------------------------------------------------- ---------------------------------------------- >Canis_familiaris CAATGATAT-AAA---------------AATATCTTGAGGAGTA------GGCTCAGTAATTAATTAGCTAATTAATTTA TTTTTGTTGAGTAGAAGAGT---T-ATTTCATGGAAAGAAA---------TAGCAACACCAAGAGGTGTTAAATTGGATC AGCTGAAG---TTTGTATTTTCATGCCAA----------TTTTTCCAGTTTTATTGAAAAAAAAATTGACATAC-ATCAC TCCATAAGTTTAAGAAGTAGAGCATGATGGTTTGATTT--GCATATATTATGAAATGATTACCACA------CTA-GT-- --------TCAGCTAACAATCAGGAAATTCAGTTT--------------------ATCTTG-TCACTCATTAGG----AA AAAAAAATAGTCACAGATGTGGTAATAAAACAATTCTGTAGCA---TGTAGAAAATTAAAATTGTTCCTTTAAAATATAA AAAT-----ATCTGGCT-----------TGCAAATTTAATCTGAGA >Felis_catus TGAAGAGAC-AGA---------------AATATCTTGAGGAGTAG-----GGCTCTGTA-------AATTAATTAATTAA TTTTTGCCAAGTAGAAGAGT---TTATTTCATGAAAGAAAAAAAAAAAACCAGCAACACCAAGAGGTGTTAAATTGGATC AGGTAAAG---TTTATATTTTCATGTCATT---------TTTTTCCAGTTTTATGGAAAAAAAA--TAATGTAC-ATCAC TGTATAAGTTTAAGGAGCACAACATGATGGTTTGATTT--GCATATACCATGAAATGATTATGACA------CTAGGT-- --------TCAGCCAACATTCAGTAAATTCATTTT--------------------AACCTG-TCACTCATTAGGTAAAAA GAAAAAACAGCTGCAGATGTGGTAATAAAACAGTTCTGTAAAA---TCTA------TAAAATTGTTCCTTTAAAACATAA AAAT-----ATGTGGCT-----------TGCAAATTTAGTCTGAGA >Manis_pentadactyla NNNNNNNNNNNNN---------------NNNNNNNNNNNNNNNN------NNNNNNNTA-------AACCAACTCATTTA TTTATGCCAAGGAGAAGACT---TAATTACATGAAAA----------------GAACAGCAACAAGTATTAAATGAGATC AGCTCAAG---TTTGTATTTGTC----------------ATTTTCCAGTTTTATTG-AAAAATCATTGTCATAC-ATTAC TGTGTAAGTTTAAGATGTAGAGCTTGATGATTTGACTT--ACATA-----------AATGACCACC------ATAGGT-- --------TCAGCTAACACTCAGTGAGTTTATGTT--------------------AACCTGTTAACTCATTAGG----AA AAAAAAATACTTGCAGATATGGTAAGAAAATACTC---TAAAC---TGTA------TAAAATTGTTCCTTTAAAA-ATGA AAAT-----ATCTGGCT-----------CACAAATCAAATCTGAGA >Myotis_myotis TGATGATAT-AAA---------------AATATCTTGAGGAGTA------GGCTCAGTA-------AATTCTTTTATTT- TTGCTTTTAAGTAGAAGACT---TTACTTCATGGAAAAGAA---------TAGCAACACCAGCAGGTATTAACTTAGATA AGTTGGAG---TTTGTATATCAATGCTATT---------TGTTCCTAGTTTTATTG-GAAAATTCTTGACATGC-ATCAC TATATAATTTTAACTTAAACAGCAAGATGGTGGGACTT--ATATATATTTTGAAATGAGTATCTCA------ATAAGT-- --------TCAGCTGTCATCCAGCAAACTCATTTT--------------------AAC-TG-TAACTTCGTAGG----GA AAGAAAATAGCTGCAGGTGTGGTAATAAAACAATTTTCTAGAA---TTTA------TAAAA-TTTTACTTTAAAATATAA AAAT-----ATCTGGTT-----------CACAAATTTAATCTGAAA >Rousettus_aegyptiacus TGATGATATAAAA---------------AATATCATAAGGAGTA------GGCTCAGTA-------AATTATTTTT---- ----------TTAAAAGACT---TTACTTCATGAAAGGGAA---------CAGCAATATCAGCAGGTATTAAGTTGGGTC AGCTGAAG---TTTGTGTTTGTATGCCGATGTTGTTGCTTTTTTCCTTTC--TTTG-AAAAATAATTGACATAT-GTCAC TATATAATTTTAAGTTATCTAGCATGCTGATTTGATGT--ATATTTATTGTGAAACAATTACCACA------ATAAAT-- --------TCAGCTAATATCTAGTAAATTCATTTT--------------------AATATG-CAATTCATTAAG------ -AAAAAATAGCTGCACATGTGGTAACAAAACAATTTTCTAGAA---TATA------TAAGGTTTTTCCCTTAAAA-ATAA AAAT-----ATCTGGCT-----------CACAAATTTAATCTGAGA >Sus_scrofa TGATAATAT-AAA---------------AATGTCTTGAATAATA------GGCCCAGTA-------AAATAATTTG---- ----------TTAGAAAGTT------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------TATTAG--AATTTATTAGC------ -AAAAAATAGCTTCAGATATG--------------CTCTAGGA---TATA------TAAAATAATTCCTTTAAAATTTAA AAATTTTACATTTAATTAAATTTAAATGTAAAAATTTAATCTGAAC >Bos_taurus TGATGATAC-TAA---------------CATATCT-GAGGAATA------GGCCCAGTA-------AATTCATTTATTT- ---------GTTACGAAATT------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------TATTAG-GGATTTATTTGG-----A AAACAAATAGCTTCAGATGTGATAATAAAACAATTATCTAGAA---TATA------CAAAA-TTTTCCCTTAGAGTATAA AAAT-----ATCTAGCT-----------CACAAATCTAATGCAAGA >Equus_caballus TGATGATAC-ATA---------------AATGTCTTGAGGAGTA------GGTGCAGTA-------AATTCATTT----- ---------------TAACC------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------TG-TAACTCATTAAG-----A AAAAAAACAGCTGCAGATGTGGTAATAAAACAATTCTTGAGAA---TATA------TGAAATTGTTCCCTTAAAATATAA AAAT-----ATCTGACT-----------CACAAATTTAGTCTGAGA >Ceratotherium_simum TGATGATTT-AAA---------------AATATCTTGAGGAGTA------GGTCCAGAA-------AATTCATTT----- ---------------TAACC------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------TG-TAACTCATTAGG------ AAAAAAATAGCTGCAGGTGTGGTAATAAAACAGTTCTCAAGAA---CATA------TAGGGCCAGCCCC----------- -----------GTGGCT-----------TAGTGGTTAAGTGTGCGC >Condylura_cristata TGACAACAT-------------------AATATCTTGATTAGTA------GACCTAGAA-------CATGTATTCT---- ---------------AAACC------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------TG-TGACTC-----------A GAAAAAAAATCTGCCACTATGGTAATAAAGCACTTTTGTAAGG---TGTA------TAAAAAGTTTCCTTT---ATATAG AACT----------------------------------ACCTGAGA >Sorex_araneus TTATGCTATTTTATAAGCATATAAGCTGGACATTTTAATATCCAGCTACTGGCCCAGCA-------AAATAATTC----- ---------------TTAAC------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------ATG-CATCTC---AGG------ ---AAAATA--TGCAAATATAGTAATAAAATGCTTATCTGGAA---TATA------TAAAGTCATTCATTTTTACTGAAA AACA-GTACCTGTG--------------CATTACTTTAATCTGAAA >Homo_sapiens TAATGGTAT-AAA---------------AACATTTTGAAGAGTA------GGTCCAGTA-------AAATAATTTT---- ---------------TAAGC------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------TA-TGACTCATTAGA----AA ACAAAAATAGCTGCAGATGTGGTAATAAAACAACTCTCTAGAA---TGTA------TAGAATTGTCTTTT---AATATAA AAAC-----ATCTGGCT-----------CAAAAATTAAATCTTAGA Dog138_LINE >L1MA9_3END -------------------------------------------------------------------------------- ----------GGCTGGGGGGTGGGGGAAATGGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATA AGTTCTGGAGATCTAATGT--ACAGCATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAG TAGATCTTAAGTGTTCTCACCACACACAAAAAAATG-----------------------GTAACTATGTGAGGTGATGGA TATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGT-ATATCAAAACAT--------------------- ----------------------------------------------------------------------------CACG TTGTACAC------------------------------------------------------------------------ -----------------------------------------------------------CTTAAATATATACAATTTTTA TTTGTCAATTATACCTCAATAAAGCTGGAAAAA----------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------- >Canis_familiaris TGTCAGCACTTCTGCAGAAATTGCTACCTTGCTAC--TCAGGTTTATCTGTG--TATAGCCTCTC-CTCTC---CAAA-- AGAGGGA--------------GTGAGACTCAGAGAAAGA-TGGTCAAAAGATATAGACTCCCAATTATG--AGACCAAGA GCCACTGGAGATGTAATGTAGAGAACATAAGAATAGTTGTTAACCTCACTGTGCCCTATATTTGAAAGTTGTTAAGAGAG TAGATCTTAAAAGTTCTCATCACAAGGAGAAAAACTTTACTTTA------------AAAAAAAATCTATGAGAGGATGG- -ATGTTAATTAAATTTACTTCGGTACTCATTTTACAA--TAGATGT--AATCAAGTCCT--------------------- ----------------------------------------------------------------------------CATG CTGTCCAC------------------------------------------------------------------------ -----------------------------------------------------------CTTAAATTTACACAG-TCCTG GCTGTCAATTACAGCCCCAAAAGGCTAGGGG------AGTAGGAGAAT---CAAAAG-CCAAACTA-CAGAAACAACATG -TAAAATCTTTTTTT----------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------AGTATGTATGTTTTAA >Felis_catus CTTCCCCATTTCTGCAGAAATTGCCACCTCGTTAC--TCAGAATGACCTACT--TATGGCCTCCT-CCCCC---CAA--- ATAGGGA--------------GGGGGAATTGGAGGAAAG-TGGTCAAAAGACACAAAC-TCCAGTTTTG--AGATAACCA ----------------------------------------------------------------AAACTGGGGATGTATG TAGATCTTAAAAGTCCTCGTCACAAGGAGAAAAACCTTTTGTTTCTCTTCTTTTTCAAAATATCTGTATGCGATGACAG- -CCGTTCGCTAAATTTACTGTGGGACTCATTTCACAA--TATACGTCAAGTCAGGTCCT--------------------- ----------------------------------------------------------------------------CGTG CTGTACAT------------------------------------------------------------------------ -----------------------------------------------------------GTGAAACTTACACAG-GGCTG TATGTCAATTATAGCCCAATAATGCTGGGGTGGG---GGGAGGATAAT---CAAAAG-CCAAAATA-GAGAAACAAAATA -TAAAA--TGTTTAT----------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------AGTGTGTCTGTTTCAA >Myotis_myotis CTTCA-CATTACTGCAGAAATTGCTACCTCATTAC--TCAGGATTGTCTTTT--AATAGCCTCTT-CCCCC---ATA--- GGAAGGT--------------GGGGGAATTGGATGAAGG-TGGTCAAAATATATAAACTTCCAGTT-----AGATAAGTA ----------ATGTTATAT--ACAACACGATGACTACAGGTAACACTGCCATATGGTATATTTGAAAGTTGTTAAGAGAG CAGATATTAAGAGTTCTTATCACAATGGGAAAAAATGTTTTCTC------------------TTTTTTTTGTATGATATG TATGTTAACTAAAATGTTTATGGTAATCATGTCACAA--TATATGT-AAGTCAAGTTATATTTTTTTTAAAATATATTTT ATTGATTTTTTACAGAGAGGAAGGGAGAGGGATAGAGAGTCAGAAACATCAATGAGAGAGAAACATCGATCAGCTGCCTC CTGCACATCCCCCAATGGGGAAGTGCCCGCAACCCAGGTACATGCCCCTGACCGGAATCGAACCCGGGACCCTTCAGTCC GCAGGCCGAAGCTCTATCCACTGAGCCAAACCGGTTTTGGCGTCAAGTTATATTTTATACTTAAATTTACACAC-TGCTG AGTGCCAATTATAGCTTAATAAGACTGG---------GAAAGATCGAT---CAAAAA-TGAAAATG-TAGAAACAAAAAT CTAAAA--TGTTTTC----------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------AGTGTGTATATTTTAA >Rousettus_aegyptiacus CTCCACTACTGCTGCAGAAATTGCTACCTCATTAT--GCAGGATTATCTGTT--AATAGTCTCTT-CCACT---AAATGT GGGGGGT--------------GGGAAGACTGGATGAATG-TGGTTAAAAGGTACAAACTTCCAGTTTTG--AGATAAATA ------GGTAATGTAAGGT--GCAATATGAAGATTATAGTTAACACTGCTGTATAGCGTATTTGAAAATTGTTAAGAGAG TAGAT----AGAGTTCTCATCACAAGGAAAAAATATTTTTTT-----------------GTATCTGTATAAGATGATAG- -ATGTTAACTAAGTTTATTTTGGTAATCATGTCACAA--TATATGT-AAGTCAAGGCAT--------------------- ----------------------------------------------------------------------------TATG CTGTATAT------------------------------------------------------------------------ -----------------------------------------------------------CTTAATCTTACACAG-TGCTG TATGTCAATTATAGCTCTGTAAAACTGTGAGAG----AAAGAAATAAT---AAAAAA-TCAAAATA-TAGAAACAAAATT -TAAAT--TGCTTTC----------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------AGTGTGTATATTTTAA >Sus_scrofa TGTCACCGTGTCTGCAGAATTTGCTTCCCTGTGACCATCAGGATTATCACT---GGTAGCCTCTT-CCCCT---ATGA-- AGATGGT------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------AAAAAAGCCAACATATTAAAAACATGATT -TTGAA---ATTTTC----------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------AGGGTGTCAATTTTTA >Bos_taurus TGTCACCGTTGCTGCAGCAATGGCTACCTCATGATAAT-AGGAT------------TAACCTCTT-CCTCC---ATAA-- AAATCAT------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------AAAAAG-CCAAAATA-CAGAAACAAGATT -TAAAA--TATTTTC----------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------AGTGTGTAAATTTTTT >Equus_caballus CTTTACCATGTCTGCAGAAATTGCTAGCTTGTTAC--TCAGGATTATCTATT--AATAGCCTTTTCCCCCC---ATAA-- GGATAAT------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------AAAAAA-CCAAAATA-TAGAAACAAGACA -TAAAA--TATCTTC----------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------AGTGTGTATATTTTAA >Ceratotherium_simum CTTTACCACATCTGCAGAAATTGCTACCTTGTTCT--TCAGGATTATCTATT--AATAGGCTTTT-CCCCC---ATAA-- GGATAAT------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------AAAAAA-CCAAAATA-TAGAAATAAGATT -TAAAA--TATTTTC----------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------AGTGTGTATATTTTAA >Condylura_cristata CTTTA--------------------------TTGC--TCAGGATTTTCTATCTGTATAGTTTCTT-CTGTC---AAAA-- GGATAAT------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------AAAAAT-CTAAAGTA-CAGAAAGAAAATT -TAAAT--TTTTTTC----------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------TGTGTA---TTTTT >Sorex_araneus CTTTACCACTCCTGCAGAAATTGCC-TCTTGTCAC--TCAGCATGGTCTATT--AATA-TTTCTT-TCCCC---ATAA-- GGATAAC------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------AAAACC-CCAAAATA-TAGAAATAAAAAT -TTAA----ATTCTTATATATATATATATGTACATATATACACACACACACACACACACACACACACACACACACACGGG ACTGCATATCAGGCCTGGGGCAGAATGGGCACAGCCAACAGTAAAGCTACTCCCAGTTTGGTGTTTGGTGAATGACTCTG AGTGTGCTCAGGGACCATTTAGTGCTGGAAATGAAACATGGACCTCCTGTATGTAAAGCATATCACCAGCCTGTTGAGCC ATATCTCTGGCCCTCAGTGTGTATATTTTTA >Homo_sapiens TTTCACCATTTCTGCGGAAATCGCTACCTTGCTCT--TCAGAATTATATATT--AATAACCACTT-TTCCC---ATAA-- GAATAAT------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------CAGAAA-CCAAGATA-CAGAAACAAAATT -TTAAA--TATTTTC----------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------AGTGTGTATGTTTTTA Dog143_LINE >L1MA9_3END ----------------------------------------------------------------------------TACA GCATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCACCACA CACAAAAAAA--TGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACG TATATCAAAACATCACGTTGTAC----------ACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAG CTGGAAAAA----------------------------------------------------------------------- ------------------------------------------------------------------------ >Canis_familiaris ATTCGAAGAGGGAAGGGGTGCTAATTTGCCTGTTGT----TAAGAGTCATTTAT---GAAGAATACTCAGAGA------- ---------TTACACTTAATAATACTGTACTGCATATTTGAGAAGTGCTAAGAGAGTAGATCTTATAAGTTCTCATCACA AGAAAAACAATTCTGTAGCTAGGTGTAGTGATGG--ATGTTAGCTAGAATTACTGGGGTGATCATTTTGCAGTATATACA AATATCAAGTCATTATGTTAAAC----------ACCTGAAGCTAATATAA-TGTTATAT-TCAATTATACTTCAATTTGA GAAAAAAAAAAAAGGAGAG---------TTCCAAACAAAGAAACCCCTCC----------------------AAA----- ----ACCACTCAGAGA---AAA-AGATAAAGGCTTAAATTGCCTATGGTGGCATATG-TTTAACTT--CTGG >Felis_catus ATTGAAAGTGTGAAGGGGTGCTAATTTGCATGCTGT----TAAAGGTCATCTAT---GAAGAACACTCAGAGA------- ---------TTATACTTAATAAGACTGTATTGCATATTTGAGAGTTGCTAAGAGAGTAGATCTTGTAAGTTCTCATCACA AGAAAAAGAATTTTGTGGCTATGTACGGTGATGG--ATGTTATCTAGACTTACTGTTA-----------------ACACA AATGTCAAATCATTATGTGAAAC----------ACCTGAAACTAATGTAA-TGTTATAT-TTGATTATGCTTCAATTTAA GAAAAAAAGAAAAACAAAGGAAACAAAATTCCAAACAAAGAAAACCCCCC----------------------AAA----- ------CCGTCAGAGA---AAA-AGATGAAGGTGCACATTGACTACAGTGGCATATG-TTTACCT---CTGG >Manis_pentadactyla ATTGAAAGAGTGAAAGCGTACTAATTTGCATGCTGT----TAATGGTCATCTGT---GAAAAACAATC--AGA------- ---------CTATAGTTAATAATACTGTATTGTGTATTTGAAAGTTGCTAAGAGAATAGATCTTAAAAGTTCTCATCACA AGAAAAAAAAATTTATACCGATGTATGGTGATTG--ATGTTAACTAGACTTATTATTGTGATCATTTTGTAGTGTACACA GGTGTGGAATCATTATGTTGTACTAATAAAAGACACTGAAACT-ATATAA-TGTTATATGTCAA-----CTTTAA---AA AAAGGGAAAAAAAGGAAAGAAAATC---TCCCAAACTAAAGAAACCAAAAGCAA------------------AAGC---- ----AAAAAGGAGAAA---AAG-AGATGAGAGCTTAAATTTCCTACAGTGGCATATGTTTTAATTT--CTGG >Equus_caballus ATTG--AGAGTGAAGGGGCGCTGATTTGCATGCTGT----TAAAGGTCATCTAT---AAAAGACACTCAGGGA------- ---------CCATAGTTAATAATGCTGTATTTTATATTTGA-AGTTGCTAGGGGAGTAGATCTTAAAAGTTCTCATCACA AGAAAAAAAATTTTGTGACTATGAATGGCGATGG--ATGTTAACTAGAT---TTGTGGTGATCATTTCACAATATCTACA AATGTTGAATCGTTATGTTGTAC----------ACCTGAACCTAATATAA-TGTTGTATGTCAAGTATACCTCAA--CAA AAAAAAAAACAAAAGGAAGAAAAT----TCCAAAACTAAACAAACAAGA-----------------------AACC---- ----AACACTTAGAGA---AAA---AGGAGAACATAAATTGCCTCCAGTGTCATATG-CTTAACTC--CTGG >Ceratotherium_simum ATTGAAAGAGTGCAGTGGTGCTAATTTGCATGCTGT----TAAAGGTCATCTAT---AAAAAACACTCAGGGA------- ---------CTATGGTTAATAACACTGTATTGCATATTTGAAAGTTGCT--GAGAGTAGATCTTAAAAGTTTTCATCACA AGAAAAAAGA-TTTCTAACTATGTATGGTGATGG--ATGTTAACTAGAT---TTCTGGTGATCATTTCACAATATATACA AATATTGAATCATTATGTTGTAA----------GCCTGAACCTAATATAA-TGTT-TATGTCAATTATACATTAC----- -------AAAAAAAACAAGAAAAT----TCCAAAACTAGAAAAACAAACAGCAAACAAACAAACAAACC---AACC---- ----AACACTCAGAGA---AAA-AGATGAGAGCATAAATTGCCTACAGTGTCATATA-TTGAACTCCTCTGG >Sus_scrofa ATTGAAAGAAGGAAGGGGTGCTCATTTGCACCATCTTA--TAAAGGCCATCTAT-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------AAAA---- ----AACATGCAGAAA---AAAGAGATGAGAACATAAACTGCCTACAGTGGCATATG-TTTAACTC--CTGG >Bos_taurus TTTAAAAGAAAAAAGGGGCACTCATCTCCATCCTGT----TAAAGGCCATCTAT-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------AAAAA--- ----AACACACAGAAA---AAA-GGATGAGAGCATAAGTTTCCTACAGTGGCATATG-CTTAACTC--CTGG >Myotis_myotis ATCGAAAGAATGAAAGAGCTCTAATTTGCATGCTGTTAAATAAAGGCCATCTAT-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------AAAA---- ----AACACTCAGAGA---AAA-AGATGAGAACATGAATTGCCAACAGTGGCATATG-TTTAACTC--CTGG >Rousettus_aegyptiacus ATTGGAAGTATAAAAGAGCTCTAATTTGCAT--------------GTCATCTAT-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------AAAAAAAA AAAAAACACTCAGAGA---AAA-AGATGAGAGCGTGGATTGCCTACAGCGACGTATG-TTTAACTC--CCGG >Condylura_cristata ACTGAAAGAGTGAAGGCTCACTAATTTGCATGCTGT----TAAAGGCCATCTAT-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------AAAA---- ----AACACTTAGAGA---CAA-AGATGAGAACAAAAGTTGCCTACAGTGACATATG-TTTAGTTC--CTGA >Sorex_araneus ATGGAGAGAGTAAAGACACACCAATTTGCCTGCTGT----TAAAGGCCATTTAT-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------AAAA---- ----AATTTACAGAAA---AGG---ATGAGAGTACAAATTGCCTATAGTGGCATATG-TTTAGCTC--CTGG >Homo_sapiens ATTGAATGAACAAAAGGGTACAAATTTGCATGCTGT----TAAAGGCCATCTAC-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------AAAA---- ----AACACTCAGAGA---AAA-AGATTAGAGCATAAATTGCCTATAGTGGCATCTA-TCTAACCC--CTGG Dog151_LINE >L1_CARN7_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------TTTTTTT-------ATTTGAG-TATAATTGACATACAATGTTATATT AGTTTCAGGTGTAC-AACATAGTGATTCGACATTTGTATACATTGTGAAGTGATCACCACAATAAGTCTAGTTACCATCT --GTCACCATACAANGTTANTACAATATTATTGACTATATTCNCC----------------------------------- ------------------------------------------------------------------------ >Canis_familiaris TTTCATGGCACATCAACGCTCCC--------AAGGAACAAAGATAATTCTTTGCCAAGA---------------TGA--- CATAT---TCCACCTTTTTAA----------------------------------------------------------- --------------------AAAC---------TTTTAAC-------ATT-GAGTTGTAAGTGACATACAATGTTATATT CGTTTCTGGTGTAC-AGCATAATGATTCGGTATCTGTATACACTGCAAAATGATCACTACTAGAAGTCCAATTAACGTCT ------------AGAAT---TACAACAGTTATTTTT------------CCTGTATCTCTTTTCTTCTGTCTTTA--CTTT TTTTCT---GAACATAGCTCACTCCCAGCTCAGTCAGAAAAGTCCTGTGGTCCCCCTGGGAGTGTGGAACAG >Felis_catus TTTCGCGACACATCAAAGCTCCC--------AAGGGACAGAGAAGATTCTTTGCCAGCA---------------TGA--- CATAT---TCCTCCTTTTTTA----------------------------------------------------------- --------------------AA-----------CTTTTAA---AAAAATT-GAG-TGACGTATACATATAACATTATATT CGTTTAAGGTGCACAAACATAATGATTTGATATTTGTATACACTGCAAAATGATCACCACGATAAGTA-----AGAGTGT --CCCACT------------TACAATGGTTTCTTTC------------CTTGTGTCTATTTTCTTCTGTCTTTACTTTTT ATTTCT---GAATATAGCTTGTTCC-AGCTCCGTCACCAAAGCCCCT-TGGTCCCCTGGGAATGTGGTCCAG >Manis_pentadactyla TTTCCCTACACATCAAAGCCCTC--------TAGGGACAAAAAGAATCCTCTGCCAGAA---------------TGA--- CACAG-----TGCTATTTTTG----------------------------------------------------------- --------------------AAACT--------CTTTTGT-------ATTAAGG-GATAGAGCCCATG------TATATT ACTTACAGGTGCAC-AACTTTATGCTTTGGTATGTGCATATACTGCAAGATGATCGCCACAAGAAGTCTAGTTAGGATCT AAGTCACCAGGCACAGT---TACAAGGTTTTTTCCT------------CGTGT--CTTTCTTCTTCTGTCATAACTCTTT GTTTCT---GAATGTAGCACATTCTCAACTCTGCCACCAAAG---------TCCCTTGGGAGTGGGACCCAG >Myotis_myotis TTTCACTACAAGTCAAACCCCCC--------TACAAACAAAGAGAATCCTCTACCAGAATGATTGAAGTATAACTGA--- CATA---------------------------------------------------------------------------- --------------------AAACC--------TTCTATT---------------------------------------- AGTTTCAGGGGTA--AACATAATGAGTTGATAGTTGTGTGTATTGTGAAATGACCACCCC---AAGTCTAGTTAACATCT --GCCACCATACATAGT---CACAAAATTTTTTCC-------------CTTGTATCTTTTTTCTTCCATCTTAA----CT ATTTCT---GAACATAA-TCATTCACAACCCTATCCCCAAGG---------TCTCTTGGGGGTGGGGTCCAG >Rousettus_aegyptiacus -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------ATT---------------------------------------- AGTTTCAGGTGTAC-AATATAATGACTTGATATTTTTACATATTGCAAAATGATCAC------AAGTCCAATTAACATCT --GTCACCATATGCAGT---CACAAAATTGTCTTTTC-----------CTTGTGTCTTTTATCTTCTGCCTTAA----CT ATTTCT---GAACGTAGCTCATTCTTGACTCTGTCACTAAGGCCCCT-TGGTCCCTTGTGCGTGGGGTCCAG >Sus_scrofa TTTCACTCTACATCTAAGCCCT---------TAAGAACAGAGAGAATCCTCTGCCTGAA---------------TGA--- CCTACTCCTTTTTTTTTTTTT----------------------------------------------------------- --------------------TAAC---------TTTTTCT---------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------GAACATGGCTCATTCCCAGCCCTGTTACTTGAGTCCCT-CCGTCCCTGGGGAGTGGGGTCCAG >Bos_taurus TTTCACTACATGTCCTAGCCCTT--------TAAGAACATAGAGGGTCCTCTGCCTGAA---------------TGA--- CATGT---TCCTTTTTTATT------------------------------------------------------------ ---------------------------------TTTTCCT---------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------GAACATGGCTTATCCCTAGTTTTGCCACCAAGG----------TCCCTGGAGATGGATTCCAG >Equus_caballus TTCCACTCCACATCAAAGCCCTC--------TAGGAACATAGAGAATCCTCTGCCAGAT---------------TGA--- CATATTCCTCCTTTTTTTCTT----------------------------------------------------------- --------------------AAGTCAT------TTTTTCT---------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------GAGCATGGTTCATTCCTAACTCTGTCACCAAGGTCCCA-GGATCCCTTGGGAGCA-GGTCCAG >Ceratotherium_simum TTTCACAACACATCAAAGCCCTC--------GAGGAACACAGAGAATCCTCCGCCAGAA---------------TGA--- CATAG---TCGTCTTTTTTTT----------------------------------------------------------- --------------------AAACT-----CTTTTTTCCT---------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------GAACATAGCTCATTCCTAACT--GTCACCAAGGTCCCA-TGATCCCTTGGGAGCG-GGTCCAG >Condylura_cristata TTTCACAGCATATCAAAGCCCTC--------TAGGAATATAAAGAAGCTTCTACCAGAC---------------TGA--- CATATTACTTCTCTTTCTTTA----------------------------------------------------------- --------------------AAAATACAAGATTTATTTCT---------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------GAACATAGCTTACTTCTAACTCTGTCACCAAGGACAGAGTTGTCCTTTGGGAACAGGGGCCAA >Erinaceus_europaeus TTTCATTATACATCAAAAACTTC--------TAGGGACATGGAAAATCCTTTGCCAGAA---------------TGG--- CATAC--------TTTGCTTAACAAAAAAGAAAGAAAGAAAGAGAGAGAGAGAGAGAGAGAGAAAGAGAAAGAAAAAAAG GAAAGAGGAGAAAGGAAAAGAAAAGAAACTCTTCATTTCT---------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------GGATATAG-------------TTGTCACCAAGATCCTT-TGATCCCTTGGGACCTGGAT-CAG >Cricetulus_griseus TTTCTTTGTGTTGCTTTGCTCTTCCTGGTTGTACAAAAGTGGAGAACCCTCTGCCCTAA---------------TGA--- CCTGT---CTTTCTGTCTTTT----------------------------------------------------------- --------------------AAGAC--------CTTTTCT---------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------TGACACAG-----CCAGCACTTTGCCACTAAAGTCCTTTTGAACTAC-----ATAGGACCCGG Dog157_LINE >L1MA9_3END -------------------------------------------------------------------------------- ---------------------------TTTTTCCAGCTTTATTGAGGTATAATT--GACAAATAAAAATTGTATATATTT AAGGTGTACAACGTGATGTTTTGATATACGTATAC--ATTGTGAAA----TGATTACCACAATCAAGCTAATTAACATAT CCATCACCTCACATAGTTACCATTTTTTTGTGTGTGGT------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----GAGAA-CACTTAAGATCTACTCTCT-------------------------------TAGCAAATTTC-AAGTATAC AATACAGTATTATTA----------------------------------------------------------------- ------- >Canis_familiaris AAATGAGTGATAAATAGCTAACTTTTGTAAGTTATTTA--------AAGAAGGGACTTG---ATACATTTGAT------- -TTTTT-------------------------------TAAATTGAGGTATAATT--GACATAT-AACATTATACCAGTGT CAGGTGCACAACACATTAATTTGGCATTTTTATAT--ATTGCAAAA----T-ATCACCCCAATAAGTCTAGTGAAC--AT CCACCTCCATACATAGTTA--AAATTTTT--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------TAT-------------------------------------------------------------- ------------------------------------------------------------------------------TG TGATAAGAA-CCTTTAAGATGGGTTCTCT-------------------------------TAGCAACTTTC-AAATATAC AACAC-------------GT----TT-ATGTCT---AATGCTTTCTCCCACATATCATATTTGCTACCTGTATTAAACAT TCCTAAT >Felis_catus AAATGAGTGAGAAATAGCTAACTTTTGTAACTTGTTAA--------AAGAAGGGATCTG---GCATATTTGAT------- -TTTTT------------------------------TTT--------TTCAATT--CACAT----ACATTATACTAGTTT CAGGCATACAACACATTGATTCAATATGTGTATAT--ATTGCAAAA----TGATCACCACGGCAAGTCTAGTTAAC--CT CCATCACCACATGCAGTTC-TACATTTTTT-------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------CCT-------------------------------------------------------------- ------------------------------------------------------------------------------TG TGATGAGGA-CTTTTAAGATCTGTTCTCT-------------------------------T-GCCACCTTC-CAATATAC AATAGT------------GTATATTT-ATTTCT---AATGCTTTCTCCCGTATTTCATATTTGCTACCTGTATTAAACAT TCCTACT >Manis_pentadactyla AAATGAGTGATAAACAAC-----TTTATAAGTGATTA---------AAGAAGAGATCTT---GTATATCTGAT------- -ATTTT------------------------------TTTAATTGAGATACAATTTAAACATAT-AACATCATATTAGTTT CATATTAACAACACATAGATTTGGTATTTGTATAT--GTTGAGAAA----TTATCACCACACTAAGTCTAGTTAAC--AT TCACCACCACATGTGGTTA-CAAATTCTTTCT------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------CCT-------------------------------------------------------------- ------------------------------------------------------------------------------TG TGATGAGAT-CTTTTGAGAT----TCTCT-------------------------------TAGCAACTTCC-AAATATGC AATAT-----------------ATTTGATTTTT---AAAGCATTGTCCTATACATCGTATTTGCTACTGCTATTAAACAT TCCTATT >Equus_caballus AAATGAGTGATAAACAGCTAACTTTTATAAGTGATTAG--------AAGA-GGGATCTT---GTACAGTTAAT------- -TTTTT------------------------------TTAAATTGAGATATAATT--GACATAT-AACATTATATTAGTTT CAGGTGTACAACATATTGTTTCAGTATTTGTATAT--ATTGGTAAA----TGATCATCACAATAAGTCTAGTTAAC--AT CCACCACCACAT---GTTA-CAAATTCTCATTTCTTGTGATGAAAAACTTTTTTTTTTTTATTTTTATTTTTTTCGGATG TCCATCATATTTCAAATTCTGGATACATTACATCATGTTCACCTCCTGAACACTAATTATAGTGCGTCCCCTCACATGTG ACCCTAATCACCCCTTTTGCCCTCCCCACCCTTCCCCAATGGTAACCACCAGTCCAATCTCCAATGCTATGTGTTTATTT TTTTTGTCGTTTTTATCTTCTACTTGTGAGTGAGATCATATGGTATTTGACTTTCTCCCTCTGACTTATTTCACTCAGCA TAATACCCTCAAGGTCCATCCATGTTGTCACAAATGGCTGGATTTCATCATTTCTTATGGCTGAGTAGTAGTCCATCATG TGATGAAAAACTTTTAAGATCTACTCTCT-------------------------------TAGCAACTTTC-AAATATAC AGTGTT------------GTATATTTGATTTTT---AATGCATTCTCCCACACATCATATTTGCTGCCTGTATTAAACAT TCCTACT >Ceratotherium_simum AAATGAGTGATAAACGGCTAACTTTTATAAGTGATTAG--------AAGAAGGGATCTT---GTATAGTTGAT------- -CTTTT-------------------------------TAAATTGAGATATAATT--GACATAT-AACATTATATTAGTTT CAGCTGTACAACATATTGATTCAATACTTGTATAT--ATTGTGAAA----TGATCATCACAATCAGTCTAGTTAAC--AC CCACCACCACATGTAGTTA-CAAATTTTTTT------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------TCT-------------------------------------------------------------- ------------------------------------------------------------------------------TG TGATGAGAA-TTTTTAAGATTTACTCTCT-------------------------------TAGCAACTTTC-AAATATAC AATATA------------GTATACTTGATTTTT---AATGCATTCTCCTACACATCATATTTACTACCTGTATTAAACAT TCCTACT >Myotis_myotis AAATGAGTGATAAGCAGCTAACTTTTATAAGCGATTAG--------AAGAAGGGATCTT---ATATATTTGAT------- -TTTTT---AAAAAATCGAGATATTCACACATAACATTATATTGAAACATTATT--GACATAT-AACATTATATTAGTTT TAGGTATACAGTACAGTAATTTGATATTTGTATAT--AATGTGAAGTGATTGATCACCACAATAAGCCTACCTAGC--AT CCATTGTTTCAC--AGTTA-CAATTTATT--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------TCT-------------------------------------------------------------- ------------------------------------------------------------------------------TA TGATGATAA-CTTTTAAGATCTACTGTCT-------------------------------TAGAGACTTTC-CAATAAAT AATATA------------GTATGTTTGATTTTT---AATACATTCTCCCACA--TCATATTTGTTACCTGTATTAAACAG TCCAACT >Rousettus_aegyptiacus AAACAAGTGATAAACGGCT----TTCATATGTGATTAG--------AAGAAGA-----------------GAT------- -TTTTT------------------------------TTTAAATGAGATATAATT--GACATAT-AACATTACATTAGTTT CAGGTATA----ATATTGATCCAACATTTTTACACTAAATGGGAAA----TAATCACCACAATAACTCTAGTTAAC--AT CCATCATGACAC--AGTTA-CAATTTTTT--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------TCT-------------------------------------------------------------- ------------------------------------------------------------------------------TG TGATGAGAA-CTTTTATGATCTACTCTCTTTCAGATATATAACATAGTATGTTTGATTTCTAATG-CTTTCAAAATATAT AATACG------------GTATGTTTGATTTTT---AATGCTTTCTTTCACACATCATATCTGCTACCTGTATT-AACAT TCCAACT >Sus_scrofa AAATGAGTGATACACAGCT----TTTATGATTGA------------AAAAAAGGATCTT---GTATATTTGAT------- -TTTTT-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------AATGCCTTCTCCCACACATTATATTTGCCACCTCTGTTAAATAC CCCTGCT >Bos_taurus AAATAAATGGTAAATAGCTAACTTTTATATGTGAT--A--------AAGAAGGGATCTC---GTATATTTGAT------- -TTTTT-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------AATGCATTCTCGCACACATCATATTTGTTATCTCTGTAAACACC CACTACT >Condylura_cristata AAATGAGTGATAAAGA--TATCTTTTCAAGGGGATTAG--------AGGAAGGAAT-TT---GTGTATTTGAT------- -TTTTT-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------AATACATCCTCCAACATTTT-TATTTGCTAGCCATATTAAA-AC TGCTATT >Solenodon_paradoxus AAATGAGTGATAGGTAATTA-----TACAAACCATTTAATTCTTTTAAGAATGGATTGT---TTATATTTGATTTTTCAT AATTTT-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------AATACATTCTCCTACATATCATATTTTCTATCTATATTAAAAAT TCCTACT >Homo_sapiens AAATGAGTAGTAAACATTTAAC-TTTATAAGGGATTGT--------AAAAGGAGATCTT---ATATATTTGA-------- -TTTTT-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------AATGTATTCTCCTACACATCAGACTTGCTATAGGTATTGAACAC TTCCACT Dog180_LINE >L1MA9_3END -------------------------------------------------------------------------------- -----------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATG TTTTGATATACGTATACATTGTGAAATGATTACCACAATCAAG-CTAATTAACATATCCATCACCTCACATAGTTAC--- -CATTT-TTTTGTGTGTGGTGAGAACACTTAAGATC----TACTCTCTTAGCAAATTTCAAGTATACAATACAGTATTAT TAACTATAGTCACCATGCTGTACATTAGATCTCCAGAAC----------------------------------------- --------------------------------- >Canis_familiaris CCCT--------TTGCTTCTTACCTCTAAGTG-CTTC-----TGTTGGCAGAGCTAAGAAAGAA---A-GGTTTAAATTT TAA---------CCTTTTTCAAAAAGTGAGGTATAGTTAACATATA-ACAC--TATTAGTTTCAGGTGTACAGCGTA--- ATTTGCTATTTGAATATATTATGAAATGATCACCAC-AT-AAGTGT---CATCATTT--ATCACCTTACATAGTT-TAAA AAATTTCCTTTTATTGTAATGATGACTTTTAAGATC----TGTTCTCTTAGCAACTTTCAAACATGCAATACAGTCTTAT TAACAATAGTCACCATGCTGGCTGGTAT--------------AACCTCC-AAATTTTAA---TCTCTTGATGAAATAAAG TCCATCCATTCTACA-TTGTGGTTTTAAATATG >Lynx_canadensis CCCT--------TTGCTTCTTACCTCTAAGTG-CCTT-----TGTTAGAGAGACGAAGAAAGGA---A-GGCTTAAATTT TAA---------TCTTTTTTTAAAC-TGATGTGTGATTAACATATA-ACGCTGTATTAGTTTCACGTGTACAATGTA--- ATTTGATATTTGAATATATTACAAAATGATCACCAC-AG-AAGTGTAGCTAACATTT--GTCACCTTACATAGCTACATA AAATTTCTTTTTCTCCCAATGAGGACTTTTAAGATC----TACTCTCTTAGCAACTCTCAAATATGCAATATAATATTAT TGACTCTAGTCACCATGCTGGACAGTAC--------------ATCTCCC-AAATTTTAA---TCTCTTGATGAAATAAAG TCCATCCATTCTACCTTTGTGGCTTTAAATATG >Manis_pentadactyla CCTT--------TAGCTTCTTACCTCTATGTGCCTTT-----TGTTGGAAGGGCTAGGAGAGAG---AAGTCTTAAATTT TAA---TC-TTTCCTTTTTTTTAAATTGAGGTATAATTGACATGTA-ACATTATATTAGTTTCAGGTGTACAATGGA--- ACACAATAATTGAGTATATTGCAAAGTGATCATCCC-AGCAAGTGTAGTTCACATCT--GTTGCCTTACATAGTT----- AAATTAGTTTTTCTTGTGATGAAGACTTTTAAGATCTACTTACTCTCTTAGCAACCTGCGAATGTGTA--ACAGTATTAT TAGCTATAGTCATCATGTTGTATATTAC--------------ATCTCCC-AAATTTTAA---TTTATTGATGAAACAAAG TCTAACCATCTTACATTTGTG-CTTTAAATATG >Equus_caballus CCTT--------TTGCTTCTTACCTCTAAGTGCCTTT------GTTGGAGGGGCTAGGGAAGGA---A-GAC--AAATTT TAA---TCTTTCTTTCTTTTTTCAGTTGAGTTATAATTGACA-----------TATTAGTTTCAGGTATACAACATAATC ATTTGATATTTGAATATATTGCAAAATGATCACCAA-AGCAAGTGTAGCTAAAATCC--ATCACCTTACATAATTACACA ACGGTTTTGTTTCTTGTGATGAGGACTTTTAAGACC----TGCTCTCTTAGCCACTTTCAAATATGCAATACAGGATTAT TAGCTAGAGTCGCCATGCTGTACATTAT--------------ATGCCCT-GAATTTTAA---TCTCTTGATAAAATAAAG TCTGTCCATTTTACATTTGGGGTTTAAAATATG >Tapirus_indicus NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNN NNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNATG--GACTTTTAAGATC----TACTCTCTTAGCAACTTTCAAATATGCAATACAGAATTAT TAACTATAGTCACCATGCTGAACATTGC--------------ACCCCCCCAAATTTTAA---TATCTTGATAAAATAAAG TCCATCCATATTACCTTTTTGATTTTAAATATG >Sus_scrofa CCCT--------TGGCTTCTTACCTCTAAGTACCTTT-----TGTTGCAAGGACTAGGAAAAGG---AACGCTTGAATTT TCA----------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------TCTCTTGATGAAATGAAG TCCATTCATTTCACATTTGTGGTTCTAAATGTG >Bos_taurus CCTT--------TGGCTTTTTACCTCCAAGAGCTTTT-----TGTTGCAGGAGCTAGGAACAGG---AACACTTGGATTT TAA----------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------TCTCTTGATAAAATGAAG TCTATCCATTTTACATTTGTGGTTTTAACTATG >Myotis_myotis TCCT--------GTGCTTCCTACCTCTGGTTACCTTT-----CCTGGGAGGGGCTGGGCAAAGA---AAAGCTTC--CTT TAA----------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------TCTCTTGATGAATTAAAG TCCGTTCATTTTACATTTGTGGCTTTACATATG >Rousettus_aegyptiacus TCTTAAATCTAAGTGCTTCTTACCTCTAAGTGCCTTTTTGTGTGTGAGAGGGGCTAGGAAAAAG---AAGTCTTAACTTT TAA----------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------TCTCTTGATGAAATGAAG TCCACCCATTTTACATTTGTGGCTTTAAATATG >Condylura_cristata TCCT--------TTGTTTCTTACCTTTAATTGTCTTT-----CTTTGGAGGGGCTAAGAAAGGG---AAGACTCCAGTTT TTA----------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------TCTC-TGATGAAATACAG TTCATTCATTTTACATTTGTGGATTTACATATG >Sorex_araneus TTCT--------TTGCTTCTTTCCTTAAAATAACTTT-----TGTTGGA-GGGCTAGCAGAGGA---ATAAAAACA-TTA ATA----------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------TCT--TCATAACATAATA TTTATTCATTTTGTATTTATGATTTTAGATATG >Homo_sapiens CACT--------TTGCTTCTGACCTCTAAGTGTCCTT-----TGTTGAAAGGGTTAGGAAAAGA---AAGGCTTAAGTT- TAA----------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------TCTCTTGATGAAATAAAG TCTATTCATTTTCAATTTGTGGTTTTAAATATG Dog184_LINE >L1MA9_3END -------------------------------------------------------------------------TGGTTGC CAGGGGCTGGGGG--GTGGGGGAAATGGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTT CTGGAGATCTAATGTACAGCATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATC TTAAGTGTTCTCACCACACACAAAAA--------------------AATGGTAACTATGTGAGGTGATGGATATGTTAAT TAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTT TATTTGTCAATTATACCTCAATAAAGCTGGAAAAA--------------------------------------------- ----------------------------------------------- >Canis_familiaris AAACCA--AGGTTCAATGATAAAGTCATATAAATGAGTTCTGCATTATGCAG-----AAGTTTATTTGCC---------- -AAAGACAAA-----GCTGGGGGGATGGAAAGAAGATGGTCAAAGGATACAAAATTCCAGTTATA--AGATAGATGGATA CTGAGGATGTAATGTGCAACACGAAGACGATACTTAACACCACTCTATGATATATAGGTAGATTTTTGGGAGAGTGGATC CTGAGATTTCTCATCACAGGGAGAAA-----TTTTCTTTTTTTCTTAATTGTATTTTAGCGAGATGATGG--ATGTTAAC TGGACCTGATGTGGTAAGCATTTCACAA--TAGATGTAAATCAAACCATCATGATGTACACCTTGAGCATCTACAGTGAT CTACATC-AATGATTTCTCAATAAAACTACAAAAGACGTTTTTT-------AAAACTTTATTTACT---AACCATTCATA AGAATGAAATTTTAG-ATTTTAAA-TGTTTTCTACAAGTTATTATAA >Felis_catus AAACTA--AAGTTCTATGATAAAGCCATGCAAATGAGCTCTTCATTGTGCTT---AGACGTTTATTTGCT---------- -AGAGATGGGGGGGGGGGAGGGGAAT-GGAAGAAGGTGGCCGAAGAGTACAAAATTCCAGTTATA--AGAGAGATGAGTA TTGGGGATGTAATGTG----------------GTTGATGCTGCTCAATGATATACAGGTAGAGTGTTGGAAGAGTGGATC ATAAGAGTTCTTATCACAAGGAGAAATTTGCTTTTTTTCTTTTTTTTTTTANNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------NNNNNNNNNNNNNNN---NNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Equus_caballus AAACTA--AAGTTCAATGACAAAGCTGTGTAACTTAGTTCTGCATTATGATT---GGAAGTTTATTTGCT---------- -GGAAGCGGGGGCATGGGAGGGGACTTGGAGGAAAGTAGTCACAGGGTACAACCTTCCAGTTCTG--AGACAGATGGGTA CCAGGGAGGCAATGATCATTACGATCACTGT-GCTAACACTGCCGCATTGTGCACAGGAAGGTTGCTGGGAGGGTGGATC TGAAGAGTTCTCATCACAAGGAGAAATTT--TTTTTCTTTTCTTCTTACTGTATTTTTGTGAGATGATAG--ATGTTAAC TAGACCTATT---ATAATCATTTCACAA--TATACGTGAAGCAAACTATCACACTGTACACCTTGAACTTATACAGTGAT GTATGTCGAATTATTCCTTAATAAAACTGGAAAAAATATTTTTAAAA----AGAAGTTTATTTGCT---TATCATTCATA AGGATGAAATTTTAG-ATTTTAAA------------AGTTATTATAA >Ceratotherium_simum AAACTA--AAGTTCAATGACAAAGCCGTGTAAATTAGTTCTGCATTATGATT---AGAAGTTTATTTGCT---------- -AGAAGCAAG----------------------------GTCAAAGAGTACAAAATTCCAGTTATG--AGATAGGTGGGCA CTGGGGCTGTAATGTTCTACACGATGACTAT-GCTAACACTGCTGTATGATATAGAGAAAGGTTGTTGGGAGAGTGGATC TTGAGAGTTCTCATCACAAGGAGAAATTTTTTTTTTCTTTTCTTTTTATTGTGTTTTTGTGAGATGCTAG--ATGTTTAC TAGACCTATTGTGGTAATCATCTCACAA--TATAGGTAAAGCAAACCATCATGCTCTACACCTTGAACCTATACAGTGAT GTATGTCAAATTATTTCTCAGTAAAACTGGGAAAAAAATTTTTTAAAA---AGAAG----TTTACT---TATCATTCATA AGGCTGAAATTTTAG-ATTTTAAA-TATTTTATAAAAGTTATTATAA >Sus_scrofa AAACTA--AAGTTCACTGACTAAGCCATGTGAATTAGCTCTGCATTTTTATT---AA-------TTTGCT---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------AATCATTTGTA AAGATGGAATTTTAGCATTTTAAG-TATATTCTCAAAATTATTATCA >Bos_taurus AAGCTG--AAGTTCAATGATTAAGCTGTATAAATGAATTCTGCATTATTATT---AGCAGTTT-TTTGCT---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------AATAATTCTTA AGGATAGAACTTTAG-ATTTTACA-TATTTTCTAAAAGTTCTCGTAA >Myotis_myotis AAACTA--AAGTTCAGGGCTAAAGCCATGTAAATTATTTATGCATTTTGATT---AGAACATCGTTTGGT---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------AATCATTCTTA AGGATGAAATTTCAG-ATTTTAAA-TATTTTCTAAACATTATTATAA >Rousettus_aegyptiacus TAACTA--AACTTCAATGATAAAGACACACGAATTAGTTCTGCATTATGATT---AGAAGTTTCTTTGTT---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------AATCATTCACA AGGATGAAATTTGAG-ATTTTAAA-TGTTTTCTAAAGGTTATTATAA >Uropsilus_gracilis AAACTACACAGCTCAATGATAAAATCATGTACATTAGTTCCACATAATGATT---AGAAGTTTAACTGCT---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------AGTTATTCATA AGGATCAAATTTCAG-ATTTTAAA-CATTTTCTAAAGGTGATTATAA >Sorex_araneus AATCTA--AAGTTTAATGACAAA-GCATGGGCATAAATTCCATGTTATAATT---AGGAGGTTGTTTA------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------AATCATTGATA GGAATGAAATTTTTG-ATTCTAAA--GTTTTCTAAAGGTTGTTATAA >Homo_sapiens AAACTT--AAGGTCAATGATCAAGCCATGTAAATTAGTTCTGCACTGTGGTT---AAAAATTTACTTTAG---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------GACAAATC--- ---CTGAAATTTTAG-ATTTTAAA-AGTTTGCTTAAACT-ATTATAA Dog254_LINE >L1MA9_3END -----------------------------------------------------------------------AGGGTACAA AGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGATC-------TA-ATGTACAGCATGGTGACTATAGTTAATAATACT GTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCACCACACACAA--AAAAATGGTAACTATGTGA GGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAAT-GTATACGTATATCAAAACATCACGTTG-TACA CCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGC--------------------------------- ------------------------------------------------------------------------------- >Canis_familiaris TCATGGCAGATAAAATAGGAAGCTTTGGTAATATGGTAGCCATATCTATC---AAAAGAAAT-AAAAT------------ -----------------------------------TA-------TATATATATAACTTGGTGACTGTATCTACTAGTATT GTACTGTATATTTGAAAGTTGCTAAGACCACAGATCATAAAAGCTATCATCACAAGAATG-AATATTTGTGATTATATGT GGTG-TGG--ATGTTAACTCGACTTACTATGGTGATCACTTTGTAATAATATATAAATATCGAATCATTATGTTATTATA CCTGACATTAA-------------TGTCAATTACATCTC-----------AATAAA---AAAAGT---ACAAATATGCAA AATGAGGAACA-AATAATCTCACGTGG-------------------------------TGTATACAGAACATG----TA >Felis_catus TCATGGCAAATAAAATATGAAGCTTTGGTAATATGGTAGCCATACCTATG---GAAACAAACACAAAT------------ CATTTTAGCAAT--TAAATAAAAAATTTATTAGAATAAAATAAGTA-AAATACAGCATGGTGATTATATTTAATAATACT GCACTATATGTTTGAAAGTTGCTAAGAGCATAGATCTTACAAGTTCTCATCATAAGAAGA-AATATTTGTAATTAAGTGT GGTG-CGA--CTGTTAACTAGATGTACTGTGATGATCATTTTGTAAT-ATATACAGATATTGAAACACTGTATCG-CATA CCTGAAACTAA-------------TGTCAGTTATATCTC-----------AGTTAA---GGAAAT---ACAAATATGCAA AATGAGGAACA-CATAATTCCACACAG-------------------------------TGTACATT-----------TG >Manis_pentadactyla TCATGACAGATGAAATATGAAGCTTTAGTAATATGGTAGCCATACCTGTC---AAAACAAAT----AT------------ -----GAGTTAT--AAAAT----GAGTCCTGGGGATG-------TA-ACATACAGCATGGTGACTATAGTTAATAATACC GTAGTGTATATTCAAAAGTTACTAAG--CATAGATATTAAAAGTTCTCATCACAAGAAAATAAAACTTGTAACTATGTAT G--AATGA--AGGTTAACTAGACTTATTGTGGTGATCATTTTGCAAT-GTGTGCAAATATAGAATCATTATGTTA-CATA CCTGAAACTAATATAA-TGTTATATGCCAATTGTATCTC-----------AATAAAAAACCAAAT---ACAAATATACAA AATGAGGAACA-AATAATTCTACACAG-------------------------------TGTACATAGAACATG----TA >Equus_caballus TCATAGCAGATAAAATATGAAGCTTTGGTAATATGGTAGCCATACCTTTC---GAAACAAAA-----T------------ ---------AAT--AAAAT----GGGTCATGAGGATA-------TA-ATACACAGCACGGTGACTAGAATTAATAATACT GTATTGTATATTTGAAGGTTGCTAAGAGAATAGACCTTAAAAGTTCTCATCACAAGAAA--AAAATTTATAACTATGTGT GGTGATGG--ATGTTAACTAGTCTTATGGTGGTGATCAATCTGCAAT-ATATACAATTATCAAATAATTACACTG-TACA CCTGAAGCTAATATAA-TGTTCTATGTTAATTATATCTC-----------AACAAA---AGAAGA---A-----ATGCAA AATGGGAAAAA--ATAATTCCACATGG-------------------------------TGTACATACACTATG----TA >Ceratotherium_simum TCATGGCAGATAAAATATGAAGCTTTGGTGATATGGTACCCATACCTATC---AAAAGAAATACAAAT------------ ---------AAT--AAAATAACTAAGTCATGGGGATA-------TA-ATATACAGCACGGTGACTATAGTTAATAATACT GTACTGCATATCTGAAAGATGCTAAGAGAGTAGATCTTAAAAGTTCTCAACACAAGAAA--AAAATTTGCAACTATGTGT GGTGATGG--ATGTTAACTAGACTTACTGTGGTGATCAATCTGCAAT-ATATACAAATATCAAATCATTATGTTG-TACA CCTGGAACTAATATAA-TGTTATATGGAAATTATATCTC-----------AATAAAAAAACAAAT---AC----ATACAA AATGAGGAAAA-AATAATTCCACATAG-------------------------------TGTACACAGAATATG----TA >Sus_scrofa TCATGGCAGATAAAATATGTACCTTTGGTAACATGGTAGCCATACCTATC---AATACAAATACAATT------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------AC----ATGCAA AATGAGGAACA-AATAATTCCACACAG-------------------------------CATACACAGAACATGT---AA >Bos_taurus TCATGGCAGATAAAATACGAAGCTCTGGTGATATGGTAGCCATACCTATC---AATACAAACATGGTT------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------AC----ATGC-A AATGAGGGACA-AATAATTGGGCACAG-------------------------------TGTACACTGAACATGTATCTA >Myotis_myotis TCATGGCAGATAAAATATGAAGCTTTGGTAATATGGTAGCCATACCTATC---AAAACAAATACAAAT------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------AC----ATGCAA AATGAGGAACA-AATAATTCTGCATAG-------------------------------CGTATACAGAACGGG----CA >Rousettus_aegyptiacus TCATGGCAGATGAAATATGAAGTTTTGGTAATATGGTAGCCATACCTATC---AAAACAAATACAAAC------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------AC----ATGCAA AATAAAGAACA-AATCATTCTGCATAG-------------------------------GGCACACAGAACATG----TA >Condylura_cristata TCATGGCAGATAAAATATGAAGCTTTGGTAATATGGTAACCATACCTATC---AAAACAAATACAAAT------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------AA----ATGCAA AATGAGGAATA-AATAATTCCACAGGGTAGAAACAGAGCCAAAATCAGCTCCACACCATGGACACAGAACCAA----CA >Erinaceus_europaeus TCATGGCAGATAAAATATGAAGCTTTGGTTATATGGTAGCCATACCTAGC---AA-ACAAAT-AAAAC------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------GT----ATGCAA AATTAGGTAGA-AATAACTTTACCTAG-------------------------------TATACACAGAACATA----TA >Homo_sapiens TCATGGCAGATAAAATAGGAAGCTTTAGTAATATGGTAGCCATACCTATC---AA-ACAAATACAAAT------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------TC----ATGC-A CATGAGGAACA-AATAATTTTGTAGGG-------------------------------TGGACACAGAACATG----TA Dog260_LINE >L1_CARN7_3END -------------------------------------------------------------------------------- -------------ATGTAATGTACAGCATGGNGAATATAGTCAATAATATTGTANTAACNTTGTATGGTGACAGATGGTA ACTAGACTTATTGTGG----TGATCACTTCACAATGTATACAAATGTCGAATCACTATGTTGTACACCTGAAACTAATAT AACAT---TGTATGTCAATTATACTCAAATAAAAAAA------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------ >Canis_familiaris TATGAATCTTTGCTGACTCTCAGAGATAG----AGACAAGAAGGAAGGTA-----AAGACAA---A-TAGAG----ACTA GGGAATGGAT----------CTTAAAAATTTTCATCACAAGAAAAAAAAT--TTATAACTATGTATGGTGGTAGATGTTA ATTAGACTTATTGTGG----TGATCAC-----------------------------ACGTTATATACCTAAAACTAATAT GATGT---TATATGTCAAGTATACCTCAAT----------AAAAA-----AATAAA-TAT---TGAAGTAGAGAAATAT- ---GAGAGA-TGAGAAGGGGAGAG--------------------------------------------GAAGGGAGAGGA ----------TGGGAGGGGAGATA-GAATGAGAA---------------------------------------------- ----------TCTGAGAGACACT-TTTGTG >Felis_catus TGTGAATATTTGCTGACTCTGAGAGAGAG----AGACAAGGAAGGAGGTA-----AAGACAC---A-AAGAG----ACAA GGGAGTAGAT----------CTTAAAAGTTTTCATCACGAGAAAAAA---TCCTGTAACTGTGTGTGGTGATAGATGTTA ACTAGACTTTTTGTGG----TGATCAT-----------------------------ATGTTATATACCTGAAACTAAT-- -ACGT---TACATGTGAAGTATATCTCAATAAA-------AAAAGAAAG-AAAAAA-TAT---TGAGATAGAGAAACAT- ---GAAAGA-TGAGAGGGAGAGAGGTTGATGAAAAGATAGAGAGAGTGGAGGTGAGAGGAGGAAAAAGGAGGGCAGGAGA AGGGAGCAGAGGGAAGGGGAGAGA-CAATGAGAA---------------------------------------------- ----------CCTGAGAGACACTTTTTGTG >Manis_javanica TATAAATATTTGCTAACTCACAGACAGACA-------AAAGAGGAAGGTA-----AAGAAAC---A-AAGAAAGAGATGA GAAAGTAGAT----------CTTCAAAGTTCTCATCACAAAAAAAAAAGTT-CTGTAACTATATATGGTGATGGATGTTA AGTAGATTTCTTGTGGTGATTGATCATTTTGCAATACATACAAATACCGAATCATTATATTGTACACCTGAAACTATTAT AATGT---GTTATGTCAGTTATACTTCAATAA--------ACAAAAAAGAGACTTGAGAC---TGAAGT----------- ----AGAGA-TGAGAAGAAAAGAG------------------AGGGTGAGGTTGAGAGAG--------GAGAGCAGAGG- ----------ATGGAGGTGGGGAA-GAATGAGAA---------------------------------------------- ----------CCTGAAAGGATGT--CTGTG >Myotis_myotis TATGAATATTTGCTAATTCTGAGAGAAATG---GGACATGTAGGGAGATA-----AAGACAT---A-AAGAA-----CAA GAGAATAGTT----------CTT-AAAATTTCTATCACAAAAAAAG------TTGTAACTATGTATGGTGATGAATGTTA ACTGGACTTACTGTGG----AGATCATTTCATAATATATACAAATAATGAATCATTACATTGT--ACCTGACTCTAATAT GCTGCTAGTATATGTTAATTATACCTAA------------ACAAAAAAGAGACAAA-GAT---CGAGGTAAAGAAACAT- ---GAGAGA-TGAGAGG-AGAGAG----------------------TGAGGTCCAGAGAGGGAGCGTGGAGAGCAAAGAA G---------AATAGGAGAAGAGA-GGATGGGAA---------------------------------------------- ----------CCTGAGAGGCACTATTTGTG >Rousettus_aegyptiacus TATGAGTATTTGCTAATTCTAAGGATG------GAGCATGGTGGGGGGTAGAGCAAAGAAAC---A---GAG----ACAA GAGAGTAAAT----------CTTAAAAGTTCTCATCACAAGAAAGAAGAATTCTGTAATTATGTATGTTAACAGATGTTA ACTAGATTTATTGTGG----TGATCATTTCACAATATATACAAATATGGAATCATTACATTGTACACTTGAAACTAAT-- -ATGT---CATATGTCAATTATACGGCAATTAAA------AAAAGAGAGAAACAAA-GAC---AGAGGT----------- ----AGAGA-TGAGAGGAGAGGAA------------------------GAGCAGAGAGGAGAGGAGAGGAAGGAAGAGGA -------------GGAGGGAGTGA-GAATGAGAA---------------------------------------------- ----------CCCAAGAAACACTATTTGTG >Sus_scrofa TATGATTATTTGCTAATTCTAAGAAAGAGATACAGACAAAAGGGGAGATA-----AAGATAC---A-AAGAA------AG AGACAAAGAT---------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------TAAAGTAGAGAAACAT- ---GAGAGA-TGAGAAAGGGAGAG------------------ACAATGAAAAGAAGAGGAAAAAAATCAAAGGGGGAAGA AG--------GGGAAGAGAAGAGA-GAA--AGAA---------------------------------------------- ----------CCTGAGAGACACTTGGTGTG >Tursiops_truncatus TATGAATATTTGCTACCTCTAAGAAAGAGATACAGACAAGAAGGGAGTTA-----AGTGTAC---A-AAGAA------AG AGACAAAGAT---------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------TGAAGTAGAGAAACAT- ---GAGAGA-TGAAAAGGAGAGAG-------------------AAGTGGAAGGAAGAGAAGGAGAAAAAAGGAAAAGGGA AGGG------AAGGAGGGAAGAGA-GAATGAGAA---------------------------------------------- ----------CCTGAGAGACACT--GTGTG >Equus_caballus TATGAATATTTGCTAACTCTAAGAGAGAGAGAGAGACAAGGAGGGAGGTA-----AAGACAC---A-GAGAC------GG AGACGAAGAT---------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------TGAGGT----------- ------AGA-CGAGAGGGAGAGAA--------------AGAGAGGATGAGGCTGAGAGAGGGAACGTGGAGGGGAGAGAA GGAAA-----GGGAAGGGGAGGGA-GAATGAGAT---------------------------------------------- ----------CCTGAGAGACACTTTTTATG >Ceratotherium_simum TGCGAGTACTTGCTAACTCTAAGAGAGTGAG--AGCCAAGGAGGGAGGTA-----AAGACAC---A-AAGAA------AG AGACGTAGAT---------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------TGAAGC----------- ------AGA-TGAGAGGGAGGGGG--------------AGAGAGGGTGAGGTTGAGAGAGGGACAGTGGAGGGGACGGAA GGAGA-----GTGGAAGGGAGAGA-GAATGAGAA---------------------------------------------- ----------GCTGAGAGACACTTTTTGTG >Condylura_cristata TATGGACATTTGCTAACTCTACGA-------------------GGGTGTA-----AAGACAC---A-AAGAA-------- -----GGTCT---------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------CACGGA----CATCAT- ---GAGACA-TGAGAGCTGGGGCA-------------------------------------------------------- ----------GTTGCAGGGAGAGA-GAGAGGGGA---------------------------------------------- ----------CCGAAGTGATGCC--CTGTG >Erinaceus_europaeus TATGAACATTTGCTGACTCTGAAAA------------------GGTGGTC-----AAGACAC---ACAAGAA------AG AGGCAAAGAT---------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------TGAGGT----------- ----AGAGAGTGGGAGGAAAGGGA-------------------------------------------------------- ------------GGTGGGGAGAG--CAGGGAGAA---------------------------------------------- ----------CCAGAGAGACA----TGGAG >Homo_sapiens TATGAATATTTGCTAACTCTAAGAGGGAGCCAGAAACAAGGAGGGAGGTA-----AATACCC---A-AAGAA-------A AAAACAAGAG---------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------TGAGGTAGAGAAACATG GAGGAGAGAGTGAATGGGAGAGAG------------------AGAGTGAGAGAAGGAGTGGAGGAGTGGGGGTGAGAGAG AGAG------AGAGAGAGAAGAAATAGATGAGGGAAGACAAAAAGAAAGAGAGAAAGAGAGATGAGAGAGAGGAGAAGAG AAAATGAGAACCTGAAAGACAGT--TTGTG Dog261_LINE >L1MA9_3END -------------------------------------------------------------------------TTTTTCC AGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATAT-ACGTATAC ATTGTGAAATG-------------------------------------------------------------------- >Canis_familiaris ATTGGTAGGTCTCCTTCTTCCCCAAATTAAGAATATGCTGATAGGAATGAAAA---TTATACGTTTT---TTTCCCTTTC AGTTTTATTGAGCTATAATTGACATA-TAGC--TATATATATTTAAAGCATACAGCATAATGACTTGAGAGGAA------ --------------ATACAGCTTTT---AGAAGTCAGATTAGTTTGCAACTGAATCATCTA----AAAAGTGTATGGTA >Felis_catus ATTGGCAGGTCTCACTGTTCCCGAAATTAAGAATATGCTGATGGGAATGAAAA---TTATATGTTTT----TTCTTCTTC AGTTCTATTGAGCTATAATTGACATA-CAGCATGATATATATTTAAGGTGTACAGCATAATGACTTGAGAAGAG------ --------------ATATAGCTTTT---AGAATTCAAATTTGTTTGCAACTGCATCATCTATGTCAAAAGTATACGGTA >Manis_pentadactyla ATGGGCCGATCTTGCTCTTCCCCAAAGAAAGACTATGCTGATGCGGATGAAAA---T-ATAGTATTT----TTTCCTTTC AGTTTCATTAAGCTATACATGACATA-CAGAACTGTGTAAGTTTAAGGTGTACAGCAAAATTATTT-----GAA------ --------------TTACAGTCTTT---AGAATTCAGGTTAGTTTGCAACGGAACCACCTGCATCAAAAGCATACAGTA >Equus_caballus AGTGGCGGGTCTCACTCTTCCCCAAATTAAGAATACGCTGATGGGAATGAAAA---TAGTTTTTATT-----TTTCTTTC ATTTTTAT-----TATAATTGACATT-CAGCTCTATATAAGTTTAAGTTGTACAGCATA---ACTTGAGAGGAA------ --------------TTATTGTTTTT---AGAATTCAGATTAGTTTGCAACTGAATTGCCTATATCAAAAGTATTCAGTA >Ceratotherium_simum AGTGGCAGGTCTCA-TCTTCCCCGAATTAAGAATATGCTGATGGGAATGAAAA---CTGAAGTTTTT-----TTCCTTTC ATTTTTATTAAGCTATAATTGACATT-CAGCTCTATATAAGTTTAAGGTGCACAGCATAATGACTTGAGAGGAA------ --------------TTATTGTTTTT---AGAATAAGGATTTGTTTGCAACTGAATTGTCTATATCAAAAGTATTTAGTA >Sus_scrofa ATTGGCAGTTCACACTCTTCCCCAAATTAAGAATATGCTGATGAAAATGAAAA---TTATAGCCTTT------------- -------------------------------------------------------------------------------- ----------------------------AGAATTCAGGTTAGTTTG-AAATGGATCATCCCCATCGAAAGAATACAGTA >Bos_taurus ATTGGCAGTTCATGCAGTTCCCCAAATTAAGAATATGCCAACAAAAATAAAAA---TTACAGCCTTT------------- -------------------------------------------------------------------------------- ----------------------------AGAATGAAGATTAGTTTACAAATGAATCATTCATATCAAAAGAATACAGTA >Myotis_myotis TTA------------TCTTCCCCAAACTAAGAACACTTCAATGAGAATGAAAA---TTATAGTTTTG------------- -------------------------------------------------------------------------------- ----------------------------AAAATTCGTATTAGTTTGCAACTGAATTGTCCAAATAAAAAGTATACAGTA >Rousettus_aegyptiacus ATTGTTAGGCCATACTCTTCTCCATACTAAAAATACTCTAATGGAA-TGAAAA---TTATAGTTTTT------------- -------------------------------------------------------------------------------- ----------------------------AGAATTCATATTAGTTTGCAACTGAATTGTCCAAATAAAAAAGATATAGTA >Condylura_cristata ACTGGCAGCCCATGGTCTTCATTCAACTAAAA--------ATCGGAATGAAAA---TTAGAATCGTT------------- -------------------------------------------------------------------------------- ----------------------------GGAATTCAGATTTTCTGGCAAACGAATCAACAATATGAACGGCATGCAGTA >Erinaceus_europaeus CTGTGCAGGTTCTGCCATTCCACCA-----GAACACACTCATGGGAATGAAAA---TTACAGCTTTT------------- -------------------------------------------------------------------------------- ----------------------------A-AATCCAGATTAGTTTGCAACTAAATCATCCATGTCAAAAGCATCCCATC >Homo_sapiens ATGGACAGGTTATGTTCTTTCCCAAA---GGAATACGCTGATGGAAATGAGAA---TTATAGTTTTA------------- -------------------------------------------------------------------------------- ----------------------------ACAATTCATGTTAGTTTGCAACTGAATTGGCCACATCAAAAGTGTACAGTA Dog264_LINE >L1MA9_3END -------------------------------------------------------------------------------- -----------------ATCAAAAAGACAGAAGATAACAAGTGTTGGCGAGGATGTGGAGAAAAGGGAA---CCCTTGTA CACTGTTGGTGGGAATGTAAATTGGTACAGCCATTATGG-AAAACAGTATGGAGGTTCCTC--AAAAAATTAAAAATAGA ACTACCATATGATCCAGCAATCCCACTTCTGGG---TATATATCCA---AAGGAAATGAAAT-CAGTATCTCGAA-GAGA TATCTGCACTC--CCATGTTCATTGCAGCATTATTCACAATAGCCAAGATATGGAANCAACCTAAGTGTCCATCGACGGA TGAATGGATAAAGAAAATGTGGTAT---------------------------------ATATACACAATGGAATATTATT CAGCCTT-AAAAAAGAAGGAAATCCTGCCATTTGTGACAACATGGATGAACCTGGAGGACATTATGCTAAGTGAAATAAG CCAGGCACAGAAAGA---------CAAATACTGCATGATCTCACT--TATATGTGGAATCTAAA-------AAAGT---- ---------------------CAAACTCATAGAAGC-AGAGAGTAGAATGGTGGTTGC----CAGGGGCTGGG------- --GGGTGGGGGAAATGGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGATCTA ATGT-----------------------ACAGCATGGTGACTATAGTTAATAATA-CTGTATTGTATACTTGAAATTTGCT AAGAGAGTAGATCTTAAGTGTTCTCACCACACACAAAAA----AA-TGGTAACTATGTGAGGTGATGGATATGTTAATTA GCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTA TTTGTCAATTATACCTCAATAAAGCTGGAAAAA----------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------- >Canis_familiaris GGAGGTTCTTAACCTCCTAATAAACACCTGTGGAT--------GGAATGTCTGAGGTGGTCTTTT---AAAACAGTAAGA AGAAAGAAATCGAA--------------GTTCAGTAACAAGTGTTGGTGAAGATGTGGAGAAATAGAA----CCCTTGTG CATTGTGGGTGGGAAT------TGGTGCAGCCACTTTGG--GAGCAGTATGGACACTCCTCAAAAAAAATTTAAAAACCA ACAACCATATGATCCAGCAAA---ACCTCTGAG---TACTTACTCATCTGAGGAAATGGAAA---CTAACTTGCA--GAA TGCATGCACTC--TCATGTTCATTACAACATTATTTACAATAGTCAAGATATGGAAGTATCC-AAGTGTCCGTAGATGGA TGACTAGATAAAG-AGATGTGGTGT---------------------------------CTACATGCAATGGAATATTACT CAGCCAC-GAGCA--AAGGAAATCTTGCCATTTGTGACAACATGAATGGACGTTGAGGGCGTTCTGCTAAGTGAGATAAG TCTGACAAAGAAACACTATGAGATCATAAACCGTATGATCTCACT--TATATGTGGAATCTTAA-------AAAA---AA A-----------TTAAAAAGCCAAATTCATAGATAC-AGAAAACAGATGGATGGTTGCTTGTCAGAGGTGGGT------- -TGGGAGACACAAGATGGGTGAAGGACGTCAAAAGGTACAAAGTTCCAATTAT--AAAATGAATAAGTCCTGGGGATATA ATGTGGGGATATAATTATATCCTGGGGATATAATGGTGGCTATAATTAATGATA-CTT-ATTGTATATTTG-TATATGCT AA--GAGTAGATCTTAAAAATTCTCATTACAAGAAAAAAACACACACTGTAACTAAATATGATGATGA--AGGTTAA--- GACTTACTGTGGTGATCATTTCACTAGGTACATCAATATTGAATCATTATATTGTATACCTGAGACTAATATAA-GGTCT TATGTCATATATATATATATATATATATATATATATATATATATATAATCATGTTTACATATATATATATAATTAGATTG GTGAAAGAAAAGAAGGAAGAAAGAAA-------GAAAGAAAGAAAGAAAGCAAACGAAC---ATGTCCCCAGCACTATGA TACTGCGATG-TCTGGGCACTGGGCTGGGTG---CTTCCAGAAGCATCGGTTCCCACAG >Felis_catus GTAAGTGCT--------CACTAAGCATCTGTTGATGGAC----TGAATGTCCAAGGTGATCCTTC---AGAACAATAAAA AGAAAGAAATTGAA--------------AGTCAGTGACAAGTATTGGGAAGGATGTGGAGAAAAGGGCA---CCTTCGTG CCCTGTTGGCGGGAATGTAAATTGGTGCAGCCACTGTGG-AAAACAGAATGGACACTCCTT--AAAAAGTGAAAGCCATA ATGAACACATGATCGAGCAAGTCCTCTCCTGGG------------------GGAAATGAAAA---GTAACTTGAA--AAA TATATATCCTC--CCATGTTCATGACAACAATATTTCCAATAGTCAAGACATG----------AAGTGTCCACAGATGGA TGAATAGATAAAGAAAATGTGGCAT---------------------------------ATCTACGCAATGGAATATTACT CAGCCAT-AAAAA--AAGGAAACATTGCCATTTGGGACAACATGAATGGAACTTGAGGGCACAATGCTAAGTGAAATAAG CCTGACAAAGAAAGA---------CAAATAGCATATGATCTCACTTGTATATGTAGAATCTTTA-------CAAATACAA A-----------GCTAAACACCAAACTCATAGATAC-AGAGAACAGATTGGCGATTGCTTTTTAGAGGTGGGG------- -TGGGAGACACAAAATGGGTGAGGGAGATCCAAAGGTACAAAGTTCCAGTTAT--AAAATAAATGAATCCTGGAGATGTC ATGT-----------------------ACAACGCGGTCACCATAATGAGTAATA-CTATATTGTATATTTG-TATATGCT AAGGGAGTAGATCTTAGAAGTTCTCATTACAAGAAAAAA----A--TGATAACTAAATACGATGATTA--ACGTGAACTG GATTTATTGTGGTGAGCATTTCCCTGTGTGTACAAATATTCAGTCATTATGTTGTACACTTGAAACTAACATAG-AGTTT TATGTTGGTTTTATGTATATGTATATATATATATATATACACACACACACATGTATACATATATACATATGTATGTATAT --------ACATACATGTGTGTACAT-------ATACGTGTATACATATGTATANNNNN---NNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Manis_pentadactyla GTAGGTTCT--------TAATAAATATCTGTTGACTGAT----TGAATGTCCAAGGTGGTCCTTT-----AAGAGTAAAA AGAAGGAAACTAAA-----------------AGTAAACAAGTGTTGGTGAGGATGTGGAGAAAAAAGTA---TCCCTAGG CACTGTCGGTGGGAATGTAAAGTGCTGCAGCCACCATGGAAAAACAATATGGAACATTCTC--AAGAAATTAAAAATAGA ACTGCCATATGATACAGCCATTCCACTTCTGGGTTTTTTTTTTTCA---AGGGAAACAAAAA-CACTGTCTCAAA-AAAA TATATGCATTCATTCATGTTCATTGCAGCATTATTTAAAATAGCCTAGACATGGAAACAACCTAGGTGTCCATGGATAGG TGAATGGATAAAGAAAATATAGTAT-------------------------------ACGTATGTGCAGGGGAATATTATT TGGCCAT-AGAAAAGAAGGAAA-CTTGCCATTTGTGATGACATAGATGGATGTTGAGGGCATTATGCTAAGTAAAATAAG TCAGATAGAGAAAGA---------CAAATACAGTGTGATCTCACT--TACATGTGGAACCTAAAACAAATAATTTTAAAA A----------TCTTAAAAACCAAACTCATAAATACTAGAGAACAGACTGGTGGTTGC----TTGGAGTGGGAGGTGAAG CAGGGATGGGTGAAATGGGTGAAGGGAGTCAAAACGTACAAACTTCCAGTTAT--AAAATAA----GTCATGGGCATGTA ATGT-----------------------ATAGCATAGTGACTGTAGTTGATAAAA-TTGAAT-CAATAGTTG-CACA--CT ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNN--NNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNN-------NNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Equus_caballus GTAGGTTCT--------CAATAAGTATCTGTTGGCTGAT----TAAGTTTCTGAAGTGGTCCTTT---AAAAGAGTAAAA AGAAGGAAACTAAA--------------------TAACAAGAGTTCATGAGGATGTGGAGAGAAGGGAA---CCCTCGTA CACCGCTGATGGGAATGTACATTGGTGCAGCCAGTATGG-AAAAGAGTATGGAGGTTCCTC--AAGAAATTAAAG-TAAA ACTACCACATTATCCAGAAGTTCCACTTCTGGA---AATTTATTCA---AAGGAAATGAAAA-CACTAACTCAAA-AAGA TATATGCATTC--CCATGTTCACTGCAGCATTATTTACAATAGCTGAGACATGGAAGCAACGTAAGTACCCATAGATGGA TGAATGGATAAAGAAAATATGACATATATAAATATGACATACACACACGTGCACGCACACACACACAATGGAATATTATT CAGCCAT-AAAAAATAAGGAGATCTTGCCATTTGAGACAACATAGATGGATCTTGAAGGCATTATGTTAAATGAAATAAG TGAGACAGAGAAAGG---------GAAATACCATATGATCTCACT--TATATGTGAAATCTAAAACAAACCAAAAAAAAA T-----------TTTTTTAATGAAACTCACAGATAA-AGAGAACAGATTGGTGGTTGC----CAGAAGTGAGGAGTG--- -GAGGGTGGGCGAAATAGGTGAAGGTGGTCAAAAGATACAAACTTCCAGTTAT--AAAATAA----GTCCTGGGGATGTA ATGT-----------------------ACAGAATGCTGACTATAGATGATAACATTTGCATTGTATATTTAAAATTTGCT AAGATAGTTGATCTTAAAAACTCTCATCACAAGAAAAGA----GATTTGTAACTAAGTGCGGTGATAG--ATGTTAACTA GACTTATTGTGGTGATCGTTTTGCAATATATACAAATATCTAATCATTACGTTGTATGCCTGAAACTAACATAA-TGTTA TATGTCAATTATATCTCAATAAAAATATGTATATTAAAAAA--------------------------------------- ------------AATTAAGTTGATTG-------GTTAAAAAAAGAAGAAAGAAACTAAC---ATGAATCCAACACTA--- -----CGGCC-TCTGGGCTCTGGGCTCGTG----CTTCA-----------GCCCCACAG >Ceratotherium_simum GTAGGTTCT--------CAACAAATATCTGCTGACTGAT----TGAATTTCTGAGGTGATCCTTG---AAAAG------- --AAGGAAACCAAA--------------ACTAAATACCAAGTGCTGGTGAGCATGTGGAGAAAAGGGAA---CTCTTGTT CACTGTTGGTGGTAATGTAAATCAGTGCAGCTGCTATGG-AAAACAGTATGGAGGTTCCTC--AAAAAATTAAAA-TAGA GCTACCACAGGATCTAGCAATCGCATTTCTTAG---TGTTTATATG---AAGGAAATGAAAA-CACTAGCTCAAA-AAAA TATATACACTC--CCATGTTCGTTGCAGCATTATTGACAATAGCCAAGATATGGAAACAACCTAGATGTCCATAGATGGA TGA----ATAAAGAAGATGTGATAT---------------------------------GTATATACAATGGAATATTATT TAGCTGT--------AAAAAGATCTGGCCATTTGCAACAACATGGATGGAACTTGAGGGCATTATGCTGAGTGAAATAAG CCAGATAGAGAAAGA----------CAGTGCTATATGATTTCATT--TATATGTGGAAGATAAA---AAACAAAATACCA AAACATTTTTTTTTTTAAAACTGAACTCAGAGATAC-AAAGAACAGATTGGTGGTTGC----CAGAGGTGGCA------- -TGGGG--------ATGGGGGAAGGGGGTCAAAAGGTACAAATTTCCACTTAT--AAAATAAAT--GTCATGCGGATGTA ATGT-----------------------ACAGCATAGTGACTATAGATAATAATA-TTGTATTGTATATTTAAAAGTTGCT AATGGAATAGATCTTAAAAGTTCTCATCCCAAGAAAAAA----AATTTGTAGCTATGTGTGGTGATGG--ATGATAACTA GACTTACTGTGATGATTATTTTGCAATATATACAAATATCTAATCATTAAGTTATATACCTGAAACTAATATAA-TGTTA TATGTCAATTATACCACAATAAAAATATATATGTTAAAAAA--------------------------------------- -----------ATAGGTTTATTAGTT-------AAAAACAAAAAAAGAACGAAAGTAAC---ATGTCTCCAGCACTG--- -----TGGTG-TCTAGTCACTGGGCTTGGTG---CTTCA-----------GTCCCATAG >Desmodus_rotundus GTAGGTTCT--------CAAGAAACGTCTGTTAGCTGAT----TGAATGTCTGATGTAGTACTTT---GAACGAGTAGAA GAAAGAAA-CTAAA--------------ACTAAGTGACAAGTGCTGGCGAGGATGCAGAGAAAAAAGAA---CACTTGTG CACCGTTGGTGGGAATGTAAATTGGCGCAGCCACTGTGG-AAAACGGTATGGAGTTTCCTC--AAAAGGTCAAAAATAGA ATTACCATAGGATCTAACAATTTCACTTCTGGG---TATTTATCTG---AAGGAAACAAAAAGCACTCATTCGAA-AAAA TGTCTGCACCC--TTCTGCTCTTTGCAGCGTTGCCTATTACAGCCACAGCGTGGAAACAATCTGAATGTCCACGGANNNN NNNNNNNNNNNNNNNNNNNN--------------------------------------NNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNN-----------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNN-----------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNN----------------------------------------------------------------- --------NNNNNNNNNNNNNNNNNN-------NNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNN--- -----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Pteropus_vampyrus GTAGGTTCT--------CCATAAATATCTTTTGATTGATTAAATAAATGTCTGATGCGGTCCTTT---GAAAGAGTAAAA AGAAGGAAACTAAA--------------ACTGAATGGCAAGCATTGTCAAGGATTTGGAGAAAAGAGAACAGCCCTTATG CATTGTTGGTAAGAATGCGAATTGGTACAGCCACTATGG-AAAACAGTATGAAGATTCCCC--AAAAGATTAAAAATAGA ACCACCATATGATCCAGCAATTCTATTTCTGGG---TATTTATCTG---TAGAAAACAAAAA-CACTAACTTGAATAAAA TATCTGCACTT--CCACATTCATT-CGCTATTATTTATAATAGCTAAGACATGGAAACAACCTAAG----------AGGA TGAATGGATAAAGAAAATGT--------------------------------------ATATATACGATGGAATATTATT CAGCCATAAAAAAAGAAAAAAATCTTGCCATTCATAACAACATGGATGGACATTGAGGGCATTGTGCTAAGCAAAATAAG TC----AAAGAAAGA-----------CATACCATATGATTTGATT--TATTTGTTAAATGAAAA-------AAAAAAAAA G---------------------AAAACCATAGATAC-ACAGAATACATTGGTGGTTGC----CAGAGGC-AGGAGCG--- -AGGGTAGGGCAAAATGGGTGAAAGTGGTCAAAAGATAGCAACTTCCAGTTTT--AAAATAA------CTAAGACATGCG ATAC-----------------------ACAACACAGTGACTGTAGTTAATAATA-CTGCCTTGCATATTTTAAAGTTGCT AAGAGAGTAGATCTTAAAATTTCTCATCATAAGAAAAAA----AA--TGTGACAAAGTGTGGTGCTGG--ATGTTAACTG GACTTACTGTGGTGATCGTTTTGCAATATATATGAATCTTGAATCATTATGTGGTAC-TCTGAAACTAATGTAA-CGTTA CATGTCGATTTTTTA----------------------------------------------------------------- --------AATTAGGTAATTGGGTTT-------AAAAAAATAAAAGGAC--------AC---ATGTATCCTGCACTA--- -----CAATG-TCTGGGTGCTGGGTGAGGTA---CATCACATAT--TCCGTCCCCATAG >Sus_scrofa GTAGGTTCT--------CAGTAAATATCTGTTGAC--------TGAATATCGGAGGTGGTCCTTG--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------AAAAGAGTAAAAAGGCGGAAACTAGC---ATGT--CCAGCAGGG--- -----CGACG-TCTGGGCATCAGGGTAGGG----CTTTCCATAT--TCAGTCTCCACCG >Bos_taurus GCAGGTTCT--------CAGTAAGTATCTGTTGACTGAC----TGAATGTCTGAGGTGGTAAAAA--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------GAAGGGAAGAGTAAAAAGAAGGGAATTGAC---ATAT--CCAGCACAA--- -----TGATG-TCTGGGCACCCGGCTAGGG----CTTTATGTAT--TCAGTCCCCACAG >Condylura_cristata GTA-GTTCT--------TCATAGATAGCTGTTGCCTGAT----TGAAT-TCCAAGATAGTTCTTT--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------GAAAGCGGAAAAAGAAGGAAACTAAT---ATGTA-CCAGCATTA--- -----TGAAG-TCTGGGTGGTGGGCTGGGTACATCTTCACGTAT--TCAGTTCCCACAG >Erinaceus_europaeus GT---TTCT-----------TGAGTATCTGTTGACTAAC----TGAACGTCTGAGGCATCCATTT--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------AAAAGATAAAAAGAAGGAAATCAAC---TGGCACCCAGCACTA--- -----CAGTA-TCTGGGCACAGAA-TAGGTAATTTTTCATGTAT--TAAGTCCCCACAG >Homo_sapiens GTACATTCT--------CAATAGATATCCGCTGACTGAT----TTAATGTCTGAGGGGATTCCTT--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------AAAAGAGTAAAAGGAAGGAAACTAAC---ATGTAT-CAGCACTA--- -----CAATGACCTGAACCCTGGGCAAGGTG---CTTCACATAT--TTGGTCCCTACAG Dog283_LINE >L1_CARN7_3END -------------------------------------------------------------------------------- -------------------TTTTTTTATTTGAG-TATAATTGACATACAATGTTATATTAGTTTCAGGTGTACAACATAG TGATTCGACATTTGTATACATTGTGAAGTGATCACCACAATAAGTCTAGTT-ACCATCTGTCACCATACAANGTTANTAC AATATTATTGACTATATTCNCCATGCTG--TACATTACATCCCCATGACTT----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------- >Canis_familiaris TTCATGGAAAAGCTGC-TATG----TGTAAGATATTTAATGGGCATGCAAGAAAGATAA---AAGA-----------ATT ACTAAGGCTTGTCCTT----TTTTT--ATTGAGGCACAACTGGCATGTAACATTATATTCGTTTCAGGTATACAACATAA TGATTCAATATTTGTATATATTGCAAAATGATCATCACAGTAGGTCTAGTTAAACATCCATCACCACATATAGTTA-CAG AATTTTTT--------TTCCTTGTGATGACTACTTTT------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -AAGATCTATCTAAAGCTTATCCTT---GGCCTC-AAAAAAGTGTTTGTGATCTAAGGAAAAA----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------CAAAGGTAAAGAAATG >Felis_catus TTCCCTGTGCAACCAC-TATG----TGTAAGA---CTAACGGACATGCTAGAAAGATAA---AAGA-----------ATT ACTGAGGCTTGTCCTT----TCTTT--ATTGAGGCATAATTGACCTGTAACATTATATCAGTTTCAAGTGTACAACTTGA TCATTCAATATTTGTATATATTGCAAAATGATCACTC---TAAGTTTAGTT-AACATCCACCACCGTATACAGTTA-CAG AATTTTTT--------TCCCTTGTGGTGACAACTTTT------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -AAGATCTATCTAAAGCTTACCCTC---AACTTC-AAAAGAGTGTTTATGATCTAGGGAAAAC----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------AAATGTAAAGAAATG >Manis_pentadactyla TTCACTAAGCAGCTTT-TATGTACATGTAAGA---CTATTGGGCCTGCTGGAAAGACAA---AATA-----------ATT TCTAAGACT---CCTT----TTTTTCTTTTTTGGTATAACTGACATATAACATTATGTTACTTTCATGTGTACAGCACAA TGATTTGATATTTGTATATATTTTGAAATGTTCACCACAATAAGTCTAGTT-AACATCTGTCACCATACATAGGTA-TAG AATTTTTT--------CTCT-TGTGATGACAACTTTT------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -AGGATCTATGTAAGGCTTGTCCTT---GACCTCAAAAAAAGTGTTTGTGATCTAGAGAAAAA----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------AAATGTAAAAGAATA >Sus_scrofa TTCACTGAGCAACTGCTTATG----TGTAAGA---CTAATGGGCATGCTAGAAAGGTAA----AGA-----------ATT ACTAAGGCTTTTCCTT----TTTTTAAATTGAGGTACAGTGGACATAT-------TATTAGTTTCAGGTGTACCGCATAA TGATATGATATT-GTATATATCATGAAATGATCACCGCAATTAGTCTTGTT-AACATCCATTACCACACATAGTTA-CAG AATTTTTT--------TTCT-CATGGTGACAACTTTT------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -AAGATCTATCTGAGACTTACCCTT---GACCCC--AGAGAGTGTTTGTGATCTAGAGAAAACAATATAAAGAAAATTGG CAAAGGAGCCTGCTCTGGCACAAAGGGATCAGTGGCATCTTGGGAGGGCTGGGACACAGGTTTGATCCCTAGCCTGGCAC AGTCCGTGGGTTAAGAATCCGGCACTGCTGCAGCTGCAGCTCAGGCTGCAACTGTAGCTTGGATCTGATCCCCGGTCCAG GAACTCTATATGCTGCAGGGTGGCCAAACAAAGTGAAAGGAAATG >Bos_taurus TTCACTGATCTGC--A-TATG----TGTAAGA---CTAATGGGCATGCTAGAAAGATTA---AAGAATTATTACAGAATT ACTAAGTCTTCTCCTT----TTTTAAAATTGAGGTATAATTGACATATACCATT------------GACAGACACCATAA TGATTTGATTTTGG--TATGTTATAAAATGATCACCACAGTAAGTCTAGTT-AGCATTCAATACCACATGTAGTTA-CAG ATTTTTTT--------TTCC-TATGATGACAGCTTTT------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -AAAATCTATCTAAGGCTTATCCTT---GACCCC-AAAAGAGCGTTTGTGACCTAGAGAAAAC----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------AAAGGTAAAGAAATG >Equus_caballus TTCACCGAGCAGCTGC-TGTG----TGTAAGA---CAAGTGGGCAAACTGGAATGATAA---AAGA-----------GTC AATAAGACTTATCCTT----TTTTTTTATTGACGTATAATTGACATGTGACA-TATATTAGTTTCAGGTGTGCAACATAA TGATTCAATATTTGCATATATTGCAAAATGATCACCACAATAAGTCTAGTT-AACGTCTATCACCATACATAGTTA-AAG AATTTCTT--------CCCT-CATGGTGACAACTTTT------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -AAGATCTGTCTAAGGCTTATCCTT---GACCTC-AAAAAAGTGTTTGTGATCCAGAGAAAAC----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------GAATGTAAAGACATA >Ceratotherium_simum TTCACTGAGGAGCTGC-TATG----TGTAAGA---CTAATGGGCATGCTGGAATGATAA---AAGA-----------GTT GCAAAGGCTTATCCAT----TATTTTTATTGAGGTATAAGTGACATACAACATTACATTAGTTTCAGGTGTACAACATAA TGATTTGATATTTGTGTATATTGCAGAATGATCACCACAATAAGTCTAGTT-AACGTTCGTCATCATATATAACTA-TAG AATTTTTTTT------TTCTTTGTGATGACAACTTTTTTTTTTCCTGAAGAAGATTAGCCCTGAGCTAATATCTGTGCCA GTCTTCCTCTACTTTGTATGTGAGTTTCTGCCACAGCGTGGCTGACGAGTGGTGTAGGTCCGTGCCTGGGATCCGAACCC ATGAACCCGGGCCGCTGAAGCGGAACGCGCCAAACGTAACCCCTGCGCCGTGGGGCCAGCCCTGTGATGACAGCTTTT-- -AAGATCTATTTAAGGCTTATTCTT---GACCTG--AAAAAGTGTCTGTGATCTAGAGAAAAC----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------AAATGTAAAGAAATA >Myotis_myotis TTCATCAAGCAACTGC-TATG----CAT-AGA---CTAATGAGTATGCTGCAAAGATAA--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -AATA-ATTTCTAACACTTATCCTT---GACCTT-AAAATAGTGTTTGTAATCTAGAGAAAAT----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------AAACATAAAGAAATG >Rousettus_aegyptiacus TTCACTGAGCAGCTGC-TATG----CATAAGA---CTAATGGGTGTGCTGGAAAGATAA--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -AAGAAAATTCTAAGTCTTATCTTT---GACCTC--AAAAAGTGTTTGTGATCTAGAGAAAAC----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------CGATGGAAAGAAATG >Condylura_cristata TTAAACGAGTGGCTGT-TGTA----TGTAAGA---CTAGTGGGCATACTGGGAAGATAA--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -AAGC-ATTAATGAATCTTATCCTT---GACCTC-ATAAAATTGCCTGTGATCTAGAAAAAAC----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------AAATAGGAAGAAAGG >Erinaceus_europaeus TTGACT-AGCAGCTGC-TTTG----TGTAACA---GTAATGGGCTTGCTGGAAAGATAA--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -AAGA-ATTACTTAGGCTTAACCTT---GACCTC-ATAAAAGTGTTTGTGATCTAGAGAAAAC----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------AAATGTAAAAACAAA >Homo_sapiens TTCACTGAGCAGCTGC-TATG----TGGAAAA---CTAATGG-CATGCTGGAAAGAAAA--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -GAATTTTTCCTAAGGCTTGTCCTT---GACCTCAAAAAAAGCATATGTGATCTAGAGAAGAC----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------AAATTTAAAGAAATG Dog284_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------------TGGT ATATATACACAATGGAATATTATTCAGCCTTAAAAAAGAAGGAAATCCTGCCATTTGTGACAACATGGATGAACCTGGAG GACATTATGCTAAGTGAAA-TAAGCCAGGCACAGAAAGACAAATACTGCATGATCTCACTTATATGTGGAATCTAAAAAA GT------------------------C-----------------------AAACTCATAGAAGCAGA-----GAGTAGAA ------------TGGTGGTTGCCAGGGGCTGGGG-----------GGTGGGGGAAATG----GGGAGATGTTGGTCAAAG GGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGTACAGCATGGTGACTATAGTTAATAATACTG TATTGTATACTTGAAATTTGCTAAGA---------GAGTAGATCTTAAGTGTTCTCACCACACACA---AAAAAATGGTA ACTATGTGAGGTGATGGATATGTTAATTAGCTTGA---TTGTGGTAATCATTTCACAATGTATACGTATATCAAAACA-- TCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAA-----TAAAGCTGGAAAAA-------- -------------------------------------------------------------------------------- ------- >Canis_familiaris GTTTGAGAAATGAATATGAGTGAATGAA-----TGTTTTATTT------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------TCTTGGTCT---AAGAGAGGTAGGCTAT------- ----ATATTTAATGGAATGTTATTCAGTTATAAGATAAAATGAAATCTTGCCATTTGTGACAA-----------CTCGAG GGCATTATGCCAAGAATAG-TAAGTCAG----AGAAAGGCAACTGTCCTATAATCTCACTTATATGTAGAATCTAAAAAA AG------AAAAAACAAATGAGAAAAC-----------------------AAGATCATAGATACAGA-----GAACAGAT -------------------------------GGGTTGGGGTAGAAGGTGGGCAGAT------GAGTGAAGA---TTAAAA GGTACAAACTTCCAGTTAT--AAAATAAATAATTCCTAGGGGTGTAATATATAGCATGGTAAGTATAGCTAATA---TTG TCTTGTATATTTGAAATTTGCTAAGA---------GAGTAGGTCTTAAAAGTTTTCACCATTAGAAAA-AAAAATCTGTA TCTGTGTGTAGTAAGGG--ATGTTAACTACACTTAACTATGTGGTGATGATTTCACAATGTATACAAATATGGAATCA-- TTATGTTTTGCATCTGAAGCTAATATAA-CATTATATGTCAATTATATCTACACAG--AAAAAGTGAA-------AAGAG AGGTAGGCCTT---CTAGTGGATA--ATCCACTGGATGTATG-----TCTTTTCCTTCTGTCCTACAGGACA-------- TTTCTGT >Felis_catus GTTTGAGAAATAAATGTGAGTGAATGAATAAA-TGTTTTACTT------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------TCTTGGTTT---AAGAGAGGTAGGCTAT------- ----ATATTTAATGGAATATTATTCAGCCAAAAAATAGAATGAAATCTTGCCATTTGTGATAATTTGGATGAACCTTGAG GGCATTATGCTATGTGTAA-TATATAAGTCAGAGAAAAACACCTGTCATGTAATCTCACTTATATGTAGAATCTAAAAAA AA----AAAAAAAAAAAACAAACAAAC-----------------------AAGATCCTGGAT-CAGATCTTGGAACAGAT CATGTAACAGATAGGTAGTTGCTAGAGGCAGGGGTGGGGGTGGAAGGTGGACAGAAT-----GCGTGAAGAGGGTTAAAA GGTACAAACTTCCACTTAT--AAAATAAATAATTCCTATGGGTGTAATGTACAGAATGGTAACTATAGTTAATAATACTG TATTATTTATTTGAAAGTCGCCAAGA---------GAGTGGGTCTTAAAAGTTTTCATCTTAAGAAAG-AAAATTCTGTA ACTGTATATGGTGTTGG--ATGTTAACTACATTTA---CTATGGTGATCATTTCATAATGTATACAAATATGGAATCATT TTATGTTGTGCACCTGAAACTAATAT----GTTATATGCCAATTATATCTACATTTTAAAAAAGTGGA-------AAAAG ----AGGCTTT---TGAGTTGAGA--ATGTAGTAGATATATG--------------TCTGTCCTACACAACA-------- TTTCTGT >Phataginus_tricuspis GTTTGAGAAATAA--ATGAGCGAATGAA-----TGTTCTATTT------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------TCTTGGTTT---AAGGGAGGTAGCTTAT------- ----ATATTCAGTGGAATGTTATTCAGCCATGTAAAAGAATGAAATATTGCCATTTGCAACAACCTGGATGGACCTTGAG GGTGTTGTGCCAAGTGAAA-TAAGACA-------AAAAACAAATACCTTATGACCTCACT--TCTGTGGAATTTAAAAAA AA------AAAGGAAAGAATACTAAAC-----------AGAC--AAAACCAAGCTCCTGGATGCAGA-----GGACAGGT TG-----------------------------GGGTGGGGATGGGAGGTGGCACAAT------GAGTGAAGGGG-CTCAAA AATACAAGCTTCCAGTTAT--AAAATAAG----TCCTGGGCATGTAATGTGCAGCATGGTGACTATAGTTAATAATACTG CACTGTATATTTGAGAGTTGCTTAGG---------GAGTAGGTCTTAAAAGGTTTCATAAAAAG-AAA-ATAATTCTGTA ACAATATGTTGTGATGG--GTCTTAGCAAGATTCA------TTGTGATCTTTTCATGGTATCCACAAATACCAA---A-- TTATATTGTACTCCTGAAACTAATATAA----TGTGTGTCAATTATATC-----------------GA-------GAGAG AGATAGGCTTT---CAAATTGAGA--ATCTGGAAGATACAGG-----TCTTTTCATCCCATCCTACACA----------T TTTTTGC >Sus_scrofa GTTTGAGAAATGA--ATGAGTGAATGCATAGAATATTTTATTT------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------TCTTGGTTT---AAGAGAGGTATGCTAT------- ----ATAGTCAATGGAACATTATTCAGCCATAAAAAATAATGAAACCATGCCATTTGCAACAACATGGATGGACTTTGAT CATGTTATGCTAA-------TAGGTCAAAC--GGAAAGACAGGTACC-TATGATCTCACTTATATGTGGACTCTTAAATA AA-----------------CAAAAACC-----------------------AAGCTCATGGACACAGA-----AAACATAC ------------TGGTGGTTGTCAGAAACAAGGGTGAGGGTGGGAGGTGGGTGAAAT-----GGGCTAAGGGAGTTAAAA AGTAGAAACTTGGAGTTAT--AAAATAAGTAATCTATGGGGATGTCATGTACAACATGGTGA--ATAGTTAATAATACTA TATTGTATATTTGGAAGTTTATAA-----------GAGTAGATTCTAAAAGTTTTCA-CACATTAAA--ATATTTGTGTA ACAATAC-TGGTGGTGA--ATGTTAACTAGACTTA---CTGTGGTGATTATATCTCAATATACAGAAATATTGAACCA-- TTATTTTATGGTTC-------AATATAA-CATTTTACATCAGACAATC----------TAAAAAAAAA-------AAGAG GGCTAGGCTTT---CAAGTTGAGA--ATCCAGTAGATGTAGG-----TCTTTGCATCCTGTCCTGCCCAGCATTTTTTTT TTTTTGT >Bos_taurus GTTTGAGAAATGA--AAGAATGGTAGAATGAA-TGTTGTATTT------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------TCTTGGCTT---AACAGAGGTAGGTGGT------- ----ATATTCAATGGAATATTATTCAGCCGTAAGAAGGAAGGAAGCCTCGCCGTTTATAACAATATGGATGGACTGTGAG GGTATTATGTTCAGTAACGCTAAGTCAG----AGAAAGACAGATA-CATATACCCTCACTTGTGTGTGGAATCTAAACAA AC---------------------AAGG-----------------------AAGCTCATGGACACA-------GGACAGAT ------------TGGAGGTTGCCAGAGGCAAGGATATGGGTGAG-AGTGGATGAAGTGTGCTGGGGGAGGGGGTTTACAA AGTATCAGCTTGTAGTTAG--AAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNN-----------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNN--NNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-- NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------NNNNNNNNNN-------NNNNN NNNNNNNNNNN---NNNNNNNNNN--NNNNNNNNNNNNNNNN-----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNN >Equus_caballus GTTTGAGGAATGA--ATGAA-------------TGTTTTCTTT------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------TCTTGGTGT---AAGAAAGGTAGGCTTT------- ----GTATTCAATGGAATATCATTCAGCCATAAAAAAGAATGAAGTCTTGCTATTTGTGACAGTGTGGATGGACCTTGAG GGTATTATGCTAAGTGAAA-TAAGTCAGACAGAGAAAGACAAATACTATATGATCTCACTTATGTGTAGAATCTAAAAAA AC--CCAACAAAACAAAACAAAAAAACCCCAAATAAACAAAAAACCCCT-GAGCTCGTAGATAGAAC-----AAACAGAT ------------TGGTGGTTGCTAGAGGCAAGGGTGGA-------ATTGGGCGAAAT-----GGGTGAAGGGAGTTAAAA AGTACAAAATTCCAGCTAT--AAAATAAATAAGTGCTGGGGGTATAATGTACA-CATGGTGACTATAGTTACTAATACTG TATTGTATATTTGAAAGTTGCTGAGA---------GAGTAGATCTTAAAAGTTTTCAGCACAAGAAAGTAAAATTTTGTA ACAGTGTATGGTGATGG--ATGTTAAC-AGACTTA---TTGTGGTGCTCATTTCACGGTATCTAAGAGTCTCGCATCA-- CTGTGTTGTTTACCTGAAGCTATTGTAA-TGCTGTCTGTCAGTTAGACCTC---------AATGAAAA-------TAGAG AGGTGGGCTTT---TGAGTTGAGA--ATCCTGTAGATACAGG-----TCTTTCCATGCTGTCCTACACG----------T TGTTTGT >Ceratotherium_simum GTTTGAGAAAAGA--ATGAATGAA---------TGCTTTGTTT------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------TCTCGGTTT---AAGAGAGGTAGGCTGT------- ----GTATTCAATGGAATATCATTCAGCCATAAAAAAGAATGAAATCTTGCTATTCGTGACAACACGGATGGACCCTGAA GGCATCATGCTAAGTGAAA-TAAGTCAGACAGAGAAAGACAAGTACCATGTGATCTTGCTTATATGTGGAATCTAAAAAA AAAACCAACAAAACCAAAACAAAAAACCCCACGTACACAAAAAAACCCCCGAGCTCATAGGTACAAA-----GAACAGAC --------AGATTGGTGGTTACCAGAGGCAGGGGTGGG-------GTTGGGTGAAAT-----GGAAGAAGGAAGTTAAAA AGTACAAACTTCCAGCTAT--AAAATAAATAAGTCCTGGGGGTGTAATGTACAGC--------TATAGTTAATAATTCTG TATTGTATATTTGAAAGTTGCTAAGAGAGTGGATTGAGTAGATCTTAAAAGTTTTCATCACAAGAAAATAAAATTTTGTA ACAGTGTATGGTAATGG--ATGTTAACCAGACTTA---TTGTGGTGATCCTTGTGCAGTATATACAAATCTCGTGTCG-- TCATGTTGTATGCCTGAAACTAATATAA-TGCTATGTGTCAATTAAACCTC-------AATAAAGAAA-------TGGAG AAGTAGGCTCT---CGAGTTGAGA--ATCCAGTAGATGTAGG-----TCTTTTCATCCTGTCCTACACA----------T TTTTTGT >Myotis_myotis GTTTGAGAAAGGA--ATGAGTGAGTGAA-----TGTTTTATTT------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------TCTTGGTTA-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------TAGAG AGGTAGACTTT---TGAGTTAAGAATATCTAGTAAATACAGGGTTGTTGTTTTTATCCAGTCCTACATAGCA-----TTT TTTTTGT >Rousettus_aegyptiacus GTTTGAGAAGTGC--ATGAGTGAACGAATGAA-TCTTTTATTT------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------TCTTGGTTT-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------AAGAG AGGTAGGCTTT---TAAGTTGAGA--ATCCAGTAGATGTAGA----TTTTTTTCATGCTGTCCTACACAACA-------C TTTCAGT >Condylura_cristata GTTTGATAATGAA--------------------TATTTCAATT------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------TCTTTATTT-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------AACAA AGGTAGATTTT---CAAGTTGGGA--AT-CAGTAGGTGTAGT--------------CCTTTTGTATACTACA-------- TCTTTGT >Uropsilus_gracilis GTTTG----ATGA---TGAATGAGTGAATACT-TAATT--TTT------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------TTTTGATTT-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------AAGAA AGGTAGA-CTT---CAAGTTGAGA--ATCTGATGGATGTAA---------------CCTTTTCTACACTGCA-------- TTCTTGT >Homo_sapiens GTTTGAGAAATGA--ATGAA-------------TGTTTTCTTTATTTATTTATTTCATTTTGTTTTTAAGAGATGGGGTC TTACTCTGTTGCCCAGGCTGGAACTGCGGTAGTGCAATCATAGCTCACTGCAGCCTTGACCTCCTGGGCTCAACCAATCC TCCAGCCTCAGCCTCCCGAGTAGCTGAGACTACAGGTGTGCACCACCACACCCAGCTAATTTTTTCATTTTTTGTAGAGA CAGACTCTTGCTATGTTGCGCAGGCTGGTCTCAAACTCCTGGGCTTAAGGGATCCTCCTACCTTGTCCTCCTAAAGTGCT GGTATTACAGGTGTGAGTCACTGCACTCAACTGAACGTTTTATTTTCTTAGTTT-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------ATTAG AAGTAGGCTTT---AGAATTGATA--ATCCAGTAGGTGTAGG-----TTTTTTCATTCTGTCCTACGCAATG-------T TTTTTGT Dog286_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------TTTTTCCAG----CTTTATTGAGGTATAATTGACAAA----------TAAAAATT GTATATATTTAAGGTGTACAACGTGATGTTTTGATATACGT---ATACATTGTGAAATGATTACCACA------------ ----------------------------------------------------------- >Canis_familiaris ATCCTTTCCCCAAACTC--TTGGCTG------------------------------------------------------ --------------------------------------------------TTGTTGG-----------TTTT-ACTTTC- --ATGTGAATTTT---TAAGTTTATTTTTTCCAG----TCTTACTGACATATTATCAACCTAC-----------ATCAGT GTGTAAGTTTAAGGTATAGAGCATAATGGTTTGACTTCCGTTTTGTATAATGTGAAATGT-----------ATATGGATA CT---GATGAATCTTTTAATGAAATGTTTCCTTCCTACTTCTCTCAGCAGGTGCTTCCC >Felis_catus GTTCTTTCTCAAAACTCT-TTGGCTA------------------------------------------------------ --------------------------------------------------TTCTTGGCC-------CCTTTT-ACTT--- ---TATGAATTTT---TAAATTTATTTCTTCCAG----TTTCATTGAGATATCATCAATGGAC------AGGCAATGGAC ATGTAAGTTTAAGGTGTACAGCATAATGGCTTGACTTCC-----GTATATTGTGAAATGT-----------ATATGAATA TT---GACGAGTCTTTTAAGGCAATGCCTCCTTCCTACCTCTCTCAGCAGGTGCTCCCC >Manis_pentadactyla GTTCTTTCTCAAAATCCTTTTCGTTG------------------------------------------------------ --------------------------------------------------TTCTTGGTC-------CTTGTTAACTTTC- --ATATGAATTTT---TTAATTTATTTTTTTCCAGTTTTTTTATTGAGACGTAATTGGCATGC-----------ATTACT GTATTAGTTTAAGGTATATAGCATACTGGTCTGGCATA-------TATACTGTGAAATGT-----------ATGTGAATT TT---GATTAATC---TAATGAGATGCTTCCTTCCGACCTCTTTCGGCAGGTGCTTTTC >Sus_scrofa ATTCTTTCTTAAAATTCTGTTGGCTATCCCCTCCTTTTTTTTGGCATGTGGAAATTCCTGGGCCAGTGACTCAAGCCAAT ACAGTGACAATGCTGGGTCTCCTTAACCCACTGCACTACAGTATAACTACTTCTTGGCCTTTTTTTTTTTTTAACTTTC- --ATATGAATTA--------AAAATTTTCCCTAG--------TTTGAAATATAATTGTCATGTATCACTTATATATCATG GTATAAGTTTAAGGTATACAGCATGATGTTTTGACTGA------ATATATTGTGAAATGC-----------ACATG-ATA TT---GA-TAGACTTTTAATAAAATGCTTCCTTCCTACTTCTTTCAGCAGGTTTGTTTC >Bos_taurus AAACTTTCTCAAAATTCTTTTGGTTT------------------------------------------------------ --------------------------------------------------TTCTTGGCC-------TTTTTC-GGCTTT- --ATATGATTTA--------CATTTTTCCCCTAG----TTTTACTGAGATATAATTATTATAC-----------ATCACT GTATATGTTTAAGGTGTACAACATAATGATTTGGCTTA------ATATGTCATGAGGTGT-----------GTATG-ATT TT---GGTTGACCTTTTAATGAAATGCTTTCTTCCTACCTCTTGCAGCAGGTACATTTC >Myotis_myotis ATTCTATCTCAAAATTCTGTTGGCTA------------------------------------------------------ --------------------------------------------------TTCTCATAC-------CTTTTT-ACTTTT- --ATATGAATTTT---TAAATATATTTTTACCAG----TTTTATTGATATATAATTGACATAC-----------ATCATT GTATAAGTTTAAGGCACAGAGCATAATGGTTTAACTTAC-----ATCTGTTGTGAAATGT-----------ATATGAATT TT---GATTAATCTGTTAATGAAATGTTTCCTTTCTACCTCTTTCAATAGGTACTTTTC >Rousettus_aegyptiacus ATTCTTTCTCAAAATTCTTTTGGCTA------------------------------------------------------ --------------------------------------------------CTCTCAGCC-------CTTTTT-ATTTTT- --ATATGAATTTT---TAAATTCACTTTTCTCAG----TTTTATTGAGATATAATTGCCATAC-----------ATAACT GTATACGTTTAAGGTATATGGCATCATGATTTAATTC-------ATATGTTGTAAAATTT-----------ACATAAATT TA---GAAGAATCTATTAATAAAATGCTTTTTTCCTGTCTCTTTCAGCAGGTACTTTTC >Equus_caballus GTTATTTCTCAAAATTCTTTTCGCTA------------------------------------------------------ --------------------------------------------------TTCTTGGCC-------CCTTTT-ATTTTC- -------------------------------------------------------------------------------- -----------------------------------------------------------------------ATATGACCT TT---GATTAATCTTTTAATGAAACACCTTTTTCCCACCTCTTTCAGTAGGTACTTTTC >Ceratotherium_simum GTTCTTTCTCAAAATTCTTCTGGCTA------------------------------------------------------ --------------------------------------------------CTCTTGGCC-------CTTTTC-ATTTTC- -------------------------------------------------------------------------------- -----------------------------------------------------------------------GTATGAAAT TT---GATTAATCTTTTAATGAAATACTTTTTTCCTACCTCCTTCAACAGGTACTTCTC >Condylura_cristata ATTCTTCTTCAAAATTATTTTGCCTA------------------------------------------------------ --------------------------------------------------TTCTTGTCC-------TTTTTA-GCTTTC- -------------------------------------------------------------------------------- -----------------------------------------------------------------------ATAGGAATT TT---GA------TTGTAGCAACA------CTTCCTACATCTTTCAGTGGGTACTGTTC >Solenodon_paradoxus AGTATTTCTTAAAATTCTTTGGACTT------------------------------------------------------ --------------------------------------------------CATGTATCC-------TTTTTA-ATTTTC- -------------------------------------------------------------------------------- -----------------------------------------------------------------------ATATGAATC TT---GACTACTATTTTAATGAAATACTTCCTCCCTACCTCTTTCAGCAGGTACTTTTC >Homo_sapiens AGTCTTTTTCAAATTTCTTTGGACTG------------------------------------------------------ --------------------------------------------------TTCTTGGCC---------CTTTGGCTTTC- -------------------------------------------------------------------------------- -----------------------------------------------------------------------AAATGAATT TT---GATTAATCTTTTAATAAAATGCTTCCCTCCTACCTCATTCGACACATACTTCTC Dog288_LINE >L1_CARN7_3END ------------------------------------------------------------------------AATAATAT TGTATAACNTTGTATGGTGACAGATGGTAACT-AGACTTATTGTGGTGATCACTTC------------------ACAATG TATACAAATGTCGAATCACTATGTTGTACACCTGAAACTAATATAACATTGTATGTCAATTATACTCAAATAAAAAAA-- -------------------------------------------------------------------------------- --------------------------------------- >Canis_familiaris AGATGT-CCCGGTGCTGAGAGCTGAGATCAGAGCTTCTGCAGGGGACATTT-----AAAAAAATCTCTA----------T TTTGTATCTGTGTGAGATGGTGGATG-----T-ACACTTAGTGTGGTAATCATTTC------------------ACCACA CATATGA--GCCAAATC---ATACCATCCGTCTTAAGCTTACCCAGCGCTGTATGTCAATTATATCACAGTAAGATTGCG GGGAGGGGA----------AGAAG-------CCTGTA---GGTCCT-------------CAGACTCT--TAGGAGGGCAT TTTGGTTCCCGCT---------AATAGTTTAGTGAGGGC >Felis_catus AGACGC-CCCTGCGTGGAGATCGGAGCCC----CCATCACAGAGGAGATTT-T-----AAGAAACTCTA----------T TTTGTGTCTGTATGAGGCGACGGATGCTAATT-AAACTTATTGTGGCAAACGTTTC------------------ACAACA AACGTAA--GTCACATCATGATACTGGCCACCTTAAACTTACACAGCGCTGTACGTCAATTATATCGCAATAAAACTGGG GAAATGAAAAAGAATT---AAGGA-------TCTCGA---GTTCCT-------------GAGATTCT--TGGGAAAACAT TTGGGTTCACGTTTCCTGC--CAATAGTTTGGCGAAGGC >Manis_javanica AGAGGC-CCCTGTGTGGAGATCAGACTGC----CTCCTGCAAAAGAGATTT-T----TTAAATTGT-TA----------T TTTGCATCTATATGAGGTGATGGACT-----TGAAACTTACTGTGGTAATCATTGC------------------ACAATA TATGTAA--GTTAAATCATTATGGTGTACACCTTGGTTTATCCAAGTGCTGTATGTCAATTGTATCTCAATAAAACTGGG GAAAGC---AGGGAA----AGGAA-------TCTCTA---GGTCCC-------------TAGGTTCT--TCACAAAGCAT TTTGGCTCACGTTTCCAGC--TAACGTTTCAGTGTAGGC >Sus_scrofa AAGTGT-CCCTGTGTGGAGATCAGAGGGC----CT-CTGCAAAGGAGATTT-T-----AAGAATCTCTA----------T TTTATATCTACATTAGATGACAGA---TAACT-AAACTTACTGTGGTAATCATTTATATAGGGCTGTGTGTGTGTGTGTG TGTGTGT--GTGAAATCATTATGCTGCATACCTTAAACTTACAGAGTGCAGT-----------ATCTCAATAAAGCTGGG AAT--CAAAAGAAA-----AAGAA-------CCTCTA---GGTCTT--------------------------AAAAGCAT TTTGGTTCACGTTTTCTCCTACAGCAGTTTACTGAGAGC >Tursiops_truncatus AGACGC-CCCTGCGTGGAGATCAGAGGGC----CT-CTGCAAAGGAGATTT-T-----ACAAATCTCTG----------T TTTGTATCTCCATGAGATGATGGATGTTAACT-AAACTTACTGTGGTCATCATTTA------------------CGTGTG TATATGT--GTCAAATCATCACGCGGCACACCTTAAACTTACACAGTGCAGT-----------ATCTCAATAAAACCAGG AAA--CAAAAGAGA-----AAGAA-------TCTCTG---GGTCCT------------GCAGATTTTATTAGGAAAGCAT TTGGGTTCACATTTCCCGC--CAACATTTCAGTGAGGGC >Equus_caballus AGACGC-CCGTGCGTGGAGAGCAGAGCGT----CTACTGCAAAGGCGATTT-G-----GAGAGTCTCCG----------T TTTGCATCTCTGTGAGATGATGGGTGCTGAGT-A-----ATTGTGGTCATCATTTC------------------ACGAT- TATGTAA--GTCAAATCATGACTCTGTACACCTTAAACGTATACAGTGCCGTATGCCACTTACATCTCGATGAAACTGGG GA---GAAAAGGAA-----AAGAA-------TCTCTA---GGTCCT-------------TAGGCTTTT-TAGGAAAGCAT TTTGGTTCACGTGCCCGGC--TCACATTTCAGCGAAGAC >Ceratotherium_simum AAAGACTCCCCACGTGGAGATGAGAGCAT----CTGCTGCAAAGGCGATTT-T-------GAGTCTCTG----------T TTTGTATCTGTATGAGGCCATGGGTGTTAACT-A-----ATTGTGGTCATCATTTC------------------ACAAT- TATATAA--GTTAAATCGTCATGCTGTACACCTTAAACTTATACAGTGCTGTAGGTCAATTATATCTCAATAAAACTGGG GGA--GAAAAGGAA-----AAGAA-------TCTCTA---CGTCCT-------------TAGGCTTT--TAGGAAAGCGT TTTGGTTTACGTTTCTGGC--TGACAGTTCAGTGAAGGC >Myotis_myotis GGATGC-CCCTGAGTAAGGATCAAGGCAC----CTGTTGCAAAG---ATTTGT--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AAGAA-------TCTCTA---GGTCCTTTCCTAAAAGTCGTCGGCTTT--TCAGGAAGCAT TT----------------------AAGTTCTGCAAAGGC >Rousettus_aegyptiacus AGGCG------GCATGGATATCGAGGTGC----CTGCTGCAAAG---ATTT-T--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AAGAA-------TCCCTA---GGTCCTTTCCTAAAAGTCCTAGACTTT--TAGGGAATTGT TT----------------------CAGTTCAGAGAAGGC >Condylura_cristata AGAAGC----TGCGTGGAAGGCCACGCAC----TACCAGCAAAGAA-ATTT-T--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AAGAACGTTGCTTCTGCA---GGTCGT-------------TAGGCTT---TAAAAAGGTGC TCCGGTGGACAT---------------------GTAGGC >Sorex_araneus TCATAT-TCTTCAGAGGAGACCAGAGCAC----CCTATGA-------TTTT-T--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AAGGCCTCTGATTCTCCC---AGCCTT--------------GGGCTTT--CAGGAAAACAT TTTGTTTCA-GTTCCTGGC--CAGCAGGGCCGGACAGAC >Homo_sapiens AGACACCCCTGCTGTGGAGATCAGAGCGC----CTACTGAAAAGGAGATTT-T--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AGGGATATTG-TCCTCTA---GGTCCT-------------TGAGCTTTTATAGGAAAGCAT TTTAATTCACGGTTCAGGC--CACCAGTTCAGGGAAGGC Dog289_LINE >L1MA9_ -------------------------------------------------------------------------------- ----CTCGAAGAGATATCTGCACTCCCATGTTCATTGCAGCATTATTCACA--ATAGCCAAGATATGGAAWCAACCTAAG TG-----TCCATCGACGGATGAATGGATAAAGAAAA---TGTGGT------------------------------ATATA --------------------------TACACAATGGAATATTATTCAGCCT----------------------------- --------TAAAAAAGAA---------------------------GGAAATCCTGCCATTTGTGACAACATGGATGAACC TGGAGGACATTA-TGCTAAGTGAAATAAGCCAG----GCACAGAAAGACAAATACTG-CATGATCTCACTTATATGTGGA ATCTAA---AAAAGTCA--------AACTCATAGAAGCAGAGAGTAGAATGGTGGTTGCCAGGGGCTGG-----GGGGTG GGGGAAATGGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGTACA GCATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCACCACA CACAAAAAA-----------------------------------ATGGTAACTATGTGAGGTGATGGATATGTTAATTAG CTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACA----------------------- -------------------------------------------------------------------------------- ----------------------------------------- >Canis_familiaris TTTTT-----AGAACAAAATCACCACAGTGGCG-----TACTTTGTTTATTTC---AAATAAGATGTACATTTCTCACTG ---ACTTGAGAAGCTATCTACACCCTCATGTTCATGGAGGCACTACTTATAGTATAGGCAAGGCATGGCAACAGCCTAAG TG-----TCCATAGACCGATGAATAAATGAAGAAGT---TGTCAC------------------------------ACATA --------------------------CTCACTGAGGGATGTTATTCAGCCA----------------------------- --------TAAAAAAATGA--------------------------GGAAATCCTGCCATTTGCAATAACATAGATGGACC TTGGAGGCATTA-TGCTACGTGAAATAACTCAG--------AGAAAGACAAATACTA-TATGATCTTACTTATATGTGGA ATATTC---AAATAACAACAACA--AATTTATAGGAAAAGAAATCAGACTTATGGTTACCAGAGGCAGGAGGTGGGGGAA GAAGGAATCAGAAGAAAGTGATCAAAAGGTATAAACTTCCAGTTAT--GAGACCAGTAAGTACTAGAGCTATATTGTACA ACATGATGACTATAGCT-ACACTGCTGTATAA----TAGGGAA---ATTAAGAGATTAAAACCTAGGAGTTCTCATCATA AGAAGAAAA-------TCATGTTTTTATTCTTTCTTTTATTTTCAGTGTGTCTATATGTGAAAATGG--GTATCAGCTAA GCTGATTGTCGTAATCATTTTACAA--CATATGTAGATCAAACCGTCATGCTGGATGCCTTAAACTTATACAGTGATGTA TGTCAAATATTTCTCAGGAAAATTAG---GGGGGAAAA-----------GATTTTCTGACAT---GAAGACT-TTGATTA CTGGGT----TTTGTTTAGCACAA-ATTTCTGTCCATTTGA >Felis_catus TTTTT-----AGAACAGAATCACTACATTTGCATACTTTATATT-------TC---AAACAAGATTTGCATTTCTCACTA ---ACTTGAGAAGATATCTGTACCCCCGTATTCATGGCAGCATTATTTACA--ATAGCCAAGGCATAGCGACAACCTAAG TG-----TCCATAGATGGATGAATGAATAAAGAAGT---TATCACACACACACACACACACAC----ACACACACACACA --------------------------CACACACAGGAATATTATTCAGCCA----------------------------- --------TAAAAAATGA---------------------------GGAAATTCTACCATTTGCAGTAACACAGATGGACC TTGAAGGTATTA-TGCTAAGTGAAATAATTCAG--------AGAAAGACAAATACCA-TATGATCTCACTTACATGTGGA ATCTTA---AAAAACAAAAAATCT-ACTTCATAGAAAAAGAGATCAGACTTATGGTTACCGGAGGCAGGAGGTAAGGGAA GTGGGAATTGGAAGAAAGTGGTCAAAAGGTACAAACTTCCAGTTAT--AAGACCAGTAAGAATGAGGGCTGCAATGTACA ---TTATGACTAGAGCTGACACTGCTGTATAA----CAGGAAA---ATTAAGAGAGTAAATCATACGAGTTCTCATCACA AGAAGAAAA------------TTATTTATTCTTCTTTTATTTTTATTGTATTCATATGAGAAAATGG--ATATTAGCCGA ACCTATTGGGGTAATCATTTTGCAA--TATATGTAGATCAAATCATCATGCTATATGCCTTAAACTT----AGGGATGTA GGTCATTTATTTCTCAGTACAA-TGG---GAGGGAATAGA-------TTGTGTTTCTGGCAT---GAAGCCTCTTGGTTA CTGGG------TTGTTTTGCACCA-ATTTCTGTCCATTTGA >Manis_pentadactyla TTTCTT----AGAATGACATCACTATATTTGCATCAGTTATGTTGATTATTTC---AAGCAAGTTTTGTGTTTCTAATTA ---ACTCAACAAGATAGCTACACCTCCACATTCAATGCAGCATTATTTACA--ATAGCCAAGACATGGAAATAGCCTAAG TG-----TTCACTGATGGATGAATGGATAAAGAAGT---TGTGGAGAATATATATACACATAC----ACATACATACACA ------CACTCACGTGTGCGTGCAAACACACACTGGAATATTATTCAGCCA----------------------------- --------CAAAGAAGAA---------------------------TAAAATCTTG---TTTGTGATAACATTGATGGACT TTGACAGCATTA-TGCTAAGTGAGATAAGCCAG--------GGAAAGACAAAAACCATTATGATCTCATTTATATGTGGA ATTTAAAACAAAAACAAAAAACTCAAATGCATAGAGAAAGAGACCAGTTTTGTATTTACTGGAGGCAAG-GATTGGGGAA GGGGAAAATGGAGGAG------CAAAAGGTACAAACTTAGAATCAT--AAGATAAATAAGTACTAGGGGTGTAATGCACA CCATGATGACTATAGGTAATAGTGCTGTGTGATGTATAGGAAAGTTACTAAGAGAGTAAATCCTAAGAGTTCTCATCATG AGGAGAAAATAATTTTTCCCCTTATTCTTTTCTTCTTTCTGTTTATTGTATGTAAATGAGAAGATGG--ATGTTAGCTGA GCCTACTGTGGCAGTCATCTCATGA--TACATGTAAGCCAAAGCATCATGCTATATGCCCTGAACTTATACAGTGGCATA TATTGATTATTTCTCAAGAAAATTGG---GAAGAAAATGAAAAATATTTGTGTTTCTGACAT---AAAGACTCTTGGTTA CTGAGGT----TTTTTTTGCATAA-ATATCTGTCCATCTGA >Sus_scrofa TTTTTTTTTCAGATTGAAATCACTATATTTGCACCAGTTATGTTGATTTTTTT----AATACAATTTG------------ -------------ATATCTGCACCC----------AGTGTCTTTATTTCCA--ATATCCAAGACATGGAAATAATCAAAG TGCCTATCCTATCTGTGGATGAATTGATAAAGAAGT---TGTGGT----------------------------ATATGTA --------------------------TATACAATATAATATTATTCAGCCACACACACACACACACACACACACATATGC ACACTTACCAAAAAACAGAAACAAACAAACAAACAAAAAACAATGAGGAATCCTGTCGTTTGCAACAATGTGGATAAACC TTGAGGGCATTA-TGCTATGTGAAGTGAGTCAG----GCAATCAAAGACAAATACTG-TGTGATC----TTACACGTGGA TTGTGA---AAAAAAAAAAAAGC--AATTAGTAG----AGAGATCAGATTTGTGGTTACCAGAAGTGGGGTGTGGGGTAA GGTGGAATTGGAGGAAGGTCATAAAAAAGTACAAAATTCCAGTTAT--AAGATACCTAAGTCCTAGGAAACTAATAAACA ATGTGATGATTATAGTTAACAC--------------TAGGAAACCTGTTTAGAGAGTAATTCCTAAGAGTTCTCAGCACA TCAGGAAAT-CTTTTTTTGTTCCCTTTTTTCTTCTTTTCTTTTTATTATATCTATTTTAAAAGATGG--ATGTTAGCTGA AGCCAGTGTGGTAATCATTTCATAA--TACATGTAAATTGGACCACAACACTGTTTACCTGAAACTTATACAACAGTGTA TGTCAGTCATTTCTCAAAA----GTG---GAAAAGG-----------TTGTGTTTGTAATAT---AAAGACTCGTGGTTA CTGGGTT--------TTTACATAATAAATCTGTCCATTTGA >Bos_taurus TTTTTG----AGAACAAAATCACTATATTTGTACCAGTTATACTGAATATTTT---GAA--AAATTAGTGTTTTGTATGA ---ACTTAAAAAGATATCTGCACCC----------AGAAGCATTATTTCCA--AGAGCCAAGACCTGGAGATAACCTC-- -------CCCATTGATGAATGAATTGATAAAGAAGT---TGTGGT----------------------------ATATGTG --------------------------TACACAATAGAATATTACTCAGCCA----------------------------- -----TTTTAAAAAAAGGAAATCCT--------------------AGGAACCCTATTGTTTGCAACAACATGGATAAAAT TTGAGGGCATTATTGCTATCTGAAAT--GTCAG----ACAATGAAAAACCAATACAG-TATGATCTCATTCACTCATGGA ATCTGA---AAC-------------AATTCATAGAAAAAGAGATCAGACTTGTAGTAACCAGAAGTGG------------ ------------------TTGTTGAAAGGTACAAGCTTCCAGTTAC--AAGATACATAACTCCTAGCAGTGTGATGAACA GTATAGTGATTATAGTTAATGCTGCTGGATGATATATAGGAAAGCTGTTAAA----------CTAGGAGTTATAATCACA AGGAAGAAA-AATGTTTTCCTTTTTTCTTCTTTCTTTTCTTTTTATTGTATCTATTTGAGAAAATGG--ATGTTAGTTGA AGCTTTTGTGGTAATCATTTCATAA--TATATGTAAAGCAAACTGTCATGC-------------CTTATACAGTGGTGTA TATCAGTTATTTCTCAAAA----GTG---GAAAAAAAAAA-------AA------CTGACGT---AAAGACTCTTGGTTC CTGGG------TATTTTTGTACAGTATACCTTTCTATTTGA >Equus_caballus_ TTGTTT----AGAACAGAATCACCATATTTGCATCAGTTATGTTGGTTATTTT---GAACGATATTTGTGTTTCTCACTA ---ACTCGAAAAGATATCTGCACCC-CATGTTCATAGCAGCAGCATTTACA--AAAGCCAAGACATGGAAATAACCTAAG AG-----TCCATCAAGGGAGGAATGGATAGCTAAGTATATATAATGAATAAGAATATATATATACAATGGAATATATATC ACAACTTCTTTATCTATTCCATTGTATATACAGTGGAATATTATTCAGCCA----------------------------- --------TAAAAAAG-----------------------------GAAATTCTTACCATTTGCAATAACATGGATGGGCT TTTAAGGAGTTA-CGCTAGGTGAAATAAGTCAGACACACAAAGAAAGACAAATATTG-TATGATCTCACTTAAATGTGGA ATCTAA---AAAAAAAAA-------ACCTCAAAGAAAAAGAGATCAGCCTTGTGGTTACCAGAGGTGGGGGATGGAAAGA GGGGGAATTGGAGGAAGGTATTCAAAAGGTACAAACTTCCACTTAT--AAGATAAATAAGTACTAGGAGTGTAATGTACA A-ATGATGACCATGGCTAACACTGCTGTATGACATATAGGAAAGTTGTTAAGAG-GTAAATCCTAAGAGTTCTCATCACA AAGAGAAAA-ATTTTATTCCTTTATTC-TCTCTACTTTCTTTTTATTCTAACTATATGAGAA-ATGG--ATGTTAACTGA ACTTATTATGGTAATCATTTCACCA--TATACGTAAATCAAAACATCATGCTATATGCCTTAAATGTATACAGTGATATA TGTCAATTATTTCTCAACAAAA-CTG---GGGAAAAAAGA-------TTGCTTTTCTGACAT---A----CTCTTGGTTA CTGGGTT---CTTGTTTTGCACAA-ATATCTGTCTGTCTGA >Ceratotherium_simum TTTTTT----AGAACAAAATCACTATATTTGCATTAGTTATGTTGATTATTTT---GAATGAGATTTGTGCTTCTCACTA ---ACTCGAAAAGATATCTGCACCCCCATATTCATAGCAGCATTATTTGCA--ATAGTCAACACATGGAAACAACCTAAG GG-----TCCATCAATGGATGAACGAATAAAGAAGT---TGTGATATATATATATATATATTCCACTGTGTGTTTATATA ------TACT----------------CACACAGTGGCATATTATTCAGCCA----------------------------- --------TAAAAAAACAG--------------------------GGAAATCCTACCATTTGCAACAACAGGCATTGGCC TCAAAGGTATTA-TGCTAAGTGAAATATGTTAG----ACAAAGAAAGACAAATACTG-TATGATCTCACTTACATGTGTA ATCTAA---AAAAAAAAAAAA----AACTCA----AAAAGAGATCAGTCTTGTGGTTACCAGAGGTGGGGGGTAGAAAGA GGGGGAATTAGAGGAAGGTGATCAAGAGGTACAAACTTCCAGTTGT--AAGATAAATAAGTACTAGGGATGTAATGTACA AT-TGACGACTATAGCTAATGCTGCTGTATGATATTTAGCAAA---GTTAAGAGAGTAAATCCTAAGAGTTCTCATCACA AAGAGAAAAATATTTGTTTCTTTATTCTTTTCTACTTTCTTTTTATTCTATCTATATGAGAAGATGG--ATGTTAGCTGA ACTTATTATGGTAATCATTTCACAA--TATATGTAAATCAAACCATCATGCTGCATGCCTTAAACTTATACAGTGATGTA TGTCAATTATTTCTCAACAAAA-------------AAAGA-------TTGTGTTTCTGACAT---AAAGACTCTTGGTTA CTAGGTT---TTCGTTTTGCACAA-ATATCTGTCCGTCTGA >Myotis_lucifugus TTTTT-----TGAGCACAATCACTACATTTGCATCCGTTCTATTGATTATTTT---GAACAAGATTTGTGTTTCTGATGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------AAAGACTCCTGGTTA CTGGGTT---TTTGTTTCACACAC-ACATCTGGCCATCTGA >Rousettus_aegyptiacus TTTTTC----AGAGCAAAATGACTACATTTGTATCAGTTTTATTGATTATTTT---GAACAAGATTTATGTTTCTGACAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------AAAGA--CTTGGTTA CTGGGTT---TATGCTTTGAACAA-ATATCTGTCTGTCTCA >Condylura_cristata TGTTTT----AGAATAAGATCACTG-ATTTGCATCAGTTATATTGGTTATGTT---GAACACAATTTGTGTTTCTGACGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------GAAGACTCATGATGC CTAC------CTTGTTTTGTGCAA-ATACCTGTCCATGCAA >Sorex_araneus ATTTTT----AGAATAAAATCACAACATTTGCCTCCATTATATTGATTTTTTC---TAATAAGA--TTTTTTTCTTTATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------AA-GAAACATGGTTA TTGTCTTTTGTTTGTTTTGTACAA-ATCACTGGCCATTTGA >Homo_sapiens CCTTTG----AGAACAAAATTATTATATTTGCAACAATTATATTGAGTATTCT---GAATAAGACTTGTGTTTCTGACAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------AAGGGCTCTTGGTTG CTGGGT----TTTACTTTGCACAC-ATATTTGCCTGTCAGA Dog291_LINE >L1_CARN7_3END -------------------------------------------------------------------------------- ---------------------GGTGATCACTTCACAATGTATACAAATGTCGAATCACT-ATGTTGTACACCTGAAACTA ATATAACATTGTATGTC---AATTATACTCAAATAAAAAAA--------------------------------------- ----------------------------------------------------------------------------- >Canis_familiaris TGTAGGCATCAAGGGACCATT-----------------------TAGGGCAGAACGTATTCATGTATCT------ACTTT ---GGAAACATTACTCCA------------TTTGTAGTATATACAGATATCAAATCATT-GTGTTGTAAACCTGAAATTA ATGTTATA------------------------------AAAA----------------AT------------------AA AAACA---CTCTA---GTAATAGTGGAATA-GAAAATGAGTTGTGGTGTTAGAGATAGTTAGAAGTTATTTTAATAA >Felis_catus TGTAGGGATCAAGGGACCATT-----------------------AAGGGCAGAAGGTACTCGTATTTCC------ATTTT ---AGAAACATT---CCA------------TTCACAGTATATACGGGTATCAAATCATT-GTGTTGTACACCTGAATCTA ATGTA---------------------------------AAAA----------------AT------------------AA AAACA---TTCCG---GTAACAGTGGAATG-GAAAATTAGTTGTGGCACTAGAGATAGTCAGAAGTTATTTTTATAA >Manis_pentadactyla TATAAGCATTGTGGAACTGTT-----------------------TAGGGCAGAATGTATTCACTTTAC-------ATTTT ---AGAAACATTATTCCA------------TTTGTAGTATATACAAATACTGAATCGTTAATGTTGTGTGCCTAAAACTA ATG--------TATGTC---AATTTTACCTCAA-----AAAA-----------AATCCAGAAAGATAGG---------TA GATTA---TTCCA---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Sus_scrofa TTCAGGCATTGAGGGATCACT-----------------------CAGGGCAGAAGGCTTTCCCATTTCC------ATCTT ---AGAAACGTTATTTTG-----------CTTAACAATATATATAAATATCAAATCCTC-ATGTTATACACCTGAAACTA ATATAATGTTTTATGTC---AGTTATAGCTCAA-----AAAA-------------TCCATAAAAAA-------------- GAGCATCATTCCA---GTAACACACGAAAT-AAAAATGGGTTG-------AGAGATAGCTAGAGGTTCTTTTAGTAA >Tursiops_truncatus TGCAGGCATTGAGGGATCATT-----------------------CAGGGCAGAATGTTTTCACATTTCT------GCTTT ---AGAAACATTATTTCA------------TTCACAATATATACAAATATCAAATCGTT-ATGTTATACACCTGAAACTA ATA--------TATGTC---AGCTATACCTAAA-----AAAAAAAACCAAAACCCTAAATAAAAAAGAAAGAAAA---AG AAACATTATTCCA---GTAACAGAGGAAGGCAAAAATGGGTTGTGGTACTAGAGATAGTTAGAAATTATTTTAATAA >Equus_caballus TGTAGACATTGAGGAACCATT-----------------------CAGGGCAGAGTGTACTCACATTTCC------ATTTT ---AGAAACATTATTCCA------------TTTGCAATATATACAAATATTGAGTCATT-ATGTTGTACACCTGCAACTA ATATCATCTTGTATGTC---AATTATACCTCAATAAAAAAAA--------TCCCTTATATAAAAAAG------GA---AG AAACATTATTCCA---ATAACAGTAGAATA-AAAAATGAGTTGTGGCACTAGAGATAGTCATAACTTATTTTAATAA >Tapirus_indicus TGTAGACATTGGAGGACCATT-----------------------CAGGGCAGAATGTATTCATATTTCC------ATTTT ---AGAAACATTATTCCA------------TTTGCAATATATACAAATATTGTGTCATT-ATTTTGTACACCTGCAACTA ATATAATGTTGTATGTCATGAGTTATACCTCAATTTTTAAAA-------AGTCCCTTAAAAAAAAAAAGAAAGGA---AG AAACATTACTTCA---GTAACAATGGAATA-AAAAATGGGTTGTGGTACTAGAGATAGTCAGAAGTTATTTCAATAG >Desmodus_rotundus TGTAGATATTGAGGG-CCATTAAAATGGGAATAATAAATATATTCAGGGCAGGATATATTTATATTCCC------ATTTT -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AG AAACA-----TTA---GTAAC--TGGCATA-GAAAAGGGGTTGTGGTACTAGAGAAAG----AACTTATTTTAAAAA >Rousettus_aegyptiacus TGTAGGTATTGA-GAACCATT-----------------------CAGGGCAGAATGTATTCACATTTTCC-----ATTTT -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AG AAACATTACTCCA---GTAACAGTGGAATG-GAAAGGGGGTTGTAGTACTAGAGATAGTCAGAAGTCATTTTAATAA >Condylura_cristata TGTTGACATAGAAGGTCCATT-----------------------CAGAG-GGAATATACTCACATTGTTTACATTAATGT -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AG AAAA--CATTCTA---GTAACAGTGGAATG-GAAAATGCACTGTGCCA--AGAGACAG--------------AGTAA >Sorex_araneus TGTAGGCATTCACAGAAC--------------------------CAAGGCAGGGTATATTCACATTTCT------ATTTT -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AG AAACATCATTTTA---GTAGCAGTGAAATG-GAAAGTAGTCTGTGGT-CTAGAGATAGTCAAAAGTTATTTTAATAA >Homo_sapiens TGTAGGCAGCAAGGGACCATT-----------------------CAGGGCAGAATGTATTCACATTTAT------ATTTT -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AG AAA--TTACTTAA---GTAGCAGTGGAATG-AAAAGCAGTGTGTGATAATAGAAATAGTCAGAAGATATTTC-ATAA Dog292_LINE >L1_CARN7_3END -------------------------------------------------------------------------------- ---------------------------------------------TTGTATGGTGACAGATGGTAACTAGACTTATTGTG GTGATCACTTCACAATGTATA----CAAATGTCGAATCACTATGT-TGTACACCTGAAA---CTAATATAACATTGTATG TCAATTATA-CTCAAATAAAAAAA-------------------------------------------------------- --------------------------------- >Canis_familiaris CAAAGACTTTTGCTCAAGAGGTTCCT-TCTTCCAGGAGCACG-------CTTACCCGCGCTTACCCCGC----------A A------AATAACCCCCTCCATCACC---TTTGAGGAGTCGT---------------GGCTGTTAACTAGACTTCGTGTG CCCATCACTGCGCGACCTAGA----CAAAGATTGTGTCCTCATGC-TGGACTCCAGAAG---CGGATATAATGTCATGTG TCAATTGTACCTGAATT---------AAAAGATAATTTTTATT---TTTAAAGACTCAT---CCC-AGTCTTCTCGTCCA GGAAGTCTACCTGGCGTGCCAGCCCTCCAAGGC >Felis_catus CAAAGACTTTTGCTCAACAAGTTCCCGCTTTCCAGGCTCACA-------GTTGCCCACTTTTACCTTGC----------- A------AAGCAACCATTTTATCACC---TCCGAAGACCCAT---------------GAACGTTAACTAGACTTAATGTG GTGATCACTTAGCAACAGGGA----CAAATATCGTATCATTATGCTTTTACATCTGAAA---CCAGTATAATGTTAGACG TCAATTGCACCTCAATTTAAAAAAAAAAAAAAAAGAAATTGCT---TCTGGAGACTCAT---CTCGGGTCACCCAGTCTA GGAAGTCTACCGAGATTACCAGCCCCCCAAAGC >Sus_scrofa CAAC-ACCTTTGCTCAAGAGTTTCC-----TGCAGGAGCACACCTTTACCTTATCCACCTTTATCTCGC------ACAAA A------AAACCCTCACTCTATCATC---CC---AAAGCCAT---------------GGATGTTAACTAGACTGACGTTG GTGATCATTTTGCAACAGATA----CAAATATTGTACCATGATGC-TATACACCGGAGA---CTAATACAATGTTATATG TCAATTATACTTCAATAAAAA-------------------------TTTGAAGACTCAT---TTAAAATCACCTACACTG AGAAACCTACATGAATTACCAGCCCTCCAACGC >Tursiops_truncatus CAAT-ACATTTGCTCAAGAGTTTCTC-TCTTTCAGGAGCACA-------CGAATCCACCTTTACCTTGCAAAAACAAACA AACAAACAAAAAACCTCTCTATCATC---TTTTAATG-CCAT---------------GGATGTTAACTAGACTTACTTTG GTGATCATTTTGCAACATATA----CAAATTTCGTATCATTATGC-TGTACACCTGAAACACCTAATATAAAGTTATATG TCAATTATACCTAAATAAAAAAAAC---------------------TTTTAAGACTCAT---CTTAAATCACCTACTCTA AGAAACCTACCTGAATTACCAGCCCCCCGAGGC >Myotis_myotis CAAAGACC-TTACTCAAGAGGTTCCC-TCATCCAGGAGCACA-------CTTATCCACTTATACCTTATTAAAAAAACAA A------AAAAACTCACTCTATCATC---TTTTAAG-CTCAT---------------GGATGTTAACTAGATTTATGGTG GTTACCACTTCCCAATACATATATGCAAATATCATATCATTATGC-TGTACACCTGAAA---GTAATATAATG-----TG CCAATTAAAGAAAA--------------------------------TTTAAAGACTCAT---TTCAAGTCGCCTATTCTA AGAAGTCTACCTGGAACACCAGCCCTCTGAGGT >Rousettus_aegyptiacus CAAAGACCTTTGCTCGAGAGGCTCCC-TCTTTCGGCAGCACG-------CTTATCCACCTTCACCTTCC---------AA A------AAAGCCCCACTCTGTTATC---TTTTAAGACTCAA---------------GGATGTTAACCAGACTTACAGAG GAGACCAGTCC-CAATCCATA----CAAGTATCGTATCATTACTC-TGTACACCTGAAA---TTAATATAATGGTATATG TCAATTATACCTCAGTTAGAAAAAATTAT-----------------TTTAAAGACTCAT---CTCAAGTCACCTCTTCTA AGAATTCTACATGGACTACTAGCCTTCTGAGGC >Equus_caballus CAAAGACCCTTGCTCAAGAGGGTCCC-TCTTCTGGGAGCACA-------CTTATCCACCTTGACCTTGC----------- A------AAAAACCCACTCTATCATC------------------------------------------------------ -------------------------------------------------------------------------------- ----------------------------------------------TTTTAAGACTCTC---CTCAAATTACTTCCTCTA AGAAGCCTACTTGGATTACCAGCCCTGCAAGGG >Ceratotherium_simum CAAAGACCTTTGCTCAAGAGGTTCCA-TACTCTGGGAGCACA-------CTTATCCACATTGACCTTGC----------- A------CAAAACCCACTCTATCATC------------------------------------------------------ -------------------------------------------------------------------------------- ----------------------------------------------TTTTAAGACTCTC---CTCAAGTCACTTACTCTA AGAAGCCTACTTGGATTACCAGCCCTCCAAGGG >Condylura_cristata CAAAGAACTCTGT--------------CTTGCCAGGAGCATG-------TTTATCTACCTT-ACTTTGC----------- -------AAAAAGC-------TCCTT------------------------------------------------------ -------------------------------------------------------------------------------- ----------------------------------------------GTTTTAGACTCAC---CTCAAGTCGCCTGCTCT- -GATGCCTAGCAGGAGCACCAATCCTCCAAGGC >Sorex_araneus CAAAG---------------------------------------------------------ACCTTAC----------- -------AAAATTCTCTTTCATCATT------------------------------------------------------ -------------------------------------------------------------------------------- ----------------------------------------------TTCTAAGACTTTT---ATCAAGTAGCCAACTCTC AGAAGTACACCTTGATTACCAGCCCTCTAAGGC >Homo_sapiens CAAAGACCCTTGCTCAAAGGGTTTCC-TTTTCCTGGAGAACA-------CTTCTCCACCTTCGTCTGAA---------AA A------AAAAAAAATCTTTATCATC------------------------------------------------------ -------------------------------------------------------------------------------- ----------------------------------------------TTTTAAGATATGC---TTCAAGCCATCTACTCTA AAAATCCTACCTGGATTAACAGTCTTCCAAGGC Dog293_LINE >L1MA9_3END -------------------------------------------------------------------------------- --------------------------------TTTTTCCAGCTTTATTG-AGGTATAATTGACAAATAAAAATTGTA--- TATATTTAAGGTGTACAACGTGATGTTTTGATATA-CGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACAT ATCCATCACCTCACATAGTT------------------------------------------------------------ -------------------------------------------------------------------------------- ----------------------------------------------------ACCATTTTTTTGTGTGTGGTGAGAACAC TTAAGATCTACTCT------------------------------------------------------------------ ----- >Canis_familiaris TGGGGGAGGGCATGTGAGAGTGGAGGCTCAATGCCAGCAAACGGTCATTCTGC---ATTGC-----------CTTTTTTA AA---GGTAGAAATCAATATGATTT------CTACTTTCAGTTTTACTG-AAATATAACTGACATACA-TCACTGTA--- CAAATTTAGGGTGGACAGCATGGTGACTTAACTTA---CATTTAGCGTGAAATGATTAGCACAGTAAGTTTAGTTCACA- -TCCATCACCTCATATTGTT------------------------------------------------------------ --------------AAAAGAAAGAAAGAGAGAGAAGAGAGGGGAGGATGGAAAAAGGGAGGGAGAAGGAGGAAGCTGAGA AGGGTGACAGAGAGAGGCTGGGAA----------GGAAGGAAAAGGAAAAAAAGTGTTTTTCCTTGTGAAG--AGAATTT TTAGG------------GCTGCTTGAAG---TCTTACA-CTGGCACTGATG-GTCTACATGGGGACTTTGAAGGGACGTC -TTGC >Felis_catus TGAGGGAAAGCATGTGAGGGGGAGGCCATA-----TACTAGCATTTGCTCTAC---ATTGTTTCATTGTTGTTGTTGTTT AA---CTTAGAAATAGTGGGGGT--------TTTTTTTCAGTTTTATTG-AGATATTATTGTCATACA-TCACCGTA--- TAAATTTAGGACATACAACATGGTGACTTAACTTA---CATTTAGTTTGAAATGATTAGTACGATAAGAGTAGTTAGCA- -GCTATGACCTCATATAGTTGAAAGAAAGAGAAGAATGAAAAAGAAAGGAAGAAAAAAGAAAGAAAAAAGGAAGAAAGAA GAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAAGAAAGAAGAGAGAAAGAAAGAAAGAAAGAAAGAAAGGAAAGAAAGAA AGAAAGAAAGGAAGAAGGGAGGGA----------GGAAGGAAAA-GAAAAAATGTGTTTTCCCCTATGGTG--AGAATTT TTAGG------------ATTGTTTTAAG---TCTTACCTCTGGCACTGATG-GTCTGTGTGGGGGCTTTCAAGGGACGCC -CTGC >Manis_pentadactyla TGCAGGAAGGCCAGATGACCTGAGGACCAAACACCCCC----AGTCCTTCTCT---GTTCC-----------TTTTTTTA AA---GGCAGAAACCATATGTATATTT----TTTCTTTCAGTGTCATTG-AGATGTGA-TGACATGCA-TCACTGTG--- TAAGTTTAAGGTGTACTGCATGATGACTTGAATTA---CATTTATTGTGAAATGATCACCACAATAAGCTTAGTTAGCA- -TT-ATCATCTCCTGTAGAT------------------------------------------------------------ -------------------------------------------------------------------------------- ---------------------ACA----------AACCAAGAAAAGAAAAAATGTAATTTTCCGTGTGATG--AGGAATT TTAGG------------ATTGCTTTAA----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNN >Sus_scrofa TGTAGGCAGGAATGAGAAAGGGCGGACC-AGCCCCGATGAACAGTCCTTCTCC---CCTGA------------GTTTTTA AA---GGTAGAAATCGTGCGTATAT------GTTTGCGTTGTTTTCTGT-GTATGGAATTGACATACA-CGACGC----- TCCGCGCAAGGTGTGCAGCAAAAGTCTTCAGC--A---CGTACATCGTGAAATGATTAC------AAGTGTTGCTGACA- -CCCCTCACCTCGTATAGTT------------------------------------------------------------ -------------------------------------------------------------------------------- --------------ATTTTTAAAA----------AGAGGGAAAAAGGAAAAATGCATTTTCCCTGGTGGTG--AGAACTT TTAGC------------CCTGCCCTGA-----TCGACCGCTGGCACCGATG-GTC-ACCTGGGGACCCTCACGGGCCTCC -CTGC >Bos_taurus TGCAGGAAGGAGTGAGAAAGGG-AGGCAGAGAACCAACTAACAGTCCT-CTCT---ACTAC------------TTGGTTT AA---GGTAGAAATCATGTGAATACATATATTTTTTTTTTGTTTCATTG-AGATATAACTGACAAACA-TCACTGT---- TAAGTCTACAGTGTAAAGCATAATGACT--ATTTG---CATATATTGTGGAATGGTTACTACAAGAAGTTTAATTAACA- -TTCATCACCTCATATAGTT------------------------------------------------------------ -------------------------------------------------------------------------------- --------------ATTAAAAACA----------GAAAGAAAAAGAAAAAAGTGTATTTCCCTTTGTGATA--AGAACCT TTAGC------------ACTGCTTTAA----TCTCACTTCTGACACTGATG-GTCTCTGTGGGGACTTTCAAGGGCCTCC -CCAT >Condylura_cristata TGCAGGAAGGAATGAGAAAGAGATGGCTCACTACCA------AGTCATTCTTC---ATT--------------------T AA---GATAAAAATCA---------------TATCTTTTAGTTTTAATG-AGATATCTTTGATATACA-GTACTGTAAGT TTAATATAATGGATACCATATAATAACTTGATTTC---TGTCTATCATGAGATA--------GATAAGTTTATTTAACA- -TT----------------------------------------------------------------------------- -------------------------------------------------------------------------------- -GAAAGTGAAAAAGGAGGGAAGGA----------CAGAGTAAAGAAAGAAGATTTTTTTTTTTTAATGATGAAAAAACAT CTAGG------------ATTTCTTTAAA---TTTTGCCTCTGGAAACAA---GAATCTATGTGGAGTATCAAGGGACTCT -CTGT >Erinaceus_europaeus TGCAGGAAGGAGCTAGAAGGTGAGAGCCAAAGG--TACCAGCAGTCCTTCACC---ACTG----------------TTTT A----------------------------------------TTTGAGGGTAGAAATCCC----ACACA-GTATATTCTGT TTACGGGAGTC----CTGTTCAGTGATTTAGCTACATATGTCTTACATGTGTTC--------TG-AAGTGAATTCCACA- -GT----------------------------------------------------------------------------- -------------------------------------------------------------------------------- -CCATGGCATCACCACCCATCACATCCAGAGCCACAAAATAAAAAAGACACA---TCTTTCCCTTCTGGTG--AAAACTA TTAGG------------ATTGCTCTGCA---TTTTGTGTCTGGCACCAGGACACCTCCGTAAGGACTTCCTGGAGTCTCC -CTGC >Equus_caballus TACAGGAAGGGGTGAGAAGGGGAAGGCTAA-----TGCCAACAGTTCTTCCTC---ATTGC---------------TTCA AA------------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------TCTTACCTCTGTCACCAAGG-GTCTATGTGGAGACTTTCAAGGGACTCC -TTGC >Ceratotherium_simum TGTAGGAAGGAGTGAGAAGGGGAAGGCCAAATACCCACAAATAGTTGTTCTTT---ATTGC---------------TTTA AA------------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------TCTTACCTCTGTCACAAAGG-GTCTACGTGGGGACTTTCAAGGGAGTCC -TTGC >Myotis_myotis TGCAGAAAGAAATGAGAAAGGGAAGTCCAAGT-CTAACAGATAGCCCTTCTT----ATTGC---------------TGTA AA------------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------TGTTACCTCTGACACCAAGG-ATCTGTGTATGGACTTTCAATAGACTCC -CTGC >Rhinolophus_ferrumequinum GGCAGGAAGCGAAGAGAAGGG--AAGCCCAACACCAACACACAGCCCTCCTGT---AT-GC---------------TGTA AC------------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------TCTTACTTCTAGCACCA-GG-CTGTATGTGCAGACTTTCAAGGGACTTC TTTGC >Cavia_porcellus TGTAGGACAGCATGAGAGGCTGAAGGCTCGACAGCTACCAACTGTCCTTCCTC---CT-GC------------------- CA------------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------TT--ACATCTGACATACAGGCGAC-GCACAGGGACTACCAAGCATCAAT CTACC Dog294_LINE >L1_CARN7_3END --------------------------------------------------------------------------TTTTTT TATTTG-AGTATAATTGACATACAATGTTATATTAGTTTCAGGTGTACAACATAGTGATTCGACATT--TGTAT-----A CATTGTGAAGTGATCACCACAATAAGTCTAGTTACC-------------------------------------------- ------------------------ >Canis_familiaris AAAAGGAATCTGCCTGTCTGCTCAGATAGAA--TTCTGGAGTGGCAGTTATAGAGTCTGA---TCCTTT----TTTTTTT AAATCGA---CTAAGTGACATAGAACATTATATTAGTTTTAAGTGTACAGCATAATG-------ATTTGTGTAT------ -ATTGTGAAATGATCACCATGATAAG-------------TTCA--------C--AGTGACTACTGTGCAAGTTAACAGGA CTTATGAAAT---TGACTCA-CAA >Felis_catus AATAGGAATCTGCTTGCCTGCCCAGAGAGAGACTTTTGGGGTGGCAATTCTAGAGTCTGA---TCCTTT---TTTTTTTT TTATTGAGGTATAATTGACGTAAGACGTTTTATTAGTTTCAAGTATATAACGTAATGATTCAATATTCGTGTAT------ -TCTGTGAAATGATCACTACGATGAG-------------TTCAGT---AA-C--AGTGATTGCTACCCAAATTAACAGTA CTTTTGAAAC---TGACTCA-CAA >Manis_javanica CAGAAG----------------------------------------------GAGTCTGA---TCCTTT----------- -------------------------------------------------------------------------------- ------------------------------------------------AATT--GGTGATTACTG-----------ACGA CTTTTGAAAC---TGACTCA-CAC >Sus_scrofa AAAAGAAATCTGCCTGCTTGCCCAGAGAGAGACATCTGGGG----AGTTCCAGAGTCTGA---TTCTTT-------TACT TTGTTAAAGTATAACTGATGTACAATATTATATTAGTTTCAGGTGTATAATACAATGATTTTATATTTGTATAT------ -ATTATGAAATGATCACCACAATAAA-------------TTTAAT---AATC--ATTGATTGTTGTTGGAGCTGACAGGA CTTTTGAGAC---CAACTTA-CAC >Tursiops_truncatus AAAAGGATTCTGCCTGCCTACCCAGACAGAGACTTCTGGAGTGGCAGGTCA-GTGTCTGA---TTCTTT------TTTTT TAATTGAGGTGTAAATGACATACCATATTATATTAGTTTCAGGTGTATAACACAATGATTTGATATTTGTGTAT------ -ATTGTAAAATGATCACCACAATAAG-------------TCTAGT---AATC--AGTGATTGCTGTCAGAGCTGACAGGA TTTTTGAAAT---GGACTCA-CAC >Equus_caballus AAAAGGAATCTGCCTGCCTACCCAGACAGAGACTTCTGGGGTGGCAGTTCCAGAGTCTGA---TCTTTT------TTATT TAATTGAAGTACAATTGACCTACAACCTTATATTAGTTTTGGGTGTACAACATAATGATTTGATATTTTTATATTTGTGA CATTGTGAAATAATCACCACAATAAG-------------TCTAGT---AATC--AGTGATTGCTGCCAGAGTTGACAGAA CTTGCAAAAC---TGACTCA-CAC >Ceratotherium_simum AAAAGGAATCTCCCTGTCTACCCAGACAGAGACTTTTGGGGTGGCAGCTCTAGAACCTGA---TCCTTT-----TTTTTT TAACTGAAGTATAATTGACATA---CATTATAATAGTTTCAGGTGTACGACATAATGATTTGATATTTGTGTAT------ -ACTGCAAAATAATCACCACAATAAG-------------TCTAGT---AATC--AGCAATTGCTGCCAGAGTTGACAGAA CTTTTGAAAC---TGACTCA-CAC >Myotis_myotis CAAAGGACTCTGCCTG----CCCAGACAAAGACTTCTGCAGTGGCAGTTCCAGAGCATGA---TCCTGT----------- -------------------------------------------------------------------------------- ------------------------------------------------AGTC--AGCGCTTGCTGCCAGAGTTGATGGAA CTTTTGAAAC---TAAC-----AG >Pteropus_vampyrus CAAAAGAATCTGCCTGTCTACCCAGACAGAGACTTCTGGGGTGGCAGTTCCAGACTCTGA---TTCTTT----------- -------------------------------------------------------------------------------- ------------------------------------------------AATC--AGCAATTACTGCCAGAGTTGACAGGA CTTTTGAAAT---TGACTCA-TAC >Condylura_cristata CAAAGGAATCCGTCTGCCTGCCC-GATAGAGACAACTGGCATGGCAGTTCCAGAATCC-----TTTTTG----------- -------------------------------------------------------------------------------- ------------------------------------------------AATC--AACATTTGCTGCCAGAAGTGACAGGA CTTTGGTAAC---TGACTCACATG >Solenodon_paradoxus AAAAAGAATCTACCTGCCTTCCCAGACAGAGACTTCTAGGGAAGCAGTTCCAGAGTCTGA---ATCTTT----------- -------------------------------------------------------------------------------- ------------------------------------------------AATC--AGTGATTGCTGCCAGAGTTGATAGAA CCTTTGAAGCTAATGACTCATTAT >Homo_sapiens NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCAGTTCCAGAGTCTGA---TCCTTT----------- -------------------------------------------------------------------------------- ------------------------------------------------AATCACAGCAGTTTCTGCCAGA---------- --CTCAAAAC---TGACCCA-CAC Dog295_LINE >L1MA9_3END ------------------------------------------------------------------------CGTATATC AAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA------- --------------------------------------------------------------------- >Canis_familiaris AAAAACAAAACAATAATGAAAATATGATTTAGCCTATTAAACTTTCAGAAGCT---AAAAATAAAAATA----------- ----CATTATGCAGTACATTTTAAACTTATAC-AGTGATGTATGTCAATTATATCTCAATAAAACTGGA----------- -AAAAA-TAAAAATA---ATACTAAGTTTGGCAAGCTTGGGACAGTATAAATATAAGTAC----ATTTT >Felis_catus AAAAACAAAACAATAACAAAAATATGATTTGGCCTATTAAGCTTTCAGAAACT---AAAAATAAAAATA----------- ----CATTATGTGGTACACCTTAAACTTTCAC-AGTGATGTATGTCAATTATATCGCAATAAAACAGGAAAAAA------ -TAAAA-TAAAAATA---ATATTCAGTTTGACAAGCTTGGTACAGTATAAATAGAAGTACAAC-ATTTT >Manis_pentadactyla AAAAATAAAACTATAACAGAAATATGATTTAGCCTATTAAACTTTCAGAAGTT---AAAAACAGAAATA----------- ----CATGATGCTGTATACCTTAAACTTACAC-AGTGATGTATATCAAATATATCTCAATAAAACTGGA----------- -AAATA-AATAAATA---ATATTCAGTTTGGCAAGCTTGGTACAGTATGAATATAGGCACAAC-ATTTT >Sus_scrofa AAAAACAAAAC---AACAAAGAGACGATTAAACCCATTAAAATTTCAGAAGTT---AAAAATAAACATA----------- ----CCTTGTGCTGTATAGCTTAAACTTTTAC-TGTGATATATAGCAATTATATTTCAACAAAACTGGAAAAAATAAG-- -TTAAA-TAAAAACA---ATATTCAGTATGGCAAGCTTGGCACAGGATAAACATAAGAACAAT-ACTTT >Bos_taurus AAAAACAAGACAATAACAAAAATATGACTAAGCTTATTAAAATTTTAGAAGTT---AAAAACAGAAATA----------- ----CATTATGCTGCACACCTTAAATTTATAC-AGTGATGTACAGCAATTACATTTCAATTAAATAAG------------ -TTAAA-TAAAAATA---ATGTTCAGTTTGGCAAGCTTGGTACAGTATAAATATAAATACAAT-ATTTT >Myotis_myotis AAAAACAAAACAATAACAAAAATATGATTTAGCCTATTAAACTTTCAGAAGTT---CAGAATAAAAATA----------- ----CATTATGCTGTATACTTTAAACTTATAC-AGTGATGTATGTCAATTATAGCTCAATGAAACTGGAAAGAAA----- -TAAAA-TAAAAATA---ATATCCAGTTTGGCAAGCTTGATACAGTATAAATATAAATGCATC-ATTTT >Rousettus_aegyptiacus AAAAACAAAATGATAACAAAAATATGATTTTGCCTATTAAA-TTTCAGAAGTT---AAAAATAAAAATA----------- ----TATTATGCTGTACACCTTAAACTTATAC-AGTGATGTATGCCAATTATATCTCAATAAAACTGGAAAAAATAA--- -TAAAA-TAAAAATA---ATATTTGGTTTGGCAAGTTTGGTACAGTATAAATATAAATACAAC-ATTTT >Equus_caballus AAAAATAAAACAATAACAAAAATACGATTTAGCCTATTAAACTTTCAGGAGTT--------------------------- -------------------------------------------------------------------------------- -AAAAA-TAAAAATA---ATATTCAGCTTAGCAAGCTTGGTTCAGTATAAATATAAGTACAAT-ATTTT >Ceratotherium_simum GAAAAGAAAACAATAACAAAAATATGATCTAGCCTATTAAACTTTCAGAAGTT--------------------------- -------------------------------------------------------------------------------- -AAAAA-CAAAAATA---ATATTCAGTTTGGAAAGCTTGGTATGGTATAAATGTAAGTACAAT-ATTTT >Condylura_cristata AAAAACAAAACAGTAATAAAATTACAATT-AGCATATTAGACTCTCAGAAGTT--------------------------- -------------------------------------------------------------------------------- -AAAAATTATAAGTA---ATACTCCGTTTGTCAAGCTCTGTGCAGTATTGGTGT----------ACTTC >Solenodon_paradoxus AAAAATGAAACAATAACAAAAATAGGATTTAACCTATTAAACGTTCGGAAGTT--------------------------- -------------------------------------------------------------------------------- -AAAAA-TAAAAATG---ATACCCAGTTTAGCAAGTTTGGTACCAT-TAAATATAAATAC----ATCTC >Homo_sapiens AGAAACAAAATGATAACAAAAATATGATTTACCCTATTAAATTTTCAGAAGTT--------------------------- -------------------------------------------------------------------------------- -AAAAA-TAAAGATA---ATAT----TTT------ATTGGTGCAGTATAAATATAAACACAACAATTTT Dog301_LINE >L1_CARN7_3END -------------------------------------------------------------------------------- ----------------------TTTTTTTATTTGAGTATAAT-------TGACATACAATGTTATATTAGTTTCAGGTGT ACAAC------ATAGTGATTCGACA-TTTGTATACATTGTGAAGTGATC----ACCACAATAAGTCTAGTTACCATCTGT CACCATACAANGTT------------------------------------------------------------------ ------------ >Canis_familiaris TT----------TGCTCACACAAAC-----ATATTTGGAAGTCTTTGAACAGA---GTGATTTACCTTTTCTGTGTGTG- ---------TTTTATTAAT-------------GAGGTATAAT-------TAACCT------------TAGTTTCACGTGT ACAAC------ACAAGGACTCAATA-TTTGT----ATTGTG------TC----ACCACAGTAAGTCTAGTTCATAT---- --CC-------------ATGGCTTACCTTTTTATTTATT---CTGGGGCCTAAGGGGTATAATAGTTAATTTTCTAAGAT GTCAACGAGGGA >Felis_catus TT----------CGCTCACACAAAC-----ATATTTGGACATCTTTGAACAGA---ATGATTTACATTTTCTGTGTGTAT G--------TTTTATTA-T-------------GAGATATAAT-------TG-CATAT--------ATTAGTTTCAGGTGT ACAAT------A--------------TTTGTATATGTTGTGAAATGATC----ACCACAATAAGT---------GGTGAT CACC-------------ATGGTTTACCTTTTTATTTATT---TTGGGGCCTACGGGGTAGACTAGTTAATTTTCTAAGAC GTCACTGAAGGA >Manis_pentadactyla TTTT-ATAAGAATGCTCACACAGGCATCGTATATTTGGACATCTTGGAGCAGA---ATGATTTACCTTTCATGTGTGTTT G---TTATCTTTTGTTATT-------------GAGATATAATTTATAATTGAGATAGAA-----CATCAGTTTCAGGTGT GCAGT------GTAATGATTTGATC-TCCGTCTGCATTGCAAAATGATCAATTACCACAAAAAGTCTAGTTAATGTCCAT CACC-------------ATTGTTTACCTTTTT-TTTATT---CTAGGCCCCAAGGGGTGTAACAGTTAACTTTCTAAGAT GTCACTAAGGGA >Sus_scrofa CTTTTAAAAGAATGCTCACACAAAC-----ATATTTAGACATTTTTGAACAGA---AT-ATTTACCTTCTGTG------- ---------TTTTATTATT-------------GAGAAATAAT------TTAACGTATAA---CATATTAGTTTCAGGTAT ACAAC------ATAATCTTTCGATGTTTTGTGTATCTTGCAGAATGCTC----ATTGCAATAAGCCTAGTTAACATCCAG CACC-------------ATGATTTACCTTGTTATTTATT---CTAGGGCCTAAGGAGCATAATAGT----TTTCTAAGAC ATCACTGAGGGA >Bos_taurus TCTTAAAAAGTATGTTCACATAAGCACCTTATGTTTGGACATCTTTGAACAGA---ATGATTTACCTTTTGTGTGTGTGT G---------CGTGTTATT-------------GAAATAGAAT-------TGACACATAA--------TAGTTTCTTGTGT ACAACATAGTAATAGTAATTTGATA-TTTATATATATTGCAAAATGATC----ACAGCAATAAATCTAGTTAATGTCCAC CACC-------------ATGGTTTAC-TTTTTATTTATT---CTAGGGCCCAAAGA-TATAATTGTTAATTTTCTCAAAT GTCACTCAGGGA >Equus_caballus TTTT-AAAAGAATGCTCAAAGAAACATCTT-TATTTGGACATCTTTAAATAGA---AAGATTCACCTTTTGTGTGTATGT G--TGTGTTTTTTATTATT-------------GAGATATAAC-------TGACATATAA--------TAGTTTCAGGTGT ACAAC------ATAATGATTCGATA-TTTGTATATATTGCAAAATGATC----ACCACAATAAGTCTAGTTAACATCTGT CACC-------------ATGATTTACCTTTTTATTTATT---CTAGGGCCTAAGGGGTATAATGGTTAATTTTCTAAGAC ATCAGTAAGGGA >Ceratotherium_simum TTTTAAAAAGAAGGCTCACAGAAACATCTTATATTTGGATATCTTTAAAGAGA---ATGATTTGCTTTTTCTGTGTGTTT GTTACCTTTTTTCATTGTT-------------GAGATATAAC-------TGACATATAA---CATAGTAGTTTCAGGTGT ACAAC------ATAATGATTCAACA-TTTTTACATATTGTCAGATGATC----ACCACAGT--GTCTAGTTAACATCCAT CACC-------------GTGATTTACCTTTTTATTTATT---CTAGGGCCTAAGGGGTATAGTAGTTAATTTTCTAAGAC ATCACTAAGGGA >Myotis_myotis TTTTAAAAAGAATCCTCACGCAAACATCTTATGTTTGGACATCTTTGAATAGA---ATGATTTAATTTTTTT-------- ------------ATTCATT------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------CTAGGGTGTAAGGGGTTTCATAGTTACTTTTCTAAGAC GTCAGTGAGTGG >Rousettus_aegyptiacus TTTTAAGAAGA------ACACAAACATCTTAGATTCGGACATCTTTGAACAGA---AAGATTTAACCTTTTT-------- ------------ACTTATT------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------CTATGGCCTAAGGAGTATAATAGTTAATTTTCTAAGAT GATACCAAAGGA >Condylura_cristata TTTTAAAAAGAATGCTCATGCAAATATCTTGAGTTTGGACATCTTTGAATGGG---ATGCTTTGCCTTTTT--------- ------------ATTTTTT------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------CTAGAGCCTAACTGGTATGATATTCCATTTTCTGAGAT NNNNNNNNNNNN >Sorex_araneus TTCT-AAAAGAATGTTTGTGGAAGTATCATTTATTTGGAC----------AGA---ATGATTTATTTCACT--------- ------------ATTTATT------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------CTAAGCCCTAAAAGGTACACTAGTTNNNNNNNNNNNNN NNNNNNNNNNNN >Homo_sapiens TTTTCATAAGAATACTCAC----ACATCTTACATTTGGACATCTTTGAACGGA---ATTATTTACCTTTTC--------- ------------ATTTATC------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------CTAGGGCCTAAGGAATATAATAGTTAA-TTTCTAAGAT CTCACTNNNNNN Dog302_LINE >L1MA9_3END -------------------------------------------------------------------------------- ----------------------------------------------------------ATGTGAGGTGATGGATATGTTA ATTAGCTTGATTGTGGTAATC----ATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATAC AATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA--------------------------------------- -------------------------------------------------- >Canis_familiaris TAGGAAAACATTCACA-TTTACGG------------------------------------------------TA---TTT TTATTTTGATATTCAAATG---AAAGAA---------------TAGTAGATAACT----------------G--ATATTA GCTGGAACTTTTGGTATAA---------TCATCA--TATATGTAAATCACACCATCATACTGTATACCTTAAACTTATAC AC-TGATGCATGTCAATTAT-TTTCAGCAAAACTAGGGGAAAAAAA---GAATAATAATAACCAACC---ATTGGAAATG TAGAAAGAAT-GATAATGCAAGATA---AGGCAACACATTTCTTAGAATC >Felis_catus TAAGAAAACATTCACATTTTACAG------------------------------------------------TA---TTT TTATTTTGATATTCAAATG---AAAGAA---------------TATTAGATAACT------------GATGG--ATGTTA GCTGAACCTTTTGGGATAATC----ATTTCATAA--TATATGTAAGTCAAACCACCATGCTGTACATCTTAAACTTATAC AA-TGATATATGTCAATTATTTCTCAATAAAAATAGGAAAAA-------AAAGAATAGTA-ATAACC---AACAGAAATG TGGGAAGAAT-GATAATGCAAGATA-------------------AGGAAT >Vicugna_pacos TAGGAAAACTTTCACATTTTACGG------------------------------------------------TATTGCTT TTATTTTGATATTCAAATG---AGAATATTCATGATATTCAAATAGTAGATGACT------------GATGG--ATGTTA GCTGGACCTACTGTGATAACC----ATTTTACAG--TATATGTAAATTGGACCATCATGCTGTGCACCTTAAACTTATAT AA-GGATGTATGTCAATTATTTCTAAATAAAACTGGAAAA---------AAATAATAGTAGATAACC---AACTGGAATG TGGAAAGAAT-GATAATGCAAGATGAAGAGGCAACAAATTG-TAAGGATT >Bos_taurus TAGGAAAACATTCATATTTTATGC------------------------------------------------TACTGTTT TTATTTTGATATGCAAATG---AAAGAC---------------TAGTAGGTAACT------------GATGC--TCATTA GTGGAACCTATTG--ATAGCA----ATTTTATAA--TATATGTAAATCAAGCTATCATGCTGTAAACTTTAAACTTATAC AG-TGATGTATGTTAATTATTTTTCAGTAAAACTGGAAAAA--------AAAGAATAGTGGATAACC---AACAGAAAAG TAGAAAGAAT-GATAATGCAAGATGAGAAGGCAACATTATG--AAAGATG >Equus_caballus TAGGAAAACATTCATATTTTACAG------------------------------------------------TACTGTTT TTATTTTGATACTCAAATG---AAAGAA---------------TAGTAGATATCT------------GGTGG--ATATTA GCAGAACCTATTGGGATAATCATTTATTTCACAG--TATATGTAAATCAAACCATCATGATGTGCACCTTAAACTTATCC AG-TGGTGTAGGTCAATTCTTTCTCTCTAAAACTGGAAAAGAA------AAAGAATAGTAGATAACC---AACAGAAATG TGGAAAGAAT-GATAATGCAAGATAAAAAGGCAACAAATTTTTTAGGACT >Ceratotherium_simum TAGGAAAATATTCATATTTTATGG------------------------------------------------TATCGTTT TTCTTTTGATATTCAAATG---AAAGAA---------------TAGTAGATAACC------------AATGG--ATGTTA GCAGAACCTATTGCGATAATC----GTTTCACAA--TATATGTAAATCAAACTATTATGCTGTGTGCCTTAAACTTATAC AG-TGGTGTATGTTACTTCTTTCTCAATAAAACTGGAAAAGAG------AAAGAATAGTAGATAACC---AACAAAAATG TGGAAAGATT-GGTAACACAAGATA------------ACATTTTAGG-CT >Myotis_myotis TAGGAAAATATTCACA-TTTACAG------------------------------------------------TGCTGTTT TTATTTTAATACTCACATG---AAAAAA---------------TAGTAGCTAACC------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------AACAGAAATG CGGAAAGAAT-AATAA----------GAAGGCAACACATTGCTTAGGACT >Pteronotus_parnellii TAGGAAAACATTCACATTTTACAG------------------------------------------------TACTGTTT TTATTTTAATATTCATGTG---AAATAA---------------TAGTAGATGAGT------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------GACAGAAATG TGGAAAGAATGGACTATGTAAGATA-GGAGGCAACAAATTGCTTTGGACT >Condylura_cristata TAGGA--------------TATAG------------------------------------------------TATCATTT TTATTTTGATATGTAAATG---AAAGGG---------------TAATAGATAACC------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------AAAAGAAATG AGGAAAGA-T-GATAATGCAAGATAAGAAGACAGCAAATTTCTGAGGACT >Solenodon_paradoxus NNNNNNNNNNNNNNNNNNNNNNNN------------------------------------------------NNTCATTT TAATTTTGGCATTCAAATG---AAAGGA-------------------------TC------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------AGCAGAGATG TGGAAAGA-T-GATAATGCAAGATTAGATGGCAACAAATTTCTTAGGACT >Homo_sapiens TAGGAAAATGTTGA-ATTTTACTGAGTGCCAGAAAAATCTTAAATGGAAAATGTTATGAAAACGTTGAATTTTACTGTTT TTGTTTTGATATTCAAATG---AAAAAA---------------TAGTAGATAACC------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------AACAGGAATG TGGAAAGAAT-AATAATGTAAGA-----AGGCATCAAATTTCTTAGGACT Dog303_LINE >L1_CARN7_3END -------------------------------------------------------------------------------- -----------------------------------------------------------------TTTTTTTATTTGAG- TATAATTGACATACAATGTTATATTAGTTTCAGGTGTACA-ACATAGTGATTCGACATTTGTATACATTGTGAAG----- -------------------------------------------------------------------------------- - >Canis_familiaris GAA-TTTTCCCATT----CTGCTTTTCCTTTT-TAAATATTCTTTTGTTCACCTTATCTG------TTTCTCCATTTTT- ---AAATGGCTCAAACAAAATAGAA-------------------------------------GTTTTTCGAAAATTGAGA TATAATTGACATATAACATTATATTAGTTTCAAGTGTTTA-ATGTAATGATTCGATATTTGTA-A-------------CT -TTTCTCCATGTTC---GATTAATGA-TATAGAGT----CCTCCCAA-------AAGAGCCTCCTCAGTATCCGCGTTTT T >Felis_catus GAGCTTTGCTCATC----CTACCTTTCCTTTT-TTAAAATTC--TTATTCACTTTATCTT------TTTGTCCATTTTT- ---TAATGGCTCAAACAAAATAGAAAATTGAGATATAATTGACATATAACATTATGTTAGTTTTTTTTTTTTAATTGAGA TATAATTGACATATAACATTATGTTAGTTTCAGGTGTTTACACATAATGATTTAATATTTGTA-A-------------CT TTTTCTCCGTGTTT---AATTAATAA-TGTAGAGT----CT-CTTAT-------AATAGCCTCCCCAATATTTCCA-TAT T >Manis_pentadactyla AAACTTTTCCCAT-----CTACCTTTCCTTTTTTTTATACTTC-TGATTCACTTTATCTT----TTTTCTCCCATTTTT- --TTAATGGCTCAAACAAAATGGAA------------------------------A---TTTATTTGCTTCAAATTGAGG TATAATTGACA--TAACATTATATTAGTTTTGGGTATCCA-ACAAA--------ATATATGTA-A-------------CT TTTTCTCCATTTTT---GATTGATAA-TAGAGCGT-------CCCAA-------AATAACCTCCTGAACATCTCCA-TGT T >Sus_scrofa GAACTTTTTCAGTT----TTAACTTTATTTTT------TTTC--CTTCTTACTCTGTCTT------TTTCTCTATTTTT- ---TAATGGCTCAAACAAAGTTGAA----------------------------------GTTTTTTTTATTTAGATGAGG TATAATTGATATGTAAC---ATATTAGTTGCAGGTGT----ACAACAGAATTCAATATTTGTA-A-------------TT TTTTCTCCAGTTTT---GATTGATGATCATAGAGC----CT-CCCAA-------AATAGCCTCCTTAGTATCTCTG-TAT T >Tursiops_truncatus GAACTTTTCCAGTT----CTAACTTTTCTTTT-----GTTTC--TTATTCACTCTATTTT---------ATCTATTTTT- ---TAATGGCTCATACAAAATAGAG------------------------------------GTTTTTTTTTTAATTGAGG TATAATTGACATATAACATTATATTAGTTGCAGGTGT----ACAACAGGATTTGATATTTGTA-A-------------CT TTTTCTCCCATTTT---GATTGATGGTTATAGAGT----CC-CCCAA-------AATAGCTTCCTCAGTATCTCCA-TAT T >Equus_caballus GAACTTTTTCCATT----CTACCTTTCTTTTTATCCCCCTTC--TTATTCACTTTATCTT-------TTCTTCATTTTT- --TTAATGGCTCAAACAAAATAGAA------------------------------GTTTATTTCTTTTTTTTAATTAAGG TATAATTGACATATAACATTATATTAGTTTCAGTTATACA-ACATAATGATTCGATATTTGTA-A-------------TT TTTTCTCCATTTTT---GATTGATGATTATAGAGT----C--CCCAA-------AATACCCTACTCAATGTCTCCA-TAT T >Ceratotherium_simum GAACTTTTTCCATT----CTACTTTTCCTTTT-TTTCCCTTC--TTATTCACTGTATTTT-----ATCTTTTCATTTTT- --TTAATGG-------AAAATAGAA--------------------------------------AATTTTTCTAATTGAGG TGTAATTGACATATAACATTATATTAGTTTCAGTTGTACA-ACATAATGATTCGATATTTGTA-A-------------CT TTTTCTCCATTTTT---GATTGATGATTATGGGGT----CC-CCCAA-------AATAGCCTCCTCAGTATCTCCA-TAT T >Myotis_myotis GAACTTTCCCATTC-TTTCTGTATTTACTTTTTTCTTATCAC--TTTGTTATTTTAT------CTTT-TCTCCATTTTT- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------GATTA---ATTATAGTGT----CT-CCCCCTCCCCCAAACAGCCTATTCAATTTCTCTA-TAT T >Rousettus_aegyptiacus GAATTTTCCCCATT-TTCCTACCTTTTTTTTT------------TTTATCACTTTTTAAT---CTTTTTTTCCATTTTT- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------GATTGATGATTATAGAGTACCCCCCCCCTAGCCCCCCAATAGCCTCTTCAATATCTA---CAT T >Condylura_cristata GAACTGTTCACATTCTTTCTACCTTTCCTTTTTTAAAATTTT---------------------CTTTCTCTCCATTTTT- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------GATTGTTGACTATAAAAT----CTAGCCA--------GATAGCTTCCTCAATAACTCTT-TAT T >Solenodon_paradoxus AAACTTTTCTCATT-----TATATCTTCCTTT--TAAATTTACTTTATTT----GAT------CTTTTTGTCCATTTTT- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------GATTGATTATTATTGAAC----CT-CTCA--------AATGACCTCCTCAGTATCTA---TAT T >Homo_sapiens GAACTTTTCTCATT----CTGTCTACCTTTTT---AAAATT---TTATTCACTTTAT------CTTTTTCTCCAGTTTT- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------GATAGATGATTATAGAGT----TC-CCCAA-------AATGGCCTTCTTACTATTTCTA-TAT T Dog307_LINE >L1MA9_3END -------------------------------------------------------------------------------- ------------------------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGT GTACAACGTGATGTTTTGATATACGTATACATTGTGAAATGATTACCACAATCAAGCTAAT------------------- ---------------------TAACATATCCATCACCTCACATAGTTACCAT---------------------------- ---TTTTTTGTGTGTGGTGAGA---ACACTTAAGATCTACTCTCTTAGCAAATTTCAAGTATAC---AATACAGTATTAT TAA-CTATAGTCACCATGCTGTACATTAG--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---- >Canis_familiaris TTCTAAA----CAA-AGATACTTTGAATTTGGTCTGTTAC---TGGTCATAAT---CTGGTTTCATA---CAAATTTCCC GAT---TT---TTA----AAATTATTTTTCCAGTCTTATTGAGATCTAGTTGGCACA-CATCACTGTGTAAGTTGAAGGA GTAGAGCATAATGGCTTGACTTA-ACATGTACTGTGCATTGGTGACCTCAATAAGTTTAAT------------------- -----------------------TAGCATCCACAATCTCACACAGACACAATAAAAAGCA--------AAAAAA------ --ATATTTCCCTTATGATGAG-----------GATTTAACTCTCT---TATTTTTCATACAGAT---CATACAGCAGCAT TAG-CTATGGTCATCATG--------------CTGTACACATCACCATTTCCAGAT---ACT----GACAAGTAAAATGG AAG-AGCTC----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------CA------TT-GGGTTTAATTATAATTCTT TGTC >Felis_catus ATCTACA----CAA-AGAAAATTTGAATCTGGTTTGTTAT---CACTCACAAT---CCGGTCTCATA---CCAATCTCCA GAT---TT---TTA----AAATTATTCTTCTACTTTT-TTGAGATCTAATTGGCATA-CATCACT-TGTAAGTCTAAGGT GTGTAGCCTAATGGCTTGACTT--ATATACACTGTGCAGTAATGACCTCAGAAAATTTAAT------------------- -----------------------TAGCAGCCATCAGCTCATATAGACACAATAAAAAGCA--------AAAAAA-----T ATATATATTCCTTGTGATGAAA---ATTGTTCAGATTTACTCT-----TAACTTTCATATATAT---CATACAGCAGTGT TAG-CTATAGTTTCCATG--------------TCGT--ACATTACAATTTCTAGAT---TCT----GACAAGTAAAATGG AAG-AGCTT----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------CA------TT-GGCTTTAATTACAATTCTT TCTC >Manis_pentadactyla CTCTGAGGCAGCAA-AGCTCCTTTGCATCTGGTTTGTTACAATCACTTATAAT---CTTGTTTCACA---TAAATTTCCG GAC---TG---TTAAAAATCATTTTTTCCCCAGCTTTTTAAAGATATAATTGGCATC-CATCACTGTCTAAGTTTAAGGG GTACAGCATAATGGTTTGACTT--ATACACATTTTGAACTGATCACCACAGTAAGTTTATCACCTCGTATAGACATCATC TATCATCTATCTATATCATCGCATTATCTTTATCATCTCAGATATACAAAAAAAAGAGAA--------AACAAAAAAAAA ATTCCTTTTCCTTATGAGGTAAAT-CCTCTTAGGATTTACTTTCCTAACAACTTTCACATATGGTCTCACACAGCAGTAT GAA--------CATCATG--------------CTGT------TATAATTTCCAGAT---TCT----CATGCATAAAATGG AAG-CACTC----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------CG------CTGGGGCTTAATTACAATTCTT TCTC >Sus_scrofa NNNNNNNNNNNNAA-AGATACTTTGGATCTGCTTTGTTATCATTTATAATAAT---CT-GCTTCATA---TAAATTTCTA TTA---CT-TTTCAAGTTACATTTTATGTCCAGTTTTAATGAGATATGATTGATACA-CATCACTGTGTAAGTTTAAGG- ----------------TGACTT--GCGTGCACTGTGA-------------------TTAGT------------------- -----------------------TAGCATCCATTCTCTCATATAGATACAATTAAAAAG--------------------- ------TTCCCTTATTATGAGACTCACTCGTAGACTTTACTCTCT---TAACTTCCCTATGCAT---CCCACAGCGGTGT TAATTTCCAGTCATCATG--------------CTGG--ACAGTACAATCCCCAGAT---TTT----GACAAGTGAAAGGG GAA-CGTTC----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------CA------CT-AGATTTAATTATAATCTTT TCTC >Bos_taurus CTCCAAAGAAGCAA-AGATGACTTGCATATGGTTTGTTAT---AATCACTAAT---CTGGTTTCATA---TGAATTTCCA GAT---TTAAGTTA----CTTTTTTATTTCTAGTTTTAATGAGATGTGATTGACATA-CATCACCGTATAAGTTTAAGGT GTGCAGCGTAATAGTCTGACTT--ACATGTATTGT-----GATTACCAC------------------------------- ------------------------AACACCCATCATCTCATATAGATACAATTAAAAAA--------------------- --CTTTTTTCCTTGTTAGGAGACTTACTCTCAGGATTTATTCTCTTAGCAACTTTCCTATATATTAATATATAGCAGAGT TAA-CTACAGTTCTCATG--------------CTGT--ACATTACAATTCCCAAGT---TTT----GACAAGTGAAATGG AAA-AGTTC----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------CA------TT-GGGTTTAATCCCAAGTCTT CCTC >Equus_caballus CTCCAAAGAGGCAA-AGATACTTTGGAGCTGGTTTGTTATAATCATTCATAAT---CTGATTCCATA---TAAATTTCCA GGT---TT---T---------ATTTTTTCTCAATTTTCTTGAGATGTAATTGACATA-CATCACTGTATATGTTTAAGAT GTACAGCATAATGGTTTGACTT--ACATATATTATGAAGTGATAACCACAATAAGTTTAGT------------------- -----------------------TAGCATCCATCATCTCATAGAGATATAATAAAAAGAA--------AAAGA------A TTTTGTTTCCCTTGTGATG------ACTCTCAGGATTTACTCTCTTAACATCTTTCGTACATAT---CATACGACAGTGT TAA-CTACAGTCATTATG--------------TTGT--ATACTACAATTTCCAGAG---GTT----GACAAGCAAAATGG AAG-AGTTC----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------CA------TT-TGGTTTAATTATAATTCTT TATC >Ceratotherium_simum NNNNNNNNNNNNNNTAGGCCATCAGG-GCTGG-------------CTCAGAAT-------TTCCAGATTTTTTTTTTTAA GTT---AT---TT-----TTGTTTTTTCCTCAATTTTATTGAG--ATAATTGACATA-CATCACTGTATAAGTT------ -----ACATAATGGTTTAACTT--GCATATATTGTGAAGTGATTACCACAATAAGTTTAGT------------------- -----------------------TAGCATCCATCATCTCATAGAGATACAATAAAAAGAATTAAAGAAAAAAAA-GAAAA AAAATTTTTCCTTGTGATG------ACTCCTAGGATTTACTCTC--AACATCTTTCATATATAT---CATACAGCAGTGT TCA-CTATAGCAATCATG--------------CTGT--ATATTACAATTTCCAGAT---TTT----GACAAGTGAAATAG AAG-AGATC----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------CA------TT-GGGCTTAATTATAATTCTT TCTC >Myotis_myotis CCCCAAAGAAGCAACGGGCACTTGTGATTTGCTCTGTTATAATCCCTTGTAAT---CTGCTTTCGTA---TAAATGCCCT GGT----------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------TTT----CCC-----CAATGG AAG-AGCTT----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------CA------TG-GTGCTTAATTCCAATTCTT TCTC >Rousettus_aegyptiacus CCCCAAAGAAGCAA-AAATACTTTGGATTTGGTTTGTTATAATCGC--ATAAT---CTGGTTTCATA---CAAATTTCCA GGT----------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------TTT----GAC-----AAATGG AAG-AGCTC----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------TA------CT-GGGTTTAATGACAATTTTT TCTT >Condylura_cristata CTCCAAAGAAGTCA-TGACACTGTGAATCTGGCTTATCATAATCACTTCTAAT---CTGGCTGCATA---TAAATTTCCA GAT----------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------TTTTTTGATGAAGTAAAATGA AAATAGTTC----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------CA------TT-GGG--------------TT TCTC >Erinaceus_europaeus ATTCAAAGAA-----AGATACTGTGAATCTAGTTTTCTATAATAATTGGCAAT---CTAGCTATGTA---TACATTTACA GAA----------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------TTT--TTGGCAGTTACAATGA AAG-AGCTC----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------CA------TT-GGGTATAATTACAGTTCTT TCTC >Homo_sapiens TTCCAAAGAAGCAA-AGGTAGTTTAGATTTGGTTTGTTATAATCTCTTATAAT---CTGGTCTCATATAATATATTTCCA CAT----------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------TTT----GACAAGTAAAATGG AAC-AGCTCTTTGGGAGGCCAAGGTGGGTGGATCACCTGAGGTCAGAAGTTCGAGACCGGCCTGGCCAACATGGTGAAAC CCTGTCTCTACTAAAAATACAAAAAATTAGTTGGGCGTGGTGGTGGGTGCCTGTAAATCCCAGCTACTCAGGAGGCTGAG GCAGCAGAATCGCTTGAACCCAGGAGGCGGAGGTTGCAGTGATCCGAGATTGCACCATTGCACTCCAGCCTGATCAACAG AGCGAGACTCCGTCTCAAAAAAAAAAAAGGAAAAGAAAAAGGAAAAAGAACAGCTGTGTT-GGGTTTAATTACAATTCCT TCTC Dog308_LINE >L1_CARN7_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------TTTTTTTATTTGAG-TATAATTG--------ACATACAATGTTA-T ATTAGTTTCAGGTGTACAACATAGTGA-TTCGACATTTGTATACATTGTGAAGTGATCACCACAATAAGTCTAGTTACCA TCTGTCACCATACAANGTTANTACAATATTATT----------------------------------------------- -------------------------------GACTATATTC--------------------------------------- --------------------------------------------- >Canis_familiaris GCTCTATGGGAT-ACCCATAC-------CCAGCTGAGGATGGGT------GGGAATTT-CTC---TTCACTGCCAAGGGG TTTTGTTTTGTTTTGTTTTTTTGTCTT----------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------TTGGTATAA---GT GTCCTTAATTTGGTATTACAGTCCATTTTTTCTCTTTTTTAAATTGAGGTATAATTG--------ACAT-TAACATTA-T ATGAGTCTT-CGTGTTTACCATAAAGATTTTGATTTCTGTGTCCACTGCAAAATGATCCCCACAATAAGGCTAGTGAACA TTGGTCACTTTACATAGTCGCAAAAGAATTTTTCAAAAATTTTTTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC TTTCTTTCTTTCTTTCTTTTTCTTTCTTTCTTTCT---------TTCGCTGTCATGTCTATTGCTCTAG---AATAAGTA AATGTG-GCACTCA--GCTGGCTGTCACTTTACCAGATCAATTCC >Felis_catus GCTCCAGAAGACACCCCATGC-------CCATCTGAG---AGGGCCCCGGGGGAATAC-CTC---TTCACTATCATGGTT TCATTGTTGTGTTTTGGTCTTTTTTTAAGATTGATTGATTGATTGATTGATAGAAAGCAGGGGCAGAGAAGGAGAGAAAG AGAATCTCAAGCAGGCTCCACGCAGCACAGTGCAGAGCCTGACACAGGGCTCGAAATCATGAACCACGAGATCATGACCT GAGCTGAAACCAAGAGTTGGGTACTTAACCAAGGGAACCACCCAGGTGCCCCTGTTTTTTTTGTCTTTGGCCTAA---GT TTCCTTAATGTATTATGACAATTAAGTTGTTCTCTTT---AAATTGGGGTATAATTA--------ACAG-TAACATTA-T ATTAGTTTT-GGTGTATACCATGA----TTCGGTATCTGTATCCACTGCAAAATGATCACCACAATAAGTCCAGTTAACA TCTGTCACTTCACATAGTTACAGAGGAAACATT----------------------------------------------- ------------------------------TTTCC---------CCCCACGTCACGTGTAGTGCTTTAA---ATGAAGTA AATGTG-GCACTCA--GCTGGCTGGCACTTTAGCAGATCAATTCC >Manis_javanica GCACCT----AT-ACCTACGC-------CCATCTGAG------TCGCTGGGGGAATAT-TGA---CTCAC---------- ---------ATTGTGTGTGTGTGTGTGT---------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------GTGTTTAAA---AT TTCCTTAGTTTATTATTACAACTCAT--------TTTTTTAAATTGAGGTATAATTG--------ATAT-TAATACTG-T ATTCATTTCAGGTGTATAACATAATGA-TTTAACATTTGTGTACACTGCCATGTGAT-ACCACAATAAGTCTAGTTAACA TCTGTCAC--CACACAGTTACAAAAAAAA---T----------------------------------------------- ------------------------------TGTTT---------TTCACTGTCATGTTTACTACTCTAA---ATTGAATA AATGTG-GTACTCA--GCTGGCTGCCACTATACCAAATCAATTCC >Sus_scrofa ACTTCACGGGAT-TCCCATGC-------CCACCTGAG--TGGGTCCCTGGGGAAAAAC-CTC---TTCGCTGTCA----- TTTTTGGGGGTTAGTTTCCTTACCATG----------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------TTTTTCTAA----- ------------------------------------------CTTGAGTTATAACTG--------ACAT---ACATTA-T ATTGGTTTCAGGGATACAACCGAATGA-TTCAATATTTATATACATTTTGAAACAATCGCTTCACAAAGTCTAGTTAACA TCCATTTCTTTACAGAGTTACA--------TTT----------------------------------------------- ------------------------------GTTTT---------CTCACCGTCATAGCTATTGCTCTAT---ATGAAATA AACACA-GCACTCA--GCTGGCTGCCGCTTTACCACATCAATTCC >Bos_taurus ACCCCACAGGAT-CCCCACGA-------CCATCTGAG--TGGGTCCTTGGGGAAACAT-CTC---TTCACTGTTA----- --TTTCTTGGTAAGTTTCCTTAGTTTA----------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------TTATTATAA----- -----------------------------------------------------------TTCTTTTCATAAAACATTA-T ACTGGTTTC-GGTATACAACATAATGA-TTCAATATTTGTATACATTTCTAAATGATCAATAGAATAAGGCTAGTTAATA TCTGTCAATTCACATAAGTACAAAAAT----------------------------------------------------- ------------------------------TTTTT---------TTCACCGTCATGTTT-------------ATTGCATA GACGTG-GCACCCA--GCTGGTTATTACTTTAACAAATCAATTCC >Myotis_myotis ACTCCTCAGGAC--CCGGCGC-------CCAGCTGAG--TGGGTCCTTGGGGGGT-GC-CGC---TTCACTGTCA----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------TTTCTTAAA----- -------------------------------------------TTGAGGTATAATTGTTAGCATTATACCTAGCATTAGC ATTAGTTTCAGGTGTACAACAAAATGG-TTCGATATTTGTACACATTGCAAAATGATCACCACAATAAATCTAGTTAGCA TTCGTTACAA---------------------------------------------------------------------- ------------------------------TTTTT---------TTCACTGTCCTATTTATTGCTCTAA---ATTAAATA AATGTG-ACACTCG--GCTGGCTGCCACTTTGCTA-ATCAGTTCC >Rousettus_aegyptiacus ACTCCACAGGAT-ACCCGCGC-------CCATCCTAG--TGGGCCCCTGGGGGAATAC-CTC---TTCACTGTCA---AG TTTATTTTTTTAAGTCTCTTTAGTTTA----------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------TTATTACAA----- --------------------------TTCTTTTCTTTTTAAAATTAAGGTATAATTG--------ACATGTAACATTA-T ATTACTTGCAGGGGCACAACAAAATGA-TTTGATATTTGTACACGCTGCGAAATTATCATCACAATAAGTCCCACTAACG TTTATTGCCTTACGCGGTTACAAAAGAACTTTT----------------------------------------------- ------------------------------TTTTT---------TTCACTGTCGTGTTTAT---TCTAA---ATTAAATA AATGTG-ACACTCACCGCTGGCTGCCACT-TACTAAATCAATTCC >Equus_caballus ACTCCACAGGAC-ATGTGCAC-------CCATCTGAG--TGGGTCCCTAGGGGAACAC-CTC------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------GTCACCGTCACATTTATTGCTCTAA---ATTAAATA AACGTG-GCACTCA--GCTGGCTGCCACTTTATCAGATCAATTCC >Ceratotherium_simum ACTCCATAGGAT-----ACAT-------GCACCTGAG--TGGGTCCCTGGGGGAACAC-CTC------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TTCACTGTCATGTTTATTGCTCTAA---ATTAAATA AATGTG-GCACTCA--GCTGGCTGCCACTTTACCAAATCAATTCC >Condylura_cristata GC---ACAGGGC-ATTC--AG-------CCAACCAAG--TGGGTCCCAGGAGAAACAA-CGC------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TTTGCTGTCATGTT--TTTGCTGAA---ATTAAATA AATGTGAGGACTCA--GCTAGCCGCCACTTTACTAAATCAATGCC >Erinaceus_europaeus ACTCCACAGGATAACCTCCACAGACAGACCATCTGAG--TGGGTCCCTGGAGAAACAG-CTC------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TTTGCTCTCGTGCTTGTTGTTCCAA---ATTAAATA AATCTG-GCTCTCA--GCTAGCTTCCACTTAAGAAAATAAATTCC >Homo_sapiens AC-ACACAGGAT-GCCCATGG-------CCATCTCAG--TGGGTCCCCTGGGGAGCTACCTC------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------T-CACTGTCTTGTTTATTGCTCCAA---ATAAAATA AATGTG-GCACTCA--GCTAGCCGCCACTTT-CCAAATCAATTCC Dog309_LINE >L1_CARN7_3END -------------------------------------------------------------------------------- ---------GACAGATGGTAACTAGACTTATTGTGGTGATCA-CTTCACAATGTATACAAATGTCGAATCACTATGTTGT ACACCTGAAACTAATATAACATTGTATGTCAATTATACTCAAATAAAAAAA----------------------------- ------------------------------------------------------------ >Canis_familiaris GGGGA--AACA------------TTGAGTTTTTTTCCTAAAGAAATAATCATTAGCCTT---A-ATAAAAATAA-GC-TC TTATTT------------TAACTAGACTTACTGTGCTGATCA-TTTCACAATATATATAAATACCTACTCTTTATATTAT CCACT-------AATGTAATGCTATATGTCAATTCTACCTCAATAAAAAT----ATGTAATTAA-AACTCA--------- GAATTT---ATCCC--AACATACATACATTTGTTCCTGTGTACACATATCTTCATTGAAA >Felis_catus GGGAA-ACATA--------------TTTTTTTATTCCTAAAGAAGTAATCATCAGACTT---A-ACAAAAATAA-GC-TC TTACTT------------TAACTAGATTTATTGTGCTGATCA-CTT-ACAATATATACAGATACCTACTCTTTATGTTAT CCACTTGAAACTAATATAATGTTGTATGTCAATTATACTTCAATAAAAAT----ACATGAATAAAAGCTCT--------- ATGTTC---ATCCC--AGCATATATACATTTGTTCCTATACACACATATCTTCATACAAA >Manis_pentadactyla GAAGG-AAACA-------TTGACAGACTTTTTTCCCCTAAAAAAATAATCATTAGACAT---AT--AAAAATAATAC-TC TTATTT------------TAACTAAACTTATTGTGCTAGCCA-TTTCACAATATATACAAATATCTAATCATT---TTGC ATACCTGAAAC--------TAATATAAGTCAATAATAGTT-AATAAAAAT--------AAATAA-GACTTG--------- ATATTT---ATCCC--AACACATATATATATGTTCCTAT--ACACATATCTTCATAGACA >Sus_scrofa GGGGG-AAGTGCTTTGTTCTGTGTGTG-TTTTTTTCCTAAAG----AATCACTAGACAT---AT--AAAAGTAAGGC-TC TTATTT------------CAACTAGAGTTATTGTATTGATCA-TTT-GCCGTGTAGGCAAATATGGAATCATTATGCTGT ACACCTTAAAC-----TAATGTTATAGGTCAATTAAACCGCCGTAGAGGT----AAATAATTGA---CTCA--------- ATGTT----ATCCC--A------------------------ACATATATCTTCATAGATT >Bos_taurus GGGGG-AAATG-----------CTTTATTTTCTTTTCTAAACAAATAATCACCAGACAT---ATATAAAAGTGGAGC-TT TTATTT------------CAGCTAGATTTATTGTACTGATAA-TTTCACCATCTATATAAATGTGGAATCATCATGTTGT ACATCTGAAAC----ATAATGTTATATGTCAATTATATCTCA--TATATT----ACTTATATAACATCTTAAACAGTAAG ATGTT----ATCCC--A------------------------ACATATATCTTCATAGAAT >Myotis_myotis GGGGG-AAACA----------TTGGTGTGCTTTTCCCTAAAAAAGCAATTATTAGACTT---ATATAAAAATAAGGC-TC TTATTT------------TAACTAGACTTATTGTGCTGATTA-TTTCACAGTATATAGAAATATCAAGTAATTATGTTAT ACACTGGAAACT---AATGTGTTGTATATCAGTTATACCTCAATAAAAAT----AAATAAATAA-GGCTCA--------- ---GTC---ATCCC-AATTGAACATATATATTTTCCTGAGCACACCTATCTTCATAGAAA >Rousettus_aegyptiacus GAGGG-AAAC------------------TTTTTTTTTTAAAGAAGTAATTATTAGAAAA---AT--AAAAATAAGGCTTT TTATTT------------TAACTAGTCTTATTGTGCTGATCATTTTTACAATATATACAAATATCAAATCATTATGTTGT ATGCCTGAAACT-ACATAGTGTTCTATGTCAATTTTACCTCAATAAAAAT----ATATAAATAA---------------- ---------TTC----ACCAAATATACATACATTTCTATATACACGTATCTTCATAGAAA >Equus_caballus GGGAG-AAACT----------TGGGTGGTTTTTTCCCTAAAGAAGTAATGTTTAGACTT---ATATAAAAATAAGGCTCG ATGTTT-------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------ATCCC--AACATATATACGTCTGTTCCTGTATACACATATCTTCATAGAAA >Ceratotherium_simum GAGGG-AAATA--------TGGGTGTG-TTTTTTTCCTAAAGAAGTAATCTTTAGACTT---ATATAAAAATAA-GCTGG ATGTTT-------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------ATCCC--AACATGTATACTTATGCTTCTGTATACACGTATCTTCATAGAAA >Condylura_cristata AGAAG-AAATA--------TTGGTCTATTTTTTTTTTTAAGGAAGTAATCACTGAGTTT---AT--AAAAATTAGGCTGG ATGTTT-------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------CTCCC--TACGTAGGAACCTATGTCCTT---TAGACACGTCTTCATAGAAA >Sorex_araneus GGTGG-AAATA-------------TTGGTTTTACCCCTAAAAAAGTAATCATTATAATT---ATATAAAAATATATCCCA GTGTTT-------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------ATCCC--AACATACA------TGTTTTTGTAGACTTACGTCTTCATAGAAA >Homo_sapiens AGGAGAAAATG---------GTGTGGGCTCTTTTTTCTAAAGAAGTAATCATTGGACTT---ATAA--AAATAACACTTG ATATTT-------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------ATCTGTCTGTATACACACACATACACTCATAAACACGTATCTTCATA-AAA Dog310_LINE >L1_CARN7_3END --------------------------------------------------------------TAACNTTGTATGGTGACA GATGGTAACTAGACTTATTGTGGTGATCA-----CTTCACAATGTATACAAATGTCGAATCACTATGTTGTACACCTGAA ACTAATATAACATTGTATGTCAATTATACTCAAATAAAAAAA-------------------------------------- --------------------------------------------------------- >Canis_familiaris ATT-----TCCCAGT--CAATACTGTTTGCAGTCATTTGTTT---GAAAAGTACGCATT--------------GGTGATG GATGTTAACTAGACTTAACATGGTGATTGTTTGTTTTGGCAACCTATGCAAAGATTGAATCATTATGTTGTACACATGAA ACGAATACGATGTTACATGTCAATTACATCTC--------------AAT--------------AAAAAATACATATT--- GG----ACAT-TGATA-TGAGCGAGGCATTGTCATAGCTTCTGGATACAACACGGGA >Felis_catus CTTTAATTTCACTCT--CAATATCGTATGCAATAATTTGTTT----GAAAGTATGTGTT--------------GGCAATG GATGTTAACTAGACTGACCGTGGAGATTA-----TTTTGCAG----TACAAAGATTGAATCATTATGTTGTCCACCTGAG ACTAATACTATGTTACATGTCAATTATATCTC--------------AGTTA------------AAAAAATACGTATT--- GT----ATTTTCGATATTGAGTGAGGCATTGTTCTAGCTTCTGGATACAACATGCAA >Manis_pentadactyla CTTTA-TTTCACTAT--CAATATCCCTTTCAGTAATTTGTTT----AAAAATATGTATT--------------GGTG-TG GATATTAGCTGGACTTA-TATGTTGATCA-----TTTTGCAATATAGACAAATATTGAATCATTATACTCT----TTGAA ACTAATGCAATGTTAGATGTCACTTATGTCTTGATGT--------------------------GCAAAGTAAGTATT--- GT----ACATTTAGTA-TGAGCCAAGCATCATTCTAGCTTCTGGATACAACATGGAA >Sus_scrofa CTTTAATTTCACTAT--CAATTTTCGTTTCAATAATTTGTTT----GAAAATATGTATT--------------CATGATG GATATTAACAGGACTTACTGTGGTGATCA-----TTTTGTAGTATATACAAGTATGAAATCGTTATGTTGTACACCTGCA ACTAATATAATGTTATATGTCAATTATATTTC--------------AATA-------------CAAATATATGTATA--- TGAATGACATTTAGTT-TGAGCCAGGCATTGTTTTAGCTTCTGGATACAGCATGGAG >Bos_taurus CTTTAATTTCGCTGT--AAGTATCCCTTTCAATAATTTGTTT----AAAAATATATATG--------------GATGATG GATGTAAACTGGATTTACTGTGGTGGTCA-----TCTGGCAGTATATACAAATATCAAATCGTTATGTTTTGCACCTGCA ACGAATATCATGTTATGTGTTGATTCTTTCCCTCCCTCCCTCTTTTTCTGTGTGTGTGTG---TGTGTGTGTGTGTA--- TGAGTGATGTTTAGTA-TGGACCAGGTATTGTTTGAACTTCTGGATACAGCATGGAG >Myotis_myotis TCT----TTCATTAT--CAGTATCCTTTGCAATAATGTGTTT----AAAAATATGTATT--------------GGTAATG GATGCTAATTAGACTTATTGTAGTGATCA-----TTTCACAATAAATACCAATATTCAGTCATTATGTTGTACACCTGAA ACTAATACAATGTTACTTGTCAATTACCTCTC--------------C----------------ATAAAAAATGAATT--- GT----ACATGTACTA-TAGGCCAGGCATTGTTCTAGCTCCTGGATACCACATGGAA >Rousettus_aegyptiacus CTGTAGTTTCACTAT--TAATATCCTACATAATAATGTGCTT----AAAAACAT-------------------GGTAATA GATGTTAACTAGACTGACTTTGGTGATCA-----TTTCACAATATATACAAATTTTGAATC---ATGTTGTATACCTGCA ACTAATATAATGT----TGTCAGTTATATTGC--------------C----------------ATTAAAAATATATC--- GC----ACAT-TAATA-TGAACCAGGCATT-------------GATAAAGCAT-AAA >Equus_caballus CTTTAATTTCACTAT--CAATATCATTT-CGCTAATTTGTTA----AAAAATATGTATT--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- GT----GCATTTAACA-TGAACCAGGAGTTGTTCTAGATTCGGGATAAAATACGGAA >Tapirus_indicus CTTTAATATCACTAT--CAATATCTTTTTCAATAATTTGTTT----AAAAATATGTATT--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- GT----ACATTTAATA-TGAGCCAGGCATTGTTCTAGCTTCTGGATACAACTTGGAT >Condylura_cristata CTTTAAAGTCACTCT--TGATATCCTTTTCAAGCAGTTATGT----TAAAATATATTTT--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- GC----ACATTTTATA-TGCACCAGGCATT-TTCTGGCTTCTGGATGCAACA-GGGT >Solenodon_paradoxus CTTTAATTGCACTAT--CAGTATTCTTTTCAGAGCTGTATTT----TAAAACATGTATT--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- GT----ACATTTAATA-CGAAC-AGACACTCTTCTAGCTTCTGAATACAACATGGGT >Cavia_porcellus CTTTAACCCCAGTCCCACAACATTCTTGTCTACAATCTGGTT----CATAATGTTTTAT--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- GT----TTATTTAATA-TGAGCCAGGCATAGCTCTAGCTTCTGGATACAACACGAGA Dog311_LINE >L1_CARN7_3END -------------------------------------------------------------------------------- -------TTTTTTTATTTGAG-TATAATTGACA--TACAATGTTATATTAGTTTCAGGTGTACAACATAGTGATTCGACA TTTGTATACAT-----------------------------------TGTGAAGTGATCACCACAATAAGTCTAGTTACCA TCTGTCACCATACAANGTTANTACAAT----------------------------------------------------- ------------------------------- >Canis_familiaris GTGGTGGATACTGCTGACAAAGAACTTGAAGAAGCAAAGGTATTACATTT---ACCACTAAT-AGGA--------ATTTT TATT--------------G--TTGTAACTGACA--TATAGCATTATATTAGCTCGAGGTGTACAATATGAT-------TA TTTCTATATAT-----------------------------------TGTGAAATGATCACTGCAATAATTCTAGTTAGCA TTGG--------------------------AC----TACTGATCAGGATTTTAATT---CTACTTTAAAC-ATCATGTA- ------AGTGCA--ATGGAAAAAGTGACATT >Felis_catus GTGGTGGATACCGCTGACAAAGAACTTGAAGAAGCAAAGGTATTACATTT---ACCATTGAT-AGGA--------TTTTT TATT--------------GAGTTACAATTGACATGTATAGCATTATATTAGTTCTAGGTATATGACAAAATGATTCACTA TTTGTACATAT-----------------------------------TGTGCAATAATCACTGCAATAATTTTAGTTAGCA TCTA--------------------------AC----TACTGATCAGGATTTTAATT---CCTCTTTAAAC-ATCATATAA TTATTAGATGCAGTGTGGAAAAAGTGACATT >Sus_scrofa GTGGTGGATACTGCTGACAAGGAACTTGAAGAAGCAAAGGTATTAGATTT---ATCACTGATGAGGT--------TTTTT AATT--------------GAGGTATAATTGATA--TACAACTTTATATTAGTTTCAGGGGTACAACCTAATGATTCAATA CTTGTATATAT-----------------------------------AGCAAAATGATCACCACAGTAAGTCTAATTAACA TCCA--------------------------AC----TACTGATCAGGATTTTTGTT---CTGCTTTAACC-ATCATACAA TTATT-AATGCA--ATGGAAAAGGTGACATT >Bos_taurus GTCGTGGATACGGCTGACAAGGAACTTGAAGAAGCAAAGGTACTGGATTT---ATCACTAATCAGGT----TTTTTTTTT AATT--------------GAGGTATAATGGACA--TATTACATTATGTTAGTTTCAAGTGTACAACATAATGAATCGATA TTTGTATGTAT-----------------------------------TGCAAAATAATCACCATAACAAGTCTAGTTAACC TCCA--------------------------ACTAGTTACTGATCAGGATTTTAGTT---CTA-TTTAAAC-ATCATGCGA TT----AATTCA-------------GGCTTC >Myotis_myotis GTGGTGGATACTGCCGACAAGGAACTTGAAGAAGCCAAGGTATTAGACTT---ACCACTGAT-AGTTTTTTTTTTTTTTA AATT--------------GATGTATAATTGACA--TATGGCATTATATTAATTTCAGGTGTACAACATAATGATTCAATA TATATATATATATATATATATATATATATATATATATATATATATATATAGTGAAATGACTACAATAATTCTAGTTAACA TCTG--------------------------AC----TATTGATCAATATTTTAATT---CTACTTTAAAT-ATCATGTAA TTATTAAATGCA--AAGGAAAAAGTGACATT >Rousettus_aegyptiacus GTGGTGGATACCGCTGACAAGGAACTTGAAGAAGCAAAGGTATTAGATGT---ACTGCTGATCAGAA-----TTTTTGTT AACT--------------GAGGTATAATTGACA------------TATTAGCTTCAGGTATACAACATAATGATTCAATA TTTGTATATAC-----------------------------------TGTGGAGTGATCAC---AATAAGTCTGTTTAACA TCCA--------------------------AC----TACTGATCAGGATTTTAATT---CTACTTTTAAC-ATCCTGTAG TTACTAAATGTA--ATGAAAAAAGTGACATT >Equus_caballus GTGGTGGATACCGCCAACAAGGAACTTGAAGAAGCAAAGGTACTAGATTT---ACCACTGATCAGGA---------TTTT AATT---------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------CTGCTTTAAAC-ATCATGTAA TTATAAAATGCA--GTGG-AAAAGTGATATT >Ceratotherium_simum GTGGTGGATACTGCCGACAAGGAACTTGAAGAAGCAAAGGTACTAGATTT---ACCACTGATCAGGA---------TTTT AGTT---------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------CTACTTTAAAC-ATCATGTGA TTGTTAAATGCA--GTGGAAAAAGTGATATT >Condylura_cristata GTGGTGACTACTGCGGACAAGGAACTTGAAGAAGCAAAGGTACCAGATTT---ATCATTGATCAGGA---------TTTT AATT---------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------GTAATTTAAAAGATCATGTAA T----AAGTATA------------TGACAGT >Erinaceus_europaeus GTGGTGGATACTGCTGAAAAGAAACTTGAAGAAGCAAAGGTACTAGATTT---A-AACTACTCAGGA---------TGTT GATT---------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------CTAATTTAGAC-ATGATGCAA CTATTATGTGCA--GTGAGAAAAGTGACATT >Homo_sapiens GTGGTGGATTCCGCCAACAAGGAACTTGAAGAAGCCAAGGTACCAGATTT---ACCACGGATAAGGA---------TTTT AATT---------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------TTACTTTAAAC-ATCATGTAA TTTTTAAATGCA--ATGGAAAAAGTAGCATT Dog312_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------GGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGTACAG CATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGA-TCTTAAGTGTTCTCACCACA CACAA---AAAAAT--------------------------------GGTAACTATGTGAGGTGATGGATATGTTAATTAG CTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTAT TTGTCAATTATACCTCAATAAAGCTGGAAAAA------------------------------------------------ ---------------------------------------------------------------- >Canis_familiaris GTTCCCTCCTCGTGCTTATCTGTATCCAGTATTCATTCTGGCAC---------------AAAATC---ATGATTCAGAAG ACGG-------------CAGTCAAAAGGTATAAACCTCCAGTTAC--AAGATAAATAAGTACCAGGGATGTAATGTATAA CCTGATAACTATAGTTCGCACTGCCGCGTGGTATGTAGGAAT---GTTAAGAGAGTAGATTCCTAAAAGTTCTCAGCAC- ---AAGGGAAAAACCCTTCTTCTTGTTCTAC--TTTTCTTTTTT---GTATCTGTATGAGATGATGG--ATGTT-----G ACTTATCGTGGTAATCACTTCACC--ACATATGTAGATCACAGCA-TATGCTGCCCACCTTAAACT--TATCGTG--TCC ATGTCAAGAATATCTCCAGAAAACTGGGGAAATA---AAGGTT---AAGAAGA---GAGGAA------------ACCGTA G----------AGGAGGA----ACG--GACACTCGCCTCG----------CCACTGATGCCTAG >Felis_catus GGTCTCTCCTAGTGCTTATCTGTATTCAGTATTCATTTTGGCAC---------------AAAGTT---ACAATTCAGAAT AAGG-------------CAGCCAAAAGGTACAAACTTCCAATTAT--AACATAAATAAGTACTAGGGATGTAACGTATAT CCTGATGAC-GTAGTTAACACTGCTGTATGGTATATATGAAA---GTTGAGAGTATAGAATTATCAAAGTTTTCATCAC- ---AAGCAAAAAATTTCTTTTCTTTTTCTAC-----TTGTTTTT---GTATCTATATGAAATGTTGG--ATGTT-----A ATTTAATGTGGTAATCATTTCACA--ATATATGTAGGTTAAATCATTATGGTGTATGCCTTAAACTCATATAGTG--TCT ACGTTAATTACATCTCAGTAAAACTGGGGAAACA---AAAATT---AAGAAGA---GAGGAA------------AAGGTA G----------AGAAAGAACTGACT--GACATAGTTCTCTCC--------CCG--GGTGCCCAG >Manis_pentadactyla GTTACGACCTAGTGCTTATCTGTATTTGGTATTCATTTTAGCCC---------------AAAGTT---AAGATTCAGAAG AAGG-------------CTGCCAAAAGGTACAAACTTCCAGTTAT--AAGGTAAATAAGTAGTAGGGATGTAATGTACAA CACAATGACTATAGTTGAGACTACTGTATGACATATA-----GTTGTCAAGAGAGTA-AATTCTGAGAGTTCTCATCACA GGGGAAAAAAAATTATTTTTCCATT-------------TTTTTT---ATGTCTATATGAGAAAATGG--ATATTAATTAA GCTTATTGTGATAATCATTT---A--TGACATGTAGTTTAAATCATTATGCTACATATATTAAGCTTCTACAGTGC-TGT GTATCAACTATATTGTAATAAAACAGGGAA---A---AAGATT---AAGAAGA---GAAGAA------------------ ----------------------ACT--GACAGACTTCTCTCT--------CCATGGATATCTAG >Sus_scrofa GTTCCCACCTAGTGCTGTTCTGGATTCAGTATTCCTTTTGGCAC---------------AAAG-A---AAGACTCAGAAG AAGG-------------TAGTCAAAAGGTGCAAAATTTCAGTTAT--AAGATAATTAGGTCCTA-GGATGTAAAGTAGAA CCTGATGGGTACAGTTAACCTTGCTGTATAATATATATGACTGTTCTTT-GAGAGTA-AATCCTAAGGGTTCTAATCAC- ----AAGGGAAAATTTTTTTTCTTTTTCTAT-------TCTTTT---GTATCCAGATGAGATGATGG--ATGATAACTAA AATAACTGTGGTAATCGTGTCAC---ATTCTTAAAAACCAAATCATTATGCTGTACACCTTGAACGTGTACAGTGC-TGT ATGTCAATTGTGTCTCAATAAAACCGAGGGA--A---GAGATT---AAGAAGA---AAGGAA------------AAGACA G----------AGAAGGAACTGATT--GACACACTTCT------------CTACTGATACCTAA >Tursiops_truncatus GTTCCCTCCTAGGGCTTCTCTGAATTCAGTATTCATTTTGGCAC---------------AAACTT---AAGACTCATAAG AAGG-------------TAGTCAAATGGTACAAAATTCCAGTTAT--AAGATAATTAGGTACT-GGGATGTAATGTAGAA CCTGATGACGATAGTTAACACTGCAGTATGATATATACAACAGTCGTTAAGAGAATA-AATCCTAAGAGTACTTGTCACT CAGCACGGGAA------TTTTTTTTTTCTAC--TTTTTGTTTTT---GTACCTATGCGAGAGGATGC--ATGTTAACTAA GGTTATTGTGGCAATCATGTCACA--ATACATGTAAGTCGAATCATTATGCTGTACACCTTGAACTTGTACAGTGC-AGT ATGTCAACTGTATCTCAATAAAACTGGAAAAAAA---AAGATT---AAGAAGA---GAGGAA------------AGGACA G----------AGAAGAAAGTGATT--GACACACTTTTCTCT--------CTGTTGATAACTAG >Equus_caballus GTTCTCTCCTAGTGCATATCTGTGTTTAGTGTTCATTTTGGCACA--------------AAAGTT---AAGATTCAGAAG AAGG-------------TGGTCAGAAGGTACAAACTTCCAGTTGT--AAGATAATTAAGTACTAGGGATGTAATATAGAA TGTAATGACTGTAGTTAACAGTGTCATATAGTATATATGAAAGTTTTTAAGAGAGTA-AATCCTAAGAGTTTTCACCAC- ---AAGGGAAAATTTCTTTTCCTTTTTCTAC-------TTTTTT---GTATCTCTATGAGATGGCAG--ATGTTTACCAA ATTTATTGTGGTAATCATTTCATG--ATATATGTAAGTGAAATCATTGTGATATACATCTTAAACTTATACAGTGC-TGT ATGTCAATTATATATCAATAAAACTAGGAACAAA---AAGGTT---AAGATGA---GAGAAA------------AGGGCA G----------AGAAGGGACCAACA--GACACACTTCTTTCT--------CCA--GATGCCTAG >Ceratotherium_simum GTTCTCTCCTAGTGCCTACCTGCATTCAAGGTTCATTTTGGCAC---------------AAAGTT---AAGATTTAGAAG AAGG-------------CAGTCAAAAGGTACAAACTTCCAGTTAT--AAGATAATTAATTACTAGGGGTGTAATGTACAA CATAATGACTATTGTAAACAGTGCCATATAGTATATATGAAAGTTGTTAAAAGAGTA-AATCCT--AAGTTTTCACCAC- ---AAGGGAAAAAATTTTTTTCTTTTTCTTTCTATTTTTTTTTTTCGGTATCTATATAAGATGAGGG--ATGTTAACCAA ACTTATTCTGGTAATCATTTCATA--ATGTATATATGTCAAATCATTATGTTGTATGCCGTAAACTTAGACAGTGC-TAT ATGTCAATTATATCTCAATAAAACTGGGAAAAAA---AAGATTAAGAAGAAGA---AAGGAA------------AGGGCA G----------AGAAGGAACTGACA--GACA--CTTCTCTCT--------CCACAGATGCACAG >Myotis_myotis GTTCTCTTCTAGTGCTCATCTGT-----GTATTCATTTTGGCAT---------------AAAGTT--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------AAGATTCAGGTGAAGG---GAGGAA------------AGAGCA G----------AGGAGGAACTGACT--GACATACTTCTCTCT--------CCACTGATGC-TAG >Rousettus_aegyptiacus GTTCTATCCTAGTGCTTAT-----TTTAGTATTTATTTTGGCAC---------------AAAGTG--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------AAGATTCAGAAGAAAG---GAGGAA------------AGAGCA G----------AGAAAAAACTGAAT--GATA---TTCTCTCT--------ACATTGATGCCTAG >Condylura_cristata GTTCCCTCCAATTGTTTGTCTGT-----GTATTCATTTTGGTGG---------------ACAGTT--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------AAGAATCAGAAAAAAA---GAG---------------AGGACA G----------AGAAGGAACTGACT--GACA----TCTCTTT--------TCACTAATGCCTGG >Uropsilus_gracilis ATTCTCACCTAGGACTTGTCTGT-----GTCCTTATTTTGGTGC---------------AAAGTT--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------AATATTCTGAAGAAGA---GAGGAAAGGACAGAAGACAGGACA GAGGAGAGGATAGAAGGAATTGACT--GAC---CTTCTCTCCTGCTTAGATCACTGATACCTAG >Homo_sapiens ATTATTCCCAAGTGCTTATCTGT-----GTTTTCATTTTGGCACAAATTTTTATTCTACAAAGTT--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------AAGATTCAGCAGTAAA---GACAAA------------AGGGCA G----------GGAGGGAACTTACTCTGATATATTTCTTTCT--------CAGCTGATGCCTAG Dog315_LINE >L1_CARN7_3END -------------------------------------------------------------------------------- ----------------------------------------------------TTTTTTTATTTGAG-TATAATTGACATA CAATGTTATATTAGTTTCAGGTGTACAACAT------------------------------------------------- --------------------------------------------- >Canis_familiaris CATTTTAAATATGTGGGACCTGGC---CAGAAATG-GA-CTCTGTTGGA-TTTTA---CAAAAATTTACATTTCC----- -------------CTTTTTTTATTTTTTAAAGTTAAAACATTTTTT--------------ATTAAGGTATAATAGACATA CAACGTTATATTAGTTTCAGA-------------TATGCTTTATATTTCT---AA-GGATTTATTGGCTTTCAGG-AAA- CAGTCAGGGTGGGAAAAGTTT------------AGAAATGTAGTT >Felis_catus CATTTTATACATGTGGGACCTGAC---CAGAAA--------CTGTTGAA-TTTTG---TAAGA-CTTAAATTTCT----- -------------CTTTTTTTATTTTTCAAAGTTCGAAAGGTTTTC--------------ATTAAGGTATAACTGGCATA TAACAT---ACTAGTTTCGGG-------------TAAAATTTATATTTCT---GA-GGGTTTGTCTGCTTTCAGG-AAA- CAGTCAAGGTGGGAAAAGTTT------------AGAAATGTAGTT >Manis_pentadactyla TATTTTATATATGTAGGACCTGAC---CAGAAATATGA-TCCTATTGGG-TTTTA---TAAGA-TTTATCTATTT----- --TTTAATTAAAATTATTATTATTATTATTATTATTATTATTATTA-------------TACTGAGATATAATTGGTATA TAACATTGTATCAGTTTCAGG-------------TAATATTTATGTTCCC---AA-GGGATTATCTTCCTTCAGG--AA- ----CAGAGTGGGGAAAGTTT------------AGAAATGTAGTT >Sus_scrofa CATTTTATATACATGGGACCTGAC---CATACATT-------TGTTGGATTTTTA---TGAGA-TGTATGTCTTT----- ----------------TACACATTTTTAAAATTAAAAAAATTTTTT-----------AAAATTGACTTGTAATTGGCATA TGACAT--TGTTAGTTTCACG-------------TAAGATTTATATGGTT---AG-GGGTTTATCTGCTGTTACG-AAA- ----CAGGGTGGGAAAAGTTT------------AGAATTATAGTT >Tursiops_truncatus CATTTTACATATGTGGGACCTGAC---AAGAGATTTAG-CTCTATTGGA-TTTTA---TCAGA-TTTATACTATC----- -------------TTTTAAACACTTTTTAAAATTTAAAATATATTTAAATTATTTAAAAAATTGAATTATAATTGGCATA TAACATTATGTTAGTTTCAGG-------------TAAGATTTATATTGTT---AA-GGGTTTATCTGCCTTTAGG-CAA- ----CAGGGTGGGAGAAGTTT------------AGAAATGTAGTT >Myotis_myotis CAT-------ATGAGGGACCTGAC---CAGAAGTGTGA-CTCTGTTGGA-TTTTA---TAAGA-TTTATATATCT---AT TTTATAATTAAAAGTGTTTTAATGTTT----------AAATTTTTT--------------ATTGAGAAATGATTGGCATA TAGCATTATGTGAATTTCAGG-------------TAAGAGTTCTATTTCC---AA-AGGTTTATCGACTTTCAGG-AAA- CAATCAGCATAGGAAAAGTTT------------AAAAATGTAGTT >Rousettus_aegyptiacus CAT-TTATATATGAGGGACTCGAC---CAGAAATTTGA-CCCAGTAGAA-TTTTA---TAAAA-TTTGTATTTCT----- --TTTTATAATTAATCTTTTTAATTTT----------TAATTTTTT--------------ATTGAGGAATAATTGGCATA TAACATTATAT----TTCAGG-------------TAAGATTTATATTTCT---AA-AGGTTTATCTACCCTCAGG-AAA- ----CAGATTGGGATTAGTTT------------AGAAATGCAGTT >Equus_caballus CATTTTATATATGTGGGACCTGAC---ATGAAATTCAA-CCCTGTTGGA-TTTTA------------------------- -------------------------------------------------------------------------------- ----------------------------------TAAGATTTATATTTCT---AA-GGGTTTATCTGCCTTCAGG----- -----------GAAACAGGTT------------AGAAATGTAATT >Ceratotherium_simum CATTTTATAAATGTGGGACCTGAC---GTGAAACTTAA-CCCTGTTGTA-TTTTA------------------------- -------------------------------------------------------------------------------- ----------------------------------TAAGATTTATATTTCC---AA-GGGTTTATCTGCCTTCAAGAAAA- ---------------CAGTTT------------AGAAATGTAGTT >Condylura_cristata CTTTTTGTACATGTAAGACCCCACAAGAAGAAATTTGA-CCTTGTTGGA-TTTTA------------------------- -------------------------------------------------------------------------------- ----------------------------------TAAAATTTACATTTTT---AA-GTGTATTTCTGCCTTCAGGAAAA- TAGTCAGGACAGGAATAGTTTAGAAGTTCAGAAAGAAATGTAGTT >Sorex_araneus TTTAAAATATATGTGGGACTTGAC---AAGAAATTCTG-CCTTGTTAGA-TTTTA------------------------- -------------------------------------------------------------------------------- ----------------------------------TAAGATT---ATTTTT---AAAGGGTTTATCTGCCTAAAGG----- -------GGTAGGGAAAGTTT------------AGAAATAT--TT >Cavia_porcellus TTGTTTACATACGTAAAAC-TGTC---ACAAAATTTGACCCCTGTTGGA-TTTTT------------------------- -------------------------------------------------------------------------------- ----------------------------------TAATATTTATATTTCT---AA-G------TTTGTATTCAGGAAAAC CACTCAGGA--GGAAAGGTTT------------AGAAATGTAGTT Dog318_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------TTTTTCCAGCTTTATTGA GGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATATACGTATACATTGTGAAATGA TTACCACAATCAAGC----TAATTAACATATCCATCACCTCACATAGTTACCATTT------------TTTTGTGTGTGG TGAGAACACTTAAGATCTACTCTCTTAGCAAATTTCAAGT---------------------------------------- ------------------------------ >Canis_familiaris GATAA-CTCTGCCTGTAGGGCACAACTGGTGAATCAATTAATCCATCCGTCCATT---CATTCACTTTTTTTTGTTCTTT TTTTTTTAAAGACTTTATTTATTCATGAGAGACACAGAGAGAGGCAGAGACATAGGGAGAGGGAGAAGCAGGCTCCATGT GGGGAGCCCGATGCAGAACTAGATCCTAGGACCCAGGATCATGACCTGAGCCAAAGGCAGATGCCCAACAGCTGAGCCAT CCAGGTGCCTCTTTT---TTTTTGTTCTTGAA-CTCCCTCAAAT------CTTCTTTTTTCCCATTTCCACCTTTATTGA GATATAATATAT-----AACGTTGTGTAAGTTTAAGGTGTACAACATATTGGTTTGA------TATATATTGCAAAATGA TTACCACCATAGCTT----TATCTAATACCT-CATCACATCAATTAAAACACCTCC------------CCTTTTTTGTGG GGATAACATTTAAGATCTACTTTCTTGGC-AAC----------CATTCACATTTATT---GAATGCTTTCTACATGCCAA GTCCTGTGGGAGAGGAAGACAT-GGTATCA >Felis_catus GATAA-GTCTGCGCATAAGGTACAATTAGTGAATCA----ATTCATCCATCCATC---TGTTCACATT------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------TATT----TTTTGTTCTTGAAGCCCCCTCAAAT------CTTCTTTTTTCCTGTTTCTACCTTTCTTGA GATATAATTGATCTAT-AACATCGTGTAAGTTTAAGGTATACAACGTATTGGTTTGA------TATATGCTGCAAAATGA TTACCAGCATAGTTT----TAGCTAATACCT-CATTCTGTTGATTAAACATACCACCCCCCCCCCCAACCTTTTTTGTGC TGAGAACATTTAAGATCTACTTTCTTAGC-AAC----------CATTCGCATTTATT---GAATGCTTCCTGCATGCCAA GCCCTGGGGGTGCAGAAGAAGT-GTTCTCC >Manis_pentadactyla NNNNNNNNNNNNNNACAGGATACAACTAATGAATCA----ATTCATCCATCCATT---CTTTCACATT------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------TACT----TTCTGTTCCTGAAGCCCTCTCATAT------TTTTTTTTTTGCTGTTTCTAGCTTTATTGA GATACAACTGATATAT-AACATTGTGTAAGTCTAAGGTGTACAACATATTGTTTGGATACAC-CATATATTGCAAAATAA CTGCTACCAAAGCTT----CAGCTAATGCTT-TTTCACATCACTTAAATATCATATGGTATGTGTGGTATGTGTGCATGG TGAGAACATTTAAGATCTGCTCTCCTAGC-AAC----------CATTCACATTTACT----AGTGCTTCCTCCATGCCAG GCACTGCGGCAGAGGAAGATGCCAGTATCA >Sus_scrofa GATAA-CTCTGCCCAAAGGATGCAATTCATCC--------ATCCATCCATCCATC---CATTCACAT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TT-----TTTGTTCTTGAAACCCCTTCATGT----CTTTTTTTGGGTGCTGTTTCCAGCTTTATTGA GCTCTAATTGATACAT-AACATTGTGTTTGTTTAAGGGGTACAACCTATTGATTTTATAAACTTACATATTGTAAAATGA GGACTCCCATGGCTT----TAGCTAACACCT-CTTCACATCACCTAAATGCCTTTGTGTGTGT-----GTGTGTGTGTGG TGAGAAAGTTTATGATTTACTCTCCTAGC-AAA----------CATTCACATTTATT---AAGGGCTTCCTATATGTCGT GCACCATGGGGGCAGAAGACACACATATTA >Bos_taurus GATAA---CTGCCCACTGGATACAATTAATAA--------ATCCATCCATCCGTC---CATTCACATT------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------TATT---TTTTTGTTCTTAAAGCCCCCTCATATACTTTTTTGTGTGTATGCTGGTTCCAGCTTTACTGA GCTAAGACTGATATAT-CACATTGTGGTAATTTAAGGGGTATAACCTATTGATTTTATGCACTTACATACTGTAAAATGG TGACCAGCATAGCTTAGTATGG-TGAAAGCT-TATCACATCACTTAAATAAAAT--CTTTTTT-----TTTTTTTGGCAC TGAGAATGTTTAAGATCTACCCTCTTAGC-AAC----------CATTCACATTTATT---GAGGGCTTCCTATATGCCAG GCACTATGGGAGCAGAAGATGCAAGTATTA >Equus_caballus GATAA-CCCTGTCCACAGGATACAATTAATGAATCA----ATTCATCTATCTATT---CATTCGTATT------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------TATT----TTTTGTTCTTAAAGCCCCCTCATCT-----TTTTCTTTTTTGCTGTTTCCAGCTTTACTGA GATATTATTAACATAT-AACATTGTGTAAGTTTAAGTTGTACAATGTATTGACTTGATACCCTTATATATTGCAGAATGA TTAGCACC-TAGTGT----TAGCTAACATCT-CATCACATCACTTAAATA--------GCATT-----TCTTTTTCGTGG TGAGAGCATTTAAGATCTACTCTCTCACCAAAT----------CATTCATATTTATT---GAGTAC-TGCTACATGCCAA GCACTGGGGGAGCAGAAGACACAAGTATCA >Ceratotherium_simum GATAA-CCCTGCCCATAGGATACAATTATTTAATCA----ATTCATCCATCCATT---CA----CGTT------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------TATT----TTTTGTTCTTGAAGCCCCCTCATAA-----CTTTTTTTTTTGTTGTTTCCAGCTTTATTGA CATATAATTCACATAT-AACATTATGTAAGTTTAAGGTGTAGAATGTATTGATTTGATACACCTATATATTGCAAAATGA TTACCACC-TAGCTT----TAGCTAACATCT-CATCACATCACTTAAATA--------TTATT-----TCTTTTTTGTGG TGAGAACACTTAAGATCTACTCTCTTAGC-AAT----------CATTCATATTTACT---GAATGCTTGCTATATGCCCA GCACTGTGGGAGCAGAAGACATAAGCATCA >Myotis_myotis GATAA-CTTTGCCCACAGGATTTGATTAATGAATCG----ATTCACCCATCCATC------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------CATTCACTTTTATT------TGCTTCTTATATGCCAA GCACTGTGGGAGCAGAAGATATAAGTGTCA >Rousettus_aegyptiacus GATAA-CTTTGCCTGCAAAATACAATCAATGAATCA----ATTCATCCATCCATA------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------CATTCTCATTAATC---AACTGCTTTCTCAATGCCAA GCACCATGGGAGTAGAAGACACAAGTATCA >Condylura_cristata AACAGTTTCTGGCCAGAGGACACCATTAATGGGTCA----TTTCCTCTATCCATC------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------CACTTACATTTATT---GAGTGCTTCCTGTATGCCCA -CATTGTGGGAGTGGAAGACACCAGTATCA >Solenodon_paradoxus GAGAG-TTCTGTCCACAGGAT---GTAAAAGAATCA----TTTC----ATCCACT------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------CATTCCCTTTTATA---GAGTCCTTCATATATTCCAA GCACTGTGGGAACAGAGGTTCCAAGTATCA >Homo_sapiens GATAA-CTATGCCCACAGGGTACAATTAATGAATTA----ATTCATCAATCCACT------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------CATTCACATTTATC---GAATGCTTCCTGTGTGCCAA GCACTGTGCGAGTAGAAACCACAAGAATCA Dog319_LINE >L1_CARN7_3END -------------------------------------------------------------------------------- ----TTTTTTTATTTGAGTATAATTGACATACAATGTTATATTAGTTTCAGGTGTACAACATAGTGATTCGACATTTGTA TACATTGTG----------------------------------------------------------------------- ----- >Canis_familiaris GGTTCAATAGCTGCTAACTG-TTTATTTTAATTATTGTT----TGTTATTATTATT---GCAAACTATAGTTCTTT---A AAAA--AGCTTATTGAGGTATAATTGATGTAC---ATGATATT-TTTTTAAGTGTATAACATAATGATTCAATATCTGTA TA----------ATAAACCATATTTACTT---ATAGTCTATGGGCTACTC-AGAAAAA--AACCCAGATGTTTCATTGGC TCTGA >Felis_catus GGTTCAATAGTTGTTAATTG-TGTATTTTAATCATTGTT-TTTTATTATTATTATT---GTAAACCATATTTCTTT---A AAAA--TTTTTATTGAGGTATAATTGATGCAC---ATTATATT-ATTTTAGGTGTACAACCTAATGACTCCATATTTATA TA----------ATAAACCATATTCCTTT---ATAGCCTACAGGTTACTT-AGAAAAA--AACCCAGATGTCTCATTGGC TCTGA >Manis_javanica GGTTTAATAGCTGCTAATTA-TTTACTTTAATTATTATT----GG-------TATT---ATAAGCCATATTTCTTA---A AAAATTTTTTTGTTGAGGTATATTAGACACACAATATTATATTAGTTTCAGGGATACAGTATAATGATTCAATACTTGTA CA----------ATAAACCATATTTCTTT---ATAACCTGTGGACTACTT-GGAAAAA----CTTAGATGTCTTGTTAGT TCTGA >Sus_scrofa GGTTCAGTAGCTGCTAATTG-TTTATTATGG-----------------------TT---GTAAACTATC----------- ---------TTATTGGGGTATAGGTGACATACAACATTATATTAATTTCAGGTATAGCGCATAATGATTCAGTATTTGTA TA----------ATAAACCATATTTCTTT---ATAGTCTGTGGCCTACTT-GGGAAAA--AACCTAGATGTCCCATCAGT TTTGA >Bos_taurus GGTTCAATAGCTGCTAATTG-TTTATTTTAGTT-----------------ATTATT---GTAAATCATA------T---A AAAT--ATTTTATTAAGGTAGTATTGACACACGACATTATATTAACTTCAGATACACAACATAACGATTCTGTAACTATA ------------GTAAACCATATTTCTTT---ATAGCTTGTGGACTACTT-GGGGAAA--AGCCTAGATGTCCTGTTGGC TCTGA >Myotis_myotis GGTTCAATAGCTGCTAATTA-TTTACTTTCATTATTGCT-------TATTATTAGT---GTAAAC-TTATTTCTTA---- AAAA--ATTTTATTGAGGTATAATTGACATAATACATTATATTAATTTTAGGTATCCAACATAATGATTTGATATTTGTG TA----------ATAAACCATATTTTTTT---ACAGCTTATGGACTACTT-GGAAATA-AACCTTAGATGTCTTGTTGGC CCTGA >Rousettus_aegyptiacus GGTTTAATAGCTGCTAATTGTTTTTTTTTAATTATTGTT-------TATTATTAGT---ATAAACCATATTTCTTT---- AAAA--TTTTTATTGTGGTATAATTGATATAC---ATTATATTAATTTCAGGTGTACAACATAATGATTCCATATTTATA TA----------ATAAGCCAGATTTCTTT---ATAGCCTGTGCACTACTTGAAAAAAAAAATCTTAGCTGTCTTGTTGGC TCTGA >Equus_caballus GGTTCAATAGCTGCTAGTTA-TTTATTTTAATTATTGCT----CATTATTATTATT---GTAAACCATATTTCTTT---- -------------------------------------------------------------------------------- --------------------------------ATAGTCTGGCAACTACTTGGGAAAAA--GCCCTAGAGGTATTGTTGGT TCTAA >Ceratotherium_simum GG-TAAATAGCTGCTAATTG-CTTATTTTACTTATTGCT----TATTATTATTATT---GTAAACCATATTTCTTT---- -------------------------------------------------------------------------------- --------------------------------ATAGCCTGGGGACTACTT-GGACAAA--ACCCTAGATGTCTTGTTGGC TCCAA >Condylura_cristata AGTTCAATAGCTGCTAATTG-CTTGTTTTAACTATTGTT----TTTTATTACTGTT---GTAAACCACATTTATTT---- -------------------------------------------------------------------------------- --------------------------------TTAGTCTGTAGACT--------------------------TTGCTGGA CCTGA >Erinaceus_europaeus GGTTCAATAGCTGCTAATTG-CTTGTTTTAATTGTTGTTTGGTTATTAATATTATG---GTAAACTATAATCCTTT---- -------------------------------------------------------------------------------- --------------------------------ATAGTCCAGGGACTACTT-GGAAAAATGGTCTTAGATGATTTATGGGT TTTGA >Homo_sapiens GGTTCAGTACCTGCTAATTG----------CTTATTGTT----TATTATTAATATT---ATAGACTATATT--TTT---- -------------------------------------------------------------------------------- --------------------------------ATACCCTGTGGACTACTT-GGAAAAA---GCTTTGATGTC---TTAGC ACTGA Dog321_LINE >L1MA9_3END ------------------------------------------------------------------------------TT TTT----CCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGG----TGTACAACGTGATGTTTTG ATATACGTATACATTG-TGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTACCATTT--- ------------------------------------------------------------------------ >Canis_familiaris TTTATATCCTAGTTTATATCAGTTGTC----ATGCAATAAGGCCATGGAAGATA---CTAATTTTGCTGTT-CTT---TT TTT---TCCAGTTTTACTGAAAAATAATGGACATGCATCA-TTCTATAACTTTAAAG----TGTACAGTGTGATGGTTTG ATTTAC--ATATATTA-TGAAATGGTTACCATTATAGGTTTAGTTAAC--ATCCATTATCTCATT--------------- TTCTTTTTTTCATTATCTC---ATATTCATT-TTGCTTTTATGCTGACAG-TTTTTGCTGGCACAACACACT >Felis_catus TTTACATCCCAGGTTCCATCAGTTGTC----ATGC----AGGCTATGGGCAACT---TTAATTTTGCTGGG-TTT---TT TT---CCCCAGCTTTATTGAAAAATAATTGACATATATCA-C--TGTAAGTTTAAGGTATGTATACAGCTTGATGGTTTG ATTTAC--ATATACTG-TGAAATGATTACCACAATAGGTTTAGTTAAC--ATCCATCATCTCATA--------------- TTCATTTTGCT--------------------------TTTGTGTTGACAG-CTTTTGCTGGCACCATACACT >Manis_pentadactyla CATACATCCTAGGTTCCATTTGTTGTC----GTACAGTAAGGCCAT-GAGGGCA---TTACTTTTACTGTT-CTT---TT TTTCCCCCCCGTTTTATCAACAAATAATTGGCATACATCA-CTGTGTCAGTTTAAAG----TATACAGCATGATGGTTTG ATTTAC--ATATATTG-TGAAATGATTACCACAATAG-----GTTAAC--ATCAGTCATCTCAT---------------- -TAATTTTGCTCT--TCTT---ACGTCCGTCAGTGCTTTTATACTGACAG-TTTTTGCTGGCACA--ACACT >Sus_scrofa TTTACATTCTCAGTTCTGTTGGTAGTC----ATGCAGTAAAGCTGTGGTATACT---TTAATTTTGCTGTT-CTT---TT TTT--CCCCAGTTTTATTAAAAAATAATTGAC----ATCA-CTGTATAAGCTTAAGG----TGTACAGCATGATGGTTTG ATTTAT--ATATATTG-TGAAATGAT---CACAATAGATTTAGTTAAC--ATTTATAATCTCATA--------------- TTCATTTTACTGT--TCTT---AACTCCATCACTGCTTTTATGCTGACAGTTTTTTGCTGGCACAATACACA >Tursiops_truncatus TTTACATTCTAGATTCCATTGGTAGTC----ATGCATTAAGGTCATGGAGGACA---TTACTTTTGCTGGG-TTT---TT ATT----CCAGTTTTATTGAAAAATAATTGACATATATCA-CTGTATAAGTTTGAGA----TGTACAACATGATGGTTTG ATTTAC--ATATATTGATAAAATGATTACCACAATAGGTTTAGTTAAC--ATTTATTA-CTTGTA--------------- TTCATTTTGCTTT--TCTT---AAGCCCATCATTGCTTTTATGCTGACAG-TTTCTGGTGGCACAACACACT >Equus_caballus CTTATATCCGAGGTTCCATCGGTTGTC----ATACAGTAAGTCCACAGAAGACA---TTAATTTTGCTGTTGTTC---TT TTT--TTCCAGTTTTATTGAAAAATAATTGACATATATCA-CTATATAAGTTTGAGG----TGTGCAGCATAATGGTTTG ATTTAC--ATATATTG-TGAAATAATTGCCACAATAGGTTTAGTTAAC--AACCATCATCTCATA--------------- TTAATTTTGCTGC--TCCT---AAGTCCATCAGTGCTTCT--------------TTGCTGGCACAGCACAAA >Ceratotherium_simum TTTATATCTGAGGTTCTATCTGTTGTC----ATGTAGTAAGGCCACGGAAGACA---TTAATTTTGCTGTT-CTT---TT TTT--TCCCAATTTTATTGAAAAATAATTGACATACATCA-CTATATAAGTTTAAGG----TGTACAGCATAATGGTTTG ATTTAT--ATATATCG-TGAAATAATTACCACAGTAGGTTTAGTTAAC--ATACATCAGCTCATA--------------- TTAATTTTGCTGT--TCTT---AAGTCCATCAGTGATTTT--------------TTGCTGGCACAACACACT >Myotis_myotis TTCACA-CCCAGGTTGCATTGATTGTC----ATGCAGTAAGGCCCTAGAGGAAA-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- TGGATTTTGCTGTT-CTCT---GAGTCCATCAGTACTTTTATGCTGGTAG-TTTTTGCTAGCACACTACACT >Rousettus_aegyptiacus TTTACATCCTAGGTTCCATTGGTTGTC----ATGCAGTAAGGTCATGGAGGACA-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- TTAATTTTGCTGT--TCCT---AAGTCCATCAGTGC-TCTGTGTTGACAG-TTTTTGTTGGCACACCACATT >Condylura_cristata CTTACATCCTAG-TTCCATTGATTGTCGATTATACAATAAGA--ACAGAGTACA-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- TTAAC-TTGCTGT--CCCT---TAGTCTATTATTGTTTTCTTGCTGGCAG-TTTTTGCAGGC-----ACACT >Solenodon_paradoxus TTTACATCCTAGATTCCATCAGTTACC----ATGCACTGAAACCACAGAGGGCA-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- TTAACTTTGCTGT--CATT---AAGTCCATCAGTGCTTTTATGCAGACAG-CTTTTGCTAATACAGCAAACT >Homo_sapiens TTTACATTGCAAGTTCCATTGGTTGTC----ATGCAGTGAGGCCATGGAGAGCA-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- TTCGTTTTGCTGC--TCTT---AACTTCATCAGTGCTTTTATGCTGACAG-TTTTTGCTGGTGCAACACATT Dog323_LINE >L1_CARN7_3END ---------------------------------------------------------------------GGTGACAGATG GTAACTAGACTTATTGTG----GTGATCACTTCACAATGTATACAAATGTCGAATCACTATGTTGTACACCTGAAACTAA TATAACATTGTATGTCAATTATACTCAAATAAAAAAA------------------------------------------- ------------------------------------------------------------- >Canis_familiaris AATGAAATGTGGCTTAAATACCATACAATGGAATGTTATTCAGCGAT---AAA--AGGAATGATGG-----------GTG GTAACGAGATGGATGGTAAATTAAGATCATTTTACAATATATACAAATGTCTAATCATTATGTCATACACCTGGAACTAC TAT---GTCGTACATCAGTTATACCTCTATAGAAAATAATTACTGAAGGA----------AGGAAGAAATGAAGT---GC TGATATGC----AC---------TACAACATGAATAACCCTTAAAAACATCATGCGAGGTG >Felis_catus AACAAAATGTGGTTGATATACCATACAATGGAATATTATTCAGCAAT---AAA--AGGAATGATGG-----------ATG GTAACTAGACTTAGTGTG----GTGAACATTTTACAATCTACACAAACACTGAACTGTCATGTTATACATCTGAAACTAC T-----GTTATATGTCAATCAGATCTCTATAAACAATAATTTATGAAGGA----------AGGAAGGATTGAAGT---GC TGACATAC----AC---------TACAACATGAAGAAGCTTTAAAAACAT---GCTAAGTG >Manis_javanica AACAAAATGTAG----TAAACCATGCAATGGAATATTAT-CAACAAT---AAAAAAGGAATCATGA-----------ATG GTAACTGTATTTATTGT-------GATCATTTTGCTATATATATAAATATGGAATCATAAT---TTATACCTGAAGCCAT TATAAT-----------ATTATACCTCATTAAAAA-TAATA-------------------AATAAAAAATGAAGT---AT TGATACAT----GT---------T-CAATATGAATGATTCTTAAAACCATTATGCTACATG >Sus_scrofa AATACAATGTAG--CACATCCCACCTGACGGAATGTCTTGCAGCAAG---AGA-GAGGAGTGACGG-----------ATG GTGGTAAGACTCGCTCTG----GTGACCACTTCTGAACATACCCAAGTACTGCATCATTACGTTGTGTACCTGAAAGTA- -ACAATGTGACGGGGCAACTGGACCTCAATGAAAATGAATAA------------------ACACAGGCGTGAAGC---AC TGATACATAAATGC---------TCTACCACGAACGAGTCTTGAAAACATTTCGCTAAGAG >Bos_taurus AACATGATGTGG----TATCCCATACAACGGAATATTATTCAGCAAT---AAA-AAGGAACAATGG-----------ATG TTACCTAGACTTATTGTG----GTGATCACTTCTCAATATATACAAGTATAGAGTCATTATGCTGTAGACCTGAAACTAA CATAATGTTATATGCAAATTACACCTCAGGAAAAAAAAAAGATAAAGGA-----------ATAAA--------AT---AC TGATACGT----GC---------TATACTATGAATGAT-ATTAAAAACATTTTGCTAAATG >Equus_caballus AACAAAATGTGG----TATACCATACAATGGAATATTATTTAGCAAC---AAA-AAGGAATGATGG-----------ATG TTAACGAGACTTAATGTG----GTGATCATTTTGCAGTCCATATAAATATCAAATCATTATGTTGCACA-CTGAAACTG- ---------ATATGCCAGTTACAGCTCAATAAAAATGAAAGAAGGAAAGAAAGAAAC---AAAGAGAATTGAGGT---AC TGATACAT----GC---------TAAATCACGAATGATCCCTAAAAAAATTATATTAAGTG >Ceratotherium_simum GATAAATTGTGG----TATACCGTACAATGGAATATTATTCAGCATT---AAA-AAGAAATGATGG-----------ATA TTAACCAGACTTAATGTG----GTGATCATTTCGCAGTATATATAAATATTGAATCATTAT---TTACACCTGAAACTAA T-----ATAATATGTCAGTTATACCTCAATAAAGAAGAAAGAAGGAAACAA---------AGAAAGAATTGAAGT---AC TGATACAT----GC---------TACAACATGAATGATCCTTAAAAACATTATACTAAGTG >Myotis_myotis GACGAGGTGGGACCCAAGTGCC-----ATGGAATATTATTCAGCAAT--------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------GAAGAG-------GG---AC C------T----GC---------TATGACATGGAGGGTCCTTGAAAACATCAGGCTCAGTG >Rousettus_aegyptiacus GACACAGTGCGA----TGCACCACGCAGTGGAAAGCGGTCCATCGAT--------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------AGGGAGGAAGGACGG---GC AGATGCAC--GTGC---------CACGGCGTGGACGGTCCTTGAAAAGCTGATGGCGAGCG >Condylura_cristata AACAATATGTGG----TATACTATGCAATGGAATAGTACATGGCAAT--------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------AAAAGGAGATGATGT---AA TGATATATTGCAACAAAGTAATGCACTACATAGATGGTCCTTAAAATTATTATGTAAAGTA >Solenodon_paradoxus AGCACAATGTGG----GACAATGTACGATGGAATAGAATTCGGTCAT--------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------AAAAAGA-ATGATGT---AT TGGCATGT----GG---------TACAATGTGCATGGTCCTTGAAAATGTTATGCTATATG >Homo_sapiens AACAAAATGTAG----TATACCACACGAT-GAATATTATTAGGCATT--------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------AAAAAGGAATAAAGT---GC CGATACAA----GC---------TACAGCATG----ATCCTTGAAAACATTATGCTGAGTG Dog325_LINE >L1_CARN7_3END -------------------------------------------------------------------------------A TATATATACAATGGAATACTACTCAGCCATAAAAAAGAATGAAATCTTGCCATTTGCGACAACATGGATGGACCTTGAGG GCATTATGCTAAGTGAAAT-AAGTCAG-CAGAGAAAGACAAATACCATATGATTTCACTTATATGTGGAATCTAAAAAA- CAAAACAAATGAACAAAAAAAAACAAACCAAACAGACTCATAGATACAGAGAACAGATTGGTGGTTGCCAGAGGGGAGGG GGGTTGGGGATGGGTGAAATGGGTGAAGGGGGTCAAGAGGTACAAACTTCCAGTTATAAAATAAATAAGTCA--TGGGGA TGTAATGTACAGCATGGNGAATATAGT-CAATAATATTGTANTAACNTTGTATGGTGACAGATGGTAACTAGACTTATTG T---GGTGATCACTTCACAATGTATACAAATGTCGAATCACTATGTTGTACACCTGAAACTAATATAACATTGTATGTCA ATTATACTCAAAT------AAAAAAA------------------------------------------------------ ------------------------ >Canis_familiaris CTTGACAAATACAATTTA-GGT-AAAAAT------GGTCCTATATGTCAATACTTCTA---AAACTTTAATGTGCA---- ----------ATGGAATATTATTCAGCTATGAGAAAGGAAGATAGTCTTTGATTTGTAACAACGTGAAAGGATCTTGAGC ACATTATGCTGAGTGAGAT-AAGTCAGAGAAAGAAAGACAAGGAC--TATCATCCCATTTACATGTGGAATTTTAAAAAG TTAAACCTGTAAAAAAAAAAAAAAAAAAAAAAAAG------------------CAAAATATTGGTTACCAGGGAATGGAA TGG-----GAAGGATTAAA---ATGCTGATGTTTAAG-AGAACAAACTTTTAACAG-GTAGTAAATAAACCA--TAGAGA TCTAATGCACAGTATCATGAATACAGA-TAATAGTGTTACACCATAATTATGTAATG-----CCATAAATATTGCTACAC T---GGCAATCCTGTTACAATATATAAATGTGTCAA-----CACGTTGTATACCTTAAACTCACACAATGTTACATATCC AATTCATCCATTG------AAAAAAA---AAACCCTTAAATGTGCA---TATGAATCTCCTGAGAATCATAC-------- -GATTCTCAT--TGGA-TGGAGCC >Felis_catus ATTGATGGATACAATTTA-GGT-AAAAATAGTAAAAGTCCTATAGGCCAATACTTCTA---AAACTTCAATGAGCA---- ----------ATGGAATATTATTCAGTCATGAGAAAGGAAGATATTCTTTCATTTATGACAACATGAAAGGACCCTGGGC ACATTATGCTAAGTGAGAT-AAGGCAG------------------------ACCTCACTT--ATGTGGAATTTTAAAAAG TTAAAACTATAAAAAAAAAAAGAA-----------------------------TAAAATGATGGTTACTAGGGGTTTGGG CGG-----GAAGGATTAAA---ATGCTGGTGTTTAAG-GGTACAAACTTATAACAA-GTAGTAAATAAACCA--TAGAGA TCTAATGCACAGTATCATGAATACAGATTGATAATGTTGTAGCATAATTATGTAATG-----TGATAAATATTGCTACAT T---GGCAATCATATTACAATATGTAATATTAT----------------------------------ATGTTATATGTAA TATATATATATGTGTCCCCAAAAAAG---GGACANNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNN >Manis_pentadactyla CTTGGCAAACACCATTTGCAAT-AAAAATAG---AAGTCCTACAGGCCAGTACTTCTC---AAACTTTAATACATA---- ----------GTGGAATACTATTCAGCCATGAGAAAGGAAGATATCCTTCCATTTGTGACAACATGGTTGGACCCTGAGC GTGTAATACTAATAGAGGT-TAGTCGGACAGAGAAAAATGAGTAGCATATGATATCACTTACATGTGTAATTTTAAAAAG TTAAACCTATAAAAAACAGTA---------------------------------AAAATAGTAGTTACCAGGGGATGGGA TAG--GGGGACAGATGAGA---GTGATGGTGTTTAAG-GGTATAAATTTGTCATGA-ATAGTAAATAAGTAAATAAGAGA TCTAATGCACAGTGTAATAAATATAGA-CAATAATATTGTAGTATAATTAAGTAATG-----TGATAAATACCACTACAT T---GGCAGTCATATTGCAACATATAAAGGTAT-----------------AACCTTTCATTTACACAACGTTACATTTCA AATTTATTCAGTT------AAAAA-----AAGCTCT--CATGTGCA---CATGAATCTCCTGGGAATCATGTTAAAATAC AGATTCTGATTCTAGG-TAAAGCC >Equus_caballus CCTGAGACATACCATTTTCAGT-AAAAATAG---AAGTCCTATAGGCCAATACTTCTC---AAACTTTAATGTGCA---- ----------ATGGAATATTATTCAGCCATGAGAAAGGAAGATATCCTCGAATTTGTGATGGCATGGATGGACCTTGAGC TCATCACACTAAGAGAGAT-AAGTCAGACAAAGGAAGACAAATACTGTATGATCTCACTTATATGTGGAATCTGAAAAGG TTAAACGTGTGAAAAACAGAGAG------------------------------TAAAGTGGTGGTTACCAGGGCATGAGG GGG----TGGGGAATAAGA---GTGCTGGTTTTTAAA-GGTACAAACTTCTAACAA-GAAGTAAATAAACCG--TAGAAA TCTAATTCAGAATATAATGAATGTAGA-CAATAATATTGTACTATAATTATGTAATG-----TGATAAATATTACTACAC T---GGCAATCATATTACAATATATAAATGTATCAAAGTTACACCTTGTACACCTTAAATTTATACAATGTTACACGTCA CATTTATTCAATT------AAAAAA----TAACTTT--AATGTGCA---TATGAATCTCCTAGGAATCATGGTAAAATAC AGATTCTGATTCTGGG-TGGAGCC >Ceratotherium_simum CCTGAC--ATACCATTTGCAGT-AAAAATAGTAGAAGTCCTATATGCCAATACTTCTC---AAACTTTAATGTGTA---- ----------ATGGAATATTATTCAGCCGTGAGAAAGGAAGATATGTTCCCATTTGTGACAACGTGGATGGACCCTGAGC AC-TTATGCTAAGTGAGAT-AAGGCAGACAGAGAAAGACAAGTACTATATGATATCACTTATATGTGGAACCTAAAAAAC TTAAACCCGTAAAAAACAGAGAG------------------------------TAAAGCAGTGGTTATCAGGGGATGGGG GGG--------CAATAAAA---GTGATGGTGTTTAAA-GGTACAAACTTGTAACAA-GAAGTAAATGAGCCA--TAGAAA TCTAATGCACAGTATAATGAATATACA-CAATAATATTGTACTATAATTATGTAATG-----TGATAAATATTGCTACAT T---GGCAATCATATTACAGTATATAAATGTATCAAAGTAACGCCTTGTACACCTTAAATTTACACAATGTTACACATGA AATTTACTCAATT------AAAAA-----AAACTGT--AACGTGCA---TATGAATCTCCTGGGAATCACGTTAAAATTC AGATTCTGATTCTGGG-TGGAGCC >Myotis_myotis CCTGACAAATACTACTTACAGTAAAAAATACTAGAAGTCATATGGGCCAATACTTATC---AAACTTTAATGTGCA---- ----------ATGGGATACTATTCAGGCATGAGAAAGGAAGAAATCCTCCCATTTGTTACACCATGAACGGACCTTAAGC AC--------AAGTGAGAT-AAGTCAG----ATAAAGACAAGTACTG---AACATCATTTATATGTGGAATCTAAAAAAG TTAAATCTGTAAAAAATAGAGAG-------------------------------TAAATGGCAGCTACCAGGGGATGGGA GAG--------GGGTTAAA---GTGATGGTGTTTAAG-GGTAAAAACATGTAACAA-GTAGTAAATAAGTCA----GAGA CTTAATGCACACTGTAATGAATATAGA-CAATAATATTGTACTATAATCAGGCAATG-----CAATAAGTATCACTACAT GTAATGCAAGCATATTACAATATATACATGTATCAAAGTAATATGTTATGTA-CTTAAACTTGCACAATATTTCATGTCA AATTTATTTAATT------AAAAAAG---CAACTTT--AATATGCA---TATGAATTTCCTGAGAATTATGTTAAAATAC AGTTTCTGATTCTGGGTTGGAGCC >Rousettus_aegyptiacus CCTGACAAATATCATTTACAGT-AAAAATAGC--AGGTCTTACAGGCCAATATTTCTC---AAACTGTAATGTGCA---- ----------GTAGAATATTATTCAGCCATGAGAAAGGAAGATATCTTCACATTTGTGACAACATGGATGGACCTTGAGC AAAT-ATACTAAGCAAGATCAAGTCAGATA-AGAAAGACAAGTATTGTATAATATCACTTGTAAGTGGAATCTAAAATAG TTAAATCTGTGAAAAACAG----------------------------------TAAAATGATAGTTATCAGGAAATAGGA GAG-----AAGAGGTAAAG--AGTGATGGTGTTTAAG---TACAGACTTGTAATGA-GTAGTAAATAAGCCA--TAGAGA TCTAACGCATGGCCTAATGAA-ATAGA-CAATAATATTGTACTATGATCATGTGATG-----CAATAAATATC---ACAT C---GGCAATCATATTACAATATGTGA--------------CACACTGTATAACGTAAACTTATGCAATGTTACATGCCA AATGTATTGAATT------TAAAA-----AAACTTT--AATGTGTA---CATGAA-ATCGTGAGAATTCTTTTAAATTAG AAATTCTGATTCTGGATTGGAGCC >Sus_scrofa CCTAACAAATACCATTTGTACT-AAAAATAGCAAAAGCCGTATATGCCAGTACTTCTC---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------AAACTTT--AATGTGCA---TATGAACCTCCTAGGA------------TAG AGATTCCGATTTTGGG-TGGAGCC >Bos_taurus CTTGACAAATACCATTTGTAGT-AAAAATAGTAAAAGTCATATATGCCAGTACTTCCC---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------AAACTTT--ACTGAGCA---TTTGAATCTCCTGGAAATCATATTAAAGTAT AGATTCTGATTTTGGG-TGGATCC >Condylura_cristata TCTGACAAATACTGTCTGCAGT-AAAAAGAGTAAAAGTCTGATGTGCCAATACTTCTC---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------CAAATTT---ATGTGCA---TATGAATCTGCTGGAAATCACAGTAAGTCAC AGATTCTGATTCTGGG-TGGAGCC >Sorex_araneus CTTGACGAAT-CCTTTTATTGT-AAAAACAATAAAAG-CTAATAGGCCAATACTTTCC---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------CAATATT--ATTGTGCA---TTTGTATCTCCTGGGAATCATGGCAAACA-- ----------TCTGGG--TGAGCC >Homo_sapiens CCTGATAAATACCATTTGCAGT-AAAAGTAATAAAAGTCCTATAGGCCACTGCTTCTC---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------AAACTTT--AATGTGCT---TATGAATCTTCTGGAGATCATGTTAAAATGC AGATTCTGATTCTGGG-TGGGGCC Dog326_LINE >L1MC3_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------TTTTTNAAAATAAACTTTTTATTTTAGAATAGTTTTAGATTTACAGAAAAATTGCGAAGATAGTACAGAGAG TTCCCATATACCCCACACCCAGTTTCCCCTA-TTATTAACATCTTACATTAGTATGGTACATTTGTCACAATTAATGAAC CAATATTGATACATTATTATTAACTAAAGTCCATACTTTATTCAGATTTCCTTAGTTTTTACCTAATGTCCTTTTTCTGT TCCAGGATCCCATCCAGGATACCACATTACATTTAGTCGTCATGTCTCCTT-AGGCTCCTCTTGGCTGTGACAGTTTCTC AGACTTTCCTTGTT-TTTGATGACCTTGACAGTTTTGAGGAGTACTGGTCAGGTATTTTGTAGAATGTCCCTCAATTGGG ATTTGTCTGATG-------TTTTTCTCATGATTAGACTGGGGTTATGGGTTTTNGGGAGG-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------- >Canis_familiaris GACCT---AGGCAATGGTTAGATTAAAAC--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------AGTGATTT---TCAAACAGT--TTTTGAAAA----ATCAAT------TATATGG TTTGT----TCTGGAAAAAATAAGTTTTACTTTAGAATAGTTTTAGATATATTGAAAAATTATGAAGATAGTGT--AGAG TACCTATATACTCCATAACTAGTTTTCCCTA-TTATTAACATCTTATAATAGCAGGATACATTTGTC--AGTTAATGAAC CAATAT-----CATTATCATTAACCCAAGTCCATAATATATTCAGATTCCCTTTGTTTCTCTCTAATGTCCTTTTTCTGT CCTAGGACCCCATCCAGGACACCTCATTACATTTAATCTCCTTGTCTTCTT-AAGCTCCTCTTGACTGTGACAGTTTCTC AGGTTTTCCTTGTTCTTTAATCACCTTGACAATTTTGAGGAATGTTGGTCAGGTATATTATAGAATGTTTCTTAGTTGGG ATTTGTCTGTT--------TTTTTTCCAAATCTATTGAGCTATAATAG---------------GAACAT----AAATATC TTACTC---AATCCT--ATGTACAAAAATGAATAAAAATGGAG------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------CTGTTCTAAGTTCTAAATCAGGA >Felis_catus GAACT---AAGCAATGGTTAGATTAAAGCAGTGATTTTCAGGGGCACCTGGGTGGCTCAGTCGGTTACGGGTCTGACTCT TGATTTTGGCTCAGGTCATGATCTCATAGCTCATGAGTTCCAGCCCACTGACAGCACAGAGCCTGCTTGGGGTTCTCCCT CTCCCTCTTTCTCTTTAC-------------------------------------------------------------- ---------------------------------------------------------------------CCCTCCCCTAC CATATAAATAAGTAAACATTTAAAAAAGTGATTT---TCAAGGAGT--TTTTAAAAAA---ATCAAG------TATATAT TTCTT----TTCTGAAAAAATAAGCTTCATTTTAAAATAGTTTTAGGTTTACAGAAAAATTATGAAGATAGTAGAGAGAG ------AATACCCCACAACTACTTCTCCCTATTAATAA------TATGTTAGCAGGATA---TTGCCAAAATTAATGAAC CGATATCATT--ATTATTATTAACCAAAGTCCATAACGTGTT-----------TGTTTTTCTCTAATGTCCTTTTTCTGT C------------CCGGGACATCTCATTACATTTAATCTCCATGTCTT----AGGCAACTCTTGACTGTGACAGTTTCTC AGG-TTTCCTTGTT-TTTAATAACCTTGATAATTTTGAGGAATATTGGTCATGTATTTTGTAGAATGTTTCTCAATTGGG ATTTGTCTGGTTT------TTTCCCCCAGCTTTATTGAGCTCTAATTG---------------AAAAAT----AAATATA CTTCTC---AATCTT--ATGTATAAAAGCGAATAAAAGTGGAGCTGTTCGGGGGCGCCTGGGTGGCTCAGTCGGTTAAGG GTCCAATTTCGGCTCAGGTCATGATCTCACGGTTCGTGAGTTCAAGCCCTGTGTCAGGCTCTGTGCTGGCAGCTCGGAGC CTGGAGGCTGCTTCAGATTCTGTGCTTCCCTCTTTCTCTCTGCCCCTCCCCTACTTGTGCTCTGCCTCTCTGTCTCTCAA AAATAAATAAATGTTTAAAAAAATTTAAATAAAAGGAACTGTTCTGATTTCTAAATTAAGA >Manis_pentadactyla GGCCT---ACATACTGATTAGATTAAAAT--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------AGAAGTTT---TCAAATGTT--TTTTAAAAA----ATCAAT------CATATAT TCCTT----TAAAAAAAACACAATGTTTATTTTAGAATAGTTTTAGATTTACTGAAAACTTATGAAGATAGTGC--AGAG TTCCCATATAC------------------------------TCTTACATCAGTAGGGTACATGTGTCATAATTAAGGAAC TAATAT-----CATTATCATTAACTAAAGCCCATACTGCATTCAGATTTCCTTTGTTTTTCTCTAATGCCCTTTTTCTGT CCCAAGATCCCATCCAAGAT----CATCATATTTAGTCATCGTGTCTCCCT-GGGCTCCTCTTGACTGTGACAGTTTCCC AGACTTTCCTTGTT-TTTGATGACCTGGACACCTTTGAGAAGTACTGGTTAGGTATTTTGTAGAATGTTCCCCAATTGGG ATTTGTCTGAA--------ATTTTTTCAGTTTTATTGAGATATAGCTA---------------ACAAAT----AAATATA TTTCTT---AATCTT--CTATATAAAAATGAATAAAAGTGAAA------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------CTGTTCTGATTTCTAAATTAGGG >Equus_caballus AACCCAGGACACAATGGTTAGATTCAAAC--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------GGTGATTT---TCAAACAGT--TTTTTAAAA----AACAAAGATTTTTACATAT TTTTC----TCT----AAAATAAGCTTTATTTTAGAATAGATTTAGATTCACAGAAAAATTATGAAG---------AGAG TTCCCATATGTCCCATGACCACTTTCCCCTG-TTATTAACATCTGACATTGGTAGGGCACATTTGTCACAATTAACGAAT CAATCTTGATACAGTCTCATTAACCAAAGTCCATACTTTATTCAGATTTCCTTTGTTCTTCTCTGCTGTCCTTTCTCTGC TCCAGGGTCTCATCCAGGACACCACATGGCATTTAGCCGTCACGTCTCCTC-GGGCTCCTCTTGGCTGTGACAGTTCCTC AGACTCTCCTTGCT-T-TGATGACCTGGACAGTTTGGAGGAGGACTGGT-AGGTATTTTGCAGAATGTTCCTCAATTGGG ATTTGTCTGATGTTTTCC-TTTTTTCCAGCTTTATTAAGGTATAATAG---------------ACAAAT----AAATATA TTTCTT---AATCTT--ATGTATAAAAATGAATAAAAGTGGGG------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------TTGCTCTGATTTCTAAATTAGGG >Ceratotherium_simum AACCTGCTACGCAATGGTTACACTAAAAC--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------GGTGATTT---TTAAACAGT--TTTTAAAAA----ATCAAT------CATATAT TTCTT----TTTTAAAAAAATAAAGTTTATTTTGGAATAGTTGTAGATTCATAGAAAAATTATGAAGCTAGTGCAGAGAG TTCCCATATGCCCCACAACCACTTCCTCCCGATTATTAACATCTTACATCAGTAGGGTACGTTTGTCACAATTAATGAGC CAATATTGATACAGTCTCATTAACCGAAGTCCATACTTTATTCAGATTTCCTTTGTTTTTCTCTAATATCCTTTTTCTGC TCCGGGATCCCGTCCAGGACAACACACTGCATTTAGTGCTCATGTCTCCTT-AGACTGCTCTTGGCTGTGACAGTTTCTC AGCCTTTCCTTGTT-TTTGATGACCTTGACAGTTTTGAGGAGTACTGGTGAGATATTTTATAGACTGTTCCTCAATTGGG ATTTGTCTGATGTTTTCCTTTTTTTTCAGCTTTATTGAGGTATAATAG---------------A-AAAT----AAATATA TTTCTT---AATCTT--ATGTATTAAAATGAATAAAAGTGGAG------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------TTGTTCTGGTTTCTAAATTAGGG >Myotis_myotis AACCT---AAACAATGGTTAGATTAAAAT--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------AGTGATTT--TTCAAATAGT--TTTAAAAAA----ATCAAT------CATATAT TTCTT----TTTT---AAAATAAACTTTATTTTAAGATATTTTCAGAATTACAGAAAAATTATGAAGAAAATGT--AGAA TTTCCATATGCAACACAACCATTTTCCCCA--TTATGAACATTTTGCATTAGTAGAATATGTTTGTCATAATTAATGAAT CAATAT-----CATGATCATTAACCAAAGTCCATATATTATTCAGATTTCCTTTGTCTTTCTCTAATGTCCTTTTTCTGT TCCTGGATCTTATCCAGGACACCACATTACGCTTAGTTATCATATCCCTT--AGGCCCCTCTTAATGGGGACAGTTTCTC AGACTTTCCTTGTT-TTTGATGACTTTAACAGTTCTGAAGAGCACTGGTCAGGAATTTTGTAGAATGTTCCTCACTT-GG GTTTGTCTGATT-------TTTTTTTCAATTTTATTGTGGTATAATTG---------------ACAAAT----AGATAAA TTTCTT---AATATGTATTGTGTAAAAATGAATAAAATTGGAG------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------CTGTTCTAATTTTTAATTAGGGA >Rousettus_aegyptiacus TATTT---AAGCAGTGGTTAGATTAAATC--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------AGTGATTTTCATCAAATAGTAATTTTAAAAA----ATCAAT------CATAGGT TTCTT----TTTA--AAAATTAAAATTTATTTTGGAATGGCTTAAGATTCACAGAAAAATTATGAAGATAGTAGAGAGAG TTCTCATATACAGCACAACTTTCTTCTA----TTTTTAATATTTTGCATTGGTAGGGTATGTTTGTCACAATTAATGAAC CGATAT-----CATTATCATT---------------------CAGATTTCCTTAATTTTTCTTTAATGTCCTTTATCGGT TCCAGGATCCCATCTAGGATACCATAATGTATTTAGTCATTGTATCTCCTTAAGGCTCTTCCTGACTGTG-CAGTTTCTC AGACATTTCCCGATTTTTGATAACCTTGACA-TTTTGAGGAGGAGTGGTCAAGTAGTTTGTAGAATGTTGCTCAGTT-GG ATATGTTTGA---------TTTTTTTCAGCTTTATTGAGGTATAATTG---------------ACAAAT----AAATATA TTTTTA---AATCTT--TTTTATAAAAAGAAAT---ATTAGAG------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------CTGTTCTGATTTCTAAATTAGGG >Sus_scrofa GACCT---ACACAATGGTTGCATTCAAAC--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------AGTGATTT---TCAAACAGT--TTCTTAAAA----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------ACAAAT------ATATA TTTCTA---ATCCTT--AT-TATACAAATGGAT--AAGTGGAA------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------CTGTTCTGGTTTCTAAATTAAGG >Bos_taurus GACCC---AAACTATGGTTAAATTAAAAT--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------AGGGAGTT---TCACATAGC--TTTTCAAAA----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------ACCAAATCCATCATATA TTTCTT---AATCTC--ATGTATACACATGAAT--AAGTGGAG------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------CTGTTCTAATTTCTAAATTAAGG >Condylura_cristata GATTT---AAGCCATGGTAAGTTTGAAAT--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------AGTGATGT---TCAAAATTTTTTTTTAAATA----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------TTTTAA-----AAT--- ----TT---TATCT---ATGT-------------------GAG------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------TTATTCTGAAATCT---TTAGGG >Scalopus_aquaticus GACGT---AAGCCATGGTTAGATGAAAAT--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------AGGGATTT---TCAAATTTT--TTTTAAAAA----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------CATTTT---------TA CATTTT---AA-CT---ATGTA----AGTGAAGTAAAGGGGAG------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------CTGTTCTGATTTTT---TTAGGA >Homo_sapiens GACCT---AAGCTATGGTTAAATTAAAACAATGATTTTTGGCCTGGCGAGGTGGTTCATGCCTGTAATTCTAGCAGTTTG GGAGACTGAGGTGGGTGGATCACCTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTA AAAATGCAAACATTAGCCAGGCATGGTGGCAGGTGCCTGTAATGCCAGCTACTCAGGAGGCTGAGGCAAGAGAATCGCTT GAACCCAGGAGGCAGAGATTGCAGTGAGCTGAGATCAAACCACTTCACTCCAGCCTGGGCGAAAGAGCAAAACTCCTTCT CAAATAAAATAAAATAAAAAAAAAACAATGATTT---TTAAGCAGC--TTTTT-AAG----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------ATGAAT-----TATATA CTTTTA---AATCTT--TTGTATAAAAATGGATAAAAGTGGAG------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------CCGTTCTGATTTCTAAATTAGGG Dog329_LINE >L1MA9_3END ------------------------------------------------------------------------TTTTTCCA GCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGAT-ATACGTATACA TTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTACCATTTTTTTGTGT--------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------ >Canis_familiaris ATTTCAAATGTTGTCAGGAATTTTTTAAAATTTTGTTTTTGTACCATATCGTTTT---TTTCCCCAGTG----------- ---TTATTGAGATATAATTGTCATACA-GCATTGTA------GAAGTTGTACAGCTTAATGACTTGAT-TTAC--TTGTG TCATGACATGATTACCAAAAT-AGTTTCCCTAGC--ATCCATCACCTTATGTAATTGG----------------TTTTAG TC-TTT---AAAAAATCTGAAAATG------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------AACT-TAGATTGGCA--------GTAATTCTTTCCTTTGGTCT >Felis_catus GTTTCAAATATTGTCAGTAATTTTTTGAAATTCTGTTTTTGTATCATGTCTA-TT---TTTC--TAGTG----------- ---TTAGTGAGGTATAACTGATGTAGA-GCATTGTA------TAAGTTGTACAGCATAATGATTTGAC-TTAC--ATGTA TCATGACATGATTACCAAAAT-AGTTACACTAAC------ATCATCTTAGGTCATCATTTCTA-----------ATTTAT TG-TTT---AAAAATTCTGAAGATGTGGGGCGCCTGGATGGCTTCAGTTAGTTGAGCGTCCGACTTCAGCTCAGGTCATG ATCTCGCGGTTTGTGAGTTTGAGCCCTGCATCCGGTTCGCTGCTGACAGCTCAGAGCCTGGAGCCTGCTTCCAATTCTGT GTCTCCTTCTCTCTCTGCCCTCTCTTGCTCGCACTCTGGCTCGCTCGCTCTCTCTCAAAAATAAATAAACATTAAAAAAA ATCTGAAGATGATCT-TGGATTGGTA--------GTAATTCTTTCCATTGGTCC >Manis_pentadactyla ATATCAAATATTGTCAGTAACTTTTGGAAATCATGTTTTTGTATATCAGTTT------TTTCCCCAGTT----------- ---TTGTTGAGATATAATTGACATACG-GCATTGTA------TAAGTTGTACAGCATAACGATTTGGCTTTAC--ATATA TTGTAAAGTGATCACCACAGT-AGTTTAATTTTAATATCCACTATATTA----GTCCTATCTG-----------TTTTAT TT-TCT---AAACAAACAGAAGATA------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------AACA-TGGCTGTGTA--------GTAATTCTCCCCTTAAGTCC >Equus_caballus ATTTCCAATATTGTCAGTAATTTTTAAAAATTCTATTTTTGAACTGTATCTAT-----TTTTTGCCGTT----------- ---TTATT--GATGTAATTGACATACA-GCATTGCA------TCAGTTGTATAGCATAATGATTTGAC-TTTC--ATATA TCGTGAAATGAT-ACCACAATAAGTTTAAC------ATCTATCATCTTATATAGTCATGTCTA-----------TTTTTT TC-TTT---AAAAAATTTGAAGATG------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------GATAGGTA--------GAAAGTCTTTCCTTCAATCC >Ceratotherium_simum ATTTCAAATATTGTCAGTAATTTTTAAAAATTCTTTTTTTGGATCATATCTAT-----TTTTTCCAGTT----------- ---TTACTGAGATATAATTGACATACA-GCATTGTA------TCAGTTGTACAGCAT--TGATTTGAC-TTAC--ATACG TTGTGATGTGATTACCATAAT--GTTTAACT------TCCATCATCTTATATAGTCATATCTA-----------TTTTAT TC-TTT---AAAAAATCTAAAGATG------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------AAGA-TGGATAGGTATAAGATACATGCATCTTTCCTTCAATCC >Myotis_myotis ATTTCAAATATTGTCAATTTCTTT---AAATTCTA-TGTTGTGTCAC--CTA------CTTTTCTAGTT----------- ---TTATTGAGATATAATTGATATACA-GCATTGTA------TAAGTTGTACACCATAACAACTTGC--GTAC--ATAGA TGATAAAGTGATTATCATAATAAGTTTTATTAGT--ATCCATCATCTAAAATGGTTGCATCTA-----------TTTACT CCTTTA---AAAAAATATGAAGGAA------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------AACA-TAGATA-ATA--------GCAGTTCTTTCCTTCAGTCC >Rousettus_aegyptiacus ATTTCAAATATTATCAGTAATTTTAAAAATTC----TATTGTATATTTTCTA------TTTTTCCAGTT----------- ---TTATTGAGGT-TAATCGATATACA-GCATTGTA------TAAGTTGTACAGCATAATGATTCAAC-TCAC--ATA-A TCA--AAGTAATTACCATAATAAGTTTAAATAAC-----AATCATTTTATATGGTCATATCTA-----------TTTTAT TCATTC---ACAATATCTGAAGATG------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------AACA-TGGAGAGGTA--------ACAGTTCTTTC----AGTCT >Sus_scrofa ATTTGAAATGTTGCCAGTAGTCTTTTAAAATTCTGTTTTTGTATCATACCTC---------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------TTTTAT TCTTTT---AAAAAATCTGAAGATA------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------AAAA-TTGATAGGTA--------GTCAGTCTT--------GCT >Bos_taurus ATTTTAAATATTGCCAGTAATTTTTTTTTAATTCCGTTTTGTACCA----TC---------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------CTTTAT TTTTTT---TAAT--TCAGAAGATG------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------AACA-TGGATAGGTA--------GTCATTCTTTGCTTCATTCC >Condylura_cristata ATTTCAAATATTGCCAGTAATTTTTAAAAATTCTGTTTCTGTATCA----TA---------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------TTTCAT TC-TTT---GAATTATCTGAAGATG------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------AATA-TAGTTAGGCA--------GTAATTCTTTCTTCTGCTCT >Sorex_araneus ATATCAGATACCATCAGTGACTTCTAGTGATTTTGTTTT-AT--------TT---------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------TTTAA AC--------AAAAATCTGAAAATC------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------AACTTTCAGTGAGTG-----------AGTCATCCCTTTGGTCC >Homo_sapiens ATTTGTAATACTGTTAGTAAATTCTTAAAATTCTATTTTTG---CATTTCTA---------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------TTTTAT TCATTC---ACAG-ATCTGAAGATG------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------AACA-CAAATAGGTA--------GTAATTCTTTCCTTGAGTCC Dog335_LINE >L1MA9_3END -------------------------------------------------------------------------------- ----------------TTAATATCCAA----------------------------------------------------- -------------------------------------------------------------------------------- --------------------AATATATAAGGAACTCAAACAACTCAATAGCAAAAAAACAAATAACCCG-ATTAAAAAAT GGGCAAAGGACCTGAATAGACATTTCTC--------AAAAGAAGACATACAAATGGCCAACAGGTATATGAAAAGATGCT CAACATCACTAATCATCAGGGAAATGCAAATCAA-AACCACAATGAGAT-ATCACCTCA-CACCTGTTAGAATG------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------GCTATTATCAAAAAGACAGAAGATAACAAGTGTTGGCGAGGATGTGGAGAAAAGGGAACCCTT GTACACTGTTGGTGGGAATGTAAA------------------TTGGTACAGCCATTATGGAAAACAGTATGGAGGTTCCT CAAAAAATTAAAAATAGAACTACC---ATATGATCCAGCAATCCCACTTCT-GGGTATATATCCAAAGGAAATGAAATCA GTATCTCGAAGAGATATCTGCACTCCCATG-TT----CATTGCAGCATTATTCACAATAGCCAAGATATGGAANCAACCT AAGTGTCCATCGACGGATGAAT-GGATAAAGAAAATGTG--------------GTATATATACACAATGGA--------- -------------------------------------------------------------------------------- --------------------------ATATTATTCAGCCTTAAAAAAGAAGGAAATCCTGCCATTTGTGACAACATGGAT GAACCTGGAGGACATT--ATGCTAAGTGAAATAAGCCAGGCACAGAAAGACAAATACTG-CATGATCTCACTTATATGTG GAATCTAAAAAA------------------GTCAAACTCATAG-AAGCAGAGAGTAGAATGGTGGTTGCCAGGGGCT--G GGGGGTGGGGG------AAATGGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGA GATCTAATGTACAGCATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAG TGTTCTCACCACACACAAAAAAA-------------------TGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTT GATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATAT-ATACAATTTTTATTT GTCAATTATACCTCAATAAAGCTGGAAAAA-------------------------------------------------- ----------------------------------------------- >Canis_familiaris GAATCATCAT----TGACTCTAACAGCTAAAT-CACTTAATACTAAACTCTCATT---------AAGTCTACTTAACAAA A-----------AATAAAATAGTCCAA----------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------TTTAGAAAAT GAGCAAAGGACCTGAATAGACATTTTTC--------AAAAGAAGATATATGAGTGGCTAACAGGTACATGAAAAAGTGCT TGAAATCACTAATCATTAGAAAAATAAAAATCTA-AACTACAATGTCAT-ACCAACTCA-TACCTGTTAGAATG------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------AC----ATCAAAATTACAAAAGATAACATATGT------------------------------ ----ACTGCTGATAAGATTGTAAA------------------CTGGTACAGTCACT-TGTAAAATAGTATGGATTTTCCT T-AAAAATTAAAAATAGAACTATC---ATATC--------ATTCTACTTCT-TGGAATAAACGCAAAAGAAACAATAACA TTACATTGAATAGATCTCCCCACCCCCATG-TT----CATAACAGCATTATTCACAATAGCCAGGACAT-GAAACAACCT AAATGTACACTGATGGGTGAATAAAAAAAAGGAGCTGTA--------------GTATATATACACTATGGGATA------ ------------------AA------------------------------------------------------------ -----------------------------------------AAAAAACAAGGAAATCCTACCTTTTGTGACAACAT-GAT GGAAACTGAGGGACTTCAATGCTAAGTGA-ATAATTCAGAT----AAAGACAAATGCTG-CATGATTTCATTTATATATG GAATTTAAAAAATAA----ATAAATAAGCAAACAAACTCATAGAAAAAAGATATCAGAGTTGTGGTTACCAGAGGTG--G AGGGTTGGGGGCATGGAGAATTTGAAGAAGGTAGTCAAAAGGTACAAACATCTAGTTGT--AAAATG---AAGTACTAGA GATGTAATGTACAACATGATGGCTCTAGTTAACACTGCTGTATGGCATACTTGAAAATTATTAAGAAAGCAAATGCTAGG AGTTCTCATCACAAGAAAAAA------CTTTTTTTCTTTTTTTTGTATTTGTATGAGATAATGG--ATGTTA-CTAAAGT GACTGTGTTAATCATTTCATAATATAT--GTAAGTCAGATCATTAAGCTATACACCTCAAACCT-ATACAG-TACCAAAT GTCAATTATATCTCAAGGAAACTGGAA--ACTTTTTAAAA---AAGATAAATTACAGTTA-A--ACAATT-ACA---TTG GTAGATATTGGCTATTGGGCTTTCTAGCCTGAAAGGAACTGTCTTTA >Felis_catus GAATTATCAT----TGGCTCCAACAGCTAAGT-CACTTAGTTCTAAACTCTCATT---ACAATAAAGTACGTCTAGCAAA A---AAAAATAAAATAAAATAATACAATTTTAAAAGTGGACAAAGAGGGGTGCCTGGGTGGCTTAGTCAGTTAAGCATTG GACTCTTGATTTCGGCTCAGGTCAGGATCTCACAGTTTTGGGGATTGAGCCCCACAGTGCGGAGCCTGCTTGGGATTCTC TCTCTCCTCTCTTTCTGCCCCTCTCTGTGCACACATTCTCCCTTTCTCTCAAAAAAAAAAAAATAAACATTTTAAAAAAT GGACAAAGGACCTGAATAGACATTTTTC--------AAAAGAAGACAAAAGAATGGCCACCAGGCACATGGAAAAGTGCT CCATGTCAGTAATCATTAGGGAAATGCAAGTGAA-AATCACAGTAAGAC-ATCAACTCA-CACCTGTTACAATG------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------GCTAGCATCAAAAATACAAAAGAT---AAATGCTGGTAAGGATGTGGATAAAA--GAATCCTT GTCTACTGTTGATGGGATTATAAA------------------CTGGTACAGCCACTTTCTAAAACAGTATGAAGGTTCCT CAAAAAATTAAAAATAGGACTATC---ATATCATCCAACAATTCTACTTCT-GGGAATATATTCAAAAGAAATAAAATTA CTATGTTGAAGAGATATCTGTACCCTGACA-TTCATCCATAGCAGCATTATTTACAAGAGCCAAGACATGGAAACAACCT AAGTGTCCACTGATGGATGAAT-TGATAAAGAAGTTGAA--------------GAACACATACACGATGGAAT------- -------------------------------------------------------------------------------- -----------------------------------------AAAAACCAAGGAAATGCTGCCTTTTGTGACAACAT-GAT GGAAATTGAGGGAGTTCAATGCTAAGTGAAATAAGTTAGAC----AAAGACATATACTGTTAAGATCTCACTTACATGTG AAATCTAAAAAACAAATAAACAAATAAACAAACAGACTTGTAGAAAAAAGAGACCAGAGTTGTGGTTACCAGAGGTG--- GAGGGGAGGGG-ACGGATAATTTGAGGAAGATGGTCAAAAGGTACAAACATCTAGTTGT--AAGATAAAGAAGTACTAGA GATATAATCTACAACATGATGACTATAGTTAACATAGCTGAATGGCATATTTGAAAGTTGTTAAGAAAGTAAATGCTAAG AGTT---ATCACAGGAACAAA------CTTTTTTCCCTTTTTTTGTATCTATATGAGATAATGG--GTATCA-CTACACT TATTGTGGTAATCATTTCATAATATAT--GTAAGTCACATCATTAAGCTATACACATCAAACCC-ATACAG-CCCTATAT GTCAATTATATCTCAAGAAAACTGGGATTTTTTTTTTTAA---AAGATACATTACACTCATA--ACAATA-ACA---CTG ATAGATATTGGCTGTTGGGCTTTCTATCCTGAAAGGCACTGTCTTTA >Manis_javanica AATATATCAT----AGGCACCAA-GGTTAAAT-CATTTAATTCTAAAACCCCACT---AAGATAAATTATATTTAACAAA A-----AAATCC--CCAAATAATCCAA----------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------TTAAAAAAT GGGAAAAGAACATGAATATATACTTTTT--------GAATTAAGATATATGAATGGCCAACAGGTATATGAAAAGATGCT CAGCATAACTAATCACTAGGGAAATGCAAAGCAA-AACCACAATGAGATTATCATCTCA-----TTTTAGAAAGGCTACC ATCATCTGTGGCATCTTGCTGTACTGATGGACAGTGACTGCATTGGGGTATGGATGGG-GACTTGATAATATGGGTAAAT GTAGTAACCACATTGTTTTTTCATGTNNTTCATGTGAAACCTTCCTAAGAGTGTATATCAATCATACCTTAATAAAAAAT TTTTTTAAAAAAGAAAGGCTATCATCAAAAAGAT--GAGATAACAAACGC---TGGTGAAGATGAGAAAAGGGAATTCTT GTGCACTGTTGGTAGGAATGTAAACTGGTACAGTCACTATTATTTTCACACACAC-----AAAACTATATGGAGGTTCTT CAAGAAATTAAAAATAGAACCACC---TTATGATCTAGCAATTCCACTTCT-GGGAATGTATCTGAAGGAAGCAAAAACA CTATATTGAAGAGACAACTGAACCCTCATATTT----CATAGCAGCTTTATTTACAATAGCCAAGACATGGGAACAACCT AAGTGTCCATTAACAGATGAAT-GTATAAAGAAACTGTG--------------GTATATATACATATGTGTGTGTGTATA AATGATACATTATTCAGCCA------------------------------------------------------------ -----------------------------------------TAAAAATACGTGAATCCTGCCATTTGGGCCATCCTGGAT GGAACTTGAAAACACT--GTGCTAAGCAAATTAAGTCAGAG----AAAGACAAATACTG-TATAATCTCGCTTATATATG GAATCTTAAAAAAG---------------AAAAAAACTCATAGGAAAATAA-ATCAAACTTGTGGTTACCAGAGGTG--G GG---TGAGGGGAGGGAGAATTGGATGAAGGT-GTCAAAAGGTACAAACTTGCAGTT-T--AAGGTAAGTAAGTTCTAGA GATGTAATGTACAACACGAGGACAATAGTTAACACTGCTGTATGGTATGTTTGAGAATT----AGAGAGTAAATCCTAAG AATTCTCATCACAAGGAAAAA----ACTTTCTTCTTTCTCTTTTGTCTCCATATGAGGTGATGG--ATGTCAACTAAACT TACTGTGGTAATCATTTCACAATTCAT--GTTAATGAAATTATTTTGCTGTATACCTCAAACTT-ATACAG-TGCTGTAT ATCAGTTATATCTCAATAACTCAGGAA--AATTTTTG------AAG-----TTATTCTTAAA--ACAATAAAAA---TTG GTAG-TATTGGTTGTTGGGCTTTCTGGTCTGAAAGGTACTATCTTTA >Equus_caballus GATACATCAC----TGTCTCCACCAGCTAAAT-CACTTAATTCTAAACTCCCATT---AGAATAAATCATATTTAGCAAA A----------GA-ACAAATAATCCAA----------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------TT-AAAAAT GGGCAAAGGGCCTGAATAGACATTTTTC--------CAAAGAAGACACATGAATGGCCCACAGGTCCATAAAAAGGTGCT CAACATAACTAATTATCAGGGAAATGCATATCAA-AACCACACTGAACT-ATCACCTCA-CACCTGCTAGAAAG------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------GCTACCATCAAAAAGACAAGAGATAACAAATGCCCTTGAGGATGTAGAGAAAA-GGAACCCTT GTGAACTGTTAGTGGGACTGTCAA------------------CTGGTATAGCCACTATGGAAAACAGTACGGAGGTTCCT CAAAAAATTAAAAATAGAACTACC---ATATGATCCAGCAATTCCACTTCT-GGGAATATATCCAAAGAAAATGAAAATA CTATGCAAAAGAGATATCTGCACCTTCATA-TT----AATAGCAGCATTACTTACAACAGACAAGACATGGAAATAATGT AAGTGTCCATCGAC-AATGAAT-ACATAAAGAAGTTGTG--------------GTGTATATATACACATATATA------ ------------------TAATTGTATATATAATATATATTATATATGTATATATGTATGCATATACATAATATATATGT GTATGTATATATGTATATACATATATATATAATTCAGCCATAAAAA-GAAGGAAATCCTGCCATTTGTCCCAAGATGGAT GGACCTCGAGGGCATT--ATTCTAAGTGAAATAATTCAGACAGAGAAAGACTAATACTG-TATAATTTCACTTATATGTG GAATCTAAACAACAA-----------------CAAACTCATAG-AAAAAGAGATCAGATTTGTGGTTACCAGAGATG--G GGGGTTGGGGG-TGGGGGAATTGGATGAAGGTGATCAAAAGGTACAAACTTCCAGTTAT--AAGATAAATAAGTACTAGA GATGTAATGTACAACACAACAACTATAGTTAATAATGCTGTATGGTATA-TTGAAAGTTGTTAAGACAGTAAATCCTAAG AGTTCTCATTACAAGGAAAAA--CATTTTTTTATTTTTCTATCTGTATCATTATGAGATGATGG--ATGTTAACTAAACT TATTGTGGTAATCATTTCAGAATACAT--ATAACTAAAATCATTACGCTCTACACCTCAAACTTCATACAG-TGCTATAT GGCAGTTATATCTCAATAAAACTGGAA-AAAAATTTTAAA---AAGATAAATTACATTTACA--ACAATAAACA---TTG GTAGATATTGATTTTGGAGCTGTCTGGCCTGAAAAGGACTGTCTTCA >Ceratotherium_simum GATACACCAT----TGGCTCCACCAGCTAAAT-CACTTAATTCTAAACTCCCATT---AAAATAAATTATATTTAGCAAA A----------AA-ACAAATAATCCAA----------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------TT-AAAAAT TGGCAAAGGTCCTGGACAGACATTTTTC--------CAAAGAAGATATATGAATGGCTAACAGGTATATGAAAAGGTGCT CAACATGAATAATTACCAGGGAAATACATATCAA-AACCACAATGAGAT-ATCACCTCA-CACCTGTTAGAATG------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------GCTATCAACAAAAAGACAAGAGGTAACAAATGCTGTTGAGGACATAGAGAAAAAGGAACACTT GTGAACTGTTTGTAGGGTTTTAAA------------------CTGGTATAGACACTATGGAAAACAGTATGGAGTTTCCT CAAAAAATTAAAAATAGAACTACCTAGATATGATCCAGCAATTCCACATCT-GGGAATATATCCAAAGAAAATGAAAACA ATATGTGAAAGAGATATCTGCATCCTCATG-TT----CATAGCAGCATTATGTACAATAGCCAAGATATGGAAACAACCT AAGTGTCCATTGAC-AATGAAT-GGATAAAGTTGTGGTATATATATGTATACTATATAGATACATACATACATA------ ------------------TAATTGTATATACAA---------------TATATATGTATACATATACACAGTATATATG- -----------------TATACATATATATAATTCAGCCATAAAAATGAAGGAAATCCTGCCGTTTGTGACAACATGGAT GGACTTTGAGGGCATT--ATTCTAAGTAAAATAAGTCAGATAGAGAAAGACAAATACTG-TATTATCTCACTTATACGTG GAATCTAAACAACAA-----------------CAAACTCGTAG-ATAAAGAGATCAGATTTGTGGTTGCCAGAGGTGGTG GGAGGTGAGGG-AGGGGGAATTGGAGGAAGGTGGTCAAAAGGTACAAACTTCCAGTTAT--AAGATAAATAAATACTAGG GATGTAACATACAACAGGAAGACTATAGTTAACAATGTCGTATGGTATATTTG-------TTAAGAGAGCAAATCCTAGG AGTTCTCAGCACAAGGAAAATAACATTTTTTTCTTTTTCTTTTTGTATCTATATGAGATGATGG--ATGTTAACTAAACT TATTGTGGTAATCATTTCACAAGTTAT--GTAAGTAAAATCATTACGCTGTACACCTCAAACTT-ATACGG-TGCTATAT GTCAATTATATCTCAATAAAACTGGAA-AAAAATTTTAAA---AAGATAAATTACATTTAAA--ACAATAAACA---TTG GTAGGTATTGGTTTTGGAGCTTTCTGGACTGAAAAGGACTGTCTTCA >Myotis_myotis GATGCATCAT----TGGCTCTAATAGCTATAT-CACTTAATTCTAAATTTCCAAA---AAGATAAATTATATTTAGCAAA A-------ATCCC-ACAAATATTCCAA----------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------TT-ACAAAT GGGCAAAGGCCCTGAATAGACATTCCTC--------CAAAGAAGATACATGAATGGCTAACAGGTACATGAAAAAGTGCT GAACATCACTAATCATTAGGGAAAAGTGTATAAAAAACCTAAGTGAGAT-ATCAGCTCATTCCCTGTTGTAGTG------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------ACTACTGTCAAAAAGACAAGAGATAACAAATGCTGTTGAGGATATGGAGAAAAAGGAACACTT GTGAACTGTTGGTGGGATTGTAAA------------------GTGATATAGCCACTTTTGAAAATAGTATGGAGGTTCCT CAAAAAAATAATAATAACACTACC---ATATGATCCAGCAATTCCACTCCTGGGGAATATATCCTAGGGAAACAAAACAC ATATATGCAATAGACATCTGCAGCACCATG-TT----CGTAGCACTATTATTTACAGTAGCCAGGACATGGAAACAACCT AAGTGTCCATCAACAAATTAAT-GGATAAAGTAGTTGTG--------------ATATATAT------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------GACAAAAAAAGACAAATG-----ACGGGCTCACTTACATGTT GGTTCCAAACAACAA--------------CAACAAACTCATAG-A---GGAGATTAGATTTGTGGTTATCAGAGGCG--- -GGTGTGGGGA-------AGCTGGATGAAGACGATC-AAGGCTACACA-TTCCAGTTAT-------AAATAAGCACTAGA GATGCAATGTACAACATGATGACTATAGTTAACACTGCTGCATGATATCTTTGAAAGCTGTGAAGAGAGTAAATTCTTTG AGTTCTCATCACAAAGAGAA-------------CCTTTCTTGGTGTATCTATGTGAGATGATGG--ATGTTAGCTAAGTT AATTGGGGTAGCCATTTCACAATATGT--GTAAATCAAATCATTATGCTGTACAATGAAACATATATACAA-TGCTATAT GTCAATTATAGCTCAACACAACTGGAA-AAG----TTACA---AAGACAAGTTACATTTAAA--ACAGTAAGCC---CTG GTAGACATTGGTTGATGGGCTTTCTCGCCTGAAAGGGACTGACTTCA >Rousettus_aegyptiacus GATACATCAT----TGTCTCCAACAGCTAACT-CACTTAATTCTAAACTTCCTTT---AAGATAAATTATATTTAGCAAA A--------TCATCATCATCA-TCCAA----------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------TTAAAAAAT GGGCAAAGGACCTGAATAATCATTTTTTTTTTTCCGCAAAGGAGATACATAAATGGCCAACAGGTACATTAAAAAGTACT TAAAATCAATAATAATTAGGGAAATGCATATCAATAACTAAAGTGAAAT-ATCAGCTCG-CCCTTGTTAGAGTG------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------GC-ATCATCGAAAAGACAAGAAATAACAAATGTTGGCAAGGATA-GGAGAAAAAGGAACCCTG GTGCATGGTTGATGGTATTGTAAA------------------CTGGTACAGCCACTAAGGAAAACAGTA----------- --AAAAATTAAAGATTGA---------ATATG------------------------------------------------ -------------------------------------TGTGTGTGTGTTATTC-----AGCCATAA-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------AAAAAAAAAAGAAATCCTGCCATTTGTGACAACATAGAT GGATCTTGAGGTCATT--ATGCTACGTGATATAA----GACAGAGAGAGAAGAATACTG-TGTGATCTAACTTACATGTG AAATCTAAACAGCAA--------------CAACAAAC--ATAG-AAAAAGAGGTCAGATTTGTGGTTGTCAGAGATG--- -GGTATGGGAG-AAAGGGAGTTGGATAAAGGTGGTC-AGAGGTACACACTTCCAATGAT--AAGACAAATAAGTACTAGA TACGTAATGTACAACGTGATGACTGTAGTTTACCA-GCTGCGTTGTATATTTGGAACTTGTTAAGAGAGTGAATCCT--G AGTTCTCATCACAAGGAAAAAAAAA----------CTTTTTTTAATATCTACATAAGTTGATGA--ATGTTAACTA-ATT TATTATGGTAATCATTTCACAGTATAT--GTAAATCAA---CTTATGCTGTACAACTCAAGCTT-CTATAA-TGTTATAT GTCAATTATAACTCAATAAAAGAGGAA-AAAATTTT---A---AAGATAAATTACATTTAAA--ACCATTAGCA---TTG GTAGATATTGGTTTCTGAGCTTTCTGGCTTGTAAAGGACTCTCTCTG >Sus_scrofa GATACGTTAT----TGGCTCCAACAGCTACAT-CATTTAATTCTAAACTGCTGTT------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------AAGGTAAATTATATTTAAAAAAAAATAAACA---TTG GTAGCTATTGGTAGGTGGGCTTTTTGGCCTAAAAAGGA----CGTTA >Bos_taurus GATATATCGT----TGGCCCCCCAAAACAAATGGATTTAAGTCTAAACTCCTGTT------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------AAG-----TTACATTTTAA--ATAGTAAATA---GTG GTAGCTACTGGTTGTTGGACTTTCTGGCCTGAAAGTGTCTTTCTTTA >Condylura_cristata GATACATCATTTACTATCTCTAACAACTAAGT-----CAATTCTAAACTCCAGTT------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------AAGATAAATGAAATTTGAA--ACAAAGAAC----TTG ATAGATGTTAGGCTTGAGGTTTTCTGGTCTAAAAGGGACTTTCCTGA >Sorex_araneus AATGCATTAT----AGGATTCAACAGTTAAAT-CTCTT----CTAAACTCCT-CT------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------AAAATAAATTACATTTAAT--TCCATGGACA---TTG GTGGATTTCAG--GTTGTGCTTTT--GCCTGAAAGGGACTTACTTTA >Homo_sapiens GATGCATCAC----TGGTTCCAAAAGCCA-AT-CACTTAATTCTGAGCTCACATT------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------AAAAGAAATTACATTTTAA--AAAATAAACA---TCA GTGGA-ATTGGTTGTTGGACTTTCTTTCCTGCAAAAGA----CTTTA Dog336_LINE >L1MA9_3END -------------------------------------------------------------------------------- --------------------------------------------------------------TTTTTCCAGCTTTATTGA GGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATATACGTATACATTGTGAAATGA TT---------ACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTACCATTTT------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------TT TGTGTGTGGTGAGAACACTTAAGATCTAC-TCTCT-TAGCAAATTTCAAGTATACAATACAGTATTATTAACTATA--GT CACCATGCTGTACATTAGATCTCCAGAACTTATTCATCCTGCATAACTGAAACTTTGTACCC------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------TTTGACCAACATCTCCCCATTTCCCCCACCCCCCAGCC--------------------- ----CCTGGCAACCACCATTCTACTCTCTGCTTCTATGAGTTTGACTTTTTTAG-------------------------- ------------ATTCCACATATAAGTGAGATCATGCAGTATTTGTCTTTCTGTGCCTGGCTTATTTCACTTAGCATAAT GTCCTCCAGGTTCATCCATGTTGT-------------------------------------------------------- -------------------------- >Canis_familiaris TTCTGCTGCCATGC-----------------------TGTGGCCACAGCTGAACACTGCATGCAGCCTTTATT---TCCT AAAAGATTGTA---------CCGCCCT-------------------T-TTAT--TTTT-----------AATTTTTTTAA GAT--------------AACATTACCTTAGTTTCAGGTGTACAACATAATGATTCAATATTTGTATATATTGTGAAATTA TC---------AT--CAAAAAATCTAGCTAAC--ATCTGTCACCATGCATAGCTGCAATTTTT----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------TT TTCTCGTGATGAGAACTTTTAAGATGTAC-TCTCT-TA---ATTTTCAAATATCCAAGACAGTATCATTAACAATGATGT CACCATGCTACACATTGCATCCCCATTGCTTATTT-------ATAACTGGAAGTTTGTACT------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------TTTGACT-ACCTTCTCCCACTTCACCCACTCCCCACATCCCATCCCCTATCTACT---- ----TCTGACAAATACCAATCTGTTCTGAGTTTGTTTGTTTTT----TTTTTGGGGGGGGGGGGAATTATT--------- ------------ATTTCACATGGAAGTGAAATTATACAGTATTTCTCTTTCTCTGCCCAACTTATTTCGCTTAGTATAAT CACCATAGGATGGA-------------CCTTGAGGGTTTCTTTG--TTTGTT---TTAAGATTAGAAACTACCTTCTTCT ACCTGTTAA-CCTCCACTCACTCCCT >Felis_catus TTCTGCTGCCACAT-----------------------TGTGGCCATATCTGAACACTGCATGCAGC-----------CCT GAAAAG---TA---------CTGGGTT---------------TTT-T-TTGT--TGTT---GTTGTTGTTGTTGTTTTAA GATATAATGGACATAT-AACATC---TTAGTTTCAGGTGAAAAACATGAT------TTATTTGTATACATTGTGAACTTA TC---------ACCACAAAAAGTCTAATTAAT--ATCTGTCACCATACATAGTTACAAATTTT----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------TT TTCTTGTGATAAGAACTTTTAAGATCTAT-TCTCT-TAACAACTTTCAAATACACTATACAGTACTATTAACTATC--AT CACCACGCTATACATTACATCCCCAGGACTTATTT-------ATAACTGGAAATTTGTACCT------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------TTTGACC-ACCTTCTCCCATTTCACCCA-TCCCCACATCCCCTCCCCTATCTACC---- ----TCTGGCAACCACCAATCTGTTCTCTGTCTCCA--AGTTCAGCTTTTTTGGTGGTGGGG----------------CA GACGTGGGTATTATTTTACATGTAAGTGAGACCGTAC-GTATTTGTCTTTCTCTGTATGACTTGTTTCACTTAGTATAAT GACCAT-GGATGGA-------------CCTTGAAGCCTTTT-----TTTTTT---TTAAGATTAGAAGTTACCTTG-TCT ACCTGTTAA-CCTCCACTCACTTCCC >Manis_javanica TTTTCCTGCCACCC-----------------------TGTGGCCATGTCTGAACATGACACTTGGCCTTTATT---ATCT GAAAAGTTGCA---------TTGGTGC------------------TTTTTTT--TTCT--------------------GA GGTATAATTGACATAT-AACATTATATTAGTTTCA-GTGTATAACATAATGATATAATATTTGTATTTA-TGCTAAAGAA TC---------CCCACCATATGTCTAGTTAAC--AT-TATCACCATGCATAGTTATAATTCC------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------TT TTCTTGGGATGAGATCTTTTAAGACC----TCTCT-TAGCAACTTTCTAATATACAACACAGCATCATTAACTGTA--GT CACCATACTGCACATTCCATACCTAGGACTTACCTGCTTT--ATAACTGGAGGTTTGTACCTTTTCTTTACTACATTATT AAATGTTTATTCCAACTAGTATACTTACTATCTGTAAGTATAACATAGCAGTTATATAGAATGATGTTATAGAATTATTG ACTATATTCTCTATGCTGTACTTTCATCTCCATAACTAATTTATATTATAATTGAAATTCTGTGCCTCTTTATCCCCTTC ACCTAGTTTGAAGTTTGTACCTTTGGCC-ACCTTTATCCATTTTGTCCACTTCCCACCCCCACCCCCATCTCTCCTCCCT CATGTCTGCCAACTGCCAATCTATTTTCTGTATCTATGAATTC-GTTTTTTTGTTGG----------------------- ---------------CCACATATGCATGAGATCATACAGTATTTTTGTTTCTCTGTCTGACTTATTTCA-TCAGTATAAA CAACAT-GGATGGA-------------CCTTGGGGGCT--------TTTTTT---TTAAGATGAGAAGTTACCTTC-TCT ACCTGTTAA--CTCCACTCACTCCCC >Equus_caballus TTTTCCTGCCACAC-----------------------TGTGGCCACGTCTGAACACTACATGTGGCCTTTCTT---CCCT GAAAAGTTGTA---------TAGTCGT--------------ATCA-C-TTTT--TTTT----------------TTTTGA GATGTAATTAACATAT-GGCATTATATTAGTTTCAAGTATACAATATAATGATTCAATATTTGTATATATTGTGAAGTGA CC---------ACGACGATAAGTCCAGTT-----ATCCACCACCACACACAGTTATAAAATTTTTTCTTTTTTTTTCGAG GAAGATTAGCCCTGAGCTAACATCTGCTGCCAATCCTCCTCTTTTTGCTGAGGAAGACTGGCCCTGAGCTAACATCCATG CCCATCTTCCTCTATGTTATATGTGGGACACCTACCACAGCATGGCTTGCCAAGCAGTGCCATGTCCACACCTGGGATCC GAACCGGTGGACCCCGGGCCGCTGAAGCGGAACGTGTGCACTTAACCACTGCGCCACTGGACCAGCCCCTATAAATTCTT TTCTTGTGATGAGAAC-TTTAAGATCTAT-TGTCTCTAGATAGTTTCAAATATACAATACAGTATTATTATCTATG--GT CACGATGCTGTACGTTACATCCCCAGGACCTACTTATCTT--ATAACTGGAATTTTATACC------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------TTTGACC-CCCTTCACCCATTTCGCCTACTCCCCACGCTCACCCCCTCTGAC------- ----TCTGGCAACCATCAGTCTAGTCTCTGTATCTATGAGTTT-GTTTTTTTGGTGGTGGTGGGTTTTGTTTTTGTTTTT GTTTTTGTTTAGATTCCACATATAAGTGAAATCATACAGTATTTGTCTTTCTCTGTCTGACTTATTTAACTTAGCGTAAT GAACAT-GGAAGGA-------------CCTTGAGGGCT--------TTTTCT---TAAAGATTAGAAGTCACCTTC-TCT ACCTGTTAA-CCCCGACTCACTCGCC >Ceratotherium_simum TTTTCCTGCCACAC-----------------------TGTGGCCATGTCTGAACACTACATGTGGCCTTTATT---CCCT GAGAAGTTGTA---------TAGTTGT-------------------A-TTGC--TTTT---------------TTTTTGA GATGTAATTGACATCT-GACGTTATATTAGTTTCAGGTGTACAACATAAT---TCAATATTTGTATATATTATTAAATGA CC---------AC--TAATATGTCAAATTAAC--ATCCATCACCACACATAGTTACAAATCTT----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------TT TTCTTGTGATGAGAAC-TTGAAGATCTAC-TCTCTCTAGATACTTTCAAGTATACAATACAGTATTATTAACTATA--GT CTTCATGTTGTACATTACATCCCCAGGACTTATTTATCTT--ATAACTGGAATTTTATACCT------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------TTTGACC-CCGTTCACCCATTTAGCCCACTCCCCATCCTCACCCCCTCCGAC------- ----TCTGGCAACCACCAATCTATTCTCTGTACCTATGAGTTT--GTTTTTCGGTGGTGATGAGTTTTGGTTTTGGTTTT GTCTTAG-----ATTCCACATATAAATGAGATCATACAGTATTTGTCTTTCTCTGTCTGACTTATTTCACTTAACGTAAT GAACAT-GGATGGA-------------CCTTGAGGAC---------TTTTTT---TTAAGATTAGAAGTTACTTTC-TCT ACCTGTTAA-CCCCTACTCACTCCCC >Myotis_myotis TT-TGCTGCCACCG-----------------------TGTGGCCATGGCTGAGCACTACAAGTGGCCTCTGTT---CCTT GAAAAGTTATA---------CTGGTTTGGTTGGGGTAGGGGGGGTGT-TTGT--TTGT----------------TTTTGA CATACAATTGACATGT-AACATTCTATTGGTTT-AGGTGTATGACATAATGATTTGGTATTTGTATACATTTCAAAATAA TTCACCATAAGATCACAGTCAGTCCAATTAAC------------------AGTTACAATT-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------TT TTCTTGTGGTGAGAACGTTGAAGATCTACTTCTCT-TAGCCACTTGGGGATATGTAACACAGTGTAGTTAACTACA--GA AACCAGGAAGTACTT------------------------------------ACTTTATACCC------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------CATGACT---------------------------------------------------- ----TTTG-----------------CTTTGT----------------TTTTAAG-------------------------- ------------ATCCCACATTTCAGTGAGCTCACACGGTTTCTGCCTTTTTCTGCCTGACTT-CTTCACTCGGCGTGAT GAACAG-GGGTCGT-------------CCTTGAG------------TGTTTG---CTAAGATTAGAAGTTTCCTTC-TCC ACGTGTAAC-CCCCAGCTCACTCCTC >Rousettus_aegyptiacus TTCTCCTGCCACCC-----------------------AGAGGCCATATCTGAAAACTACATATGGTCTCTAGT---CCCT GAAAAATTGTA---------TTGCCTC----------------------TTT--TTTT-----------------TTTGA GATATCATTGACATAT-AACATTTTATTCGTTTCAGTTGTACAACATAAT---TAGATATT--TACCTATTGCAAAATGT TCTACAATAAGATCATGATACATCTAGTTAAC--ATCCATCACCACAC--AGTTATAATTTTT----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------TT TTCTTGTGATAAAAAC--TTAAAATCTAC---TCT-TAGCAACTTTCAAATACATAAAATAGTAATATTAACAAA---GT CGCTGTGTTCT------------------------------------------TTTATACTC------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------CATGACT---------------------------------------------------- ----TTTG----------------TTTTTGT----------------TTTTTAG-------------------------- ------------ATTCTGCACATAAGTGAGATCATGTGGAA--TGTCCTTCTCCAACTGACTTATCTCACTTAGCATAAG GAACAT-GCATGGT-------------CCTTGAAGGCTTTGGGTTGTTTTTT---TTATGATTAGAAGTTACGATC-TCT ACCTGTTAGTCCCCCATTCATTCCCC >Sus_scrofa TTTTCCCGCCACAC-----------------------TGTGGCCACATCTGAACACTACACCTAGTCTTTATT---CCCT GAAAGGTGGCAGACTAGAAGTTGTCTT---------------CCA-T-TCCT--TTTT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------GAAGGAATGGAAGGTACCTTC-TCT ACGTATTAA-CCCCCATGCATCCCTC >Bos_taurus TTTTCCTGCCACAC-----------------------TGTGGCCATGTCTGAACACTACACATGGCCTTTACT---CCTT GAAAAGTGGTA---------TTGTGTT--------------TATGTT-TTTT--TTTT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------GAAGGACTGGAAGTTACCTTC-CTT ACCTGTTAA-CCCCCATGCACTCCCC >Condylura_cristata TTTTCCTGCCACAC-----------------------TGTGGCCAAGACTGAACACTACATGTGACCTTTATT---GCCT GAGAAGAGGTA---------CCTCTTT---------CTTTTTATTTT-TTCT--TTTT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------GTAGTATTAGAAGTAGTTACC-TTG ACCTGTCAA-CGCCCAAATACACCTA >Sorex_araneus TTTTCCTGCCACAC-----------------------TGTGGCCATGTGTTGACACTACACATGACCTGACAT---CTCT GGAAAATGGCA--------------------------TTTTAATTTTGTTCCTTCTCT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------GCAAGAATAGACG---------CAT CCCTATGAA-CTCCCACTC-GCCCCA >Homo_sapiens TTTTTCTGCCACACTGTGGCCACGTCTGAACACTACATGTGGCCACGTCTGAACACTACATGTGGCCTTCATT---CCCT TACATGTGGTA---------TTTGGAG-----------------TTTTTTCC----AA---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------TGAAGATTAGAAGTTACCTTT-TTT ACCTATTA--TCCCCATTCAGACCCT Dog337_LINE >L1MA9_3END -------------------------------------------------------------------------------- ------------------------------------------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAA ATTGTAT-ATATTTAAG--GTGTACAACGTGATGTTTTGATATACGTATA--CATTGTGAAATGA----TTACCACAATC AAGCTAATTAACATATCCATCACCTCACATA--------------GTTACCATTTT-TTTGTGTGTGGTGAGAACACTTA AGATCTACTCTCTTAGCAAATTTC-------------------------------------------------------- ------------------------------- >Canis_familiaris ATAAAACA--TCTCTGTTTT------TTTTTTTTTTAATCCTAGCTCAGGAACCTGCC---TGTTATTATTTCTCCTCCT CCTCC-----------------------------GTCCTC-TTCCTGTTAGCTTTAGTGGGCTACAGTTGACATAAAAAA ATGGTAAGACAGTCAAA--GTATGCCCTGTGGTAACTTGATATATGTATA--CATCGTGGAAAGG-----TCCTGTGGGC CGCCTGAGGAACATATCCATCACCTCACATGGTTGTC--------TTTTTTTTCTTTTTTTTTCCTGGTGAGAACATCTG AGTTCTACCCTCTT-------------TCCCTTTCTTCTTTTTTATATTTGT---AATTTAACGCCCG-GAAGACACTC- TGTTGTGCCAGACTAAGGAGGCAGGTCACCC >Felis_catus GTAAACCA--TCTCCGTTGG------TATTTTTTTCAATCCTAGTTGGGGAATCT-CC---TG-TATTATTTCTCCTCCT CCTCC---TCCTCCTCCTCCTCCTCCTCCTCCTCTTCCTTGTTAATTTCAGCCTTAGTGAGGTACAGTTGACCTGT-AAA ATGGTAAGGTATTTACA--GTATACATTGTA---------------------------CAAGGGC-----TTCCTCCATC CAGGTAATGAACCCATTCATCACCTCACATAGGCTTTTTTAAATTTTTAATTTTT--TTTTTTCCTGGTGAGAACATTTA AGTTCTACTCTCTT-------------TGTATTTCTCCTTTT--CTATTTTT---AATTTAATGCCTG-CAAGATACTC- TTTGGTGCTAGATGAAGGAGTTTGATTACTT >Manis_pentadactyla AAGAAACGCCTCTCTGTTGG------TATATTTTA-GAGCCTAGGTAGAGAATGTAAC---TG-TATT-CTTCTTTT--- -----------------------------------------AAAATCTCAGCTTTATTGAGGTATAACTGCTGTGTAAAA ATTGTATGATACTTAGAGAGTATACATTGTGATGATTTGATATATGTACA--CATTGTGGAAGGA-----GTCCCACATC TAGTTAGTGATCACACCCATCACCTTGAATA--------------TTCACCTTT---TTTTTTCTTGGTAAGAGCATTTA ATTTCTACCCTCTT-------------GGTATTTCTTCTTTT--ATACTTTT---AACTTAATGCCTG-GAATACACCC- TTTTGTTCTAAATACAGCATTTAGATTACTT >Equus_caballus AAGAAACATCTCTCTGTTGG------TATATTTTT-GATGCTACATAGGAAATCTGCT---TG-TATTTCTTCTTTTCTT TTTTT-----------------------------------TAAAATTTCAGCTTTATTGAGGTATTATTGACATAT-AAA ATTGTAAGACATTTAAA--GTACATATTGTAGTGATTTGATAT---TATGTACATTGTGAAAGGA-----TTCCCTCATC CAGTTAATGAACAATTCCATCACCTCACATA--------------CTTATCTTT---TTTTTTCTTGGTGAGAACATTTA GGTTCTACTCTCTT-------------TCTATATCTTCTCTG--ATATTTTT---AATTTAATACCTG-CAAGACACCC- TTTTGTGCTAAATTAAGGCGTTAGATTAGTT >Tapirus_indicus AAGAAACGTCTCTCTCTTGG------TATATTTTT-GATCCTAG-TAGGGGATCTGCC---TA-TATTTCTTCTTCTTCT TCTTT-----------------------------------TTTAATTTCAGCTTTATGAAGGTATAATTGTCATAT-AAA ATTGTAAGATATTTAAA--GTGTACATCGTGGTGATTTGATATATATATATGCATTGTGAACGGA-----TTCCCCGATC TAATTAACGAACAGTTCCATCACCTCACATA--------------TTTACCTTTT--TTTCACCTCGGTGAGAGCATTTA AATTCTACTCTCTT-------------TCTATTTCTTCTCTT--AAATTTTT---AATTTAATGCCTG-CAAGACACC-- TTTTGTGCTAAATTAAGGAGTTAGGTTAGTT >Myotis_myotis AAGAAACATCTTTTTATTGGTATATATATATTTTT-TATCCTAGATAGGGAATCTGCC---TG-TATTTTTTTTTCTCCT TCTTC----------------------------------TTTTAACTTCAGCTTTATGGAGGTATAACTGACACAT-AAA ATTGTAAGATATTTAAA--GTGTACATTGTGGTGATTTGATATATGTATA--CAATGTGAAAGGA---ACCCCCTCCTCG TAGCTAACGAACAAATCCATCACCTCACATG--------------TTTCTCTTTTTGTTCTTCCTTGGTGAGAACATTTA AGTTCTACTCTCTT-------------TGTATTTCTCCTTTT--ATATTTTT---AATTTAATGCCCA-GAAAATATCC- TTTTGTGCTAAATTAAGGACTTAGGTTAGTT >Rousettus_aegyptiacus AAGAAACATCTCTCTGTCAGTATA--TATATTTTT-TATCCTAAGCAGAGAATCCGCC---TG-CATTTCTTCTCCTTCT TCCCT------------------------------TCCTC-TTAATTTCAGCTTTACTGAGGTATAATTGACATAT-AAA TT--TCAGATATTTAAA--GCGTACATCATGGTGATTTTATGTGGAAAGA------GTGAAAGGACATCTTTCCCCCGTG TAGTTAATGAATATATCCATC-----------------------------TTTTCTTTTTCCCCTTGGTGAGAACATTTA AGTTCCACTCTCTT-------------TGTATTTCTTCTTCT--GCATTTTT---AATTT---------AAAGACATTCT TTTTGTGCTAAATTAAGGAGTTAG-----TT >Sus_scrofa AAAAAAGAGCTCTCTGTTGG------TATATTTGT-GATCCTAGGTAGGGAATCTGCC---CA-TATTTCTCCTTTT--A TTTT---------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------AAT-----GCCTG-GAAGACACCC- TTTTGCACTA-----AGGGGTTAGATGAGTT >Bos_taurus AAGAAACATCTCTCTGTTGG------TTTACTGAT-GATCCTAGGTAGAGAATCTGTC---TG-AATTTCTTCTC----A TTTTT--------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------AACTTGATGCCTG-AAAGACACCC- TTTGGGGCTAAGTTAAGAAGTTAGATTAGTT >Condylura_cristata AAGAAACATCTTTTTAATAA--------TATCTGT-GATCCTAGGCAAGGACTTTTCT---TG-TT-TCCTTCTTTTTTG TCTTT--------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------AATTCAATGCCTG-GGAGATATA-- TTTTGTGCTA-----AGGAACTAGGTCAGTT >Erinaceus_europaeus AAGCACGGCCTCTCTGCGGG------AGAGTCTGT-GATCCTAGACAGGAAAGGAGCC---TG-CATTTCCTTTCCCGCA GTTTC--------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------AGTTCAATGCTTG-GGAAATAAGC- -TTTGTGGCATGTTAAGGAGTT--TTTTATT >Homo_sapiens AAGAAACACTTCTCTGTTGA------TATATTTGT-GATCTTAGATAGGGAATCAGCC---TG-CATTTTTTCTTTTATA TTTTT--------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------AATTGAATACCTATAAAGACACCC- TTTTGTGTTA-----AGGAGTGAGATTGGTT Dog339_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------TTTTTCCAGCTTTATTGAGGTATAATTGACA---------------AATA-AAAA TTGTATATATTTAAGGTGTACAACGTGATG-TTTTGATATACGTATACA-----TTGTGAA-ATGATTACCACAATCAAG CTAATTAACATATCCATCACCTCACATAGTTACCA----T-TTTTTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCT TAGCAAATTTCAAGTATACAATACAGTATTATTA-----------------ACTATAGTCACCATGCTGTACATTAGATC TCCAGAACTTAT---TCATCCTGCATAACTGAAACTTTGTACCCTTTGACCAACATCTCCCCATTTCCCCCACC------ --CCCCAGCCCCTGGCAACCACCATTCTACTCTCTGCTTCTATGAGTTTGACTTTTTTAGATTCCACAT----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------ATAAGTGAGATCATGCAGT ATTTGTCTTTCTGTGCCTGGCTTA-------------------------------------------------------- --------------------------------------------TTTCACTTAGCATAA--------------------- -------------------------------------------------- >Canis_familiaris AATTTTCCATTTGGGAATGTATACCCCTCAGACCATTT-CAAATGAATTAT----------------------------- -AA--------TTTTTTTATTG--------------------AGGTACAATCGACA-----------------TATAATA TTCTATTAGCTTCAGGTGTACAACATTAAGATTTTGATGTTTGTGCACA-----TTACAAACGTCATCATCACAATAAGT CTAGTTACC--ATCCACCACCATACATGGTTGAAA----T-TTTTTTTTAGGTGACAAAAACCTTTAAGATGTACTCTCT TAGCAGCTTTCCTATAGACAATA-AGTATTATTA-----------------CCTATAGTCACCATATTGTACATTACATC TCCATGATTTAT---TTATTTT--ATAACTGTAGGTTTGTACCTTTTGACCCTCTTCACTCATTTTACTCACTTCCCACC CACTCTCTCCTTTGGCAACCACCAGTCTGTTTTCTACATTTATGAACTTGGCTTTTTTGTTT---ATTTG---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------GTTGGTTGGTTGGTTGGTT GGTTGGTTGGTTTGATTTGGTTTG-------------------------------------------------------- --------------------------------------------GTTTG-------------GTTTCTGATTA---TATT GGTCACAGGTAT--ATATTATTGT-GATATGGAGGTT-ATTCACCTTGAA >Felis_catus AATTTTCCATTTGAGAACCTGTACCCTTCAGACCATTT-CAAATGAGTTGT----------------------------- -AAT------TTTTTTTTATTG--------------------AGGGACAATTGAGCTTTTTTTATTGAGGGACAAAGCTA ATATATTAGCTTCAGGTGTACAACATTAATC-TTTGATGCTTGTATACA-----TTGCAGCAATGATCATCATGGTAAAT CTAGTCACC--ATCCATCACCATACAGAGTTAAAT----T-TTTTTTTCATGTGATGAGAACTTTGAAGATACAGTCTCT TAGTAACTTTCAAATACGCAATA-AGTATTATTA-----------------CCTATAGTCACCATGCTGCACATTACATC CCCATGACTAAT---TTATTTT--ATAACTGGAAGTGTGTACCTTTTGGCCCCTTCCATC-ATTTCACCCATTTCCCACC TACCTTCTTCCCTGGTGACTACCAATCCGTTTTCTGTGTTTATGAGCTTGGCTCTTTTG--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------TTTGTTTAGTTGGTGTG-------------------------------------------------------- --------------------------------------------GTTTG-------------GTTTCTGATTG---TATT GGTCATAGGTGT--GTATCACAGT-GATGTAGAGGTT-ATGTGCCTTGAA >Manis_javanica AATTCTCCATTTGAGAACCTGTGAATTTCAGACCATTT-CAAGTGAATTAT----------------ATATATATATAT- ATAT---------TTTTG-TTG--------------------AGGTACAGTTGACA-----------------TATAACA TTATATTAGCTTCAAGT-TACAATATAATGA-CTCCATATTTATATATACAGTATTGCAAA-ATAATCACTACAATAAGT CTAGTTACC--ACCCATAA--AAATATAGTTACAAAAA-G-ATTTTTTTATGTGATGAGAACTTTTAAGATTTACTGTCT TAGCATCTTTCAAATAAGCAATACATTATTACTA-----------------ACCATAGTC---ATACTGCACAGTACATC CACAAGGCTTGT---TTATTGT--CTAACTAGAAGTTTGCACCTTTTGACTGCCTTGATCCACTTCACCCCCCT------ -GCACTGTCCTCTAGCAACCACCAATTTCTTCTCTGTATCTCTGAGCTTAGTTTTTTTGTTTTGTTTTTGAGGTAGGAAA AGTACTAGTACTGGCTGAACGGATGGCTAACCCGGGAGAGCATCAACAGGATGTGGTCACCCACTGGTATAAACCAGTTG GTTCCAATATGGAGGACAGTTCAACTCTCAAGTCACCCTCACCCAAAGCTCATTATAGACTCATTAGCCTACTGAAAATC ACTGCCCTCAGCACCATGATTGCTCTGAGGCAGACCATGTAAGGAGAAAAGAGGGTGTCAGACTATTTCCTCCAAATCCC CCCCCCCTATTCTAAAAAAATCCCACCTATCCAGATGATATTCCACCTTTGGCTTAAACTTTAGCTATAGACACCTAACG CAAACCTCACCAAGCTGCTTACCTTTTGAGCATTCCTGCACTCCCTCCTTGAGTGTGTACTATTGCTTTATTAAAATACT CTTTGCTTGCACTTGCTTGACCTGCTTATGAATTCTTTCTCGGCTGGAGTCAAGAGCCCTCTCCTGGCTTGAGGTCACAC CCAGAGCGCAAGAAGACCTCCCCAGACTGGATTTCCTGACAGCACTTTG-------------ATTTCTGATTG---TGCT GGCCATAGGTGT--GTATCACAGT-GATATGGAAGTT-ATTTGCCTTGAA >Equus_caballus AATCTTTGATTTGAGAACCTGTGCCCTTTAGACCATTT-CAAGTGAACTGT----------------------------- -A---------TTTTTTTATTG--------------------AGATATAATTGACA-----------------TATAACA TCGTACTAGTTTCAAATGTACAACATAATGA-TTTGATATTTCTATACA-----CTTTGAA-ATGATCACCACAATAAGT CTGGCTAAC--ATCCATCACCATACATAGTTACAA------TTCTTTTCATGCGATGAGAAATTTTAAGGTTTATTCTCT TAGCAACTTTCAAATACGCAATACAGTATTATTA-----------------ACTATGGTCAGTACGATGTACATTACATC CCCATGACTTAT---TTATTTT--ATACCTGGAAGTTTGTACCTTTTGACTCCCTTTTCCCA-CTCCCCCCACCCCATCC CACCCCCTCCTCTGGCAACCACCAATCTGTTCTTTGTGTCTATGAGCTTTTTTTTTTC---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------TTTGCGTACTCGTTTTG-------------------------------------------------------- --------------------------------------------TTTTG-------------ATTTCTGATTG---TATT GGCCATAGGTGT--GCATTACAGT-GATATAGAGCTT-ATTTGCCTTGAA >Ceratotherium_simum AATTTTCCATTTGAGAACCTGTGCCCTTCAGACCATTT-AAAATGAATTGT----------------------------- -AAT------TTTTTTTTATTG--------------------AGGTATAGTTGACA-----------------TATAACA TTATATGAGATTCAGATGTACAACATAACGA-TTCTATATCTATATACA-----CTGCAAA-ATGATCTCCACAATAAGT CTAGTTATC--ATCCATCATCATACGTAGTTACAC----TTTTTTTTTCATGTGATGAGAACTTTTAAGATTTATTCTCT CAGCAGTGTCCAAATGTGCAATACAGTATTATTA-----------------ACTATGGTCACTATGCTGTACAT------ -----GACCGAT---TTATTTT--ATAACTGGAAGTTGATACCTTATGACTCCTTTTACCAATTTCCCCCCACCCCACCT CACCCCCTCTTCTGGTAACTACCAATCTGTTCTCTGTATCTATGAGCTTGTTTTTTTT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------T-----------GTTTG-------------------------------------------------------- --------------------------------------------TTTAG-------------ATTTCTGATTG---TATT GGCCATAAGTGT--TCATTACAAT-GATATACAGGTT-ATTTGCTTTGAA >Myotis_myotis GA-TTTCCATATGGGAACCTCTG--CTTCAGAACATTGTCAAACAATTTCC----------------------------- -AAAAG----TTTTTTTTATTG--------------------AGATATAATTGACA----------------------CA TTACATTAGTTCCAGGAGTACAACATAATGA-TTTGATCTTTGTATCTA-----TTGCAAA-ATGACCACCAAAATAAGT CCAGTTACC--ATGTTTTAC--TACATAATTTCAAAAATTAATTTTTTCACGTGATGAGAACGTTTAAGACTTATTCTCT TAGCAACTTTCAAATCCAAAACACAGTATTAACAGGAGTAAGGGACAAAATACTGTCGTCACCACACTGTACAT------ --CACAGCCTATGCCTTCTTTT--ATAACTGGAAGTTTGTACTTTTTAACCCATTTTGCCCA----CCCCCAC------- --CCTCCACCTCTGGCGACCACGAATACATTCTCTGCATCTATGAGCCTGGTTTTTGC---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------TT----------GTTTG-------------------------------------------------------- --------------------------------------------TTTTG-------------CTTCCTGATTG---TATT GGCTGCAGATGT--GCATTATAGT-GATACAGAGGTT-ACTCGCCTCAGA >Rousettus_aegyptiacus AATTTTCCATTTGAGAACCT--GCCCTGTGGACCACTG-CGCACGAACCAT----------------------------- -AGAAAA---GAAAAAGCATTG--------------------AGGCGTAATCGACG-----------------TACAACA TGATATTAGTTTCCAGTGTACGAATTACCGA-CTCGACATTTGTACACA-----TTGCAAA-ACGATCACCACGATAAGT CTAGTTCCC--ATCCGCCACCGTTTAT--TTACAACGATT-AATTTTTCGGGCGAGAAGAACTTTTATGATTTGCTCTCT CAGCGGCTTTCAAATACGCAGTGCAGTAGCGTTA-----------------CCTTTAGTCGCCGTGCCGTNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------NNNNNNNNNNNNNNNNN-------------------------------------------------------- --------------------------------------------NNNNN-------------NNNNNNNNNNN---NNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Sus_scrofa AATTTGCTGTGTGAGAACCTGAGCCCTTTGGACCATTT-TAAAGGAATTAT----------------------------- -AAA-------ATTTCTGATTG---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------------TATT GTCCATCCATGT--GAATTACCAT-GATATAGAGGTT-CTTTGCCTGGAA >Tursiops_truncatus AATTTTCTAATTGAGAAACTGTGCCCTTCAGACAGTTT-TAAATGAATTAT----------------------------- -ACA-------ATTTTTTATTG---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------------TATT GGCTATACATGT--GTATTACAGT-AATAGAGAAGTT-ATTCACCTGGAA >Condylura_cristata GATTCCCCATTGAAAAACCTTTGCCCTCCAGACCACTT-CAAGTGAATTGT----------------------------- -AAA-------ACATCTGATTC---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------------TGTT GGCCACAGACAA--GTGCTACAGT-AACATTGAAGCT-ATTTAACTGGAA >Erinaceus_europaeus AATTTTTCGCTGGAGAATCTGTGCTCTTCAGATTGCTT-CAAACAAATTGT----------------------------- -GAA-------ATTTCTGTCTG---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------------TAGC ATCCATAGGT-TGAATGTTACTGA-CACATAGAGGCCGATATGACTTAAG >Homo_sapiens ACTTTGCCATTTTTAAACCTGTATTCTTCATATCATTT-CAAATGAACCGTTCCGGTTGTATTGGCCATGTGTGTCTATT ATAA-------GCTTCAGCTTG---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------------TATT GGCTGTGTGTGTGCGTATTATTGCAAATATAGAAGTC-ATGTGTCTTGCA Dog340_LINE >L1MA9_3END -------------------------------------------------------------------------------- ------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAAT-----TGTATATATTTAAGGTGTACAACGTGATG TTTTG--AT--ATACGTATACATTGTGAAATG---ATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGT TACCATTTTTT-TGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAAATTTCAAGTATACAATACAGTATTATTA ACTATAGTCACCATGCTGTACATTAGATCTCCAGAACTTATTCATCCTGCATAACTGAAACTTTGTACCCTTTGACCAAC ATC-------TCCCCATTTCCCCCACCCCCCA-----GCCCCTGGC--------AACCACCATTCTACTCTCTGCTTCTA TGAG-TTTGACTTTTTTAGATT-------CCACATATAAGTGCATGC--------------------------------- -------------------------------------------- >Canis_familiaris GGTTTCCTTGGGGATC--TGTGTCTTG------TGCTCCACTTAAGACTC------TTTCC---AACTTCCTATGAA-TT TTT-----CCTCCAGTTTTGTTGAGATATA----GCATAT---AAT-----TGCATTAATTTAAGGTGTGTAACATAATG ACTTG--AT--AC-CTTATACATTGCAAAATA---ATCACCACACTAAGTTTAGCTAGC--ATCCATCATCACATAT--- -ACAATTCTTT-------TGATGAGAACTTTTAAGATCTACTCTCTCCACAGTTTTTAAATATGCAATACAGTATTGCTA CCTATAATCACCATGCTCCATATTATAC----------------TTTTAC--AAATGCAAATTTGAACCTATTGACCACT TTCACCAACTTCTTTCTTCTGTCCACCCC--AACCAAGCCTCTTGCAACCACCAAACCACCAATCTGTTCTCTG------ -----TTGGATTTTTTCAGATT-------CCACATAT-------------ACTTGCTTATTACTTGTC---TTTCAGTGA GGGTACATCCCCTAAATTCTCAGCCAGCCACACCTTTTTGGGGG >Felis_catus GGTTTTCTTGAGGCTC--TATTTCTGG------TGTTCAACGTACGGCTC------TTCCC---AACTTTCTATGACTTT CCC---CCCGCCCGGTTTTATTGAGATATAATTGAGATAT-GACATATAAGTGCATCGGTTTAACGTGTACAGCATAATG GCTCG--CT--AT-CTTGTGTGCGGCAGAATGGTAATAACCACAATAAATTTAGTTAAC--ATCCACCTTCACACAT--- -ACAATTCTTT---CTTTTGATGACAACTTTGAAGATCTAATGGC---ACAAGTTTTACATGTGCAATACAGTCTTGCTA ACTAGAGTCACCATGCTGTACGGTAAGC-------------ATGCCTCAC--GACTGCAAGTCTGAACCCTTTGACCGCC TTCACCCGCTTCCTCCTTCTCCCCACCCCC-AGCCACGCCTCTGGC--------CGCCATCAATCTTTTCTCTG------ -----TTGGATTTTTGAAGATT-------CCATATAT-------------TCTCACTTATCACTTTTC---TTGCACTCA GGGTGCATCCTTTAAATTCGAAGCCAGCCACACCCCTCTTTGGG >Manis_pentadactyla GGTTTTCTTGAGGGTCACTGTGTCTGC------TGTTCAATGTGTGACTTTT----TTTCC---ATCTTCTTATGT--TT TCC-----CCCCCAGTTTTGATAAGAGATAATTGGCATGT-AACAT-----TGTATTAGTTTAAGGGGTGCAACATAATG -TTTGACATACATACATATATATTGCCAAAGG---ATCACCATCCTAAGTTTAATTCAC--ATTCATCACCTTCAACAGT CACAATTCTTCTTTCCTGTGATGAGAATTTATAAGATCTACTCTCTTAGCAACTTGCAAATAT-----ACAGTATTATTA ATTAAAGTCACCTTGCTGTATGTCATATTGCCAGGACTGATTTGTCTTTC--AGATGACAGGT-GCACC-TGTGACCCCC TTCA--------CCCTTTCCCCTGACCCCAACGCTATGTCTCTGGA------------------------TCTA------ -----TTGGTTTTGTTTTGTTTTTCTCCCCCACATAT-------------ACTTGCCTGTTACTTTCC---TCTCAGTGA AGATTCATGCTCTAAAATCATGGCCAGCCACACCCCTCTTTGGG >Equus_caballus GGTTTTCTCGAGGATCCCTGTGTCTTGATCACTGAGTCAACTTATGACTCTT----TTTCC---ATCTTCCTATGAC-TT TTT-----CCCCCAGTATTGTTGAGATATAATTGACATAT-AACAT-----TATATTTGTTTCAGGTGTTCAACATAATG -TTTG--AT--ATAGGTACATATTATGAAATG---GTTACCACAATAAATTTAGTTAAC--ATTCATCACCTCCCATAGT CACAATTCTTTTGACTTTAGATGAGAACTCCTAAGATCTACTCTCTTGGCAACTTTCAAATATCCACTACAGTATTGTTA ACTATAGTCACTATGCTGTAAATTACATCTCCAAAACT---TTGTCTTAC--AACTGGAAGTTGGTACGTTTTGACCATC TTCATTCATTTCTACCTTCATCTCGCTCCCCAACCATGCCTCTGGC--------CACCACCAATTTGTTCTCTGTTTCTA TAAGTTCAGTTTCTTTTAGCTT-------CTGCGTAT-------------ACTTGCCTATTACTTTTC---TTTCAATGA --GTTTATACTTTAAAGTCACGGCCAGCCACACCCCTCTTTGGG >Tapirus_indicus GCTTTTCTTGAGGATCACTGTATCTGG------TGTTCAACTTATGACTCTT----TTTCC---ATCTTCCTATGACATC CCC-----CCCCCAGTTTTGTTGAGATATAATTGGCATAT-AACAT-----TATATTTGTTGCAGGTGTACAATACAATG -TTTG--AT--ATACGTATATATTCTGAAATG---GTTACCTCAATAAATTTAGTTAAT--GTTCACCACCTCACATCGT CACAGTTCTTTTTTCTTTTGATGAGAACTTTTAAGATCTACTCTTTTAGCAACTTTCAAATATACAATACAGTATTGTTA ACTATAGTCACTATGCTGTAAATTATATCTCCAAAACTTACTTGTCTTAC--AATGGGAAGTTTGTACCTTTTGACCATC TTCATCCATCTCCTCTTCCTTCTCACTCACCGCCCATGCTTCTGGC--------AACCACCA---------CTATTTCTA TGAATTCAGGCTTTTTTAGATT-------CCACATGT-------------ACTTGCCTATTACTTGTC---TCTCAATCA GTGTTTATCCTCTAAAATCACAGCCAGCCACACCCCTCTTTGGG >Rhinolophus_ferrumequinum GGTTTTCTGGAGGACCA--GTGTCTGG------TGTTCAACGTACGACTCTT----GGTCC---ATCTTCCTACGAC-TT TTT--------TCAGTTTTGTTGAGCTATGACTGACATAT-GAAGT-----TGCTTTGGTCTAAGTTGCACACCTTAATG -TGCG--AT--ACGAGTATGTGCTGTGCAGCG---ATCACCTCAGTAAGTTTGGGTAAC--GCCCGTCACCTCACATAGT CACAGTCGTTT-----CCTGGTGAGAACTTTTAAGGTCCACTCTCTTAGCAACTTTCAAATATACAGGACGGTGTCGTTC CCT--GGGCGCCATGCTGTAC-TGACATCCCTCGGG---------CTTAC--GACTGGAAGTG-GTACCGTTTGGCCACC CTCA-------CCCCTTTCTCCCCCACCCCCA-----GCCTCCGGC--------AACCTC--GTCTGTTCTCTG------ -----TTGG--TTTTGGGGGTT-------CCACACAC-------------ACTTGCCTGTAACTTTCC---TTCCAGCAG GTGCTCATCCTCTAAAATCACGGCCAGACGCACCCCTCTTTGGA >Pteropus_vampyrus GGTTTCCTCGA---TCACAG--TCTGG------TGTTCCACTCAGGACTCTT----TCTCC---ATCTTCCTGTGGTTTT TTT-------TCCAGTTTGGTGGACGTGTAATTGGCACGT-GACAT-----CGCGTTGGTTTAACG-------------- -TCTG--ATGCACGTGTATAGGGTGTGAAATG---GTCACCGCAGTAA-----GTTAAC--GCCCATCACCTCACATAGT CATAGTTCTTTCTATCTTTG----------------------------GCAACTTGCAAACACGCAGTGCAGTGTTGTTT ACTGTGGTCACCCCGCTGGACATCACATCCCCACCGTGTATTTGTCTGAT--GGCTGGAGCTTCGTACCTTTTGACCACC TGCACCCACTTCCCACTTCCCCCG--CCCCTACCTGAGGCCCTGGC--------AGCCCCCAGCCTGCTCTCCT------ -----TTGG--TGGTTTAGACT-------CTGCGTAT--------------CCTGGTAACTTTTTTCT---TTGCTGTGA GTGTCCCCTCTGGAACACCACGGCCAGCCACGCCCCGCTTCAGA >Sus_scrofa GGTTTTCTTGAGGATCACTATGTCGAG------TGTTTAACTTATGACTCTTT---TTTCC---GTATTCCTGATAC-TT -TC----------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------TTACAATGA GTGCTCATCCTCTAAAATCACAGTCAGCCACACCCCTCTTCAGG >Bos_taurus GGTTTTCTTGAGGTTTGCTATGTCTGG------GGTTCAACTTGGGACTCTT----TTTCT---ATCTTCCTAATAC-TT GTC----------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------TTACAATGA GTGTTCATCCTCTAAAATCACAGCCAGCCACACCCCTCTTTGGG >Condylura_cristata GGTTTTCTTGAGGGTCACTGTGTCTGG------TGTTTAGCTTATGACTGAT----TTTCC---ATCT----ATTAC-TT TTC----------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------TTTCAATGA GTGTTAATCCTCTAAAATCATGGCTA-CCACACCCCTCTTTGGG >Solenodon_paradoxus GGCTTTCTTGAGGGTAACCTGCTGTCC------TGTTCAACTTCCAACTCTT----CTTCT---ATCT----------TT GTA----------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------TTTC--TAA GTGTTGATCCTCCCACAT-ACTGTCAGCCACACCCCTCTTTGGG >Homo_sapiens GGTTTTCTTGGAGACCGTGGTGTCTGG------TGTTCATCTGATGACACTGCTTTTTTTG---CTTTTCCTCCAAC-TT TTC----------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------CTTCCATGA GTGTCTATCCTCTAAAATTATGGCCAGCCACACCCTTCTTTTGG Dog341_LINE >L1MA9_3END ---------------------------------------------------------------------------GATGT TGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGTACAGCATGGTGACTAT----- --------AGTTAATAATACTGTA-TTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCACCACACACA AAAAAATGGTAACT-ATGTGAGGTGATGGATATGTTAATTAGCT-TGATTGTGG-TAATCATTTCACAATGTATACG--- ---TATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAA AA------------------------------------------------------------------------- >Canis_familiaris TAAGCAGTCATCAGTTTCAGTCCAGCTAAAATTG---ACACTT--CCTACAGAG-T---TGAAAACCAATTT-------- ------AAGGATACAAACTTACAACTAGG--AGATAAGTAAGTTCTAGAAATCTAATGCACAACTCGGTGATTAT----- --------AGTCAACAATACCATA-CTGTAAATTTCAAAGTTGCCAGAGGACTAAATCTTAACTGTTCTCAGCACA-AAA GAGAAATTATAAAT-ATGTGATATGATAAAGGTATTAGTTAACA-CTACTGTAA-TAACCACATTGTAATACATAAACGT AAGTGTACCAGAACAACACAATGTGCCCTTTAAACTTACACAA-TATTATATATCAATTATATGTCAGTTTT-------- -------AAAAAAAAC-----T---CAGCAGGCAAATCTGATTCCTATCTGATCATAATGGAAGTCTCTAGCCAT >Ailuropoda_melanoleuca CAAGCAGTCATCAGTTTCAGTCCAGTCAAAATTG---ACACT---TCTGCAGGA-C---TGAAAACCAATTT-------- ------AATGGTACAGCCTTACAACTAGT--AGATAAATAAGTTCTGGAGATCTAATGCACGACATGGTGATTAT----- --------AGTCAACAATACCATA-TTGTAAATTTCAAAGTTGCTAGCAGACTAAATCTTAACTGTTCTCAGCACA-AAA AAGAAATTATAAAT-ATGTGATATAATGAAGGTATTAGCTAACA-TTACTGTAA-TAATCACAT-GTAATACATAAGCAC AAATGTACCAAAACAACACCGTGCACTCTTTAAATTTACGTAA-TACTATATGTCAATTATATGCCAATTAAAAA----- -----AAAAAACTTAT-----T---CAGCAGG-GAATCTGACGCCTATCTGAGAATAATGGAAGTCTCTAGCCAT >Manis_pentadactyla TAAGCAGTCTTAGATTTCAGTCTGGCCAAAATTG---ACACTTA-CCTGCAG-G-T---TCAAACCC-ATGT-------- ------AAGGATATAAATTTGCAACTAGT--AGATAAGTAAGTTCTGGAGATCTAATGCTCAGCATAGTGATTAC----- --------AGTCAACATTACTGTG------AATTTCAAAGATGCTAAGCACTAAAATCTTAACTGTTCTCAACACA-AAA AAGATAACA------ATGTTGCATGATAAAGGCATTTGCTAACAGCTAATGTAGTTAATTATATTGTGATATATGAA--- ---TGTATGAAACCAACATGATATACACCTTAATCTTACATAA-TATTTTATTTCAATTATTTCTCAATTT--------- -----AAAAAACTGTT-----T---CAGCTGG-GAATCTGGCTTCTGTC--AGGAAAATGAAAGTATCTGACTAT >Equus_caballus TAAGCAGCCATCAGTTTCAGTATTGTCAAAATTG---ACACTTT-CCTGCAGAG-T---TCAAAACCAATAT-------- ------AAA---ACAAACTTACAACTAGT--AG----ATAAGTTCTGGAGATCTAATGCACAGCATAGTGATTATATTGA GGATAATAAGTCAACAATGCTATATTTATAAACTTCAAATATGCTGAAAGACTAAATCTTAACTATTCTCAACACA-AAA AGGAAATGATAAAT-ACGTGACATGATAAACGTATTAGCTAACA-CTAGTGTAG-TAATCATATTGCAATATATAAA--- ---TGTATCAAGTCAGCACGTTGTACACCTTAAACTTATACAA-TGTTATATGTCAGTTATATCTAAAGTGAA------- -----AAAAAACAATT-----T---TAACAGG-GAGTCTGGCTCCTATCTGAGGTTAATGGAAATCTCTGGCCAT >Tapirus_indicus TAAGCAGCA--CAGTTTCAGTACTGTC-AAATTG---ACACATT-CCT-CAGAG-T---TCAAAACCAATGT-------- ------AAGGGTACAAACTTACAACTAGT--AGATAAATAAGTTCTGGAGATGTAATGCACAACATAGTGATTAT----- --------AATCTACAGTACTGTATTTATAAACTTCAAATATGCTAAGAGACTAAATCTTAACTGTTCTTAACAAA-AAG AAGAAATCATAA---ATATGACAT------------AACTAACA-CTACTGGGG-TAATCATATCGCAATATATAAA--- ---TGTATCAAATCAACACGTTGCACACCTTAAACTTATACAA-TGTTATACGTCAATTATATCTCAATTA--------- -----CAAAAACAATT-----T---TAGCGGG-GAGTCTGGCTCCTATCTGAGATTAATGGAAGTCTCTGGCCAT >Myotis_myotis TAAAAAGCCATCAGTTTCAATCTTATCAAAAACG--GACACTTT-TCTTCAGAG-T---TCAAAACTAATTT-------- ------AAGGATACACATTTACATCTTGC--AGATAAATAAGTTCTGGAGAGTTAATGCACAACCCAGGAATTAT----- --------AGTCAAAAATACTGTA-TTATAAACTTCAAACATGCTCAAAGATCAAATCATAAGTGTTCTAAAAACA-AAA AAGAAATAATGAAT-ATGTAACATGATAAAGATATTAGCTAG-A-GTACTGTAT-TAATC-TATTGTAAAATATAAA--- ---TGTACCAAACCAACACATTATACATC-TAAATTGACACAA-TACTATATGTCAATTATCTTCTATATATA------- -----TAAAA-----------------------------GGTTCATATCTGAGGATAATGAAAATCCCTGGCCAT >Rousettus_aegyptiacus TAAGCAGCCATCAGTTTCAGTCTTGTCAAAATTG---ACACTTT-CCTGCAGAG-T---TCAAAACCAATTT-------- ------ATGGGTACAAATTTACAACCAGT--AGA---------TCTGGAGATCTAAAAAACAACATAGTAATTAT----- --------AGTCAACGATACTGAA-TTATAAACTTCAAAGATGTTTAGAAACTAAATCTTAACTGTTCTCAACACA-AAA AAGAAATAATAAATAATGTAACAT------------------TA-CTACTATAG-TAATCATATTGCAATATATAAA--- ---TGTATTAAACTAACACATTATAGACA-TAAATTTACACAA-TATTATATATAAATTAAAAACAA------------- -----CAACAACAATT-----T---AAGCAGG-CAGTTAGGCTCCT----GAGGGTAATG-AAGTCTCCAGCCAT >Sus_scrofa TAAGCAGCCACCAGCTTCCATTGTGTCAAAACTG---ACTCTTG-CCTA-AGAG-T------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----CAGGACCAGTT-----T---CAGCAGA-GA---CGCACCCTCCCTGAGGGTCACGGGTGTCCCTCTCTGT >Bos_taurus TAAGGGGCCATCAGCTTCAGTCCTGTCAAAACTG---ACACTTT-CCTACAGAG-T------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----CAAAACCCTTC-----T---CAGCAGG-GAGGCTAGCTTCTATCTGAGGGTAATGGAGGTTTCTGGCCAT >Condylura_cristata TAGGCAGCTGTCAGTTTCGGGTCTGTCAAAATAG---ACACTTTCCCTGCAGAGTT------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----TAAAACCACATAGGAGC---CAGCAGG-GAGGCTGGTTCCTATGCGAGGCTAATAGAAGTCTCTGGCTAT >Erinaceus_europaeus TAGG-------------CAGTTCTGTCAAAATTA---GTACTTTTCCTGCAAAC-T------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----CAAAACCAACT-----T---CA-CAAA-GAAGCCAGCTCCAGTGTCAGGTCAATCAAAGTCTCTGGCTCT >Homo_sapiens TAGGAAGCCATGGGTTTCAGTCCTGTCAAAACTGACAACACTTT-CCTGCTAGGTT------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----TAAAACTTATT-----T---CGGTAGG-GAGACTGGCTCCTATCTGAGAATAAAGGAAGTCTCTGGTCAT Dog342_LINE >L1MA9_3END -------------------------------------------------------------------------------- ----TATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCA CGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA---------------- --------------------------------------------------------------- >Canis_familiaris GAGGGAAACAAAAGGTACCTTTTGTACACTTAC-TTTCATTTAATG-AAACATTTAGATA---AAGA---TATCATCGTT A---------------ATCCTTTTACAGTGGGGAAATCATAATGAATCATTTCACAATGTATATGTATGTCAAATCACCA CAATGTACACTTCAAATACCTTAAAATTTTATATGTCAAGTGTACCTCAATAAAGCTGAAATTTAAAAAAT---AAAATA CCACAGTTA---CCTCTGCATCTTTGTTTTCTTTATTTTGTTCCCT-GATTGTAGACATTAGG >Felis_catus AAAGGAAACAAAGTG-CTCTTTTA-ACACTTAC-CTGCATGTT-TG-AACCATTTAGATT---AAAA---TATCACCATT A---------------ATCCTTTCACAGTGGGGAAATCATAGTGAATGATTTCACAGTGGATATGTATATCACATCACCA CAATGTACACTTTAAACATCTTACAGTTTTATGTGTCAATTATACTTCAATTAAGCTGAAATTAAA-AAAA---ATAATA TACCAGTTA---TCTGTGTGTCTTTATTT-----ATTTTGTTCCCT-GATTACAGATAATAGG >Manis_javanica GAGGGAGACAAAGGCTCCCTTCTA-ACCCTTAC-C-----------------------------------TACCATAGTT C---------------ATCC------------------------------TTCACAATGTGTATGGGTATGAGATCGCCA TGATTTACTCTTT-ACTGTCTTACAGTTGTGTGTGTCAATTATACCTCTATAAAGCTGAAA-TAAAAAAAT---AAAATA CCTTAGTTC---TCTGTGTGTGTGTATTTTCTTTATT---TCCCTA-GGTTGTAGATCATAGG >Equus_caballus GAAGGAAACAAAGGCTGCCTTCTG-ACACTTAC-CTTCCTTTAATA-AAACACCTAGATT---CAAA---TACCAAAGTT A---------------ATCCTTTCACAATGGGGACATCATGG-GATTCCTTTCACAATGCA----TATATCAAATCACCA TGATGTACACTTTAAATATCTTACGATTTTATATGTCAATTATACCTCAATAAGACTGAAATAAAACAAAT---AAAATT TCAAAGTTT---TCTGTGTGTCTTTATTTTCTTTATTTCATTCCCTAGATTGTAGATCATAGT >Ceratotherium_simum GAAAGAAACAAAGGCTGCCTTCTA-ACACTTAC-CTTCATTTAATA-AAACACCTAGATT---AAAA---TACCAAAGTT A---------------ATCCTTTCACAATGGGGAAATCATGGGGAATCCTTTCAAAATGTATACATATATCAAATCACCA TGATGTACATCTTAAATATCTTACAATTTTGTATGTCAATTATACCTCGATAAAACCAAAATAAAA-AAAT---AAAATG CCATAGTTA---TCTGT--GTCTTTATTTTCTTTATTTTGTTCCCTAGATTGTAGATCATAGG >Myotis_myotis GAGGGAAACAAAGGCTCCCTTCTA-GCACTTCA-CTTCATTTAGTA-AAACATCTCTGTG---AAAAGGTTACTATAGTT A---------------CTCCTTTCACAATGGGGAAAGGATAGGGAACCCTTTCACAGTGTATACGTATATCAAATAATCA TGATGTACACTTCATATATCTTA-AATTTTACATGTCAATTATACCTCAATGAAGCTGAAATAAAA-AACT---AAAATA CCATAGTTA---CCTGT--GCCTTTATTTTCTTAATATTGTTCCCTGGCTTGTGGGACATAGA >Rousettus_aegyptiacus GAGGGAAA-----------------ACACTAACACTTCATTTAACA-AAACAGCTAGATT---AGAA---TACCACAGTT A---------------ATCCTTTCACAATGGGGAAATCACAGGGAATCCTTTCACAATGTATATCTGTATCAAATCACCA TGATGTACACTTTAAATATCTTACAATTTTATATATCAATTATACCTCAATAAAGCTGAATTAAAA--AAT---TAAATA CCATAGTTA---TCTGTGTGTCTTTATTTTCTTAATATTGTTCCCTAGATTGTAGATTATAGG >Sus_scrofa GAGAGAAACAAAGGCTCCCTTCTA-ACACTTAG-CTTCACTTAATA-AAGCACCTCGATT---AAAA---TACCGTAGTT A------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------TCTGTGGGTCTTTGTTTTCCTAATTTTGT-CCCGAGATTGGAGATCATAGA >Tursiops_truncatus GAGAGAAACAAAGCCTCCCTTCAA-ACACTTAG-CTTCACTTAATA-AAGCACCTCAATG---AAAA---TACAGTAGTT A------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------TCTGTGTGTCTTTATTTTCTTAATTTTGT-CCCTAGATTGTAGATCACAGG >Condylura_cristata GGGGGAGTCAAAGGCC-CCTTCTA-ACCCTTCC-CTTCACTTAATA-AA-CACTGAAGTC---AGA----TGCCATAGGG G------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------TCTGCACACCTGT------------TTCTTCCCTGGATCGTTGACTGGAGA >Uropsilus_gracilis GAGAGAGACAGAGGCT-CCTTCAA-ACCCTTAC-CTTCA-TTAATACAA-TACTGAGATT---AAAA---TACCAAAGAT A------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------TCTGCATGCCTCAGTTCTCACTGTTCTCTTCCCTAGATCAGAGATCATAGG >Homo_sapiens GAGGGAAACGAAGACTCCCTTCTA-ACACTCGC-CTTCATTTAATA-GTACACCTAGATT---AAAA---TAGC--AGTT T------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------TCTGTGTGTCTTTATTTTCTTTCTTTT-TCCCCTAGATTGTAGCTCGTAGG Dog343_LINE >L1MA9_3END -------------------------------------------------------------------------------- ------------------------------------------------AATACTGTATTGTATACTTGAAATTTGCTAAG AGAGTAGATCTTAAGTGTTCTCACCACACACAAAAAAATGGTAACT-ATGTGAGGTGATGGATATGTTAATTA---GCTT GATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTG TCAATTATACCTC---AATAAAGCTGGAAAAA------------------------------------------------ ---------- >Canis_familiaris TTGCAA----AGTTAA--------------------------------------GATC-TTATGAAGAA----CTTCTTA AAATCAAATATT-TTAAAAGA---AA---TAATAAAAACTT-GCT---------GTGTTATATACTTCAAAGTTTCTAAG A---TTAATCTTAAAT-TTTTCACCACAAAATG--AAACAATAATTAATGTGACATGATCGGGGTGTTGGCTAAATGCT- -ATGGTGGGAATCACACTGTATTACATCAGTGTATGGAATCAACACATTGCACACTTTAGATTTAAACAA-TGTAGTATG TCAGTTATATCTC---AATAATAAAAAAAAACTTACT---TAGTCAGTTTCCTCTTCTTTAAACCATTTTTACTCCTGAG AATTAAAAAA >Felis_catus TTGCAA----AGTTAA--------------------------------------GATCATTATGAAGAC----CTTTTTT AAATAAACTATTTTTAAAGAA---AGTAGTAAGAAAAACTTAAAC---------GTATTGTATATTTCAAAGTT--TTAT GGATTGGATCTTAAATGTTTTCACCACAAAAGG-GAAACAATAATT-ATGTGACATGATGGAGATGTTGGCTAAATGCT- -AT--------------------------------------AATACATCGCACAATTTACATTTACACAA-TGTTACATG TCGGTTATATCTT---CATGATAAAGAACAACTTACT---TAGTCAGTTTCCTCTTCTTTAAACCATTTTTACTCCTGAG AATTAAAAAA >Manis_javanica TTGCAA----AGTTAA--------------------------------------GATCATGATGAAGAA----TATTTTT AAATGAAATATATGTAAGTGA---AATAGTTAGAAAAACTT-ACT----------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------TAGTCAGTTTCCTCTTCTTTAAACCATTTTTACTCCTGAG AATTTAAAAA >Equus_caballus TTGAAA----AGTTTA--------------------------------------GATTATTACGAAGAGCATTCATTTTT ATATGAAATATTTGTAAATGA---AATAGTAAGAAAAACTT----------------------ACATCAAAGTTGCTAAG AGACTAGATCTTAAGTGTTTTCACCACAAAAAGAAAAATGATAATT-ATGTGACATGGCGGAGGTGTTAGTAAA--GCT- -ACAGTGGTAATCATATTGCAATATATTGA-GTATCAAATCAACACATTGTACACCTTACACTTCCACAA-CCTTATATG TCAATTATATCTC---AATAAT-AAAAAAAACTTACT---TAGTCAGTTTCCTCTTCTTTAAACCATTTTTACTCCTGAG AATTAAAAAA >Ceratotherium_simum TTAGAACAAAAGAT----------------------------------------GAAAATTTAGAAGAA------TTTTT ATGTGAAATATTTTTAAATGA---AATAGTAAGAAAAACTT-ACT---------GTATTATATATGTCACAGTTGCTAAG AGACTAGATCTTATGTGTTTTCACCACAAAAAG-AAAATGATAATT-ATGTGACATGATGGAGGTGTTACCTAAA-GCT- -ACAGTGGTAATCATATTTCAATATATAAACATATCACATCAACACATTGTACACCTTAC---------A-CAATGTATG TCAATTATATCTC---AATAAT-AAAAAAAACTTACT---TAGTCAGTTTCCTCTTCTTTAAACCATTTTTACTCCTGAG AATTAAAAAA >Myotis_myotis TTGTAA----TGGTAA--------------------------------------CATCATTATGAAGAA----CATTTTT AAAGAAAATATTTTAAAATGA---AATAGTAAGAAAAACTT-ACT---------GTATTACATACTTAAAAATTGCTAAG AGACTAGACTTTAAGTGTGCTCACCACAAAAAG-AAAATGATAATT-ATGTTACA-GATGGAGATGCTATCTAAT-GCT- -AGAGTGGTAATCATATTGCAATATGTAAATCTGTCAAGTCAATACATTATACACCTTAAACATGCACAA-TGTTAAATA TCAATTATATATC---AATAAC--GAAAACACTTACT---TAGTCAGTTTTCTCTTCTTTAAACCATTTTTACTCCTGAG AATTAAAAAA >Rousettus_aegyptiacus TTGGAA----AGTTAA--------------------------------------AATAACTATGAAGAA----CATTTTT AAATGAAATATTTTTTAATTA---AATAG---GAAAATATTTACT---------GGATTACGTACTTCAGAGTTGCTAAG AGACTAGATCTTAAAGGTACTCACCACAAAAAG-AAAATGATTATT-ATGTGACATGATGGAGACGTTAGCTAA--GCT- -ATAGTGATAATCATA---CAATACATAAATATATCAAGTCAATACATTGCATACCTTAAAGTTATACAA-TATTAAATA TCAATTATATCTC---AATAATAATAAAAAACTTACT---TAGTCAATTTTCTCTTCTTTAAACCATTTTTACTCCTGAG AATTAAAAAA >Sus_scrofa TTGAAA----AGT-----------------------------------------GATCATCATGAAGCA----TATT--- -------------TTAAATGA---AACAGGAAGAAAAACTT-ACT----------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------TTGTCAGTTTCCTCTTCTTTAAACCATTTTTACTCCTGAG AATTTAAAAA >Bos_taurus TTGGAA----AGTGAA--------------------------------------GATCATTATGAAGAA----TATTT-- -------------TTAAATGA---AATAGTAAGAAAAACTT-ACT----------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------TAGTCAGTTTCCTCTTCTTTAAGCCATTTTTACTCCTGAG AATTAAAAAA >Condylura_cristata TTAAAA----AGATCAAGATGATGACCACAACAAGAATATAATGAACACAATATGATTATTATGAAGAA----CATTTTG AAGTGAAATATTTTCAAATGA---AATTGTAAGAAAAACTT-ACT----------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------TAGTCAGTTTCCTCTTCTTTAAACCATTTTTACTCCTGAG AATTAAAAAA >Sorex_araneus TTGGAA-------TAA--------------------------------------TATCATTATTGAAAA----CATTTTA AT-----------TTAAATGA---AATAGCGAGGAAAACTT-ACT----------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------TAGTCAGTTTCCTCTTCTTTAAACCATTTTTACTCCTGAG AATTAAGAAG >Homo_sapiens TTGGAA----CGTTAA--------------------------------------GATTATTATAACAAA----CATCCTT -------------TTAAATGA---CATAGTAAGAAAAACTT-ACT----------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------TTGTCAGTTTCCTCTTCTTTAAACCATTTTTACTCCTGAT AATTAAAAAA Dog345_LINE >L1_CARN7_3END ----------------------------------------------------------------------------ATGG TGACAGATGGTAACTAGACTTATTGTGGTGATCACTTCACAATGTATACAAATGTCGAATCACTATGTTGTACACCTGAA ACTAATATAACATTGTATGTCAATTATACTCAAATAAAAAAA-------------------------------------- ----------------------------------------------- >Canis_familiaris TTATTCCA-TTTTATTATTCGTGCATTAATCCATCCA----TGGCTAACTACCAG----AAAAAGGTCAGATA------- ---TGGGTGCTAACTGGATTTATTGTGATGATCATGGTGCTGTACACACAAATATGGAATCATTATGTTGTACACCTGAA ACTAATATAATGT--TATGTCAGTTATACCCCGACTT-------AAAC---ATAAAAGGT----TA---AAGTTTTA--- -----GGAGTATGTAGAAGAGAGTTAAGTCAGGTGTAGCTGAGAAGA >Lynx_canadensis TTATTCCACTTTTTTTATTCAGGCGTTAATTCATCCA----TGGCTGAGTACCGT---AAGAAAAGTCAGATA------- ---CGGATGCTAACTGGATTTACTGTGGTGATCGTTTCACAATACATACAAATATTGAATCATGATGCTGTACGCCTGAA ACTAATATAATGT--TATGTCAGTTATACCTCAACTT--------------AAAA--GGTCAAGT--------------- -----GGGGCACATGGGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNN >Manis_pentadactyla TTACTCAA-TTCTATTATTCACGCATTAATTCATCCA----TGGCTAAACACCCT---CAGAAAGGTCAGATG------- ---TGGAGGTTGACTGGACTTCCTGTGGTGATCATTTTGCAGTATACTCCAATAACAAATCATTGCATTGTACACCTGAA ACTTATATAACCT--TATGTCAGTTATACCTCAATTTTTT-----------AAAA--AGTTAGGTA---AAATTTCG--- -----TAAGTATCTAGAAGGGA--TGACTCTCTACTAGCTGAGAAGG >Equus_caballus TTATTTGA-TTCCTTTATTCATGCATGAATTTACCCA----TGGCTA------------AGGAAGGTCAGATC------- ---TGTATGTTAACTGGACATTCTGTGGTGATCGTTTTGCAATATATACAAATGTTGAATCACCACACTGTACACCTGAA ACTAATATAATGT--TATGTCAGTTATACCTCAATTT--------AAG---AAACACGGTCAGATA---AAGTTTCA--- -----GGAGTGTCTAGAAGGGAGATGAATCACTTCTAACTGAGAACA >Ceratotherium_simum TTATTCGA-TTCTATTATTCATGCATGAATTTATCCG----TGGCTA------------AGAAAGGTCAGATA------- ---TGGATGTTAACTGGACAGTCTGTGGTGATCATTTTGCAATATATACAAACATTGAATCACTACATTGTACACCTGAA ACTAATATAGTGT--TATGTCAGTTATACCTCAATTT--------TAA---AAACAAGGTCAGATA---AAGTTTCA--- -----GGAGTATCTAGAAGGGAGATAGATCACTTCTAGCTGAGAAGA >Myotis_myotis TTATTTGA-TTCCATTATTCATGCATCAATTCAGCCA----TGGCTCAGTACCAT---TAAAAGAGGCAGAAA------- ---TGCGTGTTAATTGGATTTATTGTGGTGATCATTTTGCAATATATGTGAATAGCAAATCATCATGTTGTACACTTGAA ACTAATATAATGT--TATGTCAATTATACCTCATTTTTTTTTAAAAAA---AAATAAGGTCAAATG---AAACTTGA--- -----CGAGCACCTAGAAGGGAGATAAGTCACTTCTAA--GCATAGA >Rousettus_aegyptiacus TTACTGTA-TTTCATTATTCATGTATTAATCTATCCATGGCTGGCTAAGTACCAT---AAGGAAGGCCAGAAA------- --ATGGATGTTAATTGGACTTACTGTGGTAATCATTTTACAATATATACAAATACCAAATCATTATATTGTATACCTGAA ACTAATATAATGT--TATATTAACTATACCTCAATTA------AAAGG---AAAAAAGGTCAAATA---AAGTTTCATGA GTACCTGAGTACCTAGAAGGGAGATAAGTCACTCCTATCTGAGCAGA >Sus_scrofa TTAGTTTA-TTCTATTTTTCAGGCATTAATTCATCCA----TGGCTAAATACCAT------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------AGGAAAAATTAGATA---AAGTTTCA--- -----TGAATACCTAGAAGGGATTTAAGTCCCTTCTAGCTGAATGGA >Bos_taurus TTATTTGA-TTCTGTTTTGCATGCATTAATTCATCCA----TGATTAAATATCAC------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------AGGAA-TGTCAGATA---AAGTTTCA--- -----CAAGTACCTAGAAGGGATTTANNNNNNNNNNNNNNNNNNNNN >Condylura_cristata GTATCTAA-------TATTCATGCATTAATTCATCCT----TGGCTAAGTACCAT------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------AAAAAAGGTCAGAAA---ACTTTTCA--- -----TGAGTACCTAGAAGGAAG--AGGGCATACCCAGCTGAGAGGA >Solenodon_paradoxus TGATCTGA-TTCTATTATTCATGACTTAATTCATCCA----TGACTAAGAACCAC------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------AAGAAA----AGAAA---AAATTTCA--- ------GAGTATCTACCAGTGG--TATATCATTTCTAGCTGAGAGAA >Homo_sapiens TTATTTGA-CTCTATTATTCGTATAATAATTCATTCA----TGGTTAAGTACCAT------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------AAGAATGGCCAGGTA---AAGTTTCA--- -----TGAGTACCTGGAAGGTA--TAAGTCA-TTCTAGCTAAAAGAA Dog347_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------TTTTTCCAGCTTTATTGA GGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATATACGTATACATTGTGAAATGA TTACCACAATCAAGCTAATTAACATATCCATCACCTCA-CATAGTTACCA--TTTTTTTGTGTGTGGTGAGAACACTT-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AAGATCTACTCTCTTAGCAAATTTCAAGTATACAATACAGTATTATTAACTATAGTCACCA TGCTG-TACATTAGATCTCC------------------------------------------------------------ ------------- >Canis_familiaris ATCAAGCATTGGGAGAAAAACTATTACTAATAGCAACTTTGTTTTTTTTTTTCTAAAGATTTTATTTATTTTTTCATGAG AGATACAGACTAAGAGAGAGAGGCAGAGACACAGGTGGAGGGAGAAGTGGCTCCTCTCAGGGAGCCCAATGCGGAACTCG GTTCTGGATCGCGGGATCATGACCCAGCCAAAGGCAGGTGCCTAACCACTGAGCCACCCAGGCATCCCACAACTTTGGTT TT-----GAAAGAAA---TATCC----TTTCT-------TTTTCTTTTTTTAGGATTGA---TTTTT-----TTAATTGC TGTGTAACTGACATATAACAC---TATTAGTTTCAAGTGTACAACATAATGATTTGATATTTGTACATACTGCAAAATGG TCACCACGATAAATCTAATTAAT--GCCTATCACCATT-CATAGTT------TGTTTTTCTTGTTGATGAGAACTTTTAA GACCTATTCTTTGGGATCCCTGGGTGGCTCAGTGGTTGAGGGTGTGCCTTTGGCTCAGGTTGTGATACCGGAGTCCTGGG ATCAAGTCCCACATCGGGCTCCCCACAGGGAGCCTGCTTCTCCTTCTGCCTATGTCTCTGCCTCTTTCTGTGTGTCTCTC ATGAATAAATAAATTTAAAAAGACCTACTCTTTTAGCAACTTTCAAATATATGATACACTATTATTAACTGTAGTCA--A TGCTG------------------TACCC----TTTCT---AACAGTAT-TTAACCATTCAGAGTCC--ACAATTTATTAG GGATATTCCAAAT >Ailuropoda_melanoleuca ATCAGATGTTGGGAG-AAAACTACTAATAATAA----------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------CTTTGGTT TT-----GAAAGAAA---TATCC----TTTCT-------TTTTCTTTT---AGAGTTGA---TTTTT----TAAAATTGC GGTATAATTGAC-TATAACAT-TATATTAGTTTCAGGTGTACAACATAATGATTTGATATTCAGATATACTGCCAACTGG TCACCACAATAAATCTGGTTAAC--ATCCATCACCATT-CATAGTTAAC---TTTTTTTCCTTGTGATGAGAACTTTT-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AAGACCTACTCTCCTAGCAACTTTCAAATATGTGATACAATATGATTAACTACAGTCA--A TGCTG------------------TACCC----TTTCT---GACAGTAT-TTAACCAGTCAAGGTCA--ACAACTTATTAA GGATATTCTGAAT >Manis_javanica ATTAAATATTGGGAG-AAA---ACTACCAATA------------------------------------------------ -------------------------------------------------------------------------------- --------------------------------------------------------------------ATAACTTTAGTT TC-----CAAAGAGT---TACCC----TTTCT-------T----TCCTTTTAGAGTTGAATTTTTTT-----TGAATTGA GGTATGATTGACATATAAC------ATTAACTTCAGGTGTACAACATAAT-------TATTTGTATCTATT--------- ---TCACAATGAGTCTAGT-------ACTGTCATCACTACACAGTTACATATTTTTTTCCCTTGTGATGATAACTTTT-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AAGATAAACTCTCTTAGCAACTTTCAAATAGGCAATATAGTATTCTTAACTATAGTTGCCA TGCTG-TACATG-----------TATCCTTTCTTTCT---AACAGTGT-TTAGCCAGTGAGGGTCA--ACAACTTATTAA GGGTGTTCTGAGT >Equus_caballus GTTAAATGTTGAGAG-AAAACTACAAATAATAATAA-------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------CTTTAGCT TT-----GAATAGAT----------------------------------------TTGGA--TTTTT-----TTATTTGA GGTATAGTTGACACATAACA----TATTAGTTTCAGGTGCACAACATCATAATTTGATATTTGTATATATTTTGAAATGG TCACCACAATAAGTCT-GTTGAC--ATCTGTCACTATA-CATAGTTGCAAA-TTTTTTTTCTTGTGATAAGAACTTTT-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AAGATCTATTCTCCTGGCAACTTTCAAAAATTCAGCAGAGTATTATTAAC-ATAG----CA TGCTA-TACACG-----------TATCCTTTCTTTCC---AACAGTAT-TTGACCATTCAGGGTCA--ACAACTTATTAA GGATATTCTGAGT >Ceratotherium_simum ATTAAATCTTGGGAG-AAAACTATCAATAATAATAA-------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------CTTGAGTT TT-----GAAAGAAT---TACCT----TTTCT--------TTTTTTCTTTTAGAGTTGGA--TTTTT-----TTATTTGA GGTATAATTG--ACATGACA----TTTTAGTTTCAGGTGTACAACATACTAATTTGATATTTGTATGTATTTTGAAATGG TCACCACAATAAGTCTAGTTAAC--ATCCATCACCATA-CATAGTTACAAATTTTTTTTTCTTATGATGAGAACTTTT-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AAGATCTACTCTCTTAGCAACTTTCAAATATGCCATACAATATTATTAACCACTGTCACCA TGCTA-TACATG-----------TATCCTTTCTTTCT---AATAGTAT-TTAACCGTTCAGGGTCA--ACAAC---TTAA GGATATTCTGAGT >Myotis_myotis AGTAAATGTTAAGAA-AAAACAACCAATAATAATAACTCT---------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------CCTTCTGCT TT-----GAAAGAAT---TAGCC----TTTCT--------CTT--TTTTTTAGAGTTGAA--TTTT------TTAATTGA GGTATAATCGACCTATCACA------TTAGTTTCAGGTATACAACATAATGGTTTGCTACTTGTATATACTGTGAAATGG TCATCACAGTAAGTCTAGTTAAC--ATCTGTCAGCATA-CATAGTTAAAAA---TTATTTATTGTGATGAGAACTTCT-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AAAATAGACTCTCTTAGCAGCTTTCAAATATGCAACCCAGTATTATTAACTATAGTCACCA GGCTGTTACATG-----------TACCC----TTTCT---AACAATAT-TTAACCATTCAGGGTCA--AAACC----TAA GGACATTCTGAGT >Rhinolophus_ferrumequinum ATCCAATGTTAGAAG-AAAACTACCAAAAATAGTAA-------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------CTTTGGTT TTGATTTGAAAGAAT---TACCC----TTTCT---TTCTTCTTTTTTTTTTAGAGTTGAA--AAATT-----TTAATTGA GGTATAATTGACATATAACA------TTAGTTTCAGGTATACAACAT-----------ATTTGTATATATT--------G TCACCACAATAAGTCTAGTTAAC--ATCTGTCACCATA-C--AGTTACAA---TTTTTTTCTTGTGATGAGAACTTTT-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AAAATCTACTCT--TAGCAACTTTCAAATATGCAACACACTATAATTAACTAT--TCGCTA TGCTGTTACATG-----------TATCC----TTTCT---AACAGTAT-TTAACCA-TCAGGGTCA--ACAATTTATTAA GGATATT--GAGT >Sus_scrofa ATTCGATGTTGGGAG-AAAACTACCAATTACTA----------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------CTTTGGAT T------GAAAGAAT---TACCC----TTACT------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------AACAGTTTTTAAATCATTAAGAATCA--ACAACTTATTAA GGACATTCTGAAT >Tursiops_truncatus ATTAAATGTTGGGAG-AAAACTACCAATAATAA----------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------CTTTGGTT TT-----GAAAGAAT---TACCC----TTTCT------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------AGCAGTAT-TTAACCACTATCGGTCA--ACAACTTGTTAA AGACATTCTGAGT >Condylura_cristata AATAAATGT---GAC-AAAACTGCTCACAATAGCAA-------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------CTTTGCTT CT-----GAAAGAAT---TACC--------CT------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------AACAGTAT-TAAACTGTTTGGGGTCA--ACGATTTATGAA GGATATTCTGAAT >Solenodon_paradoxus ATTAAATTT---TGG-GGGAAAAATTAC--CAATAA-------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------CTTTGATT GT-----AAAAGAAT---TACT--------CT------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------AACAGTAT-TAAATATTTATGGGCAATGACATATTATTAA GAAAATTCTGAGT >Galeopterus_variegatus ATTAAATGTTG-GAG-AAAATTACCAATTATAATAA-------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------CTTTGGTT TC-----AAAAGAAT---TACCCTTTCTTTCT------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------AACAGTAA-TTAACCA-TCAGGGTCA--ACAACTTATTAA GAATATTATGCGT Dog350_LINE >L1_CARN7_3END -------------------------------------------------------------------------------G TGGTGATCACTTCACAATGTATACAAA-TGTCGAATCACTATGTTGTACACCTGAAAC-TAATATAACAT--TGTATGTC AATTATACT--------------------------------------------CAAATAAAAAAA--------------- -------------------------------------------------------------------------------- ---------? >Canis_familiaris TTTTGCAAATGGCTAA-AAGCGAGGAGGGAAAAAAGACAT---ACCATTTTAAG---ATATAC--------ACACA---- ----------------------------TATCAAATCATTATGTTGTATACCTGAATC-TA-------------TATGTC ATTTACACTTCA---------------ATTAAAAACAAGGTAACCTCACCAGGCAAACAAAAAC---------------- -AGATATACATGTGTAAAA----TTCATTTTATATATTTGTATCAACAATAATAACTA--TAGTATTGGT---------- -----GGGGA >Felis_catus TTTTGCAAATGGCTAA-AAGTGGGG--GGGGAAAAGACATTACACCATTTTAAG---ATGCAC----ACACACAAA---- ----------------------------CAGCAAATCATTATTTTGTATAACTGAAAC-TC-------------TATGTC AATTATACCTCG--------------------GAAAAAAGTATTGTTACCAGGCAAACAC-------------------- -AAATATATATGAATAAAA----TTCATTGTATATATCTATATCAATAATAACAATAG--TATTGGTGGT---------- -----AGTGA >Manis_pentadactyla TTTTGCAAATGGCTAA-AAGTGGGGGAGGGGGGAAGACATTACACCATTTTAAG---ATATACATATATATATCTA---- ------ATATATACATACATACACAAA-CATTGAATCATTATGTTGTACACGTGAAAC-TAATAAAATGCTGTATATGTC AATTATACCTCA---------------ATTTAAAAAAATGCATTCTGATGGGGCTAACAAAAAAAGATAT---------- -ATACACACATACATATAAT---TTCATTTTACACATCTATATCAGC-ATGACAATAA--TAGTGCTACT---------- -----GGAGG >Sus_scrofa TTTTGCAAATGGCTAA-AAGTGGGGA-GAAAAAAAGACATTACACCATTTTAAG---ATATATATATACACACACA---- ---------------------CACAGAGTATCAAAACATTATGTTATACACCTTAAACTTAATACAATGT--TACATATC AATCACACTTCA----------ATATCTTTT------AAGTATCCTCTCCAAGCAAACAAACAA---------------- -AAATACACACACAT--------TTCATTTTGTACATCTGTATCAACAACAACAATGG--TAGAACTGATGGTAGT---- -----GGCAG >Bos_taurus TTTTGCAAATGGCTAA-AAGTGGGG--GGGGAAAAGACATTGTATCATT--------ATATACATACACATAAG------ ----------------------------TATTCAATC--TATATTGTACACCTGAAAC-TAATACAATGT--TAAATGTC AATTACACTTCA---------------GTTTAAAAGAAAAAATCCTCTCAAGGCAAAGAAACAAAATC------------ -AGATACATACATTTACAA----TTCATTTTGTATATCTATATCAACAATACTAGTAG--TAATATTGGCAGTGGT---- -----GGTGA >Equus_caballus TTTTGCAAATAGCTAA-AAGTGGGGT-GAAAAAAAGATATTACACCATTTTAAG---ATACACATATACACACAAA---- ----------------------------TATCAAATCATTATGTTGTATACCTAAAAC-TAATATAATGT--TACATGTC AATTGTACCTCA--------------ATTTTTTTAAAAAGTATTCTCTTGAGACAAACAA-------------------- -AGATATATATATATAAAA----TTCACTTTATACATCTATATCAACAACAACAATAA--TAACAGTAGTAGTAGTACTG GTAGTGGTGG >Ceratotherium_simum TTTTGCAAATGGCTAA-AAGTGGGG--TGAAAAAAGACATTATACCATTTTAAG---ATACATATATATATATATA---- ---------TATATACACACACACACA-TATCAAATCATTATGTTGTATACCTGAAAC-TAAGATAATGT--TATATGTT GATTATTCCTCA--------------ATTTTTAAAAAACGTATTCTCTTGAGGCAA------------------------ -AGATATAGATTAAAAAAA----TTCACTTTATACATCTATATCAACAACAACAACAA--TAATAGTAGTAGTATTGGT- -----GGTGG >Myotis_myotis TTTTGCAAATGGCTAA-AAGTGGGGGTGGGGAGAAGACATTACATCATTTCAAA---ATATATAAATACATACCCA---- ---------------CACATACACACA-CATCAAATCATTAT-CTGTACACCTAAAAC-TAATCAAATGT--TGTATGTC AATTATACTTCAAAATATTTTCTTAATTTTTCAAATAAAGTATCCTTCTGAGGCAAACAAAGAT---------------- -ATATATATATATATAAAA----TTCATTTTATGCATCTATA--AACAATAACAGTAA--TAACAGCAGACTT------- -----GGTGG >Rousettus_aegyptiacus TTTTGCAAATGGCTAA-AAGTGGG---AGAAAAAGGATATTACACCATTTCAAG---GTACATGTATATGCACACA---- -----------------------CAAA-TATTAAATC---ATACTGTATATCTAAAAT-TA--------------ATGTC AATTATACTTCA------------ATTTTTTTAAAAAAAGTATCCTCTTGAGGCAGAGAATGATGTATATATATACAT-- -ATATACATATATATATAA----TTCATTTTATACATCCATATCAACAATA-TAATAA--GAGAACT------------- -----GGTGA >Condylura_cristata TTTTGCAAATGGCTAATAAGGGAGGAGGAGGGAAAGATATTCCACCATTTAAAC-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -ACACACACATATATGCATC---ATCATTATATACAACTGTAATGACAACAACAACAAAGTAGTATTGGT---------- -----GGTAG >Erinaceus_europaeus TTTTGCAGATGGCTA--TATTG-----GGTGGGAAGACATTAAATCACATTAAG-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -AGATAT----ACACAAAAG---TTCATTTTATACATCGACAATAACAA----AGAAG--TAGAATTCAG---------- -----GGTAT >Homo_sapiens TTTTACAAATAGCTAA-ATGTGGG---AGAGAAACAGTATAATAATATTT-AAG-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -ATATTA----ATATAAAAA---TTAATTTTATACATCTATATCAACAACAATAACAG--TAGCAGTAGG---------- -----GACAG Dog352_LINE >L1MA9_3END -------------------------------------------------------------------------------- TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------TAAGGTGTACAACGTGATGTTTTGATATACGTATACATTGTGAAATGATT ACCACAA-TCAAGCTAATTAACATATCCATCACCTCACATAGT-TACCATTTTTTTGTGTGTGGTGAGAACACTTAAGAT CTACTCTCTTAGCAAATTTCAA---------------------------------------------------------- --------------------------- >Canis_familiaris TTGCACATGAGAAAAGTAAGGCTTAGAGAGTTTAA--GTCACTAATTTTAGC---AGTATAACTTGTGGTCTT---TTT- TTCCTCTAGTTTTATTGAGAAATAATTGACATGT-ATCACTGTATAAGTT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------TAAGGTATACAGTATGATGGCTTGATTTAC--ATGAATTGTGAAATGACT ACCACAA-TAGGCTTAGCTAAT--ATCCATCACCTCTTATAGA---TAAT-AAAAAGAAAGGGAAAA-------AAATGT CCCTTTGTGATACA-----------TACATAGCTTGTCTTCTT---AAACAACATGC-----TGTAACAATGTGGGATTT TCCT------CAATGTAAGAGTTCCTT >Ailuropoda_melanoleuca TTGCAAATGAGGAATGTAAGCCTTGGAGGGTTTAAGTGTCACTACTTTTAAC---AGTATAACCTGTGGTCTT---TTTT CCTCCCCAGTTTTACCGAGAAATAATTGACATAT-ATCGCTGTATAAGTTTAAAGTGTACATGGGGCGCCTGGGTGGGTC AGTCATTAGGCGTCTGCCTTCGGCTCAGGGCGTGATCCCGGCATTATGGGATCGAGCCCCACATCAGGCTCCTCCGCTGG GAGCCTGCTTCCTCCTCTCCCACTCCCCCTGCTGTGTTCCCTCTCTCGCTGGCTGTCTCTCTCTGTCAAATAAATAAATA AAATCTTTATTTAAAAAATATATAAATAAATAAAGTGTACAGCATGATGGTTTGATTTAC--ATGAGTTGTGAAATGACT CCCACAA-TAGGTTTAGCTAAC--ATCCATCATCGAATATAGATTTTAAA-AAAAAGAAAAGAAAAAAC-----AAATGT CCCTTTGTGA---------------TGCGTAGCTTGTCTTCTG---AAACAACGTAT-----TACAGCAATGTGGGATTT TCTT------CAGTGTGAGAATTCCTT >Manis_pentadactyla TTTCACATGAGGAAAATAAGACTTGGAGAGCCTAA--GTCTGTACTTTTAAC---TACATATCTTGTGGGATA---T--- TTTACTCAGGTTTATTGAAAAATAATTGAC-----ATCACTGTACAAGTC------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------TGA---CTTCAGCCTGATGGTTTGATTTAT--ACATATTGTGAAATGAAT AGCACAATTAGATTTAGTTAAC--ATCCATTATCTCATATAGA-TACAAT-AAAAATAAAAGGAAAA-------AATATT CTCTTTGTGA---------------TGCATAACTTGTGTTCTT---AAGCAACACGC-----TGTAACCATGTGGTATTT TCCT------CAGTGTGAGTGTTGCTT >Sus_scrofa TTGCACGTGAAGAAAGAAAGTCTTAGGAAGCTTAA--GTCATTGCTTTTAAC---TGGCTAAGTTGTGTTCTT---T--- TTTTCCCAATTTTATTGAGAAATAATTGACGT---ATTATTATACAATTT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------TAA---------------GGTTTGATTTAC--ATATGTTAGGAAATGATT ACCGTAA-TAGATTTAGTTAAG--TTTCATC---TCATTTAGA-CCCAAT-AAAA--------GAAA-------AAAATT CTATTTGTGA---------------CGTCTAACTTGAGTTCTT---AAAC----TGC-----TATAACAATTTCAGTT-- ------------------GAGTTCCCT >Tursiops_truncatus TTATACATGAGGAAAGTAAGTCTTAGAGAACTTAA--GTCATTACTTTTAAC---TCTGTAACTTGGATTCTT------- TTTTCTCAGTTTTATTGAGAAATAACTGACATAT-ATCTTTATGTAAGTT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------TAAGGTGTACATCATGATAGTTTGATTTAC--ATATATTGTGAAATGATC ACCATAA-TAGGTTTAGTTAGC--CTTTAT----TCATTTAAA-CACAAT-AAAA--------GAAA-------AAAATT CTCCTTGTGA---------------TGCCTAACTTGTGTTCTT---AAACAACTTGC-----TATAACAATGTGGGATTT TTTTTCAATGCATTATATGAGTTCCTT >Equus_caballus TTGCACATGAGGAAAGCAGGTCTTGGAGAGCTTAA--GTCATTACTTTGAAC---AGCATAACTTGTATTCTT---TTAC TTGTTCCAGTTTTATTGAGAAATAACTGTCATAC-ATCACTGTATAAGTT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------TAAGGGGTACAGCGTGATGGTTTGATTTAC--ATATATTGTAAAATGATT ACCACAA-TAGGTTTAGTTAAC--ATCCATCATGGCATATAGA-TGCAAC-AAAAAGAAGAGAAAAA--------CGATT CTCCTTGTGG---------------TGCATAATTTGTGTTCTT---AAACAACATGC-----TATAACAATGTGGGATTT TCCT--------GTGTGACAGTTTCTT >Tapirus_indicus TGTCACATGAAGAAAGTAAGTCTTGGAGAGCTTAA--GTCATCACATTTAAC---TGCATAACTTGCA-TCTT---TT-- TTTTTTCAGTTTTATTGAGAAATAATTGACATAC-ATCGCCATATAAGTT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------TAAGGTGTACAGCATGATGGTTTGATTTAC--ATATATTGTGAAATGATT ACCACGA-TAGGTTTTGTTAAC--ATCCATCATCTCATATAGA-TACAAT-AAAAAGACAAGAAAAG-------AAATTT CTCCTTGTGA---------------TGCGTAACTTGTCTTCTT---CAACAACGTGC-----TGTAACAATGTGGGATTT TCCT------CAATGTGAGAGTTCCTT >Myotis_myotis TTGCACATGAGGGAAGTAGGTCTTAGAGATCTTAA--GTCCTTACTTTTAAC---TGCATAACTT-TGTTCTT---T--- TTTTTTGAGTTTTATTGGGAAATAATTGACATAC-ATCACTGTATAAGCT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------TAAGATGTATAACATGATAATTTGATTTAC--ATATATTGTGGAATGATT ACCACAA-TAGGTTTAGTTAAC--ATTCACCATCTCTTACAGC-TACAAGAAAAAAGAAAAAACAAA------------- TCCCTTCTGA---------------TGCATAACTTGTGTTCTT---AAATAACATGCTGTAATATAACAATGTGTGATTT GCCT------CAATGTGAAGGTTTCCT >Rousettus_aegyptiacus TTGCACAAGAGGAGAGTAAATCTTGAAGAGTTTAA--GTCATTATTGTTACG---TGCCCAAATTGCATTCTT------- ------------TATTGAGAAATAATTGACACAC-ATCATTATATAAGTT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------TAAGGTGCACAAAATAATGATTTGATTTAT--ATATATTGTGAAATGATT ACCACAA-TAAGTTTAGTTAAC--ACCTATCATTTCATATAGA-TAAAGT-GAAAAG------AAAA-------AATTTT TTCCTTGTGT---------------TGCATAACTTGTATTCTT---AAATAACATGC-----TGTAACAATGTGGGATTT TCCT------CAATGTGAAAGTTCCCT >Condylura_cristata TGGGGCATGAGGGAAGTAAGTCTTGTAGAACTTAA--ATCTTTACTTTTAAC---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------TGCATGACTTTTTTTCTT---AT----CATGC-----TATAACAATGTGGAATTT TCCT------CAGTGTGAGAGTACCTT >Sorex_araneus TC-CACATGAGGAAACTAAGTATTGGAGAGTATCA--ATCAGGTCTTTGAAC---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------AC--TAACCTGTGTTCTT---AAA---CATGC-----TATATCAAGGTAGGATGT TCAT------TAATATGAGAACTCCTT >Homo_sapiens TTGCACATGAGAAAAGTAAGTCTTGGAGAAGTTAA--GTCATTACTTTTAAC---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------TTTGTAACTTGTATTTCT---AAACAG-ATGC-----TAAAACAATGGAACACTT TCAT------CAATGTGAGAGTGTCTT Dog353_LINE >L1MA9_3END -------------------------------------------------------------------------------- --------CCAGGGGCTGGGGGG--TGGGGGAAATGGGGAGATG----TTGGTCAAAGGGTACA-AAGTTTCAGTTATG- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -CAGGATGAAT-----------------------AAGTT-CTGGAGATC-TAAT----------------GTACAGCATG GTGACTATAGTTAATAATACTGTATTGTA---------TACTTGAAATTTGCTAAGAGAGTAGAT-CTTAAGTGTTCTCA CCACACACAAAAAAA----------------TGGTAACT-ATGTGAGG-TGATGGATATGTTAAT---TAGCTTGATTGT G-GTAATCATTTC---ACAATGTATACGTATATCAAAACATCACGTTGTAC----ACC----TTAAATAT--ATACAATT TTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------- >Canis_familiaris ATAGAAAC--TTTGAATAATGAAAAAGAT--TACAAATTTGAAGTGATGATAAA--------CTCCTAG-GA---TAGCT TTAAT----------CTGATTATAATAAATTCTCTGGAGGAAGG-----TAATCAAAAGGTATA-AAGGTT--------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----ATTAAGT-----------------------AAGTA-CTAGAAATG-GGAT----------------G-ACAGAATG ATGATTGTAGTTAACACA--------------------TATGGGAAAGTTGTT--GAGAATACCT-TCTAAGAATTTTGG TCAC---AAGGGGAAAATTTTTTTTCTTTTTTTGTATCT-TTATGAAA-TGATGG--ATGTTAC----TAAATCTATT-- --ATAATCATTTC---ACAATATAT--GTAAAT--------CATGCTGTAC----ACT----------GT--ATATAG-T TGTGCATATCAATTATTTCTCAATAAAACT----------AGAAAAAAATTCTCTGGTGTCAGACC-CCAGCATTCTCAG GAAACAACAAATTGATTTTATTTATTTACTTTTATTTATTTATGAGAGAGAGAAAGGGACAGTCACATAGGCAGAGGGAG AAGCAGGCTCCCAGTCCTGCCTAACGCAGGACTTGATCCCAGGACTGCAGGATCACGTCCTGAGCCAAAGGCAGACGCTC AACTACTGAACCACCCAGGTGCCCCCAAACTGATTTTAATTATATT >Felis_catus ATAAAAAC--TTTGAATTGTGAAAAAGAC--TACAAATTTGAAGTGACGAGAAAACACAGAACTGATAGTAA---GAACT TTAAT----------TTGATTATAATAAATTCTCTGGAGAAATG-----TGGTCAAAAGGTAAA-AGGCTC--------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -TAAGATAAAT-----------------------AAATG-CTAGGGATG-TAGT----------------GTACATTATG ATGACTGTAGTTAACACTACTATGCGATA---------TATGGCAAGGTTGTT--GAGAGTACAT-TCTAAGAATTTTCA TCAC---AAGGAGAAAATTTTTTTCTCTTCATTGTATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNN---------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------NNNNNNNNNNNNNNNNNNNNNNNN >Manis_javanica ATAAAAAC--TTTGAATAGTGAAAAATACAGTACAGATTTGAG-----GATAAA--ACAGAACTCATGGTAATAATAACT TT-AT----------TTGGTT---ATAAGTTCTCCAGAAGAAGG-----TGGTCAAAAGGTAAA-AACTTCAGTT----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----A-TAATT-----------------------AAATA-CTAGGGATGTAAAT----------------GTGCACCATG ATGAC--TAATTAACATCGCTGTATGGTA---------TATGGAAAA----TT--GAGTGTATAT-CCTAAGAGCTCTCA TCAC---AAGG---AAGTTTTTTCTTTTTATCTGT------------A-TAATGG--ACATTAAC---TAAACCTGTT-- --TTCATCATTTC---ACAACATAT--ATAAGTCAAACCATCATGCTGTACCTTAACC----------TT--ATACAA-T GATGTATGTCAGTTA--TCTTAATAGAACT-TGA------AAAAACAAATTATCTGGTATTGTGTC-CTGACAGTCTCAG AAAA---------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------CTGCAAACTGATTTTAAATATATT >Sus_scrofa ATTAAAAC--TTTGAAAAATGA--AAGGCTATGCAGATTTGAACTGAGGATAAA--ACCTAACTC--AGTAA---TA-TT TTAAT----------CTGATTATAATAAATTCTTTGGAGGAAGG-----TGGTCAAAAGGTATATAAACTTGTAAAGTT- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -TAAGGTAAAT-----------------------AAGTA-TGAGGGATG-TAAT----------------GTACAACATG A-GACTACAGTTAACACTGCTGCATGATA---------AAAAGGAAAATTTTTAAGAAAGTAGGT-CCTTAG--TTCTCA TCAC--AAGGAGGAA-----TTTTTTTTTAATTGTACCT-GTATGAGA-TGATGG--ATGTTAAC---TAAACCTGTT-- --GTAATCATTTC---ACAATGTGT--ATAAAT-----CATCATGATGTTC----ACC----TTAAACTT--ATAAAG-T GACTGTTGTCAATTATTTCTCAGTAAAATTAGGG------AAA---AAATTCTCTGGAACTAGACC-CAGAAATTTTCAG TAAA---------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------TTGCAAATGGATTTTAAATGTATT >Tursiops_truncatus ATAAAAAA----TGAAAAATGA--AAGACTATGCAGATTTGGAC--AGGATAAAACACAGAATTCATAGTAA---TA-TT TTAAT----------CTAATTATAATAAATTCTCTGGAGGAAGG-----TGGTCAAAAGGTATATAAACTTTTTTTAAAA TTATTTTTGGCTGCGTTGGGTCTTCGTTGCTGTGCACGGGCTTTCTCTAGTTGCAGCGAGAGGGGGCTACTCTTCGTTGC AGTACATGGGCTTGTCATTGCGGTGGCTTGTCTTTGTCGTGGAGCACGGGCTCTAGGCATGTGGGCTTCAGTAGTTGCAG CGCATGGGCTCAGTAGTTGTGGCTCGCAGGCTCTAGAGCGCAGGCTCAGTAGTTGTGGTGCACGGGCTTAGTTGCTGCTC CGTGGCATGTGGGATCTTCCAGGACCAGCGCTCAAACCCATGTCCCCTGCACTGGCAGGTAGATTCCCAACCACTGCCCC ACAAGGTAAGTCCCAAAAGGTATATAAACTTTTAAAGTA-CTAGGGATA-TAAT----------------GTACAACATG ATGACTATAGTTAACACTGATGTGTGATA---------AAAAGGAAAATTTTTAATATAGTAGATCCCTTAGAGT--TCG TCACAAAAGGAGGAAGTTTTTTTTCTTTTAATTGTATCT-ATATGAGA-TGATGC--ATGTTAAC---TAAACCTATTGT G-CTAATCATTTC---ACAGTGTAT--GTAAATCAGACCATCATGCTGTGC----ACC----TTACATTT--ATATAA-C AATGTATGTCAATTATTTCCCAATAAAACTGG--------GGGAAAAAAGTATCTGGAACTAAACC-CAAACATTTTCAG GAAA---------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------TGGCAAACTGATTTTAAATATATT >Equus_caballus ATAAAAAC--TTTGAAAAGTGAAAAAGACTATACAGATTTGAAGTGATGATAAA--ACAGAATTCATAGTAA---TAACT TTAAT----------CTGATTGTAATAAATTCTCTGAAGGAAGG-----TGATCAAAAGGTATA-AACTTCTGGCTA--- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -TAAGATAAGT-----------------------ACT------GGGGTG-TAAT----------------GTATAGCATG ATGACTACAGTTAACACTACTGTGTGATA---------TATAAGAAAGTTGTTAAGAGTGTAGAT-GCTAAGAGTTCTCA TCAC-----AAGGAAAATTTTTTTCTTTTCATTGTATCT-ATATGAGATTGATGG--ATGTTAACT-ATAAACCTATTGT G-GTAATCATTTC---ACAGTACAT--GCAAATCAAACCATCATGCTGTAC----ACC----TTAAACTT--ATATAG-T GAT-GATGTCAGTTATTTCTCAATAAAACTGGAAA-----AAAAATAAACTCTCTGGTGTTAGACC-CTGACATTCTCAG GAAA---------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------CTGCAAACTGATTTTAAATATATT >Ceratotherium_simum ATAAAAAC--TTTGAAAAGTGAAGAAGACTATACAGATTTGAAG---TAATAAA--ACAGAATTCATAGTAA---TAACT TTAAT----------CTG--TATAATAAATTCTCTGGAGGAAGG-----TGGTCAGAAGGTATA-AACTTCCAGTTA--- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -TAAGATAAAT-----------------------AAGTA-CGAGGGATG-TAATGTACAGCATCTAGTCCGTACAGCATG ATGACTACAGTTAATACAGCAGTGTTAAC---------TGTAG-AAAATTACTAAGGGAGTAGAT-CCTAACAGTTCTCA TCAG-----AAGGAAAA----TTTCTTTTTATTGTATCT-ATATGAGAGTGATGG--ATGTTAAC---TAAATTTATTGT G-GTAATCATTTC---ACAGTATAT--GTAAATCAAACCATCATGCTATAT----ATC----TTAAACTT--ATACAG-T GAT-TATGTCAATTATTTCTC---AAAACTGGAAA-----AAAAATAAACTCACTAGTGTTGGACC-CTGACATTCTCAG GAAA---------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------CTGCAAACTGATTTTAAATATATT >Myotis_myotis ATAGAAAC--TTTGAATAGTGAAAAACACTATACAGAGTTGAACTGATGATGAAACACAGAACTCATAGTAA---TAATT TTAAT----------TTGACTATAACAAATTCTCTGGAGGAAGGTGATTTGGTCTAAAGGTATA-AACTTCCAGTTA--- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -TAAGATAAAT-----------------------AAGCA-CTAGAGATG-TAAT----------------GTACAGCCTT ATGTCTATACTTAACACTGCTGTATGATA---------TTTAGAAAAGTT-----GAGAGTAAAT-CCTAAGAGGTGTCA TTAC-----AAGGAGAAAATTTTTTTCTTTACTGTACTTAATATGAGA-TGATGG--GTGTTAACTAATAAACCTATTGT G-GTAATCATTTC---ACAGTTTTT--GTAAATCAAATCATCATGCTGTAC----CTC----TAAAACTTTGATACAG-A GGTGTATGTTAATTATTTTTCAATAAAAC-----------AAAAAAGCATTCTCTGATGTTAGATC-CTGACATTCCCAG GAAA---------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------CTGCAAACTG---------ATATT >Rousettus_aegyptiacus ATAAAAAC--TTTGAATTGTGAAAAACA---TACAGATTTAAACTGATGATAAA--ACAGAACTCATAGTAA---TAACT TTAAT----------CTGATTATGATAAAGTCTCTGGAGAACGGTGGTCTGGTCTAAAGGTATA-AATTTCCAGTTA--- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -TAAGATAAAT-----------------------AAGTAGTTAGGGATG-TAAT----------------ATACAACATA AT---TATAGTTAATGCTGCTGTATGATAACACTGCTTTATGATAAAGTT---AAGAGAGTAGGT-ACTAAGAGTTTTCA TCAC------AGGAGA-------CTTTTTTCTTGTATTT-ATATGAGA-TGATGG--GTGTTAAC---TGAAATTATTGT GTTTAAGCATTTTATGACAATATAT--ATAAATCAAACCCTCATGTTGTAC----ATACATGTGAAACTT--ATACA--- AATATATGTCAATTATTTCTTAGTAAAACTGG--------AAAAAAAAATTCTCTGATGTTAGACC-CTGACATTCTCAG GAAA---------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------TTACAGACTG---------GTAAT >Condylura_cristata ATAAAACG--TTTAAAT----------ACTACACAGATTTGAAGCCATAGTAAAACACAGAAGTCACAGTTA---TA-CT TTGAT--------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------AACAGTAAATTCTCTGATATTAGACT-AAGACATTCTTAG GTAA---------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------CTGCAAATTAATTTTAATTATATT >Uropsilus_gracilis ATAAAATT--TTTAAATAGTGAAAAAGACTATACACATTTGAAATGATGATAAA--ACACAACTCATAGTGA---TAACG TTGAT--------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------AATTGTACTTTCTCTGATATTACACT-AGGACATTTTCAG GAAA---------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------CTGCAAACTAATTTTAATTATATT >Galeopterus_variegatus ATAAAAACTATTTGAATAGTGGAAAGGACTATACATGTTTGAAGTAAAGATAAA----ACAACTCATAATGAC-CTGAAT GTGAT--------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------TATAGTAAAT----TGGTGTTAGTCTTTGCTTTTTCTCAT GAAA---------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------CTG--GTCTGATTTTAAATATATT Dog357_LINE >L1_CARN7_3END -------------------------------------------------------------------------------- --------------GAGGGGGGTTGGGGATGGGTGAAATG---------------------------------------- -------------------------------------------------------------------------------- ----------------------------GGTGAAGGGGGTCAAGAGGTACAAACTTCCAGTTATAA---AATAAATAAGT CATGGGGATGTAATGTACAGCATGGNGAATATAGTCAATAATATTGTANTAACNTTGTATG-GTGACAGATGGT-AACTA GACTTATTGTGGTGATCACTTCACAATG-TATACAAA---TGTCGAATCACT-ATGTTGTACACCTGAAACTAATATAA- ----CATTGTATGTCAATTATACTCAAATA--AAAAAA------------------------------------------ -------------------------------------------------------------------- >Canis_familiaris CCTGCAAATGGTGA---AGAACAAG-A--GAAGGAAGAAGGAATCATCTACCTCTC---AGGAAACACTGTC-AGAAAAG GGGAACCAGA-------------------CCTTTGAAAGT---------------------------------------- -------------------------------------------------------------------------------- ----------------------------TGCTTAGAGAGT--AAATCCTTAAAGTTCTCATTGCTA---GGAAAAAAAAT AATAAATT--------------------------------------CTGTGA---TGTGTG-GTGATGGATGTT-AGTTA GACTTACT---CTGCTCATCATTTAATT-TCTACAAA---TACTGAATCATT-AAGCCGGATACCTAAAACTAAGGTAAC TGTTTGTTATATGGCAATTACAGCTAAGTA--CAAAAT-----T---GAGAGGGTTAAAAAAGG---------------- GGGGGGGGGGCAA---GGAGAAGAGAGAAAGAAAGGGCAGGGCAGCCCT--GAGAGAGATAAAGACAC >Felis_catus NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNN----------CTCTTCTCTCTCTCAAAAA---------------------------------------- -------------------------------------------------------------------------------- -------------------------------TAATAAATA--AAACATTAAAAATGTTTAA--------GAAAAAAAATT ----------------------------------------------CTGTAATTATGTGCGGGGGGTGGATATT-AACTA GACGCACC---GTGGTCATCACGTAATA-TATACAGA---TACCGAATCATT-GCGTCATACACCTGACACTAAGGTAA- ----GGTTGTGTGTCAATCCTACCTCTATA--AAAAAT-----T---GAGAGGGTAAAA--------------------- ---GAAAAAACAG---GGAGAAGAGAGAAAGAAAGAGCAGGGCAGCCCCAAGAGAGAGACAAAGACGC >Manis_pentadactyla TCTCCAAGTTGCTGAGAAGAACAAA-T--AAGGGAGAAAGA----ATCTACTTCTC---AAGAAGCACGGTCGAAAAAGT GGGTAGAAGAA-------------TTGTATATTCCAAAGG---------------------------------------- -------------------------------------------------------------------------------- ----------------------------TGTTTACAGAGT--AAATCTGAAAATTTCTCACCACA----CACAAAAAAGT ----------------------------------------------CTGTAACTATATATG-GTGATGGATGTT-AACTG GACTTACT---ATGATCATTTTGAAATGTTATACAAA---TACCGAATCGTT-ATGCTGTACATCTGAAACTAT------ -------------ACAATTATATCTTAATA--AAAAAA---TTA---AAGAGGCTTAAAAAAAAAACACATGGGGCC--- GAGGGAGAAAGGA---AAGGAAAAGAGATAGAA--AGCAGGGAAGCCCC--AGCAGAAACAAAGCCTC >Sus_scrofa TCTACAAATTGTGGGTTAGAACAAA-T--AAAGCAGCAG--------------------AGGAAGAGCTGTC-------- -----------------------------TCTTTGAAAGT---------------------------------------- -------------------------------------------------------------------------------- ----------------------------GGCTAGGAAAGC--AAGTCTTAACAGTGCTCCTCACAAGGGGAAAAAAAAAT ----------------------------------------------GTGTCACTCTTCGGT-GTGAAAAATGTTAAACTA GATTTTTT---GTGATCATTTCATAACG-TATACAAA---TAGTGAAGCTATTATGTCA-ATAGCTGAAGCTAA------ ---------TATGTCAATTACAGCTCAGTACCAAAAAAAAGAAG---AAGAGGGTTAAAAAAAAAAAAAA---------- AAAAGGTGGGGGT---GGGGAAGAGAGAAAGAAAGAGCAG-----------GACAGAAACAAAGCCAT >Bos_taurus CCTGCGAAGTGTGGGTTAAAACAAA-C--AAATGAGAAAGA----ATCTATTTCTC---AGGAAGCACCATC-ACAGAAG GGGAGGAAGGA-------------T----TAGTTGAAAGA---------------------------------------- -------------------------------------------------------------------------------- ----------------------------GGCTAAGAGAGT--AAATTTCAACAGTGCTGAACACAA---G------AAAT ----------------------------------------------GTGTCATTATGCGTG-GTGATGGATGTT-GACTA GATTTATT---GTGGTCATTTCGTAACA-GACACAAA---TATTGAATCGTT-ATGTTGTACACCTGAAGCTGG------ ---------TATGTCAACTACATCCCAACA--AATAAA--AATC---AAGAAGGTAAAAAAAAAAAAAAAAAAAAAGGGT GGGGTGGGAAGCA---CAGGAAGTGAGAAGGAAAATGCAGG----------GACAGAAACAAAGCCAT >Equus_caballus TCTATAAATTGTTGAGAAGAACAAA-T--AAGGGAGAAAGA----ATTTACTTCTC---AAGAAGCACTGTC-AGAAACA GGAAGGAAATA-------------TTATATATTTGAAAGT---------------------------------------- -------------------------------------------------------------------------------- ----------------------------TTCTAGGAGT----AAACCTTAAAAGTTCTCACCACAA---GAAAAAAAATT -----------------------------------------------TGTAGCTGTGTATG-GTGATGGATATT-AATTA GACTTAGT---GTGACCATTTCATGATA-TATACAAA---TATCGAATCATT-ATGTTGTACACTTGAAACTAATATAA- ----TGTTATATGTCAA--ATATCTCAATA--AAAAATTGTTTT---AAGGGGG-------------------------- GAGGGAGGAAGCA---AAGAAAGAGAGAAAGAGTGAGCAGGGCAGCGCC-GGACAGAAACAAAGACAC >Tapirus_indicus CCTGTAAATTGTTGAGAAGAACAAA-T--AAGGGAGAAAGA----ATCTAATTCTC---AAGAAGCACTGTC-AAAAATG GGAAGGAAGGA-------------TTGTATATTTGTAAAT---------------------------------------- -------------------------------------------------------------------------------- ----------------------------TGCTAGGAGT----AAATCTTAAAAGTTCTCATCACAA---GAAAAAAAATT -----------------------------------------------TGTAACTATGTATA-GTGATGGATATC-AACTA GACTTATT---GCAATCATTTCAAAATA-TATACAAA---TATTGAATCATT-ATGTTGTCTACCTGAAACGAATACAA- ----TGTTATATGTCAAGTATA--TCAATA---AAAATTCTTTT---AA------------------------------- -----------------AGAAAGAGAGAAAGAAAGAGCAGTGCAGCCCC-AGACAGAAACAAAGACAC >Myotis_myotis CCTGCAAACTGTTA---AGAACAAA-T--AAGACAGAAAGG----ATCTACTTCTT---AAGAAGCACTGTC-AAAAATG GGAA-GAAGCA-------------TTATGTATTTGAAAGTACAGTGGGGCCTTGACTTATGAGTGACCCAGCTAACGAGT TTTTTGAGATACCAGCTGCATTGAGTTGACAGAGTAATTTGGGTTAACGAGCTCCTTAACGAGCTCGGTCTCGGAACGAA TTAAACTGGTAAGTCAAGGCCCCACTGTAGATAAGAGAGC--AAATCTTAAAAGTCCTCATCACAA---G-AAAAAAGTT ----------------------------------------------TTGTAACTGTATGGG-ATGATGTATGTT-AACTA GACTTATTATGGTGATCATTTAGCAATA-TACACAAAGATCATCAGATCATT-ATGCTGTACACCTGAAACTAA------ -------AATATGTCAATTATACCTCAATA--AAAAAA---AAT---AAGAGTGGTAAA--------------------- ATGGGGGTGTGGG---GAGGAAGAGAGAAAGAAAGAGCAGGGTAGCCCT-GGAGAGAAACAAAGACAC >Rousettus_aegyptiacus NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNN-------------NNNNNNNNNNNNNNNN---------------------------------------- -------------------------------------------------------------------------------- ----------------------------NNNNNNNNNNNNNNNNNNNNNNNNNGTCCTCATCACAA---GAAAAAAAAAA ----------------------------------------------TTGTAACTGTGTGTG------------------- -----------GTGATCATTTCTCAATA-CATGGAAA-------GAGTGATTCATGTTGCATACCTGAAACTAATATAA- ----TGTTCTATTTCAATTGTGCCTCAATG--AAAAGA---ATT---AAGAGGGTTTAAAAAAGGGGGTTG--------- GGGGAGAAGAGAA---AAGGAAGAGAGAAAGAA--AGCAGGGCAGCCCC-AGACAGAAACAAAGACAC >Condylura_cristata TTTGCAAGTTGTTGAGAAGAAAAAA-C--AAAGGAGAATGA----ACCTACCTCTC---AAGAAACAAGGTC-CAAAAAA GGGAGAGGAAG--------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------GAAGAGGG-------AAAGAGCAAAGCAACCAA--GATAGAAACAAAGACAT >Sorex_araneus GTTGC-CATCGTGGGGAAGAAGAGACAAGAGAAAGAGCCG-----ATTTTTCCCAC---CAGATGCACTGTC-CGACACC AGGGAGACGGA--------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------AAGGAGAG---ACAGAGAGAGCAG--CAGCCCC--AAGAGAAACAAAGACAC >Homo_sapiens TTTGCAAATTGTTAAGAAGAAAAAA-ATGAAAGGGAAAGGA----ATGCAAGCATC---AAGAAGCACTGTC-AAAAAGG GGGAGGAAGGA--------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------AAGGAAGGAAGGGAAAAAGAGTAGAGCAGCCTT-GGATAGAAACAAAGCCAT Dog358_LINE >L1MA9_3END -------------------------------------------------------------------------------- --TGTATACTTGAAATTTGCTAAGAGAG----TAGATCTTAAGTG---TTCTCACCACACACAAAAAAA---TGGTAACT ATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTG TA-CACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA-------------------- ---------------------------------------------------------- >Canis_familiaris AA-AAAC---AGTGAAATAATTTTCA-CAATTAATTTACATGAAGTACAGG---ATGT---AAAACGAAACAC-----A- --------TTTGAAAGTTGCTAAGAGAA----TA-ATCTTAAAAG---TTCTCATTACGAGAAACAATT-TTTCATAACT TTGCAC-GTGCTGG--ATGTTAACTAGACGTATCATGGAAATCATTGTGTAATATGTACAAAT--CAGATCACGACATTG GA-CACCTGAAGCCAGCACAA-TGTTATATGTCAATTATGCCTCAAT-----------AAAATAAAAT---AAAACCAAA GGC-A---GAATAAAGAAGGTTAAAATCTGTCTTATTTATGTTGGTTTGAGCTTCATT >Felis_catus AA-AAAC-----TGAAATAATTTTCATTGACTAACCTGTGTAAAGTACAGG---ATAT---AAAACCAAAGAC-----A- --------TTTGAAAGTTGCTAACAGAA----TAAATCTTCACAT---TTCTCATTATAAGGAAAAA-----TTTTGACT ATGTACGGTGACGG--ATGTTATCTAGACTTATCATGGTGACCATTTTGTAGTATGTACGAACGTCAGATCACGACATTG TA-TCCCTGAAACTAATACAA-TGTTATATGTCATTTACACCTCAAT--------TAAAAAATAAAAT---AAACCCAAA GAC-A---GGGTAAAGGAGGTTAAAATGTGTCTTGTTTGTATTGGTTTGAACTTCATC >Manis_pentadactyla AA--AGC---CATGAAGTGATTTTCATTGAATAGTCTATGAAAAGTATAGG---ATAT---AAAACTGAAGAC-----A- --------TTTGAAAGTTGCTAAGAG------TAGATCTTAAAAG---TTCTGATCACAAGAAGAAAAA---TTGTAACA GTGT--GGTGAGCC--GTGTTACCTAGACTTACTGT-ATGATCATTTTGTAATATATACACATGTTGAATTATGACAATG TA-TACCTGAA-----TACAA-TGCTATATGCCACTTATACCTCAAT--AAAAGAAATAAAATAAAAT---AGAACCAGA GAC-A---GAATAAAAGAGGTTACAAGGGG--CTGCTTACTTTGGTTTGGGCTTCATC >Sus_scrofa AA-AAAC---AGTGAAATAATTTTCATTGAAGCGTTTATGTAAAGTATGGG---AGAG---AAACCCAAAATTTGCTAA- --------GTTGTAAGTTGCTAAGAGAG----CAAATCTTAGACGTTCTTCTCATCACGAGAAAAACAA-TCTTGTCACC GTGTATGGTGACAG--ATGTTAACTACACTCCTTGTCGTGATTATCTTGCAATACATACAACTATCAGATCATCCTGTTG TA-CACCTGAAACTAATACCA-TGTAATATCTTAATTATACCTCAAT------------TTACAAAAT---AAAATCAAA GAC-C---GAGTAAAGGAAGATAAAATGTGTCACGCTTACATTGGTTTGGGCTTCATC >Bos_taurus AA-AACC---AGTGAGATAAGTTTCATCGAATAGTTTATGTAAAATAT--------AC---AAAACCAAAGAC-----A- --------CTTGAAAATTGCTAAGAGAGCAAATAAATCTTAAAAG---TTCTCATCACAAGAAAAAAAAGTCTTGTAACT ATGTATGGTGACAG--ATGTTAACTAGACTTACTGCAGTGATCATTTTATAATATATACAAATATCAAATCATCACATTG TACCCCCTGAAACTAGTATCA-TGTAACATGTCAATTAATCCTAAATAAAGAATAAATTAAATTAAAT---AAATTCAAA GACAA---GAGTCAAGGAGGTT-TAACGTGTCTTGTTTACATCAGTTTGGGCTTCACC >Equus_caballus AA-AAAC---AGTGAAATAATTTTCATTGAATAGTCTGTGGAAAGAATAGG---ATAT---AAAACTAAAGAC-----A- --------TTTGAAAGTTGCTAAGAAAG----TAAATCTTAAAAG---TTCTCAACACAGGAAAAGCAT---TTGTAACT ATGTATAGTAATAG--ATGTTAACTGAACTTATTGTGGTGACCATTTTGTAATATATACACATATCGAATCATTACTTTG TA-CACCTGAAATTACTACAG-TGTTATGTATCAATTAGACCTCAAT-------AAATAAAATAAAAT---AAAACCAAA GAC-A---GAGTAACGGAGGTTAAAAC--GTTTTGCTTACATTCGTTTGGGCTTTCTC >Tapirus_indicus AA-AAAC---AGTGAAATAATTTTCATTGAATAATCTATGGAAGGAACAGA---ATAT---AAAACCAAAGAC-----A- --------TTTGAAGGTTGCTAAGAAAG----TAAGTCTTAAAAG---TTCTCATCATAAGAAAAAAAA-TTTTGTAACT ATGTACAGTGACAG--ATATTAACTAGACTTATTGTGGTGACCATTTTGTAATATACACACATATCAAATCATCACACTG TA-CACCTGAAACTAATACAA-TGTTATATGTCAATTATACCTCAAT--AAATAAAATAAAATTAAAT---AAAAATAAA GAC-A---GAGTAAAGGAGATTAAAACATGTTTTGTTTACATTGGTTTGGGCTTCCTC >Myotis_myotis AA-TAAT---GGTGAAATAATTTTCAATGGATAGACTATGTCAAGTACAGG---ATAG---AAAATGAAAGAC-----A- --------TTGGAAAGTT---AAGACAG----TAAATCTTAAAAG---TTCTCATTACAAGAGAAAAAAATTTTGTAACT ATGTATGGTGACGA--ATGTTAACTGCACTTATTAT---GATCATTTTGTAATATATACAAATACTGAATCATTATGTTG TA-CACCTGATATGAATACAA-TGTTATATATCAATTATACCTCAAT------TAAAAATAATAAAAT---AAAATAAAG AAAGA---GAGTAAAGGAGGTTAAAACATGTCTTGTTTACATTAGTTTGGGCTTCACC >Rousettus_aegyptiacus AA-TAAT---GGTGAAATAATTTTCATTGAACAGTCTATGTAAAGTACAGG---ATAT---AAAACCAAAAAC-----A- --------TTAGAAAGTTGCTAAGAG------TAAATCT--AAAG---TTCTCAT---AAGAGAAGAAAATTTTGCAAGT ATATATGGTGAAGG--ATGTTAACTAGTCTTATTGT---GAAAATTTTGTAGTATATACAAATACTGAATCATTATGCTG TA-CACCTGAAACTAATACGA-TGTTATATATCAATTATATCTCAAT-----TATAAAAAAGTAAAAC---AAAATCAAA GAT-A-----ATAAAGGAGGTTAAAACATATCTTGTTTACATTAGGTGGAGCTTCATC >Condylura_cristata AAACAGC---AATGACATAATTTTCATTGAGGAGTCTATGCAAAGAACAGGAGGATAT---AAACCTAAAGAC-----A- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------GAGTAA-AGAAGTTAAAACAT---TGGTTTACATTGGTTTGGTCTTCATC >Sorex_araneus AAAAAGC---AGTAAAATAATTTTC-----------TGTGCAAA-TATAGG---ATAT---AAAATCCAAGCC-----C- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------AAATCAATGATACTAAAATA---CTTGTTTACATTGTTCTAAGTTTCATC >Cavia_porcellus AA-AATCCTTAGTGAAATAATTTTCATTGAGCA-TTTATATAAAGTCCAGG---GTAG---AAAACCAAAGAC-----A- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------GAAGAAAGGAGACTAAAATACACTCTGCTTACATTGGTTTAGGCTTTATA Dog359_LINE >L1MA9_3END -------------------------------------------------------------------------ATATCTG CACTCCCATGTTCATTGCAGCATTATTCACAATAGCCAAGATATGGAANCAACCTAAGTGT--------CCATCGACGGA TGAATGGATAAAGAAAATGTG----------------------------------------------------------- --GTATATATACACA-ATG-GAATATTATTCAGCCTTAAAAAAGAA-GGAAATCCTGCCATTTGTGACAACATGGA---T GAACC----TGGAGGACATTATGCTAAGTGAAATAAGCCAGGC---ACAGAAAGACAAATACTG-CATGATCTCACTTAT ATGTGGAATCTA-AAAAAGTCAAACTCATAGAAGCAGAGAGTAGAATGGTGGTTGCCAGGGGCTGGGGGGTG-------- -GGGGAAATGGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGTAC AGC--------ATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAG--------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------TAGAT CTTAAG-------------------------------------------------------------------------- -----------TG-----TTCTCACCACACACAAAAAAA---TGGTAACTATGTGAGGT-GATGGATATGTTAATTAGCT TGATTGTGGTAAT-CATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATT TGTCAATTATACCTCAATAAAGCTGGAAAAA------------------------------------------------- ------------------------------------ >Canis_familiaris AGTTATTCTAGGCATTTCAAGCAGAGAGAATTCAACATAAGGAATAAATTTTA---AAAAACATATTGGA---------- -TGTTGGATGTTCATTGCAGCATTATTCACAAAAGCCATTGCATGGAAACAACTT--GTGT--------CCATTCATAGA TGAATGGACAAAGAAAATGTGACACATATGCATATATATATATATTATGTAGGTATATACAAATGTAAATATGTGTGTAT ACACACACATATGCA-ATA-GAATATTATTCAGCTGTAAAAAAGAG-GCAAATCCTGTCATTTGCAATAACATGGA---T GGGACC---TTGAAAATGTTATATTGAAGGAAATAAGTCAAAC---AGATAAAGACAAATATGGTTATGATCTCACTTAT CCATGGAATCTA-AATAAACCAAAATCATAGATACAGAGGACAGATTGGTGGTTGCCAGAGGCTGGGGG-TGTGTGGGGG CAGGTTAAATGCATGAAGGTGGTCAAAAGGTACAAACTTCCAATAAT--AAGGCAAATAATTTCTGGGGGTATAATGTAC AGA--------ATAGTGACTATAGTTAGTGATACTCTATCGTATATTTGCAAAATGCCAAGAGAA--------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------TAAAT CTTAAA-------------------------------------------------------------------------- -----------AG-----TTCCCATCACAAGAAAA-ACACGTTTACAACTATGTGAGGT-GATTG--TCGTTAACTGAAC TCACTGAGAGGAT-CAATTCACGGTATATACCTATATCAA---ATTCTGTTGTGCATTTTGGACTAATACAA-TGTTCCC TGTGAATTATATCTCACTAAAACTGGAGG--------------GAAA-TAT-ATTGGG---AGGATCAAAATAGCAAAAG AGAAAA-GCAAGTG-TTATTTATGA-TTGGAAACTG >Felis_catus AGTTACTCTAGGCATTTCAAGCAGAGAGAATTCAACACAGGAAATAAG--TTA---AAAGACATATTGGA---------- --------TGTTCATTGCAACATTATTTACAGAAGCCAATGCAT-GAAACAACCTAAGTGT--------CCATTCATAGA TGAATTGACAAAGAAAATGTGATATGCCTGTAT-------TC---TATATGTGTGCACATATGTGTATATGTGTGTATAC ATAGACACATACACA-ATG-AAATATTATTCAGCTGTGTAAAAGAA-GGAAATCCTGTCATTTGTAACAACATGGA---T GGGTC----TTGAAGGCATTTTACTGAAGGACATAAGGCAAAC---AGAAAAAGACAAAAGAGGTTATGATCTCACTTGT ATGTGGAATCTG-AATAAACCAAAATCATAGATATAGAAGACAGATTGGTGATAGCCAGAGGTGGGGGA-AGAGAAGG-- -AAGTAAAATGGGTGAAGGTGGTCAAAAGGTACAGACTTCCAGTTAT--AAGATAAATAAGTCCTGGGGATGTAACGTAC ATCCCCTGTCAGTGGGGATACAATACAGTGATGCTGTATTGTATATTTACAAAATGCCAAGAGAG--------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------CAAAT CTTAAA-------------------------------------------------------------------------- -----------AG-----TTCTCATCAGAAGAAAACAAACTTTTGTAACTATGCAAGGT-GATTG--TTGTTAACTAAAC TTATTGTGATGAT-CATTTCATGATATATGCATAT--------ATTATATTGCGCATTTTAGACTAATACAG-TGTTCCC TGTTAATTATTTGTCACTAAAACTGGGGGA-------------AATA-TAT-ATTGGG---AGGATCAAAAGAGCAAAAG AGAAAA-GCAAGTGGTTATTCAAAA-TTGGGGACTG >Manis_pentadactyla ACTTGTTCTAGGCATTTCAAGAAGAGACGATTGAACATGGGAAAGAAG---TA---AAAAGCATATTGGG---------- --------TGTACATTGCAGCATTATTTATAACAGTCAAGACATGGAAACAATTTAAATGT--------CTGTCAGTGGG TGAATGGATAAAGAGAAGGTGATATATATATATATATACGTA---TGTGTGTGTATACATACATACATATATATATGTAT GTATACACACACATA-ATG-AAATGTTATTCAGTCATATAGAA----GGAAATCCTGCCATTTGCAACAACACAGA---T GGGGC----TTGAGAACACTATGCTAAATAAAATGAGTCAAAA---AGTAAAAGACAAATATTG-TATGACCTCACTTAT AGGTGGAATCAG-AACAAATCAAAATAATAAATACAGAGGACAGATTGGCATCTGCCAGAGGTGGGGGG-AGGATGGT-- -GGGCAAAATGGGAGAAGGTGGTCAAAAGGTACAAATTTCCAGTTGT--AAG----ATAAATCCTGGGGATTTAGTGTGT AAC--------ATGTTGACTGTAATTAGCAATGCTATATTGTGTATTTGCACATAGCTAAGAGAG--------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------TAGAT CTTAAA-------------------------------------------------------------------------- -----------AG-----TTCTCATCATAAAACAA-A----TTTGTAACTATGTGATGTGGATGG--ATGCTAACTAAAT TTATTGTGAT----CATTTCCCAATATACAC--ATATCAA---ATCATGTTGTACACTTTGGACTAATAAAA-------- TATCAATTATATCTCAGTAAGACTGGGAAAAAGAGAAAA----AATATTAT-GTTGGA---AGGATCAAAAT-------- --------CAAGTGGTTTCTCCAAA-TTGGGAGTTT >Sus_scrofa AATTATTCCAGGTCTTTCAAGCAGAGAGAATCCAACACAGGAAATAAG--CTA---AAAACTATGTTGGA---------- --------TTCTCATTGCAGTATTATTTACAATAGCCAGGATATGGAACCAACCCA-GTGT--------TCATCAATGGA CAAATGGATCAAGAAGATGTGAGATAT----------------------------------------------------- ACATATATGTATAAA-ATGAGAATATTATTTAGCCATAAAAGAA---GGAAATCCTGCCATTTA-AAAAACATGGA---T GGATTT---TTGAGGGCATTATGCTGAATGAAATAAGTCAAAC---AGAAAAAGCCAAATGCTG-TATGATCTTATTTGT ATGTTGAATCTGAAAAAAACTAAAATCATAGATACAGAGAATAGAA-AATGCTCACCAGAGGTGTGGGTGGGGGT----- -GGGCAAAATGGGTGAAAGTGGTCCAAA-------ACTTTCAGTTAT--TAGATAAATTAGTAATAGGGATGTGATGT-C AGC----------------------------------ATTGCAAAATTGCAAATTGCTGAGCGGGGATAGCTTAGTTTTT TTTTCTTTCTTTTTTTTCTAGGTCCACTCCTGCAGCATATGGAGGTTCCCAGGCTAGGGGTCTAATTGGAGCTGTAGCCA CTGGCCTACGCCAGAGCCACAGCAACTTGGGATCTGAGCCACGTTTGTGACCTACACCACAGCTCACGGCAACGCCAGAT CCTTAACCTACTGAGAAAGGCCAGGGATTGAACCTGGAGCCTCATAGTTCCTAGTCAGATTCATTAACCATTGAGCCACG ATGGGAACTCCAGCTTAGTTCTTATAATAAGAAAAAAA---TGTGTAAGTATGTGATGT-GACGG--CTG-CAACTAAAC CTATTTTGATGAA-CATTTTGCTATGTATGTGTATATCAA---ATCATATTTTACTCATTGGAATATTACAA-TGTAATA GGTTAATTATATCTCAATAAAAAATGGGAAAAAGGAAAA----AAAA-AAT-ATGGGA---AGGATCAAAATAGCAACAG AGGAAA-ACCACAGGTTACTCAAAA-TGGAGAGCAG >Bos_taurus AATTATGCTAGGCCTTTCAAGCAGAAAGAATCCAACATGGGAAATAAA---CT---AAAAACATATTGAA---------- --------TTCTCACCGTAGTATCATTTACAACAGTCAAGGTATGGGAACAATCCT-GTGTT-------TCATTAATGGA TGAATGCATGAAGAAGATGTAAAACATACACAC-----------------------------------------ACACAC ACACACACACACACATATGCATTTATTATTTAGCCATAAAAGAA---GGATATCCTGCCATTTG-AAAAATGTGGAGGGT GGATC----TTGAGGGAATTATGCTAAATGATATAATTCAAAC---ATTAAAAGACAAATCCTG-TATCATCTCATTTAT ATGTTGAATCTG-AGCAAACTGAAATTATGGAAACAGAGAATAGAT-GGTGCTTACCAGAGATGGGGCGTGGGGAGGGTG GGGGCAAAATGAGTGAAGGCGTTCAAAA--------CTTC-TGCTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------NNNNN NNNNNN-------------------------------------------------------------------------- -----------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Equus_caballus AGTTTTTCTAGGCATTTCAAGCAGAGAGAATTGAACACAGGAAATACA---TT---AAAAACATATTGGA---------- --------CATTCATTGTAACATTATTTACAGTAGCCAAGATGTGAAAACAATCTAAGTGT--------GCATCTTTGGC TGAATGGATAAAGGAAATATG----------------------------------------------------------- GTACATATATATACA-ATG-TAATATTATTCAGCCATAAAAAAGAA-GGAAATTCTGCCATTTGCAACAACATGGA---T GGACC----TTGAGGGCATTATGCTAAATGAAATAAGTCAAAT---AGAG-AAGACAAATATTG-TATGATCTCACTTGT ATGTAGAATCTG-AACAAACCTAAATCATAGATACAGAGAACAGATTGGTGGTGTCCAGAGGTGGGGGGCAGGGGAGT-- -GGGTGAAATGAGTGAAGGTGGTCAAAAGGTACAAACTTCCAGTTAT--AAGGCCAATAAGTCCTGGGGATGTAAAGTAC AGC--------ATGGTGACTCCAGTTAGCAATAC-GTAATGAATATTTGCAAATTGCTGAGAGAG--------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------TAGAT CTTGAA-------------------------------------------------------------------------- -----------AG-----TTCTCATCACAAGAAAA-AAA--TTTGTAAGTATGGGAGGT-GATTG--CTGTCAACTAAAC TTATTGTGGTGATACATTTTGCAATATGTACATATATCAA---ATCA---TGTACACTTTGGACTAATACAA-TGTTATA TGTCAGTTATATTTCAAT-AAACTGAGAAAAAAAGAAAAT---AAAA-CGT-ATTGAA---AGGATCAAAATAGCAAAAG AGAAAA-GTAAGTGGTTACTCAAAA-TTGGGTGCTG >Ceratotherium_simum AGTTATTCTAGGCATTTCAAGCAGAGAGAATTCAGCACAGGAAATAAG---GT---AAAAACATATTGGA---------- --------TGTTCACTGCAGCATTATTTACAATAGCCGAGACATAGAAACAACCTAAGTGT--------CCATCTTTGGA TGAATAGATAAAGAAAATATG----------------------------------------------------------- --GTTTATATTTACA-ATG-TAATATTGTTCAGCCATAAGAAAGGATGGAAATCCTGCCATTTGCAACAACATGGA---T GGACC----TTGAGGGCATTATGCTAAATGAAATAAGTCAAGG---AGAGAAAGACAAATACTG-TATGATCTCACTTAT GTGTGGACTCTG-AACAAACCTGAATCGTAGATACAGAGAACAGATTGGTGGTGTCCAGAGGTGGGGGA-AGGGGGGT-- -GGGTGAAATGGGTGAAGTGGGTCAAAAGGTACAAACTTCCACTTAT--GAGACAGATAAGTCCTGGGGTTGTAATGTAC AGC--------ACAGTGACTCCAGTTGACAATACTGCAATGAATATTTGCAAATTGCTAAGAGAG--------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------TAGAT CTTAAA-------------------------------------------------------------------------- -----------GA-----TTCTCTTCACAAGAAAA-AGAATTCTGTAGCTATGTGAAGT-GATTG--CTGTCAACTAAAC TTATTGTGGTGATACATTTTGCAACATATACATATATCAA---ACCATGTTGTACACTTTGGACTAATACGA-TGTTATT TGTCAATTATGTCTCAAT-AAACTGGGGAAAAAAGA-------AAAA-AAT-ATCAAA---AGGATCAAAATAGCAAAAG TGAAAA-GCAAGAGGTTACTCAAAA-TTGGGTGCTG >Myotis_myotis CATTATTTTAGGCATTTCAAGCAGAGGGAATTCAACACAGGAAATAGG---TT---AAAAACATATTTGA---------- --------TATGCCTTGCAGCATGATTTATAATAAGCAGGACATCAAAACAGGCTATCTGTGGATACAAGTGTCTATGGA TGAATGGATAAAGAAAATGTAGTATATGTA------------------------------------------------GT ACATATATACACACA-ATG-GAATATTATTCAGCCATAAAAAAGAA-GGAAAGTCTACCATTTGCAACAACCTGGA---T GGAATTTGATTGAGGGCATTATACTGAATGAAAT--GTCAAATAAAAAAAAAAGACAAATACCT-TGTGATCTCACTCTT ATGTGGAATCTG-AACAAACTGAAATCCTAGATCCAGAGAACAGATTGGCGGTTGCCAGAGGTGCGTGG-AGGTAAGT-- -GATCCAAATGGGTGATGATAGTCAAAGGGCACAAACTTCCAGTTAT--AAAAAAAATAAGTCCTAAGGGTATAATGTAC AGC--------ATGGTGACT--AGTCAACAATACTGTATTGTTTGTTTGAAAATTACTGCAAG----------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------TAGAT AGTAAA-------------------------------------------------------------------------- -----------AGTTCTATTCTCATCACAAGAAAAAA-----TTATAACTATGTGAGGT-GATTG--CTGTTAACTAAAT TTATTGTGGTAAT-AATTTTGCAATATATATGTATATCAA---GTCA---TGTATACTTTGGGCTAATTACA-TGTTATA TGTCAATTATGTCTTACTTAAACAGGGGAAAGAAAA-------GAAA-CATGATTAGA---AGGATCAAAATAGCAAAAG AGAGAA-GCAGGTAGTGATTGAGAA-CTGGGAGCTG >Rousettus_aegyptiacus AATTATTCTGGGCCTTTCAAGCAGAGAGAATTCACCATAGGAAATAAG---TT---AAAAACATGTTGGA---------- -TGTTCATCGTTCATTGTGGCATCATTTACAGTAGGCAAGACATCAAAACAGCCTAAGTAT--------TTTTCATTGGA TGAATGGATAAAG----TATGGTGTGTGTG-------------------------------------TCTGTCTGTGTGT ATACATATACATACA-ATG-GAATATTATTCATCTATAAAAAAGAA-GAAAATCCTG-CGTTTGCAACAACATGGG---T GGAGC----TTGAGGGCATTATGCTAA---AAAGAAGTCGAA----ACAGAAAGACAAATACTG-TGTGATCTCACTTCC ATGTGGAATCTT-AAAAAACTGAAATCATAGATACAGAGAATAGATCGGTGCTTGCCAGAGGTGTGAGG-AGG------- -GGGCAGGTGGGGCAAAAGAGGTCAAAA-GTGCAGATTTTCAGCTCT--AAG-----TAAGTTCT-AGGATGTGACAGAC AGC--------ATGGTGCCT--AGTTAATGGTACTCTATTGTAGATTTGCAAATTCCTAAGAAAG--------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------TAGAT CTTAAA-------------------------------------------------------------------------- -----------AG-----TTCTCATCATAGGAAAA-AAAA-TATATAACTATATTAGGT-GAT-----TGTTAACTAAAT TTATTGTGGTAAT-CATTTTTCAGTATATACAT-TATCAA---ATCA---GGTATATTTTGGACTAGTAAAA-TGCGATA TGTCAATTATATTTTAATAAAATGGGGAGAGGGAG--------AAAA-ACC-ATTGGA---AAGATGAAAATAGCCAAAG GGAAGA-GCAAGTGGTTACTCAGAA-TTGGGAGCTG >Condylura_cristata AGTTATTGCAGGCATTTCAAGTAGAGAGAATTCAGCACAGGAAATAAG---TT--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------AAAA-TAT-ATCGGA---AGGGTCAAAACAGCAAAGG AGAAAAAACAA--AGTTCTTCCAATATTAGAA-CTG >Uropsilus_gracilis AGCTATTCTAGGAATTTCAGTCGGAAAGAATTCAAAACAGGGAATGAG---TT--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------GAAA-CAT-ATTGGA---AGGGTCAAAACAGCAAGAT GGAAAAAGCAACTGAGTATTCAAAT-TTGGAC-CTG >Homo_sapiens AGTTATTCTAGGCATTTCAAGCAGAGAGAATTCAACACAGGAAATTAG---TT--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------ATA--CAT-ATCAGA---AGG-TCAAAAGAGCAAAAG AGAAAA-GCAAGTGGTTATTCAAAA-TTAGGAGCTG Dog360_LINE >L1_Carn7_3END -------------------------------------------------------------------------------- --TTCACTTATATGTGGAATCTAAAAAACAAAACAAATGAACAAAAAAAAACAAACCAAACAGACTCATAGATACAGAGA ACAGATTGGTGGTTGCCAGAGGGGAGGGGGGTTGGGGATGGGTGAAATGGGTGAAGGGGG-TCAAGAGGTACAAACTTCC AGTTATAAAATAAATAAGTCATGGGGATGTAATGTACAGCATGGNGAATATAGTCAATAATATTGTAN------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------TAACNTTGTATGGTGACAGATGGTAACTAGACTTATTGTGGTGATCACTTCACAATGTATA CAAAT--GTCGAATCACTATGTTGTACACCTGAAACTAATATAACAT--TGTATGTCAATTATACTCAAATAAAAAAA-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------- >Canis_familiaris AATTA--CATATT--------C-----TA-----TGTCCTAAGGCAACAAATTTAAAAGCTT---ATA----AAATGAG- --------TACATACAGAGATACAAAGATCACAGATATGGATAATAATTTAGTTGCCAGAGA---TCACAGATACAAATA ACAGACTGGTGGTCACCAGGGCAG--GGTATGAGGGGGTGGGTGACAGGGACAGATGTGG-TC-AAAGGTATAACCTTCT AGTTATAAGATAAATAAGTTCTGGGCATGTAATGTTCACCATGGTGACTATTGTTAGCAATAGTGTATTATATAACTGAA AGTT---------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------TCATCA CAAG------AAACAACTATAACTAT--GTAATGATAGATGCTACCCA--------GTGTTAATCATTTAGCAATATATA CATATACATCTAATCA-TGTGTTGTACACCTAAAATCAACAGAATGT--TGTATGTCAATTATATTTCAATCAA------ ----------TTTTTT---AAAAAACACAT-GGG---CAATTTCCTAGCCAAAACTTGATTC--AA-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AAGAAATTGAAAATTTAAAT-GG >Felis_catus AATTA--CATAGTAGGGAATAG-----TAAATGCTATCCTAAGGCAACAAATTTGAAAGCTT---ATGAAGCAAATGAG- --------TAGAGACGGACA------------------------------------TGAACA---TCATGGATATGGAAA ACAAAGTGGTGGTTGCCAGGGTCT--G-------GGTGTGGATGGCATGGATAAAAATGG-TCAAAAGGTACAAACTTGC AGTTATAAGACAAGTAAGCTCTGGGCATACAATGTACAGCATGGTGACTACAGTTATCAATAATGTATTGT--ATTTGAA AGTTGCT--GACAGTAAATCTTAAAA------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------GTT-TCATCA CAAGAAAGAGAAACAATTGTAGCTGT--GTCGTGATAGATGTTAACT--------TGTGCTGATCATTTAGCAATATATG CATAC--AGCAAATCA-TATGTTGTATACCTAAAACTACTAAACTGT----TATGTCAGTTATATCTCAATCAATCAATT AAAAAAAAAA----AA---AGAAAACACAT-GAG---CAATTTCTTACCCAAAACTTAATCCAAAA-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AAGAAGATGACAACTGTAAT-GG >Manis_pentadactyla AATTATGCGTACTATGGAATAC-----TACATGTTATCCTGAGGCAACAAATTTAAAAGCTT---ATAAAACAAATGGG- --------TACATA------------------------------------------CAGAGA---TCATAAATACACATA ACAGACTGGTGGTTGCCAGAGTG-----------GGGGTGG---AAATGGATAAAGGTAG-TCAAAAGGTACAAACTTCT AGTTATAAGATAAATCAGTCCTGGTCATGTAATGTATAGCATGGTGACTTCATGTAACAATCATGTAC-----ATTTGAA AGCTTCCTA-AGAGTGTATCATAAAA------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------GTTCTCATCA CAAG------AAATAAATGTAACTAT--GTGGTGATAGATGATAACTAAAATTATCGTGATAATCACTTAGTAATATATA TATAT----TAAATAACTATGTTGTACATCTAAAACTA---CAATGT---------CAATGGTCTCTCAAAATAAATAAT TAAAAAAACA---ACC---AAAAAACAAATGGGG---AGATTTTCCAGCCAAAACTTGACCC-AAA-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AAGAAACTGAATACTTTAAT-GG >Sus_scrofa AATTA--TTTATTAAGGAATAC-----TACATGTAATCTCAAGGAAACAAATTTAAAAGCCT---ATACAGCGAATGCA- --------TACATA------------------------------------------CAGATA---TCAGAGATGCAGAGG AGAGACTGCTGGTTGACAGGGGCT----AGGTCCAGGGTGGGCAAAATGGGTGAAGGCGGATCAAAAACTACAAAGTCCT AGTTACAGAATAAAT----CCTGAAG-----ATGTGCAGCATAGCGAC-------AATAACAATGTATCACATATTTGAA TGTTGCTAAAAGAGTAACCCTTAAAACATTCTTTTCATGGAGTTCCCGTCCTGGCGCAGTGGTTAACGAATCCGACTAGG AACCATGAGGTTGCGGATTCGATCCCTGCTCTTGCCCAGTGGGTTAAGGATCCAGCGTTGCTGTGAGCTGTGGTGTAGGT CAAAGACGTGGCTCAGATCCTGAGTTGCTGTGGCTCTGGCATAGGCCGGTGGCTACAGCTCTGATTAGATCCCTAGCCTG GGAACCTCCATATGCTGGGGCAGCGGTCCTAGAAAAGGCAAAAAGACAAAAAAAAAAAAAAAAAAAAAAGATTCTTTTCA CAAGAAAAAAAAATTGT--TAACTATGTACCATGATGGATATAACCATATATTACCGTGATAGTCACCTCACAACACAGA CATGT--ATCAAGTCAC------------------CTGAGATAATGTTACATATATCAATTATATTTCAACTAAAAATTA ATACAAATTT----TT---AAAAAGCAAAA-GGA---CAATTCCCTAGCCAAAATTTGATCC-AAA-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AAGCAGCAGAAAACTTTAAT-GG >Tursiops_truncatus AATTA--TGCATTAGGGAATACTATAATACATGTTATCCCAAGGTAACAAATTTAAAAGCCT---ATAAAGCAAATGGG- --------TACATACAGATATC----------------------------------CAGAGA---TCACAGATACGGAGA AGAGACTGGTGGTTGTCAGAGGCT--GAGTATG-GGGGTGGGCAAAATGGGTGAAAGTGG-TCCTAAAGTACAGCCTTCC AGTTATAGAATAAGTAAGTCCTGAGGATGTAATGTAAAGCATAGTGACTACAGTTAACAGTAAGGTATCAGATATTTGAA TGTTGCTAAGAGAGTAGATCTAAAAA------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------GTTCTCTTCA CAAG--AAAGAAGCTATTGTAACTATGTGTGGTGACAGATGTAAACTAAGCTTACTGTGGTAATCAATTCAG-------- ----------AAATCA------------CCTGAAACTAATACAATGTAATACATGCCAATTATATTTCAATATAAAA--- TAAATAATTT-----T---AAAAAGCAAAT-GGA---ATATTTCCTAGCCAAAACTTGATCC-GAA-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AAGAAGCTGAAAACTTTAAT-GG >Equus_caballus AATTA--CATATTAAGGAATAC-----TACATGTTCTCCTGAGGCGACAAACTTAAAAGCCT---ATAAAGCAAATAGG- --------TACATA------------------------------------------CAGAGA---TCGTAG--------- -CAGATCGCTGCTTGTCAGAGGTG--GAATGAGGCGGGTAAGCGAAATGGGTAAAGGTGA-ACAAAAGGCACAAACTTTC AGTTGTAAGATAAAA----CCTTGGGATGTAATGTACAGCATGATGACTACTGTTAACAATAATGTACTGTGCATTTGAA AGTTGCTAAGAGAGTAAATCTTAAAA------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------GTTCTCAGCA CAGGAAAAAGAAACAATTGTAACTATAAGTGGCAGT-GATGTTAACTAAACTTACTGTGGTAATCATTTTGTAATACGTA CATAT--AACAAATCATTATGTTGTGTACCTAAAACTAATACAATGT--TGTATGTTGACTATATCTCAGTAGAAAAA-- TAAGTAATTTTTTTTA---AAAAAGCAAAT-GGG---CAATTTCTTAGCCAAAACATGATCC-AAA-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AAGAAGCTGAAAACTTTAAC-GG >Ceratotherium_simum AATTA--CATATTAAGGAATAC-----TACATGTTATCCTGAGGCAACAAATTTAAAAGCCT---ATAAAGCAAATGGG- --------TACACATAGAGATATAAGGATA--------------------------CAGAGA---ACACAGGTACAGGTA ACAAATTGGCATTTGCCAGAGGGT--GAGTGTGGGAAGTGGGCGAAATGGGTGAAGGGGG-TCAAAAAGTACAAACTTCC AGTTATAAGATAGGT----CCTGGGGATGTAATGTACAGCATGATGACTACAGTTAATAATAATGTATTCTATATTTGAA AGTTACTAAGAGAGTAAATCTTAGAA------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------GTTCTTATCG CAAG--AAAAAAACAATTGTAACTATGAGTGGTGAT-GATGTTAACTAAACTTATTGTGGTAATCATTTTGCAGTATACA CATAT--ATCAAATCATTATGTTGTACATTTAAAACTACAACAATGT--TGTATGTCAATTATATCTCAGTAAAAAAATA TATAAAATTTTTTTTA---AAAAAGCAAAT-GGG---CAATTTCCTAGCCAAAACTAGATCC-AAA-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AAAAAGCTGAAAACTTTAAT-GG >Myotis_myotis AATTA--CATATTAGAGAATAC-----TACATGTCATCCTGAG---ACAAGTTTACAACTAT---AAA--GCAAATGGG- --------GAGATAGAAAGATA----------------------------------CAGAGA---TCAGAGATATAGATA T----TTGGTGGTTGCCA-------------------------------------------------------------- --------------TAAGTTCTGG-CTTGTAATGTATAGCTTAGAGACTAGAGTTAACAATCTTATATTGTATATATGAA AGCTGCTAAGAGAATAAAT------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --AAGAAAAGAAACTACTGTAACTATGTGTAGTAATGGATATTAACTAAACTTGATGCAGAAATCATTTTGCAATACGTA CATAT--ATCAAATCATTATGTTGTACATTGAAAACCAATGTAATGC--TATATTTTGATTCTACCTCAACAAAACATTT AAAATAT------------CTGAAGCAAAT-GGG---CAATATCCCAGCCAAAACTTGATATAAAA-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AA-----TGAAAACTTTAGT-GA >Pteropus_giganteus AACTG--CTTATTAGAAAATAC-----TGCATGTGATCCCGAG---ACAAATTTAAAAGCCC---ATAAAGCAAATGGA- --------GAGAGATA----------------------------------------CAGAGA---TCATGGCTATAGATA CCAGATTGGTGGTTGCCACAGGCA--------CAGATGTTGGTGAAATGTGTGAAAGTGG-TC-AAAGGTAAGAATTTCC AGTTATAA---------GTCCTGGGCATGTAATGTACAGCATGGTAACTAGAGTTAACATTACTGTATTGTATATATGAA AGTTGCTAAAAGAGTAAATCTTAAAA------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------GTTCTCATCT CAAG-AAAAGAAACTATTTTAACTATGTGTGACGATGGATGTTAACTAAACA---------------------------- -------ATCAAATCATTATGTTGCACATCTAAAACTAATGCAATGT--TGTATTTCAATTGTATCTCAATAAACAAAAT TAAAAAAAAT---------AAAAAACAAAT-GGG---CAATTTCTCAGCCAAAACTTGATGC-AAA-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AAGAAGCTAAAAACTTTAAT-GA >Condylura_cristata AACTA--TGCA----------------TGAATGCTGTCCTGGGGCAACAAATTTAAAAATCC------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------ATAAAGGAAAT-GAG---TAATCTCCTAATTAATATTTGACCC-AAA-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AAGAACATAAAAGCTTTTACAAG >Sorex_araneus AATTA--TGAGTTAGGAAATAT-----TACATGTTATCCTGAG--AACAAATTTAAAAGCCT------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------ATAAAACAAAT-GGG---TAATC--------AAAACTTGATCCAAAATGAAAACTTCTTTT TCCCTTTGAAGTGGCCAAAGCTAGCAGTAACTCCGGGGATACCCTTGGCTGTGTTCAGGTGCTACTCCAGCAGAGACCAG CAGGCCAGAGGGATGTTGAAGGGCAAACCAAGGCTGCCCACGTGCAAGGCCCGCGCCTCAATAACTCTACTATTTCTCAG GCCCTGAGAAACTGAAAACTGTAACAGG >Galeopterus_variegatus AATTA--TGTATTAGAGAATAC-----TACATGTTATCCTGAGGTCAAAAAATTAATAGCCT------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AAA--GCAAAT-AGG---CAATTTCCTAGCCAAAACTTGACCC-AAG-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AAGAAACTGAAAACTTTAAT-GG Dog361_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------TTTTTCCAGCTTTATTGAGG-TATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACG-TGATGT TTTGATA-TACG-TATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATC-ACCTCACATAGTTACCA TTTT---TTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAAATTTCAAGTATACAATACAGTATTATTAACT ATAGTCACCATGCTGTACATTAGATCTCCAGAACTTATTCATCCTGCATAACTGAAACTTTGTACCCTTTGACCAACATC TCCCC--------------------------------------------------------------------------- -------- >Canis_familiaris GGCCCACGTTCTC--ATGG-GCT---AATAATATTGTTGGTAC---TTTATTACCAAAC---TAAAATTT---------- -------------------------TTAAATTTGTCATT----------------------------------------- -----------AATTATTATTTT--------------------------------------------------------- ---CTTTCTTTTTTTAC----ATTGGAA-TGTAATTGACTTAT-AACATTGCATTCATTTTAGGTGTACAACA-TAATTA TTTAATT-TATG-TATGTATTGTGAAATGATTATGACAATAAGTCAGGTTA--ATATCCATC-ACCTCACATAGTTA-TA TTTT---TTTTCTTATAATGTGAACTTTCAAGGTCTGCTCTCTCAGCAACTTTCAAATATATACCACAGTGTTGTTTACT GTCATCACAACTCTATTCTTTACATCCTCAGGACTTATTTATCTT--ATAACTGGAAGTTTGTGCCTTTTGACAACCT-- --------TAG-AATAT---GATTTCCATTCAG--------------TAATGCAACTT----GGAGTACCAATGCTAATA GATGAGTT >Felis_catus GGCCAATGTTCTC--ATGG-ACT---AATAGTAACGTCGGTAC---TTTATAACCAAAA---TTGAACTT---------- ---------------------TAAAAAAAATCTGTCACT----------------------------------------- -----------TATTATTATTAC--------------------------------------------------------- ----TTTCTTTTTTTAG-----TTGAGA-GATATTTGACATAT-AACATGGTATTCATTCTAGGTGAACACCA-TAATGA TTTGATATTAGG-TATAGACTGTGGACCGAT-ACAACAATAAGTCTAGTTC--ACATCCACC-ACCTCGCATAGTTA-CA ATAT---TTTCCTTACAATGTGAACTTTCCAAGTCTACACTCTTAGCAACTTTCATATATATAATACAGTGTTGTTAACT ATAGTCACCATGCTGTTCATTACATCCTCAGGACTTATTTT------ATCTCTCTAAGTTTGTGCCTTCTGACCGTCT-- --------TAG-AATAT---GATTTCCATTTAA--------------CGATGCAGATT----GGAGTACCAATGCTAATA GATGAGTT >Manis_javanica GGCCACTGTTCCCCTCTGG-CCT---GATAATAATGTTGGTGC---TTTATTACCCAAA---TAGAAGTT---------- ------------------------TTTAAATCTGTTGTT----------------------------------------- -----------CATTATTATTTT--------------------------------------------------------- CTTCTTTCCTTTTTTAA----------------ATTGAGATAT-AACAGTGTATTAGTTTTAAGTGTACAACA-TAATGA TTTT----TATACTATGTAGAGTGAAACGATTACCACATTAAGGTTAGTTA--ATATTCATC-ACCATCTACAGTTAACA ATTT--TTTTCCTTGTCATGTGAATTTTTAAGATCTACTCTCTCAACAACTTTCAAACATACAATACAGTAGTGTTAACT GTAGTCACCGTGCTATTCCTTACATCCTCAGGACTTACTTATCTT--ATAACTGGAAGTTCATACCTTT-GACCAGCT-- --------TGG-AGTTT---GCCTTCCACTCAG--------------CAGTGCAGATA----GGAGTANNNNNNNNNNNN NNNNNNNN >Sus_scrofa GGCCAATATTCCC--ATGG-ACT---AATAATAATGTTGGTAC---TTTATTATGAAAA---CAGAATTT---------- ---------------------------TTATCTACCATT----------------------------------------- -----------CATTATT-------------------------------------------------------------- ------TTTTTCCTTAA----GTTGAGA-TATAATTGACATAT-AACATTGTATTAATTTTAGGTGTGTAACA-TAATGA TCTGATG-TATA-TGTGTATTGTGAAATAATTACCACAATAAGTCTAGTTAACATAGGTGTTAACTAAATAGAGTTA-TA ATTTGTGTGTGTGTGTGATATAAACTTTTAAGGTCTACTCTCTTGGCAGCTTTCAAAT-TACCATACGATATTGTTAACT ATAGTCACTCTGCTGTTCATTACTTCCTCAGGACTTATTTT------ATAATCGAAAATTAGTACCTTTTGACTACCA-- --------TGG-TATTT---GATTTCTATTCAG--------------CAGTGCAGATT----GGTG-----ATGCTAATA GATGAGTT >Bos_taurus GGCCAGTGTTCCC--ATGG-ACTAAAAATAATAATGTCGGTAC---TTTATTAT---AA---CAGAATTT---------- ------------------------TTTAAATCTATTGTTGTTTTTTTATTAAACTATACTTGATATA------------- -----------CATTATTGTGTTGGTATCAAGTGTACAACAAAATGGTTCAGTTATATATATATATTCTTCTCATATGTT TTTCTTTCCTTTTTAAA----ACAGAAA-TACAATTGATATAT-AACATTGTATTAGTTTTAGATATATAATG-TAAAGA TTTTATA-TATA-TGTATATTTTGAAACAATTATTAAGGTAAGTTTAATTAGCATAGATGTCAATTACACATAGTTATAA TTCT---TTTTCCTGTGATGTGAACTTT-AAGATCCAGTCTCTTGGCAACTTCCAAATAGATCATATGGTCTTGTTAACT ATAGTCATCCTGCTGTTCACTACATCCTCAGGACTAATTTATGTC--CTAACTGGTAGTTTGTCCCTTT----CACCT-- --------TGG-AATTT---GATTTCCATTAAGAAATCATTTGATTTTGATGCAGATT----GGTATATGGACACTAATC GAT-AGTT >Equus_caballus GGCCAATGTTCCC--AAAG-ACT---AGTAATAATGTTGGTAC---TTTATTACCAAAA---TGGAATCT---------- -------------------------TTTAACCTATCATT----------------------------------------- -----------CATTCTTATTTT--------------------------------------------------------- --TCTGGTTTTTTTTAA----ATTGAGC-TATCATTGACACAT-AACAGTGTATTAGTTTTAGATGTACCACA-TAATGA TTTGATA-TATG-TATATATTGTGAAATGATCACCACAGTAAGCTTAGTTA--ACATCCATC-ACCACATATACTTA-CA TTTT---TTTTCTTGTGATGTGAA-TTTTAAGACCTAGTCTCTTAGCAACTTTCAAATATATAATACAGTATTGTTAACA ATAGTTATCATGCCATTCATTACATCCTCAGGACTTATTTATCTT--ATAACTGGAAGTTTGTACCTTTCGACCACCT-- --------TAG-AATTT--------TCATTCAG--------------CAATGCATATT----GGAGCCCCAATGCTAAGA GATGAATT >Ceratotherium_simum GGCCAATGTTCCC--ATAG-ACT---AATATTAATGTTGGTAC---TTTATTACCAAAA---TGGATTTT---------- -------------------------TTAAAGCTATCATT----------------------------------------- -----------CATTATTATTCA-----------------------------------------------------TATG TTTGTTTCTTTTTTAAA----ATTGAGATTATCATTGACATAT-AACAGTGTATTACTTTTAGGAGTACAACA-TAATGA TTTGATA-TATG-TATATATTATGAAATGATCACCACGATAAGCTTAGTTA--ACATCCATC-ACCACATATAGTCA--- ------------------------CTTTTAAAATCTACTTTCTTAGCAACTTTCAAATACACAACATAGTATTGTTAACA ATAATCATCATGCCATTCATTACATCCTCTGGACATATTTATCTT--ATAACTAGAAGTTTGCACCTTTTGACTACCT-- --------TGG-AATTT--------TCATTCAG--------------CAATGCAGATT----AGAGTACCAATGCTAATA GATGAGTT >Condylura_cristata GGCTGGTGTTTTC--ATGGGACT---AAT-CTAATGTTGGTCC--TTTTATTATCAAAA---TTAAATTT---------- -----------------------------ATTTATCAAT----------------------------------------- -----------CATTGTTATTTT--------------------------------------------------------- ------TATTTTTTAAA-------------ATAATTGATATTA-AACATCGTATTCATCTCAGGTGTACA-CA-TAATGA TTTAC---TATT-TATATAGACTGAAATGATCAGCATTGTGCATGTAGTTA--ACATCTGTT-ACCACA---------CA TTTT---TTTTCTGGTGCTGTGAACTTTTAAGATCTACTCTCTAAGCAGACATCAAATACACGACACAGTATTGTTAGCT ATT-TCACTATACTGGACATTCCATGCCCAAGATTTCTCTT------GTAACTAGAAATCTGTGCCTTT-GACTACCT-- --------TTA-AATTT---TATTTCTGCTTAT--------------CAATATAGGATATCAGCCATACTGATACTAATA GATGAAGT >Erinaceus_europaeus AGTCAATGGCCCC--AAAG-ACT---AATAACAATGTGAGTAG--CTTCATTACTCAAA---TAGAATTT---TGAGGGT CAGTGATTTATATTACAGTTGTTGATACAATTTCTCATCTCCCCATAATAAGTATCTGCAGAACACACTCATCCCCAGCT TGGGCCTTTTCCATTCTCATGCA---------------------------------------CCAGGACCTCACATCATT TATTATACTTTCCTTCATTTTGTTGAGA-TATAGTTGACGTAT-CACATTATAATATCCTTAGGTATATAACATTAGTGG TTTCATA-TATG-TATATACTGCACAGT----ACTATGATAA--CTATTCAATATAT----------------------- -----------------------------------------------------------TATTACAAAATACTGTTAATC ATAGCCACCAAGATG-----CATGTCCCTAGTATTTACTG-------ATAACTTGAAGTGTGTACTTTCTGACTACCC-- --------TGGAAATTT---TATTTCCATTCAG--------------CAATGCAAATT----AGAGTACCAGTGTCACTA AGTAGGTT >Myotis_myotis GGCCAATGTTCCC--ACAG-ACT----ATACTAATGTTGCTAC--TTTTATTACCAAGA---TAGAATTT---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------GATTTCCATTCAG--------------CAATGAAGATT----GGAGTAACAACACTAATA AATGAGAT >Rousettus_aegyptiacus GGCCAATGTTCCC--ATAC-ACT----TTAATAATGTTGGTATTATTTTATTATCAAAA---TAGAATTT---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------GATTTTCATTCAA--------------CAATGCAGATT----GGAGTACCAATACTAATA CATGAGAT >Homo_sapiens AGCCGATGTTCTC--ATTG-GCT---AATAATAATGTCAGTAC---TTTATTGCCAAAA---TAGAATTT---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------GATGTCCATTTGG--------------CAATACAGATT----GGAACACCAATGCAAATA GTTAAGCA Dog362_LINE >L1MA9_3END -------------------------------------------------------------------------------- ---------------------------------------------------------------ATCTAAAAAAGTCAAAC TCATAGAAGCAGAGAGTAGAATGGTGGTTGCCAGGGGCTGGGGG------GTGGGGGAAATGGGGAGATGTTGGTCAAAG GGTAC-AAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGTACAGCATGGTGACTATAGTTAATAATACT GTA------------TTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAG--TGTTCTCACCACACAC--------A AA---AAAATGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTAT ----ATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA -------------------------------------------------------------------------------- ----------------------------------- >Canis_familiaris TTTTTTTGCTTCTTATGAAGTCTTACATGACAATAAAGGAT--------------------------------------- -----------------------------------TTTGAGAT---AAACAAAGTAGAGG---------GAAAATTAAAC TCCTAGAAAC--AGAGTAAGAAAGTGGTTGCCAAGGGCCTGGGGAGTAGAATGGGAAAAATAGAGAATGCTTGGTAAAAT GCTAA-AAACTTGCAGTTAT--AAAATGAATCAAGTCTGAGGATCTGACATACAACTTGATAACTATAATTGGAA----- ---------------TTGTATAATTGAAATTTATTGAGAGAGTAGAGTTTAAA--TGTTCTCATCCTCCCT--------A TCC--CCAAAGGTAAGTATGTAAGATCATAAATGTGTTAATCAATTTGTTTTTAGGAATCCTTTCACAACATATATGTAT ----ATCAAATCATCACATTATATAGTTTAAATATCCTAAATT----TTTGTCAATTATCCCTTAATAGAGCTGAAAAAA A----------TCC-----AAAGAGAATGTACT---TTAATAAA--------------AAAAT----------GTTAATG GAGAA-----TAAATGGGGATTATTTTTAATTTTA >Felis_catus TTTTTTTGCTTCTCGTGAAATCTTACGTGAGAGTAAAGGAT--------------------------------------- -----------------------------------TTTGAGAT---AAA----GTATAGG---------GAAAGTTAAAC TCTTAGAAAC--GTAGTAGGAAAGTGGTGTCCAAGACCTGAAGG-GTGAAATGGGAGAAATCAAGAATGGTTGGTAAAAT GGTAA-AAACCTTTAGTTTT-TAAGATGGATCAGGTCTAAGGATCTAATGTATAACATGGTAATTATACTTGATAATTAT ACATAGTAAATATACTTGCATATTTGAAATTTGTTAAGAGAGTAGAGTTTAAA--TGTTCTCATCCTCCCC--------A CCC--CTAAAGATAAATAAGTGAGGTGATGGATGTGTTAATCAA----ACTGTAGGAATTCTTCCACAACATATATGTAT ----ATCAAATCATCATATTATACATTTAAAATATCTTACAAT----TTTGTCAGTTATGCCTCAATAAGGCTGAAAAAA AAA--------TCC-----AAACAGAATGTAGC---TTAAAAAAT----------------------------GTGAATA GATAA--GTGTAAATGGA-ATTACTTTTCATTTTA >Manis_pentadactyla TTTCTTGGCTTCTCATGAAGTCTTACATGACAATAAG-AAT--------------------------------------- -----------------------------------GTAGAGAT---AAACAAGGAACAGG---------AAAAGTTAAAC TCACAGAAAC--ATAGTAGAAAAGTGGAAG---AAAGCTGGAGG-------GTGGGGAAATAGGGAGTGATTAGTAAAAG AGTAT-AAACTTGCTGTTAT--AAGATGAATAAGGTCTGAGGATATAATATATAACATGGTAGCTACAGTTGAGAACACT GTA------------TTATATAACTAAAATTTGCTAAGAGAGTAGAACTTAAATTTGTCCTCCTTGCCCCCCACCTCAAA CCCTGCCAAAGATAATTATGTGAGGTAATGGATGTGTTTATTAAATTCATTGTGGGAATCCTTTCACAATGTATACGTAT ----ATCAAATCATCACATAATACTCTTTAAATGTCTAACAGT----TTTATCAATTATATCCCAATAAGGCTGAAGA-- -------------------AAAAAGAGTGCGGG---TTCAAAAGTATT----TTTTTTAAAGT----------------- ---------GTAAATGAAGAATACTTTTTATTTTA >Sus_scrofa TTCATTGGTTTCTCATAAAATCGTACATAAAAATAAA-GAG--------------------------------------- -----------------------------------TTTGAGAT---AGACAGAGGGTAGG---------AAAAGTCCAAC TCATAGAAAGAGACAGCAGAAAAGCAGGTGCCAGGGGCTGAGGG------GTGGGAGAAATAGGTA-TGATCAGTAAAAG GATAT-AAACATTCAGTTAT--AAGATGAATAAATTCTGAGGATCCAATACAT---------------GCTGATAACACT GTA------------TTGTAGGATTGGAATTTGCTAAGACAGTAAAACTTAAA--TGTTTTCATCCC------------- -------------------ATGAACTGATAAATGTGTGCATCAATGTCATTGTGGTCATT-TTTCACAATGTATATGCAT GTACATCAAATCATCACACTGCAGATTTTAAAC-TCTCACACT----TGCAGCAGTTCCCACCCGTGAATTATTAGAAAA GGAGA-------AC-----AAANNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Tursiops_truncatus TTTATTGGCTTCTCATAAAATCTTCCATAACAATGAA-GAT--------------------------------------- -----------------------------------TTTGAGAT---AAACAGAGTGTAGG---------AAAAGTCAAAC TCATAGAAACAGACAGTAGAGAAACGGTTGCCGGGGG-------------GTGGGGGAAATAGGGAGTGATGGGTAAAAT GATAT-AAACTTTCAGTTAT--AAGATGAATAAATTCTGGGGATCCAATGTATAACATGGTGACTATAGTTGATAACACT GTA------------TTGCATAACTGAAATTTGCTAAGACA-TAGAACTTGAA----------------CC--------- -----CCAAAGATAAATATATGAGGTGATGAAAATGTTAATTAACTTCATTGTGGGGATTCTTTCACAATGTATATGTAT GTATATCAGATCATTATATTGTACACTTTAAATATCTTGCACC----TGTAGCAATTTCCATCCTGGAATTATTAGAAAA GGAGA-------AC-----AAANNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Equus_caballus TTTCTTGGCTTCTCTTGAAATCTTACACAACAATAAA-GAT--------------------------------------- -----------------------------------TCTGAGAT---AAACAGAGTGTATG---------AAAAGTCAAAC TCAGAGAAACAGAGAGGAGAAATGTGATTGCCAGGGGCTGGAGG--TGAAGGTGGAGAAATAGGGAGTGGCTGCTAAAAG AGTATAAAACTTTCAGTTAT--AAGAGGAATACGGTCTGAGAATCTACTGTATAACGTGGTGACTAGAGCTGATAACACT GTA------------TTATATGATTGAA-TTTGCT--GTGAGTAGAACTTAAA--TATTCTTACATCTTCC--------- -----CCAAAGATAAATATGTGAGGTGATGGATGTGCTAATTAACTTGATT-TGGGAATCCTTTCATAATGCATATGCAT ----ATCAAGTCATTACATTGTACACTTTAAATATCTTATAAT----TTTGTCAATTATACTTCAGTAAGGCTGAAAAAA AAAGAAAAAAAAACCC---AAAATGAGTGTAGG---TTCAAAAATATAAAAAAATAATAAAGT----------GTGAATG GAGAATAGAGTAAAAGGAGACTCCTTTTTGTTTTG >Ceratotherium_simum TTTTTTGGCTTTTCTTGAAATCTTACATGACAATAAA-GAT--------------------------------------- -----------------------------------TTTGAGAT---AAACAGAGTGTAGG---------AAAAGTCAAAC TCATAGAAACAGAGAGTAGAAAAGTGGTTGCCAGGGGTTGGGGG--TGGGGGTGGGGAAATAGAGAGTGGTTGGTAAAAG AGTATAAAATTTTCAGTTAT--AAGATGAATAAGGTCTGAGAATCTAATGTATAAAGTGGTGACTATAGTTGATAACACT GTA------------TTGTATAATTGAA-TTTGCTACGAGAGCAGAACTTAAA--CATTCTCATATCCCCC--------- -----CAAAAGATAAATATATGAGATGATGGATGTGTTAATTAACTTGATTGTGGGAATCCTTTCATAGTGTATATGTAT ----ATCAAATCATCATATTGTACACTTTAAATATCTTATAAT----TTTGTCAAATATACCTCAATAAGGCTGAAAAAA AAAGAAAAAAACTCAA---AAAATGAGAGTAGG---TTAAAAAATATAAAAAAATTATAAAGC----------GTGAATG GAGAATAGAGTAAATAGA-ATTACTTTATATTTTA >Myotis_myotis TTTCTTGGTTCCTCATGCAATCTTACAAAATAATAAT-GAT--------------------------------------- -----------------------------------TTT------------------TAGG---------AAAGGTCAAAC TCATAGAAACAGAGAATAGAAAAGTGATTTTCAGGAGCTAGAAG------ATGGGGAAAATAGAGAGTAGTTGATAAAAG GGTGT-AATGCTTCAGTTAT--AAGGTGAA-----------AATCTAATGTAAAACATGGTGACCATAGTTGATAACATT GTA------------TAGTATAATTGAAATTTGCTAAGAGAGTAGAACTTTAA--TGTTTTGAAATCCCAC--------C AC---CAAATAATAACTATGTGAGGTGATGGATGTGGTAAT-AACTCAATT-TGGAAATCCTTTCACAATGTATGCATAT ----AACAAATCATCACATCATATACCTTAAGTATCTTACATT----TTTTTC--TTTTACCTCAGTAAGGTTGAAAAAA -----------ATCCA---------------AT---TTTTAAAATGTAAAAACAT------------------------- --------------TAAAGATTACTCTTTATTTTA >Rousettus_aegyptiacus TTTCTTGGTTTCTTATGAAATCTTTCATGCCAATAAA-GAT--------------------------------------- -----------------------------------TTT------------------CATT---------AAAAATAAAAC T--------------------------------------------GCAAAGTGGAGGAAATAATGAGAAGTTGGTAATAG GGTGC-AAGCTCTCAGTTTT--AAAATGAA-----------AATGTAATATAAAACATGGTGACTGTAGTTGATAATATT GTA------------TTACATATTTGAAATATGCTAAGAGAGTAGAACTTTAATGTATTTATACTTCTCCC--------T GCCCCTGACAAACAATTATGTGAAGTAATGGATAT-------AACTTCATT-TGGGAGTCCTTTTACAATATGTACATAT ----GTCA---CATCACATTGTATACTTCAAATACCTTACAAT----TTTGTCAATT-TACTTCAATAAGGCTGAACAAA ----------AATC--------A-GAGTGTAAT---TTTAAAAATATGAAAACA--ATAAAAT----------GTAAATG GAGAACAGAGTAAATGGAGATTATTTTAT-TTTTA >Condylura_cristata TTTCCTTACTTCTTGTGTAATCTT-CATGGCAATAAA-GAT--------------------------------------- -----------------------------------ATTGAGAT------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AAAC--AGTGTAGG---TT----CATTCTAATATAATTTAAAGT----------GTGACTA GAGAA-----TAGATAGGGATTCCATTTTGT---- >Uropsilus_gracilis TAGCTTTATTTTTCATGAAGTCATGTA-GATTATAAAATATATATTTCATAAAATCTTATATAGATTATATGTTATATTT CTATAAATAGAAACCTTATATCTCAAAATGAAGGTTTTGAGAT------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AAAC--AGTAGAGG---TTTAAGTATACAAGAAAAATATGAAGT----------GTGAAAG AAGAATAAAGTATATGGAGATTACTTT-TATTTTG >Homo_sapiens CTTCCTGGCTTCTCATAAAATAGTCCATGACAATAAC-AAT--------------------------------------- -----------------------------------TTTGAGAT------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------GAGCTTAGTGTAGG---TTGAAAAATATAAAAAAG----AAAACATAATTTTAAATGAATG GATAATAGAGTAAATGGAAATTACTTTTTATTGTA Dog363_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------TTTTTCCAGCTT----TATTGAGGTATAA-TTGACAAATAAAAATTGTATATATTTAAGGTGTACAA C-GTGATGTTTTGATATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTA---------------------- -------------------------------------------------------------------------------- -----------------------ACATATCCA-TCACCTC---------------------------------------A CATAGTTACCATTTTTT-TGTGTGTGGTGAGAACACTTAAGATCTACTCT-CTTAGCAAATTTCAAGTATACAATACAGT ATTATTAACTATAGTCACCATGCTGTACATTAGATCTCCAGAACTTATTCA----------------------------- ----------------------------------------------- >Canis_familiaris AGTATTATTTTATTTTGGCTGGATTCCCAACATTCTGC-TTATCCAGCCTC---AGGCCATGGGGTTCTT---C------ ----------TCCCCCCTCCTTTTT----AATTGAGATATAA-TTAACATAC-ACCATTGTGTAAGTTTGAGGTGTACAG G-GTATTGATTTGATATGTTTAT--ATTGCAAAATGATCGCCATCCCCAGGTTGGCTC---------------------- -------------------------------------------------------------------------------- -----------------------ACACCTCTG-TCCCACC---------------------------------------A TGTAACTATTGTTTCTT---CTAGTAGTGGGAACAATTAAGACCTAATCCTGCCAGCAAGTTTGATGTTTATAATCCAGT TTTGTTGCCAATAATCACTATATTATGTATTAGTTCTCCA--------------AGGCCA----TGGGATTCTA---GAA ACTTCTAAATCAATAGGAAGGAATGGTTTGGAGGTCTGAAGTGGAGG >Felis_catus AGTATTATTTTATTTTGGCTTGACTCCCAACAT------------ACACTC---AGGCCAGGGAGCTCTT---CCTTTTG TTTTATTTTTTGTTTTGTTTTGTTT----AATTGAGATATAA-TCGACATAT-ACCATTGTGTAAGTTGAGGGCGTACAG C-GTATTGATTTGGTACGTTTAT--ATTGCAAAAGAATTGCCGTTGCAAGGTTAGCCA---------------------- -------------------------------------------------------------------------------- -----------------------ACACCTCTGTTCCCATC---------------------------------------A CGCGACCATCATTTCTTCTACTAGGAGTGGCAACAATTCAGGTCTACTCT-GCCAGCAAGTTCGAGGTTTATTATACAAT TTTGTCGCCTCTAATCACTCTACTGTGTGTTAGACCTCCA--------------AGGCCA----TGGGATTCCA---GAA ACTTCTAAATTGGTAGGAAGGAATGGTTTGGAGGTCTGAAGCGGAGG >Manis_pentadactyla AGTATTATTTTATTTTGGCTTGATTCCCAGCATTCCTC-TTATCCACACTC---AGGCCATGGGCTTTAA---------- --------------------TAAAA----AATAGAAATATAA-GTAACATAT-AACGTTGTGTAAGTTTAAGGTGTACAA C-ATAATGATTCAATACATTCAT--ATTTCAGTATAGTTGTCAGTGCAGTCTTGGCAA---------------------- -------------------------------------------------------------------------------- -----------------------GCACCTCTG-TCAGGTC---------------------------------------A CATGATTATCATTTTTT---CTAGTGGTGAGAACGATTAAGATCTATTCT-GTTAGCATATTTAATGTTTACAATACAGT TTTGCTGTGTAAAATCACTGCACTGTGTACTAGATCTCCA--------------AGGCTA----TGGGATTCTT---GAA ACTTCTCAGTTGGTAGGAAGGAATGGTTTAGAGATTTAAAGTTAAGG >Sus_scrofa AGAATTATTTTATTTTGGCTTGATTCCAAGCATTCTGC-TTATCCACACCC---AGACTATGGGATTTTT---------- -------------------TTTTTT----AATTGGGATATAA-TTGATAAAA-ATCTTGGTGTCAGTTTAAGGCATACC- T-GTATTGATGGGATACATTTAT--GTTGCAGTATGCTTGCTATTGTAGTGTTAGCTACGTAATTTTTCTAGGAGAGTTT CTGCTGTGGCTCAGTGGGATTGGTGCTGTCTCTGCAGCACCAGGACGCTGGTTCAATCCCTGGCCCAGCACAGTGGGTTA AAGGATGTGGTGTTGCTGCAGCTGCGGCTCAGATCTGATCCCTGGCCCAGGAATTCCATATGCTGCAGGGCAGCCGAAAA AATATATATATTTTTTTCCCCTAGGAGTGGGAACAATTAAGATCTATTCT-CCTAGCAAGGTTAATGTTTATAATACAGA TTCGTTATCTATAATCACTGAACTGTGTGTTAGATTTCCA--------------AGGCGG----TGGGATTCTT---GAG ACTTCTAAATTGGTAGGAAGGAACGGTTTAAAAGTCTGAAGCTAGGG >Bos_taurus GGAATTATTTTATTTTGGCTTGATTCCCAGAATTCTGC-TTATTTACACCC---AGACCTTGGAGTTCTT---------- ----------------T-TTTGTTT---AAATTGAGATATAA-TCAACAGAA-AGCATTCTAGAAGTTTAAGGTGTGCCA T-A-------TTGATACATTTAT--ATTGCAATATGATTGCCATGGTAGTGTTAGCTA---------------------- -------------------------------------------------------------------------------- -----------------------ACAA----------------------------------------------------- ---AATTACCAATTTTT---TATGTGGTGAAAACAAT-----TCTGTTTT-CTTAGCANNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------------NNNNNN----NNNNNNNNNN---NNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Equus_caballus AGTATTATTTTATTTTGGCTTCATTCCCAGCATTCTGT-TTATCCACACTC---AGACCACTGGGGTCTT---------- ----------------CCCTTTTTT----AACTGAGATATAATTTGACATAT-AACATTGTGTAAACTTAAGATGTACAA C-ATATTGATTTGATACATGTAT--ATTGCAATATGATTGTCTTTGTAGCATTAGCTA---------------------- -------------------------------------------------------------------------------- -----------------------ACACCTCCG--TTCGTC---------------------------------------A CCTAATAATCATTTCTT---CTAGTGGTGGAAACAATTAAAATCTATTCT-CTTAGCAAGTTTAATGTATACGGTCCAGT TTTGTCGTCTATAATCACTGTACTGTGTATTAGATCTCCA--------------AGGCCA----TGGGATGCTT---GAA ACTTCTAAATTGGTAGGAAGGAATGGTTTAGAGTTCTGATGTTGAGG >Ceratotherium_simum AGTATTATTTTATTTTGGCTTCATTCCCAGAATTCTGC-TTTTCCACACTC---AGGCCATGGGATTCTT---------- ----------------CCTTTTTTT----AACTGAGATGTAA-TTGACATAT-AACATTGTGTAAGTTTAACATGTAGAA C-ACATTGATTTGATACATTGAT--ACTGCAACATGATTGCCATTGTAGCTTTAGCTA---------------------- -------------------------------------------------------------------------------- -----------------------ACACCTCTG-TTTTGTC---------------------------------------A CATGATTATCATTTCTT---CTAGTGGTGGGAACAATTAAGATCTATTCT-CTTAGCAAGTTGAATGTTTATAATACAGT TTTGTTGTCTATAATCACTGTACTGTGTATTAGATCTCCA--------------AGGCCA----TGGGATTCTT---GAA ACTTCTAAATTGGTAGGAAGGAATGATTTAGAGGTCTGAAGTGGAGG >Pteronotus_parnellii AGTATTACTTCATTTTGGCTGGATCCCTAGAATCCTGC-TTGTCCGCATGC---TGGCTGCGAGACTGTT---------- -------TTTTGTTTTTTTTTGTTTTTTACATTGATGTATAA-CTGACCTTT-AACACCGTGTAAGTTTAACCTAT---- -------GACCTGATACATTTAT--GCAGTGATAGGATGGCCATTGTAAT----GCTA---------------------- -------------------------------------------------------------------------------- -----------------------ACACCTCTG-TCGTTTC---------------------------------------A C---AGCATTATTTGTT---CTCAGGGTGGGAACAGTAAACATCTATCC--CTTAGCAAGTTTTGCGTTTATAATACTGT CTTGTTGTTTGTAACTATTGTACTTTGTATGA-ACCTCCA--------------AGGCCA----TGGGTTCCTG---GAA ACTTCTAAAGTGGTAGGAATGACCA----AGAGGTCTGAAGTTGAGG >Rousettus_aegyptiacus AGGATTGTTTTGTTTTGGCTCGATGCCCGGCATTCTGC-TCATCCACATGC---AGGCCGCGGGACTCCT---------- -------C-----------ATTTTA----AACACGGGCGTATTTT----TATTGACGTCGCGTGCGTTCGCGGTAGGCGA TGGCATCGATCGGACACACTGAT--ACGGCGGCATGGTTGCCAGCGGAGCGTCAGCGG---------------------- -------------------------------------------------------------------------------- -----------------------ACACCTCCG-TCACGCC---------------------------------------G CGTGACCATCGTCATTCCTTCTCGCGGTAGCAACAGTTAACATCCCTCCT-CTTAGCAAGTTTCGCGGTTACGATCCCGT TTGGCTGCCTGCGATCGTCGCGCTGCGCCGTAGATCTCCA--------------AGGCCGTGCACGGGATTCTT---GAA ACTCCTGGAGTGGCGGAAAGGAATGGTGGAGAGGTTCGAAGTTCAGG >Condylura_cristata GGTATTATTTTATTTTGGCTGAATTCCCAGTATTCTGC-TTCCCCACACCC---AAGCCATGGGATTCTT---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------GAA AATTCTCAATTGGTAGGAAGGAGTGGTTGAAAGAACTGCA-TTGGGG >Erinaceus_europaeus AGTCTTACTTCCCTTTGGCCAGACTCCCAGCCTTCTGTGTCCCCCACGCCC---AGACCCTGGGATTCTT---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------GAA ACTTCTCAGCTGGCAGGAGGAGA------GGAGCTCGGAAGCCCAGG >Homo_sapiens AGTATTATTTTATTTTTGCCTGATTCCCAGCATTCTGC-CTATCCACACTC---AGGCCATGAGGTCCTT---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------GAA ACTTCTACATAGGAAGGAAGGAAGAGTTTAGAAGGCTGCAGTTGAGG Dog364_LINE >L1MA9_3END ------------------------------------------------------------------------------GT GGTAATCATTTCAC-AAT-GTATACGTAT----ATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTG TCAATTATACCTCAATAAAGCTGGAAAAA--------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------- >Canis_familiaris AAAGAATACAGAGCATAGGT----ATGCAGATTCCTCTTTGTATTTTATTT-AAT---AGAAAATC-TGTCCCAA----- ----TCCTTTTCAC-AAT-ATATATATGTATACATCAAATCATCACATTGTACACTTTGAATATCTTACTACTTTAGTTG TCAATTACACCTCAATAAAGCAAGAAAG---------------------------------------------------- -AAAGGAAGAA---AGAAAATTAT-------ATCCCAA---AC----CAAAGACTTGTC-ATAAATCTTG---------- ---TATAAATCAACTTTTGAAC------------------TTCAAAATA >Felis_catus AAAGGAGAGAGAGCACAGGTGTGCATGCAGATTCTCCTGTGTT---------AAT---AGAAAATTATGTCCCAA----- ----CCCCTTTCAC-AAG-GGATATATAG----ACCAAATCATCACAACGTACACTTTAAATACCTTACAATTGTACCTG TCAACAATATCTCAATACAGCTGAAAAA----------------AATCCTAGGAATTAAACTCTTAAAAAGAAAAAAAAA AAAAGGAAGAA---AGAAAATTATG-ATTACATCCCAA---AC----CAAAGACTGGTC-TTAAATCTTA---------- ---TGTAAATCACCCTTTGAAC------------------TTCAAAATA >Manis_pentadactyla CAAGGATCCAGAGCACAC------ATGCAGATTCTCATTTGTGTTTTCATT-AAT---AGAAAGTCATGTCCCAG----- ----TCC-TTTCACAAAT-CTGTACATAT----ATCAAACCATCAACTTATATACTTTAAGTATCTTA------------ ----------------------GGGGGG----------------AACCCTAAGACTTAAATTCTT-------------AA AATATATATAT---ATATATATATATATGATGTCCCAA---AT----CAAAGTCTACTC-TCTCACCTCACA-------T ATCCATAAATGAACTTTCAAAC------------------TTCAAAATA >Sus_scrofa CCAGGATTCAGAGCAGAGCT----GTGCAGATTCTCTTCTGTTTTTTCTTTAAAT---AGAAAATCAGGTCTTAA----- ----TCCTTTTCAC-AAT-GTCAACCTGT----AT-----CATCACAATGTACACTTTAAATGCCTCACAATT----TTG TCAATTTTATCTCAA-GAAGCTAAAAAAAAAACTAAAAAACCCTAGCCCTAGGATTTAAACTCAT--------------- --------------AAAAAA-----------GTTACAC---AT----CAAAGACTCCTC-CTATATCTCACA-------T ATCTATA---CAACTTCTGAAC------------------TTCAACACA >Tursiops_truncatus CAAGGATTCAGAGCAGAGGT----ATGCTGAATCTCTTCTGTATTTT-----AAT---AG---ATTATGTCCTAA----- ----TCCTTTTCAC-AAT-GTACACCTAT----ATCAAATCATCACACTGTACACTACGAATGCCTCACAATTCTATTTG TCAATTATATGTCAA-AAAGCTAAAAAA-----------CAAAAAACCCTAGGATTTAAACTCAC-------------TA AAAAAAAAA-----AAAAACTTAT-------GTCCCAA---ACCAAACAAAGACTTCTC-TTATATCCCATACCCCAGTT ATCTATAAATCAACTTTTAAAC------------------TTCAAAACA >Equus_caballus CAAGGTCATGGAGCGGATGT----CTACGGATGGTCATTTGTGTTTTCTTT-AAT---AGGAAATTATGTCCCAA----- ----TCCTTTTCAC-AATGGTATACATAT----ATCACGTCATCATGTTGTATGCT-TAAATACCTTACAATTCTATTTG CCAGTTATACCTCAATAAAGCTGAGAAA---------------AAAATGTAAGATTTAAACTCTT--------------- --------------AAAAAATTAT-------ATTCTAA---AC----CAAAGAA--CTC-TTATATCTCACA-------T ACCTATAAATCAACTTTCGAAG------------------TTCAAAACA >Ceratotherium_simum AAGGGCCATGGAGCAGACGT----CTGCAGATTATCATTTGTATTTTCTTT-AAT---AAAAAATTATGTCCCAA----- ----TCCTTTTTAC-AGT-GTATACATAT----ATCAAATCATCACATTTTACACT-TAAACACCTTATAATTTTATTTG CCAATTGTACCTCAATAAAGCTGAAAAA----------------AAACTTAAGATTTAAACT----------------CA AA------------AAAAAATTAT-------GTTCCAA---AT----CAAAAAGTTCTC-TTATATCTCACA-------T ATCTATAAATCAAATTT-GAAG------------------TTCAAAATA >Myotis_myotis CAAGAATACGGAGCAGATAT----AGGCAGATGCTCTTCAGTGTTTTCCTT-CAT---GG-AAATTATGTCCCAA----- ----TCCTTTTCAT-AGT--TATACAAAT----ATCAAATCATTATGTTGTACACTTTAAATGCCTTACAAGTCTATTTG TCAATTCTATCTCAATAAAACTGAGGGG---------------AAACCATAGAATTAAAGCTCAT-------------TT AAAAAGAAA-----ATAAAATTAT-------GTCCCAA---AC----CAAAGATTTTT------ATCTCACA-------T ATCTGTAAATCAACTTTCAAAC------------------TTCAAA-CA >Rousettus_aegyptiacus NNNNNNNNNNNNNNNNNNNNNNNNNNNCAGATGTTCTTTTGTGATTT-----AAT---AGAAAATTATGTCTCAA----- ----TCCTTTTTAC-AGT-GTATATATAT----ATGAACTCATCATGCTGTGCACTTTAAATACCTTACTATTTTATTTG CCAATTATATTGCAATGTAGCTGGGGGT--TGGGGGGGGGGAAGTACTGCAAAATTTAAGATCAT-------------TA AAAAAGAAAAA---AGAAAATTAT-------GTCCCAA---AT----CAAAGACTTCTT-TTATACCTCACA-------T ACCTATAA-----CTTTTGAAT------------------TTCAAAATA >Condylura_cristata CAAGGACACAGAGCAGAATT----ACGCA-ATTCTCATCTATGTTTTCTTC--AT------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------AAAAAATCAT-------GTCCCAA---AA----CAGTAACTTCTCTTTACATCTTGCT-------T TGCTATCAATCA-CCTTTAAGC------------------TTCAAAACA >Uropsilus_gracilis AAAGGACAGAGAAGAGATGT----ATGCAAATTCTCATCCATTTCTTCTTC--AT------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------AGAAAATTAT-------GTCCCAA---AT----TCATGCCTTCTC-TTACATCTTACT-------T AGCCACCCATCA-CCTTTAAAT------------------TTCAAAACT >Homo_sapiens CGCAGATGCAGAGCAGATGT----ATGCAGGTTCTCACTTGTATTTTCTTT-AAC------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------AGAGAATTGT-------GTCCCAA---AC----CA--GACTTCTC-TTATATCTCACC-------T ATCTGAAAACGAACTTTTGAACTTAGAAAAAACTAACTTTTTCAAGATA Dog366_LINE >L1_CARN7_3END -------------------------------------------------------------------------------- -----------TTGTGGTGATCACTTCAC----------------------------------------------AATGT ATACAAATGTCG----------------------AA-TCA-CTATGTTGTACACCTGAAACTAATATAACATTGTATGTC AATTATA-CTCAAATAAAAAAA---------------------------------------------------------- -------------------- >Canis_familiaris AAGTCA-CTGTCCAACTTACTTG-TCCAAGCTTCAGGA-----------TGTTTTT----CATTTAT---AAAAGCATTT -----TAA----------------TTCAC----------------------------------------------AATAT ATACAAGTACCT----------------------AA-TTC-TCATGCTGTACGCCTGAAACTAATATAATGTTACACATC AATCATATCTCAA-TAA--------A-AAAGCATTTAA---TCATGAAAACATTTAAGGTGCTTATTCATTTTACCACCA AAAAAAAAAAAACGTTCTTA >Felis_catus AAGTCA-TTGTCCAACTTACTTG-TCCAGGCTTCAGGG-----------TTTTTC-----CACTTAT---AAAAGCATTT ------AA----------------TTCACACA-------------------------------------------AAAAA ATACAAATATCT----------------------AATTCA-TTACGTTACACACCTGAAACTAATATAATGTTATATGTC AATGATATCTCAA-TAA--------A-AAAGCACTTAA---TCATGAAAATGTTTAAGGTGCTTATTCATCTTATCAC-- -------AAAAATGTTCATA >Manis_javanica AAGTCG-TTGTCCAGTTTCCTTTCTCCAGACTTGAGGA-----------TTTTTTT----CATTTAT---GAAAGCA-TT -----TAA----------------TTCACTATGCATATGTGTGTGTGTATATATATATATATACACACACACACACATAT ACACATGTATATATATATATATATATATATGTAGAA-TCA-TTATGCTGTGTACCTGAAACTAACAT--------ATGTC AATTAAATCCAAA-GAA--------AGGAAGCATTTTA---TCATGAAAATACTTAAGGTGCTTATTCATTTTACC---- --------AAAAAATTATCA >Sus_scrofa AAGTCA-TTGCCCAATTTACTTG-TCCAGGCTTTAGAG-----------TTTTTT-----CATTCAT---AAAAGCACTT AATTCTAA----------------TTTGC----------------------------------------------AGCAT ATACAAACATTG----------------------AA-TCA-TTATGTTGTACACCTGAAACTAATGTTATGTTATATGTC AATTATTTGTCAAAATA--------A-AAAGGATTTAA---TCATGAAAATATTTAAGGTGCTTTTCCATTTTAACAT-- --------AAAATGTTCTTA >Bos_taurus AAGTCA-TTGCCCAATTTACTTG-TCCAGGCTTCAGGC-----------TTTCTT-----CATTT-T---AAAGGCATTT ACTTCTGA----------------TTTGC----------------------------------------------AACAT ATATAAACATCA----------------------AA-TCA-TTATGTTGCATACCTGAAACTAATATAATGG-ATATATC AATTATATCTCAATATA--------A-AAATGACTTAC---TCATGAAAATGTTTAAGGTGCTTTTTCATTTTAACAC-- ---------AAAAGGTTTTA >Equus_caballus AAGTCA-TTGCCCAATTTACTTT-CCCAGGCGTCAAGG-----------GTTTTT-----CATTTAT---AAAAGCGTTT ------AA----------------TTTAC-----------------------------------------------AGAT CTACAAATATCA----------------------AA-TCA-CGATGTTAGACACCTGAAACTAATAAAATGTTATATGTC AATTATATTTTAATTAA--------A-AAAGCATTTAA---TCATGAAAATACTTAAGGTGCTTATTCATTGTACCAT-- -------AAAAATGTTCTTA >Ceratotherium_simum AAGTCA-TTGCCCAATTTACTTT-CCCAGGCTTCAGAG-----------GTTTTTT----CATTTAC---AAAAGCATTT ------AA----------------TTCGC----------------------------------------------AGTAA ATACAAATATCA----------------------AA-TCATTTATGTTATACACCTGAAACTAATATAATGT--TACGTC AATTATATCTGAATTAA--------G-AAAACATTTAA---TCATGAAAATATTTAAGGTGCTTATTCATTTTACCAT-- -------ACAAATGTTCTTA >Myotis_myotis AAGTCATTTGAACAACGTATTTG-TCCTGACTTCAGGA-----------TTTTTTT----CATTTAT---GAAAGCATTT ------AA----------------TTTGT----------------------------------------------GAAAT ATACAAACATAG----------------------AA-TCA-TTATGTTACACAGTTAAATCTAATACAATGTTATAT--- -ATTATATCTCAGTTAA--------A-AAAGGAATTAA---TTGGGATAATATTTAAGGTGCTTATTCATTTTGCCAT-- -------TAAAATGTT--TA >Rousettus_aegyptiacus AAGTCA-TTGACCAATTTACTTG-TCCAGGCTTCAGGA-----------TTTTTTTTTTCCATCTAT---AAAAGCATTT ------AA----------------CTTAC----------------------------------------------AATAC ATACAAATATAG----------------------AA-TCA-TTATGTTACACAGCTGAATCTAAGATATTGTTATATGTC AATTATATCCCAA-TGA--------A-CAAACATTTCA---TCATGAAAATATTTAAGGTGCTTATTCGTTTTACTAT-- -------AAAAATGTTCTTA >Condylura_cristata AAGTCG-TTGCCCATTTTATATG-TC-------TAGTG-----------TTTCTTT----CATTTAT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------A-AAAGCATTTCA---TCATGAAAATATTCAAGGTGTTTGCTCATTTAACCAT-- -------AGAAATTAACTTG >Sorex_araneus ATGTAA-TTGCCCAATTAACTTG-AT-GAGCTCTAGGATAT--------TTTCTTTTATTTTTTTAT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------A-AAAGCATTTAA---TTATGAAAATATTTAAGATGTTTATTTTGCTTTCTAT-- -------AAATGTATTCTGA >Homo_sapiens AAGTCA-TTGTCCAACTTACCTG-TCCAGGGACCAGGTTTTTTGTTTTTTGGTTTTTGTTCATTTAA------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------A-AAAGCTTTTAA---GCATGAAAATCTTT-AGATGTTTATTCATTCTACCAT-- -------AAAAATGTCATCA Dog367_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------TTTTTCCAGCTTTTTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTAC AACGTGATGTTTTGATATACG--TATACATTGT----------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----GAAATGATTACCACAATCAAG-CTAATTAACATATCCATCACCTCACATAGTTACCA--TTTTTTTGTGTGTGGT GAGAACACTTAAGATCTACTC----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------TCTTAGCAAATTTCAAGTATACAATACAGTATTATTAA CTATAGTCACCATGCTGTACATT----AGATCTCCAGAACTTATTCATCCTGCATAACTGAAACTTTGTACCCTTTGACC AACATCTCC----------------------------------------------------------------------- ---- >Canis_familiaris TTTAAACAAAGGAATTCAATTACCTGAT-CTTTTTATCAAA------ACGTAG----AAAATA---TTAAATGTCCTTAT TTTT--------------------------TTAATTCAGAAATAATTGACATGTAACA-TTGTATAAGTTTCCGGTGCAC AA-ACACGGATTTGATATTTG--TATATATTGC----------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----AAAAACGGTCACCAGGATAAGT-CTACTTAAC--ATCTATCAACACACATAGTTAC-AACTTTTTTTCCTTGTGAT GAGAACTTGTAAGATCTACTC----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------TCCTAGGAACTTTCAAATATACAATAT--TTGTATTAA CTACAGTCACTAGGCCACACCTT----TTATCCCCAGAACGTATTTAT--TTTATAACTGGAAGTGTATACCTTTT---- ------------GTAAATGTCCTCATTTTT---GA--GCTCTAAATCAGTGTGAGTTACTCAGTGTTCATGAATTATTT- GGCA >Felis_catus TTTGAA----GAAACTCAATTACCTGAT-ATTTTTATAAAA------ATTTTT----TAACAA---TTAAATGTCCTCAT TTTT-------------------------TTAAATCAAGAAATAACTGACATGTAACA-TTGTA--AGTTTTGAGTATAC AACACAATGATGCAATATTTG--TATATATTGC----------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AAAATGATTACCACGATTAAGTCTAGTTAAC--ATCCATCACCACACAGAGCTACAAA---TTTTTTCTTGTGAT GAGAACTTTTAAGATCTACTCTCTCGGGCGGGGGCCGGGGGGGGGGGGGGGGGGGGGGGGGTTGCGCCTGTGTGGCTCAA GCATCTGACTTCAGTCAGGTCACGAACTCGAGGTTCGTGGGTTCAGGCCCTGCGTCAGGCTTTGTGCTGACAGCTCAGAG CCTGGAGCCTGTTTCGGATTCTGTGCCTCCCTCTGTCTCTGCCTCTCCCTTGCTCGCACTCTGTCTCTCTCTGTCTCTAT CTCTCAAAAATAAACATTAAAAAAAAAAAAAAAGATCTCTCTTAGGAACTTTCTTTTTTAAAAAAAATTTTTTTTCAACG TTTATTTATTTTTGGGGGGACAGAAAGAGACAGAGCATGAACGGGAGAGGGCCAGAGAGAGAGGGAGACACAGAATCGGA AACAGGCTCCAGGCTCTGAGCCATCAGCCCAGAGCCTGACGCGGGGCTCGAACTCCCGGACCGCGAGATCGTGACCTGGC TGAAGTCGGACGCTTAACCGACTGCGCCACCCAGGCGCCCCATCTTAGGAACTTTCAAATACACAATAT----------- ----AATGACCAGCCTGTACCTT----AAATCCCCAGGACTTAGTTAT--TTTATAACTGGAGGTTTACACCTTTT---- ------------GTAAATATCCTCATCTTT---AAAAAGTCTA----AGCATGAGTTACTCAGTGTTCATAAGTTATTT- GGCC >Manis_pentadactyla TTTGAACACAGGAATGCAATTGCCTCAT-CCTTTTATTAAA------ACTAAA----GAA-AA---TTAA-TGTTCTCAT TTTA------------------------TTTTAGAT---------CTGACATATAACA-TTGTATAAGTTTTAGGTATAC AAC---ATGATTCAATATTTGTATATATATTGC----------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AAAATGATCACCACAGTTAGT-TTAGTTAAC--ATCCATCACCACCCA--------AATTCTTTTTCTTTGTGAT GAGAGCTTTTA---------T----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------TCTCAGAAGATATCAACTATTCAATGCAGTATTATTAA CTATAGTTACCG---------TT----AAATCCCCAGGACTTACTTAT--TTTGTAGCTTGAAGTTTGTAGCTTTC---- ------------GTAAATGTCCTCATTTTT---GAAAAGCCTGCATCACCATGAGTTACTCAGCGCTCATAAGCTATTT- GCCA >Sus_scrofa TTTGAACAAAGGAGTTCAGTTGCTTGAT-CTTTTTATCT--------ATCTTT----AAAAAA-----AAATGCCCCCAT TTTT------------------------TTTTAATTGAGATATCATTGACACGTAACA-TTGTATAGGTTTTGGTTGTAT AAC---ATGATTCTATGTGTG--TGTATATTGC----------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----AAAA----TGATCACAAGAAAT-CTAAATAAC--ATCCATCACCCGGAATAGTTAGAA---CTTTTTTCTTGTGTC AAGAACTTTTAAGATCTATTC----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------TTATAGTAACTTTCCAATATACAGTACAGTAATATTAA CAATAGTCACCATGTTGTACATT----GTATCCCCAGTACTTATTTATAGTTTATAACTGGAAGTTTGTATCTTTT---- ------------GTAAGGGTCCTAATT-TT---GAGAAGCCTAAATCAGCATGAGTTACTCAG-GCTTATAAGCTAGTT- GGCA >Tursiops_truncatus TTTGAACAAAGGAATTTAGTTGCTTGAT-CTTTTTATTAAA------TCTTTT--AAAAAAAA---TTAAATGTCCTTAT TTTT-------------------------AAAACCTGAGATATAATTGACATATAACA-TTGTATAAGTTTTGGGTGTAT AAC---ACGATTCCATATTTG--TATATATTGC----------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AAAGTGCTCACCACTGGAAAT-CTAATTAAC--ATCTATCACCACACATAGTTAT--ACTATTTTTTCTTGTGAT GAGAACTTTTAAGATCTATTC----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------TTTTAGCAATTTTCAAATACACAATATAGTATTATTAA CTCTAGTCACCATGTTGTACATT----ACATCCCCAGGACTTACTTATATTTTATAACTGGAAGTTTGCACCTTTT---- ------------GTAAGTGTCCTATTTTTG---GAAAAGCCTAAATCAGCATGAGTTACTCAGTGCTCACAAGCTATTT- GGCA >Equus_caballus TTTGAACAAAGGAATTCAATTGCCTGAT-CTTGTCATCAAA------ACTTAA--AAAAAAAA---TTAAATGTC---AT TTTT-------------------------TAAACTTGAGATATAATTGACATATGACA-CCGTATAAATTTCAGGTGTAC AACAAAACAATTTGATATTTG--TATATACAGTCATGTGTCGCTTAACAATGAGGATGCATTCTAAGAAATGCATCATTA GGCAATTTCCTCATTGTGTGAACATCATAGAGTGTACTTACAGAAGCTGAGATGTTGTAGCCCACTACA-CACCAGGCTA TGTGGTACTAATGTTATGGAACCTCTGTCGTTCATATGGTCTATTGTTGACCGAAACGTTATTAT-----------GTGG CACACAAAGTGATCACCACACTGAGT-CTAGTTAAC--ATCCATCACAACATATAGTTAC-AATTTTTTTTTCTTGTGAT GAGAACTTTTAAGATCCACTC----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------TCTTAGAAACTTTCAAATATACAATACAGTCTTA-CAA C------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---- >Ceratotherium_simum TTCGAACAAAGGAATTCAATTGCCTGAT-CTTTTTATCAAA------ATTTAA---AATAAAA---TTAAATGTCCTCAT TTTT-------------------------TTAAATTGAGATATAATTGATATATAACA-TTGTATAAGTTTCAGGTGTAC AACATAATAATTTGATATTTG--TATATACAGTCACGCGTCACTTAACGATG-GGATATGTTCTAAGAAATGTGTCATTA GGC----------------------GTTAGAGTGTACTTACACAAACCTAAATGGTGTAACCCACTACACACCTAGGCTG TACAGTACT--AATCTTAGGACCACTGTCATAGATGCAGTCTATCATTGACCAAAATGTGGTTATGCGGCGCATGACTAC ATTGCAAAATGTGCACCACACTTAGT-CTAGTTAAC--ATCCATCATCACATATAGTTACAAATTCTTTTTAATTGTGAT GAGAACTTTTAAGATCTACTC----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------TGTTAGCAACTTCCATATATACAATACAATNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---- ------------NNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNN >Myotis_myotis TTTGAACAAAGGAATTCAATTGCCTGATACTTTTTATCAAA------ACTTTT----AAAAAA---TTAAATGTCTTCAT TTTT--------------------------TAAATTGAGAT---------ATATGACA-CTGTATAAGTTTCAGGTATAC AAC--AAAAATACAATATTTG--TATGTTGTGT----------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AAAAGGATCACCACAATGAGT-TCAGTTAGC--ACTCATTACCACACATGCACAT-----TTTTTTTCTTGTGAT GAGAACTTTAAAGATCTACTC----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------TCTCAGAAACTTTCAAATGTACGATACAGGATTATTAA CTATAGTCACCATGCTGTACGTTAATGACATCT-CAGGACTTACTTAT--TTTATAACTGGAAGTTTGTACTTT-T---- ------------GTACATGTCCTCATTTTT---GAAAAGCCTAAATCAGCATGTGTTTCACAGTACTCATACGCCATTT- GGCA >Rousettus_aegyptiacus TTTGAACGAAGAAATTCAATTGCCTAAC-CCTTTTATCAAA-AAAAAATTTTGT-------AA---TTAATTGTCT--AT TTTT--------------------------TAAATTAAGATATTATTGTTATATAACG-TTGTATAAATTTCAGGTGTAC AACATAATGATTTGGTATTTGT-GATATTT-------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------GT-CTAATTACC--ATCCACTATCACACATAGGTACAAA--TTTTTTTCTTGTGAT GAGAA-GTTTAAAATCT---C----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------TCTTAGAAACTTTCAAATATACAATACAGTATTATTAA CTATAGTCACCATG-TGTATATTAATTACATCTTCAGGTCTTACTTGT--TTTATAACTGGAAGCTTATACCTTTT---- ------------GTAAATGTCCTTATTTAT---AAAAAGCTTAAATCAGCATGAGTTACATAGTACTTATAAGCCATTTG GGCA >Condylura_cristata TTTGAACACAGGAATTCAACTTTTTGGATCCTTTTATCAAATTAAAAATTTACTTTAAAAAAT---GCAAATGTTCTTAT TTTT---------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------G-AAAGCTTAAATCAGCATGAGTTATTCAGTTCTCATAAACT----- GGCA >Solenodon_paradoxus TTTGAACAAAG-AATTCAAGTATCT----------ATCAGAA-----AGTATT----AAAAAT---TTAAATGACTTCAC TTTT---------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------GAAAAGCCTAAGTCTGTATGAGTTACTCAGTGCTCATAAACGAT--- TTGA >Homo_sapiens TTTGAACAAAAGAATTCAATGACCTGAT-CTTTTTAACAAA------ATT-------AAAAAT---TTAAATGTCCTCAT TTTT---------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------GAAAAACCTA-------------AACTCAGTGCTCATAGGTTATTT- GGCA Dog368_LINE >L1_CARN7_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------TTTTTTTATTTGAGTATAATTGACATACAATGTTATATTAGTTTCAGGTGTACAACAT-AGTGATT CGACATTT-GTATACATTGTGAAGTGATCACCA----------CAATAA-GTCTAG-TTACCATCTGTCACCATACAANG TTANTACAATATTATTGACTATATT------------------------------------------------------- ---------------- >Canis_familiaris TTAGTTTTTACGCTGGCAGAATTAC------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------AGTATTTCATGAGAAAATTCT----- ------------------TTGG---TTCCCTAAATTATATGT------------------------GTGTGTTTATGGGT TGTTCAGGATAAATTGTATGTGTGTGTTTATAATGGACATATTACATTATAACAATTTCAGTTGTATAATGT-AATGATT CAATATTTAATATGTATTGTGAAATGATCACCA----------TAACAG-ATCTAG-TTAACATCTATCACCAAAAA--- TACTTAC---TTTTTTTTT---------TTGCTTAAATTAGTTTT---AATTATGTATTCAACCT----------GCAGA TAGAAATATATTTTGT >Felis_catus CTAGTTTTTACACTGGCAAAATTAG------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------AGCATTTCATGAGATAAACCT----- ------------------GTGG---TTCCTTAAATTTTGTGT----------------GTGTGTGTGT-----------T AACATGCCTCTTTTTTTTTAAGTTGAGGTACAATGGACATACAACATTATAACAATTTCAGTTGTACAACAT-AATAATT T-ACATTT-ATATGTATTTTGAAATGATTACCA----------CAACAA-ATCTAG-TT-----------CCAAGCA--- TATTTAC-ATTTTTTT------------TTGCCTAAATTGGTTTT---AATTGTGTCTTCAAACCAGCAGCTTTGACAGT TAGAAATGTATTTTGT >Manis_pentadactyla CAGGTTTTTCCACTATCAAAATTAG------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------AGTGTTTAA--AAGTAAATAT----- ------------------TTTG---TTCCCTAAATTGTGCTT-----------------TTTATAGCC------------ ------------TTTTCTTTAATTGAGGTACAATTGACA-ATAACATTATATTAGTTTGAGTTGTACAACAT-AATTATT CAGTATTT-GTATATATTGTGAAATGATCACCA----------CAATAA-GTCTAG--TAACAACCATTACCAAAC---- -ATTTGCAATTTTTTCTTT---------TCACCTAGATTGGTTTT---AATTGCATATTCAGACCAGCAGCACTGGAAGA CGGACATGTATTTTCG >Sus_scrofa CTAGCTTTTCTGCTGGCAAAATTAG------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------TGTTTCATGAAGTAAAACT----- ------------------C--A---TTTCCTAAATTATGTTT---TTGGCTTTTTTTTTTTAACATGC------------ ---TTTCTGTTTTTGTTTTTTATTGAAGTATAATCGACA-----CATTACATTAGTTTCAGGTGTACAACAT-AATGATT TGATCACC---ACAAATTTTATAGTTAACAATAGTCTAATAGTTAACAA-GTCTAG-TTAAGATCTGTCAAGA------- CATTCACAACTTTTTTT-----------TACCCTAGATGT-TTTT---AATTGTATATGCAGACCAGCAT-TTTGGAATA CAGAAATGTGTTTTGG >Tursiops_truncatus NNNNNNNNNNNNNNNNNNNNNNNNN------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------NNNNNNNNNNNNNNNNNNNNN----- ------------------NNNN---NNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNTGCTCG------------- -------------TTATTTTTA-TGAGGTATAAT-GACAAAGTACATAGTA-------CAGGTGTACAACAT-AATGATT TGATCACA-CAAAATGTCTAGTAACAGTACTTAGTCTAATAGGTAACAATGTCTTG--TTACATCT-TCAATGAACA--- TATT-ACAATT-----------------TTGGCT-AATTTGTTTT---AA-TGTATATTCAGACCAGCAG-TTTGGAAGA TAGAAACATATTTCGG >Equus_caballus CCAGTTTTTCCACTGGCAAAATTAC------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------A-TATTTCATGAGGTAAATAT----- ------------------TTGG---TTCCAAAAACTGGTTTT-----------------TTAATACAC------------ ------------CTTATTTTAATTGGGGTATAATAAACATATAACATTATGTTTGTTTCAGTTGTATGACAT-AATGATT CAATATTT-GTATATATTGTGAAGTGATCACCA----------CAATAA-GTCTAG-TTAACATTCATGACCAAAC---- -ATTTAAATTTTTTTTT-----------TTGCCTAAATTGATTTT---AATTGCATATTCGGGCCAGCAGCTTTGGAAGC TAGAAATGTATTTTTG >Ceratotherium_simum CTAGTTTTTCCACTGGTAACATTAG------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------AGTGTTTCATGAGGTAAACCT----- ------------------TTGG---TTCCCTAAACTGTTTTG----------------TTTTACATGC------------ -------------TTTTTTTTATTGAGGCATAATTGACATATAATATTATATTAGTTTAAGTTGTACAACATAAATTAGT CAATATTT-GTACATATTTTGAAATGACCACCA----------CAATAA-GTCTAGTTTAATATCCATTACCAAACA--- TATTTACAATTTTTTT------------TTGCC-----------T---AATTGCACATTCAAACCAGCGGCTTTGGAAGC TAGAAACGTATTTTGG >Myotis_myotis CTAG-TGTTCCACTGGCAAAATTAG------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------AGTGTTTCATAAGGTAAGCCT----- ------------------TTGA---TTTTCTAAATTGTTTGT----------------GTTTATGTGTGTGTGTGTGTTT ACATGCCTTCATTTTCTTTTTATTGAGGTGTTATTGACATATAATATTGTATTAGATTTAATTATACAACAT-AATGATT TGATATAT-GTATATATTGCAAAA-GATCATCA----------CAATAA-GTCTAA-TTAATATCAGTCCCCAAATA--- CTTTTACAAAATATTATTT---------TCCCCAAAATTGGTATT---AATTGCATATTTCAACTAGCAACTTTAGAAGA TAGGAATGTATTTTGT >Rousettus_aegyptiacus NNNNNNNNNNNNNNNNNNNNNNNNN------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------NNNNNNNNNNNNNNNNNNNNN----- ------------------TTGA---CTACCTAA----------------------------------------------- ---CACCTTCATTTTCTTTTTATTGCAGTG-AATTTACATATATTGTTAT--TGATTTGAATTGTACAATAT-AATGAGT CCATATTT-GCATATATTGCAAAATAATCA-------------CAATAA-GTTTAG-TTAATATCTGTCACCAAATT--- TATTTA----TATTTT------------TCTCC-ATATTGATTTT---AATTGCATATTTTGACCAGCAGCTTTAGAAGA TAGAAATATATTTTGT >Condylura_cristata CAAGTTTTCCCACTGATAAAATTAG------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------AGTGTTTCATGAAATAAATCC----- ------------------TTGA---CTTCCTAATTTGTTTTT-------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------AATTTTATGTTAAGAACAGTTTATTTTGAAAA TAGAAATGCACTTTTG >Sorex_araneus TTTAGCTTTCCACAGACGAAATTAG------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------AATGTCTTGTAAAGTAAACCTAAATT TATTTCTAATACTACATGTAGA---CCCCTAAATTTGTCTCT-------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------AATAGTACATGGATAATTGCTACTTTGGAAGA CAGAGATCTATTTTGG >Homo_sapiens CTAGTTTTTCCACTGGCAAAGATAGTGTGGGAAAGAGAGTTTCTGGGGTGCCAGGTGAGTTGGTCTCCCCTGTGTGAGAC ACCCATGGGAAGCCATGGGCGGCCTCTGAGGAGAACAGTCTCCTTATTGCCTTCATGTCTTTATGCCCCTAGAGCATAAC CGCTCAGCGGCGTTCCACAGGTTGCTGGGGGAGATAACACTCCCTTGAAGCAGGGAGTATAATCAAACATTTTGGCTCCT CCTGAAACCCACTCCCACCCGTTTCAGTCCTGATAAGTTGAAGATCTTAGGTAGTTTAGACACACACCTTTGCTCAAGGA AATTCACAGAAACCGCCACTGCTATACATCTTACCGAATGACTCACCAGTTCTCCTTCACTGATTAATCCTTTTCCTCAT CCCTTCCTCCCCTTCCCATCTGCCCTAAGAACAAAGAGCTTGTAAACCAATAAGTTGGGTGGAGCCCGAGAGCTCTGGGC CCTGAGCAAGGCTCCGAAGCTCAGGTCCCCTGGACATGCCTTTTAAACGCTTCTTCTGTCTCTTTCTAACTCCTTTGTCT CCTCCGGACTCGGAGTACCCGCTGGGTGGTGTGGGGCTGGTTTCTCCAACAGATAGTGTTTCATCAAATAAACCC----- -------------------TGC---TTCCCTAAATTGATTTT-------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------AATTGCATATTCAAATCAGCAGCTTTCAAATA TAGAAATGTATTTTGG Dog375_LINE >L1_CARN7_3END --------------------------------------------------------------------TTTTTTTATTTG AGTATAATTGACATACAATGTTATATTAGTTTCAGGTGTACAACATAGTGATTCGACATTTG-TATACA----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------TTGTGAAGTGATC---------------------------------------- --------------------------------------------------------------- >Canis_familiaris TTTTCATGTGAAATTAGTAGCATATTGCTGCAGGTATGTAGGAAGGGCAT---ATGTACACTTTT-------AATATTTG AATATAATTAAGTTATAAC---ATGTTTGTTACAGGTGTACAAGATAATGGCTCCATATTTG-TATATA----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------TTAC------------ATGTACATTTTT---AATTGAGCCAAA---------- GCAAACCCAGA---------AAGAAAGCAAAGCAAGGTTATACCTCTGTCTCCTTTGAGCATT >Felis_catus TCT---TGTGAAATCAATAGCATATTGCTGCAGGTATGGACAAACAGCAT---ATGTACATGTTT-------AAAATTTG GATGTAATTAAGTTATAACATTATATTAGTTACAAGTG-ACAACATAATGATTCCATATTTG-TATATA----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------TTGC------------ATGTACACTTTT---AACTGAGCCAAA---------- GCGAACCCAGA---------AAGAAAGGAAATCAAAGTTATACCAATAACTCCTTCGAGCATT >Manis_pentadactyla TTTTACCATGAAATCAATAGCATGTTGTTGAAGGCATGTATGAATGGCTT---AC---TAC------------------- -------------------------TTCATTTCAGGTGGGTACCATAATGGTTAAA-------TATACA----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------TTGC------------ATGTACACTCTT---AATTAAGCCAAA---------- ---------------------GGAAATATTTCATAGGTTGGA----------------GCATT >Sus_scrofa TTTTATCAGTAAATCAATAGCATTTTGCTGAAGGTATGTAGGAGAGGCAT---AAGGACACTTTT----TTAAAAAATCA GATATAGTTGACATAAAACATTATATTAGCTTCAGGTATGCAACATAATGATTCGACATTTGTTATTTA----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------GTAT------------GTGTACACTTTT---AATTGAGCCAAA---------- GCAAACCCAGA---------AAGAAAGCAAATATAATTTATAACGATGCCTCCTTCAAGCACT >Bos_taurus TTTTCTCATGAAATCAATTGCATATTGCTGAAGGTATATATGATTGGCAT---AAGTACACTTTT-----TAAAAATTTA GATATAGTTGACATATAACATTATATTAGCTTTAGGTGTACAACAGATTGATTCAATACTTA-TATATATATAGTGCATT ACACTTTTTAGAAGTGTGAGATATATATGTACAATATGATATGAGTTACAGGTGAACAACCCAGTGATTCACAAGTTTAA AGGTTATATTCCATTTACCGTTATTATACAACACTGGCTGTGTTCTGTGTGGATAATATATCCTTGTAGCTTATTTTACA CATGATAGCTTGTACTTCTCAACCCTCCACCCCTGTCTTGCCCCCCACCTTCCTCTCCCTACTGGGAACACTAGTTCGTT CTTTATATCTGTGAGTCTGTTTCCTTTATATTATATTCACTGGTTTGTTTTATTTTTTAGATTTCACACATAAGTGATTC ATTATAGTATTTGTCTTTCTCTGACTTATTTATTTATTTATTTTCTGACTTATTTAAATTAACATAATACCCTCAAAGTC CATCTGTGTTACTGCAAAGGGAAAAATTTGC------------ATGGACACTTTT---AACTGAGTCAAA---------- GTAAACCCAGA---------AGGGAGGTAAACGTTGTTTATACCACTGCCTCCTTTGAACATT >Equus_caballus TTTTCTCATGAAATCAATAGCATATTGCTGAAGGCTTTTATTAACGGCAC---ATGTACACTTTT------TTAAATTTA AATATAATTGACATATAACATTATATTAGTTTCAAGTTTATAACATAATGAATTGATATTTG-TATATA----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------CTGC------------ATGTACAGTTTT---AACTGAGGCAAA---------- GCAAACACAAA---------ACGAAAGCAAATATAGGTCATACTAGTATCTCCTTCAAGCATT >Ceratotherium_simum TTTTCTCGTGAAATCAATAGCATATTGCTGAAGATATGTACGAATGGCAT---ATGTACACATTT------TAAAATTTA GATATAA---------------------------------------------TCGATATTTA-TATATA----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------TTGC------------TCATATACTTTA---AATTGAGCCAAATTGAGCAAAA GCAAACCCAAA---------AGGAACACAAATATAGGTTATACTAGTGCCACGTTGGAGCATT >Myotis_myotis TTTTCTCATGAAATTAATAGCATATTGCTGAAGGTATGTATGATTAGCAT---GTGCATACTTTT-----TAAATGTTTA TATAAAATTGACATATAAT-----ATTAGTTTCAAGTGTACAA-ATAACAATTCAGTATTTG-CATATG----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------TTGC------------ATGTACACTT-------CTGAGCCAAA---------- GAAAACCCAGA---------AAGAAAGCAAATATAGGTTGTACCAGTGCCTCCTTCAAGCATT >Rousettus_aegyptiacus TTTCCTCATGAAATAAATAGTGTATTGCTCAAGGTATGGATGAATGGCAT---AGGTATACTATT-----TTAAAATTTA GATGTAATTGACATATAAC-----ATTAGTTTCAGATATACAACATAATGATTTGATATTTG-TATATC----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------TTGC------------ATGTACACTTTC---AACTGAGTCAAA---------- GCAAACCCAGAAAAAAAAACAAAAAAACAAATATAGGCTACACCAGTGCCTCCTCTAAGCATT >Condylura_cristata TTTTCTTATGAAATCAA-GTCATATCACAAAAGGTACATGCAGATCTCAC------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------ACATACACTTTT---CATTGAGTCAAA---------- ACAAACCTAGG----------GAAAAAAACATTTAAGTTATAGCATCTTCCCCTTGAAGCATT >Solenodon_paradoxus CCTTCTCATGAAAT-----TGATATCAT--------------ATTGGCCT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------ACATACACTTTT---AA-TGAGCCAAA---------- GCATACCCAGA---------AAGAAAGCACATATAAAATATGCCAGCTTCTCCCTTAAGCATT >Homo_sapiens CTTTCTCATGATACCA-TACCATATTGCTGAAGATAGGGGTGAATGGCAT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------ACATATACTTTT---AACTGAGTGAAA---------- ACAACTCCAGA---------AAGAAAGAAAACATAGGTTATATCTGTGCCTCCTTGGAGCATT Dog376_LINE >L1_CARN7_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TTTTTTTATTTGAGTATAATTGACATACA--ATGTTATATTAGTTTCAGGTGTACAACATAGTGATT CGACATTTGTATACATT--------------------------------------------------------------- ------------------ >Canis_familiaris GCAAAAGGGTCAAATG-AT------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------ACAAGTTGTCTGAAAAGTTAGATAACTAACAT---AGGATAAG-CT---- -ATTT-------------TTACTGATATATAATTGACATACAATATATTATATCAGTTTCAGGTATACAATATAACGATT TGGCATTTGT----------AGGGATAAAC---------------------------------------------TGTTC CTTAATGCGTTTTCAGAT >Felis_catus ACAAAAAGGTCAAATT-AAGGGGCGCCTGGGTGGCTTAGTTGGTCAAGCGTCTGACTCAATTTTGGCTCAGGTCATGATC TCAGGGTTTATGAGTTCAAGCCCCATGTCAGGCTCTGGGCTGACAGTGTGGAACCTGCTTGGGATTCTCTCTCTCTCTCT TTCTCTCTCTCTCATTCTCTCTTTCCCTCTCTCTCATTCTCTCTCTCTCTCAGAAAATAATAAACTTTTTTTTTAAAGTG ACTTTTAAAAAAAGGGTCAGGGGCGCCTGGGTGGCACAGTCGGTTAAGCGTCCGACTTCAGCCAGGTCACGATCTCGCGG TCCGGGAGTTTGAGCCCCGCGTCAGGCTCTGGGCTGATGGCTCAGAGCCTGGAGCCTGTTTCCGATTCTGTGTCTCCCTC TCTCTCTGCCCCTCCCCCGTTCATGCTCTGTCTCTCTCTGTCCCAAAAAAATAAATAAACATTGGAAAAAAAATTTTTTT TTAAAAAAAATTAAAAAAGGGTCAAATTAAACACGTTGTCTGTAAAGTTAGGTAACTAACAT---AGAGTAAG-CT---- -ATTT------------TTTTTTGAGATATAATTGACACGTA--ACATTATATTAGTTTCAGGTGTACAATATGATTATT TGGCATTTGT----------AGGGATAAACTTATTTTTAA---ACAATATGTAAATTATA-TTTTGAAACAG-TATGTTC CAGAATGTGTTTTCAGAT >Manis_javanica GCAAAAGGGTCAAATT-AT------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------ACAGGTTGTTTGCAAAGCTAGGTAACTAATAT---GGGATAAATATTATT CTTTT-----------TTTAATTGAGATATAATTGATATA---------ACATTAGTTTTATGGGTACAACTTAATGGTT CAATGTTTGT----------AGGGATAAACTNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNN >Sus_scrofa TCAAGAGGGTCAAATT-AT------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------ACAGGTTGT----AAAGTTAG----CCTATAT---GGG-TAAA-TTTA-T TATTA-----------TCTTATTGATATACAGTTGACATATA--ACATGATATTAGTTTCA-----------TAATGATT CAATATTTGT----------AGGGTTAAATTTATTTTTAA---ATACTATGTAAGTTATATTTTTGAAGCAA-TATGTTC AATAATGAGTTTTTAAGT >Tursiops_truncatus GCAAAAGGGTCAAATT-AT------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------ACAGGTTGTCTGCAAAGTTAGGTAACTAACAT---GGGATAAA-GTTATT TATTA-----TTATTATTTTATTGAGATATAATTGACATACA--ACATTATATTCGTTTCAGGTGTACAACATAATGATT CAATATTTGT----------GGGGATAAACTTATTTTTAA---ATACCATGTAAGTTATA-TTTTGAAACAA-TATGTTC AATAATGTGTTTTTAGGT >Equus_caballus GCAAAAAGGTCAAATT-AT------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------ACAGGTTGTCTACAAAGTTAGGTAACTAACAT---TGGATAAA-CTTATT TATTA---TCATTATTTTTTATTGAGATATTATTGACGTATA--ATATTATATAAGTTTCAGGTG-----------GATT TAATATTTGT----------AGGGATAAAC--ATTTTTAA---ACAGTGTGTAAACTACA-TTTTGAAGCAATTAAGTTC AATAATGTGTTTTCAGGT >Tapirus_indicus GCAAAAAGTTCAAATT-AT------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------ACAAGTTGTCTATAAAGTTAGGTAACTAACAT---GGGATAAA-CTTATT TATTT--------ATGTTTTATTGATATATAATTGACAT-----ATAACACATTAATTTCAGGTGTACAACAT---GAGT CAATATTTGT----------AGGGACAAAC--ATTTTTAA---ACAGTGTGTAAATTACA-TTTTGAAGCAG-TATGTTC AATAATGTGTTTTCAGGT >Myotis_myotis GCAAATGAGTCAAATT-AC------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------ACAGGTTGTCTGCAAATTTAGGTAACTAACAT---GGAATAAA-CATTAT TATCA---TCATTATT-ATTATTGATATATAATTAACATATA--ACATTATATTAGTTTCAAGTGTACAACAT-----TT TGATATTTGT----------AG-GGTAAGCTTATTTTTAA---ATAGTATGTAAGTTATA-TTTTAAAATAA-TATGTTT AAT-ATGTATTTTCAGGT >Rousettus_aegyptiacus TCAAAAGGGTCAAATTTAT------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------ACAAGTTGTCTGCAAAGTTAGGTAACTAATAT---GGAAAAAA-C----T TATT--------------------------------------------------------AGATGTACTA--------CT TGATATTTGT----------AGGGATAAACTTATTTTTAA---ATA----GTAAGTTACA-TTTTGAAACAA-TATGTTC AATAATGTGTTTTCAGGT >Condylura_cristata GCAAAGGGATCAAATT-AC------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------ACAGGATGGCTGAAAAATTAGATAAATAACAT---ATGGAAAA-CATATT TTTAA--------------------------------------------------------------------------- -------------------------------------------AAAATATATACATTACA-TTTTGAAGCAA-TATGGTC AATAACATGTTTTTAGAT >Solenodon_paradoxus ACAAAAGGGTTAAATT-AT------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------ACAGGGCATCTAGAAAGTTATGTAACAAACAT---AGAAAAAA-TTCATT TTTAA--------------------------------------------------------------------------- -------------------------------------------AGAGTATGTAAGTTATA-TTTGGAAATGA-TAT-TTC AATA--ATGTTTTCAGGT >Homo_sapiens GCAAAAGGGTAAAATC-AC------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------ACAAGTTGCCTTCAAA-TTAGGTAACTGACAC---AGGATACA-CTTATT TTTCA--------------------------------------------------------------------------- -------------------------------------------ATACTGTATATGCTATA-TTTTGAAACAA-AATGTTC AATAATATATTTTCAGGT Dog377_LINE >L1_CARN7_3END -------------------------------------------------------------------------------- --TTTTT---TTATTTGAGTATAATTGACATACAATGTTATATTAGTTTCAGGTGTAC-AACATAGTGATTCGACATTTG TATACATTGTGAAGTGATC------------------------------------------------------------- -------------------------------------- >Canis_familiaris TGG-TAACTTCAATGTTACTGATGTTATATAT----TGGCAAAGGCAATATTGTT---TAGTAGTGTCTT------AAAA CATT------TTATTGAAATATAATTGACATATAATGTTATATTAGCTTCAGATGTAC-AACATAATTATTTGATATTTG TATG------------------TAGTGGCTT-----------------------------TCTT---AA--TAAATGCTT TCAGTTCTGCCTGAGAGCAAATTGTCATAGAAATTGGC >Felis_catus TGG-TGACTTCAATATAACTGTCATTATACAT----TAGCAAGGGCAGTATTGTT---TAGCGGTGTTTT------AAAA AATT------TCATTGAAGTGTAATTGATATATAACACTATGTTAGTTTCAAATGTAC-AACATAATGATTTGATATTTG TATA------------------TAGAGCCTT-----------------------------TCTT---AA--TAAATATTT CCAGTTCTGCCTGCGAGCAAATTGTCATGGAAATCGGC >Manis_pentadactyla TAG-TGAGTTCAATAAAACTGACATAATATAT----TGGCAAAG-CAGTATTATT---TGGTGTCTTTCT---TTTAAAA AATG------TTATTGAGGTGTAATTGACATATAACACTATATTAATTTCAGGAGTAC-AACATAATGATTCAATATTTG TATA-------------------AATAGCTT-----------------------------TCTT---AA--TAAATATTT GTAGTTCCACCTGAGAGCAAATTGTCATGGAAAATGGT >Sus_scrofa TAA-TAACTTCAAAAAAATTGACTTAAGATAT----TGGCAAAAGCGATAATGTT---TGATGGCGTTCC---------- --TTTTTTGGTTGTTGAGGTATAATTGACATATAAC---ATGTTAGTTTTAGATGTAC-AACATAATGATTTAATATTTG TA----------------------------------------------------------GCAT---TG--TGAGTATTT TTAGATCCAGAGGAGAGAGAATCATCATAGAAATTGGC >Vicugna_pacos TGA-TGAATTCAGCATAACTGACATAAGATAT----ACACAAAAGCAAAATTCTT---TAGTGCTTTTTT---------- --TTAA------ATTGAGGCATAATTGACATATAACATTACATTAGTTT-AGGTGTAC-AACATAATGATTTAATATTTG TGTC------------------TAGTGGCTT-----------------------------CCTT---AA--TAAATATTT TTAGCTCCACCCGAGAGAAAATTGTCATAAAAATTGAC >Equus_caballus TGG-TGACTTCAATATAACTGACAT-ATATAT----TGGCAAGGGCAATATTGTT---TAGTGGCCTTTT-------TAG AATTTTTT--TTATTGATGTGTAATTGACATATAATATTATGTTAGTTTCAGGTCTACAAACATAATGATTCAATATTTG TTTA------------------TAGTGGCTT-----------------------------TTTT---AA--TAAATATTT TCAGTTCTACCTGAAAGCAAATTGTTATAGAAATTGGC >Ceratotherium_simum TGG-TGACTTCAATATGACTGACATAATATAT--ATTGGCAAGGGCAATATTGTT---TAGTGGTCTTTT---TTAAAAA AAATTTT---TTATTGAGGTGTAATTGACATATAACATGATATTAGTTTCAGGTGTAA-GACATAATGATTCAACATTTG TATA------------------TAGTGGCTT-----------------------------TCTT---CA--CAAATATTT TCAGTTCCACTTGAAAGCAAATTGTTATCGAAATTGGC >Myotis_myotis TGA-GGACTTCCATGTAAAACACATCACCCAC----TGCCAAGGGTAATATTGTT---TAGTGGATTTT--------AAA AATTATT---TTAATGATGTGTAATTGACATGTAACATTATATTAGTTCCAGATGTAC-AACATAATGATTCAATGTTTG TATA------------------TAGTGTTTT-----------------------------TCTT---AA--TAAATATTT TCAGTTCCACCTGAGAGCAAATTGTCATAGAAATTTGT >Rousettus_aegyptiacus TGG-TGACTTCAATATAAATCATGTAACATAT----TGCCAAGGGCAATATAGTT---TAGTGGCTTTCT---CTTCTTT AATTGTTTTTTTATTGAGGTA-AATAG--ATATAACATTATATTAGTTTCAGATGTAT-GACATAATGATTAGTTATTTG TATA------------------TAGTGGTTTTCTTAATAAATATTTGTATATAGTGGTTTTCTT---GA--TAAATATTT TTAGTTCCACTTGAGAGCAAACTGTCATAGAAATTGGT >Condylura_cristata CAGTTGACTTCAGTAAAACTGATAAAATACAT----TGTCAAAGTCAATAGTGTC----AGTAACCTTTT---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------AAAATAAACATGT CAAG-TCCACCTGAGAGCAAATTGTCATAGAAATCGAC >Solenodon_paradoxus TGG-TGACTTTAATATAAA-GACAAAGTATAC----TGGCAAGGGAAATACTGTT----AGTGTTTTTCT---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------TAA-TGACTACTT TCAAATCTAACAGAGAGTCAGTTGTCATAGGGATTGAC >Homo_sapiens TAT-TGATGCCAATAGAACTGTCATCATATATTGATTGGCAAGGATGATATTGTT---TAGTGGCTCTTT---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------AAA-TAAATATTT TTGGTTCCAACCGAGAGAATCATATTATAGTAATTGAC Dog379_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------TTTTTCC---AGCTTT----------------------ATTGAGGTATAATTGACA AATAAAA------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---ATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATATAC------------------------GTATACATTGT GAAATGATTACCACAATCAAG-CTAATTAACATATCCATCACCTCACATAGTTAC---------------------CATT TTTTT--------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------GTGTGTGGTGAG--AACACTT------------- --------AAG-ATCTACTCTCTTAGCAAATTTCAAGTATACAATACAGTATTATTAACTATAGTCACCATGCTGTACAT TAGATCTCCAGAACTTATTCATCCTGCATAACTGAAACTTTGTACCCTTTGACCAACATCTCCCCATTTCCC-------- ------------CCACC-CCCCAGCCCCTGGCAACCACCATTCTA-----CTCTCTGCTTCTATGAGTTTGACTTTTTT- --AG--------ATT----------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------CCACATATAAGTGAGATCATGCAGTATTTGTCTTTCTGTGCCTG GCTTATTTCACTTAGCATAATGTCCTCCAGG--TTCATCCATGTTG---TCACAAATGGCAGGATTTCCTTCTTT-TTTA AGGCTGAATAATATTCCATTGTGT--------------------------------------ATATATAC-----CACAT TTTCTT----------------------TATCCATTCATCCGTCGATGGACACTTAGGTTGNTTCCATATCTT-----GG CTATTGTGAATA---ATGCTGCAATGAACATGGGAGTGCAGATATCTCTTC--GAGATACTGATTTCATTTCCTTTGGAT --ATATACCCAGAAGTGGGATTGCTGG-ATCATATGGTAGT--------------------------------------- ------------------------------------- >Canis_familiaris GAAGAGGATATATA-------ACA-TTTCCTGTCTCTCTCCTTATA----CTTATTAGATTT--AAA---CCATAGCTTA TTTTATA------------------ATTATTGT---------------CTTTTTGGTATCATG----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------TTTTTTA----TTTTT----------------------ATTGAGATACAACTGACA TGTAATA------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------TATTAGTTTCAGGTATACAACATAATGATTTGATATTT------------------------GGGTATAGTGT GAAATGATCACCACAATAAAGTTTGACTAAC--ATCC------------AGTTAC---------------------AATT TTTTT--------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------TCTTCTGATGAG--AACTTTT------------- --------AAG-TTCTACTTTCTTAGCAACTTTCCAATATACAATACAATGTTATTAACTATAGTCACTATGCTGGAAAG TATATCCCCAGCACTTACTTATTTT--ATAACTGGAAGTTTGTATCTTTTGACCACCTTTACCCATTTATTTAACCTACC C-----------TCAAC-ACTGTACCTCTGGCAACCAACAATCTG-----TTTTCTGTATCTCTGACTTTGATATTTTT- TAAG--------ATT----------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------CCATATATAAGTGAG--------AGATTTTTCTTTCTCTATCTG ACTTGATTTACTTTACATAATGCCCTCAGGGTCTCCATCCATGTTA---TTAAAAATGACATGGCTTCCTTTTTTAACAA TGGCTGAATGAGATATATTTATAT---------TTTATTTATATCTATATATCTATATATATCTATATAT-----CACTT TTTTTT-----------------------ATCCATTCATCCATTGATGGGCACTTAGGTTGTTTCCATGTCTT-----AC CTGCTGTAAATA---ATGCTTCAAAAAACATGGAGGTGCATGTATCTCTTT--GAGTTAGTGTTTTCATTTCTTTTAGAT --AAATACCCAGAAATG-AATTGCTGG-ATC-------------CACTG---CATCCTTTATT---AAGGCATCCTGGG- TATTTGGAATTTTGGCTAGAATCCATGTACAAACCAA >Felis_catus GAAG---ATATGTA-------ACA-TTTTCTGC----CTTCTTATA----TTTATTAGATTT--AAA---CCACAGCTTC CTTTATT--------------------------ATTATTATTATTATTATTATTATTATTATTATT-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AGGTATGTTTTT----GTTTT----------------------ATTGACATATAATTGACA TATGATA------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------TATTAGTTTCACATGTACAACACAATGATTTAATATTT--------------------------GTATATTGT AAAATGATCACCGCAAT-AAGTTTAGCTAAC--ATCCATCACCACACATAGTTAAC--------------------AATT TTTTT--------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------TTCTTGTGATGAG--AACTTTT------------- --------ACG-ATGTACTCTCTTAGCAAGTTTCAAATATATAATACAG-ATTATTAACTATAGTCACCATGCTGGACAG TACATTACTAGGACTCACTTACTTT--ATAACTGGAAGTTTGTACCTGTTGACCACCTTTACCCGTTTCATGCCCTCCAC CC----------CCACT-ACCCTACCTCTGGCAACTACCAATCTG-----TTTTCTGTATTTATGACTTTGACCTTTTT- TAAG--------AAT----------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------GCACATATAAGTGAG--------ATATTTGTCTTTCTCTATCTG ACTCATTTCATTTCCCATAATGCCCTTGGGGTCTCCATCCATGTTG---TCTAAAATGGCATAGCTTCCTTCTTT-TTTA TGACAGAATAATATTCCATTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT------GTGTGTAT-----CACAT TTTCTT----------------------TACCCATTCATTCATTAATGGATGCTTAGGTTGTTTCCATGTCTT-----AG CTAATGTAAATA---ATGCTTCAATGAACATAGG-GTGCACGTGTCTTTTT--GAGTTAGTA-TTTCATTTCTTTTAGAT --AAATACCCAGAT------TTGCTGGTATC-------------CACAT---CTTCCATTATT---AAGGCATCCTGAA- TATTTGGAATTTTGGCTAGAATTCTTGTGCCAACCAA >Manis_pentadactyla GAAG-AGATAGAAAGGGTGTACCA-TTTTCTGCCTCTTTCTTTATA----GTCATTAGATTT--AAA---C---AGCCTC TTTTATT------------------ATTACTGT------------------TTTCATATCAT------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------TTTTTTGGTTGCTTAT----------------------ATTGACATATAACTGACA CATACCA------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------TAATAGTTTCAGGTGTACAACATAATGATTCAATATGT------------------------GTAGGTATTGT GAAATGATAACCAC----AAGTTTAGCTAAC--ATCTATCACCATAC--AGTTACA--------------------ATTT TTTTT--------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------TCTTGTGATGAG--AACTTTT------------- --------AAG-ATGTACTCTCTTAGCAACTT-CAAATACATAACACAG---TATTAACTATAATCACCATGCTGGATTT TACATCCCCAGTACTTATTTATT----ATAACTGGAAGTTTATACCTTTTGACCACCTTCACCCATTTCATCC------- ------------CCTAT-CCCCTTCCTTTGGCAACCACCAATTCT--------------TTTTTGTTTTTCCTTTTTTTT TTTA--------ATT----------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------CCACATACGAATGAGATCACACAGTTTTTGTCTTTCACAGTCTG TCTTATCTCACTTTGCATAATACTATCAAGG--TCCATCCATGTTGTCATCACAAATGGCAGGANNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------NNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Sus_scrofa GAAGAAGATATAAAGGATATTAAA-TTTTCTGCCTATCTTTTTATA----CTTA---GATTT--AAA---C-ACAGCTTC CTTTGTT--------------------------------------------TATGGTATCATATTT-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AAAG-TTTTTTA------AAA----------------------ATTGAGATATAATTGACA TTTAACA------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----TTACACTAGTTTCAGGTGTATAGTGTAACACTTCAGTATAT------------------------GTGTATATTAT GAAATGATCACCAC----AAGTTTAGTTAAC--ATTCATCACCACATATAGTTACA--------------------AATT TTCTT--------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TTTATTGTTGTAAG--AACTTTT------------- --------AAAGATCTACTTTCTTAGCAACTTTCAAGTATATAAT-----ATTATTAATTATAGTCACCATGCTGTGCAT TACATCCTCCTGACTTATTTATTTT--ATAGCTGGAAGTATGTGCCTTTTGACTACCTTCACCCATTCCCTCCATTCCAC ATCTCCCCACCATCCCA-CCCTTGCCTCTGGCAACCACCAATCTAATCTGTTCTCTGTATCTGTGAGTTCAGGTTTTTTG TTTGTTTGTTTTATT----------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------CCACATATAGGTGGGATCATTTGGTATTTGTCTTTCT-TGTCTG ACTTAGTTTACTTAGCATAATACCTTCCAGG--TCCATTCATATTG---TCACAAATGTCAGGAACTCCTTTTC-----A TGGCCAAATAATATTCTGTGGT----------------------------------------ATATATAC-----CACAA ATTCTC----------------------TATCCATTCATCTGTTAATGGGCAATTAGGTTGTTTCTATATTTT-----AG CTACTGTAAATA---ATGCTGCAGTGAACATGGGGATGCAGGTATCTTTTA--------GTGTTGTAGTTTCATTCAGAT AAAAATACCCAGATGTGGAATCGCTGA-ATC-------------TGTAG---TTTCCTTTATT---AAGGCATCCTGAAG GAATTGGAATTTTGACTGGAGTCCTTGTGCAAACCAA >Bos_taurus GAAGAGGATATAAAGGATATAACA-TTTTCCAC--CTCTCTTAATA----CTCCTTAGATTT--AAA---T--CTGTTAT TATAATT--------------------------------------------TTTGGTATCATGTTG-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------TTATGTTTGTTT----TTTAA----------------------ATTGAGATATAATTGACA CATAACACTATTCTTGTTTCAGGCTTCCTAGATGGTGCTATTGGTAAAAAATCTGCTTGCCAATGCAGGAGATGCAGGAG ACGCGGGTTCTATCCCTGGGTCTCCAGGGAAGATGCCCTGGAGAAGGAATGGCAACCCACTCCAGTATTCTTGCCTGGAA AATTCCACAGACAGAAGACCTTGGTGGGCTATAGCCCATGGGGCCGCAAAGAATAGGATACGACTGAAGAGATTGAGTAC ACGCTCATTCTTGTTTCAGGTGTATGACATAA---TTCAATATGT------------------------GTGTATACTGT GAAATAATCACCACAAG-AAGTTTAGTTAAC------ATCACCATATATAGTTGCATTGTAAGAACTTCAAAGATTTATT CTCTTCAGTTCAGTTCAGTTCAGTCGCTCAGGCATGTCCGACTCTTTGCAACCCCATGAATCGCAGCACTCCAGGCCTCC CTGTCCATCACCAACTCCCGGAGTTCATTCAAACTCACATCCATTGAGTCGGTGATGCCATCCAGCCATCTCATCCTCTG TCATCCCCTTCTCCTCCTGCCCCCAAACCCTCCCAGCATCAGGGTCTTTTCCAGTGAGTCAACTCTTTGTATGAGGTGTC CAAAGTACTGGAGTTTATTCTCTTAGCAACTTTCAAATATACAGT-----GTTATTAACTATAGTTACTGT--------- TACATCCCCTGG-CTTATTTATTTT--ATAACTTAAAGTTTGTGCCT-TTGACTACCTTCATCCATTCCCCTCATTTCAC ATCTTCACCCTACCCCCACCCCCATCTCTGGCAACCACCAGTCAAACCTGTTCTCTGCATCTGTGAGTTCAGGTTTTTTG TTTGTTTGTTTTATTCCACATATATGTGTGCATACTCAGTCACTCAGTTGTGTTGGAGATTTTGCAACCCTATGGACTGT AGTCCACCAGGCTCCTCTGGCCACTGGATTCTCCAGGCAAGAATACTGGTTGCCATGTCCTCCTCCAAGGGATCTTCCTG GAGGAAGATTGAATCCAGGGTCTGCCGCATGGCAGATGGATTCTTTACTGTCTGAGCCACTAGGGAAGCCCAAGAATATT GGAGTGGGTAGCCTATTCCTTCTCCAGGGGACTTTCCCAACCCAGGGATCAAAGCCTGGTGTCCTTTGTCTTCTGCATTG GCAGGTGTTTCTTTACCACTGAACCACCTGGGAAGCCCACATATAAATGATATCATATGGTATTTGTCTTTCT----CTA ACTTATTTCACTTAGCATAATACCCTCTAGG--TCCATTCATGTTG---TCATAAATGGCAGGAATGCCTTTTTT----A TGGCCAGATAGTATTCTGTGGT----------------------------------------ATATATAC-----CACAA ATTCTC----------------------TATCTGTTC---CATCGATGGGCACTTAGGTTGTTTCTGTATCTT-----AG CTACTGTAAATA---ATGCTGCAATGAACATGGGAGTATAGATATCTTTTT--GAG---ATATTTTTGTTTCCTTCAGAT AAAAATACCCAGATGTGGAATTGTTGG-ATC-------------TGCAG---CTTCCTTTATT---AA-GCACTCTGAAA GAATTGGAAGTTTGCCTGGAATTCTTGTGTAGACCAA >Myotis_myotis GAAAAGAATATAAAGCTTGTAACA-TTTTCTGCCTCTTTCTAAGGGAAATCTCATTAGATTT--AAA---C-AAAGCTTT CTTTATT--------------------------------------ATTATTTTTGGTATCATGTA--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------TTTTTAA-------------------------------ATTTACATATAATTGATA TATAATAT------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---AACATATTAACTTCACATATACAACATAATGATTCAATATTT------------------------GTATATATTGG AAAATAATCACAAA----AAGTCCAGTTAAT--ACCCATTACTGCCCAT------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------GGGAG--AACTTTC------------- --------AAG-ATACACTCTTTTAGCAACTTTCAAATATACACTACAGTATTATTAACTCTGGTCACCATGCTGTATGT TACATCCTTATGATTTATTTATTTT--GTAAC--AAACTTTGTACCTTTAGACCACCTTCTCCCATTTTGCCCACCC--- ------------CATAC-TATCTGCTTCTGACAACCATCAATTAA--------------------------ATTTTTTTT AAAG--------ATT----------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------CTACATATAAGTGAAATCATACAGTATTCCTCTTTCTTTGTTTG ATTTATCTCATTTAGCACAATGCCCTCAAGG--TCCATTCCTGTTA---TTGCAACATACAGTTTATTCTTGTATAATTA TTTATTAAT--TATTGTATTATTTGCC-----------------------------------ATATGTACAACTGCAAAC CTACTTTTGCATCACCATGTGAGATAGATATAGATATATCTATAGAT--ATATCTATATCTATCTCACATCTTCATTCAT TTACCATGGACATTTATGATGCAATGAACATGGGGGTGCAGATATTTTTTTTCGAGTTACTA-TTTTGTGTCCTTTGAAT --AAATTCTCAGAAGTAGAATTGCTGT-ATC-------------CACAG---TGTCCTTTATT---AAGGCATCCTGAAA GAACTGGAAATTTGGCTGGAATCCTTGAGAAAACCAA >Rousettus_aegyptiacus GAAGCGGATATAAAGGAACTAACA-TTTTCTGCCTCTTTCTAAAGGAGATTTCATTAGATTT-AAAA---C--TAGCTTT TTTAATG---GAATATTACTCAGCCATAAGAAGAGATGAAATACTGCCATTTGTGACAACATGGATGGACCTCGAGATAA TTATGCTAAGTGAAATAAGCCAGATAGAAAAAGTTGAAAATCACATGATATCACTTATCTGTGGGGTATAAACCTAAAAG CAACAAATGAACAGGACAAACAAACAGAGACTCATGGACATAGACAATAGACTAGTGGTTACCAGAGAGTAGAGGGTAGG GGAGGAGGGAGAAAGTAGATGGGGTAAAGGGAGTCAAATATGTGGTGACAGGAAGAAATCTAACTATGGGAGGTGAACAC ACAATATAAATGTATATGCCTTACCGTTAAAATATACAGCTGAAACTTATTGGATTTTGTTAACCAATGTCACCGTAAAA ACAAACAAAAAACCCCAACATAGCTTTCTTTATTATTATTGTTTTCGGTACAATTGTTAAAAATTGAGATATAATTGACA TGTCACC------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------TATTAGTTTCAGGTGTACAACATAATGATTCTATATTT------------------------GTATATATCAT GAAATAATCATCACGAA-AAGTTTAGTTAAT--ATCCATCACCACAC--AGTTAGA--------------------AATT TTTTT--------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------TCTTGTGATGAG--AACTTTT------------- --------AAG-ATACACTCTTTTAGCAACTTTCAAATATACACTATGGCATTATTAACTATGGTCACCATGCTGTATAT TACATCCCCAGAATTTATTTGTTTT--ATAACTGGAAGTTTGTATCTTTTAATTACCTTCACCCATTTTGC--------- ------------TCACCCCTCCCAATCCCAGCAACCATCAATTAAAAGA-------ATATATATATATATATATATATAT TTAG--------ATT----------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------CCACATATAAGTGAGGTTATGCAATATTTATCTTTCTCTGTCCG ACTTATCTCATTTAGCATAATGCTTTCAAGG--TCCATCCATGTTT---TTGCAAATGGCAAGATTTCCTTTTTT----A TGGTTGAATAATATTCTTACATATATATGTGTGTATATATATGTACATATATATGTGTACATATACATAT-----CACAT TTTCTT----------------------TATCCACTCATTTATTCATGGACACTTAGATTGTTTCCATGATTT-----GG CTACTATAGATG---ATGATGCAGTGAACATGGAGGTGAAAATATCTTTTT--GAGTTAGTATTTTTATTTCCTTAGGAT --AAATACTCAGAAGTAGAATCATTGG-AGC-------------CACAG---CTTTC-TTATT---AAGGCACCCTGAAA AAATGGGAATTTTGGCTGGAATCCTTGTG-AAAACAA >Condylura_cristata GAAGAGGATATAAA-------------ACCTGC--TTTTCCTTATA----CTCATTAGATTT--TAA---T-GTAGTG-C CTTCCCT------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------TCTTTTG----ATTTC----------------------ATCAAGATTT-------- --TAAAA------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------ATATATATAATAGTATATTTTTACAT-----------------------------CATTTTGT GCATT---------------------TTCCC--ATCTCTTGC----------------------------------AATC CCCTT--------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------G--GACTTCC------------- --------------------CATCACCAAATCACCCATGTGCCAT-----------CACCATAGTC-----------CAG TGCATTTCCCTTCCCCTGCTGTTTT------------------------TGATCCCATTCACCCTTCTACC--------- ------------CCCAC-AAAATGTCTCTAGTATATAGCTGTTCA------TCATTATCATTATTTGCTCGCATGTTCCA TCAT--------ATT----------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------CCTGCTATGAGAGAAACCATCTGGTATTTTTCCATTTCTTTCTA GCATGTTTCACTAGGCATGATCTTTTCCAGT--TCCATCCATGTTG---CTGCAAAAGACACG--TTTCTTTTTTTTTGG TTGCTGAGTAATATTCCATAGTGT--------------------------------------ATATGTAC-----CACAT CTTTTT----------------------AATCCAGTCATCCACTTTTGGGCATTTGGACTGTTTCCATGTCTT-----TC CAATTGTGAATA---AAGCAGCAATAAACATGGGGGTGCAGGTATCTTTTT--GAATCAGTGCTTTTGTGTCTTTTGGGT --AGATACCTAGGAGTGGGATTGCTGG-GT--------------CATAGGGAAGCTCCATGTT---AAG-CAGTTTGAGG AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Scalopus_aquaticus GAAGAGGATATAAA---------A-TCTTCTGC--CTTTCTTTATA----CTCATTAAATTT--TAA---C-ATAGCT-C CTTCACT-----------------------------------------CCTTTTGATTTCATGCAG-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------A----TTTTTTG------TTT----------------------ATTGAGATTCAATTGACA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------TATTAGTTTAAGGT----AATATAATGACCCTGTTTGTCTCTCTCTGCCTCTCTCTCTCTCCATCTATCTTGT GAAATGATCACTGCAAT-AAGTCTAGTTAAC--ATCCATCACCACACATATTTACA--------------------CATT TTTTT--------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------CTTGTCATGAG--AACTTTT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------TTTTTT- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------AATATTCAT------------- ---------------------------------TGCATATATGT------------------------------------ ---------------------------------------------------------------------------CACAT TTTCTT--------------------------TGTTTACTTGTTGATGGATTTTTGTATTGTTTCCATGTCTT-----GG CTGCTATGAACA---ATGCTTCAGTGAACACAAGAGTATAGCTATCTCTTT--GAGCTAATGATTTTGTTTCCTTGG--- --ATGTACCCAGAATTGCGGTTGCTGG-AT--------------CAGATGGTAGTTCTATTTT---NNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Equus_caballus GAAGAGACTACAAAGGATGCAACA-TTTTCTGC----CTCTTTATG----TTCATTAGATTT--AAA---C-ACAGCTTC CTTTATT------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------AAGGCATTCAGAAA AAATTGGAATTTTGGCTGGAATTCTTGTGCAAAACAA >Ceratotherium_simum GAAGAGGATATAAAGGATGCAACA-TTTTCTGCCTCTTTCTTTATA----TTCATTAGATTTAAATA---C---AGCTTC CTTTATT------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------AAGGCATTCAGAAA AAATTGGAATTTCGGCTGGAATCCTTGTGCAAAACAA >Homo_sapiens GAGGAGGATATAATGAATATAACATTTTTCTGCTTCTTTCTTTATA----CCTATTAGATTT--AAA---C-ATAGCTTT CTTTATG------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------AAAGCATTCTGAAA GAATTGGAATTTTGGCTGTAATCTTTGTGCAAGCCAA Dog383_LINE >L1MA9_3END -------------------------------------------------------------------------------- ------TTTTTCCAGCTTTATTGAGG-TATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTT GATATACGT---------ATACAT---TGTGAAATGATT----ACCACAATCAAGCTAATTAACATATCCATCACCTCAC ATAGTTACCATTTTTT------------------TGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAAATTTCA AGTATACAATACAGTATTATTAACTATAGTCACCATGCTGTACATTAGATCTCCAGAACTTA-TTCATCCTGCATAACTG AAACTTTGTACCCTTTGA-------------------------------------------------------------- ------------ >Canis_familiaris AGTAAATGTGTGAGTACAGGTGGTGGTTTGAAATGTTCTTTAGTA-------AG---TTCCAGATTGTCTTTCC----TG AAAAATTTATTTCAGCTTTATTGAGG-TATAATTGGCATATAAAACTATAAGATATTTAAAGTGCACATTGTGGTGTTTT GATACAA-----------AGATAT---TGAGAAAGATT-----CCTTCCATCTAGTTAATGAACATATCCATCATCTCAC ATTTTTATTCTTTTGT--------------------------GTGAGAACATTTAAGTTTTACTTTGTTAGCAAATTTCA ATAATACAACACACTGTTATTAGCTGTAATCACTGTGTTTTACAGAAGATCCTCAGCCTTTA-TCCATCGT--GTGGTTG CAAGTTGG-------------TACAAGCTGGTCCTAAC---CTCACAGTCCCAGCATATG-CCACAGC----AGGTGCCA GTGGGACCTCAC >Felis_catus AGTAACTGAATGAGTGCAGATACTGGTTTGAAATGTCCTCTAGTAA------AG---TCCCAGCTAGTCTTTTC-----T GAAAATATATTTCAGCTTTATTGACG-TGTAACTGACATAGAAAACTGTAAGATGTTTAAAGTGCACAC--TGGTGCTTT GATACACATATACCACACGTATAT---CGTGAAAGATT-----CCTTCCATATAGTTAACT----TATCCATCACCTCAC ATGTTTATTATTTTTT------------------------TTGTAAGAACATTTAAGTTTTACTCTGTGAGCATATTTCA ATCATACAACACACTGTTATTAGCTATAATCACCAGGTTTTACATCAGCCTCTCCACCTTTA-TTCATCTC--GTAACTT CAAGTTTG-------------TACAAGCTCATCTTAAG---GTCACGGTCCCAGGATATG-CCACAGC----AGGTGCCA GTGGGACCTCCC >Manis_pentadactyla GGTAATTGAATGAGCACAGATATTGCTTTGAAATGTCCACTAATAAGGAGTAAG---TCCCAGAGAGCCTTTTT---CTT TTTAATTTATTTCAGGCTTATTGAGA-TATTACTGACATATAAAATTATAAGATATTTAAAATGCACATTGTGATGTCTT TGTATATGT---------ATACGT---TGTGAAAGGATT----CGGCCCATTCAGTTAATGAACACATCTGGTACCTCAT GTATTTGTCCTTTTT---------------------------GTGAAAAAATTTAAGTTCTACTCTCCTAGCAAATTTCA ATTATACAACACAGTGTTCTCAACTATAATCACTGTATTTTACATTAGATCCTCAGACTTTATTTCATCTT--ACAGCTG CAAGTTTG-------------TACCAGCCAGTCTTAAC---TCCCTGGTGCCAGAATGGG-GCACAGT----AGGTCCTG GTGGGACCTCAC >Sus_scrofa AATAACTGAATGAGTACAGATATTGGTTTGAAATGTCCTCTAAGGAGTAGTGA----TCCCAGATAGTCTTTTT-----A AAATTTTCATTTCAATTTTATGGAGATTATAATTTACATTTAAAATTATAAGATATTTAAAGCATACACTGTGGTATTTT GATACACAT---------GTAGAT---TGTGAAAGAATTACTCCTCCCCATCTAGTTAATTAAGTCACCCATCAGCTCAC ATGCATATTTT---------------------------GAGGGGGAGAACATTTACGTTCTGCTCTCTTAGCTAATTTCA ATTATACAATACAGGGTTATCAACTAAAGTCATTATGTTTTCCATTGGATGCTCAAACCTCA-TTCATCTT--ATAGCTG ------------------------------GTCTTAA----AG--TGGTCCTAGCATCTG-CCACAGT----AGGTGCCG GTAGGACTTCCC >Bos_taurus AATAACTGAATGAGTACAGATATTAGTTTGAAATGTCCTCTAAG---TTGTGAG---TACCAGCTAGCTTTTTT-----A TAAAAGTTATTTCAGTTTTATAAGAGACATAACTGACATATAAAATTATAACATATTTACACCATACACTCTGGTGTTTT CATGCACATA--------ATAAAT---TGTGAAAGAATCCCCACCCCTCATCTAGTTAATTAAGCCATCCATCAGCTCAC ATACATATTTT---------------------------TGGGGCGAGAACACTTAAGTTCTACTCTCCTAGCAAATTTCA ATTATACAATACAGTGCTATCAACTATAATCACCATGTTTTCCATTAGACGCTCAAACGTTA-----TCTT--ATAGATG GAAGTCTA-------------TACCGGCTGGTCTTAAC---TC--TGGTATTAGCATATGCCCATGAC----AGTTGTCA GTGAGACTTCAC >Equus_caballus AGTAATTGAATGAGTAAAGATAGTGGTTTGAAACGTCCTCTAATAATTAGTGAG---TTCCAGCTAGTCTTCTT----TT GAAAATTTCTTTCAGTCTTATTGAAG-TATAATTGACAT--AAAATTGTAAGATATTTAAAGTGAACCTCATGGTGTTTT GATACACAT---------ATACAT---TGTGAAAGGAT-----CCACCCATCTAGTTAATTACCACATCCTTCACCTCAC ATATTTATCTTTTTTT-----------------TTTTTTTTGGTGACAACGTTTAAGTTTTCCTCTCTTAGTAAACTTCA ATTATAAAATACAGTGTTATCAACTGTAATCACCACGTATAATATTAGCTCCTGAGACCTTA-TTCATCTT--AGAGCTG CAAGTTTG-------------TCCCAGCTAGTCTTAAC---TCCACGGTCACAGCACACG-ACACG----------GCCA GTGGGACCTCAC >Ceratotherium_simum AATAACTGAATGATTACAGATACTGGTTTGAAATGTCCTCTAATAAGTAGTGAG---TCCCAGCTAATCTTCTT----TT TTAAATTTATTTCGGCTTTACTGAGG-TATAATTGACATATAAAATTGTAAGATATTTAAAGTGTACATTGTGGCGTTTT GATACACAT---------ATACAT---TGTGAAAGGATT----CTTCCCATCTAGTTAATTAACAAGTCCTTCACCTCAC ATATTTATCTTTTTTT----------------------TTTGGTGACAACATTTAAGTTCTCCTCTCTTAGCAAATTTCA TGTATACAATACAGTGTTATCAACCATAATCACCATGTATAACATCAGATCCTCAGACCTTA-TTCATCTT--ATAGCTG AAAGTTTG-------------TCCCAGCTAGTCTTAAC---TCCATGGTCACAGGATATG-CCACA----------GCCA GTGGGACCTCAC >Myotis_myotis AGTAACTAAATGAGTACAAATATTGGCTTAAAATGTCCTTTATTAAGTAGTGAG---ATACAGCTAGTCTTTTT------ AAAATTTTATTTCAGCTTTATTGAAG-TATAAATGACATATAAAATTGTGAGATATTTAAAGTGTAGATC---ATATTTT GATACATTT---------ATATGTGAGGGTGAAAGAATT----TCCCTCATCTAGTTAATTAACACATCTATCACTTCAC ATAGCTATCTTTTTTTTTTTGGTTTGGTCATTTTTGTTTTTGATGAGAACATTTAAGTTATTCTCTTTTAGCAAATTTCA ----------------TCATCTGCTATAATCACCATGGTTTATGTTAGGTCTTCAGATCTTA------CTC--ATAGATG AAAGTTTG-------------TACCAGCCAGTCTTTAC---TTCATGGTCTCAGCATTTG-CCACAGC----AGGCACCA GTGGGACATCAG >Rousettus_aegyptiacus AATAACTAAATGAGTATAGATATTGCTTCGAAATGCCCTCTAATGA-TAGTAAG---TTCCAGCTATTTTTTTT------ ----TTTAATTTCAGCTTTATCGAGG-TGTAACTGACATACAAAATTGTAGGCGATTTAAAGTATACATTGTGGTGTTCT GATAAAC-----------ATATAT---GGTGAAAGGAT-----CACCCCATCTAGTTAATTAACACATCGATCACTTCAC ATATTTATCATTTTTT--------------TGTGTGTTTTTGGTGAGAACATTTATGTCCTGCTCTC--AGCAAATTTGC ATTATGCAATACGGTGTTATCA-CTATAATCACCATGTTTTGCATTACATCCTCAGATCATA-TTCATCTT--ACAGCTG AAAGTCTG-------------TATCGGCTAGTCTTAAC---TCAGTGGTCCCACCATATG-CCACAGC----GGGCACCA GCGGGACTTCAC >Condylura_cristata AATAAGTG-GTAATCACAGTGGATGATCTGAAATGCCCTTTCAG---TGGTGAG-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------TTCCCACTGGATTTATC---TCCC---------------------------AGGTGCCA GCAGGACCTCAC >Erinaceus_europaeus AATGTCTGGGCAAATCCAGTTATTAGAATG-AATGTTTTATAAG---TAGTGA--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------TTCCAAGTAGTCTCAAC---TCCATGGTGTCCA-------CTATAGC----AGGCATCA GGGAGAATTTAT >Homo_sapiens AATAACTGAATGAATACAGATATTGGTTTGAAATGTCCTCTGACATTTGGTGAG-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------TCCCAGCTAGTTTTAAC---TCCCTGGTCCCAGTATATG-CCACAGTTAAGAGACACCA GTGGGACCTCAC Dog385_LINE >L1_CARN7_3END -------------------------------------------------------------------------------- ---------------------TTGTATGGTGACAGA---TGGTAACTAGACT-TATTGTGGTGATCACTTCACA----AT GTATACAAATGTCGAATCA---------CTATGTTGTACACCTGAAACTAAT---ATAACATTGTATGTCAATTATA-CT CAAATAAAAAAA-------------------------------------------------------------------- ------------------ >Canis_familiaris CAAACC---CGTAGGTTACTCTGT--AAGCTCATTGGATATA-----CCTTCACTGG-TTAA---AATGG-----CTTT- -------TC--TGTGGTG-------------ATGGA---TGTTAAGTAGCCT-TATTGTGTTAACCATTTCACA----AT GTACGCAAATATTGAATCA---------TTACGTTGTATACCCAAAACTA-------------CTATGTCAATTAAGTCT CAATTTTAAAAAGTTT-----AATTGCTTCAATTAATAATG------ACAATTGAATAGATGCAAAGGGAAAATATAAAG GGCTAAGCTCTTGAAAGT >Felis_catus CAAATA---CATAGGTTACTGTAT--GAACGCACTGGATATA-----TATTCATTGA-TTAA---AATGG-----CTTTT TTATAACTG--TGTGGTG-------------ATAGA---CGCTCAGTAGACT-TATTTTGATAACCATTTCACA----AT GTATACAAATACTGAATCA---------TTATGTTGTATAGCCCAAACTA-------------ATATGTCAATTTAATCT CAATTTAAAAAATTTT-----AATTGCTTCCATTAATGATG------AAAATTGAGTAGAAGCAAAGGTACAGTACAAAG TGCTAAGTTCTTGAAAGT >Manis_pentadactyla CAAATGACACATAGGTTATTATATTCAATCTCACTGGATATA-----TTTTCATTGG-TTAA---AATTG-----CTTTT TGG----TG--TGTGGTG-------------ATGGA---TGTTAACTAGACT-TACTGTGGTAATCATTTTACA----AC ATATACAAATATTGAATCA---------TTATGTTGTACACCTGGAACTGAT------ATGTTATATGTCAGTTATATCT CAA------AAAATGTTT---AATTACTTCAATTAATGGTG---GAGAAAATTGAGTAGAAGCAAAGGT---ATATGAAG TATT-ATGTCTTGAGTGT >Sus_scrofa CAAACA---TAGAAGACATTAAACCCAAGCCTATTGGATATA-----CTTTCATCAA-TTAA---AACTG----CTTTTT TTGTAACTATGTGTGGTG-------------ATAGAAGGTATTAACTAGACT-TATTGTGTT---CATTCCCTAATACAT ATATACAGATATCAAATCATAACGCTGGCTATGTTGTACACCTGAAACTAAAAGTATAA--TTGCATGTCAATTATACAT TAATT----AAAATTTTT---AATTGCTTCAGTTAATGGTG---AAGGAACTTGAGTGGAAGCAAAGGTGTAATATAAAG TGTTAACTTCTTGAAAAA >Tursiops_truncatus CAAACAACACATAGGTTATTA-ACCCAAGCCCATTGGATATAAATA-TTTTCATCAA-TTAA---AATTG-----CTTTT TTGTAACTC--TGTGGTG-------------ATGGA---TGTTAACTAGACT-TCTTGTGGTAATCATTTCATAATACAT ATATACAGATATCGAATCA------TTGTTATATTGTACACCTAAAACTAATAGCATAATGTTCTATGTCAATTATATCT CAATT----AAATTTTTT---AATTGTTTCAGTTAATGGTG---AAGAAAATTGAGTAGAAGCAAAGGTGTAGTATAAAG TGTTGACTTCTTGAAAGT >Equus_caballus CAAACAACACATAGGATATTATATCCAAGCCCAATGGGCAGAAATA-TTTTCATTGA-TTAA---AATTG-----CTTTT TTGTAACTG--TGTGGTG-------------ATGGA---TGTTAACTAGACT-TTTTTTGGTGATCATTTCACA----AT ATACACAAATGTTGAACCA---------TTATATTGTACACCTGAAACAAAT---ATAATGTAATAGGTCAATTATACCT CAATTTAAAAAATTTATT---AATTGCTTCAATTAG-GGTG---AAGAAAACCGAATAGAGGCAAAGGTATAATATAAAG TGTTAAGTTGTTGAGATT >Ceratotherium_simum CAAACAACACATAAGTTATTATATCCGAGTCCATTGGGTATAAATA-TTTTCCTTGA-TTAA---AAATG-----TTTTT TTATAACTT--TGTGGTG-------------ATGGA---TGTTAACCAGACT-TATTGTGGTAATGATTTCACA----AT ATATACAAATATTGAATCA---------TTAT-TTGTACACCTGAAACTA-----TTAATGTAATATGTCAACTTTATCT CAATTAAAAAATTTTTTT---AATTGCTTCAATTAATGGTG---AAGAAAATTGAATAGAAACAAAGGTATAGTATAAAG TGTTAACTTCTTGAAAGT >Myotis_myotis CAAACA--ACAAAGGTTATTTCAT-CAAGCCTATTGGATGTAAATA-TTTTAATGAA-TTAA---AATCGAATTTTTTTT TGGTAACTA--CATAGTG-------------ATGGA---TGTTAACTAGACT-TATTGTGGTGATCATTTTGCA----GT ATATACCAATATAGAAGAA------TTATTATGTTATACACCTAAGGCTA----------ATATAAAGCCAATTATATCT GATTTTTAAAAAAATTTT---AATTGCTTCAACTAAGGGTG---AA-AAAATTGAGCTAAAGCAGAGGTATAATAT---- ------CTTCTTCAAAGT >Rousettus_aegyptiacus CAAACAACACATAGGTTATTTTATCCAAGTTCATTGGATATAAATA-TTTTAATTGATTTAA---AATTG-----TTTTT TCATAACTATATATGGTG-------------ATGGA---TGTTAACTAAACTATATTGTGATGATCATTTTGCA----GT ATAAACAAATATGGAATCA---------TTATGTTGTATACTTGAAGCTA--------ATATAATATGTCAATTATATCT CAAGT---AAAAACCTTT---AATTGCTTTGATTAATGGTG---AAGAAAAATGAGCAGAAGCAAAAGTATAATATAAAG TGTTAACTTCCTGAAAAT >Condylura_cristata CAAGCAACACATAAGTGATTATGTCCAAGTTCACTAGATATAGATATTTTTCATTGA-CT-----AATGA---------- ----AAATT--AATGATG-------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------AAGAAAACTGAGTAGAAGCAAAGGTAGA-----AAG CATTCATGTCTTGAAAGT >Solenodon_paradoxus CAAGCAACATGCAGGTTATTAGGTCCAAGACCATTAACTGTAAATA-TTTTAATAG--TTA----AAATT---------- CCTTAAATTAAAAAGGTG-------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------AAGAAAATTGAGCAAAAACAAAGGTATAATACAAAG TTCTAACTTCTTGAAAGT >Homo_sapiens CAAACAACACATAGGTTATTATGTCCAAGTCCATTGGATATAAACATTTTTTATTA--ATAA---AATTG---------- -CTCCAATC--AATGGTG-------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------AAGAAAACTGAATTGAAGAGAATATGTAATATAAAG TGCTAGCTTCTTGAAAGT Dog386_LINE >L1_CARN7_3END -------------------------------------------------------------------------------- -----TTTTTTTATTTGAG-TATAATTGACATACAATGTTATATTAGTTTCAGGTGTACAAC--ATAGT---GATTCGAC ATTTGTATACATTGTGAAGTGATCACCACAATAAGTCTAGTTACCATCTGTCACCATACAANGTTATACAATATTATTGA C------------------------------------------------------------------------------- ------------ >Canis_familiaris ACTACTTAGTTGAGTAGTCAGGGATCAATGAGC------ATGCCATCTTCTTTGTTACC--------------------- -----------------TGATATACTTGACATAAAACATTATGTTAGTTTCCGGTATATAACATATAAT---GATTTGGT ATTTGTATATATTACAAAATGATCACCACAATAAGTCCAGCCAACAACAT------------------------------ -----CTAAAACATTTTTTAAG-TATT---CA-CATTGCTTCCAGAAAGATGTTGCAACTCGTTAGCAGAATGTA---TT CTT---ATCAGA >Felis_catus ACTAC--ACCTGGGAAGTCATAGATAATAACTTCAACCAATGTCATCCTCTTTCTTACC--------------------- -----------------TGATGTAATTGGAATATAGCATTATGTTAGTTTCAGGAATATAAC--ATAAT---AATTTGGT ATTTGTATATATTGCAAAGTGACCACCACATTAAGTCTGGTTAATGATCA------------------------------ -----TTTTTAAATTTTTTGAG-TATT---CA-CGCTGCCTCCAGAAAACTGTTGCAGTTCTTTAGCAGAATGTGCTCTT CTT---ATCAGA >Manis_pentadactyla ACTACTTGGTTGGGAAGTCACAGATCA------------GTGCCATCCCCTGTCTTATC-------CATTTTTTTTTCAA TT--------------GAGATATAATTAACATGTAACATTATGTTCATTTTAGGTGTACAAT--ATAAT---GATTTGAT ATTTATATATATTGTGAAATGTTCCC------AAATCTAGCTGACAACAA------------------------------ ----TTTAAAATATTTTTTAAG-GATT---CT-CACTGCCTCCAGAGAAATGTTGCAATTCTTCAGCAGCATATACTCTT TTT---ACCTGA >Sus_scrofa ACTACCTAGTTGATAAGTCATGGATCAACGAAC------ATGCCATGCTCTTTCTTACC--------AACTTTTAAAAAA TT--------------GAGATATAATTGACCTCTAGCGT--TGGTAGCTTCAGATGAATGCA--ATAAT---GATTCCAT ATTTGTATATATTGTGAAATGATCAC---AACAAGTCAAGATAACCACAA------------------------------ -----CTTTTTAAACTTTCACGGGATT---CA-CACTGCCTCCAGAAAAATGTTTCAACTCTTAAGCAGAATGT--TCTT TTT---ATCAGA >Tursiops_truncatus ACTACTCAGTTGATAAGTCATGGATTAATGAGC------ATGCCGTACCCTTTCTCACC--------AACTCTTTTAAAA TT--------------GCGATATAATTGACATATAACAT--TGTTAGTTTCAGATTCAC------TAAT---GATTCCAC ATTTGTATATATTGTGACATGATCAGTACAATAAATCAAGCTAACAACAA------------------------------ ----TTTAAAAAATGTTTTAAG-GATT---CT-TACTGCCTCTAGAAAAATGTTGCAACTC--TAGCAGAATATACTCTT CTT---ATCAGA >Equus_caballus ACTACTCTGTTGGAAAGTCATGGATCAATGAGC------ATGCCATCCCCTTCATTACC--------ATTGCTTTT---A TT--------------GAGATGTAATTGGCATATAACATTATGTTAGTTTCAGTTGTACAAC--ATAAT---CATTCGAT ATCTGTATAT------------------------GTCTAGCTGACAAGAA------------------------------ ------GTTTTTGATTTTTAAG-GCTT---CA-CATTGTCTCCAGAAAAATGTTGCAACTCTTTAGCAGCATGTACTCTT CTTCTTTCTAGA >Ceratotherium_simum ACTATCCAGTTGGGAAGTC-TGGATCAATGACC------ATGCCATCCCCTTCATTACT--------ATTGTTTTTT--G TT--------------GAGATATAATTGGCATATAACATTATGTTAGTTTCAGGTATACAAC--ATAAT---GATTCGAT GTTGGTATATATTGCAAAATGATCACCATAATAAGTATAGCTGACAACAA------------------------------ ------TTTTTTAATTTTTAAG-GATT---TA-CACTGCCTCCAGACAATTGTTGCAACTCTTTAGCAGAATGTACTCTT CTT---ACCAGA >Myotis_myotis ACTACTCAGTTGGAAAGTCCCAGGTCAATGATC------ATGCCTTCTCCTTTCTCATC-----------ATTTCTT--- TT--------------GAGATAT-ATCGACATATTACATTA-----ATCTCAGGCATGCTGCCTATAGTAGTGACTTGAT ATTTGTATGTATTGGGAAATGATTACCACATGAAGTCTAGCTCACAACAT------------------------------ -------------------AAC-GATT---CA-CACTGCTTCCAGAAAAATGTTATAACT--TCAGCAGAATGCACTCTC CTGCTTGTCAGA >Rousettus_aegyptiacus ACTACCCATTGGGAAAATCATGGATCAATGAGC------ACACCATCTCCTTTCTTAGA--------AATATTTTTT--- TT--------------GCAATATAATTGACA-----CATTATGTTAGTTTCAGGTGCACAAC--ATGAG---GATTTGAT ATTCGTATATATTGCAAAATGATCACCACAGTAATCCTGGCTAACAACAT------------------------------ -------------------AAA-GATT---CA-CACT-----------------------CTTTAGCAAAATGTACTCTT CTT---ACCAGA >Condylura_cristata ACTACTCACTTGGAAATTCATGGACCAGTGCAC------ATGCCATTCCATTTCTTTCT---GATATATCTTTTAATGAA TT------------------------------------------------------------------------------ -------------------------------------------------------------------------------- ------------------------------CATCCCTGAATCCAGAAAAGTGTTGCAACTGTCTCTGAGAATGCAGTCTT CTGTT-GTCAGA >Erinaceus_europaeus ACTACTCCGCTGGAAATTCATGGATCACTCAGT------ATGTTGGTCTCTTCCCATTT-------TAATTTTTTTTAAA CT------------------------------------------------------------------------------ -------------------------------------------------------------------------------- ------------------------------TA-TATGGAATCCCCA-AACTGCTACAACTC---AGCAGGATATATTCTG CTCTT-AATAGA >Homo_sapiens ACTATTCAGCTGGGAATTTACTGGTTAATGAAC------ATATCATTCCCTTTGTCATA--------ATTTTTTAATGGA TT------------------------------------------------------------------------------ -------------------------------------------------------------------------------- ------------------------------CA-TACTAGCTCCAGAAAAATGTTGCAAATGTTTAGCAGAATATATTCTG CTTCTTATCAAA Dog387_LINE >L1MA9_3END -------------------------------------------------------------------------TGGAGAT CTAATGTACAGCA------------TG-GTGACTATAGTTAA---------TAATACTGTATTGTATACTTGAAATTT-- --GCTAAGAGAGTAGATCTTAAGTGTTCTCACCACACACAAAAAAATGG------TAACTATGTGAGGTGA-TGGATATG TTAATT---AGCT-TGATTGT-GGTAATCATTTCACAATG-------------TATACGTATATCAAAACATCACGTTGT ACACCTTAAATATATACAATTTTTATTTGTCAATTATACC-TCAATAAAGCTGGAAAAA--------------------- ------------------------------------------------------ >Canis_familiaris AT----TTTAATCTTCAGAACAACACTGTGAATTAATTTAAAATATTAATTTTAT---AATAAGAAAATT---------- -ATATGTAAAGCA------------TGGGGGACAATAGTTAA---------TAGTACTGTATTGTGTATTTGGAAGTT-- --GCTAAGAATGTAGATCTT----GTTCTCATGACAAGAAAAAGGAATTCGTAACTAACTATGTGAGGTGC-TAG--ATG TTGATG---AGAC-TTACTGT-GGTAAACATTGCACAACA-------------TATATAAATATTGAATC---ATGTTGT ACACCTGAAACCAATATAA-TGTTAAATGTCAATTATATT-TCAATTTTTTAAAAAG---------GGTGGGAAAATT-- -TCTGTTTAAGGCTACCCAGC---CAAGAGGCAAAACTC-AGCACTCCTGACTG >Felis_catus ATCTTATTTAATCTTCAGAACA---CAGTGGATTAATTTATAATATTAATTTTAT---AATGAGAAAATT---------- -ATGTGTACAGCA------------TG-TGGGGGATAGTTAA---------TAATGCTGTATTGCATATTTGGAAGTT-- --GCCGAGAAAGTAGATCTTAAAAGTTCTCATTGCAAGAAAAAGGAATTTG----TTACTATGTGAGGTGA-TGG--ATG TTAACTATAAGAC-TTATTAT-GGTGATTATTTCACAATA-------------TATGCAAATAGTGAATCATTATGTTGT CCACCTGAAACCAATGTGA-TGTTAAATGTCAATTGTATC-CCANNNNNNNNNNNNN---------NNNNNNNNNNNN-- -NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Manis_pentadactyla ATTTTATTTAATCTGCAGAACAACTGTGTACGTTAATTTATATTATTAGTTTTAC---AATAAGAAACTT---------- -ACATGGACAGCA------------TG-ATGACTATAGTTAA---------TAATACTATATTGCATATTTGGGAGTTAA TAGCTAAGAGAGTAAA---TAAAAGTTCTCATCACAAGAAAAAAAATTTTA----TAACTATGGGTGGTGATTAG--ATA TTAACT---ACAC-CTATTGT-CATGATCATTTCACCATA-------------TAAACAAATACTGAATCAGGATGTTAT ACACCTGAAACTAACATAA----TATATGGCAATTATATC-TCAATTAAAAAAGAAAAGAAAA---AAGAAGAAAATG-- -GAG-TTTAAAGTTGCACAGCTAACAAAAGGCAAGACTC-AGAACTCCTGACTG >Sus_scrofa ATCTTATTTAATCTTCAGAACAACAC--TGAGTTAATTTTTATTATTAGTTTTAT---AATGAGGAAATT---------- -ACACATACAGCA------------TG-GTGACTATAGTTAA---------TAATACTGTATTGCATATTTGGAAGTT-- --GCTA--AGAGTAGATCTTAAGAGTT---ATCACAAGAAAAAAATTTTGT----TAACTGTGTATGGCGA-TGG--ATG TTAACT---AGAT-TTATTGTCTGTGATCATTTCACTGTA-------------TATACAAATATTGAATCATTATGTTGT ACAACTGAAACTAGTATAA-TGTTATATGTCAATTG-----TCAATTTAAAGCAAAGAAAA-----GAAATGAAAATT-- -GAA-TTTAAGCTTGTGCAGCTAACAAAAGGCAGGACTC-AGAACTCCTGATTG >Bos_taurus AT--TATTTAATCTTCAGAATAGCACTATGAG-TAATTTATATTGTTGATTTTAT---AATTAGAAAATT---------- -ATATGTGCAGCA------------TG-TTGACTATAGT--------------------TATTGCATATTTGGAAGTT-- --GTTAAAAGAGTATATCTTACAAGTTCTCAGCACAAGAAAAAAATTTTG-----TAACTGTGT--GGTGG-TAG--ATG TTAACT---AGAT-TTATTGTCTGTGAACATTTCACAATA-------------TATGCAAATATTGAATCCCTGTGTTGT ACATCTGAAACTAATGTAA-TCTTGTACATCAATTACA---TCAATTTTT----------------TTTAAGAAAATT-- -GAGTTTTCAGGTT--ACAGCCAACGAGAGGCAAGACTT-ACAATTCCTAACTG >Equus_caballus ATCTTCTTTAATCTTCAGAACAC-----TGAATTAATTTATATTGTTAGTTTTAT---AATGAGAAAATT---------- -ACATGTACAGGA------------TG-GTGACTA----------------TAACGCTATATTGCATATTTGGAAGTT-- --GCTAAGAGAGTAGATCTTAAAAGTTCTCATCACAAGAAAAAAAATTTTC----TAACTATGTATGATGA-CAG--ATG TTAACT---AGAC-T-------TGTGAGCATTTCTCACTATATACAAATATCGTATACAAATATCAAATCATTATGTTCT ATACCTGAAACTAATATAA-TGTTAAATGTCAGTTATATC-TCAATTTAAAAAA------------AAGAGGAAAATT-- -GAG-TTTAAGGTTACACAGCTAACAAGAGGCAAGACTC-AGAACTCCTGATGG >Ceratotherium_simum ATCTTATTTAATCTTCAAAACAATAC--TGAGTTAATTTATATTATTAATTTTAT---AATGAGAAAATT---------- -GCTTATACAGGT------------CA-GTGACTATAGTTAA---------TAATACTATATTGCGTATTTGGAAGTT-- --GCTA--AGAGTAGATCTTAAAAGTTCTCATCACAAGAAAAAAAATTTTG----TAACTATGTTTGATGA-GGG--ATA TTAACT---AGAC-T-------TGTGATCATTTCACACTATATATAAATATCATATACAAATATCAAATCATTATAGT-- ----TTGAAACCAATGTAA-TGTTATATGTCAATTATATC-TCAATTAAAAAA-------------AAAACGAAAATT-- -GAG-TTTAAGGTTGCACAGCTAACAAGAGGCAAGACTC-AGAACTACTGACTG >Myotis_myotis ATCTTATTTAATCTTTAGAGCAACTCTGTGAGTTCACCTATATTATTAGTTGTAT---AATGAGAATATT---------- -ACATGTACTATAGTTAATACTATATT-GTGACTATAGTTAATACTATAGTTAATATTATATTGAATTTTTGGAAGCT-- --GCTAA-AGAATAGATCTTAAAAGTTCTCATCACAAGAAAAAAAATTG------TAACTGTG----GTGA-CAG--ATG TTAACT---AGATATTGTCATTAATGATCATTTCACAATGT------------TGAATAAGTTTCCAATTATTATGTTGT ATACTTGAAACTAATATAA-TATTATATGTCAATTGTATT-TGAATAAAAAT--------------ATTAAAAAAATT-- -GAA-TTTAAGGTTGCACAGCAAATAGGAAGCAAAACTCAAGAATTCCTGACTT >Rousettus_aegyptiacus ATCTTATTTAATCTTTAGAACAACTC--TGACTTAATTTATAT--TTAGT--TAG---AATGAGAAAATT---------- -ACATGTACAGCA------------TG-GTGGCTATAGT------------TAATACTGTATTGCAAGTTTAGAAGTT-- --GCTAAGAGAGTAGATCTTAAAAGTTCTCATCATAAGAAAAAAATTTTCG----TAACTATGTATGCCAA-TGG--ATG TTAACT---AGGC-TTGTTGT-GGTCATCATTTTACAAAGT------------CGCATAAGTATCTAATGATTATGTTGT ACACTTGAAACTAATATAA-TGTTATATGTCAATTAAATCAGTAATAAAAAGAAAAAGA-------GAAAAGGAAATT-- -GAC-TTTATGGTTGCACCGCTAACAAGAGGCAAAACTC-AGAACTCCTGATTG >Condylura_cristata ATCCTAT--------------------------------------TTAATTTCAG------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------ATTA------TT-- -GAG-TTTAAG------CAGCTAATAAGAGGCAAGAATT-AGAATTCCTGACTG >Sorex_araneus ATCATATTTGATTATCAGAGCAGTACTGC----TAATTTATAT--TTAGTTTTTT------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------CATGAGAAAATA-- -AAA-TTAAAGATTGCACAGCTAAGAAGAAGCAAGGT---GAAATTCTTATCTG >Homo_sapiens AT--TATTTAATCTTCAGATTGACACTGTGCCTTAATTTATGTTATTAGA--TTT------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------ATGAGAAAATG-- -GAG-TTTAAGACTGTATAGCTAGCAAAAGGCAAGACTC--AAACTCCTGACTG Dog389_LINE >L1_CARN5_3END ----------------------------------------------------------------------------GGTG AGCACAGCATAAC----GTAT--------AGAGATGTTGAATCACTATGTTGTACACCTGAAACTAATGTAACATTGTGT GTCAACTATA-CTCAAATAAAAAA-------------------------------------------------------- ------------------------- >Canis_familiaris ATGTTGATCCATGTTGACATAGCTTTTG--CTCAGTTCCTTGCATCTAGGAT---AAATATATGCTACAT---------- ------TCACAATATGCATGT--------AGAAATATTTAATCATGATGTTGTACACCTGATACTAATGTAAGGATATAT GCCAATTGTATCTCAATTTAAAAAT---AAATCTCT-ACTGAATCAT---AATTAAACAGAGGAAGTATCTGGGCCTAAG AGAATCTA-AAATGGCTGTGCCTCC >Felis_catus ATGTCGACCCAAGTTGAGATA-CCTTAGCTCTCAGTTCCTTGCACCCAGGAT---AAATCTATACTGTGTCAC------- ------TCACAATATGCATAT--------ACAAATATTTAGTCATTATTTTGTACACCTGAAACTAATGTAATGTTATAT GCCAATTATACCTCAATT---AAAA---AAGTCTCT-ACTGAATCAT---ATTTAAACA---GAAGTGTCTGGGCCTAAC AGAATCTA-----GTCTGTGCCTCT >Manis_javanica GTGTGGATCCATGTTGAGGTAACGTTAG--CTCAGTTCTTTGCTCCCAGGAT---AAATCTATACTGTATCAT------- ------TCACAGT----ATAT--------ACAAATATTGAATCATTATGTTGTACACCAGAAACAAATACGATGTCACA- GTCAATTATATCTCAATTTTAAA-----AGATCTCT-ACTGTATTGT---AATTAAACAGAGGAAGTTTCTGAGTTTAAC AGAATCTA-AAATGCC--TGCCTCC >Sus_scrofa ATGTTGATCCAT-TTAAGGTAGCTTTAG--CTCACTTATTTTGTCTCAGGAT---AAATCAATACTGCATCAT------- ------TCACAAT----ATAT--------ACAAATATTAAATC---ATGTTGTACACTTGAAACTAATATAATGTTAT-T GTCAATTATATCTCAATA--AAAAA---AAATCTAT-ACTGCATCAT---AATTAAACAGAGGAAGTGTTTGAGCCTAAC AGGATCTC-AAATGTC--TGTCTCC >Bos_taurus ATGCTGATCCATGTTGAGGAGGTGTCAG--ATCAGTTCTTTGTTCCCAGGAT---AAATCCATACTGCATCAC------- ------TCACAAT----ATAT--------ACAAATATCAAGTCATTATGTCATACACCTGA----AATGTAATATTATAT GTCACTTATATTCGAATTTT---AA---AAATCTCT-AACGCATTGT---AGTTAAACAGAGGAAGTGTCTAAACCAAAC AGAATCTA-AGATGTC--TGTCTCC >Equus_caballus ATGCTGATCCATTTTGAGGTAGGTTTAG--ATCAGCTC--TGCTCCCAAGAT---AAACGTATACGGCATCAT------- ------TTGCAAT----ATAT--------ACAAATATCGAATCATTATGTTGTACATCTGAAATTAATATTATGTTATAT ATCAACTGTATCTCAATA--AAAAA---AAATCTCT-GCTGCACTGT---AATTAAACAGAGGAAGTCTCTGGGCCTAAC AGAATCTA-AAATGT---TTCCTCT >Ceratotherium_simum ATGTTGATCCGTGTTGAGGGAGCTTTAG--CTCAGCTCTTTGCTCCCAGGAT---AAATGTATGCTGCATCAT------- ------TCGCAAT----ATAT--------ACAAATAATGAATCATTATATTGTTAACCTAAAACTAATATTATGTTAGAT ATCAATTATATCTCAAT----AAAA---AAATCTCT-ACTGCATTAT---AATTAAACAGAGGAAGTGTCTGGGCCTAAT AGAACCTA-AAATGT---TGCTTCC >Condylura_cristata ATGTTTATCCATATGCAGATAGCTTTAG--CTGAGTTCTTTGCTCCCAAAAT---AAATCTATACTACATGAT------- ------TTGCAAT----ATATACAAGTAAACAAATATTGAGACATTATGT-GTACACCTGAAATTAATATATTGTTTTAT GTCAATTACATCTCTCTTTTAAAAA---AAATCTCT------ATGAT---AATTAAACATAGGAAGTGTTTGGGCCTAGA AGAATCTA-AGATGTC--TGTCTCC >Solenodon_paradoxus ATACTGAAGCATGTGGAAGAAGCTTTAG--CTCCATTTTTTACTCACAGGAT---AAATATATACAATATCAT------- ------TCACAAA----ATAT--------ACAAATATCCAAACATTATGTCATA-ACCTGAAAATAAC---ATGTTACAT GTCGATTATATTTTATTTT---TTT---TAATCTCTTACT--CTCAC---AATTAAACAGAGGAAGTGTCTAGACCCAGC AGAATTCA-AAATGTC--TGCTTTC >Myotis_myotis ATATTGATTGGTGCTGAGGTAGCTTTAG--TTCAGTTCTTTGCTCCCAGGAT---------------------------- -------------------------------------------------------------------------------- ----------------------------GAGTCAAT-ACTGCATCAT---AA----GCAGAGGAAGTATCTGGGCCTAAC AGAATCTAGAAATGTC--TGCCTCC >Rousettus_aegyptiacus CTGTTAATCCACATTGGCAAAGCGTTAG--CTCATTTCTTTGCTCCCAGGAT---------------------------- -------------------------------------------------------------------------------- ----------------------------AAACCTCT-ATTGCATCAT---AA----ACAGAGGAAGTGTCTGAGCCTAAT AGAATCTA-ACGTGTC--TGCCTCC >Homo_sapiens ATGTTGGTGCATGTTGAGATAGCTTTAG--CTCAATTCTTTGCCCCCAGGAT---------------------------- -------------------------------------------------------------------------------- ----------------------------AAATCTAC-ACTACATCAT---AATTAAACAGAGGAAGTGTCTGGGCCTAAC ACAATCTA-AAACATC--TCCCTCC Dog390_LINE >L1MA9_3END -------------------------------------------------------------------------------- -TTCAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGTACAGCATGGTG-ACTATAGTTAATAATACTG-------- --------------TATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCACCACACACAAAAAAA--T GGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACG------------T ATATCAAAACA--TCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA -------------------------------------------------------------------------------- ------------------------------------- >Canis_familiaris GAGGGGTAGCTTCCCAGAGGAAGTGAGTTCTATT-ACCTCTACTGAGATCT---GAAGAACAAGAAAGATTAGCCATA-- -----------TAAAGTAAATAGGTTATGGGGATATGATGCATAGCATAGTG-ACTATAGTTAATAATACTG-------- --------------TGTTGTATATTTAAAAGTTCCTAAGAGAGTAGATTTTAAAAG--CTCATCACAAGACAAAAAACTT TGTA--TATGTGTGGTGATGG--ATATTTGCTTGACTTAATG---TGATCATTTCACAATCTATACA------------- ----CAAATCA--TTATGGTGTATACTGGAAACTACTATAA-TGTTGTATGTCAATTCTATCTCAATTGA---------- ---AAAGAAAAAGAAAGATTAGCCA---GGTGAAAAAGCATGTGTATATATGTGTGTATTATGTGTATATGTGTGTGTAT GGGTGTGCATGCACATAGGATACAGTGTTTCAAGTAG >Felis_catus GAGGGGTAGCTTTGCAGAGGAAGTGAGTTATATT-ATCTCTACGGAGATCT---GAAGAATGAGAAAGATTAGCCATA-- -----------TAAAATAAAT--GTCATGGGGATGTAATGTACAGCCTGGTG-ACTATAGTTAATAATACTGTATTATTT ATTTATTTTCACTATATTGTACATTTAAAAGTTGCTACGAGAGTAGATTTTAAAAGTTCTCATTACAAGACAAAAAA--- -----CTTTGTGTGGTGATTC--ATGTTTGCTAGACTTAAGGTGGTGATCATTTTGCAATCTATACA------------C ATATCAAATCATTTTATGTTGTTCACCTGAAACCAATATAA-TGTTATATGTCAGTTATATCTCAATT-T---------- ---AAAAAAAAAGAAAGATTAGCCA---GGTAGAAGT--------------GTGTGTG-TGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTATGTGTAGGATAAAGTGTTTCAAGTAG >Manis_pentadactyla GAGGGATAGCTTCCCAGAGGAAGTGAGTTATATT-ACCTCTACTGAGATCT---GAAGAATAAGAAAGATTAGCCATA-- -----------TAAAATAAATAAGTCATCGGTATGTAATGTATAGCATAGTG-ACTACAGTTATTAATACTG-------- --------------TATTGTATATAGAAAAG------AGAGAGTGGATCTTAAAAACTGTCA-CACAAGAAAAAATATTT TCTAACCATGTATGGTGATAG--ATGTTTACTAGCTTTATTGTAGTG---ATTTCACAATATATACA------------T ATGTCAAATCA--TTA----GTACACCTGAAATGAATATAA-TGTTACATATAAATTATATCTCAGTA------------ ---AAGAAAA--AAGAGATTAATCA---GGTGTAAAA---------------------------------GTGTGTGTAC ATGTGTGCATGTGTGTAGGATAAAGTGCCTCATCTAG >Sus_scrofa GAGGG-TAGCTTCCCAGAAAGAATGAGTTACAATTATTTCTACTGAGATCT---GCAG---------GATCAGCCACA-- ------------AGAATAA----GTCCTGGGGATGTAACCTATAGCATGGTG-ACTATGGTTAATAATACTG-------- --------------TATTGTATACATAAAAGTTGCTAATGGAATAGATCTTAAATGTTCTCATCAGATTAAAAAAAA--T TTTAACTGTGTGGGGTGATGA--ATGTTAACTAGATTCAC-----TGATCATTTCACAATACATACA------------C ACACTGAATCA--TTATGTTATATACTGGAAACTAATACAA-TGTTTTATGTTAATCGTATCTT--TT------------ ---AAAAAAA--GAAAAATTAGCCA---GGTGGAATA-------------------------------------GTGTGT ATGTGTGCATGTCTGCAGGATAAAATGTTTCAGGCAG >Bos_taurus AAGGG-TAATTTCCCAGAA-----GTGTTACAGT-ATTTCTACTGAGATAT---GAAGAACACAGAAGATTAACTTTA-- -----------TAAAATAA----CTCATGGGGATGTAATGTACAGTATTGCGAACTACAGTTTATAATACTG-------- --------------TATTGTATATTTAAAAGTTGCTAAGGGAATAGGTCTTAAAAGTTCTCATGAGATTTAAAAAAG--- TGTAACTGTGTGTGGTGACAA--ATGTTAACAAGATTT------------ATTTCACAATATATGCA------------T ATATTGAATCA--TTATGTTGTCTACTGTAAACTAATATAA-TATTTTATGTCAATTATATCTTAA-------------- ---AAAA-----GAAAAATTATCTG---GGTGGAAAA---------------------------------------GTAT GTGTGTGCATATCTGTTGAATAAAGGGTTTTAGGGAG >Equus_caballus AAGGGATAGCTTCCCAGAGAAAGTGAGTTACATT-ATCTCCAGTGAGATCT---GAAG---AAGAGAGATTAGCCATA-- -----------TAAAATAAGTAAGGCGTGGGGATGAAATGGACAGCAGGGTG-ACTGTAGTTAATAATACTG-------- --------------TATTGTATATTTAAAATTTGTTAAGAGA-----------------------------AAAAAAATT TGTAACTGAGTGTGGTGATGG--ATGTTAACTATACTTATTGTGGTGATCATTTCACAATATATAGA------------T ATTTCATATCA--TTATGTTGTACACCTGAAACTAATATAA------AATGTCAATTATATCTCAACT------------ ---AAAAAAA--GAGAGATTAGCCA---GGTGGAAAG--------------------------------------TGTGT GTGTGCGCATTCATGTAGGATAAAGTGTTTCA-GTAG >Tapirus_indicus GAGGGATAGCTTCCCAGAGAAAGTGAGTTACGTT-ATCTCCACTGAGATCT---GAAGGATAAGAGAGATTAGCCATA-- -----------TAAGATAAGTGAGTCATGGGGATGTAATGTACAACATGGTA-ACTATAATTAACAATACTG-------- --------------AATTGT-TATTTAAAAGTTGCTAAGAG------------------------------AAAAAAATT TGTAACTGTGTGTGGTGATGG--ATGTTAACTATACTTATTGTGGTGATCATTTTGCAATATATGTATATCTATATATCT ATCTCAAATCA--TTATGTTGTACACCTGAAACTAATATAA------TATGTCAATTATATTTCAATT------------ ---TAAAAAA--GAGATATTAGCCA---GGTAGAAAG----------------------------------TGTGTGTGT GTGTGTGCATTCATGTAGGATAAAGTGTTTCA-GTAG >Myotis_myotis GAAGAATAATTTCCCAGAGGAAGTGAGTTACATT-ACCTCTACTGAGATCT---GAAGAGCAAGAAAGATGAACCATA-- -----------TAAAATAAATAAGTCCTGGGGATGCATTATGCAGAGTAGTG-ACTGTAGTTAATAAAACTG-------- --------------TATTGTATATTTAAAAGTTGCTAAGAGAATAGATCTTAAAAGTTCTCATCACAAGAAAAGAA---T TATAAC--TGTGTGGTGATGG--AAGTTAACTAGATTTATTGAGGTGATAATTTCACAGTATATGCA------------T ATATCAAATCA--TTATGTTGTACACCTGAAACTAATATAA-TGTCACAGGTCAATCATATCTCATTT------------ ---AAAAAAG--AAAAGATTAGCCA---GGTGAAAAA--------------AGGCGTG---TGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGAGATAAGGTGTTGAAGGTAG >Rousettus_aegyptiacus GAGGGATAGCTTCCCAGAAGAAGTGAGCTACATT-ACCTCTACTGAGATAT---GAAGAGCAAGAAAGATTCACTGTA-- -----------TCAAATAAGTAAGTCCTGGAAATGTAATGTATATCATGCCG-GCTATAGTTAATAATACTGT------- --------------TATTGTATATTTAAAAGTTGCTAAGCATGTGGATCTTAAAAGTTCTCATCACA--AAAAAAAAATT TGTAAC--CGTGTGGGGATGG--AATTTAACTAGACTTATTGTGGTGATCATGTCCCAATATAGACA------------C ATATTGAGTCA--TTATGTTGTACATCTGAAACTAATATAA-TGTCGTATGTAAATTATATCACAATT------------ ----AAGA----TAAAGGATAGACA---GGTGGAAAA--------------GTGTGTG-TGTGTGTGTGTGTGCGTGCGC GTGTGTGTGTGTGTTTAGGATAAAGTGTTTCGGGTAG >Condylura_cristata GTGGGATAACTTCTCAGAGGAA------CGTCTTGATTTTCAGTGAAATCT----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---GAAGAACAAGAAAGATGAGCCA----GTAGAAAG-------------------------------------GTGTGT ATGTGTATATGATTGTAGGATAAAGTGTTACAGGGAG >Solenodon_paradoxus GAGAGAGAGCTTTCCAGAGAAGGTGATTTACAT-GATCTCCACTGAGATCT----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---GAAGAACAAGAAAGATGAGCCA---GGTAGAAAA-------------------------------------GCGTGT GTGTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Homo_sapiens GAGTGATGGCTTCTCAGA---AATGAGTTACATT-ATCTCCAGCAAGATGT----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---GAAGAACAAGGAAGACTAGCCG---GGTGGAAAA-----------------------------------------GT TTATGTGCATACATATAAGATAAAGTGTTTCAGGGAA Dog391_LINE >L1MA9_3END -------------------------------------------------------------------------------- -----CCAGGGGCTGGG---GGGTGGGGGAAATGGGGAGATGTTGGTCAAAGGGTAC-AAAGTTTCAGTTATGCAGGATG -AATAAGTTCTGGAGATCTAATGTACAGCATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGA GAGTAGATCTTAAGTGTTCTCACCACACACAAAAAAA-----------------------TGGTAACTATGTGAGGTGAT GGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAAT ATAT-ACAATTTTTA-TTTGTCAATTATACCTCAATAAAGCTGG---AAAAA---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------- >Canis_familiaris CACATCAGCCAAATCG----ATTTCT-GGGGTGGGGCCAGAGC---CTTGGCACCTTG---AAGAAGA-TCC-----CCA GG---------GGT-GG---GGGATGGGGAAATTGAATGTAGGTGGAC----------AGACTTTTAGTTA-------TA -AGTAAATATTGGGGATGTAACATGCAACATGATGACTACAGTTAACA---CTATATGGTATATTTGATAATTGCTAAGA GAGTACATTGTAGAAGTTCTCATCACAAGGAAAAAAACATTTTTTCC------TTTTTGTGTGTGTCTATATGACAAGAT GG--ATGCTAG-TAAATTTTTTGTGGTCATCATTTGGCAATATAT--GTTGGTCAAATCATTAT--------------GC TTAT-ACAGTGCTG--TATGTCAGTTATGACTCAGTAAAACTGC---AAGGAAA-AAGAAAAGCATGAGTGAAATACA-- ---------------TGCTTGCACTTGTGTGCCCTGGAG--GACAAA-----AAG---GAAGGACCACCCTGGG---TGT TTGTGGTACA-------------------GGTGGGCTGTGGACCGCATCCTAGTCATGTTGTCTGGTGATGGCAAGCTCT CAGGTGATCAGAATG--CA-CAGCACGAGGCCTGCTGGTTTAGTTGTGGAC >Felis_catus CAGACCAGTGTAATCA----GTTTCTGGGGGTGAGGCCAGCGCTTTCTTGGCACCTTT---TAGAAGA-ATC-----CCA GG--------------------GGTGGAGGGATTGAACGTAGG-GGTCAGAAGGTAC-AGACTTTAAGTTAT--AAAATA -ATTAAATACTGAGGAAGTAACATACCGCATGATGACTATAATTAACA---CTGTGTGGTATATTTGATAATTGCTAAGA GAGTAGATCCTAAAAGTTCTCATCACAAGGCAAATAAACATTTTTTCCTTTTTTTTTTTTTTGTATCTATATGAGATGAT GG--ATACTAACTAAATTTATTGTGGTAATCATTTGGAAATATAT--GTAAGTTGAATCAGTAT--------------GC CTAT-ATAGTGC----CATGTCAATTATAACCCAATAAAACTGG---AAGAAAA-AAGAAA------AGCAAAATAAA-- ---------------TGCTT---GTTGTGTGGCCCAGGG--CACGGGGGTGAAAG---GAAGAACCACCCCAGG---TGT CCGTGGCACCACACTGCAGTCAGATCGGTGGGGGGCTGTGAACCGCACTGTAGTCGAATCATCTGGTAAGGGCGAACACC TGGTGGGTCAGTTCG--CC-CGGCGTGAGA---GCCGGTTTAGTTGTAGAC >Manis_pentadactyla CCCATCAGCCACATCA----GGTTCT-GGGGTGCAGCCAGAGA---CTCTACCCCTTT---AACAAGA-ACC-----CTA GA-------------GGC--GGGGTGGGAGAATTGGCTGAAGGCTGCCAAAAGGTAC-AAGTTGCCAGTTAT--TTGGTA -AATAAGCCCTGGGGTTGTAATGTACAGCAGGAGGACTAGCGTTAACACTGCTGTGGGACATATTCGAAA---------- ---------------GATCTCATCATAAGGAAAGAAACATTTTTT--------CATTTTTTTGTATCTGTATGAGGTGAC AG--TTGTTAACTAAACTTACTGTGGTAATCATTTCAAAGTATCT--GTGAGCCAAGTCATAATGCAGTACAATTTAGAT TTAT-GTAGTGCTG--CATGTCAATTATGTCACAATAAAGCTTG---AAGAAAA-AT-AAAAGCACGAGCAAAACAAA-- ---------------TGCTTATTGTTCTGTGCCTTGGGA--AAAACA-----------AGAGAACCACCCCAGT---TGT TCCTGATACA---------------------TGGGCCATGGAGGGCGC--TGGACAAATCAT-TGGGAATGGGCAGCTGT TGGTCGGTCAGAGCA--CA-T-GCATAAGGAGT-TCAGTTTGGTTGTGGGC >Sus_scrofa CACACCAGCTAAATCAGAGTGTTTCTAGGGATGGGGCCAGAGA-----CTGCACCTTT---AAGAAGA-ACC-----CTG TG-------------------------AGGGATTGGATGAAGATGGTCAAAAGGTAC-AGGCTTCTGGTTAC--AGGATG -ACTCTGTCCTGGGGCTGTGATGTACAGCATG---ACTGTAGTTAACACCGCCTGACGGTACATTTGAAAGTTGCTGAGA GAATAGATCCTAAACG-TCTGATCACAAGGAATAAAATCTTTTTTTTT-----TTTTTTTTGGTCTC----TGAGATGAT GG--AGGTTAATT--------TATTGTAATCGTTTCACAATCTGT------GTAAGGTGTTTATGCTGTACACCTTAAAC TTATCATAGGGTTA--TATGTTAATTATATCTCAATAAAACCAG---AAGAAAA-A--AGAAGCATGAGCAAAAAAAAAA AAAAAAAAAAAAAAGTGCTTATTGTTTTGTGTTCCACAG--GGAGAAA----------ATAAAAGTACCCCAGG---TAT TTGTGCTTCA-------------------GGTGGGCCAGTCACG------------------------------------ -----GGTCAGAGTGCACAGCAGCAGCAAGCACGTGGCTCTGGTTGTGGGC >Bos_taurus CACACCAGCCGGATCAAAGCCTTTCTAGGTGTGGGGCCAGAGA---CTCCGCACCTTT---AGGAAGA-ACC-----TCG GG-----------T-GG---GCCCTGAGAGGGTTGGATGAGGGCGGTCCAAAGGTGC-GGGCCTCCAGTTAG--AAGGCA -AGTAAGTATTAGGGATGGCGTGGACAGCACG-TGACTGTGATGAGCTCTGCTGTGCCGTGTGTTTGAAAGTTGCCAAGA GAGCAGATCCTGAAAG-TGTCATCGCAGGGAAAAGC-----------------CTTCCTTTTGTGTTTGTATGAGGTGAC GG--AGGTTAGTTACTT---------TAATCATTTCCAGATAGAT--GTA-----------TGTGCTGTGCACCTCAAAC TTAAAACAGCATCG--TACGTCAGTTACACCTTGATAAAACTAG---AA-----------AAGCGGGAGCAGGAGAAA-- ---------------CGCCGATTGTTACCTGCCTC------------------------CGTGTCCGCCCTAG------- ------------------------------CGGGGCCGAGGACC--------------------GGTGCTGGAGAGCCCC CTGGCGG----------CG-----GTGAGCCCGGCTGGTCACGCCGCGGGT >Equus_caballus CACATCAGCCAAATCAAA--GTTTCT-GAGATGGGGC-AGACA---CTTTGCACCTTT---AAGAAGA-ACC-----CCA GG---------------------------------GTCAGAGGTGGTCAAAAGGTTCAAAACTTCCAGTTAT--AAGATA -AATACATCCTGAGGATGTAATGTACAACATGATAACTATAGTTAACACCGCTGTATGATATATTTGAAAGTTGCTAAGA GAGTAGATTGTAAAAGTTCTCATTACAAGGGAAGAAA------------GTGGGGTTTTTTGGTATCTATATGAGATGAT GG--ATGTTAACTAAACTTACTGTGGTAGTCATTTCACAATATGT--GTAAGTAAAGTCGCTATCCTATACACCTTAAAC TTAC-ACAGTGCTG--TATGTCAATTATAGCTCAATAAAACTGG---AAGGGAA----AAAATCATGAGCAAAAGAAA-- ---------------TGCTTATTATTGTATGCCTCAGGA--AAAAAAACAGAA-----GAACCACCACCCCAGG---TTG TTATGATACA-------------------GGTGGGCCATGGACCACACTGTAGACAGATCCTCTGGTGCTGGCAAGCTCT C----GGTCAGAGTG--CG-CAGCGTGAGGAGTGTTGTTTTGGCTGTGAGC >Ceratotherium_simum CACACCAGCCAAATCAAA--GTTTCTGGAGGCGGGGCCGAAGA---CTCTGCACCTCT---ACGAAGA-ACC-----CTA GG---------------------------------GGTAGGGGTGGTCAAAAGGTTCAAAACTTCCAGTTAT--AAGATA -AATAAACCCTGGAGATGTAATGTACAACATGAGGACTATAGTTAACACTGCTGTATGATACATTTGAAGGTTGCTAAGA G--TAGATCCTAAAAGTTCTCATCACAAGGGAAGAAACGTGTTTTTTTTTTTCTTTTTTTTAATATCTATATGAGATGAT GG--ATGTTAACTAAACTTACTGTGTTAATCATTTCACAATATAT--GTAAGTAAAGTCACTGTACTGTACACTTTAAAC TTAT-ACAGTGCTA--TATGTCAATTATATCTCAATAAAATTGG---AAGAAAA----AAAATAATGAACAAAATAAA-- ---------------TGCTTATTATTGTATGCCCCAGGG--AAAAAATA---------GAACAACCACCCCAGG---TTT TTATGATACA-------------------GGTGGGCTGTGGACCACACGGTGGACAAATCTTCTGGTAATGGCAGGCTCT TGTTTGGTCAGAATG--CA-CAGCGTGAAGAGTGTGGGTTTGGCCATGGGC >Condylura_cristata CTCACCAGCCAAATCA----GCCTTTGGGGG-AGGGCCACAGA-----CTGCACCTTT---AAGGAGA-ACCGAGGGCCA GG-----------C-AG---TGGGTGGAAGGACTGGCCCAA-GCGGCCAAGGGGCAT-AAACTTCTGGT-----GTGATG TCTTAAGTCCCGGGGATGTCATGTACAGCGTGGTGCCTGCAGTTAACC-----------------------TCTCTAAGA GAACAGATTCAAAATGTTTTCATCACAAGAAAGAAATC----------AGTTG-----TTTTTTATCTTGGTGCGATGCT G---ATGTGAGCTAAGCT---TGCAGTAATCGTTTCATGACGTGC--GTAAGTCAGCTCATCCTGCTG--CGCCTGCGCC TTGC-ACAGTGCGAGCTGAGGCAGCGCTGTCCCAGCACGACTGGTGTGGGGGGC-GAGGGGAGCATGAGCAAAATAAA-- ------------------TCCGCGTCGTGCACCCCAGGG--CAAAG---------------------------------- --GTGATGCT-------------------------------------------------TGTCTGACGGTGGCCAGC--- ---------------------------------GCCAGTTTGCTGGTGGAC >Scalopus_aquaticus ATCACTAGCCAAATCA----GCCTTTGAGGGTGGGACCAGAGA-----CTGCACTTTT---AAGAAGACCCCCAAGGCCA GG-----------A-GGTATTGGGTGGGGGAACTGGCTGAAGGTGGCCAAAGGGCAT-AAACTTCCGGTGAT--GTGATA TA-GAAATCCTGGGAATGTCATGTCCAGCATGGTGCCTGCAGTTAACACCTCTGTGTGGTGTATTTGAAAACTGCTAAGA AAACAGATTCAAAATGTTTTCATCACAAGGGAAAAATC----------AGTTGTTGCTTTTTGTATCTCTGTGAGATGTT GG--ATGT---TTAAGCT---CGCAGTAGGCATTTCACGGTATGG--GTAAGTCAAGTCATTATGCTA--CACCTGAACC TTAG-ATGGTGCTTGCCAATGTCA-GTTACCCCAATAAAACTGGTGTGGGATGTGGAGAGGAGCATGAGCCAAATAAA-- ------------------TTCGTGGCATGTGCCTCAGGGGAAAAAGGTGA---------------------------TGC TTGTCTGAC--------------------GGTGGACTGGGCATCACACTGGTGACAGAG-GTCTGGCAAT-ACAGGCCCT CCTCTTGTCAGAATG--CC-CAGCGGGGCCAGTGCCGGTTTGGCTGTGGTC >Myotis_myotis CACACTAGCCAAATCAAA--GTCCCTGGGGGTGGGGCCAGTGA-----GTACACCTAT---AAGAAGA-ACT-----CCA GG------------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------TGT TTGTGATGCA-------------------GGTGGGCTGTGGACCACACTGTGGAGAA---GTCTGGTAATGGCAAGCTGT CGGGTGGTCAGAACG--CA-CAATGGGAGGAGTGTCAGTTTGGTTGTGGGC >Rousettus_aegyptiacus CACACCAGCCAAATCAAA--GTGGCTGGGGGTGGGACCAGAGA---CTCTGCACCTGT---GAGAGGA-AAC-----CCA GG------------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------TGT TTATGGTGCG-------------------GGTAGGCTGTGGACCACACCACAGGGCATCCGTCTGGTAACGGCGAGCCGT CCGTCGGTCACAGCA-----CTGTGTGAGATGTGCCAGTTTGGTTGTGGGC >Homo_sapiens CACACCAGCTAAATTGAA--GTCTCTAGGGGTGGGCCTAGAGA---CTCTGCCCCTTT---GAGAAGG-ACC-----TGG GG------------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------TGT TTGTGGTGCA-------------------GGTGATCTGTGGACCACACTATAGAGAAACCATCTGGTAATGGCAAGTTTT CAGTGAGTCAGAATGCACA-CAGCATGAGGAATGTTGGTTTGTTTCTGGAC Dog393_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------TTTTTCCAGCTTTATTGAGGTATAATTGAC---AAATAAAA-ATTGTAT ATATTTAAGGTGTACAACGTGATGTTTTGATATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATAT CCATCACCTCACATAGTTACCATTTTTTTGTGTGTGGTGAGAACACTTAAGATCTACTC--------------------- -------------TCTTAGCAAATTTCAA--------------------------------------------------- ----------------------- >Canis_familiaris GGCA-CAAACTTTATCTAATTACTCTCTACTCTGAGCACTCTACTCACTTAAAAGATGTTTTTTGCATGTAAGGTTTCTG ATGTAGGGAAGTAGCAATGAGTATGAGTGCATAAGCTATAGTAATATTTCTCAAACTTTAAT------------------ -----------GTTTCTCAA--ATTTTT----TT--CCAGTTTTATTGAGATATAATTGGC-----ATGCAGCACTGTAT AAATTTAAGGTGTACAGTGTAATGATTTGAATTATAAAT--ACTGTGAAATGATTA--------------------ACAT CCATCATCTCATATATACAAAT-----------------ATATATATATATATATATATATATATATACACACACACACA TACACATAATACATATT---------------TGG-TCCTC----TTTT---TCAAAT-TGTGAAAGTTTGTTCACTTGC AAAGTCTAGGGTCCTATGTACAG >Felis_catus AGCA---------------------------------------------------------------------------- ------------------------------ACCAATTACAAGATTGCTTCTCCAACTTTAGC------------------ ---ATA------------AT--GCTTTT----TT--CCAGTCTTATTGAGATATAATTGAC-----ATACAGCACTGTAT AAGTTTGTGGTATACAGTATGATGA-TTGACTTACATAT--ATCATGAAATAATTGCCATCA-CAGGTT-----A-ACAT CCATAATCTCATATAGGCACAC----------------AAAAAAGAAAAGAATATATATATATATATATATATATATATA TATATATATATA-TGTT---------------CTT-TATTCCAACTTTT---TCAAAG-TGTG-CAGTTTGTTCACTTGC AAAGCCTTGAAGTCTATGTATAA >Manis_pentadactyla GCTA-TAAGCTTCA-----------------------------------------------------------GTACCAA ATGT--------------------------ACAAGCTATAGTAATATTTCTCAAACCTTAAT------------------ ---GTAG---TGTTTATCAAACACTTTT----ATCTCCAGTTTTATTCTGATGTAATTGGC-----ATATAGCACTGTAT AAGTTTAGGGTATATAGCATAATTATTTGACTTACATAT--ATTGTGAAATGATTACCACAA-TGAATTTAGCTA-ACAG CCATTATCTCATATAGATACAA-----------------AAAAAGAAAAAAATGCATATAA------------------- -------------TTTT---------------GGT-TTCTCAAACTTTT---GAAAAT-TGTGAAAGGTTTTCCACTTGT AAAGTACAGGGTCCTACATACAG >Sus_scrofa GATA-CAATCCTCA-----------------------------------------------------------ATGCTAG ATGT--------------------------ACAAACTATAGTAATATTTCTTAAGCTTTAGT------------------ ---GTAG---TTTTTCTCCA--ACTTTT----CCC-TTAGGTTTATTGAGACATAAATGAC-----ATACAGCACTGTA- AATTTTAAGCTGTATAA----------TGATTTATGTAT--ATCACAAAATGATTACCACAA-TAAGTTTA-------AT CTATCATTTCATACAGATAACA-----------------AAAAAGATAAATATT-------------------------- -------------TTTT---------------TAT-TTCTCTAAATGTT---GTAAAC-TGTAAAAGCTTGTTTACTTGC AAAGTCCATGGTCCTATATTCAG >Tursiops_truncatus GTTA-CATCTCTCA-----------------------------------------------------------GTGTCAG ATGT--------------------------ACAAGCCATAGTAGTATTTCTCAAGCTTTAGT------------------ ---GTAG---TGTTTCTCAA--ACTTTT----TTC-CCAGGTTTATTGAGATATAAATGAC-----AAAAAACCCTGTGT AAGTTTAAGGTGTACAGTATAATGATTTGACTTACATAT--ATTGTGAAATGATTACCACAGTTAAGTTTAGTTA-ACAT CTATCATTTCATACAGATAACA----------------AAAAAAGAAAAGAATATTT----------------------- -------------TTTT---------------TAT-TTCTCAAACTTCT---GTAAAC-TGTGACAGCTTGTTTACTTGC AAAGTCCAGGGTCCTACCTACAG >Equus_caballus GGTA-CAAGCCTCA-----------------------------------------------------------GTGCCAG ATGT--------------------------ATAAGCCAGAGTTATAGTTCTCTAACTTTAGT------------------ ---GTAG---TGTTTCTCCA--ACTTTT----CCCGCTAGTTTTCTTAAGGTATAATTGACATACAATACAGCACTGTAT AAGTTTAAGGCGTACGGCGTACTAATTTGACTTATAT----TTAGTGAAATGATTACCACAA-TAAGTTTAGTTA-ATGT CCATCAT-TCGTATAGACATAA----------AAAGAAGAAAAAGGAAAAAATGCCTATT-------------------- -------------TTTT---------------TGT-TTCTCATACTTTT---GCAAAT-TATGAAAGTTTGTTCACTTGC GAAGTCCAGGGTCCTACGTGTAA >Ceratotherium_simum GGTA-CAACCCTCA-----------------------------------------------------------GTGCCAG ATGT--------------------------ACAATCTGGAGTAATATTTCTCAAACTTTAGTAGTTTGAGAAACTACTAA AAAAGTT---TGTTTCTCAA--ACTTTT----CCCCCCAGTTTTATTAAGATATAATTGACATACAATACAGCGCTGCAT AAGTTTAAGGTCTACAGCATAATAATTTGACTTAT------ATCATGAAATGATTACCACAT-TAAGTTTAGTTA-ATGT CCGTCAT-TTATACAGATACCA---------------AAGAAAAGAAAAAAATACATATT-------------------- -------------TTTT---------------TGT-TTGTCAAACTTTT---GCAAAT-TGTGAAAGTTCATTCACTTGC GAAGTCCAGTGTCCTATATTTAG >Myotis_myotis GGTA-TAACCCTCA-----------------------------------------------------------GAGTCAG ATGT--------------------------ATGAGCTATAGTAATATTTGTCACACTTTAGT------------------ ---GTAG---TGTCTCTAAA--AGTATT----TTT-ATAGTTTTATTGAGATATAATTCAT-----ATACAGTGCTATAT AAGTTCAAGGTGTAT-GCATAATGATTTTACTTACATAC--ACTGTATAATGATTACCACAA-TAAATTTAGTTA-AAAT CCATCATCTCATCTAGATACAA-----------------AAAAAATAAAAAATGTGT----------------------- -------------TTTT---------------TGT-TTCTCAAAGTTTT---ATTAAT-TGTTAAAGTTTATTTATATGC CAAGTTCAGGGCACTATATACAG >Rousettus_aegyptiacus GGGA-CAACCCTTC-----------------------------------------------------------GTGCCAG ATGT--------------------------ACAAGCTATAGTAATATTTCTCAAACTT---------------------- ----TTG-----------------------------CTAGTTTTATTGAGGTATAATTGGC-----ATACAGCACTGTAT AAGTTTAAGGTGTACAGCAGAACAATTTGACTTACATAT--ATTGTGAAATGATTACCACAA-TAAGTTA------ACAT CTATTATCGCATATAGATATGA----------------------AACAATTGTACATATT-------------------- -------------TTTC---------------TGT-TTCTCAAACTTTT---ACAAAT-TGTGAAAGTTTGTTTACTTTC AAAGTTCAGAGTCCTACATATAG >Condylura_cristata GGAT-TAAACCTCA-----------------------------------------------------------CTGCCAG ATGTATAGTA-----------------CAGATGTACTATAGTAACATTTCTCTAAATT---------------------- ----TAG------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------TG--TTCCAAAACTTTT---GAAATTGTATGAAAGTTTGTTAACTTAT ACAGTCCAGGTTCTTATACATAG >Uropsilus_gracilis GTATATAAAT----------------------------------------------------------------TGCCAG ATGTACAA--------------------------ACTATAGTCATATCTGTCAAATTT---------------------- ----GAA------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------TGT-TTCCTAAAATCTT---GAA--T-TATGAAAGTTTATTCATTTGC AGGTTTCAGGATCTTACATATAG >Homo_sapiens AGTA-CAAACTTCA-----------------------------------------------------------ATGGTAG ATGT--------------------------ACAAGCTATAGTAATATTTCTCACAATTTAGT------------------ ---ATAG------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------TGTTTTCTCAAACTTTT---TCAAAT-TATGAAAGTTTCTTAACTTCC AAAATCTAGGGTACTCTATATGG Dog395_LINE >L1MA9_3END -------------------------------------------------------------------------------- ----------------------------------------------------------------TTTTTCCAGCTTTATT GAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGT----ACAACGTGATGTT-------TTGATATACGT--- ---------------------ATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAG TTACCA---TTTTTTTGTGTGTGGTGAGAACACTTAAG------------------------------------------ --------------------------------- >Canis_familiaris AATTATTGTTAT--------------------------TAATAATCCTATTGATTTGTAGGAAACCTT------------ -----------------------------------TTGCT----------------TTTTT--------CTAGTTTTATT GATACATAATTGACAT---AAAATTGTA-----TTAAAGTAT----ATAAAATAGTGAT-------TTGATAT-TGT--- ---------------------GTATATTGTGAAATGATT------GTAAGTTTAGTTAAC--ATCTATCACCTCATATAG --ACAACTTTTTTTTTTATTGTGATGA--------------TTAAGTACTTTTT---GCTTAATTTTTTTTTTCACCTAG TTTGCTTTC-CTTTTTAGACTGAATCTGGATAT >Felis_catus AATTTTTGTTA---------------------------CAATCACCTTATTTATTTATGGGAAAC-TT------------ -----------------------------------TTGTTTGCTC---TTAAGTGTTTTTT--------CCAGTTTTATT GATATATAATTGACATGT-GACATTGTA-----TTAAAGTGT----ACAACGTAATGAT-------TTGATATATAT--- -----------------------GTATTGTGAAGTGAATATTGCGATAAGTTTAGTTAAC--ACCCATTACCTCAC--AG TTACAA--CTTTTTTTTCTTGTGATAA--------------TGAAGTATTTTTT---ATTTAA-CTTTTTTTTCACTTAG TTTACTTTC-TTTTTTAGACCGAATCTGGATAT >Manis_pentadactyla AATTACTGTAA----------------------------AATAGCCTTACTAATTTGTAGGAAAATTT------------ -----------------------------------TCATGTTCTC---TTAAGTATTTTTT--------CCAGTTTTACT GATACATAATTGACATGT-AGCATTGTATTAGTTTAAAATGTACATACAACATAATGGT-------TTGATATAAGT--- ---------------------GTA-ATTGTGAAATTA-TACCACAACAAATTTAGTTAAT--ATCAATCACCTCATATAG TGACAA------TTTTTTGTGAGATGT--------------TTAAGTATTTTAA---ATTTAC--TGTTCTTTCACATAG TTTACTTTT--TTTTTAGACTGAATCTGGATAT >Sus_scrofa AGTTATCA------------------------------CAGTAACC-----------TAGGAAAAATT------------ -----------------------------------TTGTTTTCTC---TTAAGTA-TTTTT--------CCAGTTTTGTT GAGATATAATTG----GT-AACATTGTATCAGTTTAAGGTTT----ATAACATAATAAT-------TGGATAC------- -------------------------------------------------------TTAAC--ATCTACCACCTCACATAG TTAAAAAAAATTTTTTTCTTGTGATGA-------------------TATTTTTT---ATTTCC---TTCTTTTCATGTAG TTTACTTTA-CTTTTTAGACTGAATCTGGATAT >Tursiops_truncatus AATTATTGTTACGGTAACCTTAACAAAAAATTTTTTTGCAGTAACCTTATTAATTTATAGGGAAACTT------------ -----------------------------------TTGTTTTCTC---TTAAGTA-TTTTT--------CCAGTTTTATT GAGATATAATTGATATAT-AACATTGTATTAGTTTAAGGTTT----ACAGCATAATTAT-------TGGATATATGT--- ---------------------ATATATTGTGAAAGGATTACCATAGTAAGTTTAGTTAAC--ATCCATAACCTCACGTAG TTAAAA--AGTTTTTTTCTTGTGATGA--------------TTAAGTATTTTTT---ACTTAA---TTTTTTTCATGTAG TTTACTTCC---TTTTAGACTGTG-------AT >Equus_caballus AATTACTGTTA---------------------------CAATAACCTTATTAATT-ATAAGAAAACTT------------ -----------------------------------T---TTTCTA---TTAAGTATGTTTT--------CTAGTTTTATT GAGATATAATTGATGTAT-AATATTGTATTGGTTTAGGGTAT----ACAGCATAATGAT-------TTGATATGTGT--- ---------------------GTATATTATGAAATGATTACCACAGTTAAT----TTAAC--ATCCTTGGCCTCAC--AG TTACAA---ATTTTTTTCTTGTGATGA--------------TTAAGTATTTTTT---ATTTAA---TTTTTTTCATGTAG TTTACTTTC-TGTTTCAGACCGAATCTGGATAT >Tapirus_indicus AGTTATTGTTA---------------------------CAATAACCTTATTAATTTATAGGAAAACTT------------ -----------------------------------TTGTTGTCTC---TTAAGTATTTTTT--------CCAGTTTTATT GAGATATAATTGACATAT-AACATTGTATTGGTTTAAGGTAT----ACAACATAATGAT-------TTGATATGTGT--- -----------------------ATGTTATGAAATGATTACCACAATAAGTTTAGTTAAC--ATCCATCACCTTAC--AG TTAACA--GATTTTTTTCTTGTGATGA--------------T----TATTTTTT---ATTTAA---TGTTTTTCATGTAG TTTACTTTC-TTTTTCAGACTGAATCTGGATAT >Myotis_myotis AGTTTTTA------------------------------TAACAGCCTTATTACTTTATAGGAGAACTC------------ -----------------------------------TTGTTTATTC---TTAAGTA-TTTTT--------CCAGTTTTATT GAGGTACAATTAACATAT---TCTAGTAGCAATTTAAGGTGT----ACAACATAATGATTGTAGCATTTATATATGTCAG CAGGGTGTACAACAAGCACACATATATAGTGAAGGGATT---ACAATAAGT----TAAAC--ATCTATCATCTCACACAG TTACAA-----TTTTTTCTTGTGATGA--------------TTAAGTAGTTTTT---CTTTAATTTTTTTTTTCATGTAG TTTACTTTC-TTTTTTAGACTGAATCTGGTTAT >Rousettus_aegyptiacus AATATTTA---------------------------------TAGTCTTATTGACTTGTAAGAAAACTT------------ -----------------------------------TTGTTTCCTC---CTATGTACTTTTT-----------GGTTTATT GAGCTATAATTAACGTAT-AACCTTGTATTAGTTTAAGGGAT----ACAACATAATGAT-----------TATATGT--- -------------AGTTGCACATATAGAGTGAAATGATTAGGACAATAAGTTTAGGTAAC--ATCTATCACCTTACAAAG TTACAG----TTTTTTGTGTGTAATGA--------------TTAAGTATTTTTT---TCTTTA-----ATTTTCACGTAT TTTACTTTC-TTTTTTAGACTGAATCTGGTTAT >Condylura_cristata AATTGTTA------------------------------TGTTTACCATACCAGTTTGTAGGGAAACTT------------ -----------------------------------TTG-ATTCAC---TT-------TTTA------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------ATTTAA--TTTTTATTCATGTAG TTTGCTTTCTTTTTTTAGACAGAATCTGGATAT >Sorex_araneus AATTATTGATA---------------------------TACTAACC-TAACAATTAAGAGTATAACTTTTATTATTTCTT AAGTAGTTTTTAGGTTTTGTTGCTTTTGGGGTTTTTTT-GTTTGT---TT-------GTTT------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------GTTTGT--TTGTTTTTCATGTAG TTTACTTTC-TGTTTTAGACTGAATCTGGATAT >Homo_sapiens AATTGTTA------------------------------TAATAACCTTGTTAATTCATAGGAAACCTT------------ -----------------------------------TTGTTTTCTC-----AAGTATTTTTT------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------ATTTAA--ATTCTTTTCACATAG TTTACTTTT-TTTTTTAGACTGAATCTGGATAT Dog400_LINE >L1_CARN7_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --CAGAGAAAGACAAATACCATATGATTTCACT-TATATGTGGAATCTAAAAAAC----------------------AAA ACAAATGAACAAAAAAAA---------ACAAACCAAA------CAGACTCATAGATACAGAGAACAG---ATTGGTGGTT GCCAGAGG--GGAGGGGGGTTGGGGATGGGT------GAAATGGGTGAAGGGGGTCAAGAGGTACAAACTTCCAGTTATA AAATAAATAAGTCATGGGGATGTAATGTACAGCATGGN-GAATATAGTCAATAATATTGTA------------------- ----------------------------------------------NTAACNTTGTATGGTGACAGATGGTAACTAGACT TATTGTGGTGATCACTTCACAATGTATACAAATGTCGAATCACTATGTTGTACACCTGAAACTAATATAACATTGTATGT CAATTATACTCAAAT------AAAAAAA---------------------------------------------------- -------------------------------------- >Canis_familiaris ATCATGTGGAGTGAT----GGAAAGGTGAGTAGAATCGAGAACACTAGGAATTT---AAAAGTACACA-TTAGAA---GT TCTCATCACATACATAAA------TTTATAACTATGTATGGCGATGGATATT--AAC-AAGATTTCTTGTGACGATTATT TCCAAATATGTACAAACATTGAATCAGTATATTGTATATCTG-AAACTAATATAC---------CTGCTATAAGTCAAAT ATACCTAAATTGAAAAAATAAAATAAAATCAACAAAAAGA---GCAACTTAGGGATACAGAT-------------TGGTT GCCATGGGC---------AATGGTAGTCAT-------GGCATGGGTGAAGAGGGTTAAAAGGTACAAACTCATAGCT--- --ATGGATAAGGCCTGGAGACATAATGTATGGCAGGAT-GACT------------------------------------- ------------------------------CAAGAAAAA---GGATGTAACT--GTGTGGTGACAGATGTTAACTTTACT AATGGTGTTATT---TTCACAATATATACAAAT-----ATCACTATGTTGTACACCTGAAAC----ATAATGTTGCATGT CAATTATATCTAAATTTTTACAAGGGGAATAAGAGGACAAA---AAAATACACGTTTGGGA---GTTAGACATGACTTTT --CTCATATCTTGACTCTGCT--GCTGTCACTTTAATC >Felis_catus ATCATGTGGGGTGAT----GAGAAGCTGATTAGAATGGAAACGAATAGGAATTT---AAAAGTACACA-CTGAAA---GT TCTCATCACATACACACACACACATCTGTGACTATGTATGGTGATGGATATT--AAC-TAGATTTGCTGTGGTGATTATC TCTGAATATGTACAAATGTGGAACGATTACATTTTACACCTG-AAACTAACATA----------CTGTT-TATGTCAAAT ACACCTAAATGAAAAAAAAATAAAATCGTAACCAAAAAAAG--CAAGCTTATGGATCT-------GG---ATTGGTGGTT GCTAGTGGC------CAGAGTGGTAG----T------GGAATGGATGAAGGGAGTTAAAA--TGCCAACTTCCAGTT--- --ATAAATAAGCCATGGAGATGGAATGTATGGCAGGGT-GGCTATAGTTCTTGATACTGTGTTGTGCATTTGAAAGTTGC TGAGAGAGTAGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Manis_javanica ATTATGTGGAGGGAT-GGTGAGGAGGAGGATA-----GAGACCAATAGGAATTT---AAAAGTACATA-TTTAAA---GT TCATATCATGAGAAAAAA------ATTGTAATTATATATGGTGAC--ATGTT--AAC-TAGACTTACTGTAGTAATTATT TCATAATATATATAAACATTGAATCATTATGTTGTATACCTG-AAACTGATAC--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------TATATA TAATTATATCCATGTTTTTATAAAGGGG----------GGA---AAAGTACATGTTTGGGA---GTCAGACGTAAGTTTT ---TCATATCTTGGCTCTGCC--TATGTGACTTTGAAC >Sus_scrofa CGTGTA-GGGATGCT-GAGGGGGAGGTGGTCAGAATAGAGACTAATAGGAATTT---AAAA-TACATATTTTGAA---GT TATCATTACAAGAAAAAT--TAATTTTATAACTATGAGTGGTGACA-GTGTT--AACATAGACTTACTCTGGTGTCCCTT CTACAACATACACAAATATCTAATTA--------------TG-AGGCTGACCT-----------TTAATATGTAGCAATT GTAA-TCAGTGAAAACAAA------------------------CAAGATGACGGGTACAGAG-GCAG---ATTGATGGTT GCCAGAGGCAGAGGGTGGGG-----------------GAAGCAGATAAAG------------TGCAAACTTCCAGCTATA AAATAA---------------GTAATATGCAACATGGC-AACTATACTTAATAATACTGTATTGTACACTTGCATGTTGC TGAAAAAGTAAGTTTTAAAGGTTCTCATCACAACGAAAAAT-AATTATAACTGTGTATAGTCATGGATGTTAACTAGACT TATTTTAGTGATCACTTTGTAGGACTTGGAAGTTTGAAATCATTATTTTGTACACCTGAAATGAATATAATATTCTATGT CAATTATATCT--GTTTTTTAAAAGAGGAAA-------------AAAGTACATGTTTGGGA---GTCAAACAATATTTTA ---ACTTATCTTGGCC-------TATGTGACATTAAAC >Bos_taurus GTCATGTGGGGTGCT-GAGGAAGAGGTAGGTAGAAT--AAACCAGTAGGAATTA---AAAAG-ACATGTTTAAAA---GT TCTCATTACAAGAAAAAA--TAATTTTGTAACTATGTATGATGACA-GTGTT--AAC-TAGAGTTACTGTGGTGTTCATT TTGCAATATATATAAATATCTAATCAATA-GTTTTACACCTG-AAACTAA------------------TATATGTCAATT ACAACAAAATAAAAACAA---------ATAATCAAAGGG-------GGTGATGAATACAGAGAACAG---ATTGGTAGTT GCCAGAGGTGGGGTGGTGGGTAGTGGTGGGTGTTGAAGAAATGAGTTAAGGATGTTAAAAAGTACGAGCTACCATATATA GAGCAA---------------GTAAAGTACAACATGGC-AACTAAGGTTAATAATACTGTGTTGTATATTTGAAAGTTGC TAAAAGAGTAGATTTTAAAAGTTTTCATCACAAGAAAAAATTGTTCACA------TACAGTGATGGGTGTTAACTAGACT TATTGTAGAGATCATTTTGGAGTACATACAAATGTCATATCATTATTTTGTATATCTTAAACTA----AATGCTGTATGT CAATTATATCTTTTTTTTTTTTAAAGGAGGGGAA----------AAAGTACATGTGTGGGA---GTCAAACACAGCATTT --TACTTGTCTTGACTCTGCC--TATGTAAGTTTAAAC >Equus_caballus ATTTTGTGGGATGAT-GGGGAGGAGGTGGGTAGAATAGAGATCAATAGGAAGAT---AAAAGTACACA-TTAAAA---GT T---ATAACAAAAAAAGT-------TTGTAACTATGCATGGTGACGTATGTT--AAC-TAGACTTATT---GTGATAATT TCACAATATATGCACATATTGAATCACT--GTTCTACACGTGTAGGATATTATACACGTGTAGGATATTATATGCCAATT ATACCTCAATAAAAACAAAA-------ACAAACAAAAAGATACCAAGCTCGTGGATTCAGAGAACAG---ATTGGTCGTT GCCAGAGGTGTGGGGTGGAGTGGTGGGGAGT------GAAATGGATAAAGAGAGTTCAAAAGTATAAACTTCCAATTATG AGATGAATAAATCATGGGGATGTAATGTACAGCATGGCTGACTGTAGTTAATAATACTGAGTTGTCTATATGAAAGTTGC TGAGAGAGTAGATCTTAAAAGTTTTCAGCACAAGAAAAAAATTTTTGTAACTATGTATGATGATGGATGTTAGCTAGACT TATTATGCTAATAATTTCACAATATATACAAATATCGAACCATTATGTTGTATACCTGAAACTAACATAACGTTATATGT CAGTTTCATCTAAATTTTTCAAAAGGAGAAA-------------AAAA--------GGGGA---A--------------- -----ATATCTTGGCTCTGCC--TTTGTGATTTTAACC >Tapirus_indicus ATTATGTAGGTTGTT-GGGGAGGAGAGGGGTAGAATAGAGACCAATAGGAATTT---AAAAGTACACA-TTAAAT---GT TCTCATCATAAGAAAACA---AAATCTGTAACTATGTATGGTGACAGGT--T--AAC-TAGACTTATTGTGGTGATCATT T-----------CACATGTTGAATCATTTTGTTTTACACTTG-AAGCTAATATA----------ATGTTATATGTCAATT ATACCTCAAGAAAAACAAAA-------ACAAGCAAAAAAATACCAAGCTCATGGATATAGAGAAAAG---ATTGGTGGTT GACAGAGGTGTAGGGTGGGGTGGTGGGGGAA------GAAATGGGTGAAGGGAGTTAAAAAGTGCACACTCCCAATTATA AGATAAATAAATCATGGGGATGTAATGTACAGCATGGT-GACTATAGTTAATAATACTGTATTGTGTATTTGAAAGCTTC TGAGAGAGCAGATCTTAA--GTTTTCAGCACAAGAAAAAAA-TTTTGTAACTATGTATGATGATGGATGTTAACTAGACT TATTATGCTAATCATTTCAAAATATCTACAAATATTGAATCATTATGTTGTACACCTGAAACTAATATATCATTATATGT CAATTATGTCTAAATTTTTAAAAAGGAGGAA-------------AAAGGGTATGTTTAGGA---GTCAGACATACCTTTT --TCCATATCTTGTCTCTGCC--CATGTG-CTTTCAAC >Myotis_myotis ATTAT-----------GGGGAGAAGGTG----------AGACCAATAGGAATTA---AAAAGTATATG-TTAAAT---GT CCTCGTCTCAAAAAAAAA-------TTATAGCTGTGTCTGGTGATGGATGTA--AAC-TAGGTTTATT---GTGATCATT TCACAATATACATAAATATTAAGTAATTATGTTGTACATCAG-AAACTAACATA--------------------TCTATT ATACCTCAATTTGAAAAA-------------------------TGAGCAAATGGAATCAGAGAACAGATTATTGGTGGGT GCCAGAGGTTGGGGGAGGGAAGGC-------------AAACTGGGTGAAAAGGGTTACAA--TACAAACTTCTTGCTGTG AAATAAATATGTCTTGGGAATGTAATATGTAGCATTAC-GTTTAT-GTTCATAATACTGTATGGTATATTTGAAAATTGT TCGGACAGTAGATCTTAAGAGTTCTCATCACATGAAGAATG-ATTTGTAACTCTGTGTAGTGATGGATGTTAACTAAACT TATTGTGGTAATCCTTTTGCAATATATACAAATATCAAAATATTATTTTACACACCTAACACCAATATGATGTTGCATAA CAATTATATCTAAATTTTTTAAAAGGGA----------------AAAATACAT-TTGGGGG---GTCAGAGATACCTTCT -TTTCATGTCTTGGCTCTGCC--TATGTGACTTTAAAC >Rousettus_aegyptiacus ATTACATGGCATGAC-GGGGAGAAAGTAGGTACAATAGAGACCAACAGGAGTTA---ACAAGTATACA-TTAAAA---GT TTTTATTGCAAGAAAAAA------AATGTAGCTACATTTGGTGATGAATGTTAAAAC-TAGCCTTATTGTGGTGATCCTT TCACAATATATGCAAATATTAAATTAT---GTTGTACATTTG-AAACTAAT-------------GTTATATATGTTAATT ATACCTCATTTTAGAAAATA-----------------------AAAGCTCATG-CTACAGAGAACAGACTATTAGTGGTT GCCAGAGGCAGGGTGAGAGTAAGTCGAGGC-------AATATGAGTGAAGGGGGTTAAAG--TACAAACTTCCAGCTATA AAATAA----GTCATGGGTGTGTAATATACAATGTGGC-AACTATGGTTAATAA------ATCGTATATTTGAAAATTGC TAAGAGAATGGATCTTAAAAGTTTTCTTCACATGAACAA---TTTTGTGACTAGAT---GTGATTGGTGTTAACTAAATT TATTGTGGTAATTCTTTTACAATATATACAAATATCAAATCATTTTATCATGTGCCTGAAACTAATATA---TTGCATGT CAACTATATCTACATTTTTTTGAAAGGGGA--------------AAAATATATGTTCGGAA---GTCAGACATACCTTTT --TTCATATCGTGACTCTGCC--TATGTGACTTTAAAC >Condylura_cristata AAAATGTAGATTTTTGGGGGAGGATGTGGGTATAGTGCAG-------GAATTAA---AAAAACTCATGTTTATGA----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------ATCTAA---------- --TTCATATCTTGGCTCTGCCTGTATGTGACTTTAAGC >Erinaceus_europaeus ATTATGTGGG-TGAT-GGGGAGACAATAG-TAGAACAGAGCCCAGTAGGAGTTA---AAACATCAATGTATGGCT----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------GTCAGAGATATATTTT -TTTCATATCTTGAATA------CATATAACTTTAAGT >Homo_sapiens ATCGTGAGGAGTTTT-TGGGAGGAGACAGGTAGAGTAGAGATCAGTAGCAATGA---AAAAATACATATTTCGGA----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------GTCAGATAAACTTTTT CCCCCACATCTTGGCTATACC--TATGTGAC--TAAGC Dog401_LINE >L1_CARN7_3END -------------------------------------------------------------------------------- TTTTTTT---------------ATT-----------TGAGTATAATTGACATACAATGTTATATTAGTTTCAGGTGTACA ACATAGTGATTCGACATTTGTATACATT-GTGAAGTGATCACCACAATAAGTCTAGTTACCATCTGTCACCATACAA--- ---------------------------------------------------------------------- >Canis_familiaris AAATA-TAACACATGTAAGGTAAAATGTT-AAGAGACATTCTTTTATTTTTG---TCC----GCATTCTT---TTTAAAA ATTTTTC---------------ACTTT------ATCAAGGTATAGTTGACATATAACATTACATTAGTTTCAGGTATATA GCATAATGCTTTGGTATTTGCATAAATA-GCAAAATGATCACCAGAGTAAG-----TTAACG------------------ TCCCGGCATTCTC---AAATGTGTTAT--GCAAAGA-TTCCCTATCATCTAGCGATATCCATTCAGTATT >Felis_catus GAACA-TAACGTGCGGAAGGTAACATTTT--ACAGACATTCTTTTATTTCTG---TCT----GCAATCTT---AATAATA AGCTTTTTAAATAATAAGAACCCTTCTTATCTTATCAAGGTATATTTGACATATAACATTATACTAATTTCAGATGTACA ACAGAATGA-TTGGTATTTGTACAAACT-GCAAAATGATCACAAGAA---GTCGAGCTAACA------------------ TCCTGGCATTCTC---AAATGTGTTAT--GCAAAAA-TTCCCTACCACCTAGCAATCTCCGCTCACCATT >Manis_pentadactyla GGACA-CAGTTTGTGGAAGATGAAATGTT------ACATTCTTTTCTTGTTG---TTT----GCATTCTC---TTAACTT TTTGATT---------------TTTTTTAAATAAAGGAGGTGTAATTGCCATATAACATTATG-----TTCAGGTGTACA ACATAATGATTTGATATTCATATATATT-GCAAAATGATCACCACAGTTAAGTCA---AACA------------------ TCCAGGCATCCTC---AAATATGTTAT--GTAAAAACTTTCCTATAATCTAGCAATCTCTACTTCATATT >Sus_scrofa GAACA-TAAATAGTGGGAGCTAAAATTTG-----CACAGTCTTTAGCTTTTG---TCTGATAGCATTCTC---------- TTTTTAT---------------TTTTTTAAAAAATTACGGTATAATGCACAGATAAC-----ATCAGTTTCAGGTGTGGG GCATAATGATCTGATATTTGTATATACT-GCCAAATGATCACTATAG---------TGAACA------------------ TCTGAGCACTCTC---AAATATTTTAT--GCAAGAG-TTCCCAACAATCTAGCAATTTCTACTTAATAAA >Bos_taurus GAACA-GAACTTACGAAAGGTAAAACTTT--ATAGACAATCTTTTACTTCTG---TCTGACAGCAGTCTC---TTTTTAT GCTTTTATTATGTGT-------ATTTTTAA---ACTGTGATACAATGAACATATAACAGTATGTTAGCTTCCAGTGTATG GCATAATGACTTGCTATTTGCATATATTCTCCAAGTGATCAGCACAGGAAGTGTAGCTGACA------------------ TCTGTGCATGCTC---AAATACACTGG--GCCAAAG-TCCCCAACACTCTAGCAACTTCCACTTAACATT >Equus_caballus GAACA-TAACTTGTGGAAGGTAAAATTTG----AGACATTCTTTTATTTTTG---TCT----GCATTCTC---TTTCCTT CTTTCTT---------------ATT-----------GAGGTGTAACTGACATATAAC---ATATTAGTTTCAGGGATACA ACATAATGATTCGCTATTTGTATATCTT-GTGAAATGATCACCATAGTAAGTCTAATCAATA------------------ TCTGGGTATTTTC---AAATACGTTAC--GCAAAAG-TTCCCTAAAATCTAACAATCTCCACTTAATATT >Ceratotherium_simum GAACA-AAACCTGTGAAAGGTAAAATTTT----ACAGATTCTTTTATTTTTG---TCT----GCATTCTC---TATATTT CTTTTTT---------------GTT-----------GCGGTGTAATTGACATATAACATTATACTAGTTTCAGGTATACA ACATAATGATTTGATATTTGTATATGCT-GCGAAATGATCACCACAGTAAGTCTAGTTAATA------------------ GCTGGGCCTTCTC---AAATATGTTAT--GCAAAAG-TTCCCTACAATCTAGCAATCTCCACTTAATATT >Myotis_myotis AAACA--AACATATGGAAGATAAAATTTT------ACAATCTTTTATTTTTG---TCTGACAGCATTCCT---TTTTCAT GTTTTAT---------------CTTTTCAA------GAGGTGTAATTGACATATAACATCATATTAGTTTCCAGTGTAAA ATATAACAATACAGTATTTGTACATATT-GCAAAATAATTACCACAATTAACCCAGTAAACA------------------ TCTGGACATTCTC---AAATATGTTAT--GCAAAAG-TTCCCTACAATCTATTAATATCCATTCAATA-G >Rousettus_aegyptiacus AAACA-TAATTTATGGAAAGTAAAGTTT---------AATCTTTTATTTTTT---------------------------- ---------------------------------ATTGAGATATAACTGAC--ACAATATTATATTAATTTCTGGCATACA ACACAATGATACAGTATTTGTATATACT-GCAAAATGATTACCACAA-TAAGTC-----ACA------------------ TCCAGGCAGTCTC---AAATATGTTAT--ACAGAAG-TTCCCTACAATCCAGTAATATCTACTTAACA-T >Condylura_cristata GAACA-TAAC--------------------------------TTTATTGTTG---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ACT--GCATTCTC---AA-------AT--GCCAAAG-TTCCCTATAATCTAGAAATA-----TTAACGTT >Uropsilus_gracilis AAACA-TAACTTGTAGAAGGCAAAACTTT------ACATTCTTTTATTTTTG---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- TCT--GCATTCTC---AAATATGTTATATGTCAAAG-TTCCCTATAATCGAGAAGTA-----TTAATGCT >Homo_sapiens1 GAACGTTAAGTTGCGGAGGATAACATTTGACACAGACATTCTTTC-TTTGTG---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- TCT--ACATTCTC---GAGTACAGTAT--GGACAAG-CTCCCTACGGTCAAGCAATATCCACTTCATATT >Homo_sapiens2 GAACGTTAAGTTGCGGAGGATAACATTTGACACAGACATTCTTTC-TTTGTG---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- TCT--ACATTCTC---GAGTACAGTAT--GGACAAG-CTCCCTACGGTCAAGCAATATCCACTTCATATT >Homo_sapiens3 GAACA-TAATTTGTAGAAGATAAAATTTGACACAGACATTCTTTTATTTGTA---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- TCT--GCATTCTC---AAGTACATTAT--GGACAAG-TTCCCTACAATCAAGCAATATCCACTTCATATT >Homo_sapiens4 GAACGTTAAGTTGCGGAGGATAACATTTGACACAGACATTCTTTC-TTTGTG---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- TCT--ACATTCTC---GAGTACAGTAT--GGACAAG-CTCCCTACGGTCAAGCAATATCCACTTCATATT Dog403_LINE >L1_CARN7_3END -------------------------------------------------------------------------------- ----------------------------------TTTTTTTATTTGAGTATAATTGACATACAATGTTATATTAGTTTCA GGTGTACAACATAGTGATTCGACATTTGTATACATTGTGAAGTGATCACCACAATAAGTCTAGTTACCATCTGTCACCAT ACAANG-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------- >Canis_familiaris TTATCCTTT-AAATTGTCTGCATGTTAATCAACAAAGTCATAGAACAAACACTTTTAGT-TGTTAA---TTACTACA--- -----------------GATTGATTGATT---GA-----GTATTGAGGTATAATTGAAACA---CATTATATTAGTTTCA GGTGTACAACATAATGATTTCATATTTGTACATATGGTGAAATGATTACCATAGTAAGTCTACTTAATATCCATCAGT-- ---------CCACTCCAGTTTTGTTATTTCTT---GATGCTTGTAAGACTACTTTCAAAATTTGCAACAAA--------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------TGAAAAGA-GTGTGT >Felis_catus TTATA----------------ATGTTGATCAGCAGAATCACAGTG----------------GTTAA---TCACTCCAGAT TGACTGATTGATTTTTTTATTTATGTATT---TA-TTTATTAGCAAGGTATAATTGACACATAAC---ATATTAGTTTCA GGTTTACAACATAACGATTTGATATTTGTACATATGGTGAAACATTCACCATAATAAGTCTAATTAACATCTGTCACT-- ---------CCACTCCAGTTTTCTTATCTCGT---GATGTTTGTAAGACTACTTTTAAAATTTGGAACAAG--------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------TAAAAAAAGAATTAT >Manis_pentadactyla TTACCACTA-AAGTTGTCTGCATATTGATCAGCAGAATCACAGTACAGATACTT------TGTTAA---TCACTCCA--- -------------GTCTTATTTATTTAAT---TT------CATTGAGTCATAATTGATATATTACAT----TTAGTTCCA AGTG--------AATGATTTGCTATTTGTATATTTTGTGAAATGATCACCAC----AGTCTAGTTAACATCTTTCACT-- ---------CCCCTCAAGTTTTATTATTACTT---GATGCTTGCAAGATTCCTTTAAAAATTTGAAACAAG--------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------TGAAAGTA-ATTTGT >Sus_scrofa GTGCCATTC-ATATTATCCACATATTGATAAAGAGGATTACAGAAGTGACATTTCCCGTCTGTTAT---TTACTCAT--- -----------TTATTTTATTTATCTATT---TT--TTGAAATTGAGGTATAATTGACACATAATATTATACTAGTTTCA GGCACACAACATAATGTTTCAATATCTGTATATACTACAGAATGATCACAAACATAAGTCTAGTTAACATCCATAACT-- ---------TCACCCCAGT-TTATTATTCCCT---GATGCTTGTAAGATTACTTTTAAATTTTGGAACAAG--------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------TGAAAATA-ATTTAC >Bos_taurus TTGTCATTC-ATATTGCCTGCACACTGGTCAGTAGGATCACAGAACACACAGCTCTAGTCTGTTAA---CCACACAA--- ---------ATGTATTTTGTTTATTTATA---TA-TTTTAAATTGAAGTACAATTGATATATAACAGTATATTAATTTCA GGTATACAACATACTGATTCAATATTAGTATACATTACAAAGTGATCAAAGCTATAAGTTTGGTTAACTTTTATCACT-- ---------CCACTCCAGTTTTATTATTACTT---AATACTTGTAAGATTACTTTTAAATTTGGGGACAAT--------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------TGAAAAGA-ATTTAC >Equus_caballus TTATCATTC-AAATTGTCTGCATAGTGATCAGCAG-------------ACACTTCTAGTCTGTTAA---TCACACGA--- -------------ATATTATTTATTTATT---TATTTTTATATTCAGATATAATTGACATATAGTATTATATTTGTTTCA GTTGTATAACACAATGATTCGATATTTGTATATATTGTGAAATGATGACCACAATAAGTCTAGTTAACATCCATCAATAA TA-------AAACTTCAGTTTTATTATTACCT---GATGTTTGTCAGATTACCTTTAAAATTTGGGACAAG--------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------TAAAAGTA-ATTTAT >Ceratotherium_simum TTACCATTC-AAATTGTCTACATATTGATCAGCAA-------------ACACTTCTAGTCTGTTAA---TCACTC----- -------------GTTTTATTTATTTATT---TA---TTATGTTGAGGTATAATTGACATATAACATTATATTAATTTCA GTTGTACAACATAGTGATTTGATATTTGTATGTATTGTGAAACGATCCCCACAATAAGTTTGGTTAACATCCGTCACT-- ---------TCACTTCAGTATTATTATTACTT---TATGCTTGTAAGATTACTTTTAAAATTTGGAACAAG--------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------TAAAAAGG-ATTTAT >Myotis_myotis TTATCATTC-AAATTGTCTTCATATTGATCAGCAGAATTCCAGGCCAGACACTTCTAGTCTGTTAA---GCACTCAA--- -------------GTTTTATTTATTTATT---TTGTTTTAAATTGAGGCATATTTGACATATAACATTTTATTAGTTTAA GGTGTACAACCCAATGATTTGATATTTGTATATATTGCAAAATGATCACCACAGTAAATCTACTTAACTTTTATCACT-- ---------CCATTGCAGTTTTATCACTATTT---GACACTTGTCAGTTTATTTTAAACATTTGGAAAAAG--------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------TAAAAATA-ACTTAT >Rousettus_aegyptiacus TTATCATTC-AGATTGTCTGCATATTGATCAGCAGAATCACAGAGC--ACACTTCTAGTCTGTTAA---TTGCTCCA--- -------------GAATTTATTATTTATT---TA----TAAATTGAGGTATAATTG--ATATTACATATTGTTAGTTTTG AGTGTACAACATAAGGATTCAATATTTGTATATATTGCAAAATGATCACCAC---AAGTCTAGTTAACATTCATCACT-- ---------CCATTCCAGTTTTATCATTACTT---AATGCTTATAAGTTTACTGTTAAAATTTGAAACGGG--------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------TGAAAAAA-ATTTAT >Condylura_cristata TTACTATCCTAACTTGTCGGCACAACAATCAGCAGAATCACAGAACAGACTCATCTACTCTGTTTA---TTCCCATT--- --------------TTTGAATTATTATTT--------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------GATGCTTATAAGATTAATAATATCATATGGAACAAG--------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------TGAACATA-GTTTAC >Sorex_araneus TTATCATTG-AAATTGTCTCCACATTGGCCAGGTGAATCACAGGACAGATACTTCAAACTTTTTAA---TGACT--A--- -------------GATTCA-TCGTTACTT--------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------CATGCTTCTAAAAATATATTTTAAATTTGGGACAAATTGGTCAGG GCGATAGTACAGTGGATAAGGTACTTGCCTTGCACATGGCTGACCTGAATCTGATACCCAGTACTCAGATGGTCCCCAGA GCTGACCAGGAGTGATATCTGAGCACAGAACCAGGACTAAGTCCTGAGCACTCCCAGGGTGGCTCTCAGAAAATGAAAAA AATATTTTAATAAAATTAAATTTAAAATTAAACTTTTAATTAAAATTAAAAATTAAAATAAAAACAAAAATTTTAAATAA AATTAAAAAAATTAATTTGGTAAAAGTAAAGTTAATTCAT >Homo_sapiens TTACCATT--AAATTTCATACATGTTGACAAGTTAAATCACAGGACAGATATTTTTACACTGCTAA---TCACTTCA--- -------------GCTTTA-TTGTTCCTT--------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------GATGCTTATAAGTTTACTTTTAAAATTTAGAACAAG--------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------ACTTAT Dog405_LINE >L1_CARN7_3END -------------------------------------------------------------------------------- -------------------TT---TTTTTA-------------TTTGAGTATAATTGACATACAATGTTATATTAGTTTC AGGTGTACAACATAGTGATTCGACATTTGTATACATTGTGAAGTGATCACCACAATAAGTC-------TAGTTACCATCT GTCACCATACAA-------------------------------------------------------------------- -------------------------------------------------------------------------------- --------- >Canis_familiaris TAATGTCAGTAACATGGT-ATGCCCTCCAACAACAACAAC---AAAATCCATTAAAA---TTTTGCTTTCTTT------- TAATGGTAACTAAACTTTATT---TTTATAACTTTTTA----ATTAAAGTATAAATGACATATAACATCATATAGGTTAT AGGTGTACAACATAATGATTCAATAT--------ATTGTGAAATGTTCATCACAGTCTGTC-------TAGATAATATCT ATTC-----------------------------------------------TTTTGCTGTTTTT---AAAATGTA----- --------------------------------------------TGGATTGTTTGAATTATTCAGTAT--ATCTTT-GTT TTTCCTTTC >Felis_catus TAATGTTACTAATGTAAT-ATACCCTCCAACAACAACAACAACAAAATTCTTTAAAA---ATTTGCTTTTTCT------- -TATGGTAACTAAGCTTTATT---TTTACAACTTTATT----ATTAAAGCATAATTGACATATAACATTACATTAGTTAC AGGTGCATAACATAATGATTCAATAT--------ATTGTAAAATGATCACCACAGTATATC-------TAGTTAATATCT GTTC-----------------------------------------------TTTTGCTGTTTTT---AAA-TGAG----- --------------------------------------------TGGATTGTTTGAACTATTCAATAT--ATCTTT-GTT TTTCCTTTC >Manis_pentadactyla TTATGTCAGTAACA--AT-GTACCATCCAACAATAACAACAAAAAAATCCATTAAAA---TTTTGCTTTTTTA------A AAATGGTAACTTAATT--------TTTTTAATTCTTTTTTTTATTGAGGTGTAAT---------ATATAACATTGGTTTC AGGTGTACAAACTAATGATTCAGTATTTGTATACATTGTGAAATGATAGTCACGGTAAGTCTAGTTAATAGTTAACATCT GTTA-----------------------------------------------TTTTGCTGTTTTT---AAAATGTA----- --------------------------------------------TAGATTGTCTTAACTATTCAGTGTACATCTTTTGTT TTTCCTTCC >Sus_scrofa TAATGTCAGTAATA--AT-GTACTCTACAACAACAAC-----AAAAATCCATTAGCA---TTTAAAAATTTTT------T TAATGGTAACTTAA----------TTTTTAAATCTTTT-----TTGAGGTATAATTGCCATATAACATTACATCAGTTTC AAGTATACAACATAATGATTTGATATTTGAATGTATTGTGAAATGCTTACCACAATAAATC-------TAGTTAACATCC ATTTCACTGT-----------------------------------------TTTTGCTGTTTTT---AAAATGTGTAGGC TACTGGTGATGTCTTAAATTTCTTTTAAAAAAAATTAAAATGTTTGGATTGTCTGAACTCTTCAATGT--ATCTTTTGTT TTTCTTTCC >Tursiops_truncatus TAATGTCAGTGGCATAAT-GTACCCTCCAATAGCAAC-----AAAAAGCCATTAAAA---TTTTGCTTGTTTT---TTTA AAATGGTAACTGAATTGTGTTTTATTTTTAACTCTTTT-----TTGAGGTGTAATTGCCATATAACAGTACCTCAGTCTC AAGTGTACAACATAATGATTTGATATTTGTATACATTGTGAAATGCTCACCACAGTAAGTC-------TAGTTAACATCT GTTA-----------------------------------------------TTTTGCTGTTTTT---AAAATGTG----- -----ATGATGTTTTAAGTTTCTTTA--AAAAAGTTAAAATGTATGGATTGTCTGAACTCTTCAATAT--ATCTTCTGTT TTTCTTTCC >Equus_caballus TAATGCCAGTAACATAAT-GTACCCTCCAACAACAACAAC--AAAAATCTATTAAAA---TTTTGCTGTTTTT------T TAATAGTAACTTAACTTTATT---TTTTTAACTTTTTT-TTTACTGAGATATAGTTGACATATAACATTATATTTG---- --ATGTACAATATAATGATCCAATATTTGTATACACTGCGAGACGATCCCCACAATAAGTC-------TAGTTAATATCT GTTA-----------------------------------------------TTTTACTGTTTTA---AAAATGTA----- --------------------------------------------TGGATTGTCTGAACTATTCAATAT--ATCTTTCATT TTTCCTTCT >Ceratotherium_simum TAATGCCAGAAACATAAT-GTACTCTCTAAGAACAATAAC--AACAATCCATTAAAA---TTTTGCTGGTTTT---TTTA TATTAACAATTTTATTTATTTATTTTCTTAACTTTTTTTTTTGCTGAGGTATAATTGACATATAGCATTATATTTGTTT- -GGTGTACAACGTAATGATTCAATATTTGTAAACATTGCAAAATGATCACCATAATAAGTC-------TAGTTAACATCT -TTA-----------------------------------------------TTTTGCTGTTTTT---AAAATGTA----- --------------------------------------------TGGATTGTCTGAACTATTCAATAT--ATCTTTTGTT TTTCCTTCC >Myotis_myotis TCATG---------------TACCCTCCAACAACA--------AAAATCCACTAAAA---TTATGCTGCTTGT---TTTT TTATGGTAACTTAATTTTATTCATTTTTTAAACTTAAT----TTTGATATTTAATTTACATATAACATTATATTAGTTTC AGGTGTACAAC---ATGTTTCAATATTTGAAT-CACTGTGAAACATTCCCCACATTAAGTT-------TAATTAACATTC GTTGTTTTTTGTTTGTTTGTTTGTTTGTTTGGGGTTGTTTGGGGGTTT---TTTTGCTGTTTTT---AAAATGTA----- --------------------------------------------TGGAATATCTGAACTGTTCAATAT--ATCTTTTGTT TTTCCTTCC >Rousettus_aegyptiacus TAATGTCAGTAGCATAAA-GGACTCTCCAGCAACAAC-----AAAAATCCATTA--A---TTGTGCTGTTTTT---TTTT TAATGGTAACTTAATTTTATTTACTTTTAAAACTTTTT-----TTGAGGTTTAATTGACATATGATATTACATTAGTTTC GGGTTTATAACGTAATGATTCGATATTTCCATACATTGTGAAATGACTACC---TTAAGTC-------TAGTGAACATC- -TTA-----------------------------------------------TTTTGCCATTTTT---AAAATGTA----- --------------------------------------------TGGAATCTCTGAATTATTC--TGT--ATCTTTTGTT TTTTCTTTC >Condylura_cristata TAATGTTAGCTATATAAT-ATATCCTCCAACAACAAA-----AAAAATTCATTAAAG----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------TTTTACTCTTTTT---AAAGTATA----- --------------------------------------------TAAGTTGTCTG-ACTATTCAAGGT--ATCTTTTG-- TTTCTTTCT >Sorex_araneus TAAT----GTAACATAATGATTTCTTTGAACAGCAAAAGGGAAAAAAATAAGTAAAA----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------GTTTGCC-ATTTT---AAAATGTG----- --------------------------------------------CACATTGTCTG-GCTGTTCAAAAT--ATCTTTTGTT TCTTCTTTT >Homo_sapiens TAATGTCGATAACA------TGTACCCAAACAACAAA------------AATTAAAA----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------ATGTGCTCTTTTT---AAAATGTG----- --------------------------------------------TGAATTATATGAACTGTTCAATAT--ATCTTTTGTT TTTCCTTCC Dog408_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------TTTTTCCAGCTTTATTGAGGTATAATTGACAAA TAAAAATTGTA-TATATTTAAGGTGTACAACGTGATGTTTTGATATACGTATACATTGTGAAATGATTACCACAATCAAG ----------------------------------------------------------------------- >Canis_familiaris TTTTTCTTCTCTTCCTCAACCAGGGTCAAGACTCACCTAAAACCATGATC-------TTTTATTGCCTC----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------CAGC-------------CTTACTGAGGTATATTTAAC--- --AAAACCTTAAGATATTTAAGGTATATAGCATGGTGATCTGATATATGTACACACTGTCAAA-GGTCA----------- ---ATCTCATTATCAGT---AGTTCTGGGTCCGTTTGGACTCAAGTCCCCACCTGGATCC-TCTGACCTAG >Felis_catus CTTTTCTTCTCTTCCTCTACCAGGGTCAAGATTCACCTAAAACCATAATC---------TTTTTCCCCC----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------CAGC-------------TTTGTTGAGGTATAACTGAC--- --AAAATTTTAAGGTATTTAAAGTGTGTAGCACGGTGATTTGATATACATACACATTGTGAAA-GGTCA----------- ---ATCTCATTATTAGC---AGTTCTGGGTCCATCTGGACGGAAGTCTCCTCCTGGACCC-TCTGGCTTAG >Sus_scrofa CTTTTTT-CTTTTTTTCAATCAGGGTCAAGACTCA-TTAAGCCTCTTTTA---TATATATATATATATATATATATATAT ATATT--------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------TAGT-------------TTTATTGAGGTATAACTGAC--- --AACACTGTAGGATAGTTAATGTATACATCATGGTGATTTGATATACGGATACACTGTGAAA-GGTTA----------- ---ATCTTACTGTCAGC---AGGTTCGGATCTGTCTGGGTGGAAGTCCTCTTCTGGACCC-TCTGGCTTAA >Tursiops_truncatus CTTTTCTTCTTTTATTCAACCAGGGTCAAGACTCAATTAAACCCCTAGTC-------TTTGGGGGTTTTTTCTTTCTTGC CCTACTGGTTCTCACACCCCAGCAGGACCGGCTTTCCCTTACCACTCGTGGCTTTCAGTTTGCCACTTAACCCTGTCACC AATTCAAGAATCAAACTGATGCTTCTGTTTTTGCTGTAGTGCATTTGCTATATAATCTGCCAGCTATATTTTTGCTTTAA ATCACTTTGGTGTTAGGTGTGTTCTCATACTCAGCACAGAGTGAATTTTGCAGAGTCCATATTTCTGACTGGTACATATA CTCTGCCCGGCATGTGACTGGAGTTCCATAAAATATGTTTCTTTTTTCTTTTCTTCTTTTATTCAACCAGGGTCAAGACT CAATTAAACCCCTAGTCTTTGGGGGTTTTTTTCTTTTTTTCTGT-------------TTTAATGAGGTATAACGGAC--- --AAAATTGTAAGATATTTAAAGTTCACATCATGGTGATTTGATACACAGGCACATTGTGAAA-GGTT------------ ---AATTTACTGTCAGC---AGTTTTGTATCTGTTTGGACCAAAATCCCCTCCTGGACCC-TCTGGCTTAG >Equus_caballus CTTTTCGTCTCTTCTTCAACCAAGGTCAAGACTCACCTAAGCCCCTAGCC---TTTTTTTTTTTCTTTT----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------CAGC-------------TTTATTGAGGTATAACTGAC--- --AAAACTGTAAGATATTCAAAGCGTCCATCATGGTGATTTGATATATGTATACAATGTGAAA-GGTTC----------- ---ACCTTACTAACAGC---AGTTT-GGATCTG-CTGGACTGACGTCCCCTCCCGGGCCC-TCTGGCATTG >Ceratotherium_simum CTTTTCGTCTGTTCCTCAATCAGGGTCAAGACTCACCTAAGCCTCTAACC-----TTTTTTTTTCTTTT----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------CAGC-------------TTTATTGAGATATAATTAAT--- --AAAATTGTAAGATATTTAAAGTGTACATTGTGGTGATTTGATACATGTATACACAGTGAAA-AGTTA----------- ---ATCTTATTATCAGC---AGTTT-GGATCTGTCTGGACTGAAGTCCCTTCTCGGACCC-TCTGGCTTAG >Myotis_myotis TTTTTCTTCTCTTCCTCAACAGGGGTCAAGACTCACCTAAGTCCCTAATA-----TGTACGTGTGTTTC----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------CAGT-------------TTCACT-AGGAATAATAGAC--- --AAAATCATAATATATTTAAAGTATACA-CATGGTGATTTGATATACATATACATTGGAAAA-GGTTA----------- ---ATTTTATTATCAGA---AGTTTTGGAACTGTCTGGACTCAAGACCCCTCCTGGACCC-TCTGGCTTAG >Rousettus_aegyptiacus CTTTTCATCTCTTCCTCAGCTAGGATCAAGACCCACCTAAGGCCCTAATA---------TATTTTTTTT----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------AAGT-------------TTTATT-AGGTATA-TTGAC--- --AAAACTGTAAGATACTTAAAGTGTACACTGTAGTGATTTGATGTATGTATACATCAGGAAA-GGTTA----------- ---ATATTATTATCAGC---AGTTTGGGATCTGTGTGGACTGAGGTCCCCTCCTGGATGT-TCTGGCTTAG >Condylura_cristata TTG------TCTCCCTCAGCCAGAGTAAAGTCTCCACTAAG-CCCTAAC-----------ACTTATTAG----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------CAGC------------------------------------ -------------------------------------------------------------------------------- --------------------AGTTT-GCATCGGTGTGGA-TAAAGTCCCTTCCTGAACCCTTCTGGCTTAG >Uropsilus_gracilis CGG------TTTCCTTCCACCAGGATAAGGATTCAACTAAG-CCCCTAA-----------ATTTATGAG----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------CAGC------------------------------------ -------------------------------------------------------------------------------- --------------------AGTTT-GGATTAGTTTGGACTGAGGTTCCCTCCTGGAACTTTGTGGCTTAG >Homo_sapiens ATTTTCTTCTCTTCTTCTACCATGGGCAAGCCTCACCTAGGCCCCCAATC---------TTCTTGTTAG----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------AAGC------------------------------------ -------------------------------------------------------------------------------- --------------------AGTTTGGGACCTGTCTGGACCTGAAGTCCCTTCGGAACCA-TCTGGCTTAG Dog409_LINE >L1MA9_3END -------------------------------------------------------------------------------- -----TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGA -TATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTACCA----TTT TTTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTT-AGC-AAATTTCAAGTATACAATACAGTATTATTAACTATAG TCACCATGCTGTACATTAGATCTCCAGAACTTATTCATC----------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------- >Canis_familiaris TTTATA--TTTTCATTTTAAAGTAGGCAGTAAC-ATGTAGATTAAAAGT----GTGAC---AAAGTT-GTTTTTTTTTTT TA-----------------CTGAGGTGTAACTGAC---------------TAGTTTCAAGTGTACAACATAATGATTGAA -TATCTATAAATATTGTGAAATGATCAC------AAGTCTATTTAAC--ATCCAACACCATACATAGTTA-GAAATTTTT TTTCTTTT------AAGACTTTTAAGATAAA--CTTTT-AGC-AACTTTCAAATATGCAGTA--GTGTTAGTAACAATAG CCACCATACTGTATGTTACAACCCC------------------TAGTTCTGTTTTTTCAA---CCAA----------CTT ---TGAGGTATAATTTACAGGCAATAAAATTCTCCTGTTTTAAGTGTTCATTGAATTTTACCAACTTTGAGGTATAATTT ACAGGCATAAAATTCTCCTGTTTTAAGTGTTCATTGAATTTTG >Felis_catus TTTATATTTTTTTATTTTAAAGTAGGCAATAAC-AGGTAGACTAAAAGTGACTAAGAC---AAAGCT-CTATTTTTTT-- -A-----------------TTGAGACAT--------------------ATTAGTTTCAG-------------TGATTTAG -TATCTGTGTACATTGTGAAATGATCACAA----AAGTCTAGTTAAC--ATCCATCATCATACATAGTTA--GAAATCTT TTTTTCTTGCAATGAGGCTTTTTAAGATGTA--CTCTTAAGC-AACTTTAAAATACGCTATACAGGGTTAATAACTATAG TCTCCATACCGCATGTTACATCCC-------------------AAGTTCTGTTTTTTAAA---TCAA----------CTT ---TGAGGTATAATTTACAGGCAGTAAAATT------------------------------------------------- -----------------CTGTTTTAAGTGTTCATTGAGTTTTG >Manis_pentadactyla TTTATA------TCTTCTAAAGCAGGC---------------TTAAAAT--GTGTAAC---AAAGTC-CTATTTTTTT-- -A-----------------TTGAGGTATAATTGACATAT-ATCATTCTATTAGTTTCAAGTATACAACATAATGATTCAA -GATTTGTATATATTGTGAAATGATCACCACACTATGTCTAGTTAAT--GTCCGTCACTATAC----------AAATTTT TTTTTCTTATGATGAGGACTTTTAAGATCTA-----TT-AGCAAACTTTCAAATATGCAATACAGTATCATTATCTATAG TCACCATGCTGTACATTATATCCCC-----------------AAAGTTGTATTTTTTAAA---TCAA----------CTT ---TGAGATACAATTTAAATGTAATAAAATT------------------------------------------------- --------------CTCCCATTTTAAG-GTTCACTCAGTTTTG >Sus_scrofa TTTATA--TTTTTGTTTTAAAGCAGGCAATAGC-ATGAAAACTAAAAATTAGTGTGAC-------------TTTTTTTT- AA-----------------TTGAGGTACAATAGATA---------TATATTAGTTTCAAGTGTACAACATAATGATTTGA -TATTTGTGTATTTTATGAAATGATTTCA-----ATGTCTAGTTAAT--AT--GTCACAATACATAGCTACAAAATTTTT TTTGTTTC--GATAAGAACTTT-AAGATTTA--CTCTT-ACC-AACTTTCAAA-ATGCAATATGGTATTATTAATTCTAG TCACCATGGTAGACGTTACATTCCC-----------------AGAGTTCTAGTTTTTAAA---TCAA----------CTT TATTAAAGTATAATTTACATGCAATTGAATT------------------------------------------------- --------------CTCCAGTTTTAAATGTTCACTCAGTTTCA >Bos_taurus TTCTTATATTTTTGTTTTAAAGCAAGCAGTAAC-ATGCAAACTAAAAGTCAATGTGAC---AAAGCT----TTTTT---- -------------------------TAAAA------------------ATTTTTTCTTGAAGTACAACACAACGATTTGA -TGTTTGTATATATTGTGAAATGATTA----AATAAGTCTAGTTCAC--ATCTGTCACAATACATAGTTA--AAAAATTT TTTTCCTTGTGATGAGAACTTTTAAGACCTAGTTTCCT-AAC-AACTTTCAGA-ATGCAGTACAGTACTATTAATTCTGG TTACCATGGTAGATATTACATTCCA-----------------AAAGTTCTGTATTTAAAA---TCAA----------TTT TATTGAGGTATAATTTACATGCAGTAAAATT------------------------------------------------- --------------CTCCTGTTTTAAAT---------GTTTTA >Equus_caballus TTTGTA--TTTTTGTTTGAAAGCAGACAATAAC-ATG---ACTAAAAATAAGTATGAC---AAAATT-CTATTTTTTTC- AA-----------------TTGAGGTATAATTGACA---------TATATTAGTTTTAAGTGTATAGCATATTGATCTGA -TATTTGTATATATTGTCCAGTGATCACCACAATAAGTCTAATTCAC--ATCTGTCACCATAC--AGTTA-GAAATTTTT TTTTTCTTGTGATGAGGCGTTTAAAGATCTATTCTCTT-AGC-AACTTCCAAATATGCAACACAATATTATTAACTATAG TCACCATGCTATACATTACATCCCT-----------------AAAGTTCTATTTTTTAAA---TCAG----------CTT TATTGAGGTATAATTTATATGCACTAAAATC------------------------------------------------- --------------CTCTCATTTTAAGTGTTCATTGAGTTTTG >Ceratotherium_simum TTTGTA--TTTTTGTTTGAAAGCAGGCAATAAC-ATG---ACTAAAAATAAGTGTGAC---AAAGTT-CTATTTTTTT-- AA-----------------TTGAGGTATAATTGACATAT-AACATTATATTAGTTTCAAGTGTACGGCATAATGATTTGA TTATTTGTATATATTGTGAAATGATCACCACAATGAGTCTAGTTAAC--ATCTATCACCATACATAGTTACAAAAATTTT TTTTTCTTGTGATGAGGACTTTACAGATCTGTTCTCTT-AGC-AACTTTCAAATATGCAATACAGTATTATTAACTATAA TCACCATGCTGTACATTACATCCCC-----------------AAAGTTCTATTTTTTAAA---TCAA----------CTT TATTGAGGTATAATTTATATGCAATAAAATC------------------------------------------------- -----------------TCATTTTAATTGTTCATT--GTTTTG >Myotis_myotis TTTATA--CTTTTGTTTTAGAGCAGGTAATAAA-ATGTAGACTAAAAATGGGTATAGC---AAAATT-GTATTTTTT--- AA-----------------TTGAGGTATAGTTGACA--------TAACATTAGTTTCACGTACACAACGTAATGATTTGA -TAATTGTATATATTGTAAAATAATCACCACAGTAAGTGTAGTTAAC--ATCTGTCACCAT----AATTAC--AATTTTT GTGTGTGTGTGACTAGGGTTTT-AAGGTCTACTCTCTT-AGC-AATTTTCAAATATGCAATACAGTGCTATTAACTATAG TCACCATGCTGTACATTACATCCTC-----------------AGAGTTCTATTTTTTAAA---TAAA----------CTT TATTGAGGTATAATTTACATGTAATAAAATT------------------------------------------------- --------------CTCCCGTTTTAAGTCTAAGTTGAATTTTG >Rousettus_aegyptiacus TTTATA--CTATTGTTTCAAAGCAGCCAATAAC---GTGGACTAAAAATGAATGTTAC---GAAGTT-TTATTTTCTT-- -A-----------------TTAAGGTATAATTGACA-----------AATTAGTTTCAAGTATACAACATAATGATTCAA -TATTTGTATATATTGTGAAATAATCTCCAAAATAAGTCTAAT------ATCCTTCACCATCTATAATTACAAAAATATT TT----TTGTGATGAGAGATTTTAAGATCTACTCTCTT-AGC-AACTTTCAAATATGCAATATAGCACTATTCAT--CAG TCACCATGCTATACATTACATCCCC-----------------AAAGGTCTGGTTTTTAAA---TCAG----------CTT TACTGAGGTGTAATTTACATGTAAT-AAATT------------------------------------------------- --------------CTCTCATTTTAAGTATTCATTGAGTTTTG >Condylura_cristata TTTATA--TTTCTGTTTTAATGTTGGCAATAATAATGCAGGCTAAAAGTGAGTGTGGC---AAACTTCCTATTTTTT-AA AA------------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------CCAGAATGTGTTTTTCA TAGTGAGGCATTTTTTACATGCAGTG------------------------------------------------------ ------------------------------TCCCTGAGTTTTG >Solenodon_paradoxus TTTTTA--TTTTTGTTTTAAAACAGGCAATAGC-ATGCCGACTAAAAATGAATGTGAC---AGAGTT-CTATTTTTT--A AA------------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------TCAA----------CTT TATTCAGGCACAATTTACATATAT--AAATT------------------------------------------------- --------------CTCCCATGTTTAATTTTCAGTGAATATTG >Cavia_porcellus TTTATGTATCTTTGTTTTAAAGCAGATGACACT--TGTACTTTATGGAT----GTGCT---GACGTT-CTACTTTT--AA AA------------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------TCAA------------- ---TTCAGTAGAATTTGGCTGT---------------------------------------------------------- --------------------TTTTAAGTGTTCACTGAATTTTG Dog410_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGA TGTTTTGA-----------TATACGTATACATTGTGAAATGATTACCACAAT---CAAGCTAATTAACATATCCATCACC TCACATAGTTACCATT----------------------------TTTTTGTGTGTGGTGAGAACACTTAAGATCTACTCT CTTAGCAAATTTCAAGTATACAATACAGTATTATTAACTATAGT----CACCATGCTGTACATTAGATCTCC-AGAAC-T TATTCATCCTGCATAACTGAAACTTTGTACCCTTTGACCAACATCTCCCCATTTCCCC---------------------- ------------------------------------------------------- >Canis_familiaris AAAACTACCTTTTCCAT--CTCTCCTCCT--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------GTGTTTTCCT-GAGTCT-ATGGTA---TTGAAAGAGCCA--- --TTTCC---------CCCCAGTTTTATTGAGATACCCTCGGCAGAC-GGCACTGTGTAGATTTAAGGTGTACAGCATAG TGATTTGA-----------CCTAC--AT---TTGTGAAACGATTGTCACAGG---AAGTTTAGTTAAC--ATCTGTCATT TCATGCAGACCCGAAT----AAAGAAAGAAAAAGAAAAAAAAAATCTTTCCTTGCAATGAGAACTCTAAGGATCTGCTCT CTTAACAACTTTCAAACACGCCATAGAGCAGTGTTAGCTAGGGC----TATCCTACTGTACATTACATCTCT--ATAT-T TATTTATATT--GTAACCAGAAGTTTGTACCTGTTGGCCACTTT-----------------TCCCAGAGCCATCTCT--- GAAGTGGAGTGACATCACT------ATATCCAGTGAAACAAAGTGGGAGGGAATG >Felis_catus AAACCTACTTTTTCCTT--CTCTACCTCT--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------GTGTTTCCTG--AGTCTTACGACA---TTCTAATAGCCA--- --TTTCT--------CCCCAGGTTTTATTGAGATGTCGTTGGCATTC-AGCAGTGTGTAAGTTTAAGGTGTATAGCATGA TGATGTGA-----------CCTAG--AT---TTGTGAAATGATTACCACAATAAAAAGTCGAGTTACC--ATCAGTCATT TCATGTAGATACAAAA-----------------------------------AAGAAATGAGAGCTCTTAGGATTTTCTCC CTTAACAACTTTCCGACGTACCATATAGTAGTGTTAACTACAGC----TATCATGTTGTACATGACATCTCT-AGTAT-T TATTTATATT--ATAATTGGAAGTTTGTACCTGTTGACCACTTT-----------------TATGATAGCCATTTCT--- GAAGTAAAATGACATCATT------GTATCTAACGCAACCGAGCGGCAGAGAATT >Manis_pentadactyla AAACCTACTTCTTCTAT--CTCTCCCTCT--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------GTCTCTCCTAGTAGTCTCATGGTT----TGGGATAGCCA--- --TTGTT---TATTTCCCCCAGTTTTAGCAAGATATAATTGACATGC-AGCAC--CATATGTTTAAGGTGTGAAGCATAA TGATT-GT-----------CTTAC--AGGCATTGTGAAATCATTCCCACAAA---AAGTATAGTTAAC--ATCCATCATC TCATATACATACAAAATAAAAGACAAAGAAAAGGAAAAAACAAGTTTTTCCTTGCAATAAGAACTCTTAGGATCTACTCT CTTAA---CTTTCAAATACACCAGACAGCAGTGTCAGC---AGT----CTTCCTGTTGTATGTTACATCCCC--AGAA-T TATTTATTTT--AAAACTGGAAGTTTGTACCTTTTGACCACCTG-----------------GATGATACGTGCTTCT--- GAAGTGAAATGAC--------------ATCTAAGGCAACAAAAAGGTAGGGGACT >Sus_scrofa AAATCTGTTTTTTCCAA--CTCTACCTCT--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------GTCTTTTCTAGGAGTTTCATGGTG-----------GCCA--- --GATTT--------TTTCCAGTTTTAC---GATATGATTGACATAT-AATACTGCATATGTTTAAGGTGCAC------- --------------------------ATATTTTGTGGAATGATTACCACACT---AAGTTTA---AAC--ATCCATCATC TCAAATAGATACAATT----------------------------TTTTTTCTTACC-TAAGAGCTCTTATTATTTACTCT TTTAACACCTTTCAATTATGCC-TACAGCAGTGTTAACTACAGT----CATTATGTTGTTTGTGTCATCCCTAAACAC-T TATTTATCTT--AAAACTAGAAGTTTGTA-CTTTTGACTACTCT-----------------CCTGATAGCTGTTTCT--- GAAGTGAAATGACATCATG------GTATCTAATGCAACAAAAAGGTAAGGAACT >Bos_taurus AAATCTCCTTTCCCAA---CGCTACCTCT--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------GGCTTGCCTG--AGTCTCCAGGTA----TATGCTGGTCG--- --TTTTT--------CCCCCAATTCTAT---GATACAATCAACATAT-AATGCTGTATGTGTTTAAGTCATATAACATA- -----------------------------------------------------------TGACTTAAC--ACCCATCACC TCATAGGACTAAAAAA---------------------TGATTTTTTTTTTCTTACAATGAGAACTCTTA--ATTTACTCT TTTAACAACATTCAAAAATAGTGTACAGCAGTGCTAACTACAGT----AATCTTATTGTACATTTCATCCCT-AGTAC-T TTTTTATCTC--ATATCTGGAAGTTTATACCTTTTGACCACCGT-----------------CATGATAGCTGTTTCT--- GAAGTGAAATGACATCATT------GTGTTTAATGTAACAAAAAGGGAGAGGATT >Equus_caballus AAACCTACTTTTTCTGT--CTCTACCTCT--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------GTCTTTCCTG--AGTCTCATGGTA----CATGATAGCTGGAG G-TTTGT--------TTCCCAGTTTTACTGAGATAAAATTGACATAC-ATCACTGTGCACATTTAAGGTGTAGGGCATAA TGATTCGA-----------CTCAC--ATGTGTTGTGAAATGATTACCACAAT---AAGTTTAATTAAC--ATCCATAATC TCATATGGATACAAAA------------AAAAAAAAGAAAAAGATTTTTTTTTGTAATGAGAACTCTTAGGAGTAAATCC TAAGACAACTTTCAAATATACTATACAGCAGTGTTAACTATAGT----CCAAATGTTATACGTTGCATCCCT-AGTAC-A TATTTATCTT--AGAACTGGAAATTTGTACCTTTTGACCACTTT-----------------TGTGATAACTGTTTCT--- GAAGCGAAATGACATTATT------GTATCTACTGCAACAAAAATGGAAGGCATT >Ceratotherium_simum AAACCTACTTTTTCCAT--CTCTATCTCT--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------GTCTTTGCTG--AGTCTGATGGTA----CATGATATCTAGAG GGTTTTT-------TTCCCCAGTTTTATTGAGATATAATTGATATAC-AGCACTGTATAAGTTTAAGGTGTACAATATAA TGATTTGA-----------CTTAC--ATATATTGTGAAATGATTATGACAAT---AAGCTTAATTAAC--ATCCATCATC TCATATAGATACAAAA------------AAAAAAAGAAACATGTCTTTTTCTTGTAACGAGAACTCTTAGGATTTACTCT CTTAACACCTTTCAAATACACCATACAGCAGTGTTAACTATAGT----CAACATGTTGTACATTACATCCCT-AGTAC-T TATTTATTTT--ATAACTGGAAATTGGTACCTTTTGACCACTTT-----------------CATGATAGCTGTTTCT--- GAAGTGAAATGACATTATT------GTATCTAATACTACAAAAAGGGAGGGGATT >Condylura_cristata AAGCCTACTTCTTTCAT--CTCTAACAT---------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------ATCTTTCCCAAGAGTCTCATAGTA----TATGATAGCTGTA- --TTTTT-------TCTTTTAGCTTTATGGTGATGTAATTGCTGTAC-AGCACTGTATAATTTTAAGGTACACAACATAA TGACTTGA-----------CTTAT--AT---------------------------ATGTTTGATTCAT--ATCCAGTATC TTATATAGGTAGAAAA-----------ATATGAAAAGAAAAAGTTTTGTCCTTACCACAAGAATGCTTAGCATGTATTCT TTTAATAACTGTCATACATCTTGTA---------TAGCTATAGT----TATC-TGATGTATATT-CATCCCT-AGTAC-T T-----------ATAACAGCAAACACAAATCTTTTGACCATCTT-----------------CATGATAGCCATT--T--- GAAGTGAAGTGACATCATT------GTATTTAATACAACAGAAAAGGAAGTGATT >Sorex_araneus AAACTAACCTTCTCCTT--CTCTATCC----------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------TGCTTTTCTAAGAGATTCATTATT----TAG--TAA------ --TTTTT--------CCC---ACCTTATTGAACTATAGTGGCCATAT-AGCATTCTATAAATCTGAGATGCTTCGCTTAA TAATTTGAATCATTGAAAGCATAC--AA---TTGTTAAATGATTGCTATAAT---ACATT--GCTAAT--ATCTTTGATC TCATATCGATACCAAA----AA-------------------------------------GGAACTCTTAGGATCTCCTCT C--AATAATTTT---------------------TTATTTATGACCCATTATCATTTTGTACATTTCATTTTA--TTATAT CCTTGACACT--GAGTCCA---------AGCTTTTGTCTACTTT-----------------TATAATAGTCATTTCT--- GAAGTGAAACCATATCATT------GTATTTAATGCAACAAAAAG--AATAGATT >Desmodus_rotundus AAACCTACTTTTTTCAT--CTCCATCTTT--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------GTGTTTCCTAAGAATCTTGTGGTA----TATGAAAGGTG--- --TTTCT------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- GAAGTGAAATGACATCATT------GCAGCGAATGCAACAAAAAGGAAGGAGACT >Rhinolophus_ferrumequinum AAACCTACTATTTCCATAGCTCTGTCTTTCATAAGAGTCTCATGTGTGAGGTGTAATCAAACAAATGGTGAATGTTTAAA TTAAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTACAGTAAAAAAA CACATTGCCATTAATCCCCCTCAAAATATTCCCCCTCTCTTTGAACACACGGATCCCATTGTTCTTGCCACTTTCTGAAG CAGTTCTGGGAGTCCTCTTTCATGAGTGTCTTTAGTTGTGCTGTCGTGGCTGTCTTGATGTCCTGAAACATTTTGAGTTT GGGGAAGAGCCAGAAGTTGCACGGTGCCAGATCCAGTGAATAAGGTGGTTGAAGACGCACCATAATGGTTTTATGTGACA GAAATTGCCGTATAACAGAAGCAATGTGTGACATGGGGCGTTGCCATGATGATGGATGATTTATGGTACACTTTAAAACA CACCTTCTCCCATCTGTAGCTCACATCTGACTGACTGCACTGAACAATTTGAAACTTTTCACACACTGTTACTAAGAGTC ATCTCGCTAATTCCTGTATTGAAGATCCCTGCCTTTCCATTGGGTGGCACTTGGCAGCAGCATTCACTGTATGTTTTGAT CACAGCGGAAAGGCTCTGTTTCACACATTGTTTCTGGTATGGCAATTTCTGTCAAATAAAAACATTACGATGTGTTCTTA TCCACCTTATTCACGGGATCTGGCACCATGTGACTTCTGGCTCTTCCTCTAAGTCAAAATGACCATGAAAGGTAAACATT TTGAATCAATTCAGGACATCAAGGCAGTCACTACAGCACATCTAAAGACAATCATAAAACAGGACTTCCAGAACTGCTTC AGAAAGAGGTAAGAACAATGGGATAAGTGTGTTCAAAGAGAGGGGGAGTATTTTGAGGGGAATTAATAGCAATGTGTCTT TTATTGTAATAATTTTTTAAAATGTAAATATTCACCGTATTTTTTTATCATACCTCA---TA----TATGATAGGCA--- --TTTTT------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- GAAATGAAATGTCATCATTGTATGAGTATCTAATTCAACAAATAGGGAGGAGACT >Homo_sapiens GTGCCTACT-TTTCCGT--CCCTACCTTT--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------GACTTTCCTAAGAGTGTCATGGCA----TGTAATAGCAG--- --TTTCT------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- GAAGTGAGATGACATCACC------ATATTTAATGCAACAAAAAGGGAAGGGGTT Dog412_LINE >L1_CARN7_3END -------------------------------------------------------------------------GATGGTA ACTAGACTTATTGTGGTGATCACTTCACAATGTATACAAATGTCGAAT-CACTATGTTGTACACCTGAAACTAATATAAC ATTGTATGTCA----ATTATACTCAAATAAAAAAA--------------------------------------------- ---------------------------------- >Canis_familiaris AACC-ATCAGGCAGAATTAATTGAGTGTACTGAAAGGTCTGGAAAGCTCTA---AAAATCATCACAATTA---------- --CAGATTGGTTTTGGAGATTATTTTACAATATACACAAATATTATAT-CATTATGTTGTACACCTAAAACTAATATAAT GTTATATGTCA----ATTCTATCTCAACAACAACAACAAC---AATAAAATCACAATTA---TTCAAAGGAGATTTAGGG ATAAAGGCCAACAACAAATTCT-ACTTTTTCAGA >Felis_catus AACCTGTTAGGCAGAATTAGTTGAGTTTACTTAAAGGTCTGGAAAGCTATA---AAAA-AATCATAATTA---------- --CAGACTTAT-------------TTGTAATATATACAAATACCATAT-CATTATGTTGTATGTCTGAAACCAGGATAAT GTTATATGTTT----ATTATACCTCAACAA-------------CAAAAAAGCACAGTTA---TTCAAAGGAGATTTAGAG GTAAAGGCCAGCAACAAATTCT-GCTTTTTCAGA >Manis_pentadactyla AACCTGCTAGGTAGAATTTGTTGAGTTTAGAAAAAAATCTGTAAAGTCATG---AAAAGATTCACAATTA---------- --CAAATTTATGATAGTGATCATTTTTCAATATATACAAGTACTGTAT-TGTTATATTGTACACCTGAAACTATATACAT GT----TGTCA----ATTATGCCTCAATTTTT-----------AAAAAAATCACCATTA---TTCAAAGGAGGCTTAGAG GTAAGGGACACCAACTAATTCT-ACTTTTTCAGG >Sus_scrofa AACCTGTTAGGCAGAATTAGTTCAGCTTAGATAAAGGCCTGGAAAGCCATG---AAAATAATCATATTTA---------- --TAGACGTATCATGGTGATCCTTTTGCAACATATACAAATATCAGAT-CACTATGTAGTACACCTGAAACTGAAATAAC ATTGGATGTTATATTAGCAAAATTTAAAAAAAAT---------TTAAAAATCACAGTTG---TTCAGAGGAGACTTAGAG GCAAAGGCTACCAACAAATTCT-GTTTTTTCTTG >Tursiops_truncatus AACCCATCAGGCAGAATTAGTTGAGTTTAGATAAAGGTCTGGAAAGCCATG---AAAATAACCGTAATTA---------- --TAGAC--ATTGTGGTGATTGTTTTGCAATATATACAAATATCAAAT-CATTATGCTGTACTCCTGAAACTAA-ATAAC GTTATCTGTCA----ATTATACCTCAAT---------------AA--AAATCACAGTTA---TTCAAAGGAGGTTTAGAG GTAAAGGCCACCAACTAATTCT-GCCTTTTCAAG >Equus_caballus AACCTGTTAGGCAGAATTAATCGAGTTTAGATAAAAGCCTGGAAAGCCATG---AAAATAATCACAATTA---------- --TAGACTTATTGTGTTGATCACCTTACAATATGTATAAATATCTAAT-CATTATGTTGTACGCTTGAAATTAATATAAT GTTATATGTCA----ATTATATCTCAATG--------------AA-TGAGTCACAATTA---TTCAAAGGAGATTTAGAG GTAAAGGCCACCAACAAATTCT-ACTTTTTGAAG >Ceratotherium_simum AACCTTTTAGACAGAATTAGTCAAGTTTAGATAAAGATCTGGAAAGCCAAG---AAAATTACCACAGTTA---------- --TAGACTTATTGTGGTGATCATTTCACAATATATATAAACACCTAAT-CATTATGTTGTACACTTGAAACTAATGTCAT GTCGTATGTCA----ATTATATATCAATAA-------------AAATAAGTCACAATTA---TTCAAAGGAGATTTAGAG GGAAAGGCCACCTACAAATTCT-GCTTTTTGAAG >Myotis_myotis NNNNNNNNNNNNNNAATTAGTTGAATTTAGAAAAAGATCTAAAAAACCATG---AAAATAATAACAATTA---------- --TAGGCTTATTGTGGTGACCATATCACAGTATATATAAATAATGAAT-CTTTGTGTTATACACCTAGAACTAACCTAAT GTTATATGTCA----ATTATACCTCAAT---------------AA--ACATCATAATTA---TCCAAAGGAGATTTAGAG GTAAAGGCCATCAACAAATTCT-GCTTTTTTCAG >Rousettus_aegyptiacus AACCTGTTAGGCGGAATGAGTTGAATTTGGAAAAAGGTCTGGAAATACATG---AAAATAATCACAACTG---------- --GAGACTAATCATGGTAACCATTTATATATATATGTATATTTTACATACATTACATTGTACACCTGAAACTAATATAAT GCAACATGTCA----ATTATACCTCAATAA-------------AAAAAAATCACAATT----TCCAAAGGAGATTTAGAG ATAAAGGCCACTGACAAATGCT-GCTTTTTCCAG >Condylura_cristata AATCTGTTATATAGAATAAGT-GAGTTCATATAAAGGTCTAGCAAGCCATG----------------------------- -------------------------------------------------------------------------------- -------------------------------------------GAA-TAATCAAAATTA---TTCAAAGAAGATCTATAG GCAAAG---ACCAATAGATTAT-GCTATTT--AG >Solenodon_paradoxus AACCTGTTAAGCAGAATCAGTTGAATTTAAATAAAGGACTGGAAAGTCAAG----------------------------- -------------------------------------------------------------------------------- -------------------------------------------AAAATAATCACTATTA---TTCAAAGGAGATTTATAG ATAAAGACTAGCAATAAATTCTGGCTTTTC--AG >Homo_sapiens AGCCTGCTTAGTAGAATTAGTTGAGTTTGGGTAAAGCTCTGGAAAGTCATA----------------------------- -------------------------------------------------------------------------------- -------------------------------------------AAAATAATCACACTTA---TTCAAAGGAGA--CAGAG GTAAGGGCTACCAACAAATTCT-GCTTTTTCAAT Dog413_LINE >L1_CARN7_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------TTTTTTTATTTGA --GTATAATTGACA--TACAATGT----------TA-TATTAGTTTCAGGTGTACAACATAGTGATTCGACATTTGTATA CATTGTGAAGTGATCACCACA-------------ATAAGT-CTAGTTACCATCTGTCACCATACAANGT----------- ------------------------------------------------------------ >Canis_familiaris TATTTCTGTATGATGAACTT------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------TAATACATTATTCACT-- -------------------------------------TGACTTACCTT--------TTTTTTTGCATAGGAGGAAATGCC TA--ACAGTGGACAGCATATAACAATAAT----CAATTAATGATTATTTTAAACAAATCAAA-TAACATAAGCCAACTTT CTTTTTCTCTTTTATTTATTTT--TTTAAGTGCATCTGT----CTATATTT----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------TAG-TTTTAACTTCCT-AATTTTGTCATCTTCTT-GGGCTCCAGTT----TTTCAGTTTTATTGA G-GTATAGTTGACA--TATAAGATATAAATGACATATAACATGTTTCTGGTATACATGATGATAA--CAATATTTGTATA CAATGCAAAATGATCACCACA-------------ATAAAT-CTAGTTAACACCCATCACAA-----------TATTTGAC TTACCTT---GAAATCATTTATTGAGAACATAAATTCTGGGAACCATGGTATTTGGAAGA >Felis_catus TCTTTCTGAAGGATGGACTT------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------TAAAATATTTTTCATT-- ---------------------------------T--TTCATTTTCATT----------TTT------------------- ------------CAGCAAATAACAA-------TCAATAAATGATTATTTTAAACAAA------TGACATAAACAGGACCA GTTACTTCTTTTCTTTCCTTCTTTTTCTAGTGCTGCTGTCTATCTTTATTT----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------TAT-TTTTAGCTTCCT-AGCTATGTCATCCTCTT-GGACTCCAGTTTTT-CAACTTTATTATTGA G-GTATAATTGACA--CATAACAT----------TA-TATTAGTTTCAGGTGTGCAACATAATGATTAAATATTTGTATA ATTTCAAAAATGATCACCACA-------------ATAAAT-CTAGTTAACATCCATCACCA-----------TGTTTGAC TTACCTT---GAAATCATTTATTGAGAACATAAATTCTGGGAACCATGGTATTTGGAAGA >Manis_pentadactyla ACTTTCTTAAGGATGGACTTTAATT------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------TGAAATGTTTTTCATT-- ----AATAATAATACATTA---------TT---TG-TTGACTTACCTT-------TTTTTTTGGCATAGGAGGAAATGTC TA--ACAGGGCATAGCACATAATAGATGT---ACAATAAATGTTTATT---------------CAACATAAGCAGGACTA TTTT--------------------TTTTAGTGCCTCAGTGTACCTTTACTT----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------TAT-TTTTAACTTTCT-AATTTTCTCATCTTCTT-AAGCACT--------TGTTTTTTTAATTGT GAGTATAATTGACA--TATAACAT--------------ATTAGTTTCAAATGTACAGCATAATGATTCAATATTTGTATA CATTGCAAAATGATCACCACA-------------ATAAGT-CTAGTTAACATCCATCACCA-----------TGTTTGAC TTACCTT---GAAATCATTTATTGAGAACATAAATTCTGGGAACCATGGTATTTGGAAGA >Sus_scrofa TCTTCCTTAAGGATGGATTTTAATT------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------TCAAATATTTTT-ATT-- ----AATAATAAGACATTA---------TT---TGTTTGACTTACCTT---------TTGTTGGCATGGGAGGAAATGCT TAACACAGTGAATAGCACATAACAGATGT---ACAATAAATGACAATTTAAAACAAATCAGAACAACATAAACAGGACTG GTTTTGTTGGGGTTTTTTGTTTGTTTTTAGTGCTTCAGTCTATCTTTATTTTTATTGTTTTATGGCCACACCTGAAGCAT ATGGAAGTTCCCCAGCCAGGGACTGAATCTGAGCTGGAGCTTTGACCTAGGCAGCCACTGTGGCAATGCCAGATCCTTTA ACCCACTGTGCTGGGCTGGGGATTGAATCCATGCCTCTACAGTGATCTGAGCTGCTGCAGTTAAGAGTTTTTTCTTTTTT TTTTTTTTTTTTTTTTTTGCTTTTTAGGGCTGAACCCGTGGCATATGGAGGTTCCCAGGCTAGGGGTCGAAATGGACCTG CAGCTGCTGGCCTACACCACAGCCACAGCAACATGGGATCCTTAACCCACTGAGTGGAGGCCAGGGATCAAACCTGTATC CTCATGGATCCTAATCAGGTTCATTAACCGCTGAGCCACAAGGGGAACTCCTGAAGTCAGATTCTTAACAGATTGCTCCA CAGTGGGAATTCCTCTTTCTTTTAACTTCCT-AATTTTGTCATCCTTTT-GGGTACCAGTCT---TTCTTTTTTAATTGA A-GTATGATCGACTTCTATAACAT----------TA-CATTCGTTTTAAGTGTACAACATAATGATTCAATGTTTGTAAA CACCACAAAATGATCACAACATAAGATCACAGACAAAAAT-CTGGTTAACAACCATCACTA-----------CATTTGAC TTACCTT---GAAATCATTTATGGAGAACATAAATTCTGGAAACCACGGTATTTGGAAGA >Vicugna_pacos TTTCCCTTAAGGATGGATTTTAATT------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------TTACATGTTTTTCATTA- ----AAAAATAATATATTA---------AT---TGTTTGACTTGCCTC---CCCCTTTTTTTTGCATACGAGGAAATGCC TA-----ATGCACGGCATGTAACTGACAC---ACAATAAATGCTTATTTAAACCAGATCAGAACAACACGAGCAGGACTA GCTTTGTGGGGGTTT---GTCTGTCTTCAGTGCTTCAGTCTATCTTTGT------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------GAT-TTTTAGCTTCCT-AGTTTTGCCATCCTCTT-GGGCGTCAGTCT---TTCTTTTTTAGTTG- --TTACATTTGACA--TATAGCAT----------TG-TATTAGTTACAAGGATACAACATAATGCTTCAATATTTGTATA CATT-CAAAATGATCATCACA-------------ATCAGT-CTGGTTAACATGCATCCCCA-----------TGTTTGAC TTACCTT---GAAATCATTTATGGAGAGCATAAATTCCGGGAACCATGGTATTTGGAAGA >Equus_caballus TCTTTCTTAAGGATGGACTTTAATTTAAAATGTTTTTCAGGGGCCGGCCTGGTGGTGTAGTGGTTAAGTTCATGCACTCC ACTTCAGCAGCCCTGGGTTTGCAGGTTCAGATCCTGGGCGTAGACCTAGCACCACTTATCAAGCTATGCTGTGGCGGCAT GCCACATAAAATAGAGGAAGATTGGCAACAGCTGTTAGCTCAGGGCCACTCTTCCTCACAAAACAAACAAATAAAGTAAA TAAATAAATGCTTGGGCAAAAAAAAGAGTATCTACATAAATTATTAAAAAAATAAAATAAAATAAAATGTTTTTCATT-- ----AATAATAATATATTA---------TT---TGTTTTACTTAACTT--------TTTCTTTGCGTAGGAGGAAATGCC CAATACAGTGCACAGTATGTAACAGATGTATAATAATAAATGATTATTTAAAACAAATCAAAACAACATAAGCAGAACCA GTTCTT------------TTTTTTTTTTAGCACTTCAGT----CTATATTT----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------TAT-TTTTAACTTCCTAAATTTTGTCATACTATT-GAGCACCAGTCTT--CCTTATTTTTATTTA G-GTATAATTGACA--TATAACAT----------TA-TATTAGTTTCCTGCATACACCATAATGATTCAACATTTGTATA CATCACAAAATGATCACCACA-------------GTAAGT-CCAGTTAACACCCATCACCA-----------TGCTTGGC TTACCTT---GAAATCATTTATTGAGAACATAAATTCTGGGAACCATGGTATTTGGAAGA >Ceratotherium_simum TCTTTCTTAAGGATGGACTTCAATT------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------TAAAATGTTTTTCATT-- ----GATAATAATATGTTA---------TT---GGTTTCACTTACTTT------TTTTTTTTTGCATAGGAGGAAATGCC TA--ACAGTTCACAGTACATAACAGATGTTCAATAATAAATTATTATTTAAAACAAATCAAAACAACATAAGCAGGACCA GTTCTTTT----------TTTTTATTTTAGTGCTTCAGT----CTACATTT----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------TAT-TTTTAATTTCCT-AATTTTGTCATACTTTT-GAGCACCAGTC----TTTTTTTTTTATTGA G-GTATAATGGACA--TATAACAT----------TA-TATTAGTTTCATGTGTACACCACAATGATTCAATATTTGTATA CATTGCAAAATGATCACCACA-------------GTAAGT-CAAGTTAACATCCATCACCA-----------TGCTTGGC TTACCTT---GAAATCATTTATTGAGAACATAAATTCTGGGAACCATGGTATTTGGAAGA >Myotis_myotis TCTTTCTTAAGGATGGACTTTAACT------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------TAAAATATTT-------- -----------------------------------------------------TTTTGTTTTTGCATAGGAGGAAATGCC TAACACAGTGCCCACAATATAACAGATGT---TCAATAAATGGTTATTTGAAACAAAGCAAAACAACACAAGCAGGACCA GTTCTTTT----------CTTT--TTTTAATGCTTCAGTCTATC-----TT----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------TAT-TTTTAACTTCCT-AATTTTGTCATCTTCTTAGGGCACCAGTCTTTTTTTTTTTTTAATTGA G-GTATAATTGTCT--TATAACAG----------TAGTATTAGTTTCAGGTGTTCAACATAATGATTTGCTA-TTGTATA CATTGCAAAATGACCACTGCA-------------ATTAGCACTGGTTAACATCTATCACTA-----------CATATGAC TTACCTT---GAAATCATTTATTGAGAACATAAATTCTGGGAACCATGGTATTTGGAAGA >Rousettus_aegyptiacus TCTTTCTTTAGGATGGACTTTAATT------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------TAAAACGTTT-------- ---------------------------------------ACTTTTTTT------------TTTTCTTAGGAGGAAATGCC TA--ACAGTGCACAGCATATAGCACATAT---GTAATAAGTGATTATTTAAAACAAA-----ACAACATAAGTAAGACCA ATTCCT------------------TTTTAGTGCTTCAGTC---------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------TATATTTTAACTTTCT--AATTTGTCATCCTCTT-GGGCGCTAATCA---TTTTTTTTTAGTTGA G-GAATAATTGATA--TATAACAT----------TAGTATTAGTTTCAGATATATAGCATAATGATTAGATG-TTGTATA CATTGCAGAATGATCACCACA-------------GTAAGTACTAGTTAACACCCATCACTA-----------TGTCTGAC TTACCTT---GAAATCATTTATTGAGAACATAAATTCTGGAAACCATGGTATTTGGAAGA >Condylura_cristata ACTTTCTTAACGACGGGCATTTATT------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------TAAAATGTTTTTCATT-- ----AACAAGCATACACTA---------TT---TTTTTGACTTACCTT-------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------GAAATCATTTATTGAGAACATAAATTCTGGGAACCATGGTAATTGGAAGA >Sorex_araneus TCTTTCTGAAAGGTATACTGTAATT------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------TGAAGTGTCTTTCATT-- ----AATAACAATACAACA---------TT---TGTTCAACTTACCTT-------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------GAAATCATTTATTGAGAACATAAATTCTGGGAACCATGGTATTTGGAAGA >Homo_sapiens TTCTTCTTAAACGTGGACTT------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------TAAAATATTTTTCATTAA TAATAATAATAATACATTATTTGTTTGATT---TGTTTGGCTTACCTT-------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------GAAATCATTTATTGAGAACATAAATTCTGGGAACCATGGTATTTGGAAGA Dog415_LINE >L1_CARN7_3END -------------------------------------------------------------------------------- ----------TGGTGATCACTTCACAATGTATACAAAT------------------------------------------ ---------------------------------------------------------GTCGAAT---------------- ----------CACTATGTTGT----------------------------------------------------------- -------------------------------------------------------------------------------- --------ACACCTGAAACTAATATAACATT--GTATGTCAATTATACTCAAATAA------AAAAA------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------- >Canis_familiaris ATAGGCTG---TGAATATATTT---AGAC-TTTATTCTTTACAGATATTTATCTATT---AATAAAAATATTTAAAACCG AACTGAA---------------------GCATACAAGT------------------------------------------ ---------------------------------------------------------ATTGAAT---------------- -------------CATGTTGT----------------------------------------------------------- -------------------------------------------------------------------------------- --------ATATCTGAAATTAATACAAAGTT--ATATGTCCATTATACTTCCGTAA------AAAGG----AAAAAAACC CTACGG--TTTACAAAATAA--------CCCCAAAACTGAAAAAGACAGTTTTTTAAAAAAATTTTTATTTATTTATGAT AGTCACACAGAGAGAGAGAGAGAGAGAGAGAGGCAGAGACATAGGCAGAGGGAGAAGCAGGCTCCATGCACCGGGAGCCC GACTTGGGATTCGATCCCGGGTCTCCAGGATCGCGCCCTGGGACAAAGGCAGGTGCTAAACCGCTGCGCCACCCAGGGAT CCCTGAA---AAAGACAGTTTTATA-TGATATAAAGCAATTGT--ATTTCTTTTAGGAGGTAT >Felis_catus ATAGAGTG---TGAATATATTTTACAGAT-TTTTTTCTCCACAGATATTTATCTATT---AATATAAAAATTTAAAACCA AACTGAA---------------------GTGTACAAAT------------------------------------------ ---------------------------------------------------------ACCAAAT---------------- ----------CATTATGCTGT----------------------------------------------------------- -------------------------------------------------------------------------------- --------ATACCTGAAGTCAATATAATGTT--ATATTTCTATTATACTTGAGTAAAAA---GAAAG---AAGTAAAAGA CTACAG--TTTGCAAAATAA--------CCCCAGAGCTG----------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AA---AAAGACAGTCTTATG-TGATATAAAGCAATTAT--ATTTCTTTCAGGAGATAT >Manis_javanica ATAGACTG---TGTAT-TATTTTGTAGAC---TTTTCCCCACAGGTATTTGTCTATT-----AACAAAGATTTTAAGCCA AACTGAA---------------------ATCTACAAATAGGAAACTGTAACTAATATANAATAGCAATACTGCTTATTAT CCTTAAAAGGAATTATCCACCTATTCTGTAAAAGGTTAATTAGTCATAAGGGATATAATTAAATATAGACTGTGTATTAT TTTGTATTTGTATTATTTTGTAGACTTTTCCCCACAGGTATTTGTCTATTAACAAAGATTTTAAGCCAAACTGAAATCTA CAAATAGGAAACTGTAACTAATATANCAAAGATTTTAAGCCAAACTGAAATCTACAAATAGGAAACTGTAACTAATATAA TGAAACTAATACCTGAAACTAATATAATGTTACACATGTCAGTTATACCTCAATAAAA----GGAAA---AAAGAAAAGA TTGCAG--TTTATAAGAAAA----ATAA---CAAAACTG----------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AA---GAAA----ACTTAGA-TGATACAAACTGATTT---ATTTCTTTTAGGAGATAT >Sus_scrofa ATTGACTA---TGAATACATTTTACAGACTTTCCCGTCCTACCCATTGTTTTCTGTT---AGTCTAAAAATTTAAAACCA GA-TGAA--------------------GGCATACAAAT------------------------------------------ ---------------------------------------------------------GTCAAAT---------------- ----------CATTACATTGA----------------------------------------------------------- -------------------------------------------------------------------------------- --------ACACCTGAAACGAAT---ATGTT--ACATGTCAATTATAGCTAATTAAA-----TAAAA---GAAGAAAAGA CTAGAG--TTTAAAAAAAAA----AAATCCCCAAA-GAG----------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AA---AAAGACAGTC--ATG-TGATATAAAGCCTTTAT--ATTTCCTTTAGGAGATAT >Bos_taurus ATAGACTA---GAAATACATTTTACAGAC--------CCGCCCCGTAGTTTTCTATT---AATATGCAAATTTAAAACCA GACCGAA---------------------GCATACAAAT------------------------------------------ ---------------------------------------------------------ATTAAAT---------------- ----------CATTGTGTTGA----------------------------------------------------------- -------------------------------------------------------------------------------- --------ATACCTGAAACTGCT---ATGTT--ACATGTCAACGGAAGCTCCATT-------AAACA------------- -------------------------------------------G------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AA---AAAG--------ATA-CGATATAAAGCAATTAT--ATTTCTTTTAGGAGATAT >Equus_caballus ATAGACAG---TGAATATATTTTACAAACTTTTTTCCCCCACGGGTAATTGTCTATT---AATATAAAAATTTAAAACCA AACTGAA---------------------GTATACAAAT------------------------------------------ ---------------------------------------------------------ATCGAAT---------------- ----------CATTTTGTTGT----------------------------------------------------------- -------------------------------------------------------------------------------- --------ACACCTGAAACTAATATAATGTT--ATATGTCACTTATACCTCAATGA------AAAAA----ATGAAAAGA TTGCAG--TTTACCAAAAAGA---AAAACCCCAAAAAACAACTA------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AA---AAAGACAGTCTTATA-TGGTACAGAGCAATTAC--ATGTCTTTCAGGAGATAT >Ceratotherium_simum ATAGACTG---TGAATATATTTTACAGAC-TTCTTCCCCCACAGGTAGTTGTCTATT---AATATAAAAATTTAAAATCA GACTGAA---------------------GTATACAAAT------------------------------------------ ---------------------------------------------------------ACCAAAT---------------- ----------CATTAAGTTGT----------------------------------------------------------- -------------------------------------------------------------------------------- --------ACACCTGAAACTAATATA-------ATATGTCAATTATATCTCAATAAAAAAAGGAAAA---AGAGAAAATA CTGCAG--TTTACCAAAGGAAGAAAAAAGCCAAAAAGCG----------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AA---AAAGACAGTTTCATG-TGATACAAAGCAATTAT--ATTTCTTCTAGGAGATAT >Myotis_myotis ATACAC-----TAAATATTTTTTGTAGAC----TCCCCCCAAAGGTAATTGTCTGTT---ATTATAAAAATTTAAAACCA AACTAAA---------------------GTATGCAAAT------------------------------------------ ---------------------------------------------------------ATCAAAT---------------- ----------CATTGTGTTAT----------------------------------------------------------- -------------------------------------------------------------------------------- --------ACACCTGAAACTAAT---ATGTT--ATACGTCAATTATACCTCAATTT------AAAAA---AAAGAAAAAA CTG----------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AA---AATTATGGTCTTTTG-TAATATAAAGCAATTATACATATTTTTTAGGAGATAT >Rousettus_aegyptiacus ACAGACTT---TGAATATATATTACAGAC-TCCCCACTGCACATGTAATTGTCTATT---AGTATAAAAATTTTAAACCA AACTGAA---------------------GTATGCAAAT------------------------------------------ ---------------------------------------------------------ATCAAAT---------------- ----------CATTATTTTGT----------------------------------------------------------- -------------------------------------------------------------------------------- --------ACACTTGAAACTAATATAATGTT--ATATGTTAATTATACCTCAATTTAAAATAAAAAA---GGAAAAGAGA CTGCAG--TTTATAAAAAAAGAA-------CATG---------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AA---AAATATGGTCATA----AATATGAAGCAATTAT--ATTTCTTTTAGGAGATAT >Condylura_cristata ATAGGTGG---TGAATATATTTTACAGACTTCCCCCAGCTTCCATTTTTTATCTGTT----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------AATAT----- -AGTAG--TTTAAAA-------------CCCATCTG-------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AA---AAAGACTGTCTAATA-TGATATAAAGCAGCTTT-TTTTTCTTTTAGGAAATGT >Erinaceus_europaeus GAAGAT-----TGAATAT-CTTTACAGACTCCCCTCACACCTAAGTTATTGTCTGCT----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------AACA------ -TGCAAA-TTTAAAA-------------GCCAACTGG------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----AA---GAAGTCCGTCTTATATTGGTATAAAACAATTAT-TTTTTTTTTCAGGAGATAT >Homo_sapiens ACGGACTTCACTGAGTATATTTTACAGGC--TTTTTCTCCACAGGTAGGTGTCTACT----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------AATATAAAGA -TGTAAAATTTAA---------------ACTG------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----GA---AAAGACAATCTCATA-TGATATAAAACAATTAT--ATTTCTTTTAGGAGATAT Dog418_LINE >L1_CARN7_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------ATATTGTANTAACNTTGTATGGTGACAGATGGTAACTAGACTTA-----TTGTGGTGATCACTTCAC AATGTATACAAATGTCGAATCACT-ATGTTGTACACCTGA--AACTAATATAAC--ATTGTATGTCAATTATA-CTCAAA TAAAAAAA------------------------------------------------------------------------ ----------------------------------- >Canis_familiaris CCAGGCAGTCAGG-ACTTTCTCT--------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------TCTGACACAGCAAATTTATGGGTAGTTTTATAG---AAA ACTATGTTTT----------TGTAACTATCTATGGTGAGGGATGTCAACTAGACTTG-----TTGTAGTGATTATTTCAC AATAGATACAAA-------TCATTTATGTTGTATACATGA--AAC------------ATCTATATCAATTATATCTCAAT TTTTTA-------AAATAT----AGG---GAAAGTCATATATTTA-AACACTGGAATGCATTTCC------ATCAGAAAA AGGGTTT-CAGTGGTGATTATG----TTCCCAGGT >Felis_catus CCGGGCAGTTTTG-ACTTTCTCC--------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------TCTGACACACCAAATTTATGGCTAGTTCTACAC---AAA GGTATTTTTT----------TGTAATTATGTATGGTGAGGCATGTCAAGCATACTTA-----TTGTAGTGATCATTTCAT AATAGGTACAAATG-----TCATTTATGTTGTATACCTGA--AATTAA------------CATGTCAATTATACCTCAA- --TTTA-------AAAAAAATGCAAC---AAAGTCCCCTTATTCA-AAAACTGGAATGCATCCCCCCTCCCAACATAAAA AGGCTTC-AAGTGGTGACTGTA----TTCCCATGT >Manis_javanica TCAGGAAGTCATG-ACCTTCTCA--------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------TCTTACACAGCAAATTTATGAATAG-TTTATAT---AAA ATCATGTGTT----------TGTAGTTATGTATGGTGACTGATGTTACCTAGACTTA-----TTGTGGCGATCATTTCAC AAAGTGTACAAATATCAAATCATT----GTGTGCACATGA--AACTAGTCAAACTAGTGTTATGCCAATTACACCTCAA- ----TAAAAA---GCACACATGCATT---CAAAGTCCCTTGTTCA-GAAATCAGAATGCATTTCCTCCAATAAAA----- AGGCTTT-AAGTGGTGACTAAA----TCTCCAGGT >Sus_scrofa TCAGGAGGATATGTACACGATTTAGACGGCAAACTTTTTTTGTCTTTTCTAGGGCTGCTCCCACAGCATATGGAGATTCC CAGGCTAGGGGTCGAATCAGAGCTGTAGCTGCCGGCCTATGCCAGAGTCACAGCAACGTTAGATCCAAGCCGCATCTGCA ACCTACACCACAGCTCACGGCAACGCCGGATCCTTAACCCACTGAGCAAGGCCAGGGATCGAACCCGCAACCTCATAATT CCTAGTCGGATTCGTTAACCCCACTGCACCACGACGGGAACTCCTAAACCGCAAACTTCTGACCTGCTTTCTAT---AA- --CGTGTTTT--------TTTTTAACTATGTATGGTGACGAGTGTTAACCAGACTTAACTAGCAGTGGTGATCACTGCAC AGTACATACCAATATCAAGTCACT-ATGTTGCTCATGGTATGTACTGGTAG-----GCTGCATGTCAACTATACCTCAAA AAAAAAAAA----AA----ATGCATG---CAAAGTCACTTGTTCA-AAAAT--GCATGTATGTCCCCGACTAATA----- AGGCTTT-AAGTGGCAAT--------TCCCCAGGT >Bos_taurus TCAG-AAGTCACT-AC---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------ACCGAGACAGC-AATTAACAAATAGCCTTCTAG---GA- --TGTATGTT----------TGTAACTATAGACAGTGACAAATGTTAACTAGACTCA-----CTGTGGCGATCGCTGCAC AACACATATAAACAGCACATCATT-GTGTTA-ACACCTGA--AACGAGGGT-----GCTGCATGTCAACTATACCTCAA- ------AGA----AC----AGGCATG---CAAAGTCTCCTGTCCA-GAAACTGGGATGCACCTCCTCAAATCATA----- AGGCTTT-AAGTAAGGATTAGA----TCCCCAGGT >Equus_caballus TCAGGGAGTCACG-ACCCTCTCT--------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------CCTTACACAGCAAAGTGATGAACGGTTTTACGT---AAA AACATGTTTT----------TGTAACTCTGTATGGTGACAGACGCTAACCAGACTTA-----TTGCGGTGATCATTTCAC AATACATACAAAGATCCAATCATT-ATGTTGTACGCCTGA--AACTAATATAAT--GTTCTACGTCAATTATACCTCAAT AAAAAAAAG----AAACACAG--GTG---CAAAGTCACTTGTTCA-GAAATTGGAATGCATTTCTCCCCATAATA--AAA AGACTTTAAAGTGATGCCTAGA----TCCCCACGT >Ceratotherium_simum TCAGGAAGTCTTG-ACTTGCTCT--------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------TCTTACACAGCGAACTGATGAGTAGTTTTATAT---AAA AACGTATTTT----------TGTAACTCTGTATGGTGACA-ATGTTAACTAGACTTA-----CTGTGGTGATCATTTCAC AATACATACAAATATCAAACTATT-ATGTTGTACACCTGA--AACTAATACAAT--GTTATATGCCAATTCTACCTCAA- TAAAAACAA----ACAAACATACACA---CACAGTCACTCGTTCA-GAAATTGGAATGCATTTCTCCCCATAATA--AAA AGGTTTT-AAGTGATAACTAGA----TCCTCAGGT >Myotis_myotis CCAGG-AGTGGCG-----TCTCT--------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------TCTCACAGAGCAAATGGACGAATGGTTTTACAT---GGA AACATGCTTT-----------GCATCTGTGTG-GGGGACGGGTGCTCCCTGGACCTA--------TTCTGACTGCTCCCC AGTAGATACAAATACCGGGTCATA-ACGTTA-----------------------------CGTGTC---CACACCTCAAT TTGAAACA-----ACACGCACGCACG---CGAAGG-GACTGTTCA-GAACTTGGAACGAACGGCACCCCGGGACA--AGA GGGTTT---AGTGGGGACTGGACCGGCCCCCGCGT >Pteropus_vampyrus TCAGAAAGTCATG----GTCTCT--------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------TCTTACACCATAAATTTATGAATAGTTTTATAT---AAA AATATGTTTT----------TATAACTATGTGTGGTGACG-ATGTTAACTAGACTTA-----------TGATCATTTCAC AATAAATACAA---TTGAACCATTAATGTTGTAAAACTGA--AGCTAATAG--------TTATGTCAATTATACCTCAAT TAAAAAAAA----ACAAACGT--ATT---CAAAGTCATTTGTGCA-GAAATTGGAATGGATGTCCCCCTGTAACC--AAA AGGCTTT-AAGCGGTGATTAGA----TCCCCAGGT >Condylura_cristata TTAGGAAGTCATG-ACTTTCTTT--------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------TATTACATAGCAAGTGGATGAATAATTTCATAT------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------AAATACATGC-GT---CAAAGTCATTTGTTCACAAAAAGGGGGTGCATTTTGCCCCCTAATA--AAG AGACCTG-AAGTGGTGACTCCA----TCCCCAGTT >Solenodon_paradoxus TTTC-AAGTCAGA-ACATTCTCT--------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------TCTTATACAACAAATTGATGAATAGTTCTGTAT------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------AAAAATTTACATT---CAAAATCACTTGTTCA-GAAACTGGAATGCATTTGTTCC----ATAATAAA GGACTCT-AAGTGGTAACGAGA----TCCCCAGCT >Homo_sapiens TCAAGGAGGCATG-ACTTTCTCT--------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------TCCTACACAGCAAATGCATGAATAATTTTACAT------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------AAAAACATGTATT---CGCAGTCACTTGTTCA-GAAACTGGAAGGCATTT----------------- --------------------------TCCCCAGGT Dog419_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------AAATACTGCATGATCTCACTTATATGTGGAATCTAAAAAAGTCAAACT CATAGAAGCAGAGAGTAGAATGGTGGTTGCCAGGGGCTGG--------GGGGTGGGGGAAATGGGGAG------------ -----------ATGTTGGTCAAAGGGTACAAAG----------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------TT TCAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGTACAGCATGGTGACTATAGTTAATAATACTGTATTGTATACT TGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCACCACACACAAAAAAA-------TGGTAACTATGTGAGGTGATG GATATGTTAAT---------TAGCTTGATTGTGGTAATCATTTCA-----------------CAATGTATACGTATAT-- -CAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATT------------------------------------ --------------------------------- >Canis_familiaris TGTTTTTCACA--------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------AATCACAGAAAC-A--CTGAGGTTGAA GGACCCATTTAAAGTTA---TCATTTAAA---AAAAGTGAAATAGAATAAAAC---------------ACAAATCACGGT CTTAGATATGGAGAACAGATTGGTGATTGCCAAAGGTAGGGCACGG--GATGTGTAGAAAAT-GGGTG------------ -----------AAAGGGGTCAAAAGGTAGAAAC----------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------TT AGAGTTAT--AAA-----TAAGTCATGGGGATATAATATACAGCAGGGTCACTATAGTTAAT--TTCTGAATTGCATATT TGCAAGTTGTGAAGAGGGTAGATCTTACAAGTTCTTATAACAAGAAAAA----AATTTTTTGTAACTATGTATGGTGATG G--ATGTTACT---------TAGATGTACTGTGGTGGTCATTTCA-----------------TAATATATATTAATAC-- -TGAATCAAAATCGGTA----------CATGTAAAA-----------TTATTTTTA---TACCTA-GCTATGTGTCACAC ATAACCTCTTCT-AAATTGGGTGCTATCAAAGT >Felis_catus TGTTTTCCACA--------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------AATCATGGAAACAA--CTGAGGTGGAA GGATCCATTTAAAGTTA---TGATTTAAA---AAAAATGAAACAAAATAAAGC---------------AGAAATCAGGCT CTTAGATGCAGAGAACAGATTGGTGATTGCCAGAGGTGGGGGGTGG--GAGGTAGAACAAAT-GGGTA------------ -----------AAAGAGGTCAAGAGGTACAAAC----------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------TT ACAGTTAT--AAA-----TAAGTCATGGGTATATAATATCCAGTTTGGTCACTGCAGTTAA---TACTGAATTGCATAGT TGAAAATTGTAAAGAGAGTAGATCTTAAAAGCCCTTATCACAAGAAAAA----TATGTTTTGTAACTACGTATGGTGACA G--GTGTTACC---------TAGACTAATCATGGCGATCGTTTCA-----------------TAATATA---AAATAT-- -TGAATCAAAATCTGTC----------TCCATAAAG-----------TTATTTTTG---TATCTC-GCTACACGT--CAC GTAA---CTTCT-AAATAGTGTGCTATCAAAGT >Manis_pentadactyla TGTTTCCCACA--------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------CTTGAAGTAGGAAGACTGATTTGAAGTAGGA GGACTGATTTAAAGTCA---CCACTTAAA-------ACAAAAG-------------------------AAAAGCCAAGCT CAGAGGTACAGAGAACAAATCAGTGGCTGCCAGAGGCTGGGGGTTGA-TGGGCAGGCAAAAT-GGGTG------------ -----------AAGGGTGTCAAAAGGTACGGACT---------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------TT TCAGTTAT--AAAATAAAGAAGTCCTCAGGATGCAATGTACAGCATGGTCACTATAGTTCATTGTATTGAGTTGCATATT TGAAAGTTGCTAAAAGCATAGATCTTAAAAATCCTCCCAATAAGAAAAA--AAATTTTTTTGTAACTATGTATGGTGACA G--ATGTTAAC---------TAGACTTATTATGGTAGTCATTTGA-----------------CAATATATACAAATAT-- -CAAATAAAAAACATGC-------AAGCAT--------------------TTTTTA---TACCTA-GA---------CAC ATAACCTCTTCT-AAATAGTGTGCTATCAAAGG >Sus_scrofa TGTTATCCACA--------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------AATTATGGAAAATG--CTAAAGTGGAA GGACCCATTTAAAGTTA---TTATTTTAA---AAAAACAAAAC-------------------------AAAACCCAAGAT CATAGATATGGAGGACAGATGGATGGTTGCCAGAAGTGAGGGCTGGT-GAGGTGGGCAAAAT-GTGTG------------ -----------AAGGGCATCAAAAGGTACAGGC----------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------TT CCAGCTAT--AAAATAAATACGTTCTGGGAATGTAATGTAAAGCAGGGTCACTGGAGTTAA---TACTGAATTGCATATT TGACAGTTGCTAAGAGAGTAAATCTTGAAAGTCCTCATCACAAGAAAAAACA-CTTTTCTTGTAACTATGTATGGTGGTG G--ATGTTAACTTAAATGCATAGACTTATTGTGGTGATCATTTTGCTATACATATATATTAGCAATATATACACATATAT ATATATCAAGGA------------AAAAATTTAAAG-----------TAATTTTTA---CATCAAGGACACATGT--CCT ATAACCTCTTAA-AAATAGTGTGCTATTAAAGT >Bos_taurus TTTTTCCCACA--------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------AATCATGGAAAC-A--CTGAGGTATAA GGACTCATTTAAAGTTA---TTATTTTAA---AAAAACAAGAC-------------------------AAAAACCAAGTT CACAGATACAGAGAACAGACTGGTGATTGCCAGAAGTGAAGTGGTTGGGAGATGGGCAAAAT-GTGT------------- --------------GGAATCAAAAGGTACAGACTTCTGCTGCTGCTGCTGCTAAGTCGCTTCAGTCGTGTCCGATTCAGT GTGACCCCAGAGATGGCAGTCCACCAGTCTTCCCCGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATT TCCTTCTCCAGCGCATGAAAGTGAAAAGTGAAAGTGAAGTTGCTCAGTCGTGCCCTACTCTTCTCGACCCCATGGACTGC AGCCTACCAGGCTCCTCTGTCCATGGATTTTCCAGGCAAGAGTACTGGAATGGGGTGCCATTGCCTTCTCTGACAGACTT CTAGCTAT--AAAATAAATAACTTCTGGGGATGTAAGGTACAGCAGAGTCA-TATAGTTAGCAGTATTGAACTGCATATT TAAAAGTTGCTAAAAGAGTAAACCTTAAAAGTCCTTATCACAGGAAAAA----GATTTTTT-------TGTATGGTAAAG G--ATGTTAAC---------TAGACCTATTATA------AATTTG-----------------CAATATACATAAATAT-- ------CAAAAAGTTTA---------ACATATAAAG-----------TTATTTTTA---TATCTA-GATGCATGT--CAC ATTGCCTCTTCTGTTAAAGTGTGTTATCAAAGT >Equus_caballus TGTTTTCCACA--------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------GATAGTGAAAAC-A--CTCAGGTGGAA GGACCCATTTAAAGTTA---T-ATTTTTG---AAAAACCAAACCAAACCAATC---------------AAAACCCAAGCT CATAGATAGAGAGAGCAGATTGGTGGTTGCCAGAGGTGGGGGTTGG--GAAGTGGGC-AAAT-GGAT------------- --------------GGAGTCAAAAGGTACAGAC----------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------TT CCAGGTTA--GAAA-ATAAATGTCATGAGGATGTAATGTACAGCCTGATGACTATAGTTAATAATTCTGAACTGCATATT TGAAAGTTGCTAAGAGAGTAGATCTTAAAAGTCCTCATCCCCAGAAAAA--A-ACCTTTTTGTAACTATGTATGGTGATG G--ATGTTAAC---------TAGTCTTATTGTGGTGATCATTTTG-----------------CGATATATACACGTAT-- -TGAATCAAAAAGATTAAA-----AAATATATAAGG-----------TTATTTTTA---TATTTA-GACACAC----CAC ATAACCTCTTCT-AAATAATGTGCTATCAAAGT >Tapirus_indicus TATTTCCTACA--------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------AATCATGAAAAC-A--CCGAGGTGGAA GGACCCCTTTAAAGTTA---TCACTTTTA---AAAAACAAAACAAAA-----C---------------AAAAACCAAGCT CATAGATACAGAGAACAGATTGGTAGTTGCCAGAGTTGGGGGTTGG--GGAGTGGGC-AAAT-GGGTG------------ -----------AAGGGAGTCAAAAGGTACAAAC----------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------TT CCAGTTAT--AAAA-TCATAAGTCACGGGGATGTGATGTACAGTGTGGTGACTATAGCTAATAATACTGAATTGCATATT TGAAAGTTGCCAAGATAGTAGATCTTAAAAGTCCTCACCCCAAGAAAAA--A-TTTTTTTGGTAACTATGTATGGTGATG G--ATGTTAAC---------TAGACTTATTGTGGTAATCATTTTG-----------------CAATATGTACAAATAT-- -TAAATCAAAAAAATAAAG-----AAATATATGAAG-----------TTATTTTTA---CACTTA-GACACATGT--CAC ATAATCTCTTCT-AAATAGTGTACTATCAAAGT >Myotis_myotis TGTTTTTCACA--------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------AATCATGAGAAA-A--CTAGGATGAAT GCATCCACTTAAAGTTA---TTATTTAAA------AACAAAAC-------------------------AAAAAACAAGCT CACAGATACAGAGAACAAATTGGTGGTTTCCAGAAGCCAGGGGTGGTGGTGGTGGCGGCGATGGGGTGGTGGTGGTGGGG GGGGGGGGGTAAAGGGGGCCGAAGGGTACAAATTTATTA----------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------TT CTAGTTAT--AAAAGAAATAAGCCCTGGG-ATGTAATGCACAGCGTGGTCACTATAGTTAATAATACTGAGCTGCATATT TGAAAGTTGCT--GAGAATAGATCTTAAAACTCCTCATCACAAAAGAAAACATTTTTTTTTGTAATTATGTAGGATGACG G--TTGTTAAC---------TAGATTTATTGTGGTGATCATTTCA-----------------CAATATTTACAAATAC-- -CAAATTTAAAA--------------------AAAG-----------TTATGCTTA---TATCTA-GACATT-----CAT ATAACCTCTTCTAAAAAAGTGTACTGTCAAAAT >Pteropus_vampyrus TGCTTTCAAAATAAATGAATGGGACTACATCAAACTAAAAAGCTTCTGCTCAGCAAAAGAAACCTTCAACAAGGTAAAGA GACAACCATCCAAATGGGAGATTATATTTTCAAGCAATGCCTCTGATAAGGGCTTAATATTCAAAATATACAAAGAACTC ATACGACTCAATAACAACAAAAACAAACAATCCAATCAAAAAATGGGCAGAGGACCTGAACACACACTTTTCCCTAGAGG ACAGACAAATGGCCAACAAACATATGAAAAGATGCTCAACATTGCTCACTATTAGGGAAATGCAAATCAAAACCACAATG AGATACCATCTCACATCTGTTAGAATAGCTATAATCAACAGGACAAGTAATAACAAATGTTGGAGAGGATGCGAAGAAAA AGGAACCTTCATACACTGCTGGTGGGACTGCAAATTGGTACAGCCACTATGGAAAACAGTATGAAGGTTCCTCAAAAAAC TAAGAATTGATCTACCATATGATCCAGCAATCTCTCTACTGGGTATTTACCCCCAAAACTTGAAAACCCATATCCGAAAC CCATATTTGCACACTGATATTCATAGCAGCATTATTCAGTGGCCAGGACATGGAAGCAATCGAAGTGTCCTATGATAGAT GATTGGCTAAAGAAGCTGTAGTACATATGTACAATGGAATATTACTCAGCCATAAGAAGAGATAGAATACTGCCATTTGT GACAACATGGATGGACCTCAAGATGATCATGCTAAGTGAAATAAGCCAGACTGAAAAAGTTGAAAATCACACGATATCAC TTATATGTGGGATATAAACCTAAAAGCAACAAATGAACAGGACATACAGAGACTCGGGAATATGGACAATGGACTAGTGG TTACTAGAGGGTAGAGGGTGGAGGAGGTGGGAAGAGGTAGACAGGGTAAAGGTGGTCAATTATAGGGGGTTTAAGGGAGA GTGAAGTGGGTAAAGGGGATCAAATATATAGTAGCTGAAGGAAACTGGACTCTGGGTGGTAATCACACTGTAGGATATAT AGATGTCAAATTATAATGTACATCCTAAAATTATATAATCGTATTAACCAATGTTACCCCAATAAACTTAAAAAAATAAG AATGAAAAATAATAAAAAATAAAACTTCAAAATAAAATGTGTTGCTTTCTACAAATCATGGAGAA-A--CTAAGATGGAA GGACCCATTTAAGGTTG---TTTTTGAAA-----AACCAAACCAAAACAAAAC---------------AAAAACCAAACT CATAGATTCAGAGAACAAATTGGAGGTTGCCAGAGAAGAGGAGTTGTGGGGATGGGAGAAAT-GGGTG------------ -----------CAGTGGGTCAAAATATACAAAC----------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------TT CTAGTTAT--AAAA----TAAGTCCTGGGGATATAATGTACAGCATGGTCTCTGTAGTTAATTTTACTGAATCACATATT TGAAAGTTGCTAAGAGAGTAGATC-TAAAAATCCTCACCCCAAGAAAAA----ATTTCTTTGTAACTA------------ ---ATGTTAAT---------TATACTTACCGTGATGATTGTTTTG-----------------CAATATATACAAATAC-- -CAAATTAAAAAAGTTC------------------------------CTTTTTTTA---AATCTA-AACACCTGT--CAC ATAATCTCTTCT-GAAAAGTATGCCATCAAAGT >Condylura_cristata TGTATTCCACA--------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------AATCATAGAAGG-A--CTGAGTAGGAA GGACACATTTAAAATGA---TCATTTTTG--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------CATCTA-GATCCCTAT--TAT ATAACCTCTCCT-AAATAGCATCCTATTAAAGT >Sorex_araneus TGTTTTTG--A--------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------AAATTTGGAACT-A--GTGAACTTAAT AGATACAGCTAA---AG---TTATTTTTA--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------TATCTA-GACATATGT--CAT TTGACCTTTTCT-AAATAGTGTGCTGTCAAATT >Homo_sapiens TCTTTTCCACA--------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------AATCATGGAAAC-A--CTGAGCTGGAA GGACATGTTTAAGGTAA---TCA-TTTCA--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------TATCTG-GATACATTT--CAT ACAACCTCTTCT-AAATAGTGCTTTATCAAAGT Dog421_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------ACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGAT CTAATGTACAG-CATGGTGACTATAGTTAATAATACT---GTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAA GTGTTCTCA-CCACACACAAAAA-AATGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATT TCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTC--- ----AATAAAGCTGGAAAAA------------------------------------------------------------ --------- >Canis_familiaris TAAATGTATTACCTGG---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------TAGGAGGAAGTAT ATATAATACTGAAAACCTTGGT---GAGAAGTTATGC-----------TCAGA----------ATGTAAGTTCTAGGGAT GCAATATACAG-CATGGTGACTATAATCAACAATACT---GTATTGTATATCTGAAAGTTGCTAA-----TAGTTCTTAA AAGTTCTCATTTACAAGAAACAT---TTTTAACTCTGTGAGGTGACGA--ATGTGAACTAAGCTTTCTGTG---ATCATC TCACAATATATACATACATCAAGTCATCATGTTGTACACCTAAAATGGATGTAA-TGTTTTATGTCCATTATAAATC--- ----AATAAAACAGGAAAAAA---GAAAAGTTGTGC---A------------CTATTATAATTTCAGAGGCTTTCTTTAA GCAGTCCAC >Felis_catus TAAATGCATCACGTGG---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------TAGGAGGAAGGGC ACACAACACTGAAAAAT---GT---GAGAAGTTGTGC-----------CCAGACGTA--AGATAAATAAGTTCTGGGGAT GTAATATATAG-CATGGTGACTCTAGTTAACAATGCT---GTATTGTAGATTTGAAAGTTGCTAAGAGAATAGATCTTTG AAGTTCTCA-CTACAAGAAAAAAAAGTCTTAACTATGTGGGGTGATGA--ATGTTAACTAAGCTTATTACAGTGGTCATT TCACAATATATACACACACCAAATCATTTTGTTGTACACCTAAAATGAATGCAA-TGTTATATGTCAATTATAAATC--- ----AATAAAACAGGAAAAAA---GAAAAGTTATGC---A------------CTATTATAATTTCCAAAGC--------- --AGTCAAC >Manis_pentadactyla TAAATACAACACCTGG---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------TAGGAGGAAGAGG ATATAATACTGAAAAACT--GT---GAAAAGTTATGC-----------CCAATTATA------AGGTAAGTCCTGGGAAT GTAATGTACAG-CATGGTGACCA-AGTTAA---TACT---GTATTGCTGATTCGAAAGTTA-TAAGGGAGTACGTCTTAA AAGTTCTTG-CCCAAAGAAAAAA-AATTGTAAC--TGTGAGGTGATGG--ATGTTAGCTAGGCCTATTGTGGAAATGATT TCACAATATATACATCTATCAAATCATTATGCTAGATACCTAAAACTAATGCAA--------TAGTAATTATATCTC--- ----AATAAAAC--------------AAAGTTACGC---AATGGGTGTCAACTTATTATAATTTCAAAAGCATTACTTAA GCAGTGAAC >Sus_scrofa TAAATGTATCACTTGTGGAGTTCCCGCTGTGGCACAATGGGACTGACAGTGTCTCTTTAGTGCCAGGATTCGTTTGATTC CCTTGCCCAGCACAGTGTGTGATTAAGGACTGGGTGTTGCTGCAGGTATGGTGTAGGTGCAGCTTGGGCTTGGATTGGAT CCCTAGCCTGGGAACTCCATATGCCTTGGGGCAGCAGCAAAAGAAAAAAAAAAAATGTATCACTTGGTAGGAAGAAGTGG CTACAACACTGAAGAACCTTGT---GAAAAGTTATGC-----------CCAGTTGTA------AGATAGTTTCTGGGGAT GTAACATACAG-TATGGGGACAAGGGTTGACCATACA---GTATTGCATATTTGAAG----------------------- --GTTCTCA-ACACAAGAAAAAAAAAATGTAACTATGTGAGGTGATAG--ATATTAACTAAGCTTAGAGTGGTAACTATT TAGCAATATATGCATATATCAAATCATTATGTTGTAAACCTAAAACTAATGCTA-TGCTATATGTCAATTATATCTC--- ----AATAAGACAGGAAAAAA---GAAAAGTTATGC---AGTGGGTGTCTAGA----ATAATTTCAGAAGCATTCTTTAA GCAGTCAAT >Bos_taurus TAAATGTATCACTTGG---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------AAGGAAGAAGTGG ATACACTTCTGTAACA----------------------------------------------CAAGGAAGTTCTGGGTAT ATAATGTACAGCCATAGGGACTATAGTTATAGTTATT--AGTATTGCACATTTGAAAGTTGCTTTGGG--TAGATCTTAA AAGTTCTTA-ACACAAGAAGTAA--ATGATAACTACGTGAGGTGGTTG--GTATACAGTAAACTTATTGCAGTG----TT TTGCAATATATACAAATATCAAATCATCATTTTGTACACCTAAAACAAATGCTC-TGTTGTATGTTAATTATATCTC--- ----AGTAAGACAAGAAAAAA---GAAAAGCTATGC---AATGGGTAT----TTATTATAAATTCAAAAGCATTCTTTAA GTAGTCAAT >Myotis_myotis TACATGCATCACACGG---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------TAGGGGGGAGTGG ATACAACACTGCAAAACGTCCT---GA-AAGTTATGC-----------CCAGCTATA--AGGTAAATAACCATTGAGGAT GTAGTGTACAG-CATGGTGACTAGAGTTAACGATACT---GTATTGTATATTTGAAAGTTGCTGAGAG---AGATCTTAA GAGTTTTCA-CTACAAGAAAAAA--TGTGCAACTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNN >Rhinolophus_ferrumequinum TAAACCCATCACCGGG---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------TAGAAGGAAGTGG ATACAACCGTGCAAAACT--GT---GAAAAGTTATGC-----------CCAGTTACA--AGATAAGTAAGGTCTGGGGAT GTCATATACAG-CATGGTGACTGTAATTCACAATAATACTGCATTGTATACGTGAAAGTTGCTAAGAG---AGACCTTAA AAGTTCTCA-TCACCAGAAAAAA--ATTGTAAGTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNN >Condylura_cristata TAAATGTGTTACCTGG---------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------AGGGCGAAGTTG ATACAACATTGAAAAATTG-GT---GATAGGT--TGC-----------CCAGTTATA--AAATAAATAAGTTCTAGAGGC GGAAGGTACTG-CATGGAGACTTAGGTTAACAGTTC----ACATTGTGTATTTGAAAATTACTAGGAGAGTAGAT-TTAA AAGCTCTTA-TCACATGAAAAAA-ACTTGTAACT----GGCATGATGG---ACTGAGCTAAGCTAATGGTAGGAATAATT TTGCAACACACACTTATCTCAAATTG------TGCACATCTAAAGCCAATGAAA-TGTTACATGTCAATAATATCTCATA TTTCAGTAAGATAGGAAA------AAAAAGTTATGT---AGTAGGTATCTATGTA---------CAAAAGCATTCCTTAA CTAGTCACC >Uropsilus_gracilis TAAGAGCAACACCCAG---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------TAGGAAGAAGTGA ACACAACACAGAAAAATTT-AT---GAGAAGT--TGT-----------TCAGTTATA--AAAGAAA----TTCT-GAGAT GTAATGTGTTG-CATGGTGACTTCAGCTAACAGTACT-CT--CTTGTGTATTTGAAAGTCGCTAAAAGTG---------- -------TG-TCAGAT-AAAAAA-AGTTGTAACTAC--AAGATGATGG---ACTGAGCTAGTCTTATTATAGTAACAATT TT--AAAACATATTTATTTAAAATTGTTACGGTGCATATCTAAAGCCAATGCAG-TGTTACATATCAATGATATCTCA-A TAAAAGGGAAAAAGAAAA------AAAAATCCGTAT---AGTGGGTATCTTTATTA--TAAATTCAAAAGCATCCCTTAG GTGATTAAC >Equus_caballus CA-ATGCATCTGCCGG---------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------AGGAGGAAGTGG ACACAACACTGAAACCGT--GT---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------G-AAAGTTATGC---AGTGGGTGCCTACTTATTAGAA-TTCAGAAGCCTTGTTTAA GCAGTCAAC >Ceratotherium_simum TG-ATGCATCTCATGG---------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------AGGAGGAAGTG- ACACAATGCTGAAAACCAGGGT---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------GAAAAGTTATGC---CATGGGTGTCTATTTATTAGAATTTCAAAAGCATTCTTTAA GCAGTCAAC >Homo_sapiens TAAATGCATCACTTGA---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------TAGGAAGAAGTGG ATACATCACTGAAAAAGCATCT---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------GAAAAGTCATGC---AACGGGTCT----CTATTTTGGTCTCAAAAGCATTTTTTAA GCAGTTCAC Dog422_LINE >L1MA9_3END ------------------------------------------------------------------------TTAGAATG GCTATTATCAAAAA-----------------GACAGAAGATAACAAGTG---------TTGGCGAGGATGTGGAGAAAAG GGAACCCTTGTACACTGTTGGTGGGAATGTAAATTGGTACAGCCATTATGGAAAACAGTATGGAGGTTCC-TCAAAAAAT TAAAAATAGAACTACCATATGATCCAGCAATCCCACTTCTGGGTATATATCCAAAGGAAATGAAATCAGTATCTCGAAGA GATATCTGCACTCCCATGTTCATTGCAGCATTATTCACAATAGCCAAGATATG----GAANCAACCTAAGTGTCCATC-G ACGGATGA----ATGGATAAAGAAAATGTGGTATA--------------TATACAC----------AATGG-AATATTAT TCAGCCTTAAAAAAGAAGGAAATCCTGCCATTTGTGACAACATGGATGAACCTGGAGGACATTATGCTAAGTGAAATAAG CCAGGCACAG--AAAGACAAATACTGCATGATCTCACTTATATGT-GGAATCTAAAAAAGTCAAACTCATAGAAGCAGAG AGTAGAATGGTGGTTGCCAGGGGCT-------GGGGGGTGGGG-----GAAATGGGGAGATGTTGGTCAAAGGGTACAAA GTTTCAGTTAT------GCAGGATGAATAAGTTCTGGAG-ATCTAATGTACAGCATGGTGACTATAGTTAATAATACTGT ATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTC-----------------------------ACCAC ACACAAAAAAA-----TGGTAACTATGTG--------------------------------------------------- -----------------AGGTGAT-------------------------------------------------------- ---------------------------------GGATATGT----------------TAATTAGCTTGATTGTGGTAATC ATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTT------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------TATTTGTCAATTATACCTCAATAAA-----GCTGGAAAAA----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------- >Canis_familiaris ATAAATCAGAGGTACACAGAGGTGAGATATCCAAAA-GTAGGACTCATTTA---AAGAAAAGCC-ATAA----------- -ATATCATCAGAAA-----------------GA--------GCTAAGTA---------CTGGCAAGTA------------ GCAACCCTCATGCACCGTGGGAAGGGATGGAAACTGGTAGAGCCATAATAGAAAACAGTATGGAGGTTCC-TCAAAAAAT CAAAAGTAAAACTGCCATGTGATCTAAAAATCCCACTTCTGGGTATAGATCCAAAGGAAATGAAAGTAAGATTTCTAAGA GATATCTGTATTCTCATCTTCATTGTAGCA-TATTCATAATAGCCAAGATATGGAGAAAAAAAATCTCAGTGTCCATC-A GTGGCTGGCTGGCTGGATAAAGATGTTGTGGTAAA--------------TATATAC----------AATGG-AGTATTAC ACAGCCATTAGAAAGAAGGAAATCTTGCCATTTGCTA-AACATAGATGGACCTTAAGGGCATTATAGTAAGTGAAATAAG TCAGATAGAG--AAAGACAAA------ATGATGTCACTCATAAGG-GGAATGTGGAAAAGCCAAACTCATAGAAAC---- AGTAAAATGGTAGTTGCCAGAAGCT-------GTGGGGTTGGG-----GCAATGGGGAAATGTTGGTCAAAATGTACAAA CTTCCAGCTAT-----------------AAGTTGTGAGA-ACCTAACATACAGCATAGTGATTAGAGTCAACAGTGCTGT ATTACATGTGTGAAAGTTGCTAAGAGAGTAAATCTTAAATGTTCAC-----------------------------AACAC --AAAAAGAAA-----TGATAATTATGGG--------------------------------------------------- -----------------ATGTGAT-------------------------------------------------------- ---------------------------------GGAGGTGT----------------TAGCTAATGCTAACATGGTAATC CTTTCGTAATACATAAGGGTAGCAAATCAACACAATGCACACCATAAGC--ATATAATGT-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------AATATGTCAATTATATCTCAATAAA-----CCTGGAAAAAA---------- -----TGTTTTTATTTTTTACCCTCAAATATAAAGGA------------------------------------------- --CAAAGA----------AAAAAAAGAGTAAAA---TTCCAGAGGAAATAATTT---AGTCTTAGGAAGTGGTT >Felis_catus NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNN----------- -NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATAACAAGTA---------CCAACAATTA------------ -GAAACCGCATGCACTGTTGGTAGCAATGTAAACAGGT---------------------ATGGGGGTTCC-TCAAAAAAT TAAAAGTAGAACTACCATATGATCCAACATTCCCA-TTCTGGGTATAGATCCAAAGGACACGAAAGCAGGATTTCTAAGA GATATCTACATTCTTATGTTCATTGCAACATTATTCGTAATAGCCAGGATATG--GGAAAAAAATCTTAATGTCCATC-A ATGGATAGAGGCATGGATAAAGATGATGTGGTACA--------------TATATAC----------AATGG-AATATTAT TTAGCCATGAGAGAGAAGGAACTCTTGCCATTTGCAATAACACAGATGGATCTTGAGGGCATTATGGTAAGTGAAATAAG TCAGATAGAG--AAAGACAAATAGTGTATGATATCACTCACAAGT-GGAATGTGGAAAAGCCTAACTCATAGAAAC--AG AGTAGAATGGTAGCTGCCAGAGGCTGTAT---GTAGGTTTGGG-----GAAAT-GGGAAATGTTTGTCAAAGTGTACAAA CTTCCAGTTGT-----------------AAGTTGTGGGG-ATCTAATGTGCTGCATGGTGATTATAGTTAACAATACCAT ATTACATATTTGCAAGTTGCTAAGACAGTAAATCTTAAATGTTCTCA----------------------------ACCAA AAAAGAAACAA-----TGACAGG--------------------------------------------------------- -----------------ATGTGTT-------------------------------------------------------- ---------------------------------GGAGGTGT----------------TAGCTAACTCTAAGACGGTAATC ATTTTCTAATACTCAAGTGTAGCAAATCAGCACAATGTACAGCTTAAGC--ACACAATGT-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------AATAGGTCCATTATATCTCAATAAA-----CCTGCAAAAAA---------- -----AGTCTGTATTTTCTACTCTCAAAAAAAAAAAAAAAACAGAGAGAGAGAGAGAGAGAGAAAGGA------------ --AAAAAAAGTCAAT---AAAAAAGGAGTAAAA---TTCCAGAGAAAATAATTT---AGTCTTAGAAAATGGTT >Manis_javanica AGAACTCAAGGATACACAGAGGTGAGATA---------------TCATCAG---AAGACTATCA-CCAAT---------- -GTATCAACAAAAA-----------------GA-----GATAACAAGTG---------TTGGTGAGGATGTGGAGAAAAG GCAATCCTTGTACATGATGGT-GGGAATGTAAATTGGTGCAGCCACTGTGGTAAACAGCAGGGAGGTTCC-TCAGAAACT TAAAAGTAGAACTAC---ATGATCCAGCAATTCCTCTTCTGGGTACAGATCCAAAGGAAATGTGAACAGGGTCTCAAAGA GATACCTGTTTTCCCATGATCATT-----C-CATTTCCAATAACCAAAACACGG----AAAAAATCTAAATATCAGTC-A ATGGATGG-----TAGATAAAGAAGATGTGGTATA--------------AATACAC----------AATGG-AGTATCAT TCAGCCATGAGAAAGAAGGAAATCTTTCCATTTGT---GACATTAGCTGACCTTGAGGGCACTGTGCTAA--AATGTAAG TCAGACAAAGATAAATACTGA------ATGATATCACTTAGATGT-GG-ATCTTGAAAATTTGAACTCATAGAAACAGAA AGTAGAATAGTGATT-CCAGGGACTGGGTAGGGGGAGGGAGGG-----GCATTGTGGAGATGTTGGTCAAAGAGTACAAA CTT-CAGTTGT--------AACATGAATATGTTCTGGCA-ATCTAATGTACAGCATGGT-ATTATAGGTAACAATACTGT ATTATATACTTCAATGTTGCTAAGACAGTAAATCTTAAATGTTCTC-----------------------------AACAC --AAAAAAGAAAAGGTTAGTAATTATGTG--------------------------------------------------- -----------------ACCTGGC-------------------------------------------------------- ---------------------------------AGAGGTGT----------------TA-CCAATGCTATGGTAGCAATC AATTTACACTACACAGGTATATCAAATCAACACAGTGTACACCTTAAAC--ACACAATGT-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------TATATGCCAATGATATTTCAAGAAAAAAACACTGGGGAAAA---------- CTAAAAATGTCTATTTCTATACCTC------------------------------------------------------- --CACAAA----------ATAAAAGGGGTAAAA---TTCTAGAGAAAATAATTTTTCTGCTCTGGGAAGTGAAA >Sus_scrofa TAAAACCAGGCATACAC-----TGTAATACTCAAAAAGCATGACTCATTTT---AGGAAAAGCC-AAAA----------- -GTATCATCAAAAA--------------------ACAAGATAACAAGTG---------TTT-TAAGCATGTGGA-AAAAG GGCGCCCTTGTGCACTATTG---TGAAAGTGAATTGGTGCAGCCACTGTGAAGAACAGCCTGGAGGTCTC-TCACAAAGT TAATAGTAATACTACCATATGATCCAGCAATCCTACTTCTGCATATAGATCCAAAGGAAATGAAAACAGGATCTTGAAGA GACATCTGATTGCCCATGCTTATTGCTGCATTCTTCACAATAGCCAAGATACG----TAAATAACCTACGTGTC-----A GTGGATAG----------AAGAATGATGTGCTGTA--------------CATCGGC----------AATGG-AATATTAT TCAGCCAAGAGAAAGAAGGAAATCCTGCCATTTTC---AACAGAGATGGACCTTGAGGGAACTGTGCT-----AAATAAG TCAGACAGA---AAAGACAAACACTGTATGATATCACTCATAGGT-GGAATCTGGAAAAGTGGAATTCACAGAAATAGAG GAAAGAATGATGGTTGCCAGGGGCT-------GGAGTCAGGGG------AAAT-GGGAGATATTGGTTAGAGGTTATAAA CATCCAGTTATAAGACAAATAGATGAATAAATTCTGGGGAATCTAACATACAGCATGGTGATTATAGCTAAGAACACTGC ACCATATACCTGAACGTTGTTAAGGGA----------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------CATAAGGGTATCAGTTCAACACAATTCGCACCTTATACTTACACAATGT-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------CACAGGTCAATCAGATCTCAATAAA-----CCTGGGAAAA---------TT TTAAATGTTCTTATTTTCTACCTCCAAGAAAAAAGAGAGGAGAGGGGAGGAAAAGAAAGGGAAAGAAAAGGGGAAAGAG- --AAAGAAAACCAA----AAAAAGAGAGTAATA---TTCCACAGAAAATTATTT---ACTCTTGGGCTGTGGTT >Bos_taurus AAAACTCAGGGCTATACAGTGGTGAGATACTCAAAAAGCATG-----TTTT---AAGAAAAGTC-AAAT----------- -GTACCATGGGAAAAAAAAAATCAAAGTATCAAAAAAAGATAACAAGTG---------CTCACAAGCAAGTGGAGGAAAG GGAATCCTTGTGCACTGCTGATGGGAATGTAAACTGGTGCAGCCACTATGGAAAACAGCATGGAGGTTTCTTGAAAAAAT TAAAAACAGAACTAAAATATGACCTAGCGATTTCCCTTCTGGGTTTAGATCCAAAGGAAATAAAAACAGGATCTAAAACA GCTGTCTTCTCTCCAATGTTCACTGCAGCATTATTTACAA---------TGTA----GAAATGATCCAAGTGCC-----A ATGGATAG----AAGGATAAAGA---TGTGGTATATAAATAGATATACGTATATATGTATATATACAATGA-AATATTAT TCCGCCAGGAAAAATAAGGAAATCCTGTCACTT--AACAACATGGGTGAAC-----------TGTGCTAAGTG------- --AGACAGAA--AAAGACAAATACTGTACGATATCACTTATGTGTGGGGACCCGGAAAAGCCAAGTTCAGAGAAAC--AG AGCAGAATGGTGGTTGCCAGAGGCT-------AGAGGTAGGAA------AAATGGGGAGATGCTGGTGAAAGGATATAAA CTTCCAGTTAT--------AAGATGAATGAGTTTTGGGG-GTTTAATATACAACACAGTGATTATAGTTGATTATACTTT ATTATATACTAGAAAGT---TAGGAGAGTAGATCTTAAATACTACCATGGTAATCATCTTGCAGTATGTAGCTGTATCAA ATCAACACAAG-----GCACACCTGTGTGCATGAGTGCTCAGTTGTGTCTATCTCTTTGGGACCCCATGGACCGTAGCCC ACCAGGCTCCTCTGTCCATGGGATTTCCCAGACAAGAATACTGAAGTGGGTTGCCATTCCCTTCTTCAGGGGATCTTTCT GACCCAGGAACTGAACCCGTGTCTACTGCATTGGCAGGTGTATTCTTTACCACCGAGCCACCTGGGAAATCCTTGTAATC ATTTTGCAATATGTAATTGTATCAAATCAACACAATGTACACCTTAAAATTATGTAATGTCATATGTCAATTACTGGAGA AGGCAACGGCAATCCACGCCAGTACTCTTGCCTGGAAAATTCCATGGACGGAGGAGCCTGGTAGGCTATAGTCCATAGGG TCGCTAAGAGTCGGACACGACTGAGTGACTTCACTTTCACTTTTCACTTTCATGCATTGCAGAAGGAAATGGCAACCCAC TCCAGTGTTCTTGCCTGGAGAATCCCAGGGACAGGGGAGCCTGGTGGGCTGCCATCTATGGGGTCGCACAGAGTCGGACA CGACTGAATTGACTTAGCAGCAGCAGCAGCATATGTCAATTATATTTCAATAAA-----CTAGGGAAAAA--------TT TTAAATGTTCTTATTTTCTACTCAGAAAAGGAA----------------------------------------------- --AGGAGAAGTGAAA---AGAGAAAGGGAAAGAAAATTCCAGAGAAAATTATTT---AGTCTTAGACCATGGTT >Equus_caballus AAAAATCAGGAACACACAGAGGTGAGATACCCAAAAAGTATAACTCATTTT---CAGAAAACCC-AAAC----------- -GCATCATCAAAAA-----------------GACAAGAGAG---AAATG---------CCGGCGAGCGTGTGGAGAAAAG GGAAGACTTGTACACTGCCGGTGGGAATGTAAATTGGTGCGGCCATTATGGAAAACAGTATGGAGGTTTC-TCAAAAAAT TAAAAATGGAACTGCCCTATGATCCAGTAATCCCACTTCTGCGCATAGATCCAAGGGAAATGAAATCAGGATCTCGAAGA GACATCTGCTCTCCTACATTCATTACAGCCTTAAACACAATAGCCAAGATATG----GAAACGACCAAAGAGTCCATCTA ACGGAGGG----ATGGAAAAAGA---TGTGGTGTA--------------CATATGTAC--------AATGG-AATATTAT TCATCCATGAGAAAGAAGGAATGCCTGCCATTTGCTACAACAAGGATGGACCTTCAGGGCCTTGTGCTAAGTGAAATAAT TCAGAGAGAG--AAAGACAAGTACTCCCTGATCTCACCTATATAT-GGAACCTATAAAAGCTGAACTCAGAGAAACGGAG AGTAGAGTGGTGGTTACCAGAGGAT-------GGGGTGGAGGGGGTTGGGAATGGGGAGATGCTGGTCAATG-GTACAAA CTTCCAGTTAT--------AAGATTAACAAGTTCTGGGG-ATCTAATGAACAGCATGGTGACTATAGCTAATAATACTGT ATTATATACTTGAAAGTTGATAAGAGACCAGATCTTAAATGTTCTC-----------------------------ACCAC A-AAAAAGAAA-----TGGCCATTATGTG--------------------------------------------------- -----------------TTGGGAT-------------------------------------------------------- ---------------------------------GGAGGCGC----------------CAGCCAGAGCTATGGTGGCAATC CTTTTGCAACATGTAAGTGTATCAAATCAACTCAATGGACATCTTAAACTTACACAACGC-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------TATATGTCAATTATATCTCAATAGA-----CCTGAGAAAAAA-------AT TAGAATGTCTTTATTTTTTACTCTCAAAAAAAGAAA-------------------------------------------- --AGCAAAAGACAA----AAGAAGGGGGTAAAA---TTCAGGAGAAAATAATTT---AGTCTTGGGCAATGGTT >Ceratotherium_simum AAAAATCAGGGATATACAGAGGTGAGATACCCAAAAAACATGACTCATTTT---AAGAAAAGCC-AAAA----------- -GTATCATCAAAAA-----------------GACAAGAGAT---AAATG---------CTGGCGAGCGTGTGGAGAACGG GGAAGCCTTGTACACTGTTGGTGGGAATGTAAACTGGTACAGCCACTATGGAAAACAGTACGGAGGTTCC-TCAAAAAAT TAAAAATGGAACTACCATATGATCCAGCAATCCCACTTCTGAGCATAGATCCAAGGGAAATTAAATCAGGATCTCGAAGA GAT---TGCTCTCCTATGTTCACTACAGCATGAAACACAATAGCCAAGATATG----GAAACAACCTAAGCGTCCATC-A ACGGATGG----ATGGATAAAGAAGATGTGGTATA--------------TGTATGCAC--------AATGGAAATATTAT TCATCCATGAGAAAGAAGGAATTCCTGCCATTTGTGACAACAAGGATGGACCTTGAGGGCATTTTGCTAAGTGAAATA-- --AGAGAGAG--AAAGACAAGTACTGTATGATCTCACTTATGTGT-GGAATTGAAAAAAGCTGAACTCAGAGAAAC---- -ATAGAGTGGTGGTTACCAGGTGCT-------GGAGGGAGAGGGTGCAGAAATGGGGAGATGTTGGGCAAAGGGTACAAA CTCCCAGTTAT--------AAGATTAACAAGTTCTGGGG-ATTTAATGTACAGGATGGTGACTATAGTTAACAATACCGT ATTATGTATTTGAAAGTTGCTAAGAGAGCAGATCTTAAATGTTCTC-----------------------------ACCAC G-AAAAAGAAA-----TGGTAATTATGTG--------------------------------------------------- -----------------ACGGGAT-------------------------------------------------------- ---------------------------------GGAGGTGT----------------CAGCTAGAGCTGTGGTGGTAATC GCTTTGCAGTAC--------ATCAAATCAACACAATGTACACCTTAAACTTACACAATGT-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------TATATGTCAATTATATCTCAACAGA-----CTTGGGGAAAAA-------AC TGAAATGTCTTTATTTTTTATCCTCACCAAAAAAAAAAAAAAAAAACAGAAA---------------------------- --AGAAAAAGCTAA----AAGAAGGAGGTAAAA---TTCAGGAGAAATTAACTT---AGTCTTGGGCAATGGTT >Myotis_myotis AGAAATCAGGAAGACAC--AGGTAAAATATCCAAAATGTATGACTCATTTT---AAGAAAAGCCACAAA----------- -GTATCACTGAAAA-----------------GACGAGAGATAAATAGCAAAGGTTCCCTTTCCAAGAGTGTGGAGGAAAG GGAATCCTTGTGCATTGTTAGTGGAAATGTAAACTGGTGCAGCCACTATGGAAAACAGTATGGAGGTTCCTTCAAAAAAT CAAAAGTAGAACTACCACATGATCCAGCAATTCCGCTTCTGGGTATAGATTAAAAGGAAATGAAAATAGGATCTCAAAGA GATATCTGCACTCCCATGTTCATTGCAGCATTATTCACAATAGCCAAGATATG----GAAAAAGTTTAAGTGTCCGTC-A GTGGATGG----ATGGATACAGA---TGTTTTACA--------------CACACACCT--------ACTGA-AATATTAT TCAGCCCCAAGAAAGAAGGAAATCTTGTCATTTGCAACAACATGGATGGACCTCAAGGGCATTGTGTTAAGTGAAATAAG TCAGACAGAG--AAAGCCAAATACTGTAAGATCTCACTTATATGA-GGAATTCAGAAAAGCTGAACTCAGATAG----AG AGTGCAATGGTGACTGCCAAGGGCT-------GGCGGGTTGAG-----TAAATGGTGAGATGATGGTCAAAGGGTACATA CTTCCAGTCAT-----------------AAGTTCTAGGA-ATCCAATGCATAACATGGTGATTATAGTTAGCAATATTGT ATTATACGCTTGAAAACTGCCAAGAGAGTAAATCTTAAATGTTCTC-----------------------------AACAG A-AAAAAGAAA-----TGGCAATTATGTG--------------------------------------------------- -----------------ACATGAT-------------------------------------------------------- ---------------------------------GGAGGTGT----------------CAGCTAACACAATGGTAGTAATC ACTTTGCAATATGTAAGGGTATCAAATCAACACAATTTGCACCTTAAAC--ACACAATGT-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------TACATATCAATTATATCTCAGTAAA-----CCTGGGGGGAGGGGAGCCGGT TAAAATGTCTGTATTTTCTATACAAAAAAAAAAAAAAAAG---------------------------------------- --CAAGAAAGGCCA----AAAGAAGAGGCAAAA---TTCCAGAGAAAATAATTT---AGTCTTGGGAAGTGGTT >Rousettus_aegyptiacus AAAACTCAGGAATACACGGAGGTGAGATATCCAAAAAGTATGACTCATTTT---AAGAAAAGCCTAAAA----------- -GTATCATTGAAAA-----------------GACAAGTCATAGTAAGTG---------TTGGCAAGCGTGTGGAGAAAAG AGCACCTTTGAGCACTGCTGATGGGAATGTAAATT-----AGCCACTATGGAAAACGGTATGGCATTTCCTTCAAAATAT TATAAGTAGAACTACCATATGATCCAGCAATCCCACTTCTGGGTATAGATTCAAAAACAATGAAAACAGGATCTTGAAGA GATATCTGTTCTCCCATGTTCACTGCAGCGTTATTCACAATAGCCGAGTTATG----AAAAAAATCTAAGTGTCCGTC-A GTGGATCA----ATGTATGAAGA----GTGGTATA--------------CGCACATGCACACATACAATGA-AATATTAT TCAGTCATGAGAAAGAAGGAAATTTTGCCATTTGCAACAACATGGATGGACGTCAAGGGCATTGTGCTAAGTGAAATAAG TCAG----AG--TAAGACAAATACTCTATGATATCACTTACATGT-GGAATCTGGAAAAGCCAAACTCAGAGAG----AG AGTAGAACAGTGGTTGCCAGGGGCT---------GGGATAGGG-----GAAATGGAGAGGTTCTGGTCAAAA-------- ------------------------------------GGG-ATCTAATGTACAACATAGTGATTATAGTTAACGACGCTGT ATTATATACTTAAAAGTCACT--GGGAATAAATCTGAAATGTTCCC-----------------------------AACAC A-AAAAAGAAA-----TGGTAATTATGTG--------------------------------------------------- -----------------ATGTGAT-------------------------------------------------------- ---------------------------------AGAGGTGT-------------------------------------TC ATTTTGCAACATGTAAGTGTATTAAATCAATACAACTTGCACCTTAAAC--ACACAATGT-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------TCTATATCAGTTATACCTCAATAAC-----CCCAGAAAAAA---------- --AAATGTCATTGTTTTCTACCCTAAAATAAAAATA-------------------------------------------- --GAATAAAGCA------AAAAAAAGGGCAAAA---TTCTAGAGAAAATAATTT---AGTTTTAGGAAGCCGTT >Condylura_cristata AAAAACCTGGGCTACTCAGAGGTAAG-TGCCCAAAATGTATGACATGTTTT----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --AAAGAA-GCCAAA---AAGAATAGGGTCAAA---TTCCAGAGAAAATAACAA---A---TTTGACAGAGATT >Sorex_araneus GAAAATTAGGGATACACAGAAGTAAGTGACC-----T-CAAGACTCAT-TT----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --TAAGATAAC-TC----AAAGGAGGGGTAAAG---CACCACA-AAAACAATTC---TGTCTTGAGCAGTGGTT >Homo_sapiens AAAAATCAGGAGTATGCAAAAGTGAGACACCCAAAAT-TATGACTTC--TT----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --AAGAAAAGC-AA----AAATCAGGGGTAAAA---TTCCAGAGAAAATGGCTG---AGTCTTGGCCAGTGGTT Dog423_LINE >L1MB1_3END -------------------------------------------------------------------------------- --------GTGGAAACAACCTAAATGTCCATCGACGGATGAATG------------------------GATAAAGAAAAT GTGGTATAT-ACATACAATGGAATATTATTCAGCCTTA-AAAAAGA-AGGAAATCCTGCCATATGCGAC----------- --AACATGGATGAACCTTGAGGACATT-ATGCTAAGTGAAATAAGCCAGTCACAGAAGGACAAATACTGCATGATTC--- -CACTTATATGAGGTATCTAAAATAGTCAAACTCATAGAAGCAGAGAGTAGAATGGTGGTTGCCAGGGGCT--------G GGGGGAGGGGGAAATGGGGAGTTGCTGTTCAATGGGTATAAAGTTTCAGTTATGCAAGATGAATAAGTTCTAGAGATCTG CTGTACAACATTGTGCCTATAGTTAACAATACTGTATT--GTACACTTA------AAAATTTGTTAAGAGGGTAGA---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------TCTCATGTTAAGTGTTCTT----------------------------------- --------------------------------------------------ACCACAATAAAAA----------------- -------------------------------------------------------------------------------- - >Canis_familiaris CTGAATAAAGTTCTAGCAAGTTCCTTTCACTTCCAGTCCCCATCCTGATTTTCCCCTTGCATAGTCAAAA---AGGCCAT TTCAA-------------CCTAAATGTCCACAGA-GGATGGACA------------------------GATTAAGAAAAT GTGGTAGAT-GCACACAGTGG---ATTATTCGGCCTTA-GAAAGGA-GGA-----CATCCATATGTGAC----------- --AGCTCGGCTGAACCTTGAGTACATT-TCACTAAATGAAATAAGCCAATTACA-AAGGACGCATACTGCATGATAC--- -CACTTATCTGAGATCTGTGAAATAGCCAAAGACATAGAGGCAGAGGGTAGAATAGTGGTTGCAACAGGCT--------- GGGAAAGGGGAAAGTAGGGAGTTACTATTCAACTAGTATA-AGTTTTAGTTATGAAAGATGACGAAGCTCTAGAGACCCG --------CATTGTGCCTGTGGTTAACAGTACTGTATC--ATACACTCT------AGAATTTGTTAAACGGGTAGA---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------TCTTATGTTAAGTGTTCCT----------------------------------- --------------------------------------------------GCCAGAGTGAAAAGAAGTGGCGATGGTGGG GAGGGAG---AGGCTACTTCAA---AGACCAACTTAA-TTTTTAGAAAGCCAGATATAAATAAATATTTCACTGT-CCAG G >Felis_catus CTGAATAAAGCACTAGCAAACGCCTTTCACCTCCAGTCCCCATCCTGAATTTCTCCTTGCATAGT-----------CCAT TTCAA-------------ACTGAATGTCCACTGATGGATGGATGGAGGGAGGGAGGGGTGGATAGACAGATAAAGACAAT ATGGTACATAACACGCAATGGAATATTTTTCAGCCTTA-ATGAGGA-AGGACATGCTTCCATATGTGGC----------- --AGGTTGGCCGAACTTTGAGGACATT-ACGCTAAGTGAAATAAGCCAACCACA-AAGGACAAATGCTTCATGATAC--- -TACTTATCTGAGATCTATAAAATAGCCAAACACACTGAAGCAGAGGGTAGAATGGTGGTCAC----------------- -----AAGGGGAAAGTGGGAATTGCTATTCAG-TGGTATA-AGTTCTAGTTATGCAAGGTGACTAGGTTCTAGAG-CCTG --------CATTGTGACGATAATTAAAAGTACTGTATT--ATACACTCT------AGAACTTGTTAAGAAGGTAGA---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------TCTTACATTAAGTGTTCTT----------------------------------- --------------------------------------------------GCCACAGTAAAAAGAAGTGGGGGTGGGGA- ----------AGGCTGTTTCAA---AGACCAACTTAA-TTTCTAGGAAGCCAGAT----ATAGATAATTCATTGT-CCAA G >Manis_pentadactyla CCGAGCAAAACAGAAATAAATTCCTTTCA----GAGTGTCCTTCCTGACTTTCTCCTTACATAATAAGAA---AGGCCAG TTCAA-------------CCTAAATGTTCATTAATAGATGAATG------------------------GCTAAAGAAAAT GTGACATAT-ACATAAAGTGGAATATTTTTCAGCCTT----AAAAA-ATGATATCCTTCCATATACGAC----------- --AGTTTGGCTAAACCTTGTGTGCATT-ATACTAAGTGAAATAAGCCATTCACAGAAGGAAAAATACTGCATGATACAAA ATTTGAATATGA----TATGAAATAGTCAAGCCCATAGAAGCAGAAAGTATAATGGTGGTTGCCAGGGGCTAGGGAAAGA GGGAAAGAGGGAAATGGGGAGTTGCTATTCAGCTGGTAAACAGTTTCACTTATGCAAAATGATTAAGTTTTAGAGATCTG --------CACTATACCTATAGTAAACAGGACTGCATT--GTATTCTCT------ACAGTTTGTTAAGAAGGTAGA---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------CCTCATGTTAAGTGTTCTT----------------------------------- --------------------------------------------------AACACAATTAAAAAAAGATGAGAAAA---- ----------AGGCCATTTCAA---GGACCAACTTGA-TTTTCAGGAAGCCA-AT----GTAAATATTTCATTGT-CCAA G >Sus_scrofa CTGAATAAAATGCCAGCAAATTGCTTTTACCACCAGTCTCCATTCTGACTCTCTTCTTGCATGTTAAGAA---AGGCCAT TTCAA-------------CCTAATTATCCATCAATGGATAAATG------------------------GATAAAG----T GTGGTATTT-ACATACAATGGAATATTATTCAGACCTG-AAGAAGA-AGGCTATCCTTCCATATGTGAC----------- --AG----------CCTTGATGATATTAATGCTACATGAAATAAGCCAGTCACAGAAAGACACATACTACAGGATAA--- CCACTAATATGAGGTCCATAAAATAGTCACCTACATAGAAACAGAGAGTAGAATGGAGCTTGCCA-GGGTT--------- ----GGGAGGGGAATGGGAAAATGCTGTTCAACTGGGATAAAATTT--GTTATGCAAGAAGATTAAGTCCTGGAGACCTG --------CATTGTGCCTACAGTTAATGATACTATACTTTATAC-TTTT------AAAATTTGTTGAGAAGGTAGA---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------TCTTACCTT--GTGTTCTT----------------------------------- --------------------------------------------------ACCTCAATAAAAAAAATTAGAAATGG---- ----------AGACTGATTTAA---GGACTAACTTAA-ATTTTAGGACGTTACAT----AAAAATATTGCATTGTCCCAG G >Bos_taurus CTGAATAAAGCACCAGCAAATTCCTTCTACCTCTAGTTGGCATCCTGACTGTCTTCTTGCATGTTAAGAA---AGGCTAT TTCAA-------------CATAAGTATCTATTGACGCATGAATG------------------------GATAAACAAAAT GTGCTATAT-ACACGTGGTGGAATATTATATAGTCTTG-AAAAAGA-AGTCTGTCCTTGTTTCTATAAC----------- --AACTTGGCTGAACCTTGAGGACATT-ATGCTGCATGAAATAAACCAAACACAGAGAGGCAAATACTGCAGGATAT--- -TGCTTATATGAGGTCCATAAAGTAGTCAAACACATATAAGCAGAGAGTAGAATGGTGGTTGCCAGAGGTC--------- -GGGGAAGGGGAAATGGGGAGATGCTATTTAATTGGTATTAAGGTT--GTTGTGCAAGAAGATTAACTCATAGAG----- ---------ATTGTGCCC----CTAATAATGCTGTATC--ATACACTTG------AAAATTTGGTAAGTAGATAGA---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------TCTCATGTT--GTGTTCTT----------------------------------- --------------------------------------------------ACCACAGTTGAAAAATGGAGAGAAATGG-- ----------GGGCTGTTTTAA-----ACCAACTTCATTTTTTAGAAGGTTGGAT----ATAAATATTTCATTGTCCCAG G >Equus_caballus CTAAAGAAAGCAGCAGCAAATCCCTGTCACCACCAGTCCCCCTCCTGACTCTCTCC-TGCATGTGAAGAA---AAGCCAT TTCAA-------------CCTAAAAGTCCATTGATGGATGAGTG------------------------GATAAAGAAAAT GGGGTGTAT-ACATACAATGGAACATTATTCAGCCTTC-AAAAAGA-AGGATATCCTTCCATAGGGATC----------- --AGCGTGGCTCAACCTCGAGGACGTT-ATGCTGAGTGAAACAAGCCAGTCACAGCAGGACAGATACTGCCTGATAC--- -CTCTTACGTGAGGTCTATAAAGTAGTCAAA--CATAGAAGCAGGGAGTGGAATAGTGGTTGCCT-GGGCC--------G TGGGGAGAGGAAAATGGGGAGTTGCTTTTCAACTGGTATAAAGTTT--GTTACACAAGATGATTAAATTCTAGAGATCTG --------CATTGTGCCTATCGTTAACAATACTGTAGGAAGTACGCTTT------AAAA-TTGTGAAGAAGGTAGG---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------TCTCATGTTAAATGTTCCC----------------------------------- --------------------------------------------------AA-ACAATAAGAAAAACGTGTGTGGTGGAA G---------AGGCTATTTAAA---GGACCAACTTAA-GTTTCAGGAAGCCACAT----GTAAATATTTCATTGT-CCAA G >Ceratotherium_simum CT-AATAAAGCACCAGCAAATTCCTTTCACCACCAGTCCCCATCCTGACTTTCTGCTTGCATATTAAGAA---AAGCTGT TTCAA-------------CCTAAA-ATCCATTGATGGACGAATG------------------------GATAAAGAAACT GTGGTATAT-ACATACAATGGAATATTATTTGGCTTTC-AAAAAGA-AGGATATCCTTCCATATGAGAC----------- --AGCATGGCTGAACATTGAGGACATT-ATGCTAAGTGAAATAAGCCAATCACAGCAGGACAGATACTGCATGATAC--- -CTCTTATGTGAGGTCTATAAAATAGTCAAA--CATAGAAGCAGAGAGTAGAATGGTGGCTGCCA-GGGCT--------G TGGGGAGGGGAAAATGGGGAGTTGATTTTTAACTGGTATAAAGTTTCAGTTATGCAAGATGATTAAGTTCTAGAGATCTG --------CATTGTCCCTATAGTTAACAATATTGTATG--CTACATTTT------AAAATTTGTTATGAAGATGGA---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------TCTCATGTTAAGTGTTCTT----------------------------------- --------------------------------------------------ACCACAATAAGAAAAAATTGCTGGGGGGG- ----------AGGCTGTTTCAA---GGACCAACTTAA-GTTTCAGGAAACTGCGT----GTA-ATATTTCATTGT-CCAA G >Condylura_cristata CTGAATAAAGG--------------------------------------------------------------------- --------------------TGAATAG--ATGAATGGATTAAAA------------------------AAAAAAAATAAC ATGGTATAG-ACATAAAGTGGAATACTACTCAGCCTGA-AAAAAGA-AGCA----CTCCCACATGTGGT----------- --AGCATGACTGAAACTTGAGGACATC-ATACTAAGTGAAATAAGCCAAACACAAGAGGACAAATGCTGCGTGCTGT--- -CATTCACTCAGGGCCTATTAAATCAGCAAACATAGTGAAGCAGA--GTAGAATAGTGGTTGCCAGGCACT--------- GGGAGAATGGGAGGTGGAAAATTACTAATCAACTGCTATGAAGTT--AGTTATGCAAGGTGATTAAGGTCTAG-GTTCTG --------CATT--------TGTTAATA-------------------------------------AAATATATAGA---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------TCTCAC-----ATATTCTT----------------------------------- --------------------------------------------------ACCACAGTAAAAAAGAAATGGGAAAGAAA- ----------ACACTGTCTTAA---GGACTAGCTTAA-ATTTTCAGAAGCCAGAT----GTAAAAATAGCATAGT-CCAA G >Sorex_araneus CGGAATAAAGCTCCAGAAAATTCCCTTCACCCCAGTTACCATTCTTAACTTTCTTTTTGTGTGTTAAGG----------- --------------------TAAAGCACCATTGATAGATGAGTA------------------------AATAAAGGAAAT ATG-----T-ACATACAATGTATTATTACTCAGCCCTATGAAAGTATAGT-----CAGCTATAGGTGACTTGACTTGACT TAACCTTGACTTAACCTTGAGGGTAGT-ATGCCGTGTAAAATAAGCCAATCAC---AGAATAGACAC-AAATGCTTC--- -CACTTATGAGAGATTTGTGAAATAGTCAAACACA--GAATTTAAAAGTTAAATGGGGGTTACTGGGAACT--------- GGGCCAG-GGTAGTAGAGAAATCACAATTTAACTGGCATC-GA-GACAGTTAAGCAAGTCGATT----TTGAGAGACTTG ------TTGCTGATGCCTAAAACGAACAGTACTGTACT--CTTAAGTATATATGAAGGGGGTCTTGAATGGATAGGGATA GTGTACTTACCTTGTACACGGACTTGGGTTCTATTCTCAGCACCAAGTATAGTCTGTCAAGCCCCTCCAAGACTGATCCC TTGAGTATAGAGCTAGAAGTAAGCCCTCAGCACCATGAGACCATGAGGTCTGCCCCAATTACACACACACACACACACAC ACACACACACACACACACACACACCCATAAATAGAAATGAAGTGGTGTTTTATTTTTTTCAACCATTAAAAAAGAAGCCT TTTCTACTCTGGAGAAGTCCATGTTCTCTCTCGATATGTATCTTTCTCATTCTTTTCCCCCACATCTCAAAATTTCTTTT AATAAAACCTGTTTTTCTTCACAAAAAAAACTTAAATCAAATGAAAATTAAATTAAAATAAATAGAAATTGGTGGGGAAT A---------ACACTATC-CAA---AGACTGACTCAA-GTTTTAGAAATCCAGAT----ATTATTATTTTATCAT-CCAT G >Myotis_myotis CTCCCTAATGCCCCAGCAACTCCCTTTCACCACCATTCCCCATCTTGACTTTCTCTTTGCATTTTAAGAA---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------AGGCAATTTCAA---GGACCAGCCTAA-GTTTTAGGAAGCCAGGT----ATAAATATTCCATTGC-CCAA G >Rousettus_aegyptiacus CTAAATAAAGCACTAGCAAATTCCTTTCACCACCAATCCCCATCCTTACTTTATCTTTGCGTACTAAGAA---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------AGGCAGTTTCAA---GGACCAGCTTAA-TTTTTAGGAAGCCAGAT----GTGAATATTTCATTGT-CCAA G >Homo_sapiens CTTAATAAGGTGCCAGCAAAATCCTTGCACCAACATTCCCCATGCCGAACTTCCCCTTGCATATTAAGAA---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------AGAACATTTCAA---GAATCAGCTTAA-TTTGTAAGAATCTGGAT----GTAAATATTTTGTTGT-CCAA G Dog424_LINE >L1_CARN7_3END -------------------------------------------------------------------------------- -----------------TTGTATGGTGACAGATGGTAACTAGACTTATTGTGGTGATCACTTCACAATGTATACAAATGT CGAATCACTATGTTGTACACCTGAAACTAATATA---ACATTGTATGTCAATT-ATACTCAAATAAAAAAA--------- -------------------------------------------------------------------------- >Canis_familiaris AACCTGCTCTCAAGACCC-TATTGCCAGCTGCCTCTT-GGACTTCTCCCA---GAGGTCCCACATACACCTC---AAACT TTGTAT--GTTCAG----------ATGATGGATGTGAACCAGACTTACTGTGGTGATCATTTTGCAATATACACAAATAC CA----ATCATGATGTGCACCCGAAGCTA--ACA---ATATTGTGTGTTGATT-ATACCTCAACAGAAA----------- ---TATATGCATGTGTTTGG---TACTGGACTCATCACCCTCCCTCGAACCTCTAGCTCTTCCAGTTCAGTTCT >Felis_catus AACCTGCTCTCAAGACAC-TATATGCAGCTGCCTCTT-GCACTTATCCTACTGGATGTCCCACATACACCTC---AAACT GAATAT--GTTCAG----------GTGATGGGTGTTAGCCAGACTAATTGTGGTGATCATTTTGCAGTATATACAAATAT GA----ACCATGTTGTACACCTGAGATGA--------ACAGTATATATTGGTT-ATAACTCAATAAAAA----------- ---TATATACATGTGTTCAG---TACTGAGCTCATCACCTTCCCTCAAACTCCTATCTCTTCCAGTTCAGTTCT >Manis_pentadactyla ACCCTGCTCTCAAGACCCTTCTTCACAGCTGCCTCGT-GGACATCT---GCTGGAGGTCCTACATACAACTC---AAACT CAGTAT--GTTCAG----------GTGACACATG-TAACTAGACTTACTGTGGTGGTCATTTTGCAAAATATACAAATAA CAAACTGTTTTCATGTACACCTGAAACTA--ACA---GTGTTGTATGTCAATT-ATCCCTCAATAAAATTTGTTTTTA-- ---AAAAACAATAT-TTCAG---GTCTGACTTCATTACTCTCCTTCAAACCTGTATCTCCTTCAGTCCAGATCT >Sus_scrofa AACCTGCTCTCAAACCCTCTATTTCC-GCTGCCTCTT-GGACCTCT---ACCAGAGGTCCCGCACACACCTC---ACACT TGACGT--GTTCAG----------GGGACAGATGTTAACTAGACTTACTGGGGTCATCATTTCGTGCTGTACACAAATAC TGAACCATGACATGGTA-ACCTGAAGCTAGTATATGTATGACATATACTAATT-ATACCTCAATTAAAAAAAAGAAGCCG ---CATCTGAACATGCTGGG---TACGGAGTCCAGCACCCTCCCTCAGGCGTCTATCTCCTCCTGCCCGCATCT >Tursiops_truncatus AACCTGCTCTCAAAACCCTTATGTCCAGCTGCCTCTT-GGACATCTCCTACTGGAGATCCTATATACATCTC---AAACT GAATAT--GTTCAG----------GTGATACATGTTAACTAGGTTTACTGGGGTGGTCATTTCACAATATATACAAATAC TGGATCATTATGTTGTA-ACCTGAAGCTAATATATGTATGATATATAATAATT-ATACCTCAATTAAAAAAAA------- ---AATCCTAATATGTTCAG---TACTGAGCTCATCGCCCTCCCTCAAACTCCTATCTCCCCCAGTCCGGATCT >Equus_caballus AATCTGCTCTCAAGATGCTTATTTCTTGCTGCCTCTT-GGATATCTCCAACTGCAGGTCCCATATACACCTC---A-ACT TAATATATGTTCAG----------GTGACAGATGTTAACTAGACTCATTGTGGTGATCATTTCACAACATATACAAATAT TGGATCATTATGTTGTACGCCTGAAACTA--ATAATAACATTCTATGTCAATT-ACACCTCAATAAAAAAT--------- ---AAACTTCATATGTTCAG---TACTGAGCTCATCACCCTCCCTCAAACATCTGTCTCCTCCAGTCCAGACCT >Ceratotherium_simum AACCTGCTCTCAAGACCCTTATTTCCAGCTGCCTCTT-GGATATCTCCTACTGCAGGCCCCACAGATACCTC---A-ACT TAATATACGTTTAG----------GTGACAGGTGTTAACTAGACTCGCTGTGGTCAGCACTTCACAATATATACAAA--- ----------TGTTGTACACCTGAAACTAATATA---ACATTATACATCAATT-ATACCTCAGTAAAAAATAA-----AC ---CAACTTCTTATGTTCAG---TACTGAGCTCACCAC-CTCCCTCAAACATCTATGTCCTCCAGTCCAGGCCT >Myotis_myotis AACCTGCTCTCAAGACACTTAATTCCAGCTGCCTCTT-GAAATTCT----GTGGAGGTTCCACATACA---------ACT TAATAT--GTTCAA----------GTGACCGATATTAACAAGACTCATTGTGGTGATCATTTTGCAGTATATACAAATAT TGAATCATCATGTTGTACGCCTTAAACTA--ACA---ATGTTATTTGTCAATT-ACACCTCAATTAAAAAAAA----TAA ---AAACTTAGTACGTTCAG---TACTGAGCACATCACCCTCCCTCAAACTTACATCTCCTCCAGTCCAGATGT >Rousettus_aegyptiacus AACTTGCTCTCAAGACTGTTAATTCCAACAGCCTCTT-GGACATCTCCTGCTGGAGGTCCCACATATATCTC---AAACT TAATAT--ATTCAG----------ATGACAG--GTTAACTAGACTTAC------GATCATTTTTCAATATATATAAATAT CAAATTAT--TGTTGTACACTTCAAATAA-----------TGTTATGTCAATTAATACCTCAGTTTAAAAAAA--CTAAA ---AAACTTGATATGTTCAG---TACTACGCTCATCACCCTTCCTGAAACTTAAATCTCCTC--GTCTGGATCT >Condylura_cristata AACCTGCTCTCAAGATCCTTATTTCCAGTTGCCTCTTCAGACATCTTCTCCTGGAGGTTCCACATATATCTC-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---AAATTTAACATGTATGA---CACTGAAAGCATCA--CTCGCTCCAACTTTTATTTCCAC-AGTCCA-ATCT >Erinaceus_europaeus AACTT--------------TATTTCCAGATGCCTCGA-TGACATCTACT----GACATTGCACATACATTTC-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---AAACATAACATGCA--A---TACCAGGTTTATCA--CTCTCTCAAACTCACATCTCCAC-AGTCCAAATCC >Homo_sapiens AAACTGGTC---------------------GCCTTTT-GGACATCTCCTACTGGAGGCCCCAAGGA-ACCTC-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---AAACTTA----GCTCAG---TACTGAACTCATGGCCCTCTCTCAAACAT-TATCTTCTCCAGTCCAGATTT Dog426_LINE >L1_CARN7_3END ------------------------------------------------------------------------------AC AATGTATACAAATGTCGAATCACTATGTTGTACACCTGAAACTAATATAACATTGTATGTCAATTATA-CTCAAATAAAA AAA----------------------------------------------------------------------------- -------- >Canis_familiaris GGAGGATAATTAGCGATTCCACATTTCATTTTGAAA---AGAGTTGCTTTTCAA---AATAA------------------ ------AACAAAATACAAATCATTAAGTTGTACACCTGAAACTA------TGTTACATGTCATTTATATCTC-------- ------AAT-------AAAAAAAAA-----------GGAGAACAGGGTCAAAGTTCATGAAAGATTATATTTGTGACC-- -ATATTTC >Felis_catus GGAAGATAATTAGCCATTTTACATTTCCCT----AC---AGTGTCACTTTTCGA---AATAAAAGGAAC---AGA----- ------CACAAATACTGAATTATTAAGTTGTACGCCT-------ATATGATGTTCTATGTCAATTATAACTC-------- ------AAT-------AAAAAAAGGAAAA-------GGAGAAGAGGGTCAAATTTAATGAAAGATTATATTTGTGACTAC AACATTTC >Manis_pentadactyla GGGAGATCATTTGCCATTCCACATTCTCT-----AC---AGTGTTGGCTTTCAA---AATAAAAGGAAG---GAA----- ------TACAAATATCAAATCATTAAATTGTACACCTGAACCTAATACAATGTTATATGTCAATTATGTTTC-------- ------AAT-------AAAAAGAGGAAAGAAA---TAGAA-----AGTCAAAGTTCATGAAAGATTA-ATTTGTGAACAT GAAATTAC >Sus_scrofa GGAGATCATTTAGCCATTCCCCATTCTTT-----AT---AGTGTTACCCTTCAA-------------------------- -----------ATATCAAATCGTTATGTTGTACACCTGAAACTAACATAATAT--TATGTCAATTATATTAC-------- ------AGTTTAAAAAAAAAAAAAAAAAGAAG---TGGAGAAGAGGGTTAAATTCCATGAAAGGTTA-ATTTGTAACCAC AACATTTC >Tursiops_truncatus GGGAGATAATTAGCCATTCCACATTCTCT-----AT---AGTGTTGCCTTTCAA---CAAAA-GGGAAA---GAA----- ------TACAAATATCAAATCAT--------GCATTTGAAACTAACATAATATTTTATGTCAATTATATCTC-------- ------AAT-----TTTAAAAAAGGAAAGAAG---TAGAG------GTCAAATTTTATGAAAGATTA-ATTTGTG----- -ACATTTC >Equus_caballus GGGAGATAATTAGCCACTCCACATTCCCT-----AC---GGTGTTGCCTTTCAA---AATAA----AAA---GAA----- ------TACATACATCAAATCATTATGTTGTACATCTGAAACTAATATAGTGTTATATGTCAATTATATTTC-------- ------AAT-------ACAAAAAGTAAGGAAG---TGGAGAAGAGGGTCAAATTTCATAAAAT-----ATTTGTGACCAC AACATTTC >Ceratotherium_simum GGGAGATAATTAGCCATTCCACATTCCCT-----AT---GGTGTTGCCTTGCAA---AATAA----AAA---GAA----- ------TACATATATCGAATCATTATGTTGTATACCTGAAACTAATATAGTGCTATATGTCAATTATATATC-------- ------AAT-------AAAAAAAGGAAAGAAG---TGGAGAAGAGGGTCAAATTTCATGAAAGCTTA-ATTTGTGACCAC GACACTTC >Myotis_myotis AGGCAGTAACTAATCATTCCACATTCCCT-----AT---AGTATTGCCTTTTAA---AA-AG------------------ ------TACAAATGTCAAGTCATTATGGTGTATATCTGAAACTAACATAGTGTAGTATGTCAATTTTA------------ ----------------AAAAAAGGATAAGAAG---TGGAC----GAGTCAAATTCCGTGAAAGATTA-ACTTGTGATC-- -ACATTTC >Rousettus_aegyptiacus GGGAGATAATTAGCCATTCCACGTTCCCT-----AT---GGTGCTGACTTTCAA---ATTAG---AAAA---AGA----- ------------------------------------------GAGTCCCTCATTATGTGTCAATTACGTCTC-------- ------AATTTTT---AAAAAAGGAAAAAAAG---TGGAG--AAGAGTCAAATTTCATGAAAGATTA-ACTTGTGACC-- -ACATTTC >Condylura_cristata AGGAG-TAGATAACCATTCCACCTTCCCT-----AC---AGTGTTACCTTTCAA---GAGACAAGAAAG---GAA----- -------------------------------------------------------------------------------- -----------------------------------TGGAAAAGAGTGATACATTTCCTGAAAGATTA-ATTTGTAACCAT GATATTTC >Sorex_araneus GGGAGATAACCAGCTATTTCACATTCCCC-----ATGCAGGTACTGCCTTTCAA---AACAAAACAACAAAGCAG----- -------------------------------------------------------------------------------- -----------------------------------TGGCAAAAAGGGACATATTTCCTGAAAGATT--AACTGTGACTGT GACATTTC >Homo_sapiens GGGATATAATTAAACATTTCATATTTTCT-----AT---AGTGTTGTCTTTCAA---AATAA-----------AG----- -------------------------------------------------------------------------------- -----------------------------------GGGAGAAAAGGGCCAAATTCC-TAAAAGATTA-ATTTGTGACCAT GACATTTC Dog427_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------TTTTTCCAGCTTTATTGAG GTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGAT----ATACGTATACATTGTGAAA TGATTACCACAATCAAGCTAAT-----TAACATATCCATCACCTCACATAGTTACCAT-TTTTTTGTGTGTGGTGAGAAC ACTTAAGATCTACTCTCTTAGCAAATTTCAAGTATACAATACAGTATTATT-AACTATAGTCACCATGCTGTACATTAGA TCTCCAGAACTTATTCATCCTGCATAACTGAAACTTTGTACCCTTTGACCAACATCTC-CCCATTTCCCCCACCC----- -------CCCAGCCCCTGGCAACCACCATTCTACTCTCTGCTTCTATGAGTTTG----------ACTTTTTTAGATTCCA CATATAAGTGAGATCATGCAGTATTTGTCTTTC-TGTGCCTGGCTTATTTCACTTAGCATAATGTCCTCCAGGTTCATCC ATGTTGTCACAAATGGCAGGATTTCC---TTCTTTTTTAAGGCTGA--ATAATATTCCATTGTGTATATATAC--CACAT TTTCTTTATCCA-TTCATCCGTCGATGGACACTTAGGTTGNTTCCATATCTTGGCTATTGTGAATAATGCTGCAATGAAC A-----TGGGAGTGCAGATATCTC-TTCGAGATACTGATT--TCATTTCCTTTGGATATATACCCAGAAGTGGGATT--- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------- >Canis_familiaris TTTAA---ACCAGAGTATTCCT---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------GAGGATATAAAATAGAAAGTATCTAA----TTATA---TATGAATTAGG-TTTTTTT- --------TCCTTGTTGTGTGCCAAG-TCCTACCTCAATTTGT-----------CATCCCCACCCCCCAGTTGTATTGAG ATATAATTGACATAG-AACATGGTAGTAGTTTAAGGAGTACAGTATAAAGATTTGGT----ATATGTATATACTGGGAAA TGACTACCACACTAAGTCTAGT-----TAAC--ATCCATCACCTAACATAGTTACAAA-TTTTTTTCTTGTGATGAGAAT TTTAAAAATCTA----TTTAGCAGCTTCC-AATATCTAATACGGTATTGTT-AAGTACAGTCACCAAGCTGTATATTATA TCGTCAGAACATTTTAATCTT--GTAACTGAAAGTTTGTACCTTTTAACCAT--CTTCACCCATTTCCCCCAGCCCCAGA -------TTCCTACTCTGGCAACCACTTACCCAT--CCTGTTTCCGTGAGCTCATTTTTTTTTTTTTTTTTTAGATTCCA CATATAAGTAAGGTCATACAGTATTTGTCTTTT-TCTGTCTG----ATTTCACTTAGCACAGTGCCCTTAAAGTCCATTT ATGTTGTTGCAAGTGGCAGGATTTCC-----TTTTATTATGACCAA----ACTATTCCTCT-TATATATATAG--CACAT CTTCTTTATCCA-TTTATCCACTGATGGAC--TTAGGTTGTGTTCATGTCTTGGCTAGCGTAAATAATGCTGCAGTAAGA ACGGGGTGGGGGGGCAAATATCTC-TTTAAGGTCATGATC--TCATTTCCTTTAGTCAAATGC----------------- CATG-----------------------------------------------------CCATAGTTCTTA-----AATCCC TTTCATTAGAGTCATAATTTCTAGG------------------------------------------------------- -------------------------------------------------------------------------------- -----------------AGTAGTCATATGGTGAACTTGGTACAAGCATGGAATTTAGAA-TCAGATC >Felis_catus TTTAA---ACTAGAATATTCCT---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------AAGGACATAAAATAGAAAGTATCTACCCTGTTATA---AATTAATTATG-ATTTTTA- --------TCCTTGTTCTCTGTTAAATTCATATCTCAATTTG-------------CTACCCCACCAGCCGTTGCATTGAG ATATAACTGACATAC-AACACTGTATTAGTTTAAAGAGTACAACATAATGGTTTGGT----ATATGTATATATTGTGAAA TGATTGCCACAGTAAGTCTAGC-----TAAC--ATCTGTTGCCTAACATAGTCCCCAC-TTTTTTTCTTGTGATGAGAAC TTTTAAGATCTACTCTCTTAGCAGCTTTC-AATATATAGCAAAGTATTATT-------AGTCACCATGGTGTGTATTACA ACATCAGAACATATTAATCTT--AAAACTAAAAGTTTGTAGCTTTTGACCAC--CTTCACCCATTTCCCTCAGCCCAAGC C------CCCTGCCTCTGGTAACTGCCAATCTGT--TCTGTTTCTATGAGCTCA----------ATTTTTTTAGATTCCA CATATAAG----ATCATTCAGTATTTGACTTTC-TCTG--------ATTTCACTTAGTACAATGCCTTCAAAGTCCAATC ATGCTGTTGCAAGTGGAAGGATTTCCTTTTTTTTTTTTATGACTGA----AAGATTCTATT-TATGTATATGC--CACAT CTTCATCATCCTCTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------------- NNNN-----------------------------------------------------NNNNNNNNNNNN-----NNNNNN NNNNNNNNNNNNNNNNNNNNNNNNN------------------------------------------------------- -------------------------------------------------------------------------------- -----------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Sus_scrofa TTTAA---ACCAGAATCTTCCT---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------AAGGACAGGAAATAGAAAGTATCTAGCCAGGTATA---TAAAAATTTGT-TCTTTTT- --AAAAAAATCTTGTTCTCTGCCAAG-TCATACCTCAATTTGTGCTG-------TCCCCTTTCCCCCTAGTTTAATGTAG ATGTAATTGACATAT-AACATGGTATTAGTTTAAGGCACACCACATAATGGCTTGAT----ATATGCATATAGTGTGAAA TGATGACCACAGTAAGTTTAACAGCTATAAC--ATCCATTACCTCGCATAGTTACAA--TTTTTTTCTTATGATGAGAAC TTTTCAGATCTACTCTCTTAGCAAGTTTC-AATACACAATACAGTATTGGT-AACTACAGTCATGATGCTGT--ATCACA TACTCAGAGTTTATTGATCTT--AGAACCAAAAGTTC-TACTTTTTGACCACATTTTTACCCATTTCTCTCACTCCTATA CCCACCACCCTGCCCTTGGCAACCACCAATCTCTTCTCTCTTTCCAAGTGTTCG---------ATTATTTTTAGATTTTA CATATAAGTGATATCAAACAGCATTTGCCTTTCTTTTGTCT-----ATTTCACTTAGCATAATGCCCTCAAGATCCATCT ATATTGCTACAAATAGCAAGTTTTC----TTTCTTTTTATGACGAA---TAATGTTTCATTGTATATATATGC--CACAT TTTCTTGATCCATTTTATCCATTGATGGACATTTAGGTTGTTTTCATGTTTTGGCTATTGTAAATAATGTTGCAATGAAC A-----TGGGGGTGTAGATACCTC-TTCAATACAGTGATT--TAATTTGCTTTGAATTCAGAC----------------- TACA-----------------------------------------------------CATTAGTTATA------AATTCC TTCAATCAGAGTCATACTTTC----------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------TGGAA-TCATATC >Tursiops_truncatus TTTAA---ACCAGAATATTCCT---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------AAGGACATAAAATAGAAAGAATTTAACAAGTTATA---TCTGTATTACT-TCTTTTT- --AT--TTTCCTTGTCCTTTGCCAAG-TCATACCTCAATTTGTTTT--------TCCCCTCCCCCATCAGTTTTATCGAG ATGTAATTGACATAT-AACATGGTAATAGTTTAAGGCGTATAACATAATGATTTGAT----ATATGTATATACTGCAAAA TGATTACCACAATAAGTTTAGT-----TAAC--ATCCATC-CCACGCATAGTTGCAAT-TTTTTTCCTTGCGATGAGAAC TTC--AGATCTACTCTCTTAGCAACTTTCAAATATACAATACAGTATAGTT-AACTGTAGTCATAATGCTGTACATTACA TCTTCAGAACTTAC---TCTT--ATAACTGAACGTTT-TACCTTTTGACCAC--CTTTACCCAACTCTTCCACCCC-ACC CTCACTGCCTTGCCCTTGGCAACCACCAACCTGTTCTCTATTTCTATGAGTTCA---------ATTATTTTTAGATTCCA CATATAAGTGACATCATACAGTATTTATATTTC-TCTGTCTGACG-AATTCACTTATCATAATGCCCTCAAGGCCCATCT ATGTTGTTGCAAATAGCAGGATTTCTTTCTTTCTTTTTATGGCCAA--GTAATATTTCATT--ATATATATGC--CACAT TTTCTTTATTCA-TTCATCCATTGATGGACATTTAGGTTGTTTCCATGTTTTGGCTATTGTATATAATGCTGCAATGAAC A-----TGGGGGTGTAGATATCTT-TTCAGTATAGTGGTT--TAGTTTCTTTTGGATATAGAC----------------- TATG-----------------------------------------------------CATTAGTTCTTA-----AATTCC TTC-ATCAGAGTCATATTTTCTAGG------------------------------------------------------- -------------------------------------------------------------------------------- -----------------AGCATTCGTACAGAGTACCTGTTAAAAGTGTGGAATTTAGAA-TCAGATC >Equus_caballus ATGAA---ACCAGAATATTCCT---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------GAGGATGTAACACGGAAAGTATCTAACCAGTTATA---TATGCATTAGT-TCTTTTT- --TC--TCTTCTTGTTCTCGACCAAG-TCAAACATCAGTTTGTGTTTTTGTTTTCTGTCCCCGCCCCTAGTTTTACTGAG ATATAATTGACATAT-AACATTGTGTTAGTTTCAGGTGCACAACATAATGATTTGAT----ATATGTATATATTGTGAAA TGATCACCACAATAAGTTTAAT-----TAAT--GAGCATC-----ACATCGTTACAAAGGTTTTCTCTTGTGATGAGAAC TTTCAAGATCTACTCACTTAGCAACTTTCAAATATACAATATAGTATTGCT-CACTATAGTCACCATGCTGTGCATTACA TCCTCATGACTTATTAATCTT--ATAACTGAAAGTTTTCAGCTTTTGACCAC--CTTCACCCATTTCCCTCACTCCCATC CCACCC-CTCTGTCTCTGGAAACCACCAATCTACTCTCTGTTTCTATGGGTTCA---------ATTTTTTTTACATTCCA CCTGTAAGTGAGATCACACCACATTTGTCTTTC-TCTGCCTGAC--ATTTCACTTAGCATAAT-CCCTCAAGGTCCATCT ATGTTGTCACAAATGGCAAGATTTCC---TTCTTTTTTATGGATGAG-AAAATATTCCATTGTGTATACATGTGCCACAT TTT----ATCTG-TTAACTCATCAATGGACACTTAGGCTGTTTCCATGTCTTAGCTATTGTAAATAATGCTGCAATGAAC A-----TGGGGGTGCAGATATCC--TTCAATATCGTGATT--TTGTTTCCTTCTAATAAATGC----------------- TATG-----------------------------------------------------CATTAGTATGCATT---AATTCC TCCTATGAGAGTCATAACTTCTACG------------------------------------------------------- -------------------------------------------------------------------------------- -----------------AGCAGTCATATTGTGTACCTGTTAAAAGCATGGAATTTGGAG-TCAGATC >Ceratotherium_simum ATTAA---ACCAGAATATTCCT---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------AAGGACATAACATAGAAAGTATCTAACCAGTAGTA---TATGCATTAGT-TCTTTTT- --TC--TTTTCTTGTTCTCTGCCAAG-GTATACCTCAATTTGTGTTTTTTTCCATTCCTGCCCCCCCAAGTTTTATTGAG ATATAATTGACATAT-GACATTGTATTAATTTCAAGTGTACAGCATAATGATTTGAT----ATATGTATATATTGTGAAA TGATTACCACAATAAGTTTAAT-----TAAC--ATTCATC-----ACATTGTTACAACTTCTTTTTCTTGTGATGAGAAC TTTTAAGATCTACCCTCTTAGTAAC-TTCAGATATACAATACAGTATTGCTAAACTATAGTCACCATGCCGTACATTACA TCCTCATGAGTTATTAGTCTT--ATAACTGAAAATTTGTACCTTTTGACCCC--CTTCACCCGTTTCCCTCACTCCCATC CCCACC-CCCTGCCTCTGGCAGTCACCAATCTACTCTCTGTTCCTATGAGTTTA---------ATTTTTTTTAGATTCCA CATATAAGGGAGATCATACAGCATTTGTCTTTC-TCTGCCTGACTTATTTCACTTAGCATAATGCCCTCAAGGTCCGTCT ATGTTGTCACAAATGGCAGGATTTCC---TTCTTTTTTGTGGATAAATAAAATATTCCATTGTATGTATATAC--CACAT TTTCTTTATCCA-TTCATTCATCGATGGACACTTAGGTTGTTTCTATGTCTTGGCTATTGTAAATAATTCTGCAATGAAC A-----AGGGGGTGCAGATATCTC-TTCAATAGAGTGACT--TTGTTTCCTTCTAATATATAC----------------- TATG-----------------------------------------------------TACTAGTATGCATT---AATTCC TTCTATCAGAGTCATAATTTCTAGG------------------------------------------------------- -------------------------------------------------------------------------------- -----------------AGAAGTCATATAATTTATCTATTAAAAGCATGGAATTTGGAA-TCAGATC >Myotis_myotis TTTAATATTTCAGAATGTTCCT---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------AAGGACATAAAAAAGAAAGTATCTAACCAGTTATA---TGTGCA-------------- -----------TTGTTCTCTGCCAAG-TCATACCTCAATTTGTG--------------CCCCACTCCCAGTTTTATTGAG ATGTAATTGATGTAT-AACAATCCATTAGTGTAGGGCACATGGCAT---GATTTGAT----GTATATACA---AGCGGAA TAATTGCCACAGTAAATTTAGT-----GCAC--ATCCATCACCTCACATAGTTACAA---TTTTTTCTTGTGATGAGATC TTTTAACATTTACTCCCTTGGCAACACTCAAATATGAAATACAATATT----AACTACGGTCACCATGC-ATACATTACA TTCTCAGAACTTATTAATCTT--ATAACTGAAAGTTTCTACCTTTTGTTCAC--CTTCACCTATTTTCCTAATCTCTGTC -------CCCTGCCTCTAA-AACTGCCAATCTGTTCTCTGTTTCTATGATTTCA----------ATATTTTTAGAGTCCC CATATAAGTGAGATCATGCAATATTTATTTTTT-TCTGCCTGCCTTACTTCACTTAGCATAATGCCCTCAAGATCCATAC A---TGTCACAAATAGCAGGATTTTC---TTCTTTTTTATGGCTAAATAAAATATTCCATTGCAT-TATATGC--CACAA GTTCTTTATCCA-TTCATTCATCAGTGGACACTTAGGTAGTTCCCATGTCTTGGCTATTGTAAATAATGTTGCCATGAAC A-----TGGGGCTGCAAATATCTCTTTTGATGTAGTGTATAACCATTTCATTTGGATATACAT----------------- TATGCATTAGTTCTATTTATTATTAAGTTTTTGGGGTGACATTGGTTAATAACATTGCATTAGTTCTTA-----AAGTCT TTCTACCAGAGTCATAATTTCTAGA------------------------------------------------------- -------------------------------------------------------------------------------- ------------------GCAGCCATACAGTATGCCTGTTAAAAGCATGGAATTTAGAA-TCACATC >Rousettus_aegyptiacus ATTTA---AACAGACTATTCTT---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------AAGGACCTAAAATAGAAATTATCTAACCAGTGATA---TATGCA-------------- -----------TTGTTTTCTGTCATG-TCATA--TCAATTTGTGTAA-----------CCCCACCCCAAGTTTTACTGAG ATGTAATTGGCATTT-AACGTT-CATTAGTTTAAAGTGTACATGATTATATATAAATATAAATATATATATATATCAAAA TAATTACCATAGTAAGTCTAGT-----TACC--ATTCATCACCTCACATAGTTATAA---TTTTTTCTTCTGGGGAAAAC TTTTAACATCAACTCTCTTAGCAACATTCAAATATACAATATAATATTGTT-AACTATAGTCACCATGCTGTGCCTTAAA TCTT-AGGACTTATTAATCTT--ATAATTGAAAGTTTGTACCTTTTGGTCAC--CTTCACCC-TTTCCCCGACCC----- -------TCCAGCCTCTGAAAACTACCAATCTGTTTTTTGTTTCTATGAGTTCA---------ATATGTTTTAGATTCAA CATAT---TGAGATCATACAGTATTTGTCATTC-TCTGCCTAACTTATTGTACTTAATATAATGCTTTCAAGGTCCATCT ATGGTGTCACAAATGGCAGGATTTCC---TTCTTTTTAATGGCTGGATAAAATATTCCATTGTGTA-ATACAC--CACAT TTTCTTTATCCA-TTTATCCATTGATGGACATTTACGTAGTTTCCATGCCTTGGCTATTGTAAATAATGCTACCGTGAAC A-----TAGGGGTACAGATATCTC-TTTGACATAGTGATT--TTATTTCCTTCAGATATGTAC----------------- TATG-----------------------------------------------------CATTAGTTCTTA-----AGTTTC TTCTCTCAGAGTCATAATTTCTAGG------------------------------------------------------- -------------------------------------------------------------------------------- -----------------AGCAGTCACATGGCGTGCCTATCAGAAGCATGGAATTTGGAA-ACAGAGC >Condylura_cristata TTCAA---ACTAGAATATTGCC---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------AAGGACTCAAAAT-GAGATTACTTAGC-AATTATA---TATGTCTCAGT-TCTTAAA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------AATTCC TC---TCTGAGTCATAAT-TCTATG------------------------------------------------------- -------------------------------------------------------------------------------- -----------------AGCAGTAACATAATGTACCTGTTAAAAATATGGAATTTGGAA--TAGATC >Uropsilus_gracilis TTTAA---ACCAGAATATTGCC---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------AAGGACTCAAAAT-GAGAACACTTTAC-AGCTATA---TATG--TCAGT-TCTTAAA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------AATTCC TC---TCTGAGTCATAATTTCTAAG------------------------------------------------------- -------------------------------------------------------------------------------- -----------------AGCAGTAACATAGTGTACCTGTGAAAAGTATGGAATTTAGAA--CAGATC >Homo_sapiens TTTAA---ATGAGAATATTTCTTTTTTCTTTTCTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCGCTCTCTCACCCAGGC TGGAGTGCAGTGGTGAGATCTTGGCTCGCTGCAACTTCCATCTCCCGTGTTCAAGCGATTCTCCTGCCTCAGCCTCCCAT GTAACAGGCGCCCACCAACACGCCCAGCTAATTCTTGTATTTTCAGTGGAGACAGGGTTTTGCCATGTTGGCCAGGCTGG TCTTGAACTCCTGACCTCAGGTGATCTGCCCGCCTTGGCCTCCCAAAGTTCTGGGATTACAGGCATGAGCCATTGCATCC GGCCCTGAACCAGAATATTTCTAAGGACATTAAATAGGGAGAATCTACCCAGCAATA---TATCCTTTAATGTCTT--A- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------AATTCC TTCTATCAGAGTCACAGTTTCTAGGGAGACATTTGTATAGGGTACCTGCTAAAAGTGTAAAATTTGGAATTCGGATGTGA TTTCAAATTCCCTATATGCCAATTATTTGAGAATCTACCCAGTAATATATGCATTAATGTCTTAAATTCCTTGTGTTGGA GTCACAATTTCTAGGGAGACATTCATATAGTGTACCTTCTAAAAAGATGGAATTTAGAATTCAGATC Dog430_LINE >L1MA9_3END -------------------------------------------------------------------------------- TTTTTCCAGCTTTATTGAGGT-ATAATTGACAAATAAAAAT-TGTATATATTTAAGGTGTACAACGTGATGTTTTGATAT AC-GTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATC---ACCTCACATAGTTACCA------- ---TTTTTTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAAATTTCAAGTATACAATACAGTATTATTAA-- -C--TATAGTCACCATGCTGTAC----ATTAGATCTCCAGAACT------------------------------------ --------------------------------------------- >Canis_familiaris AGGTTATGCTGCAGTAACA----AATAATGTTAAATCTCAGTGGCTTAAAAGAA---CAAAAGGGTT------------T TTTTTTAAGTTTTATTGAGAT-ATAATTGACAT-TGGCACTGTGTCTAAGTCTAAGGTGCACAGCAAAATGACCTGACAT ---CCATATATTGTGCTATGACTACCACAATAAGTTTAGTTAAT---GCTATC---ACCTCATCAAGTCACAAAAAT--- TTTTATTTTGCCTCAGGATGAGAACTTTTAGGATCTAGTCTTTTAGCAACTTTCAGATATACTATTCAGCAGTGTTAA-- -C--TACAGTCATTGTGTTGTAC----ATT----------------------------------------------CAAG TCCAATACAAGCTGGCAGGAAGG--TCCTGCTCATGGCAGTTTCT >Felis_catus AGATTAATCTGTGGTAAC--------AATGTTAAATCTCAGTGACTTAAAAGAA---CAAAAACTTTTTAATT------- --TTTTTAGTTTTACTGAAAT-ATAATATACATACAACACT--------GTTTAAGATGTACAGCATAATAACTTGACAT ---CCATATGTTGTGCAATGACCACCTCA-------------------CTATC---ACCTCA-CTAGCTACAAAA----- --TTTTTTTTCCTTGTGATGAGAACTTTTAGGATCTACTCTTTTAGCGACTTTCAGATATACTATACAGCAGTGTTAA-- -T--TACAGTCACTGTGTTGTAC----ATT----------------------------------------------CAAG GCCAATACAAGTTGACAGGAGGG------------------CTCT >Manis_pentadactyla AGTTTATACTGTGGCAACA----AATGGTGTTAAATCTCACTGTCGGTGGGGAA---CAAA-TTTTATT----------- -----TCAGTTTTATTGAGAT-ATAAATGACATA-AACACT--GTATAAGTTTAGGGTTTACAGCATAATAACTTGACAT ---ACATATATTGTGAAGTGATTACCACAGTATGTTTAACTAAC--ACCCATC---ATCTTG-ATAGTTACAAAAAA--- ----ATTTTCCCTTGTGATGAGAACTTTTAGGATTTACTCTCTTAGCAACCTTCAAATACACTACGCAGCAGTGTTAA-- -C--TATAGTCATCATATTGGAC----ATTATAT-------------CAAAAGTCTGTTTCTT---GATCTTGCTACACA TCCAGTTCAAGCTGGTAGGAGGG--CTCTGCTCATCACAGTATCT >Sus_scrofa AGCTTATACTGTGGTAAC--------AATGTTAAATCTCTGTGGCTTAAAGGAA---AAAAAGTTTACTTC--------T TTTTTTCAGGCTCATTGAGAT-ATAATTGACATACCACACT----CTAAGTGTAAAGTGTGCAGCAAAATGACTTGACAC ---ACATCTATCGTGTAGTGATTGCTGCA------------------TTCATC---ACCTC--ATGGTTATCCAA----- TTTTTTATTTCCTCGTGGTAAGAACTTTCATGGTCTACTTTCTCGGCACCTGTGAAATA-------CAGCAGTGTTGAGT GTTTTGTCGTCATCCTGTTGTAC----ATCCCAT-------------CAAGTGTTTACCTCTT---GATCCTCCTTCACA TCCCACACGAGTCGGCAGGAGAG--CTCTGCTCATCGCTGGCTCT >Bos_taurus AGCTAATACTGTGAT--------AATAATATTAAATCTC---GACTTAAAGGAA---CA--------------------T TTTTT------TTTTTCAGAT-ATAATTGACATACCACCCG----GTAAGTTTAAGGCGTATAGCATAATGACTTTACAT AC-ATATATATTGTGTAATGGATAGCACAGCAAGTTTGGTTAAC--ATTAATA---ACCTTGTATAGTGACC----TCCA TTTTTTATTTCCTTCTGATGAGAACTTTCAGAATCTACTCTCTTGGCAACTTTCAAATATATCAGACAGCAGTGCTGA-- ---------CCGTTATGTTGTGT----ATCACAT-------------CAAACATTTATTTCTC---AATCCTGCTACATG TCCCATACAAGTTGGCAACTGAG--CTCTGCTCATCTCAGTCTCT >Equus_caballus AGCTTATACTGTGGTAACA----AATAATGTTCACTCTCAGTGGGTTAAAGGCA---CAAAAGTCTATTTCT-------T TTTTTTCAGTTTTATTGAGATAATAATTGACATACAACACT--GTGTAAGTTTAAGGTGTGCAGCATAATGACTTGACAC ---ACACATATTGTGAAATGATTACCACAATCAGTTTAGTTAAC--ATCTATC---ACCTCATATAGTTACAAGAAA--- ATTGTTTTTTCCTTGTGATGAGAACTCTTGGGATCTACTCCCTAAGCAACTTTCTGATATACTATACAGCAGTGTTAA-- -T--TCTAGTCCTCAGGTTGTAC----ATTGCAT-------------CCTAAGTTTATGTCTT---GATTCTGCTACAAG TCAAATACAAGTTGGAAGGAGAG------------------CTCT >Ceratotherium_simum AGCTTATACTGTAG--ACA----AGTAATGTTAAATCTCAGTGGCTTAAAGGCA---TGAAGGTTTATTTCTTTTT---T TTTTTTCGGTTTTATTGAGAT-ATAATTGACAAACAACACT--GTATAAGTTTAATGTGTCCAGCATAATGACTTGACAT ---ATATATATTGTGAAATGATTACCACAATAAGTTTAGTTAAC--ATCTATC---ACCTCATATAGTTACAAAAAA--- AATTTATTTTCCTTGTGATGAGAACTTTCAGGGTCTACTCCCTAAGCAACTTTCAAATATACTATACACCAGTGTTAA-- -T--TATAGTCATGATGTTGTAC----ATTACAT-------------CAAAAGTTTATTTCTT---GATCCTGCTACAAG TCCAATACAAGTTGGTAGGAGGG------------------CTCT >Myotis_myotis AGCTCTTACTGTGGTCACCATGCGATACTTTGAAATCTCAGTGGCTTAAAGGAA---CCAAGATTT-------------T TTTTTTCAGTTCTGCTGAGAT-ATAATTGACATACAACACT--GCACACATTTAAGGTGTGCAGAGGAACGACTTGTCAT GCACCACATATTGTGAGATGATT-CCACAGTAAGTTTAGTTAAT--ATCCATCATGACCTCACATAGTTACAAAAAAACA TTTTTTTTTTACTTGTGATGAGAACTTTCAGAATTTACTCTCTTAGCAAGTTTCAAATATGCCAGACAGCGGTATTAA-- -CTATATAGTCA---------AC----ATTGCAT-------------CGACGGTTTCCTTCTT---GAGACCACTGCAAG CCCGGCACAAGTTGGCAGGAGGGCTCTCTGCTCATGGCAGTCTCT >Rousettus_aegyptiacus CACTTACACTGTGGTAATGATATAATAATTGTAAATCTCAGTGGTTTAAAGGAA---CAAAAGTTTG------------T TTTTTTTAGTGTTATTGAGAT-GTAATTGACACAAAACACT----ATAAATTTAAGGTGTGCAGCATAATGACTCGATAC ---ATGTATGTCGTGT-----------------------------------------------ATAGTCACAAAAAT--A TTTCTGTTTTACTTGTGATGAGAACTATCAGGATCTACTCTCTTA--------------------CCAGTAGTGTTAA-- -CTATATAGTTGTCATGT---ACATTAATTACAT-------------CAAAGGTTTATTTCTC---TGTCCTGCTGCAAA TCCAATATAAGTTGGCGAGAGGGCTCCCTGCTCATTGCAGTTTCT >Condylura_cristata AGTTTATACTGTGGTAACA----AATACTGTGGAATCTCAGTGTTTTAAAGAAA---TGAGAGTTTAGTTTT-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------GGTCCTGATAGAAG CTCAATACCAGTTGGCAGGAGAG--TTCTGTTCA--------TCT >Solenodon_paradoxus AGCATATACTGTGATAGCA----AATAATGTTATATTGCAGAGATTTA--GAGA-----AGAGTTTCTTTCTC------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------TATCCTGCTACAAG TCC-ACACAAGT----AGGAGGGCTGTCAGACTCCTGTCATCTCT >Heterocephalus_glaber AGCACACACTACAGTAACA----AATAATGCTAAATCTCAGTGGCACAA-GAAA---CAAAAGCTCATGTCTC------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------CATCTTGTTACAAG TCCAGAACAAGTTGGTAGGAGGG--CTCTGTGTCTCGCAGTCTCC Dog431_LINE >L1_CARN7_3END -------------------------------------------------------------------------------- GGTGACAGATGGTAACTA---GACTTATTGTGGTGATCACTTCACA--AT------------GTATACAAATGTCGAATC ACTATGTTGTACACCTGAAACTAATATAACATTGTATGTCAATTATACTCAAAT---------------AAAAAAA---- -------------------------------------------------------------------------------- ------------------------- >Canis_familiaris AGCGACAGAGTAA---TATATTATTAT-AGAAAAA-TCCCATACAAAATGATAAT---AAGAACTC-----AGAGGA--- -------GATGTCAAGTA---GACTTATCGTGATCATC-TTTCTCA--AT-------------TACACAAATATCATATC ATTATGTTGTATACCTGAAACTACTATA--ATTATATGTCAATTGTATCTCAATTAAA-----------AAGGAAAGTCA AATCACCACCAC------CAACAATAAAA---AAGAACTCA--GG---AAAAAA----TAGAT-GAAGTTACACATAATT CA-AAATGAGGATTTTAAAGGGCTA >Felis_catus AGCAAAGGAGTAA---TATATTATTATAAAAAAAA-ACCCATACAAATTGATAAT---AAGAACTC-----AGAGAA--- -------AAGGTTAAGTA---GACTTCTTGTAGTGATCATTTCTCA--CT------------TTACACAAATATCATATC ATTATGGTGTATACGTGAAACTACTATA--ATTGTGTGTCAATTATATCCCAATT--------------AAAAACGATCA AATCTCTATCAA---TACTGCCAACAGAA---AAGAATTCA--GG---AAAAAAAAAATAGGC-AAAGTTATGGATAATT CGCAAATGGTGATTTTAAA--ATTA >Manis_pentadactyla AGCAAAGGAGTTA---TACATTATAG--AGAAAAA-TCCCACATAGACTGA---T---AAGAACTC-----AGAAGA--- -------GACATTAACTA---GATTTACTG---TGATCACTTCACA--AT------------ATACACAAATATTGGAAC ATTATATTGTACATCTGAAACTAACATG---TTGTATGTTAATTATATCTCGATT--------------AAAAAAACAAC AACCCCCCCCAC-----CCCACACACTAA---AAAAAATCA-GGG---AAAAAA----TGGGC-ACCACTGTGGATCATT CACAAAGGATGATTTTAAATGGCTA >Sus_scrofa AGC-AAAGAGTAA---AATGCTGTTGCAGAAGAAAGTCCCACAGCGA-TGATGAT---GAGAATC------AGAGGG--- -------GATGCTAACTG---GACGTACTG-AGTGGTCACGTCACA--AT------------ACACACAAACACTGAATT ATCACACTGTACACCTGAAACTAACACA-------GTGTAAATTATTTCTCAAAAAAAAAAAA------AAAAAACCCCA AACTATCACCAC------CACCACCAAGA---AAGAACTTGGTGG---AAAAAAAA--TGGGCAAATGTTAAG--TAATT CATAAATGGTAACTTCAAATGGCTA >Tursiops_truncatus AGCAAAGGGATAA---TATGCTATTAC-CAAAAAA-TCTCATGCACATTGATAAT---AAGGATTC-----AGAGGA--- -------AATGTTAACTA---GACTTACTGAGGTGGTCATTTCACA--AT------------ATATACAAA-ATTGAATT ATTATATTGTTCACCTAAAACTAATGTA-------ATGTCAATTATATCTGGAAAAAAAAAAAAACTACAAAAAAACCCA AACTGCCACCAC---------CACCAATA---AAGAACTCAGTGG---AAAAAAA---TGGGCAAAAGTTACAGATAACT CATAAATGATAATTTTAAATGGCTA >Equus_caballus AGCAAAGGAGTAA---TATATTATTAT-AGAAAAA-TCCCATACAAATTGATAAT---AAGAACTC-----AAAGGA--- -------GATGTT-ACTA---GACTTATTGTGCTGGTCATTTC-----------------------ACAAATATTGAATC ATTATATTGCATACCTGAAATTAATATATTGTTATA-GACAACTGTATCTC------------------AAAAAAAATCA AACTACCACCAC------CAACAACAAAA---AAGAACTCAGGGG---AAAAA-----TGGGCAAAAGTTATGAATAATT CACAAATGATGATTTTAAATGACTA >Tapirus_indicus AGCGAAGGAGTAA---TACATTTTTAT-AGAAAAA-GCCCATACAAATTGATTAT------------------------- ----------------TA---GACTTATTGTGGTGGTCATTTCACA--AC------------ATATACAAATACTGAATC ATTATATTGTACATCTGAAACTAATATATTGTTATATGTCAACTGGATCTCAATTAAAA----------AAAAAAAATCA AACCACCACCACTACTATCAACAATAAAA---AAGAACTCA--GG---AGAAAAA---TGGGCAAAAGTTATGCATAATT GACAAATGATGATTTTAAATGGCTA >Myotis_myotis AACATAGGAGTAATACTACATTATTAT-TTAAAAA-CCCCATAAAAATTGA---T---AAAAACTCAAGAGAAGAGA--- -------GAGGTTAACTATTTAAACTACTGTGGTGGTCATTTCACAATAT------------ATATATAAATCTCAAATC ATTATATTGTATACCTGAAACTAATATAATGTTATATGTCAATTATACCTCAATTTAAA----------GAAAAAAATCA AACCACCACCAC------CA------------CCAACCTTA--GA---AAAAAAA---TGGGCAAAAGTTATAGATAATC CCCAAATGATGATTTTAAGTGGCTG >Rousettus_aegyptiacus AACATAGGGGTAA---TACATTAG----AAAAAAA-TTCCATACCATTTGATAAT---AAGAACTC-----AGAGAA--- -------TGAGGTGATTATTTAAC-TACTGTAG-GGTCATATCATAGTATTGTATAATAATAATGTATAAATATCAAATC ACTATATTGTACATGTGGAACTA------------ATGTCAATTATATTTAAATTCAAA----------GAAAATAATCA AACCACCAACAA------AAATAACAAAA---AGGAACTCA--GT---AAAAAA----TAGGCAATAGTTACGGATAATT CACAAATAATGATTTTAAATAGATA >Condylura_cristata AGCAAAGGAATAA----------TTAC-------A-TCCCATATAATCTGATAGT---AAAAATCC-----AAAGGT--- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------AGAAAAA---TGGGCAAAGGTCTGAGACACTT T----------ATTTCAGATGACTA >Solenodon_paradoxus AGTAAA-----AATGCTAGTTTATTA--GAGAAAA-TTCTATACAAATTGAAAAT---AAGAACCA-----GAAGGG--- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------AAAAA-----TGGGCAAAAGTTACAGCTAATT CAAAACTGATGATTTTAAGTCACTA >Homo_sapiens AGCAAAGGAGTAA---TACCTTATGGT-AGAAAAA-TCCTATACAAATTGA---T---AAGATCTC-----AAAGGA--- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------AAAA------TAGGCAAAAGATACGGACAATT TACAAA-AATGATTTTAAATGGTTA Dog432_LINE >L1_CARN7_3END -------------------------------------------------------------------------------- TGGTGATCACTTCACAATGTATACAAATGTCGAATCACT--ATGTTGTACACCTGAAACTAATATAACATTGTATGTCAA TTATACTCAAAT----AAAAAAA--------------------------------------------------------- --------------------- >Canis_familiaris TCATGTAAC---TCATC---CAAATTAGGATACTTTTGAAAGCA----AGAGTGCTGTAA----ATCATTAAGCCAA--- --------------CAATATATACAAATGTCAGATCATT--ATGTTATACACCCTGAACTAATATAATGCTATATGTCAA TTAGACCTCAAT----AAAAAAA---T-CATTAAGCCTA---GACAACATAAGTAAATTGTGA------CTAGT--TTTA GACC--CTTTCATCCAATTCC >Felis_catus TCATGTAAC---TCATC---CAAATTAGGATACTTTTGAGAGCA----AGAGTGCTGTAA----ATCATTAAGCCAA--- --------------CAATATATACAAATGTCAGATCATT--ATGTTGTACACCTGAAATTAATACAATGTTACATGTCAA TTATACCTCAAT----AAAAAAA---A----CAAGCTTA---GACAACATGAGTAAACTGTGACTAGTCTTAGT--CTTA GACC--CTTGCATCCCACTCT >Manis_javanica TCATGTAACTTATCATC---CAAATTGGGACACTTGTGAGAGCAGAAGCCAGTGAAGTTA----GTCATTTAG-CAG--- --------------CAAGAGATATGAACGTCAGATCATT--ACGTTGCACACCTGAAACTAATATAATGTTGTATATCGA TTCTATTGCAAG----AAA-------------AAGCCCA---G--AGCATGAGTAAACTATGACTGTTGCTAGT---TTA GACT--CTTCCGTCCCACTCC >Sus_scrofa TCATCTCAC---TTATC---CAAATGAGGACACTTTGGAGACTGACGGAGAGTGCTGTTA----ATCATTAAGCCAA--- --------------CAATGTATACAAATATTGAATCATT--ATGTTCTACACCTGAAGCTAATATAATGTT---TGTCAA TTAAACCTCAGT-TTAAAAAAAA---ATCATAGAGCCAA---GACA---TGAGTAAACTGTGACTGTCTCTAGT---GTT AACT--TTCCCATCCCATTGC >Bos_taurus TCATATAAC---TTACC---CAAATTAGGACACTTTTGAAAGCAAAGGAGCGTGCCATTA----ATCATTAAGCCAA--- --------------CAATG-ATACAAATATTGAATCATT--ATGTTCTACACCTGAAACTAATAAAATGTT---TGTCAA TTATACCTCAATTTTTAAAGAAA---TCCATTAAGCCAA---GACA---TGAGGAAATTGTGACTGTGTCTAGT---TTT AACT--CTCCCGCCCCACACC >Equus_caballus TCATATAAC---TTATCA-CCAAATTAGGACACTT--AAGAGCAAAAGAGAATGCTGTTA----ATCGTTAAGCTGA--- --------------CAATCTGTATAAATAGCAAAAC-----ATGCTGTACACCTGAAACTAATGTAATGTTATATGTCAA TTAGACCTCAGT----GAAAAAA---TTCATTAAGGCTA---GATAACCTGAGTAAATTGTGACTGTCTCTGGT--TTTA GACT--CTT-CATCCCACTCC >Ceratotherium_simum TCATATAAC---TTATCATCCAAACTAGGACACTTTTGAGAGCGAAAGAGAGTGCTGTTA---CATCATTAAGCCAA--- --------------CAATATATACAAATATTGAAACATC--ATGTTGTACACCTGAAACTAATATA--------TGTCAA TTATACCTCAAT----AAAAAGA---ATCATTAAGCCTA---GACAACGTGAGTAAATTGTGACTGTCTCTGGT--TTTA GACT--CTTCCATCCCACTCC >Myotis_myotis TCATATAAC---TTATC---CAAATTAGGACACTTTGGAGAACTAAAGAGAGTGCTTTTA----ATCATTAAGCC-A--- --------------CAATATATACGAATAT-GAATCATTATATATTTTACACCTGAAATTAAT-----GTTACATGTCAA TTGTAGCTCAAT----TAAAAAC---TTCATTAAGCCGA---GATAACATGAGTGCATCGTGACTAGC--------TTTA GAGT--CTTCCATCC-ACTCC >Rousettus_aegyptiacus TCATATACT---TTATCATCCAAATTAGGGCACTTTTGAAAGAAAACGAGAGTCCAGTTG----ATTATTAAGCCAG--- --------------CAGTGTATACAAATATCAAAGT-----ATATTGTGCAACTAACATTAATGTAATGTTA--TGTCAA TTATACCTCAAT----GAAAAAA---TTTATTAAGCCAA---GGTAACATAAGTCCATTATGACCATTTCTAGT--TTTA GACT--CTTTCATCCTACTCC >Condylura_cristata TT-TGTAAC---ATAGCACCCAAAGTAGTATGTGCTTGAGCCTGAGAGGTA-----GTT--------------------- -------------------------------------------------------------------------------- --------------------------ACCATTAAGCCA----G-CGTAAGGAGAAAAGTACGACT--------------- --------------------- >Erinaceus_europaeus NNNNNNNNNNNNNNNNNNNNNNNATTAGGATAATTTTGAAAGCTAAAGAGA--GCCATTA-------------------- -------------------------------------------------------------------------------- --------------------------ACCA-AAAGTCAC---AGTACCTAGAGTAAATT--------CCCAAGT---TTA GGT---ACCCCATCCTATTCC >Homo_sapiens TCATATAAC---TTATC---CAAATTAGGACACTTTTGAGAATGAAAGAGAGTGCTATTA-------------------- -------------------------------------------------------------------------------- --------------------------GCCATTAAGCCAA---AACA--AGGAGTAAATTGTGACTGTCCCAAGCAAATTG GATG--TGTGG---CCACTCC Dog433_LINE >L1_Carn7_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------TTTTTTTATTTGAGTATAATTGACATACAATGTT-ATATTAGTTTCAGGTGTAC AACATAGTGATTCGACA-TTTGTATACATTGTGAAGTGATCACCACAATAAGTCTAGTTACCATCTGTCACCATACAANG TTANTACAAT------------------ATTATTGA-------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------CTATATTCNCCATGC------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------- >Canis_familiaris GCTAATATCTAGG----------------------CACACAT-TACCTATATATAGTTA------GAAACTTAGAAATAT ATAT----------A----------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------TATATTTTGAAAGTCCTCTCTGATGACTGTGGCCCA---GGCACTC- ------TGTTC---CTCT------------TTAACAGAGGTAAAATTGACTTATAACTTC------ACATTCAGGTGTAC AGGATAAAGATTTGATA-CTTGTCCACATTGTGAAATGAC-------GTGAGTCCAGTTAAC---TGTCATCGTACATGG TTACAGAA---------------TTTCTTGTAATGA-------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------C--TTTTAAGAT-----------GGCACTCTGTTC---TTAT--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------GAATG-------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------CTTTTCCTT-----------------CTGAGAGCCCATTTATT >Felis_catus GTTCATAACTAGG----------------------------------CATACACA----------TGTACCTAGATGTAT TTAGTGATGGAAGCA----------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------TTTACTTTGAGAGTCCTCTCTAATGACTGTAGTGTA---GGCACTC- ------AGTTC---CCTTTTT---------TTAACTGAGGTAAAATTGATCTCTCACCTT---ATTAGTTCCAAGTGTAC GACATAATGATTTGATA-TTGGTATGCATTGTGA------CATCTTGGTAAATCT-----------GTCACCGTGCATGG CTACGACACT------TTTTTTTTTTCTTGTGATGACTTTTGTTTTTTATGTTTATTTATTTTTGAGGGAGCGATAAGAG ACAGAGCGTGAGCAGGGGAGGGGCAGAGAGCGAGGGAGACAGAATCTGAAGCAGGCTCCAGGCTCTGAGCTGTCAGCACA GAGCCGGATGCAGGGCTCAAAACCACAAATTGTGATATCACGAACTGTGAGATCATAACCGACCGAGCCACCCAGGCGTC CGTCCCTCTTGTGATGAC--TTTTAAGGT-----------GGCACTCTATTC---TTAT--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------ATATG-------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------CTTTTCCTT-----------------CTGAGAACCCATGTATT >Manis_javanica GCTAATAACTAGA----------------------TAGGCAC-C---------------------------------CAT GTGC----------C----------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------TGTGTTTTTTAAGTCAACTCTAATGACTATAGCCAA---GGCACTG- ------TGTTC---TTT--------------------------------------------------------------- ---------------------------------------------------------TTATC---TGTCACCATCCATAG TTACA-------------TTTTTTTTCTTGTGATGT-------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------C--TTTTAAGAT-----------GGCACTCTGTTC---TTAT--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------ATACA-------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------CTTTTCCTC-----------------CTGAAAACCCATTTATC >Sus_scrofa GTTAATAACTAGG------------------------------CACACACACACAC---------CCCACCCAAATATAT GTAG---------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------TATTTGAGGATCACCTTTAATGACTTTAGCCTC---AGCACTC- ------TGTTC---TTTTCCT-TGTTTTAAAAACTTGAGGTGTAATTGACATACAGTGTTAATGTTAGTTTCAGGTGTAC AGCAC-------TGATA-TTTCTATACATTGCAAAACAGTCACCACAATAAGTCTAGTTAATACCCATCGCCATATGTAG TTAGAACAATTTCTCCCCTTGTTTTTCTTGTGATGA-------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------GAGGAC----TTAACAG-----------GGCACTCTGCTC---TTCT--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------ATCTG-------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------TTTTCCTT-----------------CTGAGAACCCATTCATT >Bos_taurus GTTAATACCTGGGAGTGTGTGCATACGTGCATGTGCATGCGTGCACACACACACA----------CACACCTATAAATGT GTAG---------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------TTTTTGAGAATTATCTTTAATGACTTCAGTCTA---GGCACTC- ------TGTGA---TTTTTCT-TGTTTTTAAAAACTGAGATGTAATTGTTACATAAT----ATATTAATTTCAGGTGTAC AACAT---GATTTGATA-TTCATACACATTGCAAAATGGTCACCATAGTAAGTCTAGTTAATATCCATCACCA-ACATAG TTAGAGCAGT-TTTTCTCTTTTTTTTCTTGTGTTCA-------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------GTACTTTTTTAACAT-----------GGCACTCTGTTC---TTAA--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------ATGGCTTCCCTTGTAGCTGAGCTGGTAAAGAATCCGCGTGCATTGTA GGAGACCTGAGTTAGATTCCTGGGTCAGGAAGATTCCCTGAAGAAAGAAATGGCAACTCACTCCAATATTCTTGCCTGGG AAAGCCCATGGACAGAGGAGCCCCGCGGGCTACAGTCCATGAAATCACAGAGGATTGGACACGACTGAGCTACTGACACT TTCGCTTCACTGTTCTTAAATATGCTCCTCCTT-----------------GTGAGAACCCATTTATT >Equus_caballus GTTAATAACTAGG--------------TGTACTCACACACACACACACACACACA----------CTCACTCACTCATAT GCACACCCCTGTATA----------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------TACGTTTTGAGAGTCATCTTTAATGGCTTTAGCCTA---GGCACTC- ------TGTTC---TTTTTTTAAAAAAATTTTTATTGAGGCATAATTGACATATAAC----ATATTAGTTTCAGATGTAC AATGTAATGATTCGATACTTTGTATACACTGTGAAATGATCACAACGGTAAGTCTAGTTAACATCTATCACCATACA--- -----------------CTTTTTTTTCTTGTGATGA-------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------GAAC--TTTTAAGAT-----------GGCACTCTGTTC---TTATATAGTGTTGAACCGCGTAAGG ACGTTTCAGTCAATGACGGACCGCATATACAATGGTGGTCCCATAAGATCAGTACCATATAGCCTAGGTATGTAGTAGGC TGTATCATCTGGGTTTGTGTAAGTGCACTCTATGATGTTCGCACAATGACAAAATCGCCTAACGATGCATTTCTCAGAAT GTATCCCTATCGTTAAGTGATGCAGGAC--TGTATG-------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------CTTTTCCTT-----------------CTGAGAACCCATTTATT >Ceratotherium_simum GTTAATAACCAAGCATACTCACTCACACACACACACACACACACACACACACACACACACACACACACACACACACATAT ATAC-CCCTATTATA----------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------TATTTTTTGAGAGTCATCTCTAATGGCTTTAGCCTA---GGCACTC- ------TGTTC---TTTTTTT-AAAATTTTTTTATTGAGGTATAATTGACATATAGCCTT-ATATTAGTTTCAGGTGTAC AACGTAATGATTTGAT------------------------CACCACAGTAAGTCTAGTTAACATCCATCACTATACA--- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------TGTAGCCTAGTTGTGCAGTAGGC TATACCATCTGGGTTTGTGTAAGTACACTCTATGATGTTCGCACAACGACAAAATCGCCAAACGATGCATTTCTCAGAAC GAATCCCTGTCGTTAAGCAATGTATGATGGTATATG-------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------CTTTTCCTC-----------------CTGAGAACCCATTTATT >Myotis_myotis GATAATAACTAGC----------------------CATGCATATAGACAGACACA----------CACACATA------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------TTTTTGAGTGTCATCTCTAATGACTTCAACCTA---AGCCCTT- --AAACGGTTT---TTTTTTT---------------GAGGTATAATTGATGTACATT----ATATTAGTTTCAGTTGTGC AACATAATGATTTGATA-TTTGTATACATTGTGAAATGATCACCACAATAAGTCTAGTTAACATCTGTCACCTTATGTGG TCATAAAATGTTTTTTTCTTTTTTTCCTTGTGTTTA-------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------GGAC--TTTTAATAT-----------GACACTCTGTTT---AT----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------G-------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------CTTTTCCTT-----------------TTGGGAATCCATTTATT >Rousettus_aegyptiacus CTTAATAACTAGG------------------------TGCACACACACACACACA----------CACACATACACACCT GTATTG-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------TCTTTGAGAATCATTTCTAATGA--TCAGCCTA---GGGACTTA AAAAAATATTT---T-TTATTGAGGTATAATTTATTGAGGTATAATTGACATGTACCATT-CTATTAGTTTCAGATTTTC A-CATAATGATTTGATA-TTTGTATACATTGCAAAATGATCACCACACTAAGTCTAGTTAAC----ATCACCATATATAG TTATAAAATT-TTTTTATTTTTTTTTCTTGTGTCAA-------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------GGAC--TTTTAAGAT-----------GGCATTATTTTT---AT----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------ATAAG-------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------CTTTTTTTTTTTTTTTTTTTTTTGGTCTGGGAACCCATTTATT >Condylura_cristata GGTAATAACTAGG------------------TTTTCTTACACACACACAAACACAAGAGCCC---CACCCCCACACCCCT GGGT---------AA----------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------TGTTTTGTGAGAGGCCTCTTTAATGTCTTCAGCTCA----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------GGAATTATGTCT---T------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------AAATG-------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------CCTTTTCTT-----------------CTGGGAAGGC-TTTATT >Solenodon_paradoxus GATAATAACTAGT------------------CTTACATACACACCACACCACCACCACCTAT---AGCCATGTAATAGAT AGATAATATGTATATTTAAAAGCGAGAATGGGAGAAGAGGAAGAAACTTTTTTTTTTAAGGAAAGTTCCTTTTTTAAGGA AAGGATATAGAGAATGGTTGCTTATTTGTGAGGTGACTAGAACAGAGTTCAGTTCTGTGTATATATTTTTAATATCAATA GGATACCCTAGTAGTTCTAAAGTTAAGTAGACATCAGAACCCATAGAGCAAAAGCAAGTTTAACAATGGAACATTAGAAG GATAGGAGTGAAGGTGAGTAGACAGGCAGGCAGGCAGGCAGAAGAGGAAGAAGCGTTTTATTTAGTTGTTCACATTGGTT GCTTTCCCTAGACTGGACATAGGACTCAAGCCCAGGGGTATGTTGGTTTGCTTCTTTGGAGGTGATTGATCTAACTGCTA CTCCACCAGGGTGCACTGGAAGAAACATTTTTTTTAGGAAGGAAAAGGAGGAGCAAGCACTTTTATTTGTTTATTTTTGG TGGTGTTCCCCAGCCCCAGGTTGAGAAGCCAGATCCTTGGGCTTTACACTGTCTGTGACCCAGCCTCCAGCTAAGCCCCT GGGTTGCAAGAACCTGCCTATCTGTTTTTTTTTTTTTTTCTGAGAATCATCTCTAATGAAATCAGCCTA----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------GTCATTCTGTTC---TTATAT------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------ATATG-------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------CTTTTTCTT-----------------CTGAGAAGCA-TTTATT >Homo_sapiens GTTAATAACTAGGCATGCATGTGCACGTGCATGTGCACTCTCTCTCACACACACACC--------CCCCCCTATATACAT ATAT----------A----------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------TGTTTTTTGAGGGGCATCTTTAGTGATTTCAGCCTG----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------GGTACTCTGTTC---TAAT--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------ATATG-------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------CTCTTCCTT-----------------CTGAGAACCCATTTACT Dog434_LINE >L1MA9_3END -------------------------------------------------------------------------------- ----------------------------------------------ATGGTGGTTGCCAGGGGCTGGGGGGTGGGGGAAA TGGGGAGATGTTGGTCAAAGGGTACAAAGTTTC-------AGTTATGCAGGATG-AATAAGTTCTGGAG-ATCTAATGTA CAGCATGGTG--ACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTA-GATCTTAAGTGTTCTCA CCACACACAAA--AAAA--TGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTG-GTAATCATTTCACAA TGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCA------------------- ATTATACCTCAATAAAGCTGGAAAAA------------------------------------------------------ ---------------------------- >Canis_familiaris TCTCACTTTGCAAGCAACATAC-ATGTGTCAGCATGCACTATG------------------------------------- ---------------ATGAGTCT---AAAATGGGATGGGG-------------------------------TGGCGAAAA T-GGGTGAAGGGGATCAAAAGGTACAAACTTAC-------AGTTATAAAATA---AGTAAGTCATGG---ATGTAAAATA TAGCGTG-----ACTATCCTTAACAACGCTGTATTGCATATCTGAAGGTTGAGAAAAGGGTA-GATCTTAAGAGTTCTCA GGATAGGAAGA--AAACTTGTGTAACTATATATGGGGACAG--ATGTTACATAGACT---TATT-GTGATCATTTCACAA TATATATACATATCAAATCATTATTTTGTACACTTGAAACTAATACAG-TGTCATATATCG------------------- ATTATACCTCAACA-----GGAAAAA-----TACAGTAAGTGGGGTTTAGAGA---TATCTGGAATTTTTCTTATAT-GT TCC-AGGAATCCTTGGAACTATAGAGGG >Felis_catus CCCCACTTTTCAGGCAACATACTAT-TGTCTGCATGCACTATG------------------------------------- ---------------GTTAGTCT---AAAGTGGGATGGGGGGC------------------A---------TG---GAAA T-GGGAGAAGGGGATCAAAAAGTACAAACCTCCA------AGTTATAAAATA---AATAAGTCATGGAG-ACGTTATGTA TAGCATGATG--ACTATAGTTAATAGTACTGTATTGGATATTTGAAGGTTACTAAGAGGGTAGGATCTTAAAAGTTCTCA TGATAAGAAGA--AAAACTTTGTAACTACTTATGGGGACAG--ATGTTAACTAGTCT---TATT-ATGATCATTCCACAA TATGTATAAATATCAAATCATTATGTTATATTCTTGAAACTAATATAA-TGTTATACATC-------------------- ATTATACTTCAACA-----GGAAAAA-----TAAAAT---------------A---AATGGGGAATTTTTCTTATAA-GT TCCAAGGAATCCTTGGAACTATAGAGGG >Manis_pentadactyla CCTCACTTTGTAGCCAACATACTATATGTTTGTAGGCACTATT------------------------------------- ---------------ATTAGTCT---GAAATGGGATTGGGGG-----------------------------TGGTTGAAA T-GGGTGAAGGGGATCAAAAGGTACAAACTTTC-------AGTTATAAAATA---AATAAGTCATGGGGAATGTAATGTA CAATATAATGCAACTACAGCTAATAATAGTCTACTGCATATTTGAAAGTTGCTTAGAGAGTA-GATGTTAAAAGTTCTCA TCACAAGAA----AAAATTTTGTAGCT--GTGTGGCAATGG--ATGTTAACTAGACTTACTGTG-GTCATCACTT-GCCC TATGTACAAATATTGAATCATTACGTTGCACACATGAAACTAATATAA-TGTAATAT-TTG------------------- ATTATACTTCAATA-----GAAAAAAA----TAAAACG---GGGGTTTATGGA---TATCTGGAATTCTTCTTACAA-GT TCC-AGGAATCCTTGTAACTATAGAGGG >Sus_scrofa TCTTACTTTGCAAGTAACGTAC--TGTGTCTGCATGCACCATT------------------------------------- ---------------GTTAGTCT---AAAATGAGGTTGGAGGT------------------G---------TGGGTTAAG T-GGGTGAAGGAGAGCAGAAGGTAAAAAATTCC-------AGTTATAAAATA---AATAAATCATAGGG-ATGTCATGTA CAGCATGGTG--ACTATAGTTAATGATATTGTACTGCATGTTTGAAAGTTGCTTAGAGAGGA-GTTCTTAAAAGTTCTCA TAAAAGGAAAA--AA-----TATAACTGTGTATGGTTATCC--ATGTTAACTAGACTTATTGTG-GTGATCATTTTGCAG TATGTACAAGTATCAAATCGTTATGTTGTACACCTGAAACTAATATAT-------GTATCA------------------- ATTATACCTTAATA-----GAAAAAA-----TAAAAT----GGGGTTTAGGAA---TATCTGGAGTTTTACTGACAA-GT TCC-AGGAATCCTTGGAACTCTTGAGGG >Tursiops_truncatus CCTCATTTTGCAATCAACATACTATGTGTCTGCATGCACTATTGTTAGTTTTCTTTCCTTTTTTTTAAAAAAAATATTTA TTTATTTGCACTATAGTTAGTTT---AAAATTGGGTTGGAGGA------------------G---------TGGGTGAAA T-GGGTGAAGGAGATCGGAAGGTAAAACATTCC-------AGTTATAAAATA---AATA--TCATGGGG-ATGTAATGTA CAGCATGGTG--ACTATAGTTAATAGTATTATATTGCATATTTGAAAGTTGC---------------TTAAGTGCTCTCA TAACAAGGAAA--AAAA---TGTAACTGTGTATGGTAATCA--ATGTTCACTAGACTGACTGTG-GTGATCATTTTGCAG TATATACAAATATCAAATCATTATGTTGTATACCTGAAACTAATATAA-------GTATCA------------------- ATTATATCTCAATA-----GAAAAAA-----TAAAAT----GGGGTTTAGGGA---TATCTGTAATTTTACTTACAA-GT TCC-AGGAATGCTTGGAACTGTAGAGGG >Equus_caballus CTTCACTTTGCAAGCAATATACTGTGCATCTACATGCAGTCCT------------------------------------- ---------------GTTAGTCT---AAAATGGGATGTGGGGA------------------GGTTTGGGG-TGAACGAAA T-GGGTGAAGGGGATCCAGAGGTATAAATTCCC--------ATGATGA-------AATAAGTCAGGGG--ATGCAGTGTA CAGCATGGTG--ACTATAGTTAATAGTGCTGTATTGCATATTTGGTAGTTGCTAAAAGAGTA-GATCTTGAAAGTCCTCA TCACAAGAAAAATAAAATTTGGTAACTCTGTATGGTGACAA--ATGCTCG----------TGTC-GTAATCATTTCACAA TATATACAAATAGCAAACCTTTATGTTGTACACCTGAAACTAATGTAA-TGTTATACATCA------------------- GTTATACTTTAATA-----GCAAAAA-----TAAAAT----AGAGTTTAAGTA---TATCTGGAATTTTTCTTACAA-GT TCC-AGGAATACTTGGAACCAAAGTGGG >Ceratotherium_simum CCTCACTTTGCAGGCAACATACTATGTGTCTACATGCACTATT------------------------------------- ---------------GTTAGTCT---AAAATGGGATTTAATAG------------------GGTTTGGGGTTGGGCGAAA T-GAGTGA-GGGGATCAAAAGGTACAAACTTCCCTTATTTATTTATAAGATA---AATAAGTCATGAGG-ATGTAATGTA CAGCATGGTG--ACTATAGTTAATAATACTGTATTGCATATTTGGTAGTTGCTAAGAGAGTA-GATCTTAAAAGTCCTCA TCACAAGAAAAATAAAATTTTGTAACTATGTATGGGGACAG--ATGCTAACTAGATTTATTGTG-GTGATCATTTCACAA TAGATACAAATATCAAATCTTTATGTTGCACACTTGAAACTAATATTA-TGTTATATACCA------------------- ATTATACCTTAATA-----GAAAAGA-----TAAAAT----GGAGTTTAAGGA---TATCTGGAATTTTTCT-ACAAGGT TCC-AG-AATCCTTGGAACCATTGAGGG >Myotis_myotis CCTCACTTTGCAGGCAGCATACTACATGTCTACCTTCACTATT------------------------------------- ---------------GTTAATCT---AAAATGGGGTTTGGAGG--------------------TGTGGGTGTGGATGAAG T--GGTGATGGGGATCAAAAGGCACAAAGTTCT-------AGTTGGGGAA-----AAAAAATCATGGGG-ATGTAATGTA TAGCATGGTG--ACTATAGTTAATA---CTGTATTGCATATTTGAAAGTTGCCAAGAGAGTA-GATCTTAAAAGTTCTCT TCACGAGAAA---AAAAAATTGTAACTACAGGTGGTGATGG--ATGTTAACTAGACT---TGTGAGCGATCATTGCACAC TATATACAAATATCAAATCATTATGTTGTACATCTGAAACTAATATAA-TGCTACATATCA------------------- ATTATACCTTAATA-----GAAGAAA-----TAAAAT----AGTGTTT-GGGG---TATCTGGAATTTGTCTTACAT-GT TTC-AGGAATCCTTGGCACTATAGAGGG >Rousettus_aegyptiacus CTTCACTCTTCAGGCAACTTACTATGTGTCTA-ACGCCCTACT------------------------------------- ---------------GTTAATCC---AAAATGAAGTTTGGGGT------------------GGGGTGGGAGTTGG-GAAA T-GAGTGAATGGGATCAAAAGGCACAAACTTCC-------AGTTATAAAATATTTAATAAGTCATGGGG-A-----TGTA CAGCATGGCG--GTTATAGTTAATAATACTATATTGCATATTTGAAAGTTGTTAAGA---TA-GATTTCAAAAGTTTTCA TCACAAGAAAA--AGAATTTTGTAACTATGTATGGTGACGG--ATACTAATTAGATC---TATG-GTGTCCATTTCACAA TACATATGAATATCAAATCATTATGT-----ACCTGAAACTAATATAA-TATCAACTAATATCTCTGAAACTAATATACT ATTATATCTCAATC-----GAAAAAAAA---TAACAT----GAGCTTTAGGGA---TATCTGGAATTTTTCTCACAA-GT TTC-AGGAATCCTCAGAACTATAAAGGG >Condylura_cristata CCTTGCTTTGCAGGCAACACACTATGTGTCT------------------------------------------------- ---------------ATTAATGT---AAAATGGGTTTTAGGGA------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------AACCTGGTATTTTTCTTACAA-GT TCC-AGGAATCCTTGGAATTATAAAGGG >Sorex_araneus TCCCACTTTGCAGACAGCACATAGTGTGTCTACT---------------------------------------------- ---------------GCTAATCT---AAAATGAG-TTTAAGGA------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------TACCTGTAATTTTTCTTATAA-AC TCT-ATGAACCCTTGGATTTAGTAAGAG >Homo_sapiens CCTCACTTTGCAGACAACCTACTATGCGTCTGCATGCACCACT------------------------------------- ---------------ATTAGTCT---AAAATGAGGTTTAGGGA------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------TGTCTGGAATTTTTCTTACAA-GT TCC-AGGAATCCTTGGAGTTAGAGAAGG Dog435_LINE >L1_CARN7_3END ---------------------------------------------------------------------GTANTAACNTT GTAT--GGTGAC-AGATGGTAACTA---GACTTATTGTGGTGATCACTTCACAATGTATACAAATGTCGAATCACTATGT TGTACACCTGAAACTAATATAACATTG-TATGTCAATTATACTCAAATAAAAAAA------------------------- --------------------------------------------------------------------- >Canis_familiaris AAATTTGTAGACATATCTCTCTCCGGCCACCTGATGAAAACACAGAAGAG---AAAAATCGATCCT-----------TAC GTAT--AGTGTG-GGATGTTAACTAACTAGCTTCCTGGGGTGATTATGTCATGATATATGCAAACAGTGAATCCCTATGC TGTACACCTGAAACTGACATAAAGCTA-TCTGTCACTTA-ACCTC------------------------------AGGT- --GAGCCACAATCT---TGACCATCCCCAAATGGTAAAGAGCAGAGAAAGAAAAGA-AC-AAAAACATG >Felis_catus AAATTTGTAGACATATCTCTCTCCAGCCACCTGATGAAAACACGGAAGAG---AAAAACCCAGCCT-----------TAT GTAC--GGTGCA-GGATGTTAACTG---AACTTAGTGTGGCGATCATTTCATGATATATACAAGTAGTGAATCATTCTGT TTTACCCCTGAAACTGATGTAACGCTA-TATGTCAATGG-ACCTC------------------------------AAAA- --GAACTGCGATCT---CTACCATCCCCAAATAGGAAAGAGCAGGGAAACAAAAGA-AT-AAAAACTTG >Manis_pentadactyla AAATTTGTAGACATATCTCTCTCCAGCCACCTGGTGAAAACATGAAGGAG---AAAACCCCATCCT-------------- ------------------------------------------------------------------TCAAATCACTCTGT TGTATACTTGAAACCGGTATAATATTG-TGTATCAACTNNNNNNN------------------------------NNNN- --NNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Sus_scrofa AAATTTGTAGACATATCTCTCTCCAGCCACCTGCAGAAAACATGTAACAG---AAAAG-CCATCCT-----------TAT GTA---GGTGCT-GGCTGGGAACCA---GACTTAGTGTTGTGAGCATTTTGCAATAGATACAAATATCCAATCATTATGT TGTGCATCTGAAACTACTATAAGGTTG-TATGTCAATTATACTTCAAAAAAAAAA--------------------AAAA- --AAACCCTCACAT---TCACTATCCCTA---GGGGAAGGGCAGGGAAAGAAATGA-AC-AAAAACATA >Bos_taurus AAATTTGTAGACATATCTCTCTCCAGCCACCTGAGGGAAACATGGAAGA----AAAAGCCCATCCT-----------TAT GTGG--GATGTCGGGATGGTACCTA---AACTTAGAATAGTGAGCATTTTGCAAGAGATACAAATATCCAATCATTATAT TTTACATTGGAAGCTAATGCAAGGTTGTTACGTCAATTACACCTCAATTAAAACACACACACACACAC-------AAAC- --ACAACCTCATCT---TCACCATTTCCAAATGGGGAAT-GCAGGGAGAGAAATGA-ACAAAAAACATG >Equus_caballus AAATTTGTAGACATATCTCTCTCCAGCCACCTGATGAAAACATGGAAGAG---AAAAACTCATCCT-----------TAT GTAT--AGCTCT-GGATGTTAACCA---GACATACTGTGGTGATCACTTCGCAATATAGACAAATATCAAATCATTATGT TGTACACTTGAAACTAACATAATGCTA-TATGTCAATTATTCCTCAAT---------------------------TGAA- --AAAAAATCATCT---TCACCATCCC--------------CAGGGAAAAGAAAGA-AC-AAAACCATG >Ceratotherium_simum GAATTTGTAGACATATCTCTCTCCAGCCACCTGATGAAAACATGGAAGAG---AAAAACCCATCCT-----------TAT GTAT--GGCGCC-GGATGTTAACTA---GACTTATTGTGGTGATCACTTCACAACATATACAAATATCGAATCATTATGT TGTACACCTGAACCTAATATAATGGTA-TATGTCAATTATTCCTCAAC---------------------------AACA- --AAAAAATCATCT---TTACCATCCCTAGGTGGCGAAGGTCAGGGAAAGCAAAGA-AC-AAAAGTGTG >Myotis_myotis AAATTTGTAGACATATCTCTCGCCGGCCACCTGATGAGAACATGGAAGAG---AAACACCCAACCT-----------TAT GTATGTGGTACC-GAATATTAACCA---GATTTACTTTGGTG---ACTGCACAATATTTACCAATATCGAATCTTTGTGT TGTATGCCTGAGACTAATATAATATTA-AATGTCAATCATATCTCAATACACACACAC-----------------ACAC- --ACACACACATCT---TCACCATCCC-AGATGG---AGGACAGGGAAGGAAAAAA-A--AGAAACATG >Rousettus_aegyptiacus AAATTTGTAGACATATCTCTCTCCAGCCACCTGGTGAAAACATGGAAGGG---GAAAACTCATCCT-----------TAT GTAT--GGCGTC-AGACATTAACT--------TACTGTGGTGATCA-----CAACATTTACAAATATTGAATCATTATGT TGTATGCCTGAGATTAATGTGACATCA-TATGTCAATTACACCTCAATAACAACAAACAAACAAACAAACAAACAAACA- --AAAAACGCATCT---TTACCATCCC-AGATGGGGAAGGAAAGGGA----------AC-AAAAACATG >Condylura_cristata AAATTTGTAGACATATCTCTCTCCGGCCACCTGATGATCATATGGAAGAG------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --AAAAACCCATCC---A-GCCATCCCCAGATGGGGAAGGACAGGGAAAGAAAAAAGACCAAAAACATG >Solenodon_paradoxus AAATTTGTAGACATATCTCTCTCCAGCCACCTGATAA---CATGGAAGAG------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --AAAAACCCATCC---CCGCCATCCCCAGATGGGGAAGGACAGGGAAAGAAAAAA--CCGAAAACATG >Homo_sapiens AAACTTGTAGACATATCTCTCTCCAGCCACCTGATGATAACATGGAAGAG------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --AAAAACCCATCC---TCACCATCGCCAGATGGGGAAGGACAGG--AAGGAAAAA-GCCAAAAACGTG Dog437_LINE >L1MA9_3END --------------------------------------------------------------------------TGAGGT GATGGATATGTTAATT-AGCTTGATTGTGGTAATCATTTCACAATGTATACGTATAT-CAAAACATCACGTTGTACACCT TAAATATATACAATTTT-TATTTGTCAATTATACCTCAATAAAGCTGGAAAAA--------------------------- -------------------------------------------------------- >Canis_familiaris ATTTTCACATCTC-AAAAAATAAGATTCTTCTTTTGATATTTTTAAAC------------ATGCAAAAATT--------- -----ATACGTTAACT-AACCTTACTGCAGTAATCACTTTGCAATATATAAACAT---AAAATCACAACATTGTGTACCT TAAACTTATACAATGT--TATATGTCAATCATA-----ATAAAGCTGGAA------AAAATTTAAA---AAAT---ATTA TCAGCTCAAGAAGCATACAAAAACAGATGGTG------------------GGACAT >Felis_catus ATTTTCCCATGTC--AAAAATAGTATTCTTCATTTGATATTTTTAAGC-ATAT---AAAAATGCAAAAATT--------- -----GTATATTAACT-AACCTTACTGCAGTAATCACTTTGCAACACATACATACAT-AAAATCATAACATTGTACACCT TAAACTTACACAATGT--TACATGTCAATTATATTTCAATAAG-CTGAAA------CATATTCAAA---AACT---ATTC TTAGCTCAAGAGGCATACAGAAGCAGGTGGTGGACTGAACTTGGCTGGTGGGGCAT >Manis_pentadactyla ATTTTCACATTTA--GAAAAGGGTATTCTTCTTTTGACATCTTAAAAC-ATTT---AAAAATGCAAAATTT--------- -----GGATGTTAACA-----TTCCTGTGATAAGCACTTTGCTATATACACATAGAG-GAAATAACAACGTCATACACGT TTAACTTACACAACGT--TATTTGTCAATTGTATCTCAATAAAGCTGGAAA-----ACAATTCAGA---AACT---ATTC TTAGCTCCAGAGGCATGCAAAAGCAGATGGTGGCTCAAATTTGGCTGGTGGGTCAC >Sus_scrofa ATTTTCACATGTC--AAAAATAGTAT--TTATTTCGACATTTTTAAAC-ATTT---ATAAATGCAAAAATT--------- -----TGGTTTAATGAAAACCTTACTGTAATGATCACTTTGCAATATATACATAAAT-AAAATCACAACGCTGTATATCT TAAAGTGACACAATGTTATATATGTCAATTATCTC---ATAAAGCTGAAC------AAAATTCAAA---AACT---ATTC CTAGCTCAAGAGGCATATGAAAGCAGATGGTGGACCCAATTTGGCTGTTGGGTCAT >Tursiops_truncatus ATTTTCACCTGTC--AAAAATAGTATTCTTATTTTGACATTTTTTAAC-ATTT---AAAAATGCAAAAACT--------- -----GGAT-TTAACG-AAACTTACTGTAGTGATCGCTTTGCAATATATACCTATAT-AAAATCACAATGTTGTACATCT TAAAGTCACACAATGT--TATATGGAAATTATACCTCAATAAAGCTGGAA------AAAATTCAAA---AGCT---ATTC TTAGCTCAAGAGGGATACAAAAGCAGATGGTGGGCCGAATTTGGCTGGTGGGTCAT >Equus_caballus GTATTCACATGTCAAAAAAATAGGATTCTTCTTTTGACATTTCTAAAC-ATTT---AAAAATGCAAAAGTG--------- -----GGATGTTAAACTGACCTTCCTGTGGTGATCACTTTGCAAGATATACCTACATCAAAACCACAACATCGTACACCT TAAACTCACACAATGT--TATATGTCAGCTAGATCTCAATAAAGCTGGGAA-----GAAATTCAAG------G---ACTA TTGGCTGAAGAGG-ATACAAATGCAGATGGTGGACCAAATTTGGCTGGTGGGTCGT >Tapirus_indicus ATTTTCACATGTC-AAAAAATAGTATTCTTCTTTTGACATTTTTAAAC-ATTT---AAAAATG----------------- -----GGATGTTAACT-AACCTTACTGCGGTGATCACTCTGCAATATATACCTATAT-AAAATCACAACATTGTACAGCT TAAACTTATACAATGC--TGTATGTCAATTATATCTCAGTAAGACTGGAAA-----AAAATTCAAGCTCAAAA---ATTC TCAGCCCAAGAGGCATACAAAAACAGATGGTGGACCGAATTTGGCTGGTGGGTCAT >Myotis_myotis ATTTCCATTTATC---AAAATAGTATTCTTCTTTTGACATTTCTAAAC-ATTT---AAAAATGCAAAAATT--------- -----GG---ATAACT-AACC-TATTGTGGTAACTACTTTGCAATATACACGTGTAT-AAAACCACAG---TGTATACCT TAAACTTACACAATGT--TATATGTCAATTATATTTCAATAAAGCTG-AA------AAAATTTAAA---AGCT---ATTC TTAGCTCACGAGGCATACAAAAGCAGATGAGGGACTGAATTGGACTGGTGGGTCAT >Rousettus_aegyptiacus ATTTTCACATATC--AAAAACAGTATTATTCTTTTAACA-TTTAAAAC-ATTT---AAAAATGCAAAAATT--------- -----GG---ATAACT--AACTTATTGCAGTAATCACTTTGTAACATATACTTGTAT-AAAATCACAA---TGCGCACCT AAAACTTACACAGT----TATAAATCAATTATATCACAATAAAGCTTAAC------AAAAATTAAA---AGCT---ATTC TTAGCTCAGGAGGCATACAAAAGAAGATGGGAGACCAAATTTGGTGGGTGGGCCAC >Condylura_cristata AGTTT-ATGTGTC--AAAAATAGTATTCTCCTTTTGACTGTTTTCTGC-ATTT--------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------AAAAATTCAA---ACCT---ATTC TTGCCTCAAGAGGCATAGGAAAGCACATATTGAATGGAATTTGGCAGGGCTACCAT >Sorex_araneus ATTTTCATGTGTC--ACAAATAGTATTTTTCTTTTGATTTTCCCCAACAATTT--------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------AAAAATGGAAA--AATC---ATTC TTGGCT--------------------ATGGGGTTCCAAAAATGGGAG-TAGGGGGT >Homo_sapiens ACTCCTACCTGTT-ACAAAAGAGTATTCTTCTTTTAACATTTTAAGAC-ATTT--------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------AAAAATGTAAA--AACC---ATCC TTAGCTCAAGAGCCATACAAAAGCAGATGGTGGACTGAATTTGGCAAG--AGCCAT Dog439_LINE >L1_CARN7_3END -------------------------------------------------------------------------------- -------------------------------TTTTTTTATTTGAGTATAATTGACATACAATGTTATATT---------- ----AGTTTCAGGTGTACA--ACATAGTGATTCGA-CATTTG-TATACATTGTGAAGTG---ATCACCACAATAAGTCTA G-TTACCATCTGTCACCATACAANGTTANTACAATATTATTGACTATATTCNCCATGCTGTACATTACATCCCCATGACT T------------------------------------------------------------------------------- --- >Canis_familiaris GCAATGACAATC-TCTTCATTCAAAACATTCTTGGGTTTGGTTCTATTAC----AACTA---TTTTTATAGTT------- GTTAGGT---TTTTTT---CTTCCT-------TTTTTTATTTAGGGGTAATTGACATATGACATTATGTTGCATTTTCAG GTGGAGTTTCAGGTGGACA--ACATTACAATTCAA-TATTTGTTATGTATTATGAAATG---ATCACCACAGTAAGTTTG GTTTAACATCTGTCACGACACACAG-------AGAATTGTTCTTTTTTTTTCTCGTTGTAGGAACT--TGTAAGAT---- ----TTCCTGTAGCTGTTACT---TTGATG-----GCATCAGCTGATGCCAAGAACTGGACTGATT-TGATGCAAAA-AA TTG >Felis_catus --------------------------CACCCCTGGGTTTGGTCCTACCAA----AATCA---TTTTTATAGTT------- GTTAGTT---TTTCTT---CTTCTTCTTCTTCTTTTTTATTGAGGTGTAACTGACAAACAACATT--------------- ----AGTTTCAGGTGGACA--ACGTAATGATTCAA-TATTCG-TGTATGTTGTGAAATG---ATCACCACAGTAAGTCTA G-TTAACATCCATCACCACACACGGT---TATAGAATTA------TTTTTTCTTGTGGTAGGAACT--TTGAAGCT---- ----TTACTGGAGTTGTTAGT---TTTATA-----GCATTAGCTGATGTCAAGAATTGAACCCATC-TGATGCAAGG-AA CTG >Manis_javanica GCAAAGGCAATC-TCTTTATTCAAAACACTCTTAGGTTTGGTTCTATTAC----AACCG---TTTTTGTAGTT------- GTGAGAA---CC---------------------------CTGAGGTATAGCTGACATAC---ATTTTATT---------- ----AGTTTTAAGTGTACAATATATAATGATTCAG-TATTTG-CATATAATGCAAAATG---ATTGCCACACTCAGTCTA G-TTAACATCTGCCACTATACATAGT---TACAGAACTT------TTTTTCCTTATGGTGAGAACT--TTTAAGAT---- ----TTACTGTAGCTGTCAGT---TTTAAA-----AGATTAGCTGATGTCAAGAGCTGCACTGATTGTGACACAAAG-AA TTG >Sus_scrofa GCAGTGGCAATC-TCTTTATTCAAAACGTTCTTAGGTTTCATTCAATTAC----AACCA---TTTTTGTACTT------- GTTAGTT---CTTTTATCTTCTCTT----TTTGTTGTTGTCGAGGGATAACTGATATACAGCACTATATT---------- ----CGTTTCAGGTGTACA--ACGTAATGATTCAA-TACTGG-TATAAACTGGGAAATG---ACCACCACAATAAGTCTG G-TTAACATCTGTCACCATACATGGT---TAGAGAATT-------TTTTTCCTTGCCATGAGAACG--TTTACGAT---- ----TCACTGTAGTTGCCCGG---TGCTTA-----GCATTGGCTGCCGTCGAGAATTGAACCGATC-TCATGAAAAACAA TTG >Bos_taurus GCAATGACAATG-TTTTTATTTGAAACATTTTCAGGTTTGGTTCTATTGT----AACTA---TTTTTGTAGTT------- GTTACTT---CTCTTTATCCTCTTT----ATCTTTTTTATGGAAGTATAATGGACACACCACATTATATT---------- ----AGTTTCAGGTGTACA--GCATAACAATTTGATTATTTG-TATATATTGGGAAATG---ATTGCTACATTAGGT-TA C-TTAACATCTGTCACCATCCATAGT---TACAGAATT-------TTTTTTCTTGTGAAGAGAAGT--TTTAAGAT---- ----TTATTGTTGTTGTCAGT---TGTATAGAATTGAATTGACTGATATCAAGAACTGAACTGATT-T----TTAAA-AA TTG >Equus_caballus GCAATGTCAATC-TCTTTATTCAAAACATTCTTAGGTTTGGTTCTATTAC----AACCA---TTTTTGTAGTT------- ---AGGT---TTTTTC---TTCCTT-----TTTTTTAAATTGAGGTATAATTGATCTACAACATTATATT---------- ----AGTTTCAGGTGTACA--ACATAATAATTTGA-TATTTG-CATATATTGAGAAATGATCATCACCACAATAAGTCTA G-TTAACATCTGTCACCATACATAGC---TACAGAATT-------TTTTTTCTTGCGATAAGAACT--TTTAAGAT---- ----TTACTGTAGTTT---GT---TTTATA-----TCATTAGCTGATATCAAGAATTGAACCAATC-TGATACAAAG-AA CTG >Ceratotherium_simum GCAATAGCAATC-TCTTTCTTCAAAACATTCTTAGGTTTGGTTCCATCATAATAAACCA---TTTTTGTAGTT------- GCTAGGT---TTTTTT---CTCCTT----ATTTTTTTTATTGAGGTATAATTGATCTACAACGTTATATT---------- ----AGTTTCGGGTGTACA--ACATAATGATTTGA-TATTTC-TATATATTGAGAAATG---ATCACCACAATGAGTCTC G-TTAACACCTGTCACCACACATAGC---TACAGAATT-------TTTTTTCTTGTGATGAGAACT--TTTAAGAT---- ----TTACTGTAGTTGTTAGT---TTCATA-----GCATTAGCTGATGTCAAGAATTGAACCAATC-TGATAAAAAG-AA CTG >Myotis_myotis ACAATTGCAGTC-CCTTTATTCAAAATATTCTTAGGTTTGGTTCTATTAC----AGCCA---TTTTT-TAGTT------- GTTAGGC---TTTTTT---TTTTCT----TCCTTATTTTTGGAGATATAATTGACATGCAACATTATATT---------- ----AGTTTCAGGTGTA-A--ATATAATGATTTTA-AATTAG-TATATATTGTAAAATG---ATCACCACAATAAATCTA G-TTAGTACCCA---------------------------------TTTTTTCTTGTGATGAGAACT--TTTAAGAT---- ----TTACTGTAG-TGTTAGC---TTTATA-----GCACTAGCTAATGTCAATAATTGAACCAAAC-TGGTACAATG-AA TTG >Rousettus_aegyptiacus ACAACGGCAATA-CCTTTATTCAAAATATTCTTAGATTTGGTTCTATTAC----AACCA---TTTTTGTATTT------- GTTAGGA---TTTTTTTCCTTCCTT-------ATTTTTTCTGAGATATAATTGCCATACAAGATTATATT---------- ----AGTTTCGGATGTATA--ACATAATGATTTTA-TATTAG-TATATACTGTGAAACA---ATTACTACAATAAGTCTA G-TTAATATCCACCACCAAATATAGT---TACCAAAT--------TTTTATCTTGTGATGAGAACT--TTTAAGAT---- ----CTACTGTAGTCATTAGT---TTTATA-----GTACTAGGTGATGTCAAGAACTGAACCAATC-TGATACAAAG-AA CTG >Condylura_cristata GCAATGGCAAGC-TGTACATGCAATACATTCTTAGGTTTAGTTCTACTGC----AACTC---TTTCTGTAGTCCAGTAGA GTTG-GC------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------GTCACA-----GAATTAACTGATGTCAAAAACTTATCTGATC-TAATACAAGG-AA TTG >Solenodon_paradoxus GCA-----AATC-TCTGTATTCAAAACATTCTCTGGTTGAGTTCTGTTAC----AACCA---TTTTTGTAGTT------- TCTA-GT------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------TTGACA-----GCATTAGCTGATGCCAAGAAGTGAACGGACC-TGATACAAAG-AA CTG >Homo_sapiens GCAATGGTGATCTTTTTTATTAAAAAGAGTCTTAGATTTGGTTCTATTAC----AACCA---ATTTTGTAGTT------- ---A-TT------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------TTTATA-----ACATTAGCTGATGTCAAGAATTGAACCCATC-TGATACAAAG-AA CTG Dog440_LINE >L1MA9_3END ---------------------------------------------------------------------------TTTTT CCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATT---TAAGGTG----TACAACGTGATGTTTTGATAT ACGTATACATTGTGAAATGATTACCA--------------------CAATCAAGCTAATTAACATAT------------- ------------------------------------------------------------- >Canis_familiaris GAACCATGA-GAATAATTACTTGCTTCTCTATTTGTCTTCTAAAATAAACG---TGGAAAATTC--TTTTTC------CC CCAAGTTTATTGGCATATAATTGACACAT-AACCTCATGTGAGTC---GAAGGTG----TGCAATGTGCTGATTTGATAC AC--ATATATTGCAAAATGATTATCA--------------------TAAAAAGGTT--------------TGGAAAGTCG TTTTC---TTGACAAGGTTT-AACATGTGAAAATGATGTCATGCAGAAATAGGGT--GAGA >Felis_catus GAACCGTGA-GAACAGCTACTTGTTTCTCTACTTGTCTTCTCAGATAAATG---TGGAAAATTC---TTTTC------CC CCAGGTTCATTGAGATGTAGTTGCCACAT-AACATTGTGTAAGTC---GAAGTTG----TGCAGCGTGGTGATTTGATAC AC--GTATATTGCAAA------ACCG--------------------TCATAAGGTT--------------CAGAAAGTCC TTTCC---TTGACCGATTCT-AACATGTTCAAAGGATGTCGTGCCGAAATAGGACAAGGGA >Manis_pentadactyla GATCTGTGA-GAATAA------GTCCGTTTCTCTGTCTTCTAAAAGGCATG---TGGAGAGTGC--TTTCTC------CC CCAGCTTCACTGAGATATAACTGACATCT-AGGATTGTGTAAGTC---TAAGGTGTATATACAATGTGGTGATTTGATAC AGGTATATATTGCAAAACGACTACCA--------------------CAATAAGCTT--------------TGAAAAGTT- GTTTA---TTGACCAATTTT-AACCTGTTAAAATGATATCATGCAAAAATAGGACAAGGGG >Sus_scrofa GAACTGTGA-CAAGAAGCCAAAATTTCTCTGTTTGTCTTCTACAACAAGCG---TGCAAAGTTCTTTTGTCC------CC CTAGCTTTACTGAGATA-AACCCATATGG-GATGCGGTAACAGCTTAGTAAGACG----GACATCGTGATGATTTGATAC ACGCATATGTTGCAAAGTGATCATCA--------------------CAATAAGGTG--------------TGGAAAGCAG GTTCA---CTGACCAACTTT-AACTTGTGAAACGGATGTCACACAGAAGTGGGTCAAGGGA >Tursiops_truncatus GAACTGAGAGTCAGAACCCATTATTTCTCTGTTTGTT--------CAAATA---TGGAAAGCCT-TTTTCTC------CC CTAGCTTTATTGAGATATAACTGAGC-------------TAAGTC---TAAGGTA----TACATCATGATGATTTGATAC ACGTACATACTGTGAAATGATTACCC--------------------CGGTGCCGTG--------------TGGAAAGGTG TTTTC---TTCACCAATTTT-AACTTGTTAAAATGATGTCATGCAGAAATAGGTCAAAGAA >Equus_caballus AAAC--TGA-AAATAGCTACTTGTTTCTCTATTTGTCTTCTA----AAATG---TGGAAAGTTC--TTTTTT------TC CTAGCTTTATTGAGATGTAATTGACATTT-AACATTGTGTAAGTC---TAAGGTG----TGCCATGTGATGATTTGAAAC ACACACGTATTGCAAAATGATTACCA--------------------CAATAAGGTT--------------TAGAAAGATC TTTTC---TTGACCAATTTT-AATATGTTAGAATGATGTCATGCAGAAGGAAGACAAGGGA >Ceratotherium_simum GAACCGTGA-GAATAGCTACTTGGTTCTCTATTTGTCTTTTAAAGTAAATG-----GAAAGTTC-TATTTTT------TC CTAGCTTTATTGAGATATAATTGAAATAT-AACATTGTATAAATC---TAAGGGG----TACAACTTGGTGATTTGATAC ACGTATATATTGCGAAATGATTACCG--------------------CAATAAAGTT--------------TGGAAAGTTC TTTTC---TTGACCAATTTT-AACATGTTAAAATGATGTCATGCAAAAATAGGAGAAGGAA >Myotis_myotis GAACTTTGAGAATTAATTACTTGTTTCTCTATCGGTCCTCTAAAAGGATTG---TGGAAAGTTC--TTTTTG------CC CCAGTTTTACTGAGATATAATTGACACAT-AACAT-GTATAAGTC---TAAGGTG----TACCACATGGTGATTTGATAC ACATGTATATTGCAAA-TGATTACCAGTATATATTACTGTATATTGCAGTAAGGTT--------------TGGAAAGTCC TTTCC---TTGACCAGTTTG-AACATGTTAAAATTATGTCCTACAGAAATGGGACAAGGGT >Rousettus_aegyptiacus GAACGGTGA-GAATTAACTACTTGTTCTCTCTTTGTCCTCTGAAATAAATG---TGGAAAGTTC---TTTCT------CC CCAGCTTTAGTGAGACGTAATTGCGATAT-TACGTTGTGTGAGTC---TAAGGTA----TACCACGTGACGATCGGATAC ACGTATAGATTGCAAAATGATTACCA--------------------TAGTAAGGTT--------------TGGAAAG--- --TTC---TTGACGGGTTTT-AACATGTTAAAATGATGTCATGCAAAAGTGGGACAAGGGA >Condylura_cristata CAATTCCGT-GAATAGCCAAGTGTGTCTCTATTTGTTTTTTAAAATAAATG---TGGGAAGTTC---TTTTC-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------TTGCCCAATTTT-AACTTGTTGAAATGATGTTGGGCAGAAAT-GCACAAGGGA >Sorex_araneus TAACTGTGA-GAATAGCTGATTGTTTCTCTATTTATCTTTGAAACTTAATG---TGGAAATTTC---TGTTC-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------TTGACCAATTTTCAAGACATTGAAAAGATCTCAGCCAGAAATAGGACGAAGGA >Homo_sapiens GAACTGTGA-GAATAAC----TGTTTCTCTGTTGATTCATGAAAGTAAATG---TAGAATGTTC----TTTC-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------TTGACTAATTTT-AGCATGTTAAAATGATGTCATGCAGAAACTGGACAAGAGA Dog441_LINE >L1_CARN7_3END -----------------------------------------------------------------TTTTTTTATTTGAGT ATAATTGACATACAATGTTATATTAGTTTCAGGTGTACAAC-ATAGTGATTCGACATTTGTATACATTGTGAAGTGATCA CCACAATAAGT---CT-AGTTACCATCTGTCACCATACAANGTTA----------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------ >Canis_familiaris AAAGTAATTAAAACCAAGTCCCTT-TTTATATGGCATGTAAAATTAAAA---CTATTTTTTT------TCAAATTGAGAT ATAATTGACATATAACGTTATATTTGTTCCAGGTATACAAC-ACAGTTATTCAATATAAGCACACATTATGAAATGATCA CTATGGTAAGTCTACTTACCTAACAT------CCAT------------CTAG---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------TTTTTT---GATGATAGAAAG---AAGAGAT GGGACAGAAAGAAAAAAATAAGTGATTTCC >Felis_catus AAAGTAATTAAAACCAAGTCCTTT-TAT-TACGGCACTTGAAGTTAAAA---CTAGTCTTTT--------AAGTTGAGAT ATAATTGACATATAACATTTTATTATTTCCAGGTATACAAC-ATGGTGTTGCAATATAGGTGTATACAGTGAAACGATCA CCACAATGAGTCCAGTTAACTAACAT------CCAC------------CTAA---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------TTTTTT---GATGATAGGAAG---AAACGAT GGGACAGGAAG-AAAAAATGGGTGATTTCA >Manis_pentadactyla AAAGTAATTAAAAGTAAGTTCTTT-TT--TATGGTATTTGAAATTAAAA---CTAGTTTTTA--------AAATTGAGAT ATAATTGACATAAAACATTATGTTAGTTTCAGGTGCATAAA-ACAATAAT------TATATATATATTTTAAAATGATCA CCATAATAAGT---CT-AGCAAACAG------CCAT------------CTAG---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------TTTGTG---GATGACAGGAAGGAGAAGAGAT GGGACTGAAAC-AGAAAATTAGTTGTTTTA >Sus_scrofa ACAGTAATTAAAACCAAGTCCTTT-TT--TATGGTATTTGAAATTAAAA---CTAGATTTTT--------TAATTGAGAT GTAATTGACATAT-----TACATTAGTTTCAGGTGTACAAAGACAATGATTCAACAT--GTCTGAATTGCAAAATGATCA CCACAATAAGT---CT-AGTTAACAT------TCAT------------CTAGTTTTTT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------TTTTTT---AATGGCAGCAAGGAAAAAAAAT AGGTCTAGGAC-AAAAAATGGGCCATTTCA >Tursiops_truncatus AAAAAAAAAAAAACCAAGTCCTTT-TT---ATGGCATTTGAAATTAAAA---CTCGTTTTTT--------AAATTGAAAT GTAATTGATATAG-----TACATTAGTTTCAGGTGTACAAC-ACAATGATTCAATATGCGTCTGTACTGTGAAATGATCA CCACAGGAAGT---CT-CGTTAACAT------CCAT------------CTAG---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------TTTTTT---GATGATAGCAAGGAGAAGAGGT AGGACTAGAACAAAAAAATCGGTCATTTCA >Equus_caballus AAAGTCATAAAAACCAAGTCATTT-TT--TGTGGCATTTGAAATTAAAA---CTACTTTTTA--------AAATTAAGAT ATAATTGACATATAA---CATATTATTTTCAGGTGTACAAC-ACAATGATTCAATATATGGATATATTGTGAAATGATCA CCACAATAAGG---CT-AGTTAGCAT------CCAT------------CTAGTCTTTTTTTTTTTTAAAGATTTTATTTT TTTCCGTTTTCTCCCTAAAGGCCCCCGGTTCATAGTTGTATATTCTTAGTTGTGAGCCCTTTTAGTTGTGGCACGTGGGA TGTTGCCTCAACATGGCTTGATGAGCAGTGCCATGTCCACTCCCAGGATTCGAACTGGTGAAACCCTGGGCCGCTGCAGC AGAGTGCGTGAACTCAACCACTCAGCCATGTGGGCCGGCCCCCATCTAGTCTTTT---GATGACAGAAAAGAGAAGAGAT CAGACAGGAAC-AAAAAATGGGTCATTTTA >Ceratotherium_simum AAAGTAATGAAAACCAAGTCATTT-TT--TATGGCATTTGAAATTAAAA---CTACTTTTTA--------AAATTGAGAT ATAATTGAAA-ATAA---CATATTATTTTCAGGTGTACAAC-ACAATGATTCAATATATGTATCTATTGCAAAATGATCA CCACAACAGGC---CT-AGTTAACAT------CCAT------------CCAA---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------TTTTTT---GATGATAAAAAGGAGAAGAGAT AGAACTGGAA--AAAAAATGGGTCATTTTA >Myotis_myotis AAAGTAACTAAAACCAAGTCC-TT-TT--TATGACATTTGAAATTAAAA---CTAGCTTTTT--------TAATTGAGAT ATAATGAACA--------TATATTCATTTCAGGTTTAAAAC-ACAATGATTGAATATGTGTATATACTGTGAAATGATCA CCACAATAAGT---CTCAGCTAACAT------CCAC------------CCAG---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------TTTTTT---GATGATAGGAAGCGGAAGAGAT GATACTGGAAC-AAAAACTGGGTAATTTCA >Rousettus_aegyptiacus GAAGTAATTAAAACCAAGTCCTTT-TT--TATGGCATTTGAAATTAAAA---CCAGTTTTTT--------TTTTTGAGAT ATAATTGACACATAACATTATATTAGTTTCAGGTGTATGAC-ACAATGATTCAATATGTGTATATATAGCTAAATGATCA CCAAAATAAGT---CT-AGCTAATAT------CCAC------------C------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------TTTTTT---GATGATGATAAGAAGAAGAGAT CGGATTGGAACAAAAAAATAGTTCATTTCA >Condylura_cristata GAAGCAAGTAAATTCAAATCCTTTCTCTAAATGACATTTGAAAAGAAAA------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------CTGG---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------GATTTT---AATGATAGGTTGTAGGAGAGA- GGGACTGGAAC-CAGAGATGGATCATTTCA >Uropsilus_gracilis AAGACAATGAAAGCCAAGTCCTTTCTCTACATGACATTTGAAATGAAAA------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------TCAG---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------GAAATT---AATAATAGGCAGTAGAAGAGAT GGGAGTGGAAT-GATAAATGGGTAATTTCA >Homo_sapiens AAAGCAACTAAAATCGAGTACTTT-TTTTTATAGCTTTTGAATATAAAA------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------CTGGGGGG------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------GGCACA---GTTGGCAGTTGGAAGAAGACAT AGGACTGGAAC-AAAGAATGTGTCATTTCA Dog442_LINE >L1_CARN7_3END -------------------------------------------------------------------------TGTATGG TGACAGATGGTAACTAGACTTATTGTGGTGATCACTTCACAATGTATACAA------ATGTCGAATCAC----------- ------TATGTTGTACACCTGAAACTAATATAACATTGTATGTCAATT---------ATACTCAAATAAAAAAA------ --------------------------------------------------------------------------- >Canis_familiaris TTGGTTTTT--------CCATTTTTAAA-TGATGGAAGAA--ATTCTGAGCTCATGGGGGC---TCAAAA---------- ----AGGGTGTAACTAGATTTATTGTG---ATCATTTTGCAATAGATACAG----------TGACTC------------- -------AGGTTATATGCCTGAAATTAATGTAACGTTATAGGTCAATT---------ACATC---------------ATA AT----------TTAAAAAAAA---ATAGGCAGTAGGCTAGATAAGGCCAATGAGCCATGTTTTGCCATCCCATA >Felis_catus TTGGTTTTA--------CCTTTTTTAAA-GGCGAGAAAAA---TTCTTAGCTCGTGGGGCT---TCAAAA---------- -----AGGTGTACCTAGATTTATTGTA---GTCATTTTGCAATAGATACAGGGGCGCATTGCAATTTGCATACAGCGCAA GAGATACATGTTGTACACCTGAAACGAATGTAATGTGCTAGGTCACTT---------ACATC---------------TTC AT-----------TTTTGAAAA---GCAGGCATCAGGCTAGATAGGGCCAGTGAGTCGTGTTTTGCCATCCTGTG >Manis_pentadactyla TTAGTGTTT--------CCATTTTTATA-TAGTTAAAGAA----GATTAGCTCATGGGGAT---TCAAAA---------- -----GGATGTAAT--GGTTTATTGTG---ATCATTTTGCA-TATATACAA------ACATCGAGTC------------- ----------ATGTACACCCGAAAC---------ATGTTGTGTCAATTCTTTTGTCGATTTC---------------TTA ATTATTATGTCAATTTTTACGA---ATGGATGGCAAGCTAGATTTGGCCAATGAGCCATAGTTGGCCAGCCCCTG >Sus_scrofa TTACTTTTT--------CCATTTTAAAG-TGGTTGAAAAA--ATTCTTAGCTTATGGGAGT---TCAAAA---------- ----GGGATATAACCCAACTTAGTGTGGTAATCATTTAATAATAAG--CAA------ATAGGAAATC------------- -------ACAGCGTACACATGAAATTAAC---ATGTTATATGTCAATT---------ATATC---------------TCA AT-------------AAAAGAA---ACAGGTGGCAGGCTAGATGTGGCCAATGAGCCATGGTTTGCCAAGCCCTG >Tursiops_truncatus TTCTTATTT--------TTATTTTAAAA-TGTCTGACAAG--ATTCTTAGCTCATGGGAGT---TCAAAG---------- ------GATGTAACTGGATTTATTGTA---ATCATTTCCTAATATG--CAA------ATAGCAAATC------------- -------ATGTTGTACACGTGAAAC-------ACATTATATGCAGGTT---------ACACC---------------TCA AT-------------GAAAGAA---ACAGGT---AGGCTAGATTTGGCCAATGAGTCATCATTTGCCAATCCCTG >Myotis_myotis TGATTGGTT---TTTTTCATTTTTTACA-TGGTTTAAAAA--TGTCTTAGCTCATGGGAGC---TTAAAA---------- ----ATGATGTAACTAGATTTACTGTGGTGATCATTTTGTAATATATACAA------ATCTTAAATC------------- -------ATGTTGTACACGGGAAGCTAATATAATGTTATGTGTCAATT---------ATATC---------------TAA AAAAAAAAAACAACAAAAAAAA---ACAGGTGTCAGGCTAGAGTTGAGCAATGA-CCACAATTTGCCAATCCCTG >Rousettus_aegyptiacus TTGGTTTTT--------CTATTTTTAAA-TGGTTGAAAAA--AATCTTAGCTCATGGAAGT---TGAAAA---------- ----AAGATGTAACTAGATTTATTGTAGTGACCATTTCACAATATGTACAA------ATATCAAATC------------- -------ATGTTGTACACCTGAAACTAAT-----GTTATATGTCAATC---------ATATC---------------TC- ---------------AAAAAGA---ATAGGTAGCA---------------ATGAGCCATGATTTGTCAATCTCTG >Condylura_cristata NNNNNNNNNNNNNNNCATCATTTTAATA------GAAAAATCATTCTTAGCTCAAGGAGGT---TCAAAG---------- -----GAATATGACTAGACTTACTGCAGTC----CTTTGCAGCCCCTAGAA------ATACTGAATC------------- -------ATCTCATACTCTGGAAAGTCA------AAATTATGTCAATT---------ACTTC---------------TTT AA-------------AAGAAAA---AAAGCTGGAAGACTGGATTTGGATAACAGGCCCTAGTTTGCCGACCCGTG >Sorex_araneus TTGGTTTTT--TTTATACCCTTTTAAAAATGG---GAAATCCATTCTTAGCTCCTGTGAGT---TCATGA---------- ----CAAAGCTAATAAGATTTATTGTGGTGCACATTTT-CAGTATATACAA------ATATTTAAAC------------- -------------GGCCTCTGATGCTAATACAATATTATATGTCAATT---------CTGTA---------------TG- ---------------AAAGAAA------------GGGCTGCTTTTGGTTTGTGGGTCATAGTTTCTCAAGCCCTG >Equus_caballus TGATTTTTT---TTCAACCATTTAAAAA-TGG---AAAAACCATTCTCAGTTCACAGGAGT------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------TC- ------------------AAAA----CAGGCGGCAGGATAGATTGGGCCCATGGGCCATAGTTTGCCAACCCCCG >Ceratotherium_simum TGATTTTTT----TCAACCATTTAAAAA-CGG---AAAAACCGTTCTTAGCTTATAGGAGT------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------TC- ------------------AAAA---CCAGGCAGCAGGCTAGATTTGGCCCGTGGGCCATAGTTTGCCAACCCCTG >Homo_sapiens TGCTTTTTTTTTTTCAACCATTTAAATATTGG---AAAAATCATTCTTTGCTCGTGGGAGT------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------TC- ------------------AAAA---GCAGGCAGCAGGCTAGATCTGGTCAATGGGCCATAGTTTGACAATCCCTG Dog443_LINE >L1_CARN7_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------TTTTTTTATTTGAGTATAATTGACATACAATGTTATATTAGTTTCAGGTGTACAAC ATAGTGATTCGACATTTGTATACATTGTGAAGTGATCACCACAATAAGTCTAGTTACCATCTGTCACCAT---------- ------------------------------------------------------------------ >Canis_familiaris TATACTCAGTCATGTT-AAAAT---------------------------------------------------------- ---------------------------------------------------------------TCAGTTAAAATAAATTC A------------------------------------------------------------------------------- --------------------------------------------------------AACCAACCTAAAA-----CAATGT TTTTTCT-TTT------GAAAAAAATTTTA-AGTGAGGTAAAACTGACATACAACATTATATTAGTTTCAGGTGTACAAC ATGATAATTCAGTATGTGTATATACTGTGAAATGATCACCTTAATAAGTC-----AACATCCC----------AAAGTTC TTTCTTTTCT---GGGGTGATTGTACTTTTCAGTATCTTGATAGAGGCATGTGTCACATTACTGTA >Felis_catus TAAAGTCAGCTGTGTTGAAAAT---------------------------------------------------------- ---------------------------------------------------------------TCAGTCAAAATAAACTC A------------------------------------------------------------------------------- --------------------------------------------------------AGGCAA------------------ CCTTTCT-TCTG-----AAAAAAACTTTTC-ATTGAGGTAAAACTGATCTATAATGTTATATTAGCTTCGGGTGT---AC ATGATAATTTGATATTTGTATATACTGAAAAACCACCATCATACTAAGTCTAGTCGACATTCA----------AAAGTTG TTTCTTTTCT---GGAGTGATTGTATTTTTCTGTATCTTGATAGAGGCACGTGTCACGCTAGTGTA >Manis_pentadactyla TATATTCCGTCATGCT-AAAAT---------------------------------------------------------- ---------------------------------------------------------------TCAGTTAAAATAAACTG A------------------------------------------------------------------------------- --------------------------------------------------------ACCCAACCTTATA---AAAAAGGT CCCT----TCTT-----AAATTCTTTTTTT-ATTGAAGTATAATTG--ACATAACATTATATTACTTTCAGGTATACAAC ATAATGATTTGATAAACATATGTATTGTGAAATGATCACCATGATAAGTCTAGATGACAT-CA----------AGAATTA TTTTCTTTCT---TGGGTGACAGTATTTTTCTGCATCTTGATTGAGGTGTACATTATGCAGGTGTG >Sus_scrofa TATATTCATTCATGTT-AAAATTAAATAAAATAAGAGCTCTTTTGTGGCACATCAAGTTAAGGATGCAGTGTTGTTACTA CAGCAGCTCGGGTCAATGTTGTGGCATGGGTTTAATCCCTGGCCCAGGAACGTCTACATGCCATGAGTTGAAATAAATTC AGACCTACCCTTTTTTTTTCCCCCACAGCTCATGGAAGTTCCTTGGTCAGGGATTGAAACTGTGCCACAGCAGTAACTAG AGCCACAATAGTGATAATGCCAGATCCTTAACCTGCTGAGCCACCAGGGAACTCTAAGCCAACCCTTAA------AATTT CCATTT--ATTT---ATTATTATTATTTTA-ATTGAGATATAATTGACATAGAACCTTACATGAGTTTTAGGTACATAAC ACAATGATTCAATATTTGTATATGTTGTGAAATGACCACCATAATAAATCTAGTTAACATCCA----------AAAGCTG TTTCCTTTCT---GGGGTGATACTATTTTTCTTTATTTTGATAAAGGCATGAATCACACAGAAGTA >Tursiops_truncatus TATATTCAGTCATGTT-AAAAT---------------------------------------------------------- ---------------------------------------------------------------TCAGCTGAAAAAAATTC A------------------------------------------------------------------------------- --------------------------------------------------------AGCCAACATAAAA------AATTT CCTTTC--ATTT-----ATTAATATTTTTA-ATTGAGATATAATTGATATATAAACTTACATTAGTTTCAGGTATA-AAC ATAATGATTAGATACTTGTATGTATTGTGAAATGATCACCATAGTAAGTCTAATTAACATCCA----------AAGGTTC TTTCCTTTCT---GGGGTGATAGTGTTTTTCTTTATCTTGATAGAGGCATGTGTCGCACAGGTGCA >Equus_caballus TATATTCAGTCATGCC-AAGAT---------------------------------------------------------- ---------------------------------------------------------------TCAGTTAAAATAAACTC A------------------------------------------------------------------------------- --------------------------------------------------------AGCCAGCCTAAAA------AAAAT TCTTT---TTTC-------ATTATTATTTT-ATTGAGGTATGAGTG--ATATAACATTATCTTAG-TTCAGGGGTACAAC ATAATGATTCGATATTTGTATGCATTGTGAAATGATCACCACAATAAGTCTAGTTAACATCCA----------AAAGTTC TTTCC-TTCT---GGGGTGATAATATTTTTCTGTATCTTGATAGAGGCATGTGTCACACAGGTGTA >Ceratotherium_simum TATATTCAGTCACGCT-AAGAT---------------------------------------------------------- ---------------------------------------------------------------TCAGTTAAAATAAACTC A------------------------------------------------------------------------------- --------------------------------------------------------AGCCAACCTAAAA------AAAGT TTTTCTT-TTTT-----TAATTATTATTTT-ATTGAGGTATAATTG--ACATAACATTATATTAG-TTCAGGGGTACAAC ATACTGATTCGATATTTGTATCTACTGCAAAATGATCACCACAATAAGCCTAGTTAACATCCA----------AAAGTTC TCTCCTTCCT---AGGGTGATAATATTTTTCTGTATCTTGATAGAGGCTTGTGTCACACAGGTGTA >Myotis_myotis TATATTAAGTTATGCT-AAAAT---------------------------------------------------------- ---------------------------------------------------------------TCAATTAAAATAAACTC A------------------------------------------------------------------------------- --------------------------------------------------------AGCCAAACTAAAA------AATTC CT------TTTT-----ATATTTTTTTTTGTATTAAAGCATAGTTGACAT--GACATTGCTTTATTTTCAGGTGTAAAAT ATAATGATTTGGTGTTTGTATACTATATTATAAAATGATCACAAGAAGTCTAGTTAATACCCC----------AAAGTT- CTTCCTTTCT---GTTGTGATAATATTTTTCTGTATATTGATGGAGGTGTGCATCACACAGGTGTA >Rousettus_aegyptiacus TATATTCAGTCATACT-AAAAT---------------------------------------------------------- ---------------------------------------------------------------TTAATTAAAATAAACTC A------------------------------------------------------------------------------- --------------------------------------------------------AGCCAATCTAAAA----GTAAGTT CC------TTTT-----AAAGTTATTTTTA-ATTGAGGTATAGTTGATATAAAACATCATTTTGGTTTCAGGTATATAAT ATAATGCTTTGATATTTGTATAGATTATGAAAAGATTACCACAATAAGTCTAGTTAATATCCA----------AAAGTTA TTTCCCTTAT---GGGGTGATAGTATTTTTCTGTATCTTGATAGAGACATGCATCACATAGGTGTA >Condylura_cristata TATAGTCAGTCATGCT-AAAAT---------------------------------------------------------- ---------------------------------------------------------------TCATTTAAAAAAAACTT G------------------------------------------------------------------------------- --------------------------------------------------------AGCCAAGCTAAAA-----CAAAGA TCATTCTTTTCT-------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------GTGGTGATAGTAATTTTCTGCATTTTGATAGGTGCATGCATCACACAGGTGTA >Solenodon_paradoxus TACATTCAGTCACGCT-ACAAT---------------------------------------------------------- ---------------------------------------------------------------TTAGTTAAAATAAATTC A------------------------------------------------------------------------------- --------------------------------------------------------AGCCAACCTAAAA-----AAA--- --GTTCTTTTCT-------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------AGCGTGAGAGTATTTTTCTGTATCTTGACTGACG---------------TGTG >Homo_sapiens TATATTCAGTCATGCT-ACATG---------------------------------------------------------- ---------------------------------------------------------------TCAGTTAAAGGAAACTC A------------------------------------------------------------------------------- --------------------------------------------------------AGCCAACCTAAAA------AATGT TCCCTCCTGTCT-------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------GGGCCAAGGCTATTTTTTTGTATCTTAAGAGAGGCATGTGTCACACAGGTATA Dog444_LINE >L1_CARN7_3END -------------------------------------------------------------------------------- ---TTTTTTTATTTGAG-TATAATTGACATACAATGTTATATTAGTTTCAGGTGTACAACATAGTGATTCGACATTTGTA TACATTGTGAAGT------------------------------------------------------------------- ----------------- >Canis_familiaris CCTAAACCATTCCTTC-----ACTATAAAGA-----GGGAAACTGAGAACCATAAAGCTT---C-ATATAACTGATATTT --------TTATTTGAAATATAATTAACATATAACACTATATTATTTTCAGTTGTACAACATAACAATTCAATATCAATA CAA-------------CATAGGACTGATTTTT---ATAAGA----TTCTTGCCTTATTTTGATTTTACTTTG-------- CAAGTCTTTTCAAAGAC >Felis_catus CCTAAACCATTCCTTT-----ACCATAAAGACAGGAGGCAAACTGAGAACCAAAAAGCTT---C-ATAGGAGTGTTATTT -----------TTGGAAATATAATGGACGTGTAACATTATGTCACGTTCATGTGTAAAATATAATGACTACATATTTGTA TAA-------------CATAGGACTGCTTTTT---CTAAGG----TT-TTGCCTA-TTTTT-TTTAATCTAC-------- CAAGTGTTTTCAAAGAC >Manis_pentadactyla CCTAAACAATTCATTT-----ACTATGAAG----ACGAGAAACTGAGAACCACAAAGCCT---C-ATATGACTGATTTTT -------------TCGGAGATAATTGGCAT---ACATTATATTAGTTTCAGCTGTACAGCATAATGACTCGTTATATATA CAA-------------TATATGACTGAATTTT---ATAAGG----CCATCGCCTTGTTTTG-TTTTACCTGC-------- TGAGTAGTTTCGAAGAC >Sus_scrofa CCTAAACCATTCCTTT-----ACTATGAAGG--GGAGGGAAATTGAGAAACCAAAAGCCT---C-ACATAACTAATTTTT -------ACAAATTGAGATATAACTGACATATAACACCCTATTAGTTTCAAGCATACAACATAATGCTTCATTGTTTGCC TAA-------------CATATCATTGCCTTTT---ATAAGG----CTACTATCTTATTTTG-TTTTACCTGC-------- CTACTGTCTTTAAAGGC >Bos_taurus GCTTAACTATTTTTCT-----ACTACGAAGA--GGAGGGAAATTGAAAACCCCAAAGCCC---TTATAAAACTGATTTTT -------ATAAATTGAGATGTAATTGACAT-----ATTACATTAGTTTCAAGTATACAACATAAAGCTTCAATGTTTGCA CAA-------------CATATTCTTGATTTTT---ATAAGGCTACTTACTGTCTTATTTTG-TTTTACCTGC-------- TATGTGTTTTCAAAGGC >Equus_caballus CCTAAACCATTCCTTT-----ACTATGACGT--GGAGGGGAATCGAGAAGCAAAAGGCTT---C---ATGACTGATTTTT --------TAAATTGAGACATAATTGACATATAACATTATATTAGTTTCAGGCATATAACGTAATGATTCAATATTTGTA TGA-------------CATATGAATGATTTTT---ATAAGG----CCATTGCTTTATTTTG-TTTTACCTGC-------- CACGTGTTTTCAAATGC >Ceratotherium_simum CCTAAACCATTCCTT------ACTATGAAGA--GGAAGGAAATTGAGAACCAAAAAGCTT---C-ATATGACTGGTTTTT --------TACATTGCGATATAATTGACATACAACATTATATTAGTTTCAGGTGTACAACATAATGATTTGATATTTGTA TAA-------------GATACGACTGATTTTT---CTAAGG----CCATTGCTTGATTTTG-TTTTACCTAC-------- CAAGTGTTTTCAAAGGC >Myotis_myotis TCCAAACCATTTCATT-----ACTATGAAGA--TGAAGGAAATTAAGAACAAAAATGCCT---C-ATATGATGATATTTT ----------AATTGAGATGTAATTGACATATAGC---ATATTAGTTTCACGTATACGACATAATGATTCAATATTTGTA TAA-------------TATATGGCTGATTTTG---ATAAGG----TCATTGCC---TTTTG-TTTTGCCTGA-------- ----------CAAAGGC >Rousettus_aegyptiacus CCTAAACCATTCCATT-----ACTATGAAGA--TAAAGAAAATTGAGAACCAAAAAACCT---C---GTGACTGATTTTT --------TAAATTGAGATATAACTGAAATATAGCATTAAATTAGTTTCAGGTGTACAAC--AATGATTCAAATTTTGTA TAA-------------TATACGCCTGATTTTT---AAAAGG----CCATTGCCATATTTTG-TTTTACCTGC-------- CAAGGGTTTTCAAAGGC >Condylura_cristata CCTAGACCAGTCTTTT-----ACTTTGAAGA--GCAGAGAAATTGAGAGCTAAAA-GCCT-------------------- -------------------------------------------------------------------------------- ----------------CATATGACTGATTTTT---ATGAG-----CCGTTGCCTTATTTTG-TTTTATGTGC-------- CAAGTGTTTTCAAAGGC >Sorex_araneus CTTATATCGATCATTTAGGACACTATAAAGG--AGAGGGACACTGAGAAACAAAAAGCCT-------------------- -------------------------------------------------------------------------------- ----------------CACATGAGTGATTTTT---ATGAG-----TTATTATCTTATTTTG-TTTTACTTGC-------- CAAATGTTTGTGACAGC >Homo_sapiens CCTACATAGTCCCTTT-----ACTGTGAAGC--AGTGGAAAACCGAGAACCAAAA-CCCT-------------------- -------------------------------------------------------------------------------- ----------------CAGATGACTGATTTTT---ATAAGGG---CCATTGCCATATTCTG-TTTTACCTGCTGAGTGTT TGAGTGTTTTCAAAGGC Dog445_LINE >L1_CARN7_3END -------------------------------------------------------------------------------- --------------------------------------------------TTTTTTTATTTGAGTATAATTGACATACAA TGTT---------------------ATATTAGTTTCAGGTGTACAACATAGTGATTCGACATTTGTATACATTG--TGAA GTGATCACCACAATAAGTCTAGTTACCATCTGTCACCATACAANGTTANTACAATATTATTGACTATATTCNCCATGCTG TACATTACATCCCCATGACTTATTTATTTTATAACTGGAAGTTTGTACCTCTTGACCCCCTTCACC-------------- ---------------------------------------------------------------- >Canis_familiaris GACCAGTTTTGCTAGAGAAC-----AGGAGTTT-TAATATCCTTGATGAAAAATA---ACAGTATACA------------ ------------------------------------------TTTTT---------CATTGAGGTATAATTGACCTATAA CATT---------------------ATGTTAGTTTTATGTGTACCACATAGTGATTCAATATTTGTATGTATTG--CAAA ATGATCACCATAATGAGTCTATTTAACATCTATCACCAAATATAGTTACA------------------------------ -------------------TTCTTTCTCTTGTGATAAGAACTTT-AAGGTCT-----ACTCTC------AAAG--TGTAA TTTTT---GAT-----TTACATTATTTTCATAAAATATTATTCTGCTTTCTAATTATT-TCTCT >Felis_catus GACCAATTTTTATAGCATAC-----TGTAGT---TAATGTCCTTGATAAGAAATA---ACAGTGTAAA------------ ------------------------------------------GTTTT---------TATCAAGGTGTAACTAACATATAA CATT---------------------ATCTTAGTTTTAGGAGTACCACATAATGATCTGATATTTGTATGTGTTG--CAAA ATGATCACCATAATAAATCCAGTTAATGTATTTCACCAAGCATAGTTAAA------------------------------ -------------------TTCTTTTTCTTGTGATGAGAACTTT-AAGAT---------TCTT------AAAG--TATAA TTTTT---GGT-----TTACATTATTTTCATAGAATATTACTCTGCTTTCTAATTCTT-TCTCT >Phataginus_tricuspis GACCAATTTTTATAGAGTAC-----TGTAATTATTAGTGTCCTTGATAA-ACACA---ACAGTATAAT------------ ------------------------------------------TCTTT---------TATTGAGGTATAATTGATGAATAA CAATATTAGTTTCAGATGTATAACAATATTAGTTTCAGATGTATAACATAATGATTCAGTATTTACATATATTT--TTAA ATGATCACCACTATAGGTCTAGTTAACATCTGTTACCAAACATAAATAAA------------------------------ ---------------AATTTTTTGTTTTCTGTAATGAGGACTTT-TAAGTTC---TCTCTCTT------ACAG--TATAA TTTTT---AAT-----TTACATTATTTTCATAAACTCTTACTCTA-----TAATAATTAGTTCT >Sus_scrofa AACTAATTTGTAGAGAATGC-----TCTCATGAATTATGTCCTTGATAA-ACATA---ACAGTGTAG------------- ------------------------------------------CCTTT---------TATTGGTCTATAAGTGACATATAA CATT---------------------ATGTTAGTTGCATGTTTACGATATAATGATTTGATATTTGTGTATGTTG--CGAA ATGTTCACCACAGAAAGTGTAGTTAACATCCATCACCAAACATACTTACAAA---------------------------- -----------------AGCATTTTTCCTTGTGATAAGGACTTTTAAGATAC---TCTGTTTT------ACAG--TATAA TTTTT---AGTTTATGTTACATTATTGTCATAAACTGTTAATCTACTTTCTAATTATGATTTCT >Bos_taurus GCCCAGTTTGTAGAGTGTGC-----CACCGTTAATAATGTCCTTGAAAA-ACATA---AGAGTGTAA------------- ------------------------------------------TTTTT---------TATTGAGATATAATTGACATATAA CATT---------------------ATGTTAGTTTCAGGTGTACAATA---TGATTCAGTATTTGTATATATTG--TGAA GTGTTCACCATGGTAAGTCTAGTTATCATCTGTCACCAAGCATAATCTTT------------------------------ -------------------TTTTTTTTCTAGTGATAAGGGCTTTTAAGATCT---CGTGTCTT------ACAG--TATAA TTTTT---AGT-----TTACATTGTCTTTATTAACCGTTACTCTGCCTTCTATTTATTATTTCT >Equus_caballus GACTAATTTTTACAGAGTAC-----TGTAGTTAGTAATATCCTTGATAA-ACATA---ACAGTATAAT------------ ------------------------------------------TTTTC---------TATTGAGGTATAAATGACATATAA TAT-----------------------TGTTAGTTTCAGGTGTACAACATAATGATTCAATATTTGTATATATTG--CAGA ATGATCACCACAAT--GTCTAGTTAACAT-TGTCACCAAACATAGTTACAA----------------------------- -----------------ATTTTTTTTTCTTGTGATGAGGACTTTTAAGATAT---ACTCTCTT------ACAG--TATAA TTTTT---AGT-----TTATATTGTTTTCATAAAATATTACTCT--------ACTATTATTTCC >Ceratotherium_simum GACTGATTTTTATAGAGTAC-----TGTAGTTAATAATAGCCTTGATAA-ACATA---GCAGTATAATGTTTGTT----- ------------------------------------------GTTTT---------TATTGAGGTATAATTGACATATAA CAT-----------------------TGTTAGTTTCAGGTGTACAACATAATGGTTTGATATTTGTATATATTG--CAAA ATGATCACCACAGTAAGTCTAGTTAGCATCTGTCACCAAACACAGTTACAA----------------------------- -----------------AATTTTTTTTCTTGTCATGAGGACTTTAGAGATCT---GCTCTCTT------ACAT--TATAA TTTTT---AGT-----TTACATTTTTTTCATAAACTATTACTCTATTCTCTAATTATTGTTTCT >Myotis_myotis GACTAATTTTTATGGAGTAC-----TCTAGT---TAATGTCTTTGGTGA-ACATA---ACGGTATA-------------- ------------------------------------------TTTTT---------TGTTGAGGTAGCATTCACATAAAA TA------------------------TGTTAATTTCCTGTGTACAACATAATGATTCGATATTTATATTTATTGAAAAAA ATGATTGCCACAATAAGTCTAGTTAACATTTGTCACCAAACATAGTTACAA----------------------------- -------------------ATATTTTTCTTATGATGAGGACTTTTAAGGTCT----ACCTCTT------ACAGTTTTTAA TTTTT---AGT-----TTA-ATTATTCTCTTAAACTATTACACTACTTTCTAATTA---TTCCT >Rousettus_aegyptiacus GACTAATTGTTATAGAGTAC-----CTTAGT---TTATGTCTTTGATGA-ACATA---ACAGTATAATCAGTATAATTTT TAAGTATTTTGTTTTATTTTATTAGTTTCAACAACAATATAATTTTT---------TATTGAGGTATAATTGACATAAAA TATT---------------------ATGTTAGTTTCAGGTGTACAGCATAATAATTTGATATTTGTATATGTCA--CAAA ATGATCACCACAGTAAGTCTAATTAACATCTGTCACCAAACA--GTTACA------------------------------ -----------------ATTTTTTTCTCTTGTGATAAGTACTTTTAAAATCT------TTCTC------ACAA--TATAA TTTTT---AGT-----TTACATTATTTTAATAAGTGATTACTCTGCTTTCTAATTACCACTTTT >Condylura_cristata GGCTAATTTTTACAAAATAT-----TTCAGTTAATATTGC-CTTGATAA-ATATG---GTA-TAGAA------------- ------------------------------------------CATTT--------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------AGC-----TTATGTTATTTTCATAAACTATTACTGCACTTTCTAATTCTTTTTTTT >Erinaceus_europaeus GACTAATTT-TATACTGTAC-----AGTGCCTAGCAATGTTCTTGATAA-ACATG---ACAATATAT------------- ------------------------------------------TTTTT--------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------AGT-----TTATGCTACTTTCATAAACTATTAATCT---TTCTAATTA---TTTCT >Homo_sapiens GACAAATTTTTATAGGGTTCTGCTTTGTAGTTAATAATTTCCTTGATAA-ATATA---ATATTGCAA------------- ------------------------------------------GTTTT--------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------AGT-----TTACATT---TTCATAAAC---TATTCTATTTTCTAATTAT--TTTTA Dog447_LINE >L1_CARN7_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------ATTGTANTAACNTTGTATG-GTGACAGATGG---- --------TAACTAGACTTATTGTGGTGATCACTTCACA--ATGTATACAAAT-GTCGA-------ATCACTATGTTGTA CACCTGAAA----------------------------------------------------------------------C TAATATAA-------CATTGTA---------------------TGTCAATTATACTCAAATAAAAAAA------------ --------------------------------------------------------------------------- >Canis_familiaris TTAGGATATAA----TGTCTTGATCTGTGATTCTTAGCTCCTGGCACTAATT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------A ATAATATTTGCTTCTGATATT------AAAATAAATCTA-AA-------------CTATG--TG-GTAACACATGTTACC TTATTGTGTAGTTAGACTTATTGTGGTGATCATTTTGAA--ATATATACAAAT-ACATA-------ATCATTATGTTGTA CACCTGTAA----------------------------------------------------------------------C TAATACAC-------TGTTGTA---------------------TGTCAATTATACTTCAATTA----------------A AAATAAATAAATCTAGA---AATAGTTTCATTGAGTTTAATAAAAATTAAT----TTCCTTTATCTCAGAC-TTT >Felis_catus TTAGGATATAA-TGACGTCTTGATCTGTGATTCTTTGCATTTGGCACTAACT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------A ATAATATTTACTTCTGATATT------AAAATAAATCTC-AA-------------CTATGTATG-GTAACACATGT---- --------TAGCTAGACTTATTATGGTGATAATTTTACA--ATATTTACAAAT-TTTGA-------ATAATTATGTTGTA TACCCGATA----------------------------------------------------------------------C TAATACAA-------TGTTGTA---------------------TGCCAGTTATACTTCAATT-----------------A AAATAAATAAATCTAGC---AATAATTTCATTGAATCTAAT-AAAATTAAT----TTCCTTTATCTCAGAC-TTT >Manis_pentadactyla TTAGGTTATAAATGTCGTCTTGATCTGTGATTCTTTGCTTCTGGCACTAATT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------A ATAATGTTTACTTCTGATATT------AAAATAAATCTA-AG-------------CTATGTATA-GTAAGGGGTGG---- --------TAATTACACTCATGACAG--ATCATTTTGCA--ATATGTACAAA---------------------TATTGTA CACTTGAAA----------------------------------------------------------------------C TAATA-------------TGTA---------------------T---AATTATACTTCAGTTTCGAAAT----------A TATAAAATAAATAAAGC---AATAATTTCATTGAGTCTAATACAGATTAAT----TCCCCTTATCTCAGAC-TTT >Sus_scrofa ATTGGGCAT---------CTTGATCCATGATTCTTAGCTTCTGACAATAATTAATAGTATTTAATTCTGGAGTTCCCATC GCGATTCAGCAGAAACAAATTGGACTAGGAACCATGAGGTTGTAGGTTTAATCCCTGGCCTCACTTAGTGGGTTAAGGAT CCGATGTTGCCAGTGAGCTGTGGTGTAGGTTGCAGATGCGGCTCTGATCTGATGTTGCTGTGGCTGTGGCATAGGCTGGC AGCTGTAGCTCTAGTTGGACCCCTAGCCTGGGAACCGCCATATGCTGCAGGTGTGGCCATAAAAAGCCAAAAAAAATTAA ATAATATTTACTTCTGATATT-------AAATAAATCTA-AA-------------C--TGTATG-GTGATGGATAT---- --------TGACTAGACTTATTGTGATAATCATTTCACA--ATATACTAAAGT-ATTTATCAA---ATCCTTATGTTGTA CACCTGACAACATGTGTTATTTATCAATTATACCTCAATTTAAAAAAATCAAATAAATCTAGTGATAATTTCACTGAGTC TAATAAAAATCCTTATGTTGTACACCTGACAACATGTGTTATTTATCAATTATACCTCAATTACCTCAATTTAAAA---A AATCAAATAAATCTAGT---GATAATTTCACTGAGTCTAATAAAAATTAAT----TCACCTTATAGCAGAC-TTT >Bos_taurus TTACTATATAAATGCCAGCTTGATCTGTGATTCTTAGGTTCTGATAAAAATT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------A ATAATATTTACTTCTGGTGTT-----------AAATCTA-AA-------------CTATATATA-GTAATGGATGT---- --------TGACTAGACTTAGCTTGATGATCATTTCACA--ATGCATACAAAT-ATCAATCAAATCATCATTATAATATA TACTTTAAA----------------------------------------------------------------------C TAAACTAAACTAAACTAAAACA---------------------TGTCAATTATACCTCAATTAA---------------A AATAAAATAAAT-TAGC---AGTAGTTTTACTGAGTCTAATAAAAATTAAT----TCCCCTTATCTCAGAC-TTT >Equus_caballus TTAGGATATAAATGGCATCCTGATCTGTGATTCTTAGCTTCTGGCACTAATT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------A ATAATATTTACTTCTGATATT------AAAATAACTCTA-AA-------------CTATGTATG-GTGACGGATGT---- --------TAAGTAGACTTATTGTGGTGATCATTTCATA--TTGTATACAAAT-ATCGA----------ATTATGTTGTA CACCTGAAA----------------------------------------------------------------------C TAATATAA----------TCTA---------------------TGTCAATTATACCTCAATTAAGAAAAT---------A AAGTAAATAAATCTAAC---AATAAATTCATTGAGCCTAATAAAAATTAAT----TCCCTCTGTCTCAGAC-TTT >Ceratotherium_simum TTAGGATATAAATGGCATCTTGATGTGTAATTCTTGGCTTCTGACACT-------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------A ATAATATTTACTTCTGATATT------AAAATAAATCTA-AA-------------CTATGTATG-ATGATAGATGT---- --------TAACTAGACTTATTGTGGTGATCATTTCACG--ATATATACAAATAATCAA-------ATCATTATGTTGTG CACCTGAAA----------------------------------------------------------------------C TAATATAA----------TGTA---------------------TGTCAATTACACTTAAAAAT----------------A AACAAAATAAATCTAGC---AATAATTTCATTGAGTCTAATAAAAATTAAT----TCCCTCTATCTCAGAC-TTT >Myotis_myotis TTAGA----------------------------------------ACTAATT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------A ATAATAT----TTCTGATATT-------AAAGGTATCTA-AA-------------CTATATATG-GTGAC---------- -------------AGACTTACTGTGGTGTTCATTTTGCA--ATAAATACAAAT-ATCAA-------------ATTTTGTA CAGATATGA----------------------------------------------------------------------C TAATA-------------TGTA---------------------TGCCAATTATACTTCAATTAAAAT------------A GATAAAATAAATCTAGG---AATAATTTCATTAAGTCTAACAAAAATGAAT----TCCCCTTACTTCACAC-TTT >Rousettus_aegyptiacus TTAGAGTATAAATTGTTTCTTAATCTGTGGTTATTAGCTTCTGGCACTAATT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------A ATAATATTTATTTCAGATATT------AAAATAGCTCTA-TA-------------CTATGTATGCCTGAC---------- --------TAAATAGACTT---GTGGTAATCATTTTGCAGTATATATGCAAAT-GTTGA-------ATCACTGTTTTGTA TACGTGAAA----------------------------------------------------------------------C TAATATAA-------TGTTGTA---------------------TGTCAATTATACCTCAATTAAA--------------A AATAAAATAAATCTAGC---AATAATTTCATTGAATCTAATAAAATTTAAT----ACCCTTCACTTCATAC-TTT >Condylura_cristata AGAATATATAAGTGACATCTTGAT-TGTGATTCCTACTTTCTAGCATTA------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------A ATAATATTTACTTCTGATGGT---AGTAAAATAAATATA-GT-------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------GATAATTATATTGA--CTAAT-ACGATTAAT----TCTTCTTTTCTCAGAC-TTT >Sorex_araneus TTAGGATATAAATTTCATCTTTATTTGTGATTCTTAGCTACTGGCATTA------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------A ATGATATTTACTTTGG---GT------AAAATACAAGCATGA-------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------AATAATTTTGCTAAATCTAAT-AAAGTGAAT----TTCATAAGCCTCAGCTATTT >Homo_sapiens TTAGGATATTAGTGGCATCTTTCTCTGTGATTCTTAGCTTCCGGTATTAATT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------A ATACTATTTATTTCTAATATT------CAAATAAATCTA-GC-------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------AATCATTTCATTAAGTCTAATAAAAATTAATGACCCTCCTTGCTTGCAGAC-TTT Dog448_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------AACTCAT-------------AGAAGCAGAGAGTAGAATGGTGGTTGCCAGGGGCTG GGGGGTGGGGGAAATGGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGATCTA ATGTACAGCATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCT CACCACACACAAAAAAATG-GTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATT-GTGGTAATCATTTCACAAT GTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTG GAAAAA-------------------------------------------------------------------------- --- >Canis_familiaris CAACTTGCATGTTCT---CTAGAGTTCAA-TA--CTTTTTTACAGA-TTTTAAATGT---AAAATTTATACATGATGA-- -GTTGAACTCTCTTAGATTCCACGTATAAGTGGTATCATACTGTATTTGTCTTTCTCTGTCTGGCTTATCTCCCTTAGCA TAATGCCCTCAAGATCCATCCAAGAACTCAT-------------AAAAACAGAGAACAGAATGGCGCTAACCAGGGCCTG AGAGGCCAGAGAATAGGAGAAATGTT---T-AAGGGTATAAACTTGCAACTAG--TAGATAAGTAAGTTCTGAAGATCTA ATGTGCAGTATAGTCATTATAGACAACGGTATTGTATTATAATCTTCAAGCTTGCTAATAG---AGATCT----TATTCC CACCAC-AAAAAAGAAATG-ATAATTATGTGACATCGTAAAGGTGTTAACTAATGCTACA-ATGGCAATCATATTGTCAT ATATAAATGTATCAAATCAACA--TTGTACACCTTAAATTTATGCAA-TGTTATATGTAAG-TATATTTCAATA------ ---------AAAAATTATACATGATGA---AATGCACAAATTTGAA-TATACATTTACTG-AGATTTGAC-AAATGCAAT CAT >Felis_catus CAACTTGCATATTAT---CTGGAGTTCAA-TA---TTTTTTACAGATTTTTAAATAT---AACATTTATACATGATGA-- -GTTGGACTCTTTTAGATTCCACATATAAGTGGTATCATACCATATTTGTCTTTCTCTGTCTGACATATCTCACTTAGCA TAATGCCCTCGAGGTCCATCCACGAACTCAT-------------AAAAACAGAGAACAGAATGGTGGTCACCAGGGCCTG AGAGGTCAGAGAACAGCAGGGATGTT---T-AAGGGCATAAACTTGCAACTAG--TAGATAAATAATTCCTGAAGATATA ATGTACAGTAGAGTCATTACAGACAACAATATTGTATTAGAATCATCAACCTTGCTAATAG---AGATCTTAATTATCTC CACCAC-AAAAAAGAAATG-ATAATGATGTGACGTCATAAAGGTGTTAACTAATGCGACA-ATGGCAATCATACTGTAAT --ATAAATGGATCAAATCAACAGGCTGTACACCTTAAACTTACACAA-TGTTGTATGTAAA-TAGATTTCAATA------ ---------AAAAATGATGCATGATGA---AATGCACAAATTTTAAGTGTACATTTGCTG-AGATTTGCC-AAATGTAAT CTC >Manis_pentadactyla CAACTTGCATATTATTATCTAGAGTTCAA-TC---GTTTTTACAGA-TTTTCAATGT---AAAATGTATGAATAATGA-- -GTTAGACATTTTAAAATTCCACATACAAGTGATATCATACAGTATTTGTCTACC----TTTGACTTAGATCACTTAGCA TAATGTCCTCAAGGTCTATGCATGAACTCCT-------------AAAAACAGAGAGTAGAATAG--GTTACCAGGGGCTG AAGGGATGGGACATAG-ATAGGTGTTGCTT-AAGGGTGCAGACTTACAACTAG--TAGATAAGTAAGTCCTGGAGATCTA ATG------------ACTATAGACAATAACAGTGTATTACAAACCTCAAACTTGCTTAGAGAGTAGATCTTGATTATTCC CACCACAAAAAAAGAAATGTATAGTTATGTGATCTGACAGAGGTGTGAGCTAATGCTACA-ATGGTAACCATTTCACAAT ATACAAATTTTTCAGATCATCATGTTATACACCTTAAAC------AA-TGTTATATGTAAA-TATATTTCAATAA----- ---------AAAAATTATACATGATGC---AATGCACCAATTTTAAGTGTATATTTGCTG-AGCTTTGAC-AAATGCAAT CAC >Sus_scrofa NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNATACTGA-- -GTTTAACTTTTTTAGATTCCACATATGAATAAGATCATATAGTATTTGTCTTTCTCTGTTTGACTTA---------GCA TAATATCCTTAAGGTCCATCCAGGAACTCAT-------------AAAAACAAAGAGTAGAGTGGTGGTTATCAGAGGGTG AGAGG-AGGAGGATAGGGGAGATATT---T-AAGGTTACAAACTTGCAACTAA--CAGAT----AAGTCTTGGAAATCTA ATGCATGATA---TTATTATAAATAATA--AATATA-AATAAATATCAAACTTGCTAAGGCAGTAAGTCTTAGTTACTTC CATCAC-AAAAAAGAA----ATAATTATGTGT-----TAGAGGTATTAGCTAACACTACAAATGGCAATTGTATTGC-AT ATATAAATGTATCAAATCAACATGTTGTACACCTT-AACTTATACAC-TGTTATATGTAAA-TATATTTTAATT------ ---------AAAAATTATACACAATGA---AATGGACAAATTTTAAGTGTACATTTGCTG-AAATTTGAC-AAATGCAAT AAT >Bos_taurus TAAATTTTATATTATTATCTAGAGTTCAA-TA--AGTTCTTATAGA-TTTTTAATGT---AAAATTTATACACAATGA-- -GTTTGAGTTTTTTAGATTCCACATATGAGTGATATCCTACAGTATTT------CTTTCTCTGATTTATCTCACA--GCA TAAGATCCTTGAGGTCCGTACATGAACTGGT-------------AAAAACAAAGAGCAGAGTATTGGTTACCAAGGGCTG ATAAGTGGGGA---TGGGGGGATGTT---T-AAGGCTACAAACTTGCAACTAG--CAGAGAAACAAGTCTTGGAGATCTA GTGCACAGTATTGT---TATAGACAATAATAATGTA-AAAAAAAATAAAAGATGCTAAGGTGGTAGATCTTAATTATTCC CAATAC--AAAAAGTAAGA-ATAATTATGTGA-----TAGAGATGTTAGCTAATACTACAGATGACAATGGTATTGCAAT ATAAAAAT--ATCAATTCAATATGGTGTACAC---AAACTTATACAC-TGTTATAAGTAAA-TATATTTCAATTT----- ---------AAAAACTATACACAATTA---AATGCACAAATTTGCAGTGTAACTTTTCTG-TGACCTAAC-AAATGCAAT CAC >Equus_caballus CAACTTGCATATTATTATCTAGAGTTCAA-CGTTTTTTTTTACAGA-TTATTAATGT---CAAATTTATACACGAAGA-- -GTTCGTGTTTTTTAGATTCTACATATAAGCGAGATCCTACAGTATTTGTCTTTCCCTGTCTGACTTATCTCGCTTAGCA TAATGTCCTCAAGGTCCATCCATAAACTTGTAGAAACACAGTGAAAACACAGAGGGTAGAGTGGTGGTTGCCACGGGCTG GAGGATGTGGAAATAAGGTCGATGTTGTCT-AAGGGCACAAACTTGCAACCAG--AAGCT-AATAAGTCCTGGAGATTTA CTGAACAGCATAGTGATTATGGACAACAATGCTGCATCATAAACTTCAAACTTGCTAAGAGACTAGATCTTAATTATTCC CACCAC-AGAAAAGAAATA-ATAATTATGTGACTTGATAAAGGTGTTAGCTAGCACTACA-ATGGCAATCATATTGCCAT GGATAAATGTATCAAATCAACATGTTGTACACCTTAAACTTACATAA-TGTTATATGTAAA-TATATTTCAAT------- ---------AAAAATTATACATGATGG---AATGCACACATTTTAAGTGTACATTTGCTG-AGATTTGTC-AAATACAAT CAC >Ceratotherium_simum CAACTTGTGTATTATTATCTAGAGTTCAA-TATTTTTTTTTACAGA-TTATTAATGT---AAAATTGATACATGATGA-- -GTCCGGCTTTTTTAGCTTCCACATATAAGTGATATCATACAATATTTGTCTTTCTCTGTCTGACTCATCTCACTTAGCA TAATGTCCTCAAGGTCCATCCATGAACTTGT-------------AAAAACAGAGAGTAGAATGGTGGTTGCCATGGGCTG GCAGGTTGGGGAATAGGAGAGATGTTGTTT-AAGGGCACAAACTTGCAACAAG--AAGATAAATAAGTTGTGGAGATTTA ATGCACAGCATAGTGATTATGGACAACAATACTGCATTATAAACTCCAAACTTGCTAAGAGGCTACATCTTAATTATTCC CACCAT-AGAAAAGAAATG-ATAATT---TG---------------TAGCTAACACTACA-GTTGCAATCATATTGCCAT ATATAAATGTATCATATCAACA---TGTACACCTCAAACTTACAAAA-TGTTACATGTACA-TATATTTCAAT------- ---------AAAAATTATACATGAGGA---AATGCACAAATTTTAAGTGTACATTTGCTG-AGATTTGAC-AAATACAAT CAC >Myotis_myotis CAACTTGCATATTATTATCTAGAGTTTAA-TA----TTTTTATAGA-TTTTTAATAT---AGAATTTATACATGAAAA-- -GTGTAGCTTTTTTAGATTTCACATATAAGTGATATCATATAGTATTTGTCTTTCTCTTTCTAATTTATCTCACTTAGCA TAATGTCCTCAAGGTCCATTCATGAATTTGT-------------AAAAACAGACAGTAGAATGG---TTACTGGGGCTCA G--GGTCAGGGAATAAGAGAGACGTT---T-AAGGGTACAAACTTGCAACTAG--TAGATAATTAAGTCCTGGAGATCTG ATGTACAGAACAGTGAATACAGACAACAATATTGTATTATAGACATCAAACTTATTAAGAGACTACATCTTAATTATTCT CATCAC-AAAAAAAGAA---ATAATTCTGTGAAATAACTGAGGTGTTAGCTAACAATACA-ATGGCAATCACATTGGAAT ATGTAAATGTGTCAAATCAGTGTGTTGTACACCTTAAACTTAGACAA-CATTATATGTAAA-TATATTTCAAT------- ---------CAAAATTATTCAGGATGA---AATGCACAAATGTTAAATGTACATTTACTG-ATATTTGACAAAAAACAAT AAT >Rousettus_aegyptiacus AAACTTGCATATTATTATCTAGAGTTTAA-TA----TTTTAATAGA--TTTTAAAGT---AGAATTTATACATGATAA-- -GTTTGGCTTTTTTAGATTCCATATATAAGTGATATCATAT-ATATTTGTCTTTCTCTTTCTAACTTATCTCACTTGGCA TAATGCCCCTAAGGTCCATACATGAACTTGT-------------AAAAACAGAG--TAGAATGGTGGCTACCAAGG-CTG GTGGGTAGCGGAATAGGAGAGATGTT---T-AACGGTACA-ACTCGCAATTAG--TAGAT----ATGTCCTGTGGATCTA ATGCACAGTATAGCGATTATAGACAAAGACACAGTATAATAAATATTAAATTTGCTAAGTGGCTACAT----ATTGTTTT CGCCAC-AAAAAAGAAATG-ATAATTAT-TGACATGACAGAGGTGTTAACTAATGCTACA-ATGGCGATCACATTGCAAT ATATAAATGTACCAAAG-AATGTGTTAAACACCTTAAACTTACGCAA-TGTTATATGTAAA-TATATTTCAATT------ ---------TAAAAGTATACGCGATGA---AATGCACAAATTTTAAGTGTACATTTGCTG-AGATTTGAC-AAATAAAAT CAC >Condylura_cristata TACCTTGCATATTATTACCCAGAGTTCAGTTATTTTTTTTTCTGCACACTTTGGTGT----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------CAAATTTATACACAATGA---AATGCACGATATAGAAACGAACCTTTGCTG-AGATTTGAC-AAATG-AAT CAC >Solenodon_paradoxus CAACTTGTGTATTATTACACAGAGTTCAA------CATTTTAAATGACATTTAATGT----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------AAAATTTATAAACA---A---AGCACACAAATTTGAAAGGCACATTTACTG-AGATGTAAC-AAGTACAGT CAA >Homo_sapiens TAACTCACATATTATTAGCT--AGTTTGA-TA----GTTTTACAAA--TTTTAATGT----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------AAAATTTATGCATAATAA---AATGTGC-AGTTTTATGTGCACATTTGCTGTAGATTTGAC-AAATGCTGT CAC Dog452_LINE >L1_CARN7_3END ---------------------------------------------------------------------------GATGG TAACTAGACTTATTGTGGTGATCACTTCACAATGTATACAAATGTCGAATCACTATGTTGTACACCTGAAACTAATATAA CATTGTATGTCAATTATACTCAAA-TAAAA----------------AAA------------------------------- ---------------------------------------------------------------------------- >Canis_familiaris AGTGTTTGGGATACTATCAAGGGTCAGCAGTT--AGCGACAAGACTAGGACC---AG-AATACAATT---CT-------- -----AGATTTATCATGGTGAAAATTTCACAGTATATGC-AATATTGAATTGTTATGTTGT-CACTTGAAACCAATATGA TGCTATATGTCAATTATACTTCAG-TAAAA----------------AACTTAATTT-AACTTAATTTTTTGAAAA----- AGAATACAATTCTTCT---GATGCCTAG----ATG---TTCTCTGATGAGTGCCTGATGGGTTCAAGGAGTCCTTG >Felis_catus AGTGTCTGTAATATTGTCAA-GGTCAACAGTT--AGTGACAAGACTAGGGCT---AG-AATACAATT---CT-------- -----AGATTTATCATGGTGATTGTTTCACAGTATATAC-ACTACTGGATCATTATGTAGTACACCTGAAAGTAATATGA TGTTATATGTCAATTATACCTTAA-TAAAAACTCGACCTTAATAAAAACTCAAATTTAACTTAATTTTTTGAAAA----- CGAATACAATTTTTCT---GACACCTAG----ATATTTTTTTCTGATGGGTGCCTGATAGGTTCAGGGAGTCTTTG >Manis_javanica AGAGGCTGGGATATTATCAA-GGTCAACAGT------GACAGGACTGGGATT---AG-AATACAATT---CT-------- --CCCATATTTACCATGGTGATCATTTCACAGGGTAAACAAATATCAAATCACTATGCTGTGCACCTGAAATTAATATAA TGCTATGTATCAATTATACCTCAATTGAAA----------------AAGTCAATTT-AATTTGATTTTTTT--AA----- AGACCACAATTCTCCT---GATGCTGAG----ATG-CTCTTTCTGAAGGGAGCCTGGTGGATTCAGGGAGTCCTTG >Sus_scrofa AGAGGCTGTGATATTATCAA-GGTCAGCAGTT---GTGGCACGACTGAGATT---AG-AATGCAATTCTCCT-------- -----AGACTTAACGTGGTGGTAATTTCTCAGTGTATGCAAATACCAAATCATTATGGTGTACACCTTAAGCTAATATAA TGTTATGTATCAATTATACCTCAA-TAAAA-ATT------------AATTTAA-------------TGTAATTAA----- AAAATACAGTTCTCCT---AATGCCTAG----ATG-CTCTTTCTGATGGGAGCCTGGGGGGTTCAGGGAGTCCTCA >Bos_taurus AAAGGCTGTGATATTATCAA-GGTTAGCAGTT--ACTGATATAACTGGGATT---AG-AATACAATTCTCCT-------- -----AGAATTATTGTGGTGGTAATTACTGATTGTATACAAATATCAAATCATTATGGTGTACACCTAAAACTAATATAA TGTTATGTGTCCATTATACCTGAA-TAAA-----------------AAATTAA-------------TTTAATTAA----- AAAATACAATTCTCCT---GATGCC-GG----ATG-CTCTTTTTGAGGGGAGACTGATGGGTTCA-GGAGTCTTTG >Equus_caballus GGAGGCTATGATATTATCAA-GCTCAACAGTT--AGTGATGGGACTTGGATT---AG-AGTACAATT---CT-------- --------CCTATTGTACTGATCATTTCACAGTCTA--CAAATATTGAATCATTATGTTGTACACCTGAAACTAATATAA TGTTATATGTCAATTATACACAAT-TAAAA-GTT------------AAATTAAACT----------TAAACAAAA----- AGAATACAATTCTCCT---GATGCCTAG----ATT-CTCTTTCTGATGGGAGCCTGATGGGTTCAGGGAGTCTTTG >Ceratotherium_simum AGAGGCTGTGATATTATCAA-GGTCAACAGTT--AGTGATGGGACTGGGATT---AG-AATACAATTCTCCT-------- -----AGACTTATTGTGGTGATCATTTCACTGTATATACAAATATTGAATCATTATGTTGTACACCTGAAACTAATATAG CGTTATATGTAAATTATACCTCAA-TAAAA----------------AAATTAAATTATATTAAACTTTTAAAAAG----- AGAATACAATTGTCCT---GACGCCTAG----ATG-CTCTTTCTGATAGGAGCCTGATAGGTTCAGGGAGTCTTCA >Myotis_myotis GGAGGCTGTAATATTATTAA-AATCAACAGTT--ATTGACAGGACTGGGATT---AGAAATATAATTCTCCT-------- -----AGAGTTATT---GTGATCATTTTGAAGTGTATGTAAATATTGAATCATAATGTTGTAAACCTGAAACCAATACAA TGTTATATGTCAACTATACTTCAA-TTTAATTTT------------AAATTAAACT----------TTTAAAATATT--- AAAATATTACAATTCT---GATGCCTAC----ATG-CTCTTTCTGATGGGTGCCTGATGGGTTCAGGAAATCCTTA >Rousettus_aegyptiacus AGAGGCTGTGATATTATCAA-GGTCAACAGTT--AGTGACATGACTGGGATA---AA-AATACAATTTTTCT-------- -----AGAC--ATT---GTGATCATTTCACAGTGTATATAAATAACAAATTATTATGTTGTACACCTGAAACTAAT---- -GTTATATGCCAATTATACCTCAA-TTTAA----------------AAATTAAGTT------AATTTTTAAAAAA----- AGAATACAATTCTGTC---CANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Condylura_cristata AAAGGCTGTGATATTATCAA-GACCAAGAGAT--GGTGACAGGATTTGGATT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- AAA--ACAATTCTCTT---GATGTCTTG----ATG-TGCTTTCTGTTGGGAGACAGATGGGTTCAGGGAGTCCTTG >Sorex_araneus TGAGGTTGGAATAGTATCAA-GATCAACTGTTGAAATAACAGAACATTAAAT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- AAAATAT-TTTGTCCT---AATGATTT----------------TTATTGGAGTCTGATGGATTGAGGACGTCATTG >Homo_sapiens AGAGGCAATAATATTATCAA-GGTCAACAGTT--AGTAACAGGATTGGGGTT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- GGAATACAATTCTCCT---AATACCTAGATTAATG-ATCTTTCTGATGAGAGCCTGATGCGTTCATGGAGTCCTTG Dog453_LINE >L1MA9_3END -------------------------------------------------------------------------------- ------TTTTTCCAGCTTTATTGAGGTATA-------ATTGACAAATAAAAATTGTATATATTTAA--GGTGTACAACGT G--------------ATGTTTTGATATA--------------CGTATACATTGTGAAATGATTACCACAAT--CAAGCTA ATTAACATATCCATCACCTCACATAGTTAC--CATTTTTTTGTGTGTGGTGAGAA-CACTTAAGATCTACTCTCTTAGCA AATTTCAAGTATACAATACAGTATTA-----TTAACTATAGTCACCATGCTGTACATTAGATCTCCAGAACTTATTCA-- -------------------------------------------------------------------------------- >Canis_familiaris GATGTGTCAAGACC----TAAAAACCAC-ACAAAATCTGGCCTTAACACAACTTC---TCACTATCTCC---TTTCTGTT T--TCATTTTTCCAGTTTTATTGAGACATA-------ATTGGCATGT-AGCGCTGTATAAGTTTAA--GGTATACAAC-- ---------------ATGATTTCATA----------------TGTCTATCTTGCAGAATGATCATCACAAT--AAGCTCA GTTAAC--ATCCATCACCTCACAAAGCTAC--ATTT--TTTTC---TGATGAGAATTTTTTAAGATCTACTCTCTAAGCA ACTTCCAAGTATACAATGCAGCATTG-----TTAACTATCGTCCTCACGTTGCACATGACAGCCCCG------------- -TCTCTGTTTTC---AG-TTCCATCTAGTAC----AAGATAAGCAGTTGTTCCCCCCGCCCCCGTTTTCTTTGTTAAGAA >Felis_catus GATTTGTTAAGACC----TAAAAACCAC-ACAAAATCTGCCCTTAACATTACTAC---TCACTATTTCA---TTTCTGTT T--TCATTTCTCCAGTTTTATTGGGACATA-------ATTGGCATAT-AGCACTGTATAAGTTTAA--GGTGTACAACAC G--------------ATGATTCGATATACGCGTGTGTGTGCGTGTACATATTGCAATGTGATCACCGCAAT--AAGCTTA GTTCAC--ATCCATCCCCTCACATAGTTAC--ATTT--TGTTCTTGTGATGAGAG-TTTTTAAGATCGACTCCGTAAGCA ACTTTCAAGTATAGAATG------------------TACAGTCATCATGTTGCACATTACAGCCCCA------------- -TCCCTGTTTTC---GG-TTCTATATAGCAC----AAGATGAACAGTGGTTTCCCC----------TTTTTTCTTAGAAA >Manis_pentadactyla AATAGGTTAAAA------CAGAAACCAC-ACAAAATCTGGCCTTAAGATTACTTC---TTGCTATTTTC---TTTTT--- ---CTTTTTTCCAAGTTTTACTGAGATATA-------ATTCACATAT-AACATTCTCTAAGTATAG--GGTATACAGCAT A--------------GTGATTTGAGAT---------------TTTATGTGTCATAAAGTGATAACCACAAT--AAGTTTA GCTGAC--ATCC-TCACCTCACATAGTTACAGAACTTTTTTTCTTGTGATGAGAA-CTTCTAACATCTACTTTCTAAGCC ACATTCAAATATACAACACAGTACTG-----TTAACTACAATCACCACGTTGTACATTATATCCCCA------------- -TCACTATTTTC---AG-TTCTATATAGTAC----AAGGTAAACAGTGTTTTCCCC---------TTCTTTTGTTAAAAA >Sus_scrofa GATTTGTCAGGGCC----TAGAAACCGC-ACCAAACCTGGCCTTAACAAAACGCC---TCGCTATTGTC---TTTCTGTT TTCTTGTTTC-CCAGTCTTACTGAGATAAA-------ACTGACATGT-GCCACTGTGCAAGTGTGA--GGTGTGCCACCC A--------------GTGATTTGATACC--------------TGCATCGATTGTGACATGATGGCCACAAT--AAGTTTC GTGACC--CTCCCTCACCCGAAGTGGTTACA-AGCCTTTGTTCTTGTGGCGGGAA-CTCTTAGGGTCTAGCCTCTGGGCA ACTTTCAAATGCCCACAGCAGTGTCGCATCCTTAGCTCTCGTCATCGCGCTGTATGACACGGCCCCG------------- -GCACTATCTTG---AG-TTCTATACACTGC----AAGGAAAACAGCCGTTTCCCC---------CTTTTTTGTTAAGAA >Bos_taurus GATCTGTCAAGGCC----TAGAAACCAC-AGAAGATCTGGATTTAGTATAATTTC---TCATTATTTTC---TTTCTTCT TCCTTTTTCCTCCAGTTTTATTGAAATAGA-------ATTGATATAT-AACACTGTCTAAGTTGAA--GGTATACAACAT A--------------ATAATATGATACA--------------GGTGGTTATTGGGACATGGTCACCATGGTAAAAAAAAA ATTAAC--ATCCATCAACTCACGTAGTTACA-ATTCTTTTTTCTCATGGTGAGAA-CTTTTCAGGTCTACCCTCTTAGCA ATGTTCAAATATGCAAAACAGCATTG-----TTGGCTATAGTCATCACGTTGTACGATACATCCCCA------------- -GCACTGT-TTC---AG-TTCTATATAGTAT----AAGGTAAACAGTTGTTTCCTC------TTTTTTTTTTGTTAAAAA >Equus_caballus AATCTGTCGAGACC----TAGAAACCAC-ATCAAATCTCGCCTTAACAGAACTTC---TCAGTATTTTC---TTTCTTTT TTCTTTTTTTTCCAGTTTTATTGAGATA---------ATTGACATAT-AACACTGCATAAGTGTAA--GGCGTACAACAT A--------------ATGATTTGATATT--------------TGTATGTATTGTGAAATGATTACCACAAT--AGCTTTA GTTAAC--AACTATCACCTCACATGGTTAC--AATTTATTTTCTTGTGGGGAGAC-TTTTTAAGATCTACTCTCTTAGCA ACTTTCAAATATACAAAAGAGTATTG-----TTAGCTACAGTCATCCTGTTGTACTTTACACCCTCA------------- -TGTCTATTTTC---AG-TTCTGTAC---------ACGGTAAACAGTTGTTTCCCC---------CTTTTTTGTTAAAAA >Ceratotherium_simum GATTTGTCAAGACC----TAAAAACCAC-ACAAAATCTGGCCTTAACATAACTTC---TCACTATTTTC---TTTGTTT- ---TTTTTTTTCCAGTTTTATTGAGATAAA-------ATTGACATAC-AACATTGTGTAAGTTTAA--GGTGCTCAACAT G--------------ATTATTTGATAGT--------------TGTATATATTGTGAAATGATTACCAAAAT--AAGTTTA GTTAAG--AGCCATCACCTCACATGGTTAC--AATTTATTTTCTTGTGATGAGAA-CTTTTAAGGTCTACTCTCTTAGCA ACTTTCAAATATACAAAACAGTGTTG-----TTAACTATAGTCACCATGCTGTACATTACATCCCCG------------- -TCTCTATTTTC---AG-TTCTATATAGTAC----AAGGTAAACAGTTGTTTCCCC---------CTTTTTTGTTAAAAA >Myotis_myotis GATTTGTTAAGACC----TAGAAATCACAAAAAAATCTGGCCTTAACATTACTTC---TCACTATTTTC---TTTCT--- ---TTTTTTCCTCGGTTTTATTGAGGTATA-------ATTTACTTTATCACATTGTATAAGTTTAAATGTGGGAGAACAT ATTTGGCAATGAGACATAATTTGATATT--------------TGTATATATTGTGAAATAATAACCACAAT---AAATTA GCTAAT--ATCCATCACCTCACATAGTTAT--AATT--TTTCCTTGTAGTGAGAA-CTTTAAAGATCTACTCTCTTAGCA ACTTTCAAATATGCAATACATTATTG-----TTAACTATAGTCACCATATAGTACATTAA----TCA------------- -TCACAATTTTC---AG-TTCTATACAGTAC----AAGATAAATAGTTGCTTCCCC---------CTTTTTTGTTAAAAT >Rousettus_aegyptiacus GATTTGTGAAAACC----TAGAAACCAT-ACAAAATCTAACCTTAATATAACTTC---TCACTACTTTC---TTTCT--- -----TTTCCCCCAATTTTATTGAAATACAAAGTTTTACTGACATAT-AACACTCTATAAATTTCA--GGTGTATGACAT A--------------ATAATTTGATATA--------------TGTATATATTGTGAAATGATCACTACAAT--AAGGTTA GCTAAT--ATCCATCACCTCACATAGTCAT--AATTTTTTTCTT----GTGAGAA-TTTTTAAGATCT---TTCTTAGCT ATTTTCAAGTATGCAATACAGTATTA-----TTAGCTATAGTGATCACATTGTACAT-----CCCCA------------- -TTACTATTTTC---AGTTTTTATATAGTACTAGGTAGGTAAACAGTTGTTTCCCC--------CTTTTTTTGTTAAAAA >Condylura_cristata GACTTGCCAAGACCTAGGTAGAAACCAC-ACAAAATCTGGTCTTCACATAACTTT---TCATTATTTTC----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------AG-TTTGATATAGTAC----AAGGTAACCCGTTGTTCCCCT-----------TTTTTCTTAAAAA >Erinaceus_europaeus GATTTCCTGAGACC----CAGAAACCAC-ACAAAATCTGGCCTT-ATATACCTTC---TCACTATCTTC----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------AG-TTCTATCTAGCAT----AAAATAAATTATTGTTTCTCC----------CTTTTTGTTAAAAA >Homo_sapiens GATTTGTCAAGACC----TTGAAACCGT-ACAAAATCTGGCCTTAACATTACTTC---TCACTATTTTC----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------AG-TTCTATACAGTAC----AATGTAAACAGTTGTTTCCCC---------TTTTTTTGTTAAGAA Dog455_LINE >L1MA9_3END ------------------------------------------------------------------------------TT TTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACG-TGATGTTTTGA------ ----TATACGTATACATTGTGAAATGATTACCACAATCAAGCTAAT---------------------------------- -------------------------------------------------------------------------------- >Canis_familiaris AGGTCAGAATTTGCATCAAC-CCTTCTTACACAGTATTTAGCAAATTGAAT---GAAGAAGACATTTTCTT----TTCCT TTTCCAGCTTTATTGAAATCTAATTGACACAG-GATCTTGTGTAACTTTATGGTGTACAACA-GAATGATTCAA------ ----TATATGTATATATTGCAAAATTGTT--------------------CAGAAGGGTGTTTTTACTT---CATCTATTT TTT-----TCCCTCAGGGGGAA-AAT------------------------GAATATAA-AATT--------TTAAAGGTA >Felis_catus AGGTTGGGGCTTGTGGAAAC----TATTACACAGTATTTAGCAAGTTGAAC---AAGGAGGAAATTTTCTT----TTTCT TTTCCAGCTTTATTGGAACATAATTGATATAG-AATACTGTGTAAGTTTATGGTATACAAAAGTAATGATTTGA------ ----GATATGTATATATTATGAAATTATT--------------------GAGG-GTGTT--TTTTCTT---CATCAATTT TTCTT---TTCCTCAGTGGGCACAAT------------------------GAATACAA-AATT--------TTAAAGGTA >Manis_pentadactyla AGGTCAGGACTTTCACTAAC-AATTACTACAGAAAATTCATCCAGTT---C---GTTGACAGTATTTTCTT---TTTTCT ACTCCAGCTTTATTGAAACATAGTTGACATAG-AACATTATATAATTTTAAGGTATTCAATG-TAATGGTTTGATGTATA TATATATACATATATATTGC-AAATGATT--------------------GAAACAGGTC--TTTTCTT---AATTTTT-- --------TTCCTCAGCAGGCACAATAATTACAAGATTTTTAAAGGTAGAAAATAAAAGAATT--------TTAAAGGTA >Equus_caballus AGGTCAGGAGTTGCACC----AATTGTTACACAATATGTAACAAGTTGAAG---GAGGAGGGCATTTTCTT----TTTCT CTTCCAAC--TATTGAAATGTAACTGACATAT-AACATTGTGTAAGTTTAAGGAGTACTACA-CGATGATTTGA------ ----TATATGTATATATTGCAAAATGATT--------------------GAGGAGGGTA--TTTTCTT---AATCTGTTT ---TC---TTCCTCAGTGGGCACAAT------------------------GAATACAAGAATT--------TTAAAGCTG >Ceratotherium_simum AAGTCAGGACTTGCAC---C-AATTGTTACACAATATTTAGCAAGTTGAAG---AAGGAGGTTATTTTCTT----TTTCT TTTCCAGCTGTATTGAAATGTAATTGACATAC-AACATTGTGTAAGTTTAAGGTGTAAAACA-TAATTATTTAG------ ----TATATGTGTATATTGCAAAATGATT--------------------GAAGAGGGTA--TTTTCTT---AATCTATTT ---TC---TTCCTCAGTGGGCATAAT------------------------GAATACAAGAATT--------TTAAGGGTA >Myotis_myotis AGGTCAAGACTTGCATCAAT-AATTGTTACCCAATATTTAGCAATTTGAAG---GAGAAGGGTATTTTCTC----CTCCT AACTCAGCTTTATTGATATATAATTGGCATAT-AATATTGTATAAGTTTCAGTTCTACAATA----TGTTTTGA------ ----TATATGTATATATTGCAAGATGATT--------------------GATGATAGTA--TTTTCTT---AATCTATTT --------TTTCTTAGTGGACACATG------------------------GAATACAAGAATT--------TTAAAATCA >Rousettus_aegyptiacus AGGTTAGGATTTGCATGAAC-ACTTGTTACCCATTAATTAACAACTTGAAG---GAAGAGGGCATTTTTTG----TTTTG CCCCTAGTTTTATTGAAATATCATTGGCATAG-AACATTGTATAAGTTTAAGTTGTACATTA-TGATGATTTAC------ ----TGTACATACATGCTGCAAAATGATT--------------------AAAGGCTATA--TTTTCTT---AATCTATTT TTCTT---TT-------GGGCACAAT------------------------GAATACAAGAATT--------TTAAAGGTA >Condylura_cristata AAGTCTGGACTTCCACTAACAAACTGTTGTGCTATTTTTAGTGAGTTGGAA---GATGAAAGTATTTGTCT--------- CACCCAGATTTATT-ATATGTAATTGATAGAT-AATTTTATGTAACTTTAAGGTATACAATA------TATTGA------ ----TACATGTATACATTGCAAAATAAC---------------------AGG----GTT--TTTTCTT---TATTTTTTT TTTTC---TAAATTAATGAGCA-AAT------------------------AAATTCAGGAATTT-------TTAAAGCTA >Uropsilus_gracilis AGGTCTGGTCTCATACTAAC-AACCGCTAGATGGAATTTAGCAAATTAAAA---GAGGACAATATCT-CCC--------- CACCCAAATTTATT-ATGTGTAATTGAT--AT-TATTGCATG----TTTAATGTACACAATG-TAGTGATAAAG------ ----CATAAGTGTGCATTACAAAATTAG---------------------GGG----GAT--AGTAATT---TATTTTATT T----------ATCAATGAGCAAAAT------------------------GAATACTGAGATGT-------TTAAAGCTA >Sus_scrofa ATGTTAGCATTTGCCTGAAC-AATTGTCACAAAATAGTTAGCAAATTAAAG---GAGGGGGGTATTTTCTC--------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------AATCTATTT TTTTTTAATTCCTAAGTGGACACAAT------------------------GAATATAAGAATT--------TTAAAAGCA >Tursiops_truncatus AGGTCAGGATTTGCATGAAC-AATTGCTTCACAATCGTTAGCAAGTTGAAG---GAGGAGGGTATTTTCTC--------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------AATCTCTTT TTTTA---TTCCTCAGTGGTCACAAT------------------------GAATACAAGAATT--------TTAGAGATA >Homo_sapiens TGGTCAGGATTTGCACCCAC-AATT--------------AACAAATT---G---GAGGAGGGTGTTTTCTT--------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------AATCTGTTT ----T---TTCCTCAGCAGGTACAAT------------------------GACTATGAGAATTTCTCCCTCTTAAGAGTA Dog462_LINE >L1_CARN7_3END ------------------------------------------------------------------------------AA CNTTGTATGGTGACAGATGGTAACTAGACTTATTGTGGTGATCA-CTTCACA---------------------------- -------------------------------------------------------------------------------- -----------ATGTATACAAATGTCGAATC-----------ACTATG---TTGTACACCTGAAACTAATATAACATTGT A--TGTCAATTATACTCAAATA------------AAAAAA---------------------------------------- ----------------------------------------------- >Canis_familiaris TCTGACTTGCTTTGATCT-ACCCTTACT---ACTCTTAAAGTGTCCCACTCCATAT---AAGAATGCCCTTCCAT----- --------GATG---GATGTTAAATCAACTTATTGTGGTTATCA-TTTCACATA---GTATATATATATATATATATATA TATATATAT--------------ATATATATATATATGTAT----------------ATATATACATATATATGTATATA TACACACACACACATATATTTATGTCAAGTCATTCATTATTCATTATG---CTGTCCACCTCAAACTTAGAGAATGTTTT A--TGTCAATTATATTTCAATAGACCTAGGG---GAAAAAA---ATGAGTGTCCTTCCTC---TCTCCTACAAA------ -----TAGATTTTGTCATTCATTA-------AATGATTTA-TCTAAA >Felis_catus TCTGACTTGCTTTGGTTT-GCCCTTACT---ACTCTTAAAGTGTCCCGCTCCGTAT---AAGAATGCCCTTCCAT----- --------GATG---GATATTAACTCAGCTGATTGTGGTAATCC-TTTTATATATATATATATATATATATATATATATA TATATATATACACACACACACACATATACATATATGTGTATATATATAAATAAATAAATATATATATATATAAATATATA TAAATACACACACACACATATATATGAAGTC-------ATTCATTATG---CTGTCTACCTCAAGCTTCTGGAGTGTTGT A--TGTCAATTACATCTCAAGAGAACTAGGG---GAAAA-----AAGAATGTCCTTC-TC---TCTCCTACAAA------ -----TAGACTTGGTGATTCATTT-------CATCATTTA-TTTAAA >Manis_pentadactyla TCAGACTTGCTTTGGTT--GATGGGACT---GCTTTTAAGGAGCTCTGCTCCATAT---AAGAATGACTTTCCCT----- --------GATG---GATGTTAACTAAA------------ATCG-CTTCACA---------------------------- -------------------------------------------------------------------------------- -------------ATAGACGTGTGTCAAATC--------------GTG---CTGTACACCTTANNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-----NNNNNNNNNNNNNNNN---NNNNNNNNNNN------ -----NNNNNNNNNNNNNNNNNNN-------NNNNNNNNN-NNNNNN >Equus_caballus CCTGACTCGCTTTGGTTT-GCCCTTACT---GCTTTTAAAGTTGCCCATGCCGTAT---AAGAATGCCATTCCTT----- --------GATG---GATGTTAACGAAACCTGGTGTGGTGGTCA-TTTCACG---------------------------- -------------------------------------------------------------------------------- -------------ATATAAGTATGTCAAGTC-----------ATTATG---CTGTACACCTTAAACT--CACAGTGTGGG A--GGTCAAGTATATCTCAATAAAACTAGGG---AAA-------AAAAATGCCCTTCTTC---TCTCTTACAAA------ -----TAGAATTGGATATTCATT--------AATCGTTTA-TTTAAA >Tapirus_indicus TTGGACTTGCTTTGGTTT-GCCCTTACT---GTTTTTAAACT-------TCCATAT---AAGAATGCCATTCCCT----- --------GATG---GATGGTAACTAAACCTATTGTGGTAATCA-TTTCATA---------------------------- -------------------------------------------------------------------------------- -------------ATATATGT-----AAGTC-----------ATTATG---CTATACACCTTTAACTTGTACAGTGTCGT A--TGTCAAGTATATCTCAATAAAACT--GG---AAA-------TCAAATGCTTTTCCTC---TCTC--ATGAA------ -----TAGAACTGGATATCCATTT-------AATCATTTA-TTTAAA >Myotis_myotis TC-AACTTGCTTTGGCTT-GCCCTTACT---GCTTTTAAAGTG-TCCAGTCTAAGT---AAGAATG----TCCTA----- --------GGTG---GCTCTTAATTAAACATAGTGTGATAATTA-TTTCACA---------------------------- -------------------------------------------------------------------------------- -------------ATATATGTATATCAACTC-----------ATTATG---CTGTACACATTAAACT--TACAGTATTGT A--TGTCCATTGCATCTCAATAAAACT--GG---TCAAAAA---AAGAATGTCCTT--TC---TCTCTTACAAATTTGGA TATCTTGGATCTGGATACTCGTTT-------AATCATTTA-TTTAAA >Rousettus_aegyptiacus TCCG-CTTGCTTTGGCTT-GCCCTTACT---ACTTTTGAAGTG-CCCACTCCAAAT---AAGAATGTCCTTCCTT----- --------GAGG---GATGCTAACTAAACTGATCGTGGTGATCATTTTTGCA---------------------------- -------------------------------------------------------------------------------- -------------ACGTATGTATGTCAAGTC-----------ATCATG---CCGTATGCCGTAAACTTACACAGCGCTGT A--TGTCAATTATATCTCCATACAACTTGGGGGTGGGAAGC---AAGCATGCTCTTCCTC---TCTGTTACAAA------ -----TAGAATTGGACATTCATTTAAAATAAAATCATTTA-TTTTAA >Condylura_cristata TCACACTTGTTCTAGCAT-GCCCTTACT---AATTTTAAAATGCCCCACTCTGTTT---AACAATGCCAACCCTC----- --------AATG-------TGAACTAAATTCATTCTGGTAATCA-TTCCCTG---------------------------- -------------------------------------------------------------------------------- -------------AGATATGAATGCCAAGTC-----------AGTATGTTATTGTACACCTGGAACTTACACAATGTTGT ATGTGTATATCATATCTCAATTAAACT--------GAAAAA---ATTTATGCTTTTCACC---TC----ATGAA------ -----TAGAATTGAATGCTCATTT-------TATCATTTA-TTGTAA >Uropsilus_gracilis TCACACTTGCTCTGGATT-GCCCTAACT---AATTTTAATGTGCCCCACTCCAACT---AACGTTGCCCGTCCTT----- ----GATGAATG-------TGAACTAAATTCATTCTGGTAATTA-TTCCCTA---------------------------- -------------------------------------------------------------------------------- -------------ATATGTGCATGTCAAGTT-----------GGCATG---TTGTACCCCCGAAATTGATACCATGTTTT A--AGTCAATTATATCTCAATTAAACT--------GAAAGG---A---ATGCTTGAC-TC---TC----ACAAA------ -----TAGACTTGGAAATTCATTT-------GATCATTGA-TTATAA >Sus_scrofa TCCGACTTGCTTTGGCTTGGCCCTTACTATGGCTTTTAAAGTGCCCTAATCTAGAT---AAGAATGCCCTGCTTC----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------TCCCTTACAAA------ -----TAGAATTGAATATTTATTT-------AGTCATTTA-TTTTAA >Vicugna_pacos TGCGACTCGCTTGGGTTT-GCCCTTACT---GCTTTTAAAGTGCCCTCCTCCAGAT---AAGAATGCCCTTCCTC----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------TCCCTTGCAAA------ -----TAGAATTGGGTGTTCACTT-------AGTCATTTA-TTGTAA >Homo_sapiens TCTGACTCACTTTGTTTT-TCCCTTAAT---GCTTTTAAAGTGCCCCACTCCATAT---AAGAATG---TTCTTC----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------TCTCTTAGGAA------ -----TAGAATTAGATATTCATTA-------AATCATTTATTTTTAA Dog463_LINE >L1_CARN7_3END ------------------------------------------------------------------------CTTCACAA TGTATACAAATGTCGAATCACTATGTTGTACACCTGAAACTAATATAACATTGTATGTCAATTATACTCAAATAAAAAAA -------------------------------------------------------------------------------- -- >Canis_familiaris TCAACATAA--TGCCTG----ACGACATAAGAGTT------ATTATCCACTGATC---AGAAATAATCA----------- ----TACAAATAGCAA---ACTATGTTGTACACCTGAAACTAAT---ATGTTATATATCAATTATACCTCAATTAAGAAA ---AA---ATAAAGAAC-CA---ATTACCCCCC-ATTACCTACAGCTTCAAATCATAA-CTCTCAGCTGGA-------TT GT >Felis_catus TCAACATAA--TGCCTG--ACCCACAGTAAGAGCT---ATTATTATACACTGATC---AGATATAATCA----------- ----TACAAATACCAA---ATCATGTTGTACACCTGAAACTAATATAATGTGACATATCAATTATACCTCAATTTAAAA- --------AGAAATAAC-CA---ATTGCTCCCC-ATTTCCTGCAGCTCCAAGTCCTAA-CTCTAAGCTGCATCTACACTG GT >Manis_pentadactyla TAAACATAA--TGCTCA--GCACATGGTGAGAACT------ATTATCCACTCGTC---AGAAATAATTC----------- ----TTCAAATACCAAATCATTATGTTGGACATCTGAAACTAATCTAATGTTGTATGTCAGTTATACCTCAACTNNNNNN NNNNN---NNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NN >Equus_caballus TCAACGTAA--TCCCAG--GCACATGGTAAAAGCT---ATTATTATCCACTAATC---AGAAATAATTA----------- ----TATAAATATTGAATCATTATGTTGTACACCTGAAACAAATATAATGTTATATGTCAATTACACCTCAATTAAAAAA AGGAA---GAAAGAAAC-CA---ATGACTCCCC-ATTACCTACAGCTTCAAATCCTAA-CTCTCAGCTGCA-------TG GT >Ceratotherium_simum TCAACATAA--TCCTGG--GTACATGGTAAGAGCT---ATTATTATCCACTAATC---AGAAATAATTA----------- ----TACAAATACTGAATCATTATGTTGTACACCTGAAACTAATATAATATTATATGTCAATTATACCTCAATTAAAAAA ---AA---AAAAG-AAC-CA---ATGACTTCCC-ATTACTTACAGCTTCAAATCCTAA-CTCTCAGCTGCA-------TG GT >Myotis_myotis TCAA--TAA--TGCCTG-----------------------------------ATC---AGAAATAATTA----------- ----TACAAATACCA--TTGTTATGTTGTACATATGAAACTA-----ACATTATATGTCAATTATACCTCAGTTTTTTAA GAAAA---AGAAGTAAC-CA---ATGACTTCCC------------------ATCCTAG-CTCTCAGAGGTA-------TG GT >Rousettus_aegyptiacus TCAACACAA--TGGTAGGAGCACATGGTAAGTGCTATCATTATCATCCACTGATC---AGAAATAATTA----------- ----TACAAATATCAAATCATTATGTTCTATACTTAAAACTAATATAATGTTATATGTCAATTATACC------------ ----------------------------------------TACAGCTTCAAATCCTAA-CTCTCAGATGCT-------TG GT >Sus_scrofa TCAATATAA--TACCTG--GTACATGATAAGAGCT------ATT--CTACTGAT-------------------------- -------------------------------------------------------------------------------- --------AGAAATAAT-CA---A-GACTCCCC-ATTACCTACAGCTGCAGATCCTAATTTCTCAGCTGCA-------TG GT >Bos_taurus TCAATATAA--TTCTGG--GTATATGGTAAGAGCT---ATTATTATCCACTAATG------------------------- -------------------------------------------------------------------------------- --------AGAAATAAT-CA---A-GACTTCCC-ATTACCTGCAGCTTCAAATCCTGA-TTCTTAGCTGTG-------TG GT >Condylura_cristata TCAACATAA--TGCCTA--ACACACGGTAAGAGTTACTGTTATT----ACTCATG------------------------- -------------------------------------------------------------------------------- --------AGAAGTAAT-CA---ATGATTCCCCCATTACCTAC--CTTCAAACCCTAA-TTCTCAGTCATG-------TG AT >Sorex_araneus TCAATATAAGTTGTTTG---------GTAAGAGCT---GTTATTACCCCCTAATC------------------------- -------------------------------------------------------------------------------- --------GGAAATAAACCC---ATGGTCCCCC-ATTGCCTATAGTTTCAAATCCTCT-CAGTTAGTTGCA-------AG GT >Homo_sapiens1 TCAACAAAA--TGCCTGGC--ACAAGGTAAGAGCC---ATGATAATCCACTGATC------------------------- -------------------------------------------------------------------------------- --------ACAAATAAT-CA---ATGACTCCTC-ATTACCTACAGCTTCAGATCCT---CTCTCAAGGACA-------TG GT >Homo_sapiens2 TCAACAAAA--TGCCTGGC--ACAAGGTAAGAGCC---ATGATAATCCACTGATC------------------------- -------------------------------------------------------------------------------- --------ACAAATAAT-CA---ATGACTCCTC-ATTACCTACAGCTTCAGATCCT---CTCTCAAGGACA-------TG GT Dog474_LINE >L1MA9_3END -------------------------------------------------------------------------------- --------------TT---TTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAAC GTGATGTTTTGATATACGTATACATTGTGAAATGATTACCACAATCAAGC---TAATTAACATATCCATCACCTCACATA GTTACCATTTTTTTG-----TGTGTGGTGAGAACACTTAAGATCTACTCTCTT-AGCAAATTTCAAGTATACAATACAGT ATTATTAACTATAGTCACCATGCTGTACATTAGATCTCC--AGAACTTATTCATCCTGCATAACTGAAACTTTGTACCCT TTGACCAACATCTCCCCATTTCCCCCACC-C-----------CCCAGCCCCTGGCAACCACCATT--------CTACTCT CTGCTTCTATGAG------------------------TTTGACTTTTTTAGATTCCACATATAAGTGAGATCATGCA--- ---GTATTTGTCTTTCTGTGCCTGG-CTTATTTCACTT-AGCATAATGTCCTCCAG------------------------ ------------------------------------------------------- >Canis_familiaris TAATATTGTTCATGAGTTTCTAAAATTAGAATTAAGG-TACTTGCACAG-----TTATTTT---TAATTTGTTTGAT--A GC------------TTAAGTCTTTTATTTTAAT------TAATCTACATAT-GACATTCTATTAGTTTCAGGTGTACAAC ATAATGATTCAATATTTTTATATATTACAAAATAAGCATTACAATATGCC---TCATTAGC--AACCATCATCACACATA GTTACAAATTTTTT------CTTGTGAAGAAGACTTTTAAGATTTACTTTCTTAAGCAAGTTTTAAATATGCAATACTGT ATTATTAATGATAGTTACCATGCTATATATTATATACCCTACTCATTTATGT------CATAACTGGAGGTTTGTACCTT TTGACC-CCCTTCACCCATTTTGCCCACT-C------TATACCCTTATCACTGGCAACCACCAGT-TGCCATTCTATTCT CTGTATGTAA----------------------------------TCTATTCTCTGTATGTATGAATTTGTTTGTTTAGTT TTGGTAGTTGTCTTCCT----CTGA-ATTATTTCATTTAAACATAACTT----------TTTTTTTTAACCATAAC---A CC----AATACAAGGCATAATTTTTCTTAGTGAATATTTAGGAA------AATGC >Felis_catus TAATATTGTTCATGTATTTCTAAAAATAAAATTGAGG-TACTTTCACAA------TTGTTT---TTATTTTTTTGGTAGA GC---TGAGCTTGATTAGGTCTTTTATTTTAATTAAACACAATTTATATAT-GACATTACTTTCAT---ATATATATAAC ATAATAATTCAATATTTGTATATATTACAAAACGATCACCACAATAAGTC---TAGTTAAC--ATCTGTCACCATACATA GTTACAAATGTTTTCTT---CTTGTGATGAGGACTTTTAAGATCTACTCTTTT-AGCAAGTTTCAAATATTCAATACAGT GTTATTAATTATAGTCACCATATTGTTTATTATATACCC--ATGACTTATTT------TATAACTGGAAGTTTGTACCTT TTGACC-CCTTTCACACATTTTGCCTACC-C------TCTACCCTCATGTCTGGCAACTACTAATCTGTTCTTCTATTTT CTGTGTCTATAAGGGTTTTTTTTCCTTTCCTTTTTTTTTTAA--ATTTTAGATTCCACATATAAGTGAGATCATATG--- ---GTAATTGACCTTCTCTGTCTGA-ATTACTTCACTTAAATGCT--------------TTTTTCTCTACTATAAC---A CC----AATATAAGCCAGAACTTTGCTTAGTGAATATTTAGGAAAATGAGAGTGC >Manis_pentadactyla TAATATTGCTCATATGTTTCTAAAATTAGAATTAAGG-TACTTGCATAG---------------CTGTT-GCTTTGTAGA GC---AGAGCTTGGTTAGGTCTTC-ATTCTCATTAGGTATGACTGGGAGAT-GACAT-------ATTTTGGGTGTCCGAC ATAAGGAGGTGATA--CATACACACTGTGAAATGATCAGCGTGACATGACATACAGTTAAC--ATGTGTCACTGAATGTA GTCAAAAAAAGCTCT-----TTTCTTATGATGATTTTTAAGATGTATTCTCTT--------------------------- ---AGTAAGTGTAGTCCGTATGTTGTGCATTACATCACC--ATGACTT-TTTAATTTTTATT-TTGTAAGCTTGTACCTG TTGACC-CTCTTCACTCATTTAGCCCACC-C------------CCTGCTCCTGCCAAC----AGT--------CTGTTCT CTGTATCTATCTG----CTTG--------CTTTTGTTTTTAA--TGCTTAGATTCCACATATGAGTGAGATCAT------ ----TATTTGTCTTT------TTGA-CTTATTTTACTTCAG------------------AGTTTTTTCATTACAAC---A CG----AATACAAACCACAA-TTTGCTTAGTGAATATTTAGGAAAATGAGAATGC >Sus_scrofa TAATGTTGCTCATGTATTCCTAAAATGAGAATTTAAG-CACCTGTGCAGCTTTTTTTTTTT---TTTTTTTTTTGGTAGA GC---AGAACTTGATTAGGTCTTTTTAAAAAATGAGATATAATTAACATAT-GACATTATATTAATTTCATATATACAGC ATAAGGTGTTGATATTTGTATATATTGCAAAATGATCACCACAATGGTTC---TAGTTAAC--GTCTGTCACCATATATA GTTACAAAAATTTAATTTT-CTCCTGATGAGGAATTTAAAGTTCTATTCAATT-----------------------CATT ATTATCAACTATAGCCGCCATGATGT------------------ATTTATTT------GATAACTGGAAGTTTGACCCTA TTTACC-CGTTTTGCTCACACTGCCTTCCTCCCCCTACCTGCCATCACCTCTGGCAACCATCAGT--------TTGTTCT CCGGATATATGACGGGGTTTT---------TTTTAATTTTAA--TTTTTAGATTCCACATATAAGTGGGATCATAC---- ------TTTGTCTTTCTCTGCCTGA-CTTATTGCACTTACATACAGCTT----------TTTTTCTTTACTGGGAC---A TC----AGTGCAACTCACAGTTGGGCTTAGTAAATATTTAGGAAGATGAGAATGC >Bos_taurus TAATATTGCTCCTGTGTTTCTGAAATTAGAGTTAAGC-TACTTGCTCAG-----------T---TTTTCATTTTTTTAGA AT---GGAATTTAATTACTTCTTTTTTTAAAATGAGGTATAATCACCTTAT-------ATATTAGTTTCATGTGTATCAT AC------------TTTGTATATAATGTAAAATGATCAT-------AGTC---TAGTTAAC--ATTTGT-----TACATA GTTGCAAATTTTTTGTTTTCCTCCTGATGAGGTCTTTTAAGATCTACTCTTTT-AGAAAGTTTCATATATGCTGTTAGTT ATTGTTGACTATAGTCAGCATGCTGTCCATTACATCCCCATGACATTTATTT-TTTTGTATA-----GAAGTTGTACCTT TTGAAC-TTACTTACCCGTTTTTCTCATC-ACCACTCCAACGCATTACCTATGGCAACCACCAAT--------TTGTTCT CTGTATCTATGAGGTTTTTGT--------TTGTTTGTTTTGG--TTTTTTCGATCTACATATAAATGGGATCATACA--- -------TTGTCTTTCTCTGTCTGACCTTATTTCACATTCATACAGC------------TTTTTCTTTACTGTAGC---A CA----AATATTGTTCACAA-TTTGCTTAGTAAATATTTAGGAAGATGAGAATGC >Equus_caballus1 TAATATTGCTCATGTGTTTCTAAAATTAGAATTAAGG-TACTTGCACAG----------CT------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------TTCTTCTTCACCTTAAC---A CC----AATGCAAGCCACAA-TTTGCTTAGTGAATATTTAGGAAAATGAGAATGC >Equus_caballus2 TAATATTGCTCATGTGTTTCTAAAATTAAAATTAAGG-TACTTGCACAG----------CT------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------TTTTTCTTTACCTTAAC---A CG----AATACAAACCACTA-TTTGCTTAGTGAATATTTAGGAAGTTGAGAATGC >Equus_caballus3 TAATATTCCTCATGTGTTTCTAAAATTAAAATGAAGG-TACTTGCACAG----------CT------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------TTTTTCTTTGCCTTAAC---A CG----CATGCAAGCCACAA-TTTGCTTAGTGAATATTTAGGAAGATGAGAATGC >Ceratotherium_simum TAATATTGCTCATGTGTTTCTAAAACTAGAATTAAGG-TACTTGCACAG----------CT------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------TTTTTCTTTAATGTAAT---A AC----AATGCAAGCCACAA-TTTGCTTAGTGAATATTTAGGAAAATGAGAATGC >Myotis_myotis TAATATTGCTCATGTGTTTCGAAAGTTAGAATGGAGG-TACTTGTACAA---------CTT------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------TATTCTGTAACAATAAC---A CC----AATACAAGCCACAA-TTTTCTTGGGAAATAGTCAGAAAAATTAGAATGC >Rousettus_aegyptiacus TAACATCACTCATGTGTTTCTAAAATTAGAGTTTAGG-TACTTGGACAG----------TT------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------TTTTCTTTAACTCTAAC---A CTGATCAATACCAGGCACAA-TTTGCTTAGTGAATGTTTAGAAAAATGAGAATGC >Condylura_cristata T-GTATTGTTCATAGAGTTCTAAAATTAGAATTAAGGCCACATGAACTG----------CT------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------TTTTTCTTTACTATAAT---A AC----AATACAAGTCTCAATTTGTTTTANNNNNNNNNNNNNNNNNNNNNNNNNN >Erinaceus_europaeus TAATATTGTTTTT---TCTCTAAAATTAGAATTAGGA-TACTTACACAGCTTA------TT------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------CTCTACTTCACC---AT---A CC----AATATAAGTGCCAA-TGTATTTGGAAAAGGTAAATAAATTAATGGGTAC >Homo_sapiens TAATATTCTTCAATGGTTTCTAAAATTATTACAAAGG-TTTTTGC--AG----------TT------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------ATTTTCTTTGCTGTAAC---A TC----ATTGCA-----------TACTCAGTAAATATTTAGGGACAGAAGAATAC Dog482_LINE >L1MA9_3END -------------------------------------------------------------------------------- ---------TTTTTCCAGCTTTA---------------------TTGAGGTATAATTGACAAATAAAAATTGTATATATT TAAGGTGTAC----AACGTGATGTTTTGATATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATC CATCACC-TC---------ACATAGTTACCATTTTTTTGTGT-------GTGGTGAGAACACTTAAGATCTACTCTCTTA GCAAA---TTTCAAGTATACAATACAGTATTATTAACTATAGTCACCATGCTGTACATTAGA-TCTCCAGAACTTATTCA TCCTGCATAACTGAA--ACTTTGTACCCTTTGACCAACATCTCCCCATTTCCCCCACCCCCCAGCCC------CTGGCAA CCACCATTCTACTCTCTGCTTCTATGAGT-----------TTGACTTTTTTAGATTCCACATATAAGTGAGATCATGCAG TATTTGTCTTTCTGTGCCTGGCTTATTTCACTTAGCATAATGTCCTCCAGGTTCATCCATGTTGTCACAAA-TGGCAGGA TTTCCTTCTTTTTTAAGGCTGAATAATATTCCATT--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------GTGTATATATA----------------CCACATTTTCTTTATCCATTCATCCGTCGATGGACAC-TTAGGTTGN TTCCATATCTTGGCTATTGTGAA--------------------------------------------------------- ----------------- >Canis_familiaris GTGCAGC--TTCTCAAAATTCTGGTCATGACTCAGT--GGACACACGTTAAGATGTTTCCC-AAAATAA---TTCTTACT CCT---TTATTTTTCCATTTCTAAATT----TTGTCTTTATGAACTGAGTTATAATTGACATAC-AACATGA-----GCT TCAGATATAC----AACATAACGATTTG-TATTTGTATATATTGTAAAATGATCAACACAAAAAGCCCA--TAAC--ATC CATCATCGTCAGTTGTC--ATATATTTAGAAAACTTTTCTT--------GCAGTGAGAACTTTTAAGAGCTACTCTCTTT GCAAC---TTTCAAATACGCAATACAGTATTATTAATTAGAGTTGCTGTGCTTTGCATTACATTCCTTATGACTTTTTTT -----TATAACTTATTTATTTTATGCCTTTTATCCCTC-TTTATCTATTTCTTCCATCCCAAACCCC-CACCTCTAGCAA TTACCAATCTGTGCTCTATATTTCTGAGTTCTGTTTTTTGTTTGTTTTTTTAGATACCTCATATAAATGAGATCAGAGAG TATTTGTCTTTCTCTGTCTGACTTAGTTCACTTAGCATAATG-CCTCAAGGTTTGTCCACGTTGTCACTAA-TGTGAAGA TTTCCTTCTTCTTTGTAGCTAAATATTATTCCATTTCTTTTTTTTTTTTTTTTAATTTTTTTTTTTTTTATTTATTTATG ATAGTCACAGAGAGAGAGAGAGCGCGGCAGAGACACAGGCAGAGGGAGGAACAGGCTCCATGCACCGGGAGCCTGATGTG GGATTCGATCCCGGGTCTCCAGGATCGCGCCCTGGGCCAAAGGCAGGCGCCAAACCGCTGCGCCACCCAGGGATCCCTAT TATTCCATTTCTATATATCTTTTTTCTTTATCCCTACATTTTCTTTATTCATTCATCTATTGACTGACAATTTAGATTGT TTCCAAATATTGGCTAA---------TTCTTATTCAT---AAT----ATGAGCAATTTAATGGAATATCCTC-TCTTTGT TTATATTTGATTTATTT >Felis_catus GGACAGTGCTTCTCAAAATGTTGGTCATGGCCCAGT--GGGCACATACTAAAAGGTTCCCC-AAAACAA---TTCTTACT CTT-----TTCTTCCCATTTCTAAACT----TTGTTTTTACGACTTGACGTATAACTGGCATAT-AACATTA-----GTT TCAGTTATAC----AACATAATGATTCAACATTCATATATATTATAAA---ATCACCACGATAAGGCTGGTTAAC--ATC CAT-ATCGTCAGTTGTCATATATAGTTACAATTTTTTTTTCTT------GTAATGAGAACCTTTAAGAGCTACTCTCTTT GCAAC---TTTCAAATAGGCAATATGG-ATTATTCATTAGAGTTGCCATGCTGTATATTACATTTTTCATGACTCATTTA TTT--TATAACTGGA--AGTTTGTGCCTTTTGACCTCC-TTTACCCATTTCTTCCATTCCCCAACCC-CACCTATAGCAA CCACCAATCTGTGCTCTGTATTTACGAGCTTAGTT-----TTTGTTTTTTCAGATTCCGCATATAAGTGGGATCAGAGAA TATTTGTCTCTCT--------TTTATTTCACTTAGCATAATA-CCTCAAGGTTCATCCATATCGTTACGAA--TTCAAGA CTTCCTTCTTTTTTGTGACTGAATATCATTCCATT--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------ATATACATATATTTCTTTCCTCTGTATACTCATTTTCTTTATCCATTTANNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNN---------NNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNN >Manis_pentadactyla GGGCAGTGGTTCACAAAGTTTTGTGTATGACCCAGT--ACGTACACATTGAAATGTTTCCC-AAAACAA---TTCTTCCT TTT-------TTCTCAATCTCTAAATTTATTTTATTTTTTTTAATTGAGACATAATTGACATGT-AACATTATATTGGTT TCAGGTATACTGTTAACATA---CTTCCATATTTGTAGATACTGTGAAATGAT---CACGATAGGTCTACTTAAT--ATC TATCACC------------ACACAGTTACAGAATTGTTTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNN---------NNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNN >Equus_caballus GTGCAGTGGTTCTCAAAATTCGGGTTATGACCCAGT--GCACATGCACTAAAACGCTTCCC-AAAACTA---TTGCTACT CTT------CTTTCCCATCTCTGAATTTATTTTATTGTTTCAG-CTGAGGTGTAATTGACATAT-AACATTCTATTAGTT TCAGACGTGC----GACATAATGATTCAATATTTGTATGTATGGTAAAACGATCACCACAGTGAGTCCAGTTAAC--ACC CATCCCA-TC----------CATAGTTACAAAATTTTGTTTCTTTTAAGTCGATCAGAACTTTTAAGGTTTACTCCCTTA GCAAC---CTTCAAATACGCAATGCAGTGCTGTTAACTATAGTCAGTATGCTGTTCATTATATTCCTCGTGACTTATTT- -----TAAAACTGGA--AGTTTGTACCTTTTGAGCCCC-TTCACCTATTTCACCCAACCCCCACCCCTTGCCTCTGGCAA CTACCAGTCTATTCTCTGCATCTGTGAGTTGAGGGGTT--TTCTGATTTTTAGATTCCCCACCTAAGTGAGATCCCATGG TTATTTGTTATCTCTATCTGACTTATTTCACTTAACATAATGTCCACAAGGTCCAAACATATTGTCACAAATTGGCGAAA TTTCCTTCTTTTTTACTGCTGAATAGTAGTCTATT--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------ACATATA-----TTTCTTTACCCATTCATTTTCTTTATCGATTCCGCTATCCATGGACAG-TTAGGTTGT TTCCATATCTTGGCTAA---------TTCTTACCCTT---AGTAAGTATCA-CAATCCTCTGGGATATGTTG-TCATTGC TTATATTTGATTTATTT >Ceratotherium_simum GTGCAGTGGTTCTCAAAATTTTGGTTATGACCCAGT--GCGTACACACTAAAACATTTCCC-AAAACTA---TTGTTACT CTT------TTTTCCCATCTCTAAATTTATGTTACTTTTT--AATTGAGGTATAATTAACATAT-AACATTATATTAGTT TCAGATGTAC----AATATAATGATTCAATATTTGTATATATTGTAGAATGATCCCCACAAT--GTCTAGCTAAC--ATC CATCCACATT---------ACATAGTTACAAAATTTTGTTTTCTT----GTGATGAGAACTTTTACAATTTACTCTCTGA GCAACTCTCTTCAAATATGCAATACTGTATTATTAACTATAGTCATCATGCTGTACATTATATTCCTCATGACTTATTT- -----TAAAACTGTA--AGTTTGTACCTTTTGACCCCC-TACACCCATTTCACCC--CCACCACCCC--ACCTCTAGCAA TTACCAAACTGTTCTCTGTATCTATGAGCTCGGGGTT---TTTTGTTTTTTTGATTCCACAGATAAGTGAGATCACATGG TATTTGTCTTTCTCTGTCTGACTTATTTCACTTAACATTATGCCCTCAAGCTCCATCCATGTTGTCACAAA-TGGCAAAA TTTCCTTCTTTTTTATGGCTGAATAATATTTTACT--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------GTATATA-----TTTCTTTATCCATTCATTTTCTTTATTGATACATCCATCAATGGGCAG-TTAGTTTGT TTCCATATCTTGGCTAA---------TTCTTATTCTT---AGT----AT-AGTAATTCACTAGGATATTTTC-TCTTTGC TTATATTTGATTTATTT >Sus_scrofa GTGCAGTAC-----------------------------ACACATACACTGAGACATTTCCC-CAAACAA----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------TTCTCACTCTG---AGG----ATGAGAAATTCACTAGGATATTTCC-TCTTTGC TTAAAAATTATTTATTT >Bos_taurus GTGCAGG-------------------------------GTACACACACTGACACATTTCCCCAAAACAT----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------TTCT--CTCCT---GCT----ATGAGAAGTTCACTGGGATATTTTTGTCTTTGC CT-TATATTCCTTATTT >Myotis_myotis GAGCAAGGGTTCTCAAAATT-TGGTCATGACTCAGTACACACACACACTGAAACATTTCCCAAAAACAA----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------TTCCTACCTTT---ACT----GGAAGTAATCCACT------------------- ----------------- >Rhinolophus_ferrumequinum GTGCACAGGTTCTCAAAATC-TGGCTATGACCCGGT--GCACACACACTAAAACGTTTCTT-AAAACAA----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------TTCTTATTCTT---ACT----ATGACTAATTCACTGGTATATTTTC-TTTATTT TTATATTTTATTTAATT >Condylura_cristata ATGCAAAGATTCGTAAAATTTTGGTGAGGAC-CAAT--GCTCACATACTAAAACATTTTCC-AAAATGA----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------TTCTTATTCTT---ACT----ATCAGTTGTTCACTAGAATATTT---TCTCTGC TTACATTTGATTTATTT >Sorex_araneus GTGAAACACTTCTCAAAATAATGGTGATATACCAGT--GTTCAC-CAGTAAAATGTTTCTCTTATGCAA----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------TTCTTATTCTT---CCT----ATGATTAATTTGCTATGATATTTTA-TTTTTGT TCATA-----TTTATTT >Homo_sapiens GCACAATGGTTTTCAAAATGCTGGTTATGACACAGT--GCACATATACTAAAACATTTCCC-AAAGCAA----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------TCCTCATCCTT---ATG----AAGGGTAATTCACTGGGATATTTTCC-CTTTGC TTATATTTTATTTATTT Dog485_LINE >L1MA9_3END ------------------------------------------------------------------------------TG AGGTGATGGATATGTTAATTAGCTTGATTGTGGTA--------ATCATTTCACAA-TGTATACGTATATCAAAACATCAC GTTGTAC--ACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAAT------AAAGC---TGGAAAAA------ ------------------------------------------------------------------ >Canis_familiaris ATACAACGTTTAACAG--GAG--AACAAAGGACACTGTTGACTTT--TTCTTGACTTT---GAGATGAATATTTT----- ----------GGTTTTAGTGAATGCTACAGTGGCA--------ATCATATTGCAA-CATATAAA-ATAGCAGATCATCAC ACTCTATGGGCCTTAGGTTTACACAG-TGTTTTATGTCAATTATATCTCAAT-TAAAAAAAACTAATGTAAAAAA---CA AAAGAATATTTC---TAACGT--ATCATTAAGATGTTGGCAGCAAGTTTTTGG-TAGATATCTTCA >Felis_catus ATACAATGTAGAACAGAAAAGACAACAAAAGACATTGTTGACTTT--TTTCTGACTTT---GGAATGAATATTTT----- ----------GGTTTCAGCTAATGCTATAGTGGTA--------ATCATATTGCAG-TACATAAGTGTAGTAAATCATCAC AGTGGGG--ACCTTAAGTTTACACAA-TATTGTATGTCAATTATATGCCGATTTAAGAAAATCTAATGT---------AA AAA-AATATTTC---TACCTTTTAACATTAAGATGATGGCTTTAAGTTTTTGG-TATATACCCTCA >Manis_pentadactyla ATACAATGTAGAATAGAAAACAGAACAAAGGACATT-----------TCTTCGACTTT---TAA---GGTATTTT----- ----------GGTGTAAGCTAATGCTACAATAATA--------ATCATAGTGTAATTATATACATGTATCAGATCAACAC ATTGCAC--ACTTCAAACTTACATAA-TATTGTATGTCAATTATGTCTCAACTT--AAAAAGCTAATGTAAAA-----GA AAAGAACATTCG---TAACTTCTATCGTTAA-ATGTTGGCCAT--GTGTTCAG-TAGATACCCTTA >Equus_caballus TTACAATGTGGAATAGAAAAGAGAAGAAGAGAC--TCTTGACTTT--TTCTTGATTTT---AAAATGAATATTTT----- ----------GGTGTTAGCTAATGCTGTAACACTGTAATGCTAATCATATTGCAA-AATAGAAATGTATCAAATCAATGA ACTGTAC--ACCTTAAGC-TATACAA-TGTTGTATGTCAATTATATCTCAGTTTTTAAAAAGCTAATGTGAAA-----AA AAAGAATATTTC---TAATTTTTAGCATTAAGATGTTGGTTTTAAGTTTTTGG-TAGATACCCTCA >Ceratotherium_simum ATAGAATGTGAAATAGAAAG---AACAAAGGACATTGCTGACTTT--TTCTTGATTTT---AAAATGAATATTTT----- ----------GGTGTTAGCTAATGCTGTAGCAGTGTAGTGCT-ATCATACTGCAA-TATATAAATGTATCAAATCAACAA ATTGTAC--ACCTTAAAC-TACACAA-TGTTGTATGTCAGTTATA-CTCAATTTTAAAAAAGCTAATATGAA------AA ATGGAATATTTC---TAACTTTTTTCATTAAGACATTGGTTGTAAGTTTTTGG-TAGATACCCTCA >Sus_scrofa ATAAAATGTGGGGGAAAAAAGAGAAAAGAGGAC-TCATTGACTTT------TTACTTT---------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AA AATGAGAATTTT---TACCTTTGATTATTAAGATGCTCATTGTAAGTTTTGGG-TAGATAACTTTA >Bos_taurus ATAAAATATGGAACAGAAAGGAGAAAAGAGGACATCACTGACTTT-------GACTTC---------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AA CATGAGTATTTT---TACTTTTTAT-ATTAAGATGCTGGCTATAAGTTTTTGG-TAGTTACCTTAA >Myotis_myotis GTACAAGACAGAACAGAAAAGAGAACAAAGGATATAATTTACTTT--TTCTCGAGTCT---------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AA GATGAATATTTC---TATCATTTATTATTAAGATGCTGGCTGTGA--TTTTGG-TATATGTCCTCA >Rousettus_aegyptiacus GCACAATGTGGAGCAGAAAAGAGGACAAAGGAAA------ACTTTCCTCTTTGACTTT---------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AA AATAAATATTTC---TAATGTTT---ATTAAGATGTTGGATATAATTTTTTTGGCACTTACCATAA >Condylura_cristata ATACAATGTAAAATAGAAAG---AACAAGGGACATTTCTAACTTT-CTCCTTTACTAT---------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AA AGT-AATATCTC---TAGTTCTTTTCATTAACATATT------AAGTTTTTGG-TAGATGCCCTCA >Sorex_araneus ATAAAAGAT-GAACAGGAAGAATAACAAAGGACACTACTGACTTT--TTTCTGATTTT---------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AA AATAAAGA-GTC---TAACTTTCATCATTAGTGTGTTGGCTATAACTTTTTGC-TGGATAATCTCA >Homo_sapiens GAAATAAATAGAATGGAGAAAAAGAAAAAG-------TTAACCTT--TTGTTTACTTT---------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AA AATGAGTATTTC---TAACTTTTATTATTAAGGAGTTTGCTGTAAGTTTTTTGCTAGAAACCTTCA Dog497_LINE >L1_CARN7_3END -------------------------------------------------------------------------------T TTTTTTATTTGAGTATAATTGACATACAATGTTATATTAGTTTCAGGTGTACAACATAGTGATTCGACATTTGTATACAT TGTGAAGTGATCACCACAATAA-GTCT-----AGTTACCATCTGTCACCATACAANGTTANTACAATATTATTGACTATA TTCNCCATGCTGT------------------------------------------------------------------- -------------------------------------------------------------- >Canis_familiaris GGCAGGTTTTAAGGTTTTTCTCAAAGCCCTCTCTATTTTGTGTATTTTATCA---GTATATTTATGTATG---TATGTAC ATTTTTATTGGGGTATAATTGACATACAATGTTATTCTAGTCTCAGATATATAACACAATGAATTGAGATTTGCATACAC TGTGAAATGATCACCACAGTAAGGTCT-----AGATAACATTTTTCACCATACTTCCTTACAG--ATTTTTTCTTGTG-- ----------------TATTTATTTTATTGGATCTTGTATGTTTATTTTAATTAATAAACATTATTTAATTATTT---AA TTAAAC---TTTTGGGGGGA----GGCAATTGTAGATTCACATGC----AATTGTAAGAAAT >Felis_catus GGCAATTTATAAAGTCTTTCTCAAAGCTCTCTATATATTGTGTATTTTATCA---GTGTATTTATGTATG---TATATGT GTTTTTATTGAGGTATAATTGAC-TACAACATTATCTTAGTCTCAGGTGTGGAACACAATGAATTGAGATTTGCATATAT TGTGAA---ATCACTACAGTAA-GTCT-----AGTTAACACTTTTCACCATACATAGTCATAAT-TTTTTTTCTTGTG-- ----------------TATTTGTTTTATTGAAT---------------------------------------CTT---CT ATATGTATTTTTTGGAGGTAATTGGGTTATTGTAGATTCACATGT----AATTGTGAGAAAT >Manis_pentadactyla AGTGGCTTATAAGGGTTTTCTCAAAGTCTTCTATATTTTGGGTATTCTGTCA---GTCTATTTATATTTT---------- -----TGTTGAGGTATAATTGATAAATAACATT------GTTTCAAATGCACAACATAATAATTTGATGTTTGTATGTAT TGTAAAATGATCAC--CATTAA-GTCTAGGTAAGGTAACATCGGTCATCATACATAGTTACAAAATTTTTTTTTCATG-- ----------------TGTTGCTTA------------------------------------------------------- -----GAGTTTTGTGGGGGA----GGTATTTGTAGATTCACATATCAAAAATTCTAAGAAAT >Myotis_myotis GGCAGTTTATAAGGTCTTTCTGAAAG---------TGCTGTGTATTTTATCA---GTTTATTTATGTTTT---------- -----TATTGAGGTATAATTGACATAGCAT----TGTTAGTTTCAAGTGTGTAACATAACGATTCCAGATTT-TTTATAT TGTGAAATGATCATTTCAGTAA-GTCT-----GGTTAACCTCCATAACCATATATAGTTACAA--ATTTTTTCTTGTG-- ----------------TATTTATTT-----------------------------------------------TTT---AA CTAAACA--TTTTTGGGGTA--------GTTGTAAATTCACATGC----AATTTTAAGAAAT >Rousettus_aegyptiacus AGCAGTTTATAAGATCTTTATCAAAGCCCTCTATATTTTGCGTAT----------TTATGAGTATGTTTT---------- -----TATTGAGGTAT-ATTGACATATAACATTGTGTTAATTTCAAGTGTACAACACAATGATTCCATGTTTGTGTATAT TTTGAAATGATCACCACAATAA--TCT-----ATTTAATATCCATTACTATATATTGTTACAAAATCTTTTTCTTACG-- ----------------TATTAATTT-----------------------------------------------TTT---CA TTAAAAAT-TTTTGGAGGTA--------ATTGTGCATTCACATGC----AATTGTAAGAAAT >Sus_scrofa GGCTGTTTATAAGGTCTTTCTCAAAGCCCTCCATATTT------------CA---GTGTGGTTATTTTTT---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AA TTAAACTCTTTTTTGAGTTG---------CGGTCACTTCTTGAGC----AGTTATAAGAAAT >Bos_taurus AGCAGTTTATAAG----TTCTCAAAGCCCTCTATATTTTGTGTATTTTTTCA---GTGTAGTTAATTTTT---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AA ATAAAAATATTTTTGAGTTG---------CTATAGATTTATGTTC----AGTTGTAAGAAAA >Equus_caballus GGCAGTTTATAAGTTCTTTCTCAAAGCCCTCTATATTTTGTGTATTTCGTCA---GTCTGTTTATTTTTT---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AA TTAAACCTTTTTTTGAGGTA--------ATTATAGATTCACGTGC----AGTTGTGAGAAGT >Tapirus_indicus GGCAGTTTATAAGTTCTTTCTCAA----CTCTATATTTTGTGTATTTTATCA---GTGTATTTATTTTTT---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AA TTAAACTT-TTTTTGAGGTA--------ATTGTAGATTCATGTGC----AGTTTTAAGAAAT >Condylura_cristata ATCAGTTTAGAAGGTTTTCCTTAAAGCACTTAAT-TTTTGCATATTTTGTTG---TTATACTTACTTTTT---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AG C--AACTT-TTTTTGAGATA--------ATTATAGATACACAAGT----AATTGTAAGAAAT >Uropsilus_gracilis AACCATTTATAAAGTCT---TCAAAATCATCTTTATCATGTACATCCTATCA---GTATACTTTTTTTCA---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------TT T-AAACTTTATTTTGAGGTT--------ATTGTAGATTTACATGT----AGTTGTAAGAAAT >Homo_sapiens GACAGTTTACAAGGTATTTCTCAAAGCCCTCTATATTTTGAGTACGTTATCA---GTGTTTTATTTTTTA---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AT T-AAGCTT--TTTTGAGGTA--------ATTATAGATTCACACAC----AGTTGTAAAACAT Dog504_LINE >L1MA9_3END -------------------------------------------------------------------------------- ------------TTTTTCCAGCTTTATTGAGGT-----------ATAAT-------TGACAAATAAAAATTGTATATATT TAAGGTGTACAACGTGATGTT----------TTGATATACGTATACATTGTGAAATGAT------TACCACAA------- -------------TCAAGCTAATTAACATATCCATCACCTCACATAGTTACCATTTTTTTGTGTGT-------------- ------------------------------------------------------------------ >Canis_familiaris CACCCCC--CTGACTACTTAAGGGTAGATGAGTTCTTTTATTTTCTTCCTCC------GGCTGACGCCCTG---ACTCTT AACCACTT---TTTTTTGGTCTTTTTGTGTTGT-----------TTTGTTTTTTGGTAAGAGATAAGGTTAGCATTTATT TA---TTTATTGCATGTTTTTGCATCTTTGATTTTTTTCCAATTTTATTGAGGTATAATGGACAGAACAACAT------- -------------TCTATCAGTTTGAGGTATACA-------GAGGAATGACTAGATTT-----------GTCCTTCACTG TTT---AGAAAAGGTAATGACAGT-AGAGTTCTTCATGAAAAA-ATAGAGTA-------CTCA-AA >Felis_catus CTCCCCT---AGACTGCTTAGGTGTAGATGAATTCTTTTATTTTCTTCCTCCTCCTCCTGCTGAGGCCCTG---ACTCTT CACCAGCA---CCCCC----ACTTTTTT--------------------TTTTTTGGTAAGAGATAGGATTAGCATTAATT TA---TATATTTCATGTTTTTACAC------TTTTCCCCCAATTTTACTGAGATATAATGGACA-AACAACAC------- -------------T----AAGTTTAAGGTGTACA-------GAGCAATGACTTGACTT-----------GTCCTTCACTG TTT---AGTGAAGATAATGACAGT-AGAGTTCCTCGTGAAAAA-ATAGGGTA-------TTCACAA >Phataginus_tricuspis NNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNN NNNNNNNN---NNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTATT TA---TTTATTTCAATTTCTTGCATCTTTTA--TTTTTCCAATTTTATTGAGATATAATCGACA-TATAATAC------- -------------TGTGTAGGTTTGAGGTGTATA-------GTATAATGACT----------------------TCAG-- ------AGTGGAGGTAATGACAGC-AGAGTTCTTCATGAAAAA-ATAGGGCA-------CTCATAA >Condylura_cristata CGCTCTTC-CAAACTACTTCCGTATAGACCAATATATTAATTTTCTTTCTCT---TCCTGCTAAGTCCCCC-----TCTT AGCCATAG---CTCCT----CCTTTTTGGGGGG-----------AGGGTGTGAGGGTAAGAGATAAAATTTGGATTTATT T-----------CATTATTTTGTATCTTTTATTTTTTTTCAGTGTCATTGTGTTATTTC------TATAACAC------- -------------TGTATGAACTTAAGGTATAGA-------GCATAATAACT-----------------TACCTTCATCC TTA---AACAGAGATAATGACAGC-AGTATTATTTGTGAAAATAATTGGACA-------CTCATTG >Uropsilus_gracilis CATTCCCTACAAAGTATTTATGTATAGAGTAATACTTTCATTTTCTTTGTCC---TCTTGTTAAGGTCCTG---ACTCTT AACTACA----CACTC----CCTTTGAGGGTGGTGGCAGGGGTAGGGGTGGGGGGAGAAGAGATAAAATTAGAATTTATT T-----------AGATTTTTTGTATCTTTTATTTTTCT--ATTTTTAT--TACTATTTA------TATAACATAATGAAT TGACCTTAATTAACATGTAAGTTTAAGGTGTAGT-------GTGTATTGACT-----------------TATTTTCACCC TTA---AGTAG---TGATGACAGC-AGAGTTATTTGTGAAAAA-ATACGACA-------CTCATAA >Sus_scrofa TACCCTC-----------------CAGATAAATTTTTAAATTTTCTTCCTCC---TCCTGCTAAGACGCTG---ACTCTT CACCCTTT------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------ACTGGAGATAAAGACAGC-AGAGTTCTTCCTAAAAAAAATAGGACATAGGACGTACATAA >Vicugna_pacos CACCACA-----------------CAGACAGATTCTTTAATTTCCTTCCTCC---TCCTTCTAAGGCTCTG---ACTCTT CAGTCTTA------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------ACTAGAGAT-ATGACAGT-AGAGTTCTTCATGAGAAA-ATAGGACC--------TCATCC >Equus_caballus CACCCCCT-CAGACTACTTAGGTGTAGATAAATTCTTTCATTGTTTTCCTCC---TGCCACTAAGGCCCTG---ACTCTT CACCCCTA------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------AGTGGAGATAATGATTGT-AGAGTTCTTCATGATAAA-ATGGGATA-------CTCATAA >Ceratotherium_simum CACCCCCT-CAGACTACTTAGGTGTAGACACATTCTTTCATTTTCTTCCTCC---TGTTGCTAAGACCCTG---ACTGTT CACCCTTA------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------AGTGGAGATAATGACTGC-AGAGTGCTTCATGAAAAA-ATAGGACA-------CTCATAA >Myotis_lucifugus CACCCCC---------------TGCAGACAAAT-CTTTCATCTCCTTCCTCT-CATCCTGCTAAGGCCCCG---ACTC-- -----CTC------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------ACTGGAGAT--TGACAGC-AGACTTCTTCTCGAGAAA-GCAGGACA-------CTCAGAA >Rhinolophus_ferrumequinum CATCCCC---AGACTACTTAGGTATAGACGAATTCTTTCATTTTCTTCCTCC---TCCTGCTAAGGCCCTG---ACTCTT CATCTTTA------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------ACTCCAGATAATGGCAGC-AGACCTCTTCATGAAAAAAATAGGGCA-------CTCGTAA >Homo_sapiens TACTGCA--CAGACTGTTGAGCTGTGGATGAACTCTTTAATTTTCTTCCCCTTCCAG-CTATAAGGGCCTG---ACTCTT CACTTTTG------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------GGTGGAGGTAATGACAGC-AGAGTTATACAGGAAGAA-ATAGAACA-------CTCACAA Dog507_LINE >L1_CARN7_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------TTTTTTTATTTGAGTATAATTGACATA CAATGTTATATTAGTTTCAGGTGTACAACATAGTGATTCGACATTTGTATACATTGTGAAG-TGATCACCACAATAAGTC TAGTTACCATCTGTCACCATACAANGTTANTACAA-TATTAT-----TGACTATATTCNCCATGCTGTACATT------- ACATCCCCATGACTTATTTA-TTTTATAACTGGAAGTTTG---------------------------------------- --------------------------- >Canis_familiaris TCTCTAATACAGATACTCTGTCTATAA-GAAACAGAGAAAGAAATTATGAT---ATCT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------TT-TTTT---TAATTTGATACC AAATCTTTTTAGGTACCAAAAATTTGGTACCAAACTTTGATACCAAAGTTGTTTTTTTAAACTGCAATATAATTGGCATA CAAGATTATATTAGTTACAGAGGTACAATATAGTGGTTTAATATTTGAATGTATTGTGAAACTGTCCACCAGAATAAGTC TAGTCAGCATCTATCACCTCATCTCACTACAACATGTTTTATTTTTGTGAT---AATTTTTAAGATCTACTCTTCTAGCA ACTTTCAAATATACAATACAGTATTATTAACTACACTTA----ACCTTTTGTTT---CTAAAGATCTGAATATAGATAAT GAGATAATTTTAACCATATCTATAAAA >Felis_catus TTTCTAATACAGATACTGTGTCTTTAG-AAGACAGA--AAGAAATTACAAT---ACCTTTTCTTTTTTAATTTTTTAAAT CAATGTTTATTTTTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTGAGCATGAGCAGAGGAGGGGCAGAGAGACAGAGG GAGACACAGAATCCGAAGCAGGCTCCAGACTCCGAGCTGTCAGCACAGAGCCCAATGTGGGACTTGAACTCACAAACTGC AAGATCATGACCCGACCTGAAGTCAGATGTTGAGCCACCCAGGCACCCCTACAATATCTT-TTTT---TAACTTGATACC AAATCTTT-------------------------------------AAGT--TTTTTTTTAATTGAAATATAATTGACAAA TAACATGATATTAGTTACTGGTATACTATATATTGGTTCAATATTTG----TATTGTGAAACTGTT-ACTACAGTAAGTC TAATTAACATCCATCACCTCACATCATTAC--ATT-TTTTATTCTTGTGAT---AACTCTTAAGATCTCCTCTTTTAGCA ACTTTCAAATATACAATACAGTATTATTAACTATAGTTA----ACCTCTTGTTT---CGAAAGATTTGAATATGGACTAT AGGATAATTTTAACCGTATCTATAAAA >Manis_javanica TCTCTAATACCAGTACTGTGTTTTTAA-GAGACAGGGAAAGAAAGTGCAAT---TTCT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------TTCTTTT---TTACTTGGTGCC AAGTCTTT-------------------------------------AAG--ATTTTTAAAAACTGAGATATAATTGACATC TAACATTGTATCAGTTTCAGGCATACAATATAATGATTTGATATTTGTATATATTGTGAAACT-ATCACCAGAATAAGTC TAGGTAACATCCA------CACAGAGTTACAGAGTATTTT-TCCTTGTGATGAGAACTTTTAAGA-CTTCTCTTTTAGTA ACTTTCAAATATACAGTGCAGAATTATTAAGTAGATTTC----ATCTATGGTTC---CTAAAGATATGAATATGGATTTC AGGATAATTTTAACCAGATCTCTACAA >Sus_scrofa TCTGTAATACTGATACTCTGTCTTGAG-GAGACAGAGGAAGAAATTCCAGT---ATCTTTG------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------GG-TTTT---GAACTTGATGCT AAATCTTT-------------------------------------AAGATTTTTTTAAAAATTCTAATAAAATTGACATA CAACATTATGTTAGTTTCAGATTTCCAACATAATGGTTCATTATTTGTGTATATTGTGAAA-TGATGACCAAAATAGGTC TAGTTAACATCCAGCATCCAACATAGTTATGTAA--TTTTTTTCTTATGATGAGAACTTTTAAGATCTACTCTTTTAGCA ATTTTCAGATATACAATACAGTCTTATCACCTGGAGTTA----ATCTATTGTTT---CTAAAGATTCGAGTATTGATTAT AGTATAATTTTAACCAGATTGCTAGAA >Bos_taurus TCTCTCTTATGGATACTCTATCTTTAG-AAGACAAAGATAGAAGTTCCAGT---GTCTTT-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------TT-TTCT---CAATTTGATGCT AAATCTTT-------------------------------------CAGG--TTTTTTTTAATTAAGATA------ATAGA TAACATTACATTAGTTTCAGGTGTACAACATAATGATTTGATATTTTTATATATTGTGAAA-TGATCACCAT-GTAGGTC TAGCTAACATCCATCATCAAACATAGTTACATAAT-TCTTTTTCTTGTGATGAGAATTTATAAGATCTGTTCATTTGGCA ACTTTTGAATAGGCAATATGGTATTATTAACTGGAGTTA----ATCTATTATTT---CTAAAGGTTTGAATATTGATTAT TGTATAATTTTAACCAGATGGATTAAA >Equus_caballus TCTCTCATATTGACACTCTGTCTTTAG-AAGACAGAAAAAGAA-TTGTAAT---ACCTTTT------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------TT-TTTT---TTACTTAATGCC AAATCTTT-------------------------------------AAGA--TTTTTTTAAATTGACATATAATTGACATA TAGCATTATATTGTTTTCAGATGTGCAACGTAATGATTCATTGTTTGTATATATTGCAAAA-TGATCACCACAATAAGTC T----AACGTCCATCATTAGATGTAGTTACAAAAT-TTTTTTTCTTGTGATGAGAAGTGTTAAGATCTATTCTTTTATCA ACTTTCAAATATACAATACAGTATTATTAAGTATAGTTA----ATCTATCATTT---CTGAAGATT-GAATGTTAATTAG AGGATAATTTTAACCAAATCTGTAAAA >Ceratotherium_simum TTTCTAATATTGATTCTCTGTCTTTAG-AAGACAGAGAAAGAA-TTGCAAT---GTCTT--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------TT-TTTT---TTAGTTAATGCC AAATCTTT-------------------------------------AGGA---TTTTTTTAATTGAGATGTAATTGACATA TAGCCTTATATTAGTTTCAGGTGTACAACATAATGATTCAATATTTGTATATATTGTGAAG-TGTTCACCATCGTAAGTC T----AACATCCATCATTATACATAGTCACAAAAT-TTTTTTTCTTGTGATGAGAACTATTAAGATCTATTCTTTTAGAA ACTTTCAAATATATAACACAGTATTATTAACTATACTTA----ATCTGTTGTTT---CTGAAGATTTGAATATTGATTAG AGGATAATTTTAAAGAGATCTATAAAA >Myotis_myotis TCTCAAATACTGGTACTCTGTCTTTAG-GGGACAGAGAAAGAAATTGCAAT---ATTTG--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------CT-CTTT--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------CCAAAGGTTGGAATAGTGACTGT AAGATCATTTGGACCAGATCTATGAAA >Pteropus_vampyrus TCTCTAATACTGATACTCTGTCTTTAG-GAGACAGAGAAAGAAATTGCAAC---ATCTG--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------TT-GTTT--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------CCAAAGATTTGAGTA-------- --------------------------- >Condylura_cristata TCTCTAATACTGAGAC--TGCCTTTCGTGGAACAGAGATAGAAATTGCATT---ATCAG--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------TT-GTTT--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------CCAGCGATTTGAAGGTTGATTAT AAAATGATTTTAA-AAGAGCCATCGAA >Uropsilus_gracilis TCTATAATATTGATAA--TGCTTTTAG-GGGACAGAGAAAAATATGGCACT---AT--A--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------TT-TTTT--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------CTTAAGATTTGAACATTGACTAT AGGATGATTTTAGAAAGATCCATAAAA >Homo_sapiens TCTCTGAT------ACTCTGTCTTTAG-GGGACAAAGAAAGAAATTACAAT---ATCTA--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------TT-GTTT--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------CCAAAGAGTTGAGTATTGGTTGT AGGATCATTTGAACCAGATCTGCAAAA Dog508_LINE >L1MA9_3END -------------------------------------------------------------------------------- ------ATAAGTTCTGGAGATCTAATGTACAGCATGGTGACTATAGTTAATAATACTGTATTGTATA-CTTGAAATTTGC TAAGAGAGTAGATCTTAAGTGTTCTCACCACACACAAAAAAATG----GTAACTATGTGAGGTGATGGATATGTTAATTA GCTTGATTGTGGTAATCATTTCACAATGTATACGTAT-ATCAAAACATCACGTTGTACACCTT----AAATATATACAAT TTTTATTTGTCAATTATACCTCAATAAAGC----TGGAAAAA-------------------------------------- -------------------------------------------------------------------------------- ----- >Canis_familiaris TATCTATTGAGTACCTACGAGGTGCTGGGGGAAATGCA-GTGACCAA------TACAGCC---AGAGTC------TGCCT TCG-------------GGGATGTACTGTACAGCACGGTGACTATAGTA---AATACTGCATTGCATA-TCTGAAAGTTGC GAAGAGAATAAATCATAAAAGTTCTCATCACAAAAA----AACATTCTGTAACTATGTACGGTGATGG--ATGTTAACTG GACTTATTGTGGTGATCATTTTGTAATATATATGAAT-ATCAAATCATTATGTTGTACGCCTGGAGCAAATGAATGTAA- TGTTGTATGTCAATTATACTTCAATAAAAA------AAAAAA----------AGAAGAAAGTTGAGGAAATTAAAAAAAG AAAAAC-------AAAAACTCTGCCTTGG---AA--TTTACATTCTAGTTGGAAGAGATAAAG-GTAGCAAATAAACATT ATCTA >Felis_catus TAT-TATTGAGTACCTACTAGGTGCTGGGGGAAATGCA-GTGAACAA------CACAGCC---AAAATC------TGCCT TCG-------------GGGATGTAATGTACAGCACGGTGACCATAGTT---AATGCTGTATTGCCTA-TTTGAAAGTTGC TAAGAGAATAAATCTTAAAAGTTCTCATCACAAGAA----GACATTCTGTAACTATGTATGGTGACGG--ATGTTAACTA GACTTACTGTGGTGATCATTTTGTAATATATACAAATAATCAACTCATTATGTTGTACACCTG----CAACTCATGTAA- TGTTGTATGTCAATTATACCTCAATAAAAA------AAAAAA------------AAGAAAGTTGAGGAAATTAAAAACAA AACAAACAAA---AAAACCTCTGCCTTGG---AA--TTTACATTCTAGCTGGAAGAGACAAGG-GTAGCAAATAAACACT ATCTA >Manis_pentadactyla TATTTATTGAGTACCTGCTAGGTGCCGGGAATAATGCA-GTGAACAG------TACAATC---AAAATATC----TGCCT TCT-------------GGGATGTAATGTACAGCATGGTGACTATAGTTAATAATACTGTATTACATA-TTTGAAAGTTGC TAAGAGAGTAAATATT------------CACAAGAAAAA-AACATTCTGTAAC--TGTATACTGACGG--ATGTTAACTA GACTTACTGTGGTGATCAATTTGTAATATATACAAAT-ACTGAATCATTCTGTTGTACACATG----AAATTATTATAA- TGTTGTATGTCAATTATACCTCAATAAAAAATTTTTTAAAAA-----------GAAGAAAATTGGGGAAAAAG------- -------------AAAATCTCTGTCTTGT---AA--TTTATATTCTAGTTGAAAGAGACAAAGTGTAGCAGACAAACACT ATGTA >Sus_scrofa TATTTATGGAGTACCTATGAGGTGCTGGGGAAAATGCA-GAGAA---------TATGGTC---AAAATCTC----TGCCT TCA-------------GGGATGTAATGTACAGCATG--GACTATGGTTAACAATACCGTGTTGCATA-TTTGGAAACTGC TAAGAGAGTAAATCTTAAAAGTTCTCATCACAAGAAGA--AAAGCTCTGTAACTATGTATGGTGACGG--ATGTTAACTA GATTGACT---GTGATCATTTTGTAATGTATACAAAT-ATTGAATCCTTATGTTGTATACCTG----AAACGAATATCA- TGTTGTATGTCAATTATACTTCAATAAAAA------TAAAAATAAAAAAAGAAGAAGAAAGTTGAGGAGATTAAAAA--- ---AAA-------AAAATCTCTGGCTTGG---AA--TTTACATTCTAGTTGGAAGAGACAAAATGTGGCAAAT--ACACC CTGTG >Bos_taurus TATTTATTGAGTACCTACTAGGTGCTGGGGAAAATGCA-GTGAACAA------TACAGTG---AGAATCTC----TGCCT TCA-------------GGGATGTAACGTACAGCATGGTGATTGTGGTTAATAATACTGTATTGCATATTTTGAAAGTTGC TAAGAGAGTAAATTTTAGAAGTTCTCATCACACGAAA---AAAGCTCTGTAACTATGTATGGCGATGG--ATGTTAACTA GATGTATTGTGGTGATCTCTTTGTAATGTATACAGAT-ACTGAATCATTATGTTGTACATCTG----AAACTAATATAA- TGTTGTTTGTTAATTATGCTTCAATAAAAA------TAAAAA---ATAAAAGAGAAGAAAGTTGAGGAGATTGAAAA--- -------------GAAATCTCTGGCTTGG---AA--TTTACATTGTAGTTGGAAGAGAGAAAGTGTAGATAATATACACT CCTCA >Equus_caballus TATTTACTGAGTACTTACCAGGTGGTGGGGAAAATGCA--CAAACAA------TACCATC---AAAATCTCCCTTTGCTT TCA-------------GGAAT--AGCCTGCAGCATGACAACTACAGTTAACAACACTGTATTGCACA-TTTGAAAGTTGC TAAGAGATTAAAGCTTCTAAGTTTTCATCAGAAGAAA---AAAATTCTGTAAC--TGTGTGGTGATGG--ATATTAACTA GACTTAGTGTGGTGGTCATTTTGTAATAGATAGAAAT-ATCAAATCATTATGTTATACACCTG----AAACTAATATCA- TGCCATATGCCAGTTACACTTCAATAAAAA-------AAAAA-----------GAAGAAAGTTGAGAT------------ -------------AAAATCTCTGCCTTGG---AA--TTTACATTCTAGTTGGAAGAGACAAAGTGTAGCAAATAAACAC- -TGTA >Ceratotherium_simum TATT-------TACCTAGCAGGTGCTGGGGAAAATACA-CTGAACGA------TACAATC---AAAAGCTCTTTTTGTTT TTG-------------GGGATGTAATGTGCAGCATGGCAACTATAGTT---AATACTGTATTGCATA-TTTGAAAGTTGC TAAGAGAGTAAAGCTTATAAGTTTTTGTGAGAAGAAGAATAAAATTCTGTAACTATGTGTAGTGACAG--ATGTTAACTA GAC--ATTGTGGTGATCATTTTGTAAC--ATACAAAT-ATCGAATCATTATATTGTATACCTG----AAACTAATATAA- ---TGTATGTCAATTATACTTCAATAAAAA------AGAAAA--------GAAGTAGAAAGTTGAGGAGATAA------- -------------AAAATCTCTGCCTTGG---AA--TTTACATTGTAGTATGAAGACACAAAGTGTAGCAAATAAACACT ATGTA >Myotis_myotis TATTTACTGAGTACCTACCAGGTGCTGGGGAAAATGCA-GTGAATAA------TACAATT-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------AAAATCTCTGCCTTGG---AA--TTTACATT-------ACATAGACAAAGGTTAGCAAATAAACACC ATATA >Rousettus_aegyptiacus TATTTATTGAATACATACTAGGTGCTGGGGAAAATGCA-GTGAACGT------TGCAGTC-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------AAAATCTCTGCCTTGG---AATTTTTTCATCATAGTTAGAAGAAACAAAGTGTAGCAAATGAACACT CTGTA >Scalopus_aquaticus TATTTATGAAGTATACCTACTAGGTGCTGGAGAACATGAATGAACAA------CACAATC-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------AAAATCTCTGCCTTGG---AA--TTTACATTCTAGTTGGAAAAGACAAAGTGTAG----TAAACACT GTGTA >Erinaceus_europaeus TATTTAGTATCTACTTACTAG----CAGAGAAAATGCA-GTGAACTGCATTTCTGTAGTT-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------AAAATCGCGACTTTAG---AA--TTTACACTCTAGCTGGAAGAGACAAAGTACAGCAAATAAATAGA ATGTA >Homo_sapiens TATTTATTGAGCAC--------------------TGTG-ATTAACAA------TATAATC-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------AAATTCCCTGCCTTGG---AA--TTTACATTCCAATTCAAAGAGACAAACTGTAAC-AATAAACACT ATGTC Dog511_LINE >L1MA9_3END -------------------------------------------------------------------------------- ----------------------------------AGTAGAATGGTGGTTGCCAGGGGCTGGGGG---------------- --GTGGGGGAAATGGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCT---GGAGATCT AATGTACAGCATGGTGACTATAG-TTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTT CTCACCACACACAAAAAAAT-----------------------GG----TAACTATGTGAGGTGATGGATATGTTAATTA GCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTA TTTGTCAATTATACCTCAATAAAG-CTGGAAAAA---------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------- >Canis_familiaris TTTCAATGCATTAATGGGATATATTTTTTATGACTGT----------------------------------------TTT AAAAATCCAT---AAGAAATCCACATTTTCT------------GAGATGGA----GGGTGAGGG---------------- --G-GG-------------------------------------------------------------------------- --------------------------AACACTGGTGTATAATACA--GGAAAGTTGCTAAGAA--TAAATCCAAAGAGTT CTCATCACAGGGAAAAAAAAGCCAAACTTT-------TTTT--TT----TGTCTATAGTAGGTTATGG------------ ---------------------------ATATA--T--GTCAAATGCTTTTGCTGTACACCTTAAACTCATACAG-TGCTA TATGTTAATTATATCTTAAT-GAA-CT---AAAAAA----AAGAAATCCATATTTTCC---CTTGCCATAAGTGCTTGGT AAAAG--------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------ATG AAATAGCTC-----TCATATTGAGGGAA >Felis_catus TTTCAATACATTAATAGGATGTACT-TCTATGACTAT----------------------------------------TTT AAAAATCCAT---AAGAAATTTACATTTTAT------------GAGGTTG-----GGGCTGGGG---------------- --T----GGAAATTGCGTGAAGGTTGTCAGGAGGTACAAACTTCCATTTAT--AAGATAAATAAGTGGT---AGTAATGT AATGTACAACATGATGCCTATGG-TTAACACTGCTGTATAATATA--TGAAAGTTGTTAACAGAGCAAATCCTAAGAGTT CTCATCACAAGGG-AGAAAAACCT-------------TTTT--TT----GGTCTAAATGAGATGATGG--ATGTTAACGA AGCTTTCTGTGGTGATCCTTTCACAATATATA--T--GTCAAATCATTATGCTGTACACCTTAAACTTATACAG-TGCTA TATTTCAATTATATCTCAAT-AAA-CT-----AAAA----AAGAAATCCACACTTTTA---CTTTCCATAAGTGACTAGT AAAAA---G----------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------GTA AATTAACC------TCATAATGAAGGAA >Manis_javanica TTTCAGTATATTAATAGGATATACT-TTTATGATGGA----------------------------------------TTA AAAAATACAT---AAGAAATCCACATTTTCT------------TATGTGAG----GGGAGAGGGAATTGAATGAAAGTGG TC-AAAAGGTAAAATTTTCAAAAAGGTCAAAAGGCACAA--CAAAAGGTACAAAAGGTAATTATACATTACTAGGGATGT AATGTATAACATGATGACTATAG-CTAATACTGCTATATGGTATATTTGAAAATTGTTAAGAGAGTGAATCCTAGGAGTT CTCAGCA--------------TCATTTTTT-------TCTT--TTACTGTATCTGTATGAGATAATGG--ATGTAAACTA GACATATTGTGGTGATCATTTCACTATATATA--T--GTCAAATCATTATGCTGTATATCTTAAACTTATATGG-TACTA -ATATCAATTTTATCTCAAT-AAAACTG-AAAAAGA----AAAAAATCCACATTTTTG---CTTTCCATATCTGTTTGGC AAAAGCTGAACAAATCACAATCATTATATAAATTAATCATGGGGATGAAAGTATAGCACAGAGAATATAGTCAATAATTC TGTAACATCATTCTATGTTGATAGTAACCACAATACTTTAGGTGAGCATCTAATAATGTATATGACTGTTGAATCACTAT GTTGTATACTTGAAAGCAATATGATATTGTATATCAACTATACTTCAATTAAAATTAATTAATTTAAGAAAAGCTGAATG AAATACCTC-----TCACGGTGAGGGGA >Sus_scrofa CTTCAATACA-TAATAGGATATACTTTTTAGAACTGT----------------------------------------TTT AAAAATCCAT---AAGAAATCCACATTTTCA------------GAGGTGG-----GAGTGAAGA---------------- --G-AGAGGGAATTGGATGAAAGGTGTCAAAGGGTACACA-TTACAATTTT--AAGATAAATAAGTGCT---AAGGATGT GATGTACAACATGATGACTATAG-TTAACACTGCCGTATGGTGTATTTGAAAATTGTTAAGAGAGGAGATCCTAAGAGTT CTCATGACAGGGATAAAAATATTTTTTTCTTTTTTTCTTTT--TT----TGTCTATGTGAGATGATGG--ATGTTAACTA AACTTATTATGGTGATCATTTTACAATATATA--TAAGTCAAATCATTATGCTGTATACCTTAAGCTTATACAG-TGCTG TATGTCAATTGTATCTCAGT-AAA-CTGAGGGAAAA----AATAAATCTATATTTTTG---TTTTTCCTATCTATCTGGT AAAAGCTGG----------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------ATA GAATACTTC-----TTGAAGTGAGGGAA >Bos_taurus CTTCAATGCATCA-TAGAATGTGCTTTATAAGACTGT----------------------------------------TTT AAAAATCCAT---AAGAAATCCACATTTTCA------------CAGGTGG-----AGGCTGGGA---------------- --G-AAAGGGAATTAGATGAAAGGGGTCAAAATGTTCACAATTTCAGTTAT--AAGATAAGTAAGTACT---AGGGATAT ACTGTGCAACATGAAGACTAAAA-TTAACACTGCTATATGGAGTATTTCAAAATTA-----AAAGTAAATCCTAAGAGTT CTTGTGACAAGAAAAAAAAATACTTTTTTTTCTTCTTTTGTGGTG----TGTCTATATGAAATGATGA--ATGTTAACCA GACGTTTTGTGGAGATCATTTTACAGTATATT--TGAGTCAAATCATTGTGCTGTACACCTTAAATTTACACAG-TGTTG TATGTCAATTATATCTCAAT-AAA-CTGAGGGAAAAC---TAGAAATCCACATTTTCA---TTTTCCACATCTTTCTGGT AAAAGCTGA----------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------ATG AAATACTGTACTGATTGTAGTGAGGGAG >Equus_caballus TCTTAATGCATTAGTAGGATGTACTAGTTGTGATTGT----------------------------------------TTT AAAAATCCAT---AAGAAATCCACATTTTCA------------GAGGTGG-----GGGTGAGAG---------------- --G-AGAGGGGATTGGATGAAGGTGATCAAAAGGTACAAACTTCCAGTTAC--AAGATAAATAGGTACT---AGGGGCGT AATCTACAAC---ATGGCTATAGTTTAACGCTACTGTATGGTATATTTGAAACTTGTTAAGAGAGTAAATTCTAAGCGTT TTCATAACAAGGA-AAAAATACTTTTT--CTTT----TTTT--TG----TATCTATATGAGATGATGA--ATGTTAACTA GACTTATTGCGGTAATCATTCCACAACATATA--T--GTCACATCATTATGCTGTACACCTTAAACTTATACAG-TGCTG TATGTGAATTATATCTCGATAAAA-CTGGAAAAAAA----AAGAAATTCACATTTTCA---CTTTCCTTATCTGTCT-GC AAAGGCTGA----------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------ATA AAATACCTC-----TCATAGTGAGGGAA >Ceratotherium_simum TTTCAGTGCATTAGTAGGATGTACTAGTTACAACTGT----------------------------------------TTT AAAAATGCAT---CAGAAATCCACATTTTCA------------GAGGTGG-----GGATAAGGG---------------- --G-AGAGGGAATTGGATGAAGGTGATCAAAAGGTACAAACTTCCAATTAT--AAGATAAATAACTACT---AGGGATGT AATTTACAAC---ATGACTACAG-TTAACACTGCTCTATGGTGTATTTGAAAGTTGTTAAGAAAGTAAATCCTAAGAGTT TTCATCACAAGGA-AAAAACGTTTTTTTCTTTT----TTTT--TG----TATCTATATGAGATGATGG--ATGTTAACTA GACTTATTGTGGTAATCATTTCACAATATATA--T--GTCA---CATTATGCTGTACACCTTAAACTTATACAG-TGCTG TATGTCAATTATATCTCAATAAAA-CTAGAAAAAAA----AAGAAATTCTCATTTCAG---CTTTCCATATTTGTCTGGT AAAAGCTGA----------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------ATA AAATACCTC-----TCATAGTGAGGGAA >Myotis_myotis TTTCAATGCACTAATTGGAT-----------GACTAT----------------------------------------TTT AAAAATCGAT---TAGAAATCCATATTTTCA------------GAGTTAGCAGATTGGTGGGAG---------------- --G-AAGGGAAATTAAGGGAAGGTGGTAGAAAGGTACAAACTTCCAGTTAT--AAGATAAATAAGTAGT---AAGGATGT AATCTACAAC---ATGACTATAG-TTAACGCTATTATATAGTACATTT-AAATTTGTTAAGACAGTAAATCCTAAGAGTT TTCATCACAAGAATAAAACAAACT-------------TTTT--TG----TATCTATATGAAATGATGG--CTATTAACTA GACTTATTGTGGTGAGAG-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------- >Rousettus_aegyptiacus TTTCAATGCAGTAATAGGAT--ACTATATATATATATATATATATATATATATATATTTACTTGTATATATTTTACTTTT ACGAATACAT---TAGAAATCCACATTTCCA------------GAGACAG-----GGAATAGGG---------------- ----AGGGGAAATTGGAAGAAGGTGGTCAAAAGGTACAAACTTCCCATCAC--AAGAGAAGCAAGTACT---AGGGATGC AATTTACAATATGATGACTATAG-TCAACACTGTTATATAGTATATTTGAAAGTGGTTAAGAGAGTAAATCTTAAGAGTT CTCATCACAAGGAAATAAAAACA--------------TATT--TT----ATTCTCTATGAGAAGATAA--ATGTTAATTA GATTTATTGTGATAAGACTTATTGGGGTTCATTAT--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------- >Condylura_cristata TTTCAATGTGTTAATAGACTGTACAATTTATGATAAT----------------------------------------TTT AAAAATTCAT---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------GAAAAATCTCCATTTTCA---TCTTCTGTGTATGTTTGGT AGAATTTGA----------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------ATG AAATATTC------TCATAGTGAGAGAA >Erinaceus_europaeus TTTAAACATATCAACATACAATATAATTTTATTATGT----------------------------------------TTT AAAGATCCAT---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------AAGAAATTCACA-TGCCA---CTAT------------GAG GACAGCTGA----------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------GTG AAATAACTC-----TCAGATTGAGTAAA >Homo_sapiens TTTCAATACTTTAATAGGATGTACTTTTTAGGACTGT----------------------------------------TTT AAAAATCCGT---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------AAGAAATCCACATTTTTA---CTTTCCATATTCGTCTGGT GAAAGTGAA----------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------ATG AATTTTTTA-----CCATAGTGAAAGGA Dog517_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------TTTTTCCAGCTTTATTGAG GTA------TAATTGACAAATAAAAATTGTATATATTTAAG-GTGTACAACGTGATGTTTTGATATACGTA--------T ACATTGTGAAATGATTACCACAA--------------------------------------TCAAGCTAATTAACATATC CATCACCTCACATAGTTACCATTTTTTTGTGTGTGGTGAGAACACTT-AAGATCTACTCTCTTAGCAAATTTCAAGTATA CAATACAGTAT--------------TATTAAC-TATAGTCACCATGCTGTACAT-TAGATCTCCAGAACTTATTCATCCT GCATAACTGAAACTTTGTACCCTTTGACCAACATCTCCCCATTTCCC---CCACCCCCCAGC-CCCTGGCAACCACCATT CTACTCTCTGCTTCTATGAGTTTGACTTTTTTAGATTCCACATATAAGTGAGATCATGCAGTATTTGTCTTTCTGTGCCT -------------------------------------------------------------------------------- >Canis_familiaris CTT-----TACATTTTA-TATATATTTCTAGTTTTTATTTTTTTATTATTATCTAGTTTTTTTTATTTCATTAATAAATC TCAATCAGAAAGATACTCTA---CAAATTTAATTTCT---TTTTATACTTATTTTTCAA--TGTTTCCAGCCTTCTTAAG ACA------TAGTTGATATAT-AACATTGTGTAAGTTTAGG--TGTATAACATGTTGACTTGATACAACTAT-------T AAATTGCAAAATGATAACCAGTA--------------------------------------TAGTATTAGCTACCACTGC CACCCCACCACATAGTTATCATTTCTTT-TTTGTGGTGAGAACATTT-AAGATCTACTCTCTAATCAACATTCAAGTATA CGATACAGTAT--------------TATCAGC-TATAATCACCATGT--TACAT-TAGATCCCCA-AACTTGTTAATCTT --ATAACTGGGAATCTAGACCCTATGAGCGAAGTCTTCCCCGTACCT----ACCTCCTCAAC-CCCTGGTATCTACCATT TTA----CTGTTTCTCTGAGTTTGTCCTTTTTAGATTTCACATACAACCGATTTCATGCACTATTT-------------- ---CAAATTT-----T---AAA--------TCACTTTAAATATATATTCGGTGACTATTATGATGTTTCAAAGTTGATGC >Felis_catus CTTATCTTTACATTTTA-TTTTTATTTCTAC---TTATAAATT-------------------------------TAAATC CCAATCGGAAAGTTACTCTA---CAAATTTAACTTCT---TTTTAAATTTATTTTTCAAGTTTTTGCCAGCTTTCTTGAG ACA------TAATTGACATGT-AACATTGTATAACTTTAGG--CATACAACATGTTGATTTGATACATGCA--------T AAACTGCTAAATGATAACCGTTA--------------------------------------TA-TATTAGCTACCACGTC CATCCCATCACATAGTAACCATTTCTTT-TTTGTGGTGAGAACATTT-AAGATTTACTCTCTAATCAACATTCAAGTATA GAGT--AGTATCACATACTAGTTAGTATTAGC-TGTGATCACCTCGC--TATAT-TAGATTCCCA-AACTTTTAAATCTT --ATAACTGGGAGTTCAGACCCTTTGAGCAATGTC-TCCCCTTACCT-----CCTTCCCAAC-CCCTGGTAACCACTATT TTA--ATCTGTTTCTCTGAGTCTGTCCTTTTTAGATTTCACATATACCTGATACCATACACTATTT-------------- ---CAAACTTCTCCTT---AAA--------TGACTTTAAGTATATACTTGTCAACTATTACAGTGTTTAAAAGTGGCTGC >Manis_pentadactyla TTTACGTACATACTTTGTTTTTTAATTTTAGTTATGAAAATTT---------------------------------AAAC CCAATCAGAAAGTTAT--TT---CAAATTTAACTTCT-----TAGAATTTACTTTTAAT-TTTTTCCCAGCTTTCCTGAG ATA----------TGACACAT-AACATTATCTAAGTTTAGGTATATACAATATGTTGATTTGACATATTTA--------T AAATTGCAAAATGATGACCACTA--------------------------------------TAGTGTTAGCTACCATTTC AATCCTATCACATAGTTACCATTTCTTT-TTTGTGGTAAGAACATTT-AAGATCCACTGCCTTAGAAATATTCAAATGTA TGATACAGTAT--------------TATTAGT-TAAAATCACCATGCTGTATACATCAAGTCCCA-AACATGTTAATCTT --ATAAA-GGGAATTTGTATACTTACAGCAACATA--CCCATTACCC---CCACCCCCTAAC-CCTTGGTAACCACCTTT CTA--CTCTATT--TCTGAGTTTGTCCTTTTTAGATTCCACATATAAGTGGTATCCTACAGTATTT-------------- ---CAAACTTCC---------------------CTTTAAATATATACTTTGTAAGTATTAGGGTGTTTACAAGTTGTGGC >Sus_scrofa TTTACCTTTACATTTTG-TTTTCGGTTTTATTTATTATAAATT-------------------------------TAAATC CCACTCAGAAAATTACTCTA---CCAGCTTAACTCTT-----------------TAAACATTTTTTTCAGCTGTTTTGAG ATG------TAGTTGACACAA-AACATTGCGTACGTTTACG--TGTACGGCATGTTGATTTCATACATTCA--------T AAACTGCAAAATGACCACCACCATAGTGGCATATATACAGTGGTCCAACACTACACCCCGATGA-ATTAGCTACC-CCTC CATCCCATCACATAGTTACCGCTTCCTT-TTTGCGGTGGGAAGATTT-AAGATCTACTCTCGTAGCAACATCCGAGTATC TTATACAATAG--------------TATTAGC---CATCTACCATGTTGTACAT-GCAACCCCCA-AACTTGTT-ATCTT --CTAACTGGGAGTTCACATCTTTTGAGCAATGTTTTCCCATTACCTCCACCCACTCCCCTC-TCCCAGGAACCACCATT CTA--TTCTGCTTCTCTGAGTCTGTCCTTTTTAGATTCTACATGTAAGTGATATCATACAGTATTT-------------- ---CAAACTTCTCTTC---AAA--------TGACCTTAAAGATACACTTGG--ACTATTATGGGGTTTAAG-TTTTTGGC >Tursiops_truncatus TTTACCTTTACATTTTA-TGTTTAGTTTTAGTTATTATAAATT-------------------------------TAAATC CCAATCAGAAAGTTACTCTA---CAAGCTTAACTTTT-----TTAAATTCATTTTTTAT-TTTTTTCCAGCTTTCTCGAG ATA------CAGTTGACACAT-AAAATTGTGTAAGTTTAGG--TGCACAACACTTTGATATGATACATTTA--------A AAACTGCAAAATGATTACCACGATACCAG--TACATATAGTGGTATAATACTACACCCCAGTAATAGTAGCTAGCACCTC TATCCCATTACGTACTTACCACTTCCTT-TCTGTGGTGAGAACATTTAAAGATCTACTCTTTTAGCAACATTCAAGTATA TGAC--AGTAT--------------TATTAGCTTATAATCACCATGTGGTACAT-TCAATCCCCG-AACTTGTTAATCTT --ATAACTGGGAATTTGTACCCTTTGAGCAATGTCTCCTCATTAACTCCGCCCCCTCCCAAC-ACCTGGTAACCAGCATT CTT--TTCTGTTTCTCTGAGTTTGTTCTTTTTAGATTCCATATATAAGTGATATCATACGGTATTT-------------- ---CAAACTTCCCTTT---AAA--------TGAGTTTAAATATATACTTGGTGACTATCAGGGTGTTTAAAAGTTGTTGC >Myotis_myotis TTTAC-TCTACA------TTTTTATTTTTAT---GTAAACATT-------------------------------TAAATC CTAGTCAGAAAGTTATTCTA---CAAACTTACTAATA-----------TTCTTTTAAATTATTTTTTCAGCTTTACGGAG ATATACCAGTAACTGACATTT-AACATTGTGCAAGTTTAAG-GTACACAACAGGTTGACGTAATATATTTAT-------A AAACTGCAAAATGATTACCACCA--------------------------------------TCATATTCACTGCCACCTC CATCCCCTCA--TAGTTGCCATTTC----TATGTGGTAAGAACCTTT-AAGATCTACTCTCT-AGCAACATTCAAGTACA TGATAAAGTAT--------------TAATAGC-TATAAACACCATGCTGTACAT--CAGAGCCCA-AACTTGTTAATCTT --ATAACTGGAAGT-CACACCCTTTAAGCAAAACCACCCCACTTCCC---CCACCGCCCCACCCGCTGGTAACCACTACT CCA----CTGTTGCTATGAGTTTGTTTTTTTCTGATTCCACATGTAAGTGTCATCAAACG-TATTT-------------- ---CAAACTTCTCTTT---AAACCTTTAAATGGCTTTAAATACATACTTGGTGACTATTAGGGGACTTAAAAGTTGTTGC >Rousettus_aegyptiacus TTTAC-TTTATATTTTG-TTTTTATTTTTAGTTATTATACATT-------------------------------TAAATC CTAATCAGTTATTT---CTA---CAAACTTACATTTT-----TTAAATTTTTATTTA----TTTTTCTAGCTTTATCAAA TTT------TAATTGACACAT-AACATTATGTAAATTTAAG-GTGCGCAATGTGTTGATGTGATACATTTATAAACTTAT AAACTGCAAAATGATTACCACCC-------------------------------------ATAGTATTAGCTACCACCTC CGTCTCATCAC--AGTTACCATTTCTTT-TTTATGCTGAGAACATTC-ACCATCTAA-CTCTTAGTAACATTTGAGTATA TGATACTGTAT--------------TAATAGT-TACAAACATTATGCTGTGCAT-TAGATCCCCA-AACTTGTTAATTGT --ATAACTGGGAGTTGGTACCTTTT-AGTAACATCTCCCCATTCCCCCCCCCCACCCCCCACACCCTGGTAACCACCACT CTA--CTTTGTTTCTCTGAATTTGTTCTTGTCAGATTCTACACATAAGTGATATCATACGATATTT-------------- ---TAAACTTCCCTTT---AAA--------TTACTTTAAAGATATTCTTAGTAACTATTAGTGTGTTTAAAAGTTGCTGC >Equus_caballus TTTACC------TTTTG-TTTTTATTTTTAGTTATTATAAATC-------------------------------TAAATC TCATTCAGAAAGTTACTCTA---C-CACTTACC-TTT------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AAA--------TGCCTTTAAATATATATTTGGCGAATAATAGGGTGTTTAAAAGTTGTTGC >Ceratotherium_simum TTTACCTTTACATTTTG-TTTTTATTTTTAG---CTATAAATT-------------------------------TAAATC CCAATCAGAAAGTTACCCTA---CAAACTTACC-TTT------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AAA--------GGACTTTAAATATATACTTGGTGAATAATAGAGTGTTTAAAACTTGTTGC >Uropsilus_gracilis TTCACTTTTACTTTT----------TTTTAGTTACTACAAACT-------------------------------TAAGTT CTAATTAAAAATT-----TA---CAAACTTTCCCCTA------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------CAT---------GACTTT----ATATACTTGGTGAACATGAGGGTATTTAACAGTTGTTAC >Sorex_araneus TTTATCTTTATGAGT----------------TTATTATAAATTC------------------------------TAAGCG CCAATTGAAAACTTACTCTA---CAA-CTTA-----T------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AAA--------TGATTTTAGATACATATGACGTAAACATTAGGGCATGTAAAAGTTGTTGC >Homo_sapiens TTTCCCTTACCATTTTG-TTTTGAATTTTAGTTACTATATATT-------------------------------TAAATT TCAATCAGGAAGTTACTCTA---CAAACTTACC-TTT------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------CAA--------TGTTTATAAATATAAATTTGGTGAATATGATGGTGTTTAAAAGTTGTTGC Dog520_LINE >L1MA9_3END -------------------------------------------------------------------------------- TTTTTCCAGCTTTATTGAGGTATAATTGACAAATA---------AAAATTGTATATATTTAAGGTGTACAACGTGATGTT TT-GATATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTACCATT- -TTTTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAAATTTCAAGTATACAATACAGTATTATTAACTATAG TCACCATGCTGTACATTAGA------------------------------------------------------------ --------------- >Canis_familiaris AGAGTTATACAGTGCA--CC-ACCTGTACAACTGGGTGTGGCAGTCCTGGGA---AGG-AGCAGTTTTT---TTTAAATT AAAGAAAAAATT--TTGAGATACAATTAACAT------------AACACTATATTAATTTCAGATACACAACATAATGAT TT-----CATATATATGTTGCAAAATGGTTCCCACAATAAATC----TAAC--ATCCATTATCACACATAGCTATAGTTT -CTTTTTCTTGTGATGAGAATTTTTAAGATCTGCTCACTTACTAACTTGCAGATATGCAATACAGTATTATTAACTATAG TTAACGGG---------------AGTTACTTTT---AAGTCTCCTTCGGA-AGAGAAAGTTGGCATTAACACAA---TGT CTCCTCCTTGTT--C >Felis_catus TCAGTCATACAGTGCA--AA-ACCTGTGCAACTATGTGTGGCAATCCTGGCA---A-------TTTCTT---TAAAAGTA AAGAAAAAAATTTGTTGAGATATTATTGAC--------------------GTATTAATTTCAGGTGTACAACGT---GAT TC-CATATATGTATGTACTGCAAAATGGTCCCTGTGATAAATT---CCAA---GTCCATCAACACACATAATT------- -TTTTTTCTTGTGATGAGAACTTTTCAGATCTACTCACTTAACAACTTTCAAATCTGCAACACAGCATTATTAACTGTAG TTAATAGG---------------AGCTGCTTTT---AAATCTCCTTTAGA-ATAGAAAGTTAGCACTAATCCAATGGTGT CTCTTTCTTGTT--C >Manis_pentadactyla AGAGTTACACAGTGTATTTCTGCCTGCACAACTGTATGTAGCAGTCCTGAAA---AGC----AGTTTTT---TTAAACT- --AAAAAAATTTTTTTGAGTTAGA-----------------------------------TCAGATATACAATGTAATGAT TCAAATATATGTATAAACTACAAAATGATCCCCACAGTAAGTC-----AAC--ATCCATCACCTCACACAGTTACGAAT- -TTTTTTCTTGTGAAAAAAACTTTTAAGATCTACTCATTTAGCAATTTTCAAATATG-AATACAGTATTATTAAT--GAG TTAACAGG---------------AGTAGTTTCT---AAATCTCCTCTGGA-AGAGAAAGTTGGCATTAATCCAATGTTGC CTCCTCTTTGTTCTC >Equus_caballus ACAGTTGTACAGTACA--TC-ACCTGCACAACCATATGTGGCAGTTCTGGGA---AGG-AGTAGTTTTT---TAAAAATT AAAAAAATATTTTATTGAGATATGATTGACATAT----------AACATTATGCTAGTTTCAGATGTACAACATAATGAT TT-GAGGTTTGGGTATATTGCAAAATGATCCCCACAATAAGTCTAGTTAAC--ATCCATCACCACGCATAGTTACAAA-- -TTTTTTCTTGTGATGAAAACGTTTAAGATCTACTCTCTTAGCAAATTTCTAATATATAATACAGTATTACTAACTAGAA TTAAT------------------AGTAGTTTTT---AAATCTCCTTC-GA-AGAGAAAGTTGG-ATTAATACAATGTTGT CTCCTCTTTGTTCCC >Ceratotherium_simum ATAGTTATACAGTACA--CC-ACCTGCACAACTGTATGTGGCAGTCCTGGGG---AAGGACTAGTTTTT---TAAAAATT AAAAAAAAA-TTTATTGAGATAGAATTGACATAT----------AACATTACATTAGTTTCAGATGCACAAGATAATGAG TT-GATATTTGTATATGTTACAAAATGATCCCCACAATAAGTC----TAAT--GTCCATCACCACATATAGTTACAAATT TTTCTTTCTTGTGACAAGAACTTTTAAGATCTACTTTCTTAGCAAATTTCAAATATGCAATACAGTATTATTAACTAGAG TTAATAGG---------------AGTAGTGTTT---AAATCTCCTTTGGA-AGAGAAAGTTGG-ATTAATCCAATGTTGT CTCCTCTTTGTTCCC >Myotis_myotis CCAGTTCTGCAGGGCA--CC-CCCTGCACGACTGTATGGGGCACTCATGGAA---GGA-AGTAGTTAAA----------- ------AAAATTTTTTTAAGTTTAAATGAGATGTAACGATGCCTAACATTGTAATAGTTTCAGGTATACAGCATAATGAT TC-AATATTTATATGTATTGCAAAATGATCCTCATAGTAAGTGTAGTTAAC--ATCCATCACTGCACATAGTTACAAATT CTTTGTTCTTGTGACGAGAACTTCTAAGATCAACTCTCTCAGCAACTTTCAAATATGCAATAGAGTATTATTAACTATAG TTAACAAG---------------GGTAGGTCTT---AAATCT-CTTTGGA-AAAGAAGGTTGGCATTAATCCGATTTTGT CTCCTCCCCCTT-CC >Rousettus_aegyptiacus AGAGTGATACAGTGTG--CC-ACCTGCACAACTGTATGCGGCCCACCTGGAA---AGA-AGTAGCTTAA----------- --------ATTTTTTTAAGATATAATTGACATCT----------AACATTGCCTTAGTTTCAGGTGTACAACATAACGAT TC-AATATTTGTTTATGTTGTTAAATGATCCTCAAAATAAGTCTAGCTAAG--AAAGATTACCACATGTAGATAAAAATG TTTTTTTTTTGGTGTGTGA------CAGACAAGAACTTTTAGCAACTTTCAAATATACAATAGAGTATTATTCACTGTCA TTAACAG----------------GGTAGTTCTT---AAATCTCCTTTGGA-AGAGAGAGTTGTCATTAATCCAACATCAT TTCCTCTTTATT-CC >Sus_scrofa AGAGTTGTGCAGTGCA---C-ACCTGCACAACTGTATGTGGCAGTACTAGAA---AG----TAGTGTTT----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------AAATCTTCTTTGGA-GGAAAAAGTTGGCATTAATCCATTGTTGT CTCCTTTCCCTTTCC >Tursiops_truncatus AGGG---CACAGTGCA---C-ACCTGTACAACTGTATGCAGCAGTCCTAGAA---AGA-AGAAGTGTTT----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------AAATCTTCTTTGGA-AGAGAAAGTTGGCATTAATCCACTGTTGT CTCCTTTCCATTTCC >Erinaceus_europaeus AGAGTTATGAAATGCA--AC-ACCTACATAACCATATGTGGCAATCCCAGGA---AGG-AGAAGCTTCT----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------AGAGCTCTTTGGGA-AGAGAAAATTGGCATTAACTTGAAAGTAT CTCCTCTTTGCTTCC >Sorex_araneus AGAGCTCCACGGGGGGTCTA-GCCTGCACACCCAGGTGTGGCCCTGCTGGAA---ATG-CCTGGTCTTT----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------AGGTCTTCTTTGGCTGGGGAAAGTTGGCATTGAT-CGATGGTCT CTTTCCTCTGTGCCC >Homo_sapiens AGATCTACACAGTGTA--CC-GCCTATACAGCTGTCTGTGGTAGTCCTGGGA---GGA-GGTAGTTTTA----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------AAATCTCCATTGGA-ATTGAAAGTTGGCATTAATCTCATGTTGC CTCCTCTTACTTCCC Dog522_LINE >L1MA9_3END -------------------------------------------------------------------------------- -----------------------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAA-ATTGTATATATTTAAGGT GTACAACGTGATG--------------------------------------------------------TTTTGAT---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------ATACGTATACATTGTGAAATGATTACCACA-----ATCAAGCTAATTAACATATCCATCACCTCA--- -----------------------------------CATAGTTACCA---TTTTTTTGTGTGTGGTGAGAACACTTAAGAT CTACTCTCTTAGCAAATTTCAAGTATACAATACAGTA--------TTATTAACTATAGTCACCATGCT-GTACATTAGAT CTCCAGAACTTATTCATCCTGCATAACTGAAACTTTGTA-CCCTTTGACCAACATCTCCCCATTT--------------- -------CCCCCACC------CCCCA------GCCCCTGGCAACCACCATTCTACTCTCTGCTT---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------CTATGAGTTTGACT----------- --------TTTTTAGATTCCACATATAAGTGAGATCATGCAGT-ATTTGTCTTTCTGTGCCTGGCTTATTTCACTTAGCA TAATGTCCTCCAGGTTCATCCATGTTGTCACAAA-TGGCAGGA----------------TTTCCTTCTTTTTTAAGGCTG AATAATATT-CCATTGTGTATATATACCACATTTT--------------------------------------------- ------------------------ >Canis_familiaris GAAATTTTGATTGCATTTAAA------------------------------------ACATATACTTCT---TTTTTTT- --GGCTTTGCTTTTAA---AAGAAATTT--------ATTGAAGTATAATTGAC-TACAATATTATGTT-------TAGGT AAACAACATAATG--------------------------------------------------------ATTCAAT---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------ATTTGCATATATTGCAAAATAATCACAATAAGTCTAGAAGTCTAGTTAACATAT--ATCACTAGACCT GCCCCCCTACCAAAGACAGTCACGATA--------CATAGTTACAGAA--TTTTTTTCTTGTGATGAGAACTTTTAAGAT GTACTTTCATAGTAACATAGTAATTTAGAGTTTTGTGGGTTTTTTTTTTTTCCTGTAATT--CAAGCTAGTTAACAATA- ----GTGTATTATTAGTTTC--AGGGTGAGGATAATTTAGAGTTTTGCCTTAAATCTGCCCTCCA--------------- ---------TCTACC------CTCCATCTCTCATCTCTGGCAACCACCAGTCTGTTCTCTGTATCTATAAGGTTGGGTTT TTTTTTTTTTTTTTTTTTTTTTTTTTTTAAGGTTTTATTTATTTATGATAGTCACAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGGCAGAGACACAGGCAGAGGGAGAAGCAGGCTCCATGCACCGGGAGCCCGACGTGGGATTCGATCCTGGGTCTCCA GGATCACGCCCTGGGCCAAAGGCAGGCGCTAAACCGCTGCGCCACCCAGGGATCCCTATAAGGTTGGTTTTTGTTCTTGT TGTTGTTGTTTTTAGATTACACATATAGGTGAGATCATACAGT-ATTTGTCTTTC----TCTGACCTATTTCTTTTAGTA CAATGTCCTCAAGATCCATCCATGTTGCTGCAAAATGGCAAGATCTCTCTTTTGTTGTCTTTTTTTTTTTTAAACGGCTG AATAATATGCCCATTGTATAT-----------------GCTTTGT-TTTTT---CATAGCATCAACCTGATCCTGCAATT GGAGTCCACCTTATGGATAGATAC >Felis_catus GAAATTTTTGTTGCATTTAAA-ACATTTTCTTAAAATGA-------TGAGATT--AGGCATATACTTCT---TTCTTC-- --TGCTTTGCTTTAAA---AAAATT-----------ATTGCAGTATAATTGACATAC---ATTATGTT--AGTTTCAGGT GTACGATATAATG--------------------------------------------------------ATTTAAT---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------ATTTGTATATATTG-----TAATCACTACA-----ATGAGTCTGGTTAACGTAT--GTCACAATACCA AAACAAAAAACAAAAAAAACAAAAAAACATATCACCATACATACAGAATTTTTTTTCCTTGTGATAAGAACTTGTAAGAT TTACTTTCTTAGCAACTTTTAAATATGCAATACAGTA--------TTATTAACGATAGTCACCATGCT-GTACATTACAT CT-CATGTCTTACTAAATTT--ATAACTGCAG-TTTGTC--CTTTTGGCTCCCTTCACCCATTTG--------------- -GTCTTACCCCCACC------TCTCA---------TCTGGCAACCGCCAATCTGTTCTCTGTAT---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------CTATAAGGTTGGTTTTTGTTCTAGT CGT---TGTTTTTAGATTACATGTATAAGTGAGATCATATGGT-ATTTGTCTTTC----TCTGACATATTTCATTTAGTA TAATGCCCTTAAGATCCATCCATGTTGCCATAAA-TGGCGAGA-----------------TTTCATTTTTTTTATGGCTT AATAATATG-CCATTGTATAT-----------------GCTTTGC-TTTTT---CATAGCATCAGCCTGATCCTGCAATT GGAGTCCACCTTATGGATAGATAC >Manis_javanica GACATTCTGATTGCATTTAAA-ACACTTTCTTTTAATGA-------TGCTATT--AGACATACACTATT----TTTTTT- ----CTTTGCTTAAAA-------------CATTTATTTTGAGGTATAATTAACATACAACATT-------AGTTTCAGGT GTACAACATAATG--------------------------------------------------------AATTGGT---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------ATTTGTATATATTGTGAA-TGATCCCCACA-----ATAAGCCCAATGGACACTG--GTCATCATA--- -----------------------------------TATGGTTAGAGA--TTTTTTTTCTTATGATGAGAACTTTTAAGAG CGAATCTCTTAGCAACTTCCAAATATACAATACAGTA--------TTGTTAACTATAGTCACCATGCT-GTACATTACAT CCTTGTGACTTACGCATTTT--ATAAATAGAAGTTTTTAATCTTTTAATTCCCTTTATCCATTTGACTCACTGTCAAAAC TGCCCCCTCCCTACAGCATC-CTCCACCCCCAATCTCTCGCAATTACCAGTCTGTTTTCTATTA---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------CTATGAG------------------ --------TTTTGTAGTTTCATGTATAAGTAAGATCATATGCTTATTTATCTTTG----TCTGACTTA-----CTTAGCA TAATGCCTTTAAGGTCTATCTATGTTGTTGCAAATTGGTGAGA----------------TTTTATTATTTTTAATGACTG AATCATATA-CCATTGTGTAT-----------------GCTTTGC--TTTT---CATAGCACCAACCGGATCCTGCAATT GGAGTCCACCTTATGGATAGATAT >Equus_caballus GGAATTTTGATTACATTTAAAGACATTTTGTTATAATGA-------TGCTTTT--AGATACATACTTTT---TTTGTTT- --TGCTTTTTTATTTT-------------------TATTGAGGTGTAATTGGCATACAGTATTATATT--AGTTTTAGGT GTACAAC--AACG--------------------------------------------------------ATTCGAT---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------GTTTGTGTATATTATGAAATGATTACCACA-----GTAATTCTAATTAACATCC--ATCACCATA--- -----------------------------------CGTAGTTATAGAA--TTTTTTTCTTATGATGAGAAATTTTAAGAT CTACTCTCTTAGCAACTTTCAAATATGCAATACAGTA--------TTATTAACTATAGTCATCATGCT-GTACATTACAT CCCCATGACTTATTTATTTT--ATAACTGGAAATTTGTA--CCTTTGACCTCCTTCATCCATTTG--------------- ---------CCCACC------CCCCACTTCCTGCCTCTGGCAACCACCAATCTGTTCTCTGTAT---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------CTATGAGCTTTTTT----------- --------TTTTAAGATTCTATGTATA-GTGAGATCATACAGT-ATTTGTCTTTCTCTGTCTGATTTATTTCACTTAGCA TAACGTCCTCAAAGTCCATCCATGTTGTTGCAAA-TGGCAAGA-------------------TGTTCTTTTTTATGGCTG AATAATATG-CCATTGTATAT-----------------GCTTTGC-CTTTT---CATAGCATCAGCCTGATCCTGCAATT GGAGTCCACCTTATGGATAGATAC >Ceratotherium_simum GAAATTTTGATTACATTTAAA-ATATTTTGTTATAGTGA-------TGCTATT--AGACATATACTTAT---TTTTTTT- --TGCCCTGCTTTTTC--------------ATTTTTATTGAGGCATAATTGACATACAATATTATGTT--AGTTTGAGGT GTACAACATAATG--------------------------------------------------------ATTCGAT---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------ATTTGTGTATATTGTGAAATGATCACCACA-----ATAAGTCTAGTTAACATCT--GTCACTGTA--- -----------------------------------CCTAGTTACAGAAATTTCTTTTCTTGTGAAGAGAACTTTTAAGAT CTACTCTCTTAGCAACTTTCAAATATGCAATACAG-----------------CTATAGTCACCATGCT-ATATATTATA- CCCCATGACTTATTTATTTT--ATAACTGGAAATTTGTA--CCTTTGACTTCCTTCATCCATTTG--------------- ---------CCCACT------CCCCA-------CCTCTGGCAACCACCAATCTGTTCTCTGTAT---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------CTATGAACTTTT------------- --------TTTTTAGATTCCATGTGTAAGTGAGATCATACAGC-ATTTGTCTTTC----TCTGACTTATTTCACTTAGCG TAATGTCCTCAAGGTCCATCCGTGTTATTGCAAA-TAGCAAGG----------------TATTGTTCTTTTTTATGGCTG AATAATATG-CCATTGTATAT-----------------GCTTTGT-CTTTT---CATAGCATCAACCTGATCCTGCAATT GGAGTCCACCTTATGGATAGATAC >Myotis_myotis NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN- --NNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGATAG TCGATGGTTGACCAGCCGCTATGATGTGCACTGACCACCAGGGAGCAGATGCTCCTACCAGTAGGTTAGCTTGCTTCTGG GGTCTGGCCAATTGGGACTGAGTGAGACAGGCTGGACATGCCCTGGAGCCCTCCCTCGGTCTCTCCCTGGCTGGCCAACC TCCCGCGTCCCTCCCCGGTCCCGATCGTGCACCAGTGGGGTCCCTCAGCCTGGCCTGTGTTTTCTCGCAATCTGGGACCC ATTGGGGGATGTCAGAGAGCTGGTTTCGGCCTGATCCTGCAGACCAGGCCAAAGGACTGCACTGGTGCCCGAATTCGTGC ACCGGGCTTCTAGTTTGTATATATTGTGAAATGATCACCACA-----ATAAGTGTAAATAATATCT--GTCACCATA--- -----------------------------------CAGAGTTATATAA-TCTTTTTTCATGTAATGGGAACTTTTAAGAT ---CTCTTTTAGCAATGTTCAAATATGCAATACAGAA--------TTATTAATGGAAGTTGCTGTGCT-ATAAATTACAC ACCCATGATTTATTTATTTT--ATGATTGGAGGTTTGTA-CCTTTTGACTTCCTTCAGCTGTTTG--------------- --------GCCCACCACATATCTCCA-----TGTCTTTGGCAGCCACCAATCTGTTCTCTGTAT---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------CTATGGGCTTGTTT----------- --------TATTTTTATTCCATAT-------------------------------------------------------- ---------------------------------------------------------TATTTTATTATTTTTCATGGCTG AATAATATG-CTATTGTATAT-----------------GTTTTGGTTTTTT---TGTAGCATCAACCAGATCCTGCAATT GGAGTTCACCTTATGGATAGATAC >Rhinolophus_ferrumequinum GAAATTTTGATTACATTTAAA-ACATTTG-TTACAATGA-------TGCTATT------------------------TT- --TGCTTTGCTTTTTA---AAAAAAATA-------TATTGAGATATAATTGACATACAATATTATATT--GCTTTCAGGT ATATAACATAACG--------------------------------------------------------ATTTGAT---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------ATTTGTATATGTTGTGAAATGATCATCACA-----GTAAGTCTAGCTAATATCT--GTCACCATA--- ---------------------------------------GTTACAGAATTTTGTTTTTTTGTGATGAAAACTT--AAGAT CTACTCTTTTAGCAACTTTCAAATATGCAGTGCAGTA--------TTATTAACTGTTGTTGTTATGCT-GTACACTATAT CCCTGGGACTTATTTATTTT--ATAACTGGAAGTTTGTA-TCTTTTGACTCCCTTCATCCATTTG--------------- -------TCCCCACC------CCTAC-----TACCTCTGTCAATCACCAATATGTTCTCTGCAT---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------CTACAACCTTGGTTTTGGTTTTTAT TTTTTCTGTTTTTTGAGTCCACATATAAATGAGATCATACAGT-ATTTTTCTTTCTCTGTCTGACTTATTTCACTTAGCA TAATGCCCACAATGTCCATCTATGTTGTTTCAAA-TGGCAAGA----------------TTTTGTTCTTTTTTAT----- --------------------------------------ACTTTGC-TTTTT---CATAGCATCAACCTGATCCTGCAATT GGAGTTCACCTTATGGATAGATAC >Sus_scrofa GAAATTTTGATTACATTTTAA-ACATTTTGTTATAATGATCCT---GTCTATT--AGAGATGTAC-------TTTTTTT- --TCCTTTGC-TTTTT---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------CATAGCATCAACCTGATCCTGCAATT GGAGTCCATCTTATGGATAGATAC >Bos_taurus GAAATTTTGATTATATTTTAA-ATATTTTGTTTTAATGATCATATGTCTTATT--AGACATGTAC-------TTTTTTT- --C-TTTTGC-TTTTT---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------CATAGCATCAACCTGATCCTGCAGTT GGAGTCCATCTTATGGATAGATAC >Condylura_cristata GAAACTTTGATTACAGTCTAA-ATATTTTGTTATAGTGG-------TGTTGTTTTAGACAGAAAA-----------CAT- --TTTTTT---TTCCC---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------CATAGCATCAACCGGATCCTGCAATT GGAGTCCACCTTATGGATAGATAC >Solenodon_paradoxus GAAACTTTGATTGCATTTTAA-ACATTTTGTTACAATGT------ATGT-GTA-TATATGTGTGTGTTTATTTATTTAT- --TTACTTTATTTTTT---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------GATAGCATCAACCTGATCCTGCAATT GGAGTCCACCTCATGGATAGATAT >Homo_sapiens GAAATTTTGGTTACATTTAAA-ACATTTTGTTATAATGA-------TACTGTT--AGAAATAC--------------TT- --TTTTTCCCCCTTTC---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------CATAGCATCAACCTGATCCTGCAATT GGAGTCCATCTTATGGATAGATAC Dog524_LINE >L1MA9_3END -------------------------------------------------------------------------------- ---------------GACGGATTTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGT ACAACGTGATGTTTTGATATACGTATACAT-------------------------------------------------- -----------------------------------------------------------------TGTGAAATGATTACC ACAATCAAGCTAATTAACATATCCATCACCT--------------------------------------CACATAGTTAC CATTT---TTTTGT------------------------------------------------------------------ -------------------------------------------------------------------------------- ---------------------------------GTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAAATTTCAAGTA TACAATACAG-TATTATTAACTATAGTCACCATGCTGTACATTAGATCTCCAGAACTT---------------------- ------------------------------------------------------- >Canis_familiaris CAAACTAATTCAG---CAACAAATACTTGTT-----------------ATAATACTCAGGT---A---TTTTACTTTTTT AAACATTTAAAA-----------------------ATTAAGAGGTAATCAACATAT-AAC-----ATTCGTTTCAGGTGT ATAACATACTGGCTTTTTTTTTTTATATAT-------------------------------------------------- ---------------------------------------------------------------ATTGTGAAATAATCACA ACAGTAAGTCCAGTTAAT--ATCCATCACCACACACACACACACACACACACACACAAATATTCATCACCACACAGTTAC AAATTTGTTTTTTCTTGTGATGAGAACTTTGTTTTTGACAGAGTGTGTGAGTGAGTGGGGGCTGGGGAGGTGGATGGAAG GGAGAGAATCTTAAGCAGGCTCCACGTGGGGCTCCATCTCACACCCCTGAGATCATGACCCAAGCCAAAATCAAGAGTCA GATGCCTAACCGACTGAGCTATCTAGGCTCCCATTGTGATGAGAACTTTTAAGATCTACTCCCTTAGCAATGTTCAAACA CACAATACAG-TATTGTTAACTATAGTT---AGGC--------------------------ATTTTTAATTGATAATGTC ACA---TATAAACTGGTAATTTTTAGTTGAATAGGCAGTTTACTAAATAAAA-TC >Felis_catus CAAACTAATTCAG---CAACAAATACTTGTTTGAGTTTATACACATACAA-ATACTTAGGC---A---TTTTA-TTTTTT AAACATTTAAAA-----------------------ATTAAGATATAATCAACTTAT-AAC-----ATTAGTTTCAGGTAT ATAACATAGTGGTTTGATATTTGTATATAT-------------------------------------------------- -----------------------------------------------------------------TGTGAAATGATTAC- --AACAAGTTTAGTTAAT--ATCTGTCAC----------------------------------------CACACAGTTAC AAATTTAGTTTTTC------------------------------------------------------------------ -------------------------------------------------------------------------------- ---------------------------------TTGTGATGAGAAGTTTTAGGATCTACTCTCTTCACAACGTTCAAACA TACAGTACAGTTATTATTAATTACAATC---AGGC---------------------------ATTTAAATTAATAATGTT ACA---TATAAACTGGTACTTTTTAGTTGAGCAGGCAATTTACCAAATAAAA-TC >Manis_pentadactyla CTAATTAATTGGG---CAACAAATACTTGTTTGG----GCATACATACAATATACTCACGC---A---TTTTAGTTTTTA AATTTTTTTAAA-----------------------ATTGAGATATAACTGACATAT---------ATTAGTTTCGGGTGT ATAA--TAGTGATTAGACATTTGTATATAT-------------------------------------------------- -----------------------------------------------------------------TGTG-ATTGATCCCC ACAATAAGATTAGTTAAT--ATCC-------------------------------------------------------T AAATTTGTTTCTTC------------------------------------------------------------------ -------------------------------------------------------------------------------- ---------------------------------CTGTGATGAGAACTTTTAAGATTGACTTTCTTGGNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---------------------------NNNNNNNNNNNNNNNNNN NNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Sus_scrofa CAAACT-------------CAAAAACTTGTTTTGCCTTATGCACGT--ATTATATTCAGGC---CTTTTTTTTTTTTTTT TACTTTTTAAAA-----------------------ATTGAGATATGACTGACATAT-AACACT--GTTTGTTTTAGGTGT ACAACATAGTGACTCAATATTTGTATGTAT-------------------------------------------------- -------------------------------------------------------------ATACTGAGAAATGAGCACC AAAATAAGTCCAGTTAAC--ATCCATCACCA--------------------------------------CATATCGTTAC AAATTTATTTTTTC-----------------TGCAACACAGGATCTGAGCCATGTCTGTGACCCATACCACAGCTCACGG CAATGCCGGATCCTGAACCTACACAGCGAGGCCAGGGATCAAACACGCAACCTCATGGTTATTAGTTAGATTCGTTTCTG CTGCGCCACAATGGGAACTCCTATTTTTTC---TTATTTTGAAGACTTTTAAAATCTACTCTCTTAGCAACTTACAAATA TAAAATACAG-TATTATTAACTATAGTCACTAGGC--------------------------GTTTTAAATT----AAGTC ACA---TATGAACTGGTAGTTTTCAGGTGAGTATACAGTTTACTAAATAAAA-TC >Tursiops_truncatus CAAACGAATTCAG---CAACAAAAATTTGTTTTGCTTTATGTATACATAACACACT-AAGA--------TTTTTTTTTTT TACTTTTTAAAA-----------------------ATTGAGATATAATTGACACAT-AACATTACATTTGTTTCAGGTCT ACAACACAGTGA--CAATATTT---------------------------------------------------------- -----------------------------------------------------------------TGTGAAACGATCACC CAAGTAAGTCCAGTTAAC--ATCCTTCACCA--------------------------------------CACATAATTAC AAATGTACTTTTTC------------------------------------------------------------------ -------------------------------------------------------------------------------- ---------------------------------TTACGACGAGTAGTTTTAAAATCTACTCTCTTAGTAACTTTCAAATA TAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------------------------NNNNNNNNNNNNNNNNNNN NNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Equus_caballus CAAACTAATTCAG---CAACAAATATGTGTTTGGCTTTATGTGCATATAACAGATT------------TTTTA------A AAATTATTTTTA-----------------------ATTGAGATATAATTGACATAT-AACATTATATTAGTTCCAGGTAC ACAACATAGTGAGTTGATATTTGAATATAT-------------------------------------------------- -----------------------------------------------------------------TGTGAAATGATCGCC ACAATAAGTCTAGTTAAT--GTCCATCAC----------------------------------------CACAGAGTTAC AAATTTATTTTTTC------------------------------------------------------------------ -------------------------------------------------------------------------------- ---------------------------------TCATGATGAGAACTTTTAAGATCTACTCTCTTAGCAACTTTCAAATG TACAATACAG-TATTGTTAACTATAATC---AGGC--------------------------GTTTTAAATTGATAATGTC ACA---TATGAACTGACAATTTTCAGTTGAGTATGTGGTTTACTAAACAAAA-TC >Ceratotherium_simum CAAACTAATTCAG---CAATAAATACTTGCTTGGCTTTATGTACATACAACATA----GGT---GTTATTTTA------- -AATTGTTTTTA-----------------------ATTGAGATATAATTAACATAT-AACATTATATTAGTTCCAGGTGC ATAACATAGTGATTCAATATTTGTATATAT-------------------------------------------------- -----------------------------------------------------------------TGTGAAATGATCGCC ACAATAAGTCTAGTTAAC--ACCCATCACCA--------------------------------------CATATAGTTAC AAATTTA--TTTTC------------------------------------------------------------------ -------------------------------------------------------------------------------- ---------------------------------TTATGAAAAGAACTTTTAAGACCTACTCTCTTAGCAACTTGCAAATG TACGATACAG-TATTATTAACTACAGTC---AGGT--------------------------GTTTTAAATCGATAATGTT ACA---TATGACAGGACAATTTTCAGTTGAGTATGTAGTTCACTAAATAAAG-TC >Myotis_myotis CTAACTAATTGAA---CAACAAATACTTATTTGGGTTTATGCACAT-----ATACTCGGGC---A----TTTATTTTTTA AAAAATTGT--A-----------------------ATTGAGATGTAATTGACATAT--------TATTAGTTTCAGATGT ACAACACAGTGATTTGATATTTGCATATACAGGGCTGGGCAAAAGTAGGCTTACAGTTGTTCATATGGGAAATAATATAA TAATAAATAACAATGCAAAAAGAAACTCACATACTCACAACTGTAAACCTACTTTTACCCATCCCTGTGAAATGGTCACC AGAATAAGTCTAGCTAAC--ATCTGTCATCA--------------------------------------CATATAGTTAC AAATTTAA-TTTTC------------------------------------------------------------------ -------------------------------------------------------------------------------- ---------------------------------TTGTGATGAGAACTTTTAGAACCTATTCTCTTAGCAACTTTCAAATA TACAACACAT-TATAATTAACAATAGCC---AGGC--------------------------ATTTTAAGTTGATA---TT ACA---AATGAACTGGTAATCTTCA------------GTTTACTAAATAATA-TA >Rousettus_aegyptiacus CAAATTAATTGAG---CAACAAATACTTGTTTGGGTTTATGTACATATAATACACTCAGGC---A---TTTTA---TTTA ATTTTTTTTTTA-----------------------ATTAAGAAATAATTAACATAT-AACATCTTATTAGTTTCAGGTGT ACAACACAGTGATTTGATATTTGTGTATAG-------------------------------------------------- ----------------------------------------------------------------------------CAC- ------AGTCTAGTTAAC----ACGTCACCA--------------------------------------CACACAATTAC AAATTCATTTTTTT------------------------------------------------------------------ -------------------------------------------------------------------------------- ---------------------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------------------------NNNNNNNNNNNNNNNNNNN NNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Condylura_cristata TAAATTAATTCAT---CAGCAAATAATAATTTGGCTTTGTGGACATACAATATACTCGAGT---G---TTTTA--AATCA ATCATGTCACCA-------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------TATCAACGGGGAACTTTCAGCTGAATATACAGTTTGCTA---AAAA-TC >Erinaceus_europaeus TGAATTAATGTAGCAACAACAAATACTTGTTTGGCTTTCTGGATATGCAACATTTACAG-----A---CTTTA--AATGA ATAATGCTACCA-------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------TTTTAACTAGCAATTTTCAGTTAAATGTGCAGTTTACTAAATAAAAGCC >Homo_sapiens AAAACTAATTTAG---CAACAAATACTTACATGGTTCTGTGGACATGTAACATCCCAAGGT---G---TTTTA--AATTG ATAATGTCACCA-------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------TATGAACTGATAATTTTCAGTTGAACATACAGTTTATTCTATAAAA-TC Dog525_LINE >L1MA9_3END -------------------------------------------------------------------------------- --------------------------------------------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAA AAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATATACGTATA-CAT----TG-TGAAATGATTACCACAATCA AGCTAATTAACATATCCATCACCTCACATAGTTACCATTTTTTTGTGT-----------------GTGGTGAGAACACTT ---------------------------------------------------------------------------- >Canis_familiaris TTGAGTTGC--TAGCCAGCAGAAC----TTGCCCCTAGTTATTCCTGTCTCTC-AAGACTTCTGA-GGGG---TAAGCCA TTCCCTTA--------------------------------------TTTTATTTTTTATTGAGATATAATT----AACAA TA-TCGTATTAGTTTTAG--ATGCAATGTAATGACTTGGTATATTTGTA-GAT----TGAAAAAATGATTACTACATTAA GTTTAAT------ATCCATCACCACAC--AGTTAC-ATTTTTTTTTTC-----------------CTT------------ ---TAA-ACCATTCAC-TTT---CAAAGAGTACTGACAAAGCCTAGTTTTGT---TATCTGGGAAGACTAGCTTAC >Felis_catus TTGAGTTAC--TGGTCAGCACAAC----TTGCCCCTAGGTATTCCTGTGTTTTGAAGACTTTTGA-GGGG---TAAGCCA TTCACTTA------TT----------------------------TACTTTATTTTTTATTGAGATATAATTGACATATAA CA-TTGTATTAGTTTTAGGCATACAACATAATGACTTAATATG--TGTA-GAT----TG-CAAAATGATTACTGCGGTAA GTTTAGTTAAC--ATCCATCACAACACATAGTT-CCATTTGTTTTTTC-----------------CTT------------ ---TAA-GCCATTCAC-TTC-----AAGAGTACTGTCAAAACCTAGTTGTGT---TACCTGGGAAGACCAG-TTAA >Manis_javanica CTGAGTTGC--TGCCTAGCACCAC----TCACCCGTAGACAGTACTGTTTTTC-AAGGCTTCTGAAGGGG---CAAGCCA TTCACTTT------ATTTGTTTGTATTT----------------TGCTGTATTTTTTATTGGGATATAATTAACATATAA CA-TTGTATGAGGTTTAGGTGTACAATGTGATGGTGTGATACATGTATA-TTT----TG-CAAAATGATTACTACAGTAA GTTTAGTTAAC--ATCCATCACCATGCATGGTTT-------TTTTTTT-----------------TTT------------ ---TAAAGCCATTCAC-ATT---AAAAGACTGCTTATAAAACCT---CGTGT---TACCTGGGAGGACTAGCTTAA >Sus_scrofa CTGAGTTCC--TGCGCAGTATCAC----TTGCCCCTAGCTATTTCTGTCTTTT-GAGACTTCTGA-GGGG---TAAACCA TTTACTTA------CTTTATTTATA----------------------TTTCTTTCTTATTGAGATATGAATGACGTACAA CA-CTGCATTAGTTTTAGCTATGTGACGTAATGATTTGATATATGTATA-TAG----TT-CAAAATGACTATTACCAC-- -----GTTAAC--ATTCGTCATCATACGTAGTTGTCACATATAGTTGCAGGGTTGTTCTGTTTTGTTT------------ ---TTT-GCCATTCAC-TTT---AAGAGACCGTTGACAAAACCTGGTTGTGT---TACCTGGGAGCATTAGCTAAA >Bos_taurus TTGAGTTGC--TGCCCAGCAACAT----TTGCCTCTAGATATT--TGTCTTTC-AAGACTTCTGA-GAAG---TAAGCCA TTTACTTT------ATGTTT------------------------TTCTTTCTTTCTTATTGAGATATGGTAGACATATAA CA-GTGTATTAGTTTTAGGTGTATAATGTAATGATTTTATATGTGTATATTAT----TT-TGAAGTG-CAACCACAATAA GTTTAGTTAAT--ATCCATCACCATACATATTTGCAG--------TTT-----------------TTT------------ ---AAA-GTCATTCACTTTT---AAGAGACTACTGACAA-------------------------------GCTTAA >Equus_caballus TAGAGTTGC--TGCCCAGCGCCAC----TTGCCACTCGATATTCCTGTCTTTC-AAGACTTCTGA-GGAA---TAAGTCG TTCACCTT------ACTTATTTAAT-------------------TGCTTTATTTTTTATTGAGATATAATTGACATATAA CA-TTGTATTAGTTT------------------------------TATA-TAT----TG-CAAAATGATTCCT---ATAA ATTTAGTTAAC--ATCCATCACCACACATAGTTACAA----TTTTTCT-----------------TTT------------ ---TAA-TCCATTTCC-TTT---AAAAGGCTACTGACAAAACCTAGTTATGT---TACCTAGGAGGCCTAGCTTAA >Ceratotherium_simum TTGAGTTGC--TGCCCAGCGCCAC----TTGCCACTAGATATTCCTGTCTTTC-AAGACTTCTGA-GGAG---TAAGCCA TTCACCTT------ATTTAATTAATTAAT---------------TAATTAATTTTTTATTGAGATATAATTGACATATAA CA-TTGTATTACTTTTAGGTAGACAACATAATGATTTGATATGTGTATA-TAT----TG-CAAAATGATTACCATAA--- -----GTTAAC--ATCCATCACCACACATAGTTACAATTTTTTTTTTT-----------------TTT------------ ---TAA-TCCATTCCT-TTT---AAAAGACTACTGACAAAGTCTAGTTGTGT---TACCTGGGAGGACTAGCTTAA >Myotis_myotis TTGAGTTGCTGTGCCCAGCACCAC----TTACCCCTAGATATTCCTCGCTTTC-AAGACTTCTGA-AGGG---AAAGCCA TTCCCTCC------CCCTCCTTTCCTCCTTCCTCCCTTCCATGGTATTTATTTTTTTATTGAAATATAATTGACATATAA CA-TTATATTCGTTTCAGGTAT---ACATGATGATTTGATATATGTATA-TAT----TG-CACAATGATTGCCACCATAA ATTTAGTTAAC--ATCCATCACCACAAATAGTTAAAA------AATTT-----------------TTT------------ ---TGA-GCCATTCAC-TTT---AAAAGACTACTGACAAAACCTAGTTGTGT---TACCTGGGAGGACTAACTGAA >Rousettus_aegyptiacus TTGAATTGA--TGCCCAGCTCTAC----TTGCCCCTAGGTATTTATGTCTTTT-AAGACTTCTGA-GGGG---AAAGCTA TTTCCTCC---TTTCTTCCCCCACCCCCTTCTCTCCTTTCCGTGGTATTTATTTTTTATTGAGATATAACTGGCATATAA CA-TTGTATTAGTTTTAGGTGTAAAACATAGTGATTTGATATGTGTATA-TATGTACTG-TGAAATGATTACCACAATAA GTTTAGTTACC--ATCCATCATCGCACATAGTTTCAA-----ATTTTT-----------------TTT------------ ---TAA-GTCATTCAC-TTT---AAAAGACTACTGACAAAACCTAGTTGTGT---GACCTAGGAGATCCTACCTAA >Scalopus_aquaticus TTGAGTTGT-------------ACA---GTGCCCCTAGGTATCCCTGCCTTTC-AGGACTT--AA-GGAC---TAAGCCA TTCTCTTG------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------GAAAGACTACTGACAAAATCT-GCTGTGT---TCTCTGGGTGGACAAGCTTAA >Solenodon_paradoxus CTGAGTTGC--TGGGTAGCATCAC----TTACC-CTGGATATTCCTCTCGTTG-AAGACTTCTTA-GGAG---TAAGCTA TTCATTTT------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------AAAAGACTGTTT-CAAAACCTACTTGTCT---TACCTGGGAGGAACAACTTTA >Tupaia_chinensis TTGAGTTGC--TGCCCAGCATCACTTATTTACTCCTGGATATTCCTGTCTTTC-AAGACTTCCGA-GGGA---TAAGCTA CTTGCTTT------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------GAAAGACTACCGACAGAACCTAGTTGTGTTACTACCTGGGAGGACTGGCCTCA Dog530_LINE >L1_CARN7_3END -------------------------------------------------------------------------------- -----------------GATGTAATGTA------CAGCATGGNGAATATAGTCAATAATATTGTANTAACNTTGTATGGT GACAGATGGTAACTAGACTTATTGTGGTGATCACTTCACAATGTATACAAATGT-------------------CGAATCA CTATGTTGTACACCTGAAACTAATATAACATTGTATGTCA----------------------------ATTATACTCAAA TAAAAAAA------------------------------------------------------------------------ ----------------------- >Canis_familiaris AAAACTAGGACCAGAGAT---------A---CTTC-CGAA-CTCCTTTAAA-----ATAT------TG-TATTTGCTAAA --GAGAGAAAATCT----------CAAA-----TTTTCACAAGAAA-------AAAAA-----TTGTAACTATATGTAAT GA-------TAACTAGACTT------GTGATCATTTCACAATATGTACAAATATGATCATTTCACAATATGTACATTTCA CTACATTGTACATCTGAAACTAATATAATGCTAAAAGTCA----------------------------ATTATATCCCAA TTTTTAAAAATCT--------TGTAAT--TGGTATTACTGAAAAGACCT---GGGTTATCAGCAGCCCGTGGCTATG--- ------------------GGTGG >Felis_catus -------------------------------------------------------------------------------- -------------------------------------------------------------------AACTATA----GT GACGGATGGTAACTAGACTT------GTGATCCCTTCACAATATATACAGATGC-------------------CGAATCA CTACATTGTACACCCGAAACTAATGTAATGTTAAAAGTCA----------------------------ATTATATCTCAA TTTTTAAAAATCT--------TGTAAC--GGTTATTACTGAGAAGACC--------------CTGCCCTTGGCTGCACCT GTAGGTCTGCCGCTA---TGTGG >Manis_pentadactyla AAAACAAGGGCCAGAGATATAGACAGCA---CTCA-TAAAGCCACTTAAAA-----ATATCA----TGTTAT-TGC-TAA --GAGAGTAGACCT----------CACAAATTCTCCTCACAAGAAA-------AAAGT-----TTGTAACTACCTGTGGT GACAGATGTTAACCAGATTTACT---GTGGTCATTTCACAATATAAACAAACAC-------------------TGAATCA ATACATTGTACACCTGAAACTAATATAATGT---ATGTCAGGTTATTATTATTGTTACTGTTTTTATTATTATTATTGAA TTATTGAATTATTAT------TATTAT--TATTATTACTGAAAAGATCT---GGT-AATCAGCAGCCCTCTGCTGGAGTT CTGGCTCTGCCACTAATTTGTGG >Sus_scrofa AAAAATAGGGCCAGAGATATAGACATCA---CTTC-TGAAGCTTCTTTAAA-----ATATGG----TATTATTTGC-TGA --AAGAGTAGATCT----------TAAAAGTTCTCTTCACAGGAGA-------AAAAAATGTTTGTAAACTACGTATTGT GCTGGATGTTAACTAGACATACTGTGGTGACCATTTCACAATATAT--AAATAT-------------------TGGATCA TTATGTTATACACCAGAAGCTAACAT---GTTAGATGTTA----------------------------ATTAAACCTCAA GAAAAAAATATGTATATG---CACCATTTTATTATTACTGACAAAATCT---GGG-AATCAACAGCCCTTGGCTGGAGTT CTGGCTCTGCCACTAACT--GGG >Bos_taurus AAAACCAGAGTCAGAGAATTCGGTAGCAGCGCTCA-TGAAACT--TTAAAT-----ATATAG----TGTTGTTTTC-TGA --GAGAGTAGATCT----------TAAAAGTTCCCATCACAGGGAA----------ACATTTTTGTCCACTATGTATGGT GCTGGATGTTAACTAGACATATTGTGGTGATCAGTTCACAATATACACAAATAT-------------------TGGATCA TTATTGTGTACATCTGAAGCTAATAT---GTTATATTTCA----------------------------ATTAAACCTCAA CAAAGTATA------------TATCAG--TATTATTACTGAAAAGATCT---GGG-AACCAACAGCCCTTGGGTGGAGTC TGGTCTCTGCCACTAATTTGTGG >Equus_caballus AAAACCAGGGCCAGAGATATAAACAGCA---CTTA-CGAAGCTAGTTTAAA-----ATATCT----TGTTATCTGC-AAA --GAGAGTAGATCT----------TAAAAGTTTTTATCACAAGAAA-------AAAAA---TTTTATAACTGTGTATGGT GACTGATGTTAACTAGACATATTGTAGTGATCATTTCACGATATATACAAATAT-------------------TGAATCA TTACATTCTACACGTGAAACTAATGT--------ATGTCA----------------------------ATTATACTTCAA TAAAAAAATCG----------TGTTAT--TACTATTACTGAAACAATCT---GGG-AATGAGCAGTCCTTAGCTGGAGTT CTGGCTCTGCCACTAACTTGTGG >Ceratotherium_simum AAAACAAGGGCCAGAGATATAGACAGCA---CTTA-TGAAGCTGCTTTAAA-----ATATCA----TGTTATTTGC-AAA --GAGAGTAGATCT----------TAAAAGTTCTCATCACAAGAAA-------AAGAAA--TTTTATAACTGTGTATGGT GATGGATGTTAACTAGACATATTGTAGTGATCATTTCACAATATATACAAATAT-------------------TGAATCA TTACATTGTACATCTGAAACTAATATATTGTTATATGTCA----------------------------ATTATACCTCAA TAAAAAAAATATTG-------TGTTAT--TGTTATTACTGAAAAGCTCT---GGG-AATCAGCAGCCCTTGGCTGGAGTT CTGGCTCTGCCACTAACTTGTGG >Myotis_myotis AAAACCAGGCCCAGAGACATAGACAGCC---CGCA-TGAGACT-----AAA-----GTAT------TGTTACTGGC---T --GAGAGTAGAT-T----------TGAAAGTTCTCATCACATTAAA-------AGAAA-----GTGTAAGTATGCATGAT GACAGATGTTAACTAGACACATTGTGGTGATCATTTCACCACATATACAAATAT-------------------GGAATCG TTACATTATACACCTGAAACTTATAGGATACTATGTGTCA----------------------------GTTGTATCTCTA AAAA-----------------TATTGTGCTATTGTTTCTGAAAAGATCT---GGG-CATCCGCAGCCCGTGGCTGGCGTT CC--CTCTGCCACTAATTTGGAG >Rousettus_aegyptiacus AAAACCAGGGCCAGAGACATAGATAACA---TTCA-CGAAGCTACTCTAAA-----ATATTG----TGTTGTTTGC-TGA --GAGTGTTGATCT----------TAAAAGCTCTCATCACATGAGA-------AAAAAA----AAAATACTATGTATGGT GACAGATGTTAACTGGA-ATATTGTGGTGGTCATTTTACAATATACACAAATAT-------------------TGAATCA TTACATTGCATACCTAAAACTAATATGATGTTATATGTCA----------------------------AGTACATTTCAA CCCCCC---------------CCCCCT--TTTTTTTTCTGAAAAGATCT---GGG-AATCAGCAGCCCTTGGCTGGAATT CCGGCTCTGTCACTAAGTTGTAG >Condylura_cristata AAATCCAGAGCCAGAGGAACAGATAGCA---ACCA-TGAAACTCCTTTA-------GTA-------TGTTATTATCATTA --CTGAAAAGATCT------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------GGG-AATGGGCAGTTCTCGGCTGGCCTT CTGGCTCTATCACTAATTGGTGG >Homo_sapiens AAAACCAGGGCTAGGGATATAGACAGCA---ATCAGTGAAGCTACTTTAAA-----GCAT------TG-TGTTTTTATTA --TGGAAAAGATCT------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------GGG-----------------CTGG-GTT CTGGCTCAGCCACTAACTCACAG >Erinaceus_europaeus AAAACCAAAGTGAGACACGTATTTGACC---TTCA-TGACGCTTCTTTAATAGATCAGATCGC---TGTCACTATTATTA TTATGAACAGAGCT------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------GGG-AACCAGTGGCCCCTGACTGGAGTC CTGGCTCTGCCACTAATTTCTGG Dog532_LINE >L1_CARN7_3END -------------------------------------------------------------------------------- ----------------------TTTTTT-TATTTGAGTATAATTGACATACAATGTTAT-------ATTAGTTTCAGGTG TACAAC------------------ATAGTGATT------------CGACATTT-----GTATACATT-------GTGAAG TGATCACCACAATAAGTCTAGTTACCA-TCTGTCACCATACAA------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --- >Canis_familiaris AAATGATTTGTCAATAAGCACGCATAGCTGGAAC-TTGAACCCAATTTTAC---TAGAGTCCAAGTTTT---ACTTATTT TCTTTTTACTATGAGTTAGCTA--TTTT-TATTGAGATATAACTGACATACAACATTAT-------ATTAGTTTCAGGTA TACAAT------------------ATAATGATT------------TGATATATATTGCATGTATACT-------GTAAAA TGTTCATCACAGTAAGTCTAGTTAACA-ACT---------------TAGACTCCAAATTTT---AAATGCTCTTCTTTC- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------TATACCAT-GTAACTTTTCCAACACCCTGGAGT CAA >Felis_catus GAATGACTTGTCAATAAGTAAACATAGGTAGAAC-TTGAAACCAATTTTAC---TAGACTCCAAGTTTT---ATTTATTT TCTTTTTACTATTACTTAGCTA-TTTTT-TATTGAGGTATAAATGACACATAACATTAT-------TTTAGTTTCAGGTG CACAAT------------------ATGAT------------------------------TCAATATT-------ATAAAA TGATCATCGCAGTAAGTCTAGTTAACG-TCT---------------TAGACTCCAAATTTT---AAGTGCTCTTCCTTC- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------TATACCAT-AGAGCTTTTCCAACACACTGGAGT CAA >Manis_pentadactyla AAATGACTTGTCAATAAGCAGGCATAGCAGGGAC-TTATACCAACTCCCAC---TAGAGTCCAAATCTT---ATG---TG TTTTTTTACTATGACTTTGCTGCTTTTTAAATTGAGATATGACTGACATACAACATTAT-------GTTAGTTTCAGGTG TGCATT------------------ATATTGATTTCAGGTGTACACCATAGTTT-----GTATATATT-------GTGAAA TTATCACCACAATAAATCTAGTTAACA-TCT---------------TAGATGCCAAATTTT---AAATGCTCTTCCTTC- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------CACACTGTTATAGCTTTTCTCACATGCTGGAGC CAA >Sus_scrofa AAATGACTTGTCAATAGGCAGGCATAGCTGGGAC-TTGAACCTAACTCTAC---TGGACTCCAAATTTT---ATT----T ATTTTTTGCTATGACTTAGCTA-TATTT-TATTGAGGCATAATTGACATACAACATTAT-------ACTAGTTTTAGGTA TACAAC------------------AAAATGATT------------TGAAATTT-----GTATATATT-------GTGAAA TGATCACCACAATAAGCCTAGTTAACA-CCT---------------TAGACTCCGAATTTT---AAATGTTCTTCCCTCG GAGTTCCTGCTGTGGGGCAAAGGATCGGCAGTGTCTTGGGAGCGTTGGAATGCAGGTTCAATTCCCAGCCCACCACTGTG GGTTAAGGATCTGGCATTTTGCTGCAGTTGTGGATTAGGTCACGACTGTGGCTCAGATCTGACCCTGGACACAGGAACTC CAGATGCTGTGGGGCAACCAAAAAAGGAGAAAAAATATTCTTTCTTATATACCAC-ATAGCTTTTCCAACACACCGGAAT CAA >Bos_taurus AAATGACTTG-----------GCATAGGTGGGACTTTGATCCCAACTCTGC---TAGACTATAAACTTT---ATT----T ATTTTTTACTATGATTTT-CTA-TATTT-TATTGAGGTGGAATTAACACATAACATAGTGAAGAACAGGGAAGCCAAGTG TGCTGCAGTCCATGGGGGTCACAAAGAGCGACT------------GAGCGACTGAACAACAAACAATTATGTTAGTTTCA GGATCACAACAATAAGTCTAGTTAACA--CG---------------TAGACTCCAAAGTTT---AAATGTTCTTCCCTC- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------TCCACTGT-ATAGCTTTTCCCACACACTGGAGT CAA >Equus_caballus AATTGACTTGTCAATAAGCAAGCATAGCTGGGAC-TTGAACCCAACTCT-------GACTCCAAATTTT---AT-----T TTTTTTTACTATGACTTTGCTA-TTTTT-TATTGGTGTATAATTGACATACAATATTAT-------ATTAGTTTCAGGTG TATAAC------------------ATAATGATT------------CGGTATTT-----GTGTATATT-------GCGAAA TGATCACCACAATAAGTCTAGTTAACA-CCT---------------TAGATTTCAAATTTT---AAGTGCTCTTCCCTC- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------CACACAAT-ATAGCTTTTCCAACACACTGGAGT CAA >Ceratotherium_simum AAAGGACCTGTCAACACGCAAGCATAGCTGGGAC-TTGAGCCCAACTCTAC---CAGACCCCAAATTTT---ATT-TTAT TTTTTTTACTATGACTTTGCTATTTTTT-TATTGAGGTATAATTGACACATAACATTAT-------ATTAGTTTCAGTTG TACAAC------------------ATAATGATT------------CAATATTT-----GTATATATT-------GTGAAA TGATCACCACAATAAGTCTAGTTAACA-CCT---------------TAGACTCCAAATTTT---AAATGCACTTCCCTC- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------CATACCAT-ATAGCTTTTCCAACACACTGGAGT CAA >Myotis_myotis AAATGTCTTGTCAATAAGCAGGCATCGCTGGCAC-TTGGACCTAATTCTAC---TAGACCCCAAATTTA----------- ATTTTTTACTATGACTTTGCTA--ATTT-TATTATAGTATAATTGACATGCAATGTTAT-------ATTACTTTCAAGAG TACAAC------------------ATAATGATT------------CAGCATTT-----GTATATATT-------GTGAAA TGATCATCACAATAATTCTAGTTAACA-TCT---------------TAAATTCCAAATTTT---TATTGCTCTTGCCTC- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------CATACTAT-ATAGATTTTCTAACACATTG-AAT CAA >Rousettus_aegyptiacus AAATGACTTGTCAAGAAACAGGCGTAGCTGGTAC-TTGAAGCCAACTTTAA---TAGACTGCAAGTTTT----------- --TTCTTACTATGACTTTACTATTTTTT-TGTTGAGGTATAATTGACATGCGACATTTT-------ATTAATTTCAGGTG TACAAC------------------ATAATGAAT------------CAATATTT-----GTAAATGTT-------GTGAAA TGATCACCACAATAAGTCTAGTTAACATTCT---------------TAGATTCCAAATTTT---TATTGCTCTTGCCTC- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------CACACTAT-ATAGCTTTTCCAGTATACTGCAGT CAA >Condylura_cristata AAATGGCTTGTCAATAAGCGGGGATAGCTGGGAA-TTGAACCCAACTCTAC---TAGACTCCAAATTTT----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------AAATCTTGTTCCCTC- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------TACGCCAT-ATAACTTTTCCAACACTATGGAGT GAA >Erinaceus_europaeus AAAACACTCATCATTAAGCAGTTATAGATGAGAC-TTGAACCTAATGCTAT---TAGACTCCAAATGTC----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------AAATATTCTTCCCTC- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------CATGCTAT-CTAGCATTTCCAACACAATGGAGT CAG >Homo_sapiens AAATGACTTGTCAATAAATAGGCACAGCTGGGAC-TTGAAACCAGCTCTAC---TAGACACCAAATTTT----------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------AAATGCTCTTCCTTC- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------CATACCAC-AAAGCTTCTCCAACACACTGGAGT CAA Dog543_LINE >L1MA9_3END -------------------------------------------------------------------------TTTTTCC AGCTTTATTGAGGTATAATTGACAAATAAAAATTGT-ATATATTTAAGGTGTACAACGTGATG----------------- -------------------------------------------------------------------------------- ------------------------- >Canis_familiaris TTATGTAGAATTAACAAAGGAGATGGACAAGTGGTATTAACATTAA----AGAAAAAAA------AAATC---------- AGCTTTATTGAGGTATAATTGAC-ACTAAAA-TTGTAAGATATTT---------------------CTT--TTTTTCTTT TC---ATCAAATGTAGCTTTGTTTTGTGTTTTT-------AAACTA-----TTTTGTTGTATTTTT-----TATG-TACT TGGATCTAGTTGTTAA-AAGTAGAG >Felis_catus TCTTATAGAATTAACAAAGGAGACAACCTTGTGATATTAACATTTA--------AAAAA------CAATC---------- AGCTTTATTGAGGTATAATTGATAAATAAAA-TTATAAGGTATTT---------------------AT---TTTTCCTTT TC---ACCAAATGTATCTTGGTTTTGTGTT----------AAAGTA-----TTTTGTTGTATTTTT-----TATG-TACT TGGATCTAGCCATTAA-AAATAGAG >Manis_pentadactyla TCTTGTAGAGTTAGT-------ACAGATTAGCAGTGTT-ACGTTAC---TTTTAAAAAA------GATTC---------- AGGTTTAT-------------------AAAA-TTGTAAGATATTT---------------------CTAT-TTTCCCTGT TC---GCCAAATGTAACTTGATATGGTGTTTTT-------GAA--------TTATTTTGTATTTTTAAA--AATG-TACC TGGATCTAG-----AA-AGGCAGGG >Sus_scrofa TCTTAGAGAATTAATAAAGGAGACAAAGTAATGGTGTT-CTGTTAC----TTAAAAAAA---TTTTCTTC---------- AGCTGTATTGAGGTATAATTGACAAA--AAA-TCGTAAGATATTT---------------------ATC--TTTTTGTTT TC---ACCAAATGTAGCTTGATGTTGTGTTTTT-------AAGCTA-----TTTTGTGGATTTAAAAAA--ATTG-TTCT TGGATCTAGCCATTAA-AAATAGAG >Tursiops_truncatus TCTTATAGAATGAATAAAGGAGACAGATTAGTGGTGTTTATATTAA----------------TTTTTTTC---------- AGCCGTATTGAGGTATAATTGACAAATCAAA-CTGTAAGATATTT---------------------CTCT-TTTTTGTTT TC---ATCAAATGTTGCTTGGTGATATGTTATT-------AAGCTA-----TTTTGTTGAATTTTTAAAAAAATG-TACT TGGATCTAGCCGTGAA-AACTAGGA >Myotis_myotis TCTTGTAGCATTAATAAA-GTGACAGTCTGGTGGTATT-ATATTAC----TTTCAGTCAAAAAAAAATTC---------- AGCTTTGTTGAGGTAGAGTTGACAAGTAAAA-TGGTAAGATATTTGT------------------------TTTTTCTTC TT---GCCAAATGTAGCTTGAT---GTGCTTTT-------AAGCTT-----TTTTGTTGTATTTTT-----GATG-TATC TGGTTCTAAACATTAAAAAATAGAG >Rousettus_aegyptiacus TCTTGTAGAGTTAAT-AAGGTGACAGACTGGTGATATT-ATATTAC----TTTAAAAT----TTTTTTCC---------- ----------AGATATAATTGACAAATAAAA-CTGTAAGACATTTGTTTTTCT-------------TTTTCTTTTTCTTT TT---GCCAAATGTAGCTCGATGTGGTGTTTTA-------AAGCTG-----TTTTGTTGTGATATC-----TGTGATATC TGGTTCTAGCCATTAA-AAATAGAG >Equus_caballus TCTTGTAGAATTAATAAAGGTAACAGACTAGTGGTGTT-AGGGTAA----ACTC--------TCTTTTTC---------- -------------------------------------------------------------------------------- -----ACCAAATATAACTTGCTGTTGTGTTTTTAACTTGGAAATGAGTTG-TTTTATTGTGTTCTT-----GCTG-TACT TGGATCTAGCCATGAA-AAGTAGGG >Ceratotherium_simum TCTTGTATAATTAATAAAGGTAACAGACTAGTGGTGTT-ATATGAA----ACTCTCTT----TCTTTTTC---------- -------------------------------------------------------------------------------- -----ACCAAATGTAACTTGATGTTGTGTTTTTAACTTTGACGTGAGTTG-TTTTGTTGTGTTCTT-----TCTG-TACT TGGATCTAGCCATTAAAAAATAGAG >Condylura_cristata TTCTGTAGAATTAATAAA---------CTAGCAGTATT-ACATTAA----ACTTGTTT----TCCTTTTT---------- -------------------------------------------------------------------------------- -----CCACAATGCAACGTGATGTTGTGTTTTTCACTTTGAAATAA---------GTTGT----------------TGTA TGCATCTAG--------AAATAGGG >Erinaceus_europaeus TCATATAGAAT----AAGGGTAGCAGGATAGTAGTAGT-ATATTAA----ACTCCTTT----TCCTTTTC---------- -------------------------------------------------------------------------------- -----ATCAAATTTAATTTGA-----TGTTTTTAACTTTGAAATGGGCTG-TTTTGTTGCATT--------TATG-TACT TGGATCTAGTTATTAA-AAATAAGG >Homo_sapiens TCTCGTGTATTTAATAAAGCTGACAGACTAGTGGTGTT-ATATAAA----AATCTTCT----TCATTTTC---------- -------------------------------------------------------------------------------- -----ACCAACTATTACTTGATGATGTGTTTTAAACTTTGAAATGAGCTGTTTTTGTTGTATGTTT-----TATG-TACC TAGATCTAGCCATTAA-AAATAGGG Dog553_LINE >L1MA9_3END ---------------------------------------------------------------------------TGTAC AGCATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTT--AAGTGTTCTCACC ACACACAAAAAAATGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTA-----ATCATTTCACAATG TATACGTA--TATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCT GGAAAAA------------------------------------------------------------------------- --------------------- >Canis_familiaris TCCAGCAGCGTCTTAACAGACTTCTCAAAGATAGCGCACACCGCCTT-GGG---AAGGAAGCAACGGGACGA-------- ------ATGA-GATAAACAACA-----CTATTACGATCATCAAACTTGCCAAGAGACTAGATCTT--AATTATTCCAACC AC-TAAAAAGAAATTATAATTGTGTGACTTGATAGGGGTGTTAATTA-TCATACAGCAGTA-----ATCATATTATAATG TAGAATTG--CATCAAATCCACATACTGTACACCTTGAATTTAAACAA-TGTTAAACATCAGATACATTTCAATTGAAAA AAAAAAATAAAGAGAAAAGG---AAGAAAGCAAAGGGACCT---TGGTTAGCAGGTCATAATCAGCTGGAATAGAACTGA GGCCCTGCACAGAGAAGGCCT >Felis_catus TCCAGCAGTGTCTTAACAGACTTCTCAAAGATAGCGCACACCGCCTT-GGG---AAAGAAGCAAAGGGGCCC-------- ------AGGA-AATAGACAACA-----GTATTATGATCATCAAACCTGCCAAGAGACTAGATCTC--AATTATTCCAACC CC-TAAAAAGAAGT-ATAATTATGTGATGTGATAGGGATTCTAATTA-TCATACGATGGCA-----ATCATATTATAATC CATAAATG--TGTCAAATCAACATGCTGTACACCTTAAATTTATACAA-TGTTAACCGTCAAATATATTTCGTTTAAAAA AAAAAGAAAAAAGG---------AAGAAAGCGAAGGGGTCC---TGGTTAGCAGGTCACAATCACCCAGAACACAACTGA GGCTCTGCACAGAGGAGGCCT >Manis_pentadactyla TCCAGTAGCGTCTTAACAGACTTCTCAAAGATAGCACACACCGCCTT-GGG---AAGAAAGCAAA-GGGCCC-------- ------ACGA-AATACGTAACAGTATTGTATTATAATCATCAAACTTGCCAAGAGACTAGATATT--AATCATTCTGAAC AT-TAAAAAGAGAT---AATTATGTGATGTGACAGGGGTGCCAATTCTTGCTACAGTGGCA-----ATCAAAATACAATG TATAAATG--TATCAGTTTAACAT-TTGTATACCTTAAGTTTAAACAA-TGTTATATGTCATGTAGATTTCAGTTAAAAA AAAAAAAGAAGAAGAAAGC----AAGCAAGCAAAGGGGCCC---TGGTCAGCAAGACACAACTGGCTGGAACAGAACTGA GGCCCTGCAGAGAGGAGGCCT >Equus_caballus TCCAGCAGTGTCTTAACAGACTTCTCGAAGATAGCGCACACCGCCTTGGGG---AAGAAAGCAAAAGGGCCC-------- ------ATGA-AATGGACAGCAATATTGTATTATAATCATCAAACTTGCTAAGAGACTAGATCTC--AA-TATTCCAACC AC-TAAAAAGAAACAATAATTATGTGATGCTAC---------------TGCTAGAATGGCA-----ATCATATTACAACA TATAAATG--TGTCAAATCAACATGTTGTACACCTTAAATTTACACAA-TGTTATGTGTCATATATATTTCAATTAAAAA AAAAAAAAAA-------------AAGCAAGCAAAGGGGCCC---TGGTCAGCAGGTCACAATAGGCTGGAACAGAACTGA GATCCTGCACAG---AGGCCT >Ceratotherium_simum TCCAGCAGTGTCTTAACAGACTTCTCGAAGATAGCGCACACCGCCTT-GGG---AAAAAAGCAAAAGGGCCC-------- ------ATGA-AACAGACAGCAATATTGTATTATAATCATCAAACCTGCTAAGAGACTAGATCTTAAAATTATTCCAACA AC-TAAAAAGAAATGATAATTATGTGATATGAT---------------TGCTATAATGGCA-----ATCACATTATA--- ------TG--TGTCAAATTAACATGTTGTACACTTTAAATTTACACAA-TGTTATATATCAAATATATTTCAATTTAAAA AAA--------------------AGGCAAGCAAAGCAGCCT---TGGCCAGCAGGTCACAATTGGCTGAAACAGAACTGA GACCCTGCACAGAGAAGGCCT >Myotis_myotis TCCAATAGCGTCTTAACAGACTTCTCGAAAATAGCGCACACCGCCTT-GGG---GGGAAG-CAAAGGGGCCC-------- ------ATGA-AAGAGAAAAAAATATTGTATTATAATCATCAAATTTGCTAAGACACTAGATCTT--AATTATTCTAACT AC-TAAAAAGAAATGCTAATTATGTGACACGACAGAGGAGCTAATTATGGCTATAATGGCAATTTTATCATGTTACAATA TAGAAATG--TATCAAATTAATATGTTGTAGACCTTAAATTTACACAT-TGTTATATGCCATATATATTTCAATTGAAAA AAAA-------------------GAAAAAGAAAAGGGGCCC---TGGTCAGCAAGTCACAATAGGCTGGAACAGAATGGA GGCCTGGCACAGAGGAGGCCT >Rousettus_aegyptiacus TCTAGCAGCGTCTTAACAGACTTCTCAAAGATAGCGCATACCGCCTT-GGA---GAGAAAGCAAAGGGACCC-------- ------ATGA-AATAGAAAACAATATTGTATCATAATCATAAAATTAGCTTAAAAACTAGATCTT--AATTATACTAACC AC-TAAAAAGAAAT--------TATAAGGTAATAGAGGTGCTAACTATAGCTCTAATGGCA-----ACTGTATTATAATA CATAAATG--TATCAAATCAATATGTTGTATACCTTAAACTTACACAG-CATTATATGTCAAATATATTTCAATTAAAAA AAAAGAAAAAAGAAAAA------AAGAAAGCAAAGGG-CCC---TGGTCAGCAGGTCACAATCAGCTGGAACAGAACTAA GG-------------ATGCCT >Condylura_cristata TCCAGCAACGTCTTAACAGACTTCTCAAAGATAGCACACACGGCCTT-GGG---AAGAAAGCAAAGGGGTCC-------- ------ATGA-AATCGACACTA----TTTACCATAG-CATCAAACTTGCTAAATCGCT---TAGC--ACTTATTCCAAGC AC---ACAGGGAATTATAATTATGTGAC-TGA-GGCGATGCCTGCT--CACTACAATGCCA-----AT--TGTTATAACA TAAAAGTG------TAACTAATACATTGTACCACTTAAATTTATACAA-TGTTATATGCTAAGTGC--TTCAATAAAAAA TGAAAAAGGC-------------AAGAAAGCAAAGGGAACC---TGATCAGCAGATC-CCACTGGCTGGAGTAGAA-TGA G---CTCTACAGAGAAGGCCT >Erinaceus_europaeus TCCAGCAGAGTCTTAACGGACTTTTCGAAGATAGCGCACACCGCCTT-GGG---AAGAAAACAATGGAACCC-------- ------ATGA-ATGAGACGACAGCATTGTGTTA------TCAAATTTTCTAAAAGGCT--ATCTT--AACTATGCTAATT AC-TAAAGGGAAGT-CTAATTATGTGGCATGGCAAAGGTGCTAAT---TGATACCGTGGCA----------ATTAAAATC TATATATGCCTATTGAAACAGCATGTTGTACACCTTAAATTTATGCAG-TATTTCACGGCAAGTGTAGCTCAATTTAAAA AGGGAAAGAGGAAAAAAGA----GGAAAGGCAAAGGA---------GCCACTGGTTCATGATTGGCTGGAACAGAACTGA GGCCCTGCACAAAGGGGGCTT >Sus_scrofa TCCAGCAGCGTCTTGACGGACTTCTCAAAGATAGCGCACACCGCC-T-GCG----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------AAGACAGCGGACGGCTCC---TGGTCAGCAGGTCGCCGTCGGCTGGGACACACCTGA GGGCCTGCACAGACAAGGCCT >Bos_taurus TCCAGCAGCGTCTTAACGGACTTCTCAAAGATAGCGCACACCGCC-T-GGG----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------AAGAAAGCAAAGGGGGCC---TGGTCAGCAGGTCACCGCTGGCTGCAGCAGAACGGA GGCCCTGCACAG---AGGCCT >Homo_sapiens TCCAGCAGCGTCTTAACAGACTTCTCAAAGATAGCGCACACCGCCTT-GGG----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------AAGAAAGCAAAGGGGCCC---TGGTCAGCAGGTCATGACTGGCTGGAACAGCGCTGA AGCCCTGCACAGAGGGGGCCT Horse3_LTR >ERV3-5-EC_LTR ----------------------------------------------------------------------TGTTGGAGGA GGTCAT-------CAAGAGGACGTGACCATGACCACCGGTTGACCCGCGA--GCTGGACCCGGGCAATCGGAGGCTCCTC ACCCCCTCC--TGTCCTTGGAATGTACGTTCCACCCGCCTTTCCNCTCCCAGA-AGCCGCTTCAAGGATACAGCCTTGAG AGAGTAATGTGTTGTTGAGACCATCTGGACTGNGTACGTGACTGAACCCAGT-TAAGGCCTCTATATAAACTTTTAAGAT TCTGGCGGGCGGGTGCGGAGATCTACTCATCTTGCGGCCGCCCAAGACAAGC-------CTCGTAAGTAAGTTCCCTTGC TTATTAAACCTGCCACCTACCAATCTGGAGTGGTCTG------------------------------------------- ---------------CCTCTTTCTTCGGTCTCTCCTTGCCCTCC-------------------------GTGTACGGGGG CCAGTTTCAGATTTCACCCGGGAAGCTCCCGAGGTTGCGAACCAACA--------------------------------- ----------------------------------------- >Sus_scrofa GCAGCTGCCAGGTCACACCTCCCCACACTCTGCAGAGA------AGAACATG-CTGG---GGAGT-----GGTTAGAAGA GGTCATGGGGGGAGGGGGGGA------CATGACTGCCAGTTGACCTGTGA--GCTGGA------CAATCAGAGGCACCCT ATCCCCTCTCCTATCCTTGGAAGACACATTCTGCCCTCCATTCCCACAGTGGGAAACTGTTTCAAGGAAGTAGCCTTGAG AGAGCACTGTGTTGTTGAGCCCTTCTGGATGGTATACCTGGCTGAACCCACT-TAAGGCCTCTATATCCACTTTCAAAAT TCTGGCAAGCAGATATGGAGATCTGCTGGTCTCAGAGCTGCCCGAGACAGGC-------CTCATATGTAAGTTCCCTGAC TTAATAATCTTGCCACTTGCCAACCTGGAGTGGTCTG------------------------------------------- ---------------CCTCTTTCTTTGGACTCTCCTGGCCCCTGTGTGGTTTGGGTGGGAGGTGTGGGGGTGT---GGGG TTAGTTTCAGATTTCACCTGGGGAATCCTTCAGGATGCCAACCAGGA---GGGGC---TCTTGAAATTCCACTCCC---- ------CCTGCC---CCTGTGATCCAACATAACATCTTTGT >Bos_taurus GCAGCTGGCATCTAACGCCTCCCCACATTTTGCAGAGA------GGAGACTGCCTAG---GGAGT-----GGTGGGAGGA GGTCAT-------GGAGAGGA------CATGACTGCCTGGTGACCTGTGC--GCTGGACCCGAGCAATCAGAGGCTCCTC ATCCCCTTCT-TGTCCTTGGAAAGCATGTTATGCCCACAGTTCTCACAGTGGG-AACCATTCCAAGGAAGTAGCCTTGAG AGAGCAATGTGTTGCTGAGAC--TGTGGATGGCATACATGACTAAACCCACTGGAAGGCCTCCATACCAACTTTTAAAAT TCTGGCAGGCAGCTGTGGAGATCTGCTAGTCTTACAGCTGCCCAAGACAGGCAGATGTAATGTAATGTAAATTCCCTGGC ATATTAATCCTGCCACCAACCAAGAAAGAGTGGCCCA------------------------------------------- ---------------CCTCTTTCTTCTGTCTCTCCT---------------------------------GTAT----GAG ACAG----AATTTTTACCTGGGGAACCTCTGAGGTTGCAAACTAGC----AGGAT---TCTTCAAATTTGATTTCC---- ------CCTGCC---CCTGTGACCCAACAGAACATCATTGT >Equus_caballus GCAGCTGCCAGCTAA-ACCTCCCTGCCTTCTGCAGAGA-CTCCTGGAG--TGCCTGG---AGAGC-----TGTTGGAGGG GTTCAT-------CAAGAGGA------TGTGACTGCTGCTTCATCTGTGA--GCTGGACCCAGGCAATCAGAGGCTCCTC ACCCCCTCCCTGGACCTTGGCATGTACATTTCACCCACTCTTCCCATAGTGGA-AACCGTTTCAAGGACGCAGCCTTGAG AGAGCAATGTGTTGTTGAGACCATCAGGACAGTATACATGACTGAACCCAGT-AGAGGCCTCTGTGTGAACTTTTAAAAT TCTGGTGGGTGGATACAGAGATCTACTCATCTTGCAGCCAATCAAGACAAGC-------CTCATATGTAAAGTCCCTTGC TTATTAAACCTGCCACCTCGCAGTCTGGAGTGGTTTA------------------------------------------- ---------------CCTCTTTCTTCAGTCTCTCCTTGCCCTCC-------------------------ATGTATAGGGG TCAGTTTCAGATTTTACCTGAGGAACTCCTGGGGTTGGGAACCA-CA---AGAGT---TCATCAGATTCCACTCCC---- ------CTGGCC---CCTGTGATGCAACATAACATCTTCAT >Tapirus_indicus GCAGCTGCCAGCTAA-ACCTCTCTGCATTCAGCAGAGA-CTCCTGGAG--TGCCTGG---AGAGT-----TGTTGGGCGA GTTCAT-------CAAGAGGA------TGTGACTGCTGGTTAATCTATGA--GCTGGACCCAGGCAATCAGAGGCTCCTC ACCCCCTCCCTTGTCCTTGGAATGTACATTCCACACGTTGTTCCCATAGTAGA-AACCATTTCAAGGACACAACCTTGAG AGAGCAATATGTTGTTGAGACCATCTGGACAATGTTAGTGACTGAACCCAGT-AAAGACCTCTATATAGACTTTTAAAAT TCTGGTGGGTGGATAAGGGGATCTACTCATCTTGCAGCCAATCAAGACAAGC-------TTCATATGTAAGCTCCCTTAC TTATTAAACATGCCACCTACCGATTTGGAGTGGTTTA------------------------------------------- ---------------TCTCTTTCCTCAATCTCTCCTTGCCTTCT-------------------------GTGTACAGAGG CCAG------ATTTCACCCAGGGAACT-CTGGGGTTGTGAACCAATA---AGAGT---TCTTCAGATTCCACTCCC---- ------CCTGCC---CGTATGATCCAACATAACATCTTTGT >Rhinolophus_ferrumequinum GCAGCTGCCAGCTAACGTCTCCCCACATTCCGCAGAGAATGCCTAGAGAGTTCCTGG-------------------AGGA GGTCAT-------TGAGAAAG------TGTGACCCTTGGTTGACCCGGAA--ACTGGAACTGGACAATCAAGGGCTCCTT ACTTTCTTCCATGTCCTTGACATGTACCTTCTGCCCACTGTGCCCACAATGGT-AACCCTTTCAAGCACACAGCCTTAAG AAAGCAGTGTGTTGTTGAGACCCTCTGGGTGATATTCATGGCTGAACCCAGT-TAAGGCCTCT-CCTAAACTTTTTAAAT TATGATGGGTAGATATGGAGATCTACTGGTCTTA---CTGCCCAGG---------------------TAAGTTCCCTTGC TTATTAAACCTGCCACCTACCAATCTGAAGTGTTTTA------------------------------------------- ---------------ACTCTTTCTTCAATCTCTCCTTTCCCACT-------------------------GTGTATGGGGG CCAGTTTTAGATTTCACCCGGAGAGCTCCTGAGGTTGCAAACCA------AGAGT---TCTTCATATTCCATTCCC---- ------TCAATC---CTCATAACCCGACAAAATATATTTGT >Pteropus_vampyrus GCAGCTGCCAGCTAATACCTCCTCACGTTCTGCAGAGA------GGAGAGTGCCTAG---AGAAT-----TGCTGGAGGA GGTCAC-----------------------------------------TGA--GCTGGACCTGGGCAATCAGGGGTTTCTT GCCCTCTCCC-AATCCTTGAAATGTACCTTCTACCCACCATTACAACAACGGG-AACCATTTCAAGGACGCATTCCTTAG AGAGCAATGTGTTCTTGAGACCATGTGTGCGGTATACATGGCCAAACCCAGT-TAAGGTTTCTACATAAACTTTTAAAAT TATGGTGAGCAGATATGGAGATATACTGGTCTTA---CTGCCCAAGACAAAC-------CTTGCACATAAGTTCCCTTAC TTATTAAACCTGCCATGTTCCAATCTGGAATGTTTTA------------------------------------------- ---------------CTTCTTTCTTCAGTCTCTCCTTGCCCGCT-------------------------GTGTATAGGGG CCAGTTTTAGATTTCACCCTGAGAGCTCCTGAGATTGCAAACCA------AGAGC---TCTTCAAATCCCATTCCC---- ------CCTGCC---TTTATGATG----------TCTTTGT >Manis_pentadactyla GCAGCTGCCAGCTAACACTTCCCTG-ATCCTGCAGAGA------GGAGAGCACCTAG---ACTGT-----TGTTGCTGGA AGTCTC-------TGTGAGGA------CATGAACACCAGG-GACCAATGAACACTGCCTCTGGGCAACCGGAGGCTCCTT ACCTCTTCCTCTGTCCTTGG---------CCTGCCCATCATTC----ACCAGG-AAACATTTCAAGAATGCAGCCTTGAG GGAAAAATGTGGTGTCAAGATCATCTGGATGGTATATGTGACTAAACTCAGT-TAAAGCCTGTATATAAACTTTTAAAAT TCAGGCAGATGGGTGTGGAGATCCAGGTGT-TTGCATCCACTCAAGACAAAC-------CTTGTATGTAAGTTCTCTTGC TTATTAAACTGGCCACCCTATCCATTAGAGTGGCCTGATCTTCCTTCCTTCCTTTCTTTCTCTGTCTCTTTTTTTTTTCT TACTGGACTGACCCTACTCTTTCTTCATTCTGTCCTTGCCCTCC-------------------------ATATATGGAGG CCAGTTTCCAGTTTCACCCCAGGAATTCCTGAGGTTGCAAACCAACA---AGAGT---TCCTCATATTCCACACACACAC ACACACCTGGTC---CCCATGACCCAACATAACATCTCTGT >Canis_familiaris GCAGCTGCCAGCTGACCCCTCT-TGCATTCTGTGGGAA------GGAAACTGCCTGG----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------AGAGT---TCTTTAAATTCCACTCCC---- ------CTAACC----CTATCACCTCACATAACACCTTTGC >Felis_catus GCAGCTGCCAGCTAACACCTCT-TACATTCTGCAGAGA------GGAGAGTGCCTGG----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------AGAGT---TCTTTAAATTCCACTTCC---- ------CCTGCC----CTATGACCCAACATAACATCTCTGT >Condylura_cristata ACAACTGCCAACTAACACTACCTTGCATGCTACAGAAC------AGAGACTATCTGG----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------AAAGC---TCTTCAAACTCTACTTCC---- ------TCTGTC---CATCTGAACCAAAATAACATCTTCAT >Solenodon_paradoxus GCAGTTGCCAGCTAGCACATCCCTGAATTTTGCAGGGA------GGAAATTCCTTGG----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------AAAGG---TCTTCAAATTCTGTATGC---- ------CCTGCATAGCCTGTGACAGAACAGAATATCTTTTT >Homo_sapiens GCAGCTGCCAGCAAACACCTCCCTGTGTTCTTCAGAGA------GGAGAGCATCTGG----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------AGAGT---TCTTTACATTCTACTTGT---- ------CCTGCC---TTTATGACCCAACACAATGTCTTTGT Horse4_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------TGTTCTCACCACACACAAAAAAATGGTA-----ACTATGTGAGGTGATG GATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATA TATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA---------------------------------- ------------------------------------------- >Sus_scrofa TACTAACAA-AAA------------------------AAAATCATCTTGTAACTTAACTT------------------GC CAGTTCCCAGCTT---GAG--TTCTCTT-------------ATAGACAACAGTATTATGTTGTAACTATGCAATGTGATA GAGGTTCTATGTATGTCTACAATGTCAATCATCCTAAAATACATAAGGGCATCAAGTTAATATGTCATAGACATTAAATT TATATAATTT-TACACATGAACTGTA-CTTAATAG--CTAACCAGA---AAGGATTCTCAT---CAGCCACAGCAAAT-- TTTTGCAAAAGG---GCATTGGGTGT--ATATCA-GGACTCCC >Tursiops_truncatus TACTAAAG--AAA------------------------AAAATTATCTTGTAACTTAACTT------------------GC CAATTCCCAGCTT---AAGTGTTCCCAT-------------ATAGACAACAATATGGTACCAT----------------- ----------------------------------------------------------------------------AATT TATATAGTTT-TACATA----------TTTAATAA--TTAACAAAA---TAGAATTCTCAT---CAGCCATAGTGAAT-- TTGTGTAAAAGG---GCATTGTGTGT--ATTTCA-GGGGTCCC >Equus_caballus TACTAAAGATAAA------------------------GAAAATATCCCGTAACTTAGTTT------------------GC CAATTCGCAGCTT---AAGTGTTCTCAT-------------ATAGACAATAATATTGTACAATAATTACATAACGTGATA GAGGTGCTAAATACTGGTACAATGGTTATCATATTTCAATATACAAATATATCAAATTAACACATTGTACTCCTTAAATT TATATAATAT-TATATGTGAAATATA-TTTAATAA--------AAA---GAGAATTTTTGT---CAGCTATAGCAAAT-T TTATTTAATAGG---ATATTTAGTGT--ATTTCA---GGTCCT >Ceratotherium_simum CACTCAAGATAAA------------------------GAAAAGATCTTGTAACTTAGTTT------------------GC CAATTCCTAGCTT---AATAGTTCTCAT-------------ATAGACAGCAATAACGTACTAGAATTATCTAATGTGATA GAGGTGCTAAATGTTGCTACAATGGCAATCACATTACAATATACAAATATATCAAATTAAC---TTGTAAATCTTAAATT TATGTAATTT-TATATGTCAAATATA-TTTA------CCAAAAAAA---AAGAATTTTCCT---CAGCCATAGCAAAT-T TTATGCAATAGG---GCATTTAGTGT--ATTTCA---GGTCCT >Canis_familiaris TACTGAAGAT----------------------------AAAATATCTTGTAACTTAGATG------------------GC CAACTCCAAGCTT---AAGAAGTCTTAT---------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------CAGCCACAGAAAAT-- -TTCATAGTAGG---GCATTGAGTGA--ATTTCA-AGGGTCTC >Felis_catus TACTAAAGATAAAAA----------------------AAAAATTCCTTGTAACTTACATT------------------GC CAATTCCAAGCTT---AAGAAGTTTCAT---------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------CAGCCACAGAAAAT-- -TTTGTCATAGG---GCATTGGGTGT--CTTTCA-AGGGTCGC >Myotis_myotis TATTAAGGATAAA------------------------GAAAATATTGTATAACTTAGCTT------------------GC CAATTCCCAGTTT---ATAAGTTCCCAT---------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------TCACAGTAGCAAAT-T TTTTGGGATAGGAGTACATTCAATGT--ATTTCAAAGAA--AC >Rousettus_aegyptiacus TACTACAGATAAA------------------------GAAAATATCTCATAACTTAGTTT------------------GC CCGTTCCCAGTTT---AAGAATTCTCGT---------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------CGGCCATAGCAAATGT TTTTGTAACAGG---ACATTAAGTAT--ATTTCAGGGGGTCCC >Condylura_cristata CACTAAAGATCAATAACATAACTAATAAGTTAAAACTGAAAATATCATATAACTCAGTTT------------------GC TGATTCCAAA--T---ACGGGTTCTCAT---------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------GAGCCATAGTGAATTT TTATTTAT-------TTATTTACTTTTAATTTCA-GGGGCCCC >Scalopus_aquaticus CACTAAAGATCAA------------------------GAACATAACTCATGACTTAAAACTAAGAAAATCACAGTGAAAA TAACTCCAAATAT---ACATGTTCTCAT---------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------GAGCCATTGTGAAT-T TTTTA------------ATTTTTTTTTAATTTCA-GGGATCAC >Homo_sapiens TATTAAAGATACA------------------------TAAAATATCTTAAAATTTAGTTA------------------GC TAATTTCAAGCTT---AAGGGTTCTCAT---------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------CAGTCACAGCAAAT-T ATTTGTAATATG---ATATTTGTTAT--ATTTCA-AGAGTCCC Horse4_LTR >LTR21B2_EC -------------------------------------------------------------------------------- ---TGTGATATTGTGATTTATAATAAGAAATAT----------------------ATATTTGGTCTTCGTCCCCAGTTTC TGGCACAGAGCTCCT-AAAACCCTTGGAATTTCCTAAGTGATGAGAGTGATAAAGGTGTCTTTTGTTATGTTAATGAGGT GACTTTTGGAAAGCCNAATCACCTAAGGATGGGGGCTGGTTGCCAGTGGAGCCAACCATGTGATTAGAGGGTTGGAACTT TCAGTCCCACCCCCCTGACCTCCGGGGAGGGG---AGAGGGGCTGGAGGTTGAAT-CAATCGCCAATGGCCAATGATTTA ATCAATCATGCCTATGTAATGAAGCCTCCATAAAAACCCAAAAGGACGGGGTTCGGAGAGCTTCCGGGTTGGTGAACACG TGGAGATGCGGGGAGAGTGGCGCGCCCGGAGAGGGCATGGAAGCTCCGTGCCCTTTCCCACATACCTTGCCCTATGCATC TCTTCCATCTGGCTGTTCCTGAGTTATATCCTTTTATAATAAACCGGTGATCTAGTAAGTAAAATGTTTCTCTGAGTTCT GTGAGCNGCTCTAGCAAATTAATCGAACCCGAGGAGGAGGTCGTGGGAACCTCTGATTTATAGCCAGTCGGTCAGAAGTA CAGGTAACAACCTGGACTTGCGACTGGCGTCTGAAGTCCAAGGAGGGGGTCGTTGGAACCTCCAATCTGTAGCCGGTCGG TCAGAAGCACAGGTAACAACCTGGGCTTGCGACTGGCGTCTGAAGTG--GGGGTGGGGGG---CAGTCTTGTAGGACTGA ACCCTTAACCTGTGGAATCTGATGCT-ATCTCCGGGTAGATAGTGTCAGAATTGAGTTGAATTGTAGGACACCCAGCTGG TGTCC-GAGAATTGCTTGTTGG--GTGTG-GGGAAAC-----------------------------CCTCCCCCAC-ACA TTGGAATTGGGT--CCAGGAACCCA------------------------------------------------------- ------------------------ >Sus_scrofa AGGT--------------------TCCAGAGATCAATTAATTTCCAAT-TCACCAATTCTTAAATGTTGTGT---ATCAG ---TGTGATGATGTGATTTATAATAACACACAT----------------------ATATTTAGTCTTAGCCATTGGTTCC TGGCACATGGTTCC-CCAAATCCTTGGAATTACCTAAGTGTTAAGAGTGATAAGAGTGCCTTTTGTTATGTTTATGGA-T GATTT-------------CCACTTGAAGATAGGGGCTGGTTGCCAGTGGAAGCAATCCTGTGATTAAACAATCAAAAATA CTGGTCTCA-TCCCC-CAATTTGGGGGAGGGGAGAGAAGAAGCTGGAGATGGAGTTCAAT-GCCAGTAGTTGACAGTTTA ATCAATTATGCCTGTGGAATGAAGCCTCCATTA-AAACCCAAAAGGA-----TAGGGAAGCTCCTAGGTTGGTGAATCTG TGGAGGTGCTGGTAGGGTGAAGGTCCT-GAGGGTTCATGGAAGCTCTGTGCCCTTTTCC-CATGTCTTGCTTTATGCATC CCTTCCATCTGTCTGTTCCTGGATTATAGCCTTTTACAATAAACTGGTAACCTAATGAGTAATATGTTTCTCTGAGCTCT GTGAGCCTTTCTAGCAAATTAATCAAACCTAAGGAGGAAATCATGAGAACCTCTCATTTATAACAAGTCAGTCAGAAGTT CAGGTAACAATCTGGACTCTCAGTTGTCATCTTGAGT---TGAAGTGGGTTATAGGAACCTCCTGTTTGTAGCCAGTCAG TCAGAAGCACAGGTAAAAGCCTGTGTTTTATGTATGTGTGGTGGGAGG--ATGGCGGGGAGGATAATCTTTCAGGACCTA GTCCTTAACCTGTGGAATCTGACACT-ATCTCCAGGTAGATAGCATCAGAATTGATTTCAATTTTAGGACACCCAGCTGG TATCTGGAGAGTCACTTATAGGATGTATGAAGGTACCATTCTTTCCACCCCTGCCCCATCCCCTGACC-CCACCACCAAA CTGGAATTTGGTGGGCA-GAACACAAAATA---ATCAG---AT----AAAAAA--GTT-------ATCTTTTTCAAATTC TCATGATCCTCCCCTATCCTTGAT >Tursiops_truncatus AGGC--------------------TCCAGGGATAAATTTACTTCTAAAGTCATCAATTCTCAAATTTCGTGT---ATCAG ---TGTGATATTGCGATTTATAATAAGAAATAT----------------------GTATTTGGTCTTACCCTTGG-TTCC TGGATCACA-CTCC-CCAAATCCTTGAAGTTGCCTAAGCGCAAAGAGCAAGGAAGGTGTCTTCTGTTATGTTAAAAAA-T GACTTTTG--GA----AACCACTGAAAGATGGGGGCTGGTTGCCAGTGGAGTTAATCCAGTGATTAGAGGGTTGGAACTT TTGGTCCCA-CGCCC-ACCTCTGGGGAAGGG---AAAGGGAGCTGCAAATGGA---------------GTCAATAATTTA ATCAACTGTGCCTGTGTAATGAAGCCTCCATAA-AAACCCAAAGGAC------------------AGGTTGGAGAACATT TGAAGGTTCTGGGACAGTGGAGCTCCTGGAGACGGCATGGAAGCTCCTCGCCCTTT-CC-CATGCCTTGCCCTATACATC TCTTCAATCTG----------GGTTATGTCCTTTTACAATAAACTAGTGATCTAATCAGTGAAATGTTTCTCTGAGTTCT GTGAGCCTCTCAAGCAAAGTAGTCCAATCCAAGGAGGAAGTCGTGGGAACCTCTCATTTATAGCTGGTTGGTCAGAAGTA CAGGTAACAACCTGGACTCTCAGTCAGCATCCTGAGT---TGGAGGGCGTTACTGGAACTTCCAATTTGTGAACAGTCAG TCAAAAGCACAGGTAACAACCTATGTTGTGGGGCGGGGC-----------GGGGGGGGGGAGGCGGTCTCCTAGGCCTGA GCCCTTAACCTGTGGAATCTGACACTCTTCTCCAGGTAGACAGTGTCAAAATTGATTTGACTTGTAGGACACCCAGTCGG TGTCCAGAAAGTTGCTTGTTGGATGTGTGAGGGAAACATCGTCTCCACCCTTGCCCCATCCCCTGACCACCAACACCAAA TTGTAATTTCGTGCGTA-CAGCACAAAAGA---ATCAG---AC----AAAAAAT-GTT-------ATCTTTTTCAAATTC CCATGGTCCTCCCATATCCTGGAT >Equus_caballus AGAC--------------------TCCAGAGATAAATTAACTTCTAAAATCACCAGTCCTCAAATTTAG----------- ---TGCGACATTGTGATTTATAATAAGGAATATTTGGTCTTCCAAATAGTTGGAGGAATTTGGCCTTCTTCCAGGATTCC TGGCTCACAGCTCCTTAAAATCCTTGTAATTTCCTAAGTACTGAAAATGATAAAG--GTCTTTTGTTATGTTAATGAAGT GACTTTTG--AA----AAACACCAAAGGACAGGGGCTGGTTGCCAGTGGAGCCAACCATGTAATTAGAGGATTGAAA--- ------------------------------------GAGGGGCTAGAGATGGAGTTCTATCACCAAT-GTCAATGATTCA ATCAATCATGTCTATAAAATGAAGCCTCCATAA---ACCCAAAAGACAGAGTTCGGGGAGCTCCTGGTTTGGCGAACATG TGGAGATTCAGGAAGAGTGGCTCACCTGGAGAGAGTTTGGAAGCGCCACACCCTTTCCC-CATACCTTGCCCCATGCATC TCTTCCGTCTGGCAGTTCCT-GGTTATATAATTTTATAACAAACCAGTAATCTAGTAAGTAAAATATTTCTCTGAGTTTT GTGAAGCACTCTAGCAAATTAATAGAACCCCA---GGAGGTGGTGGAAACCTTTGATTTATAGCCATTCAGTCAGAAGCA CAGGTAACAACCTGGACTTGCAATTAGCACCTTGAGT---TGGAGGGAGTTCTTAGAACTGCCAATTTGTAGCCAGTTGG TTAGAAGCACAGGTAACAACCTGAGCTGGTGACTGGCATCTGAAGTTG--TGGTGAGGGGGGCCAGTCTTGCAGGACTGA GCCCTTAACCTGTGAAATCTGAAACT-GTCTC--AGAAGATAGTGTCAAAACGGAGTTGAATTGTAGGACACCCAGTTGA TGCCCAGAGAGTTCCTTGTTGGATATGTGGGGAACACCT------------------------------CCCCCCTCAAA TCAGAATTCTGTGGGCA-GAACGCAAAAGA---CTCAG---TC------AGAAT-GTA-------ATCTTTTTCAAATTC CCATAGTCCTCCCATCTCCCAGAC >Ceratotherium_simum AGGC--------------------TCCAGAGATAAATTAAGTTCTAAAATCACCAATTCTCAGATTTGGTAT---AATAG ---TGTGATATCATGATTTATCATAAGAAATAT----------------------AGATTTGGTCTTCCTCCAGGATTCC TAGCTCACAGCTCC-TAAAATCCTTGTGATTTCCTAAGTATTGAAAGTGATAAAG--GTCTTTTGTTATGTTAATGAGGT GACTTTTG--AA----ATACACCAAAGGACAGGGGCTGGTTGCCAGTGGAGCCAAGCATGTGATGAGAGGGTTGGAACTT TCAGTCCTGCTCCCC-AACCTCTGGGGAGGG---GAGAGAGGCTGGAGGTGGAGTTCATTTACCAATGGTCAATGGTTAG ATCAATGATGTCTATTTAATGAAGCCTCCACAA-AATCCAAAAGGACAAGGTTTGGAGAGCTCCTGGTCTGATGAACATG TGAAGATTCAGGAAGAGTGGCTCGCCTGGAGAGGGCGTGGAAGCTCCATACCGTTTCCC-CATACCTTGCCCTATGCATT TCTTCCGTCTGGCTGTTCCTGGGTTATATCGTCCTATAATAAACCAGTAATCTAGTAAGTAAAATATTTCTCTGAGTTCT GTGAGCCACTCTAGCAAATTAATCAAACCCGA---GGGGGTCATGGGAACCTCTGATTTATAGCCAGTCAGTCAGAAGTA CAGGTAACAACCTGGACTCGCGATTAGCATCTTCAAT---TGCAGGGAGTTGTTGGAACTGCCAATTTGTAATCAGCTGG TTAGAAGCACAGGTAACAACCTGGGCTGGGGACTGGAGTCTGATGTGGTGGGTGGGGAGGGGCCAGTATTGTAGGACTGA GCCCTTAACCTGTGGAATCTGAAGCT-ATCTCTGGGTAAATAGTGTGAAAATTGAGTCGAATTGTAGGACGCCCAGTTGG TGTCCAGTGAATTGCCTGTTGGATGTGTGTGGGAAA---------------------------------GCCCCTCCAAA TCGGAATTTGGTGGGCA-GAACACAAAAGA---ATCAG---AC-----AAAAAT-GTT-------ATCTTTTTCAAATTC CCATGGTCCTCCCATCTCCTGGAC >Canis_familiaris ACGCTAAATGGAGTTAGCCTCAATTCCAGAGATAAACTAAGTTCTGAAGTCATCAATTCTCAGATTTAGTGT---ATCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------AC-----AAAAAT-GTT----ACCATCTTTTTCAAGTTC CCATGGTC--CCTGCCTCCTGGCC >Felis_catus ATGC--------------------TCCAGAGGTAAATTAAGTGCTAAAGTCACCACTTCTCAAATTTAGTGT---ATCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------AC-----AAAAAT-GTTAAAAATGATCTATTTCAAGTTC CCATGCCCCTCTC-TCTCTTCACC >Manis_pentadactyla AGGC---------------------TCAGAGACAAATGAAGGTCTAATGTCACCAGTTTTCAAATTTA--GT---GTCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------AC-----AAAAAT-GTTAAAACCTATCTTTTTCAAGTTC CCACAGTCCTCCCATCTCCTGGAC >Myotis_myotis GGGC--------------------TCCAGAGATAA----AGCTCTAAAGTCACTGATTCTCAAATTTGGTGC---ATCAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------AC------AAAAT-GAT-------ATCT-TTTCAAATTC CCATGGTCCTCTGGTCTCCAGTAC >Rousettus_aegyptiacus AGGC--------------------TCCAGAGATAAACTAAGTCCTAAAGTCACCAATTCTCAAATTTAGTAC---ATCAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------AC------AAAAT-GAT-------ATTTTTTTCAA---- --ATGGTCCTCCCCTCTCCTGGAC >Condylura_cristata AGA---------------------TCCAGAGATAAATTAACTTCTAAAGCTACCAATTCTCAAATATAATGT---AACAG -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------AG------AAAAT-GAT-------ATCTTTTTCAAATTC TTACTGTCCCCCAATCTTTTGCTC >Sorex_araneus AGTC--------------------CTTAGGGAAAGCTTA--CTCTAAAGTCAAAAATTCTCAAATGAAAAAT---ATAAA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------GA------AAAATGGTT----ATTATCTTTTTCATATTA TCCTGGTATTCCTATCTTCTGATG >Homo_sapiens AGAC--------------------TCCAGAGATAAATTAAACTCTAAAG-CACCAATTCTCAAATGTAGTGT---ATCAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------ACAAAAAAAAAAT-GTTAAAAATTATCATTTGCAGACTT CTGTGGTTCTCCCA--TTCTGGAC Horse6_LINE >L1MA9_3END -------------------------------------------------------------------------------G GTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTA TACCTCAATAAAGCTGGAAAAA---------------------------------------------------------- ------------------------------ >Sus_scrofa TCATGATGCATTAATCTTATGAT--GAGT----AAAGCAAAAATGTTACAAGAGATTT---AAAGTAGGAATTAGA---- ---------------CATATTCAAATATTAAATCATTACGTTGACTACCTGAAACTAATAT----ATTATGTGTCAACTG TATCTCAATAAAATT--AATTAACTG---AAAT---AAAACACAAGTTGGA---ATGATAAAAGGAATAAGACAACTATC TAAACA---GCATAGCCCT-AGTCACTGAA >Bos_taurus TTAGAATGTGTTAGTCTCATAATTTGAGT----AAAGCAAAAATGTCAGAAAAGATTT---AAAATATAAGTTGGA---- ---------------TACATACAAATACTGAATCATCATGTTACATATCTGAAACTCATAT---------GTGTCAACTA TATTTCAATAAAATT--AATTAACTAGTTAAAT---AAAATATGAATTGGA---ATGCTAAAAGGAATAAGACAACTATC TAAAAA---GCATATCCCT-GTTCACTGAA >Equus_caballus TCAGTACGCATTAGTCTTA------GAGT----AAAGCAAAAATGTTAGAAAAGATTT---AAAATACAAGTTGGA---- ---------------TATATACAAATATTGAACCATTATATTGTACACCTGAAACTAATA-----------TGTCAACTG TGTCTCAATAAAATA--AATTAGTTAATTAATT---AAAATACAAGTTGGA---ATCCT-AAGGGAATAAGACAACTACC TAAATA---GCATAGTCCT-ATTCATCAAA >Tapirus_indicus TCAGTATACGTTAGTCTCATAATGAGAGT----AAAGCAAAAATATTAGAA-AGATTT---AAAAT--AAGTTGAA---- ---------------TATATACAAATATTAAATAATTACGTTGTACACCTGAAACTAATA-----------TGTCAACTG TGTCTCAATAAAATT--AATTAATTAATTAATT---AAAATACAAGTTGGA---ATCCTAAAGGGAATAAGACAACTATC TAAATA---GCATAGCCCT-GTTCATTAAA >Canis_familiaris CCAGAATGCATTAGTCTTATAATCAAAGT----AAAGCAAAAATGTTTGAAAAGATTT---AAAACACAAGTTGGA---- -------------------------------------------------------------------------------- ------------------------------------------------------ATCCTAAAAGGAATAAAACAACTGTC TAAATA---ACATAGCCCTGGCTTATCAAA >Felis_catus TCAGAACACATTAGTTTTATAATCAGAGT----AAAGCAAAAAGGTTTGAAAAGATGT---AAAACACAAGTGGGA---- -------------------------------------------------------------------------------- ------------------------------------------------------ATCCTAAAGGGAACAAAACAACTGTC AAAATC---ATATAGCCCTGGTTCATCAAA >Manis_pentadactyla TCAATATGCATTAGTCTTGCAATCACAGTAAAAAAAGCAAAAATATTAGAAAATATTT---AAAATACAAGTTGGA---- -------------------------------------------------------------------------------- ------------------------------------------------------ATCCTAAAGGGAATAAAACAACTATC TAAACA---ACACAGCCCT-GATCATCAAA >Myotis_myotis TCAGTATGTATTAGTCTTATAATCAGAGT----AAAGTAAAAATGTTAGAAAATATTT---AAAATACAAGTTGAA---- -------------------------------------------------------------------------------- ------------------------------------------------------ACCCTAAAGGGAATACAACAACTATC TAAATAAATAATTAACTCT-ATTCATAAAA >Rousettus_aegyptiacus TCAATATGCATTGGTCTTATAATCAGCAC----AAAGCAAATATGTTTAAAAGGATTT---AAAATACAAGTTGGA---- -------------------------------------------------------------------------------- ------------------------------------------------------CTCCTAAAGGGAACAA---AACTATC TAAATA---ACATA-CCCT-GTTCATCAAA >Condylura_cristata TC-TTATGTATGAGTCTTATAATCAGAAT----AAAACAAAAATATTGAAAAAAATAA---AATACAGTGGTATGT---- -------------------------------------------------------------------------------- ------------------------------------------------------ATCCTGAAGCG--CATAATAACTATT TAAGTA---GGATAGCCCT-TTTCAACAAA >Solenodon_paradoxus TCAATATACATTAGTTTTATAATAAGAAT----AAGACAAACATGTTAGAAA----AA---AATGTACTAGTTGGA---- -------------------------------------------------------------------------------- ------------------------------------------------------ATCCTCTAGGGAATAAGACA-----C TAAATA---AC--AGTCTT-ATTCAACAAA >Homo_sapiens TCAATATAAATTAGCCTTAAAATCACAGA----AAAGTAAAAAAGTTAGAAGAAATTC---AAA-TACAAGTTGGA---- -------------------------------------------------------------------------------- ------------------------------------------------------ATCCTAAAAGGAATGAGACAACTAT- ---GTA---ACATAGTCCT-GTTCATCAAA Horse6_LTR >LTR76_EC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------TGTAGAACCAAACTAAAA TGGAGTCACTTATGTCAGGGACAAAATGGAGATGGTCAACGCAGGCGCATAAAGGAAACTTAACCTAACCTTACAGGAAT TTACAGCTCTTCTCAGAAATCAGCAGAGGACACCAGCCAATCCCCAAACNCCAAGTCTGTTCACGCCATCTC-------T GGACTTCCTTGTTCCCCTGACTCAGCTACCCTGATCCAAATAAGAAAGAAGACCACTAGGCAACCAATCAGCTGAA---- ------AAAGCCAAATAACTTCCACATTTATCCCATAAAAATCCCTTAGTCTGTGAGCAACTCNGAACTCATTGCTCCCG TAGCCTTGAGTTTCCTGGCTTGCAGGTCGAAAGCCTTGCAATAAACTCATCTTTCTGCTTTGTTTTATTCAGTGTGCAGA GTTTGGTTTTTGACA----------------------------------------------------------------- >Sus_scrofa TTATGA-----------------------------------GAGAAT--------------------------------- -------------------------------------------------------------------------------- -----------------------------------ATACCATGATATGATAG---AG----------AACCAAACTAAAC TGGAGACATTTATGTCAGAAACAACGTGGAGATGGTCAATGTGGGTGCATAATGGAAACTTAACCTAACCCTACAAGAAC TTA-----------------CAGCAGAGTACTCCAGCTACTCCCTGAATGCCAGGTGTGTTCATGCTATCTCCAGACTCC AGACTTCCTTGTTTTCCTGACTCAGCTACCCTGATCCAAATAAGGAAGAAAACCACCAGGCAACCAATTGGATAAA---- ------AAAGCCCAATGTCTTCTCCATTTATCCCATGAAAACCCCCAAATCTGTGAGCAACTTGGAATTCA--------- -----TTGAGTTTCCTGGATAGCTGATGAAA-GCTTT---------GCATCTTTTTGCTTCATTTTATTCAGTATGCAGA GTTTGGTTTTTGACA---TG-TG---GAAAGAACACCAAGGTAAGAGCCAGAAAACCTTGC----CTCCAGTTCAGTCTT >Tursiops_truncatus TCATGAAGTCTTCACTTAAATATTCAGCAAAGC-TGATGAAGAGAAC--------------------------------- -------------------------------------------------------------------------------- -----------------------------------GTACCATGATATGATGA---AGTA---TGTAGAGCCAAATT--AG TGGAGTCACTTATGTCAGAGACAGAATGGAGATGGTCAGTGCAGGAGCATAATGGAACCTTAACCTAACCATACAGGAAC TTACAACTCTTCTCAGAAATCAGCAGAGCAAGACAGCCACTCCCCAAATGCCATGTGTGTTCATGCTATCTC-------C AGACTTCCTTGTTCTCCCAACTCAAGAGTCCCTAATCCAATAGGGAAGAAGACCTCTAGGCAACCAATAATCTGAAAAAA AACCCCAAAACTAAATGACTTCTACGTTTACTGCACAAAAATCCCCTAGTCTGTGAGTAACTTGGAACTCATTGCTCCCA TCGTCTTGAGTTTCCTGGCTCGCTGATGGAA-GCTTTGCAATAAACTCATCTTTTTCCTTTGTTTTATTCAGTGTGCAGA GCTTGGTTTTTGACA---CGAAG---AAAAGAGTCCTGAGTTGGGAGCCAGAAAACCTAGT-----CTCAGTCTAGTCTT >Equus_caballus TCATGAAGTGTTCAGTTAACTATTTAGAAAAACTTGAAGAAGGGGAG--------------------------------- -------------------------------------------------------------------------------- -----------------------------------GTACCATAATGTGATGA---AGTA---TGTAGGACCAAACTAAAA TAGAACCACTTA-GTCAGGGACAAAATGGAGACATTTAATGCAGGTACATAAAGAAA--TTAACCTAAGCTCACAGGAAT TAACATTTTTTCTCATAAATCAGCAGAGGACACCAGCCAATCCCCAAAGGCCGGGTCTGTTCCTTGCATCTC-------T GGGCTTTCTTGTTCCCCTGACTCAGCTACCCTGATCCAAACAAGGAAGAAGACCACTAGGCAACCAATCAGCTGGA---- ------AAAGCCAAATCACTTCCCCATTTACACCATAAAAATTCTCTAGTCCGTGAGCAACTCGGAACTCATTGCTTTCC TAGCCTTGAGTTTCCTGGCTTGCTGGTGGAAAGCCTTGCAATAAACTCATCTTTCTGCTTTGTTTTACTCAGTGTGCAGA GTTTGGCTTCTGACA---AG-TA---TTAAGAGCACTGAGTTAAGAATCAGGAGACCTTGC----CTTCAGTACAGGCTT >Ceratotherium_simum TCACGAAGTCCTCACTTAAGTACTTAGCAAAACTTGAAGAAGGGAAG--------------------------------- -------------------------------------------------------------------------------- -----------------------------------GTACCATAATGTGATGA---AGTA---CATAGGACCAAACTAAAA CAGAGTCACTTA-GTCAGGGACAAAAGGGAGACAGTCAATGCAGGTGCATAAAGAAAACTTAACCTAATCTCACAGGAAT TCACAACTTTTCTCAGAAATCAGCAGAGGACACCAGGCAATCCCCAAATGCCAGGTCTGTTCATGCCATCTC-------C AGACTTCCTTGTTCTCCTGACTCAGCTACCCTGATCCAAAC---GAGGAAGACTTCTAGGCAACCAATCAGCTGAA---- ------AAAGCCAAATAACTTCCCCGTTTACCCCATAAAAATCCTTTAGTCCATGAGCTACTCGGAACTCATTGCTCCCA TAGCTTTGAATGCCCTGGCTTGCTGGTCGAAAGCCATGTAATAAACTCATCTTTCTGCTTTGTTTTACTCAGTGTGCAGA GTTTGGTTTTTGACA---AA-TA---TTAAGAGCACTGAATTAGGAGGCAGGAAATCTGGC----CTCGAGTACAGTCTT >Canis_familiaris TCATGAAATCCTCACTTAAATATTCAATAGAACCTGAAGAAGATAAG--------------------------------- -------------------------------------------------------------------------------- -----------------------------------GTACCATGATGTGATGA---AGTA--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------GAAGGAGCACTAAGTTAGGAGTCAGGAGG------------CTGGTATAATCTT >Felis_catus TCATGAAATCCTCACTTAAATATTCAACAAAACTTGAAGAAGTTAAG--------------------------------- -------------------------------------------------------------------------------- -----------------------------------GTATCAGGATATGATGA---AGTA--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------GAAGGAGCACTGAGTTAGGAG-------------------TCCAGTACAGTCTT >Manis_javanica CCATGAAGTCCTCACTTAAATA-TCAGCAACCCTTGAGGAGGAGAAG--------------------------------- -------------------------------------------------------------------------------- -----------------------------------GTAGCACAGTGTGATAA---AGTA--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------TGAAGAGTACTGAGTTAGGAGTCAGAAAATCTGGCTTCTTTCTGGTGAAGTCTT >Myotis_myotis TCATGAATTCCTCACTTAACTATTCAGCAAAACTTGAAGAAGAGATG--------------------------------- -------------------------------------------------------------------------------- -----------------------------------GTACCATGATGTGATAG---AGCA--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------GGAAGAGCCCTGAGTTGGGA-TCAGGAGAGGTGGT----CTCCAGTATAGTCCT >Rousettus_aegyptiacus TCGTGAAGTCTTCAGTTAAATATTCAGCAAAACCTGGAGAAGAGAAG--------------------------------- -------------------------------------------------------------------------------- -----------------------------------GTATCATGATGTGAT-----AGTA--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------GGATGAGCACTAAACTGAGAGTTAGGAAACATGGC----CTCCAGTGCAGTCTT >Condylura_cristata TCACAAAGTTCTCACAAAAATGATCAGGGAACCTTGATGGAGAGAAG--------------------------------- -------------------------------------------------------------------------------- -----------------------------------GTACCAAGATATGCGAA---AGCA--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------GAAAGAGCACTGGGTTAGGAGTCAGGAA----------------------TCAG >Erinaceus_europaeus TCATAAAATTTTCACTTAAATATTCAGTAAA-TTTGAATAAAAGAAGTAAGGAGAGCAGGAAGGTGGTTCAGCTGGAGAG GGAATACTTTGCATGTCCCTGGGTTCAAGATCTGACGCTATATGCAATGGCAAAGCCCTGCTCTAGTCTCTGTCTTTTTC TGTCTCCTGTCTGTCTGTCTCTCAATCTAAAGGCAGTACCATCATATGATAA---AGTA--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------GGAAGAGTACTGTGCTAGGTATCAGAAAACCTGAT----CTCAGATACAGGCTT >Homo_sapiens TCACAAAGTTCTCACTTAACTATTCAGGAAAACTTAAACAAGAAGAG--------------------------------- -------------------------------------------------------------------------------- -----------------------------------GCACCACAATGTGATGA---GTTG--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------GAAAGAACACTGAGCTGGGAGTCAGGAAATCTAGG----CTCTAGCA-AGTATT Horse9_LTR >ERV1-4N-EC_LTR -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------TGAAGGGGTT CAGAACAGGCCTCCCCAAGATGTGCCACTTTGGCATGTGGAATA-TTTTGAGCTAAAGGCAATCNAGACCCTGTGGGCTC AAGAGAAAC-TTTTACCTCTCCCTT---------AAAGAATTTAAATTGGGGGCCTTGCCCATAATAAGAGTTATTACCA GAAATAAATTTTTAT--------GACCTATCTGTATGGCAGGGCAAACCTCTAATTACTGAACATCTGCTCTTCTTATCA TCCTGTGAATTACCCTC--CTCCCCTCTGAAGCCTCAGGCCCCTATCCCAT--TCCTTAGCTCAAGATGGCATATATACC TCATTTTACCTTTTTGTCTCTGAACCTCTCATGTATGTGGGGTCTCTGACTCTCTCAT-GTATGTGGGGTTCCCGTATNT ATGNAATTAAATTTGATTTTCTCCTGTTAATCTGTCTCATGTCAATTTAATTCTTAGACC----------AGCCAGAAGA ACCTAGAAGGGTAGA--GGAAAATTTCTTCCTCCCCCACA---------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------- >Equus_caballus AATTATTAAAATTATAATCT-AAT---TGAAGCTA--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------ATTTTTAA----AACCTGCCCTCTA---CCAGT---TGAGAGGGAG CAGAATATACCA-CCCAAAATGCAGCACTTTGGCATATGGATTGCTTTTTAGCCGAAGGCAATTAAGACCCAGCAGACTC AGGAAAAGCTTTTTACCTCTCCCTTAACTGCCTAAAGGAATTTAGGTAGGGAGCCTGCACCATGAAGAGAGCTATTGCTA GAGATAACTTTTTATATCAGAAAGACTTGTCTGCATGGCACGGCAAGCATTTGTTTATCAAACATTTG---TTCTCGTCT TCCTGTGAACTGTCTTT--CTCCCGTTTGATGCCCCAGACCCCTAGCC-CTTCTCCTTAGCTCAGGATGGTATAGAAGCC TCAACTGCCAACT----------------------------GCCTTTGAATCTCACAATTTTTATGGGGCTGCTGTACAT GCGAAATTAAATTTCTTTTTCTCCTGTTAATCTGTCTAATGTCAACTTAATTATTAGACC----------ATCCG-TGGA ACCTAGAAGGAAAGAAGGGAAAAGTTTTTCCTTCTACACAGTCAT---ACATT---CACATATTCAT------------- ---TCATTCATTCATT---CATTGTAATGTTGGC---------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------TGAGCACCATATA >Ceratotherium_simum AA-----AAAATTATAATCT-AAT---TGAAGCTA--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------ATTTTTAA----AACCTGCCTTCTA---C-AGT---TAAGGGGAAG CAGAATACACCA-CCCAAAATGTGCCACTTTGGCATGTGGATTG-TGTTGTGCTGAAGCTAATTAAGACCCAGCAGACTC AGGAAAAGCTTTTTACCTCTCCCTTAACTATCTAAAGGAATATAGATAGCGGGCCTATACCAGGAAGAGAGCTATTCCCA GAGATAACTTTTTATGTCAGAAAGACTTATATACATGGCATGGCAAGCATTTGTTTACCAAACATTTGCTCTTCTCATCT TCCTGTGAATTGTCTTC--CTCCCCCTTGAGGTCCCACATGCCTCCCCCCTTCTCCTTAACTCAAGATGGTGTATAAGCC TCAACTGCCAACT----------------------------GCCTTTGAGTCTCATAA-TTTTATGGGGCTGCTGTACAT ACGAAATTAAATTTATTTTTCCCCTGTTAATCTGTCTAATATCAACTTAATTATTAGACC----------AGGCA-AAGA ACCTAGAAGGAAAGAAGGGAAAAGTTTTCCCTCCTACATAGTCAT---A-ATT---CACTTACCCAT------------- ---TCATTCATTCATT---CGATGTAGTGTTGGC---------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------TGAGCACCATATA >Myotis_myotis ATTCATTAAAATTACAATCT-AAT---TGAAGCTA--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------ATGTTTAA----AACTTGCCTTCTG---CAGGT---TGAGGGGGAA CAGAACACACCA-CCCATGATGTGTCACTTTGGCAGGTGGCTTT-TTTTGAGCTGAAGGCACTCAACACCCAGCAGATTC AGGGAAATC-TTTAGCATTTCCTGTCACTATCTAAAAGACTTTAGGAAGGGGGCCTGTCCCAGGA--AGAGCTAGTACCA GAGATAAC--TTTATATCAGAAAGACTAATCTGCATGACAGGGCAAAATTTTGTTCATCAAATA---GCTCTTCTCATAT TTCTGTGAATTGTCTTCCTCTCTCTCTTGAAGACCCAGGCCCC-ACCCCCTTCTCTTTAGCTCAGGATGATATGTAAGTC TCAATTACCCACT----------------------------GCCTTTCAGTCTCATAT-TTTTATGGGGCTTCCCTACAT ATGACATTAAATTTGTTTTAATCCTATTAATTTGTCTTACATCAATTCAATGATAAAACC----------AGCCA-ATGA ACCTAGAAGAGAGGA-----AAAATTATTTCCCCTACTCAGTTAT---CCATT---CACCCATTCAT------------- ---TCATTCATTCATT---CCACTTACTACTATC---------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------TGAGCACCAT-TA >Rousettus_aegyptiacus AATTATTAAAATTATAACCT-AAT---GGAAGCTA--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------CTTTTTGA----CACCTGCCTTTTG---CCAGT---TGAGGGAGGA GAGAACACACCT-CCCAAAACGTGCTTCTCTGGCAGGTGGAGTG-TTCTGAGCTAAAGGGAAGCGGCGCCCAG-AGACTT -GGGAAAGCTGTCTGC-TTTCTGGTGACGGCCCAAAGGAGTTCAGACAGAGC-CCTGGACCAGGG--AGAGCTATTAGCA GAGATCACGTTTTACATCAGGAACATTTATCTGCCCAGCGGGGCAAACATTTGTTCCCCAAATATTCACTCTCCTCATCT TCCTGTGGATCGTCTCC--CACACCTCTGACGACCCAGACCCCTACCTGCTTTTCCTTGGCTCAAGGTGGCAGGTAAGCC T---------ACC----------------------------GCCTTGGAGTCTCACATTTTTTGTGGGGCTGCTGTACGT AAGAAATTAAATTCATTCTTCTCACGGTAATCTATCTTATGTCAATTTGATTGTTAAACCAGGTGTTTCTAGCCA-AAGA ATCTAGAAAGGAAGA-----AAAGCTTTCCCCCCTGCAGAGT--------------CATTCATTCAT------------- ---TCATTCATTCATT---CCATTTGATGTTGGC---------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------TGAGCACGACGTA >Canis_familiaris AATTATTAA-ATCAGAATCTAAATCTCTGAAACTA--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------ATTTTTAA----AACCTACCATCTG---CCAAT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------CATGTATTCAT------------- ---GCCTTCATTTGTT---CCCTTTAATGTGGAC---------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------TGAGCACCACAGA >Felis_catus AATGATTAA-ATCAGAATGT-AAC---TGAAGCTAATTTTTATTTTATTTTATTGAAAGAATTTTTTTAATGTTTATTTT TGAGGGAGAGAAAGGGAGAGAGAGGGAGAGAGAGAGAGGGAGAGAGGGGCAGAGAGACAGGGAGACTCAGAATCCAAGCT CTGAGCTGTCAGCACAGAAACTAACATGGGGTTTGAACCCACGAACCGTGAGATCATGACCTGAGCCAAAGTTGGACACT TAATCGACTGAGCCACCCAGGTGCCCCAAAGCTGATTTTTAA----AACCTGCCATCTG---CTAAT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------CATG-AGTCGC------------- ---CTAGTCATTCATTTGTCCCTTTCACGTAGAC---------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------TGAGTACCATATA >Manis_pentadactyla AATTATTAATATTATAATCT-AAT---TGAAGCTG--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------ATGTTTAA----AACCTTTCACCTG---TCAGT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------CCTG-ACTCAC------------- ---TTACTCATTCATC---CCCTTTAATGTTGAC---------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------TGAGCCCTACAGA >Sus_scrofa AATTATTAAAATTGTAATGT-GAT---TGAAGCTA--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------GTTTTTAA----AATCTACCATCTG---CCAGT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------CACACATTCAT------------- ---TCATTCATTCATT---CATTATAATGTTGAC---------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------TGAGCACCATATA >Tursiops_truncatus AATTATTAAAATTATAATGT-AAT---TGAAGCTA--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------ATTTTTAA----AACCTACCATCTG---CCATT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------CATTCATTCAT------------- ---TTGTTCATTCATC---CCATATAATGTTGAC---------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------TGAGCACCATATA >Condylura_cristata TATTATGAAAACCCCAATCT-AAT---TGAAACTC--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------CATTTTCT----ACTCTGTC-TCTG---CCAAC------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------CAATCATTCAA------------- ---TGGCTCATGCATT---CCACTATCTGTT------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------CACAGA >Sorex_araneus AAGTGCTAAAAATGA---CT-AAC---TGGAGCTA--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------AAACCGGCCCTTG---CTAGT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------TGTGCATTCACCCTTATTTTTGTT TAATTATTCATTCATT---CCAGTTAATATGACCAGCATATGGAAGCTGGAGTGATAGAACAGCAAGTAGGGCGTTTGCC TTGCATGCGGCCGACCCGGGTTCGATTCCCAGCATCCCATATGGTCCCCTGAGCACCGCCAGGGGTGATTCCTGAGTGCA GAGCCAGGAGTGACCCCTGTGCGTTGCCAGGTGTGACCTAAAAAGAAAAAAAAATATGACCAGCATATG >Cavia_porcellus AATTAGTAAAACTGTAATCT-AAT---TGAAACTA--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------ATTTTTAATTTAATTTTGTCCTTTA---GCAGT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------CACATAAACTC------------- -ATTCATACATGCATT---CAAACTAATGTTGAC---------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------TCAGCAGCATAAA Horse10_LINE >L1MA9_3END -------------------------------------------------------------------------------- ---------------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAG----------- ------------------------------------------------------------------- >Sus_scrofa CTTTCCAGGAACTGGGGGAGAAAGTGGGGAC--CCCCCATGATTAGAGTCAGCAATGTGAAGACATCAC---T---G-TT TTCAGTTTTC------CCCCCCAGTTT---TGAGATA-AACTGACATACAGCA-CT----------------TATTATTT TTAATTCTT---AAACT--GAGAATAAGTGATAATCCACTTTTCATGTTCCAC-T--AAAAA-CATC >Tursiops_truncatus CTTTCAAGGAATTGTGGTAGAAAGTGGGGACCTCCCCCATGATTACAGTCAGTAATGTTAAGAAATCAC---T---A-TT TTCAGTTCTT------TCCCCAAGTATTATTGAGATA-AATTGACATATATCA-CTG---------------TATTATTT TTAGTTTTT---AAACT-GGAGAATAAGTGTTAA-----TTTTTATGTCCACC-T--AAAAAACATT >Equus_caballus CTTTCAAGGAATTGTGGTAGAAAGTGGGGACCTCCTCCATGATTATAGTTAATAACGTTAAGAAATCAC---T--CA-TT TTCACTTCCT---TTTTTTCCCAGTTTTACTGAAATATAGTTGACATATAGCA-TTG---------------TACTATTT TCAGTTCTT---AAACT-GAAAAATAAGTGATAA-CCAATTTTAATTCTCTAC-C--GAAAATCCTT >Ceratotherium_simum CTTTCAAGGAATTGGGGTAGAAAGTGGGGACCTCTCCTATAACTATAGTTAATAATGTTAAGAAATCAC---T------- ---AGTTCTT---GCTTTTCCCAGTTTTATTGAAATATAATTGACATACAGCA-CTG---------------TATTATTT TCAGTTCTT---AAATT-GAAAAATAAGTGTTCA-CCAATTTTAATGCTCTAC-T--AAAAAGCCTT >Canis_familiaris CTTTTAAGAAGCTGTAGTGGAAAGTAGGACCCTCCCCCATAATT--AGTCAATAATGTTAAGAATTCAC---T-TCA-CC TTCAGTTCTC---------------------------------------------------------------------- ------------AGGTT-GGGAAATGAGTGATAA-CCAAGTTGA--GCCCTAT-T--AAAAATCACC >Felis_catus CTTTCAAGGGGCTGTGGTGGAAAGCAGGGCCCTCCCCCATCATTATAGTCAGCAATGTTAACAAGTCAC---T-CCA-TT TCCAGTTATT---------------------------------------------------------------------- ------------AAACTGGGAAAATGAGTGATAA-CCAATTTTAAGGCCCTAC-T--ACAAATCATT >Phataginus_tricuspis CTTTCAAGGAATTGTGGTAG-AAGTGGGACCTG------TTATTGTAGTCAACAATGTTAGGAAATCAC---A-CTA-TT TTTAGTTCTT---------------------------------------------------------------------- ------------ATGTT-GGAAAATAGGTGATAA-CTAACTTTAAGGCCCTAT-T--AAAAATCACT >Myotis_myotis CTTTCAAGGAATTGTGGTAGAAAGAGGGGAACTCCTTCATGACTATAGTCAATAATGTTAAGAAATTAC---T-CCA-TT TTTAGTTCTT---------------------------------------------------------------------- ------------AAATT-GGAAAATAAGTGATAA-CCAACTTTAA-ACACCAA-T--GAAAATCATT >Rousettus_aegyptiacus CTTTTCAGG------------AAGAAGGGAACTCCCCCACAACCGTTGTCAATAATGTTAAGAAATCAC---T-CTA-TT TTTAGTTCTT---------------------------------------------------------------------- ------------AAATA-GGAAAATAAGTGACCA-CCAA-TTTAAGGCCCTACTTATTAAAATCATC >Condylura_cristata CTTTCAAGGAACTGTGGTAG-AAGTGGGGACAGCCTGCAAAATTATAGTGAATAACATTAAAAAAAAAA---TACTA-CT TCCAGTTTTT---------------------------------------------------------------------- ------------AAATT-GGAAAACAAGTGTTAA-TGAATATTAATGTCCTAT-T--AAAAATCAGT >Erinaceus_europaeus -----------------------------------------ATTATAGTCATTAGTATTAAGAAAATAC---T-CTATTT TTTAGTTCTT---------------------------------------------------------------------- ------------AAGTT-AGAAATTAGGTGATAA-CCAATATTAAAGCCCAAAGT--AAAAATCATT >Homo_sapiens CTTTAAAGAAATTGTGGTACAAAGTGGAGACCTCTCCCATGATTATAGTCAATAATGTTAAGAAATCAC---T-TTA-TT TTCAAATCTT---------------------------------------------------------------------- ------------ACATT-AGAAAAGAAGTAAGAA-ACAAGTTTAATGCCTTAC-T---AAAATCATT Horse10_LTR >LTR21B1_EC ------------------------------------------------------------------------------TG GTACCCAATTCC--AA-----------TGTGTGTGTGGA-------GTTTTTCCCCACACCACCAAGCAATTCTCCGACA CCAGCTGGGTGTCCTACAATTCAACTCAATTCTGA-------CACTATCTACCTGGAGATAGCATCAGATCCCACAGGTT AAGGGCTCAGTCCTACAAGACCTGTCC-------CCACCCCCCACTTCAGACGCCAATCGCAAGTCCAGGTTGTCACCTG TGCTTCTGACCGACTGGCTATAGATCGGAGGTTCCAACGACCCCCTCCTTGGGTTCGATTAATTTGCTAGAGCGGCTCAC AGAACTCAGAGAAACATTTTACTTACTAGATTACCGGTTTATT-ATAAAAGGATATAACTCAGGAACAGCCAGATGGAAG AGATGCATAGGGCAAGGTATGTGGGAAGGGGCGCAGAGCTTCCATGCCCTCTCCGGGCGCGCCACTCTCCCCGAATC-TC CACGTGTTCACCAACCCGGAAGCTCTCCGAACCCCGTCCTTTTGGGTTTTTATGGAGGCTTCATTACATAGGCA------ TGATTGATTAAATCATTGGCCATTGG----TGATTGATCTCAACCTCCAGCCCCTCTCCCCTCCCCGGAGGTCGGG---- -------------------GTGGGACTGAAAGTTCCAAC-CCTCTAATCACATGGTTGGTTCCCC-TGGCAACCAGCCCC CATCCTTAGGTGCTTTCCAAAAGTCACCTCATTAACATAACAAAAGACACCTTTATCGCTCTCATCACTTAGGAAATTCC AAGGGTTTTAGGAGCTCTGTGCCAGAAACGGA-GCAAAGACCAAA--------TATATATTTCTTATTATAAATCACAAT ATCACA--------------------------------------------------------------------- >Equus_caballus TGCACGGTG---------TTTCACCAGGTTCTTCTTTCAAGTTCAACGCCGGTGGATAA---TGGT---TAAAAGTTCTG GTCACAAATTAC--GA------AGTGTTGTGCATGT--------------TTCCCCACACCAACAAGCAATTCTCTGACA CCAGCTGTGTGTCCTACAATTTAATTCAATTCCGA-------CACTATCTACCTGGAGAGAGCATCAGACCCCACAGGTT AAGGGCTCAGTCCCACAAGAATGCCA--------CCTCCCCCCAGTTCAGAGGCCGGTCTCAAGTCCAG---------TC TGCTTCTGACCAGCCGACAAC------------------CCCCTCTCCTTGGGTTTCATTAATTTGCTAGAGGGACTCAC AGAACTCAGAGAAACATTTTGCTTACTAAATTACCCACTTATT-ATAAAGGGATATAACTTAGGAACAGCCAGATGGAAG CGATGCCTAAGGCAAGGTGTG-GGGAAAGAAGGCAGAGCTTCCGCGCCCTCTCCAGG-CCACCACTCTCCCCAGATC-TC CATGTGTTCACCAACTCAGATCCTCTCCAAACCCTGTCCTTTTGGTTTTTTATAGAGGTTTCATTATATAGGCA------ CGATTGATTACATCACAGGCCATTGG----GGACTGAAATCAATCTCCAGCCCCTCTCCCTTCCTCTGAGGTTGGAAGTT GAGGGTAAGCGGCAGGAGAGTGGAACTGAAAGTTCCAAC-CCTCTAATCACACAGCTGGCTTCAT-TGACAAGCAGCCCC AGTCTTTAGGTGCTTTCCAAAAGTCACCTCTTTAACGTAACAAAAGATACCTTTGTTGCTCTCATCACTTAGGAAACTCC AAGGGTTTTAGGAGCTATGTGCTGCAAACAGAGACTTAGACCAAA--------TATATATTTCTTATTATAAATCACAAT ATCACA---TG----GT---AAAG-AAAAGAAAAAAAGAAC----AGCAGAGAAAAAGGCCTTCCCTGGCTTCGG >Ceratotherium_simum TTCATGGTG---------TTTCACCAGGTTATTCTTTCAAGTTCCATGCAGATGAATGA---CGGT---TACAGGTTCTG GTCACCAATTCT--GACATGTAGGTGTTGTGTGTGTAGG----GGGGTGGTTCTCCACACTGACAAGCAACTCTCCGACA CAA---GGGTGCCCTACGATTTCACTCAATTCTGA-------CACTATCTACTTTGAGATAGCGTCAGATCCCAGACGTT AAGGGTTCAGCCCTACAAGATCGCCAC-------CTCCCCTCTTCTTAAGACCCCAGTCGCAAGTCCAG----------- TGCTTCCAATCAACCAGCTGTAGATTGGAGGTTCCAACAACCCCCTCCTTGGGTTCAATTAATTTGCTAGAGGGACTCAC AGAACTCAGAGAAACATTTTACTTACTAAATTACCCATTTATT-ATAACAAGACGTAACTCAGGAACAGCCAGATGGAAG AGATGCAGAGGGCAAAGTACA-GGGAAAGAATGCAGAGCTTCCATGCCCTCTCCAGG-GCACCATTCTCCCCAAATC-TC CACGTGTTCATCAACTCAGAACCTCTCCAAACCATGTCCTTTTGGGTTTTTATAGAGGCTTTATTACATAGGCA------ CAATTGATTATATCATCGGCCACTGG----TGACCGAACTCAATCTCCAGCCCCTCTCCCCTCCCTTGAGGTCAGGGTTG GGGGTGAGAGGATGGGGGCGTGGAACTGAAAGTTTCAAC-CCTCTAATCACACAGTTGGCTTCAC-TGGCAACCAGCCC- -GTCTTTAGGTGCTTTCCAAAAGTCACCTCTTTAACATAACAAAAGACACCTTTGTTGCTCTCATCACTTAGGAAATTCC AAGGGTTTTAGGAGCTCTGTGCTGCAAACAGGGACTCAGACCAAA--------TATATATTTCTTATTATAAATCACAAT ATCACA---TG----GT---AAAGAAAAGGAAAAAAAAAAC----AGCAGA-AAAAAGGCTTTCCCTGGCTTCAG >Condylura_cristata TTCAC---------------------------------------------------CAA---TGA----AGCTGTTTCCA GCCACCAATTCT--AA-------------TGTATGGAGG----------GTTCCCCACACTAAAAAGCAAGTCTTCCCTA TCA-CACTGAATCCAAAAATTTGATTCAATTCTGCGTCTGGTAATTCTTTACTCAGAGATAACACCAGATCCCACAGACT GAGGGTTTGGTTCCACAAGACTGCCTC----GCCCTGACCCCCACTTCAGGGG-CAGT--CAATCCCAGGTTGCAATCTG TGCTTCTGACATTCCTGCCACACACAGGAGGTTCCAGTGACCTCCTCCTTCAATTCGATCAATTTACTAGAG-------C AGAACTCAGAGAAACATTTCACTTACTAGATCGCTGGCTTTTTAAGAAAAGGATGTAACTCAGGAACA-CCAGATGTAAG AGACACACA-GTCAAGGTATG-GGGATCTGGCTCAGAGTTTCCAT-CCTACTCCAGG-CAGCTGCTCTTGCTGAATC-TC CACAAGTTCACCAACCTAGCAGCAGTCTG--CCATCTGTTCTCATGTCTTTATAGAGGCGTCTTTACATAGGTG------ CTGCTGATTAAATCATTGACCACAGG----TGACAGAACTCAGT---CATCTTCTGTTTCCTCCA-GAAAGTCAGA---- --------------TAGGGGTGGGAGGGGAAGTGCCAAT-TGTCTTATCA----------------CTGCAACCACCCAG ACTCCC----AGTTTTCCAAAAGTAACCTCATTAACATAACAAAAGAAACTTTC-TTGCTCTCATCACTTAGGAAGTGCA AGGGGTTTTGGAAGCTCTGTGCTGGAAACAG--ATCAAGACTAAGTGTATACTTATATATTTCTCACTATGAATCACAAT AGAACA---TG----GA---AAAA-AAAGAAAAAGT---------AGCAAAGTAAAAGGCCTTCCCTAGCTTTGG >Erinaceus_europaeus GTCATGGTA---------TTTCACTAGGTTGATCTTTTGAATGCAGTGCAAATGAAT-----GGGT---GAAC-ACTGTG GTCACCAGTTCTCCAACATCTCTGTG-TGTGTATGGGGGAGTAGAAGGAGTTGCCCAAGATAGAAAGTCAGT-TTCAATA CCAGCTGAGTATTCACTCATTTAATTCAGTTTTCA-------CACTATTTACCTTACTGTAGCATCAAGTTCCACTGATC AGAAAATTGGTCCTATTAGACTACTTCCCAAGGTCCTCCTTCCACTTCAGAAGCCAGTCACAAATTCTGACTGCCACTTA TG-TGCTGAC---CTGGTCCTAGGCTGGAAGTTCCTG------TCTCCTTAGGTTCACTGAATTTTATAGAGTAGCTCAC AGAAGCCCACAAAACACCTTACATACTGTGTTACCTATT-----ATACTAGGATATAACTCCAGAAGATCCAGCTGGAAG AGATACATAGGACAAGGTATGGGGAAATGGGTACA------------------CAAGTGTGTCACTGTTCCCAAATTATT TATATGCTCACTAACCAGGAAGAGCCCCCAACCACAACCTCTTGGGTTTTCATGATGGTTTCATTGCATAGGCATGAGAC TGACTAATGAAATCAATGGCCACTGGTGATTGACTGAACACAATCTCCAGCCCCAGAACATTCCCTAGAGATCAAG---- ------------------AGTGGGACTGGAAATTCCAACTCCCCTAATCACAAGGTTGTGGCCACTTTGCAATCAGTC-- --------------------------CTTCGTTAACATAACAAAAGACACCCTC----CATTCTTGACTCCAGGAAATCC AAGGGTTTTGATTTATCTCCGCTGGAA------------ACCAAA----------------------TACAAAACCCAAT AGCACA---AGGTAGGT---AAAGACAAGAAAACCA---------AATAGAGAAAAAGCCTTTCCCTAGTTTCAG >Canis_familiaris CTCC--GTG---------TTTCACCTGGATTCTCTTTCAAGTTTAATGCAGATGAATAA---AGGC-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------AAAGAAAATGAAAG-----------AACAGAGAAAAAGGTCTTTCCTCGCTGCAG >Felis_catus CTCA--GCG---------TTTCACCTGGATACGCTTTCAAGTTTAATGCAGACGAATCA---AGGC-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------AAAGAAGAAGAAACGGAGAAC----AAGAGGGAGAAAGGTCTTCCCTCGGTTCGG >Manis_pentadactyla TTCA--GTG---------TCTCACCTAGACACTCTTACAAGTTCAGTGCAGAAGAATAA---TGAT-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------AAAG-AAAAAACAACAACAACACAAAACAGAGAAAAAGGTCTTCCCTGAATTCAG >Sus_scrofa GTCCCAGTGTACAACAACTATCACCTGGATAC---TTCAAGTTCCCTGCAGATGACCAG---CAGT-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------AAAGAAAAGAAGAAAAAAGAA----GAGTGACAAAAAGGTCTTCCCTGGCTTCAG >Bos_taurus TTCACTGGG----------GTCACCTGGGTACTC---CAAATGCAATGCACATGAACAG---CAGT-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------CAAG-AAAAGAAAAGA---------AATCAAGAACAAGGTCTTCCCTGGCTTCGG >Myotis_myotis TTCACAGTG---------TTTCACCTGGAATCTCTTTCAGGTTCCATGCAGATGGACAA---TGGT-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------GAAG-ACAGAAAAGAAAC-------AACAGAGAAAAGGGTCTTCTCTGGGTTCAG >Rousettus_aegyptiacus TTTGCAATA---------TTTCACCTGGACACTCTTTCAAGTTCAACACAGTTGAACGA---TAGT-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------AAAG-AAAAGAAAAAA---------GGCAGAGAAAAAGGTTTTCCCTGGTTTTAG >Homo_sapiens TTCACAGTA---------TTTCACCAGGATACATTTTCAAGTTAAACCCAGATGAATAA---TGGT-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------AAAGAAAAAAAAAAAAA--------GCAAGAAATAAAGGCCTTCCCTAGCTTCGG Horse11_LINE >L1MA9_3END -------------------------------------------------------------------------------- ----------------------------------GGATGAA-TAAGTTC----TGGAGATCTA-ATGTACAGCATGGTGA CTATAGTTAATAA-TACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCACCACACACAAAAA A-ATGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAA ACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACC-----TCAATAAAGCTGGAAAAA----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------ >Sus_scrofa TATATAAATTCATGGTTTT---ATTT-CAATATTTATTTCAATCTCTAGTATATAT---AATTAGTTCACAATG---TTG TGGGTAAAGTAGGCCCCAAAGCACATA-TTTTGGTTATAAACTGA-TAT----CAGAGGTTTGTATATATACCATGATGA CTATAGCAAATAATTACTGCATTGAATATTCAAAAGTTTCGAAGAAAGTAGATATTAAATGTCCTCTTCACAGGGAAAAC A-TCTATTACTACGTATTGTGATGG--GTGTTAACTGGATTTTCT---GTAATCATCTGATGATA-ATCATAATATCAAA CCATTATGTTGTGCACCTGAATCTAACATAA-TGTCACATACCAATTACACT-----TCAACTAATTTTTTAAG------ TCCCCTCTA-----AA-AAAATTCACAAGG---ATAATTGACATCAGAAAAAGGA------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -GTTATTGGAAATAGAGAT---------AA--AGGGGGGTCT >Tursiops_truncatus CACATAAGTCAATTATTTT---ATTT-CAATTTTTAGTTCAAATT-AAGCACATAT---AAAAAGTTCACAAGA---TAG TGAGTGAGGGGGGTCAAAAAGTATAAACTTCCAGTTATAAACTAAGTCA----CAGGTATGTG-ATGTATAGCATTGTGA CTATAGTTAATAA-TTACTTATTGAATATTTTAAAGTTGTTAAGAGAGTAGGTCTTAAGAGTCTTCATCACAAGAAAAAA A-ATTGTTACAGTGTATGGTGATGG--ATGTTAACTAGACTAACCTTCGTTATCATTTTGCATTGTATC---------TA TGGTTATTCTG-ACACTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNN---NNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNN--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Equus_caballus TACATAAATCTATTATTTT---ATTC-CAATTTCTAATTTTAACT-TAGCAAACAC---AAAAAGTACACAAGG---TGG TGGGTGAAGGAGGTCAAATGGTACAATCTTCCTGTTATGAAATAAGTAAGTGCTTGGGATATA-ATGTTTGGCATGGTGA CTATAGTTAATAA-TAATGTATTGCATATTTGAAAGTTGCTAAGAAAGTGGACATTAAGAGTTCTCACTAAAAGAAAAAA ACATTGTTACTATATATGGTGGCAG--ATGTTAACTAGACTTATTGTGGTGATCATTTGGCAGTATATGCAAATATCAAG TCATTATGCCATACACCTAAAACTAAC--AA-TGTTATATGTCAATTATACC-----TCAAAAAATTTTTAAAAATAAAA TATCCTCTAAA---AA-AAAGTCCACAAGA---AGAATTGACATTAATAGCTA--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----TTTGGAAATAGAAGTGTGGAGCTGAA-GAGGGAGGCCT >Ceratotherium_simum TATATAAATCAATTATTTT---ATTT-CAATTTCTAGTTTAAACT-TAGCACACAT---AAAAAGTCCACAA-G---TAG TAGATGAAGAAGGTCAAAAGGTATAAACCTCTAGTTATAAGATAAGTCA----TGGGGATGTA-ATGTACAACATGTTGA CTATAGTTAATAT----TGTATTGCATATTTGGAAGTTGCCAAGAGAGTAGATTTTAAAAGTCCTCATTACAAGAAAAAA AATTTGTTACTATATATGGTGACAG-----ATAACTAGACTTATTGTGGTGATCATTTCACAAT--ATGCAAATATCAAA TTATTATGTTGTACACCTGAAAGTAACATAG-CGCTGTATATCACTTATACCTTGATTTAAAAAAATTAAAAAAATAAAA TACCTTCTAAA---AA-AAAGTCCACAAGG---AGAACTGACATTAATAGCGA--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----TTTGGAAATAGAAGTTTGGAGCTGAA-GAGGGAGGTCT >Canis_familiaris TACATGAATCAATTATTTT---ATTT-CAATTTCTAGTTCAAATT-TAG--CACAT------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------AA-AAAATCCACAAAG---AGAATTGACACTAATAGCAA--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----TTTGGAAATCGAAATTTGAAGCTAAA-GAAGGAGTTCT >Felis_catus TACATACATCAATTATTTT---ATTT-CAATTTCTAGTTCAAATA-TAACACACAT------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------AA-AAAATCCACAAGG---AGAATTGACAGTACTAGCAA--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----TTTGGAAATAGAAACTTGGAGCCGAA--GAGGAGGTCT >Manis_javanica TACTTAAATAAATTATATT---ATTT-CAATTTCTAGTTCAAATT-TAGCACA-AT------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------AA-AATATCAACTATG---TGGCTTTATATTAATAGTGA--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----TTTGGAGATAGGTGTTTGGAGCTGAAGGAGGGAGGTCT >Myotis_myotis TATATAAATCAATAACT-----ATTT-CAATGTATAGTTCAAATT-TAACACATAT------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------AA-AATATCCACAAGG---ATACTTGACATTAACGGTGA--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----TTTGGAAATAGAAGTTAGGAGCTGAG--AAAGAGTTAT >Rousettus_aegyptiacus TACTTAAATCAATTACTTC---ATTT-CTATTCCTAGTCC---TT-T-----ATAT------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------AA-AAAGTCCTCAAGG---AGAATGGACATTAATATTGA--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----TTTTCAAATAGAAGTTTGGAACTGAA-GAGGGAGGTCT >Condylura_cristata TA----AATCATTTTTTTTTAAATTT-CAATTTCTAGTTCAAATT-TAGCACATAT------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------AT-CATGTCCATAGGT---ATAAATAACATTA---------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------ATAGGGATTTGGAACTGGA-GAAGAAGGGCT >Scalopus_aquaticus CACAT----CATTTTCTGAAAAATTTTCAATTTCTAGTTCAAATT-TAGCAAATAT------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------GA--AAGTCAACAAGG---AGAACTAATAT------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------AAATAGTGATTCAGAACTGAA-GAGGAAGGGCT >Homo_sapiens TACATAAAGCAATTTTT-----ACTT-CAATTTCTACTTCACAGT-TAGCACATAT------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------GTAGAAGTCCACAATG---AGAATCTGCCTTAGTGAAGTAGCTCCTTGGCTCTTCCTAATTTGTTA GTTTTTTTCTCTTCATTCTCACTTCTCTAGCTGCTCGTGTGGTCACTTACCTCACAGCTGTCATAGATATTTATTTTCAA ATGGACCAATTATCTCTCCTTGTCTCTGCAATGCATATTTGTCTTTTATGTGCTTTGCATTCTACCCCAGGATGTGTCAT TTTTAAATCCAGGTATGATATAATTTGTTATACCGTAACTAAGCATTTCCAAACTCATACTTAGTTTTAAGGTGTACCAA CAAATGTTATAATACACTAAGAACAAGGTGATGTCTTACTGTCGCACCAAAGTTTTGAGATGAATGCTACAGACATAGAA ACAGTATAGAATGTGGCAATTATGTGGAAAATAATTATGGTTGATTTATATATAACTGGGCAATGAATATTGTGTGCAGG TATGACATACTAAAAAGCACTTATTGTTGCTGTTGTTTCTGCAATGGTTAGTTTTATACCTTAAGTTGTCATGGACTTTG GTGGCAAAATTGAGGGTGTTGTGGTCATATGGAGTTAGCAATTAGTGCATCACTTCATCAATCTATTTTAATTAATTGGG TTGTGCAAAAGGTTTAGTTTGAAAAACAGAACTCTGCTACTAAAGAAAAGAAGCAAAAAGAAGTAATCATCATAATCATT ATACAGTATATTATTAGCAGGGAAGTAAAATGATCTTTTATACATTTTAACAAATTTAGAACAAAAAATTCTAAATGAAT CAGAAAGGTGTGCTAGTCACATCAAGTTTCCCATAACAAAATCTAGGTAAAAAGATAACATGAGGTTTAGTAAAGGCAGT AGCAATGTAGAAAGCGGTGGGAATTAAAGCGATATATAGTAGGAAGAGCTGACAATACTCCACAACATATTTTTAAATTC CAGGCAAAGGAAATTGGGTACGTAATTGTGCTATTGTGATACTGGAGTGCTGGAGTCAGAAAAAGAAGCAAATCTTTCTG GAGGTGAGGGTTGGAAGAGCATTATGGTAGTTATTTTTGAAATATTTTGCTTGTTCTGCCCATAGGTGGGGAAGCTTGGT AGGTTTTAGAAATAGAATTTTGGAGCTAAA--AAGAGGATCT Horse11_LTR >MER34C_CF -------------------------------------------------------------------------------- ---TGTTGAGGAGAAAAAAATTTT-CCTCTACCCTTCTAGGTTCTTCTGGCTGGTCTAAGAAT-CAAATTGACATAAGAC AGATTAACAGGAGAAAAACAAACAAAAGTTTAATAACATATGTATACCTCCTGTATACATGGGAGAGACCCAGGAAAACT GAGTAACTCCCCGAAATGGCCCAA-------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------GCCATCACCTTAAATACCATCTC CAGCTAAAGACAAAA-AAGATGTTGGGGGTG-GGGAGTCAGTTATGGGAGGTTACCAGGAAAAGCACAGTAAA------- -------CAAGGGTAAGGTTGTTATGCAGATTTAAGTCCTTGCCTTC-TCCATTGAT-AAGAGTTTCTAGAGATTTAGAG TCATCCTCCTCTTCCTGGTACAGAGAGGGAGACACCCTTAC-AAATGGAGATTTCCCTTATAAATGTAAATGTCTCTTAC AAAAGGGTAACTTCTACTCGGTTTTCAGAGCTTCTCCTGTGTCTGCAGTTTCTTAAAAATAATCAGCCTAAAATAATCCT TATGCCAAAGAGGCATATTTT-----GGGGTGG------CAAATTCTGCTCCCCTTCA---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------- >Equus_caballus AGTCAGTCTCTGA-GAAAAAGGCAAGGCCTAAAATAAA--ACTTAGTAT---CC----------------------ATT- --GTGGGGAAGAAAAAATAATTTTCCCTCTACCTTTCTAGGTTCT--TGGCTGA---GGCAAC-CCCTGTAATAACAGAC AGATTAACAGGGGGAAAACAAACGGAAG-CTAATAAC---------------------------------TAAGGATACT GAGTGACTCCCCCAAATGGC-CAA-------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------ACCCTCAGGTTAAACACCATCTC CAGCTAAAGACAAAAGAAGACGTTGGGAGTGGGGAAGCCAGTTATGGGAGGGTAGCAGGCAAAGCACAGTAAA------- -------CAAGAGCAAGGTGGTTATGCAGATTT--------GCCTTCTCCCATTGATAAAGAGTTTCTGGAGATTT--AG TCATTCTTCTTTTCCTGGTACAGAGAGGGAGACATTCCCCCAAAATGGAGATTTCCCTTTTAAATGTAAATGTCTCATAT AAAAGGGTAACTTCAGGTC-ATTTTCAGAGCTTCACCTGTGTCTGCTGTTTCTTAAAACTTATCAGCTCAAAATAATAAA TACGCCAAAGAGACATATTTT----TGGGGTGG------CATATTTTGCTCCTCTTCA---CTGTC---AAACATT--TA TA-TTCCCAAATAATAATCTAACTTGATTGTCAC---------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------ATGGTTTA >Ceratotherium_simum AGTCAGTCTCTGA-GAAAAAGGCAAGGGCCAAAATAAA--ACTTAATAT---CT----------------------GTT- --GTGGGGGAGAAAAAT-AATTTTCCCTCTACCTTTCTAGGTTCT--TGGCTGA---GACAAT-CCCTGTAATAAAAGAT -GATTAAT--GGGAAAAACAAATAGAAGTTTAATAACACA--TATACTTCCTGTATACAAGGGCGATGCTAAGGAA-ACT GAGTAATTCCTCCAAATGGCCCAA-------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------GCCATCTCCTTAAATACCATCTC TAGTTAAAGACAAAAGAAGATGTTGGAAGTGGGGGAGCCAGTTATGGGAGGTTATCAGGCAAAGCACAGTAAA------- -------CAGGAGTAAGGTTGTTATGCAGATTTAAGT------CTTCTCCCATCTATAAAGAGTTTCTAGAGATGTATAG TCATCCTTCTCTTCCTGGTACAGAGAGGGAGACATCCTTAC-AAATGGAGATTTCCCTTATAAATGTAAATGTCTCATAT AAGAGGGTAACTTCTACTC-ATTTTCAGAGCTTCACCTGTGTCTGCTGTTTCCTAAAACTAACCAGCTCAAAATAATCAA TATGCCAAAGAGCCATATTTT-----GAGGTGA------CATATTTTTATCCCCTTCG---CTGTC---CAACATT--TA TA-TTCCCAAATAATAATCTAATTTGATTGTCAT---------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------ATGGTTTA >Myotis_myotis AGTCAGTTTTTGA-GGAAAAGGCAAGGCCTAAAATAAA--ACTTAATAT---CT----------------------GTT- --GTGGGAGAGAAAAAA---------------------AGGTTCT--TGTCTGA---GACACCTCTCCGTAATGAGAAAC AGAATGACAGGAGAAAGACAAATAGAAAGTTAGTGTCATATATACACCT-CTGTATACAGGGGAGATACTCAGGAAAACT GAGTAACTCCCCAAAATGGCCCTA-------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------AACTCTAAATATTAGCTG TAGCTAAAGACAAAAGAAGATGTTGGGGGAG-------CAGTTATGGGTGGCTATCAGATAAAGCAAGGTAAATAGTGTA AGGTAAGTAAGGGTAAGGTTATTACACAGACTTATGTTCTTTCTCTCGCCCATTGAT-AAGAGTTTCTAGAAATTTAGAG CCCTCCTTCTCCTCCTG-TACTGAGTAGGAGACACCATTAC-AAATGGAGATGTCCCTTTTAAATGTATATGTCTCTTAC AAAAGGGTAACTCCTACT--ATTTTTAGAGCTTCCCC--TGTTGGTTGTTTATTAAAAATAACTAGATCAAAATAATCAG TATGTCAAAGAAGCATATCTTTTTGTGGGGAGGGTAGAAGATATTCTGCTCTTTGATG---CTATT---AAAGGTGC-TA TA-TTCCCAAATAATAACCTAATTTGATTGTCAC---------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------AATGGTACA >Rousettus_aegyptiacus AGTTAGACTCTGA-GAAAAGGGCAAGGCCTAAAATAAA--ACCTAATAT---CT----------------------ACT- --GTGGGAGAGGAAAATAAATTTTTCCTCTACCCCTCTAGGTTCT--TGGCTGA---GACATTCCCCTGTAATAAATGAT GGGTTAACAGGAGAAAGAAAAACAAAAGTTTAATGACATC--TATGCCTCCTTAATACATGGGAGATTCTCAGAAACACT GAGTAACTCCCTGAAATGACCCAATCCTGTTACCACAGACTCAAAGTGTCCGCTTCCCTGCATGCATCCAAGTCAAATAA GATATGAACAGTAGATTGCAGCAAAGAAAGTAAAGTTTTATTTAAGGAATTGGCACCAAGCCCAGAGACACTGGTGAACT AGTGCTCTCAAAAACCTGGCTCCCCGATGGCCTCTAGTGGCTAGGTTACTATAATCATGGTTACTACGGGTATTAGGATC ATGGGCTCTACCAGTTAGTCAGGACTAAGGCAAAGGGGAATTTATTCAGACATCAGGTCCTGATGTCAATCATGGCATTG TTCTGTTCAGTTTCCAGAGGATGAGATCCATCGGTCCATTTCATGAGTCCAGAGCTGAAACATAACTGAGGCCAAAGTGG TTTCTTTATTTGACTAAAACTGTTAGGTAGCTAGTCAGACATGAATGACAGAGGAACAAGGGAATGGAGGCCCAGCCTAG AGACTGCCCAAAATACACTTCATTGGTAGTTAAAGACTTCCTTCTACATCCGGGGAGACAAAGAACTGGAGAGCCATACG TATAGTTGGTTTAATCCGGGCCACAGACACTTGTGCAGAACATATTACCCTAACCTGTCCACAACCTTTGCCTCATTATA TCATTATACTACCATATTTATGCCAGGAAATTTATGAATCTAATTATAACAGACTGAATTCCGGGTAAGCACATGAGCTC TAAAGCAGTTATATAGCAGTCAAGTGTCAAATCGAAATGACCTCATATGCCTAGTCACCTAGGAACACCCTTGTAACCAC CCACCATGGCCCCAGTATAATATAAACTTTCCTACTTCTACGTTGTTATAGCTCTCTTGGCTGAAAAGTCGCCTCTACGT CAGGGTGTACTCTAGCTCTTATTTCTTTTATCTTTTCTTTTCAACTCCCAAGTTCCACAGGGCTGCAGCCTTCCTTAGTT TGGCCTGTCTCCTTCTAAAATATACCCTTAATAAATCTTTCTAAAATCTTGCTGATCTGTGATTCTTTGTTGTGTGGCAG TGAGAAAGAACTGAGGAGAAATGCTAATTGCACTTCTGCGAATTCTACCCCCCTCCCCACCCCATGCCATTTGGGGCGAC ACTGGAGTTCAAATATCCCCCAAATGGTAACAAAAACTTCGTTCTAATTTGAAGATTAGTTATTGTATCTGGGTCATAGT TGATAGCCCTGAAACTTTATTCTTAAGTGAGTTTGACTCTGACAAAAACCTAATATCCTTAGGGCTTAATGATTAAAAGG AGAGGATATAAAGTATACCTACAGGAGTATTTGATGGAAAGAATGCAAGTGAATCATAGTTCCATCAAGCTAAACGAAGC TAGCTTAAATGAAAGCAAAACGTCTGCTAAAGAAATGAAATTCGTGTGCCGTTACAATCCGTCTCCCTATATACTATCGT TACCTAAACTCAAAAGAAAAGGCTGCAGGTGGGGGAG-AAGTTATAGGAGGTGACCAGGAAAAGCACAGTAAA------- -------CTAAGATATGATTTTTACGTAGACTTAAGTTTTTGCCCTT-CCCATTGAT-AAGAGTTTCTAGAGATTTAGAG TCCTCCTACTCCTCCTGCTATAGACAACAAGATACTCTTAC-AAATAGAGATTTCCCTTATAA------ATGTCTCTTAC AAA-----------------------AGAGCTTCACCCGTGTCTCCTGTTTCTTAAAAATAACTAGCTCATAATAATCAA TATGCCAAAGAAACATATTTT------TGGTGG------CATATTCTCCTCTCCTACA---CCATT---GAACCTGT-TA TA-TTCCCAAATAAAAATTTAATTTGATTGTGTC---------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------AATGGTTTA >Canis_familiaris AG-CAATCCCTCAGAAAAAAGGCAAGGCCTAAAAAAAATAACTTAATAT---CT----------------------GTC- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------AAATATGTTTA TA-TTCCTAAATAATAATCAAAATTGATTGTCAT---------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------GTGGCTTA >Felis_catus AGTCAGTCTCTCA-GAAAAAGGCAAGGTCTAAAAAAAA-----TAGTAT---CT----------------------GTT- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------AAA-ATGTTTG TA-TTCCCAAATAATAATC-----TGATTGTCAC---------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------ATGATATCGTA >Manis_pentadactyla AGTCAGTCTCTGA-GGAAAAGGCAAGGGCTAAAATAAA--AC--AGTAT---CT----------------------ATC- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------AAACATGT-TC TA-TTCCCAACTAGTAATCTAATTTGATTGTCAC---------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------AGTGGTTTA >Sus_scrofa AGTCCATCTGTGAGGAAAAAGGCAGGGCCTAAAGAAA---------TAT---TT----------------------CTC- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------AAACCTGT-TA TAATTCACAAATA-------------ATTGTCAC---------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------ACTGGCTTA >Bos_taurus AGTC-GTCTCTAAGAAACAAGGCGAAGCCTAAAATAAA--ACTTAGTAT---CC----------------------GTC- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------AAACATGG-TA TA-TTTCCA---AATAATCGAATCGAAGTGTCAC---------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------ACTGGTTTA >Condylura_cristata AGCCAGTTTCTGA-GAAAAAGGCAAGGCCTAACATGCC------ATTAT---CT----------------------GTC- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------AAACGTGT-TA TA-TTCCCAAATACTAATCTAATCTGATTGTCAN---------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------NNNNNNNNN >Solenodon_paradoxus AATCTGTTTCTGA-GACAAAGGCAAGGACTAAAATAAA--ACTTCCTGT---CT----------------------GTC- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------AAACATAT-TA TC-TTCCCAAATAATAATCTAATCTGACTGTCACTGAAGGGAAGTAGAATAGACTGCCCCAAAATATGACACTTTGGCAT GTACATTGTTTTGAGTTGAAGGTCATCAAGACGCAGAACATTAACGAAAAGCTTACCTCTCCCTTAACTACCTGTAAGAA TTTAGATGGGGTATCTGGCCCAGAAAGAACTATTACCAAAAATAACTTTTTATCTTAATGACCTATCTGTAGGGCAGGGC GAATATCTAATTGTCAACATCTGCTCTTATTCAGTGAACTGCCTTCTTCCCCCATGCTGTCCCTGGCCCCTATCCTGCTT GAACTAAGGCTTGAGATGACATATAAGCTTCAGAGGCCCACCTAGTCCTTGAGCCTCATGACTTTGAGCTCCAGTATATA TGTAATTAAATTTGCTTTTCATGTGTTAATCGGTCTTATGACAATTTACTTACTACACTAGATGAAAAACTAGAAAGCAA GAGAGAAATGTTTTCTTCACCTACATCATAATAGTTTA >Homo_sapiens AGTCAATCTCTGA-GAAAAAGGTAAAAATTAAAATGAA--GCTTCCTAT---CTCACGTGACAGATAGTATGATAATAG- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------AAACAAAA-TA TT-CCTCCAAAC-ATAACCTAATTTGATTGTCAC---------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------AATGGTTTA Horse13_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------TGAATAGACATTTC TCAAAAGAAGACATACAAATGGCCAACAGGTATATGAAAAGATGCTCAACATCACTAATCATCAGGGAAATGCAAATCAA AACCACAATGAGATATCACCTCACACCTGTTAGAATGGCTATTATCAAAAAGACAGAAGATAACAAGTGTTGGCGAGGAT GTGGAGAAAAGGGAACCCTTGTACACTGTTGGTGGGAATGTAAATTGGTACAGCCATTATGGAAAACAGTATGGAGGTTC CTCAAAAAATTAAAAATAGAACTACCATATGATCCAGCAATCCCACTTCTGGGTATATATCCAAAGGAAATGAAATCAGT ATCTCGAAGAGATATCTGCACTCCCATGTTCATTGCAGCATTATTCACAATAGCCAAGATATGGAAWCAACCTAAG-TGT CCATCGACGGATGAATGGATAAAGAAAATGTGGTATATATAC----------------------------ACAATGGAAT ATTATTCAGCCTTAAAAA--AGAAGGAAATCCTGCCATTTGTGACAACATGGATGAACCTGGAGGACATTATGCTAAGTG AAATAAGCCAGGCACAGAAAGACAAATACTGCATGATCTCACTTATATGTGGAATC---------TAAAAA--------- --------------------AGTCAAACTCATAGAAGCAGAGAGTAGAATGGTGGTTGCCAGGGGCTG--------GGGG GTGGGGGAAATGGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGT ACAGCATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCACC ACACACAAAAAA---------------------------------ATGGTAACTATGTGAGGTGATGGATATGTTAATTA GCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAA------ ---TTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA-------------------------------------- ------------------------------------------------- >Sus_scrofa TATTTCCTATGA-------------------------------------------------------------------- ------------------------------------------------------------------------------AG AAGT---------GCTATTAAGTGACAACCCGCAGAAGTCTTTCAC---AAAACTGTCTT-------------------- ---ATAGAAGATATACAAAAGGCCAACAGGTATATGAATAGATGCTCAATATCGTTAATTATTAGGGAAATGCAAATCAT AATCCTAATGAGGTATCACTTCACACTTGTTAGAATGCTCACCAACAAAAAGAAAAGAGATAGCAAATACTGGCGAGGAT GTGAAGAGA---GAACCCTGGTGCACTGTTGGTGGGACTATAAACTGGTACAGCCA-TATGGAAAACAGTATGGAGGATC CTCAAAAAATTAAAAATTGAACTACCATATGATCCAGCAATTCTACTTCTGGGAATATATCCAAAGGAAATGAAAAC-CT AACTCAAAAAGATATATTCACTTCCATGTTCACAGGAGCATTATTTATAACAGACAAGACATGGAAACAACCTAAGAAGT CCATCAATGGAGGAATGGATAAAGAAGT-----TATATATAC---------------------TTCATATACAATGGAAT ATTATTTAGTCATAAAAAA-ACAAGGAAATCCTGCCATTTCTGACAACATGGATGGACACGTAGGACAGTACATGAAGTA AAATAAATCAGGAAGA-AAAGACAAATACTGTATGATCTCGCCTATATGTGGGATCACACACACACAAAAATCCCCAATG CCCCCCCCGTTTAAACTCTACTCCAAACCCCTAGAAAAA-AGATCAGATTGGCAGTTACCAGAGGCAAGGGGTTGAGGGG GAGAGGGAACTGGCAGAA-GATTGTCAAAAGGTACAAACATTCAGTTA--TAAGATAAATCAGTAC-AGAGATGTAATGT AGGACA---TGACTACAGCTAACCCTGCTATATGATATATAGCAAAATTGTTAATAAAGTAAATCTTAAGAGTTCTCATC ACATGGATAATTTTTTCCTTTTC------------------TTTTATTCTATCTATATAAAATTA-----ATGCTAGCTA AGC-TATTGCAGTAATCTTTTCGCAATATAT--GTACATCAGACCACTGTGCTGTACACCTTAAACTTACACACGTATGT CATGTCATGTACATCAATTATAGCTCAACAAAACTGGGAA------AAAACTGTCTTCTA---GGTTTAAAGAC-ACAGT CTATGCACTTAATGCTAATTCTTAAAA---------CTCTT-TACTGAT >Bos_taurus TACTTGCTATGA-------------------------------------------------------------------- ------------------------------------------------------------------------------AG AAGT---------GCTATTATGGCACAATCCACAGAAAGTTTTCAT---AAAATTGTCCTCTA-----------CATTTC TCCAAAGAACACATACAAAAGGCTAACAGATACATGAATAGGTGCTCAACATCATTAGTCATTAGGGAAATGCAAATCAC AACCGCAATGAGGTATCACCTCATACCTTTCAGAATGGCCATCAACGAAAAGACAACAGGTAAAAAATGCTGGTGAGGAT GTGATGAGA---GAACCCT-GTGCACTGCTGGTGGGACTGTAAACTGGTATAGCCA-TATGGAAAACAGTATGGAGGATC CTCAAAAAATTAAAA-TTGAACTACCATATGATCCAGCAATTCTACTTCTGGGAACGTATCCAAAGGAAATGAAAACACT AACTCAAAAAGATATATGCATTCCCATGTTCATAGCAGCATTATTTACAATAGGCAAGACATGGAAACAATCTG---TGT TCATCAATGGAGAAACGGATAAAGAAGTTTTTATATACATACATATCCATATGTATATATGGATACACATACAATGGAAT ATTATTCAGCCATTAAAAACACAAGAAAACACT---ATTTGTGATAACATGGATGGACCTTGAGGGCAGTATGCTAAGTG AAATAAGTCAGACAGA----GGCAAA-ATTCTATTATCTCAGTTATATGTGGAAAT---------AAAAAA-----AAAA CCCAAACAATAAAAACCCCACACCAAATTAATACAAAA--AGATAAAATTTATAGCTACTACAGGTAGGGGTTT--GGGA GAGGGGGAACTGGAGAAA-GATGTTCAAAACGTACAAACTTTCAGTCA--CAAGATAAATTAGTACTAGAGTTGTAATGT AGAACA---TGACTACTGCTAATGCTATTGTATGATATATAGCAAAGTTGTTAAGAAAGTAAAACA-AAGAGTTCTCATC ACAAGGATAATTTTTGCCCTCTTTTCTTTC-----------TTTTATTTTTATTATGTGAGAAGATGA--ATGTTCGCTG AACATATTGTAGTGATCATTTCACAATAAAT--GTAAGTCAAACCATTATGCTATAAACCTTAAATTTATATG------- ---GTGATGTCTGTCAATGATATTTCAATAAAAGTGAGGAA-----AAAACTGTCTTTTA---GGTCTAACGAC-ACAGC CTATGCACTTAAAGCTAACTTCTCAAAAAC--------------CTTGT >Equus_caballus TATTTGCTATGA-------------------------------------------------------------------- ------------------------------------------------------------------------------AG AAGT---------GCTATAATGGCAGGACCCTCAGAGTTCTTTCAC---AAAACTGTCTTCTA-----------CATTTC TCCAAAGAAGATATATGAAAGGCCAACAGGTACATGG--AGATACTCAACATCTCTAGTCATTAGGGAAATGCAAATTAA AACCACAATAAGATATCACCTCATGCCTGTTAGAAAGACCATCAACAAAAAGACAAGAGATAA-GAATGCTGGTGAGGAT GTGGAGAAAAAGGAACATTTGTGCACTGTTGGTGGGATTGTAAACTGGTACAGCCACTATGGAAAACAGTATGAAGGATC CTCAAAAAATTAAAAATTGAACTACCAAATGATCCAGAAATTCCACTTCTGGA---ATATCCAAAGGAAATGAAAACATC AACTCGAAAAGATATCTGTATCTCCATGTTCACTGCAGCATTGTTTACAATAGCCAAGACATGGAAAGAACCTAAA-TGT TCCTTGATGGATGAATGGATAAAGAAGATGTGGTCTATATAT----------------------------ACAATAGAAT ATTATTCAGCCATAAAAA--ACAAAGAAATCCTGCCATTTGCAACAACATGGATGATCCTTGAGGGTATTGGGCTAAGTG AAAAAAGTCAGATAGAGAAAGACAAATACTGTATGATCTCACTTAGGCACGAAACC---------TAAAAA------AGA AATAATTAAGAAAAAC------CCAAACTCAGAGAAAAAGAGATCAGAT------------GGGAGTGGGGCA---CGGG GAGGGGGAACTGGAGACA-GGTAGTCAAAAGGCACAAACTTCTAGTTA--CAAGATAACTAAGTACTAGGGATATAATGT ACAGCATGATGACTATAGTTAACACTGCTGTATGATATACATGAAAGCTGTTAAGAGAGTAAACTCTAAGAGTTCTTATC ACAAAGAAAAAAATTTCCTTTCCTTTTTTTGGGCTTTCTATTTTTATTGTATTTATATGAAACGAGGG--ATGCTAACTA AACTTACTG--GTAATCATTTTACGATGTAT--CTAAGTCAA---------------ACCTTAAACCT-TACA------- ---GTGATGTATGTCAATTACATCTCCATAAAAATAGGAGAAA---AAAACTGTCTTCTA---GGTCTAAAGAT--CAGT CTGTGCACTTAATATTAAGTTCTAAAAAATCCCAAGCCCTT-TACTTGT >Ceratotherium_simum TATTTTCTATGA-------------------------------------------------------------------- ------------------------------------------------------------------------------AG AAGT---------GCTATAATGGCACAACCCACAGAGGTCTTTCAC---AAAACTGTCTTCTA-----------CATTTC TCCAAAGAAGATACACAAAAGGCCAACAGGTACATGGAAAGATGCTTAACATCACCAGTCATTAGAGAAATGCAAATCAA AACCACAATAAGACATCAGCTCATGCTTGTTAGAAAGGCCATCAACCAAAAGACAAGAGAAAACAAATGCTGGTGAGGAC ATGGAGAAAAG-------TTGTGCACTGTTGGTGGGATTGTAAACTGGTACAGCCACTATGGAAAACACTATGGAGGATC CTCAAAAAATTAAAG-------TACCATATGATCCAGCAATTTCACTTCTGGAAATATATCCAAAGGAAATGAACACAGC AACTTGAAAAGATATCTGCGACCCCATGTTCATTGCAACATTGTTTACAATAGCCAAGACATGGAAACAACCTAAG-TGT CCATCGATGGATGAAAGGATAAAGATGATGTGGTCCATATAT----------------------------ACAACAGAAT ATTATTCAGCCATAAAAAA-ATGAGGAAACTCTGTCATTTGCAACAACATGGATGGCCCAAGGGGGCACTATGCTAAGTG AAATAAGTCAGATAGAGAAAGACAAACACTATCTGATTTC----ATACGTGAAAAC---------TAAAAA--------- -------AAAAAAACCAACAAACCAACCTGATAGAAAATGAGATTAGAT--------AGTAGGGCGTG--------AGGG GAGGGGGAATTGGAGAAA-GGTAGTCAAAAGGTACAAGCTTCCACTTA--CAAGATACATAAGTACTAGGGATGTAATGT GCAACGCTGTGACTGTAGTTAACACTGCTGTACGATATTTAAGAAAGTTGTTAAGAGAGTAAATCCTAAGAGTTCTCATC ACAAGGACAAAATTTT--TTTCTTTTTTTCTTTCTTTCTTTTTTTATTGTATCTATATTAGATGATGG--ATGCTAGCTA AACTTATTGTGGTCATCATTTTACGAAATAT--CTAAGTCAAACCATTATGCTGTACACCTTAAACTTATACA------- ---GTGATGTATGTCAATTACATCTCCATAAAACTGAGAGAAA---AAAACTGTCTTCTA---GGCCTAAAAACCACAGT CTGTGCACTTAATATTAATTTCTTAAAAATCCCAACCTCTT-TACTTGT >Canis_familiaris TACTTACTAT---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------GCTCTAATGGCATGACCCATAAATGTCTTTCAC---------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------AAAACTGTCTTTTA---GGTCTAAAGAC--CAGT ATGTGCACTGAGTGATAATTTCTCCAAGATCTGAAGCCCTT-TAGTTGT >Felis_catus TATTTGCTGTGA-------------------------------------------------------------------- ------------------------------------------------------------------------------AG AAGT---------GCTACAATGG-ACCATGCATAGAGGTCTTTCAC---------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------AAAACTGTCTTCTT---GGTCTAAAGACCACAGT CTGTGTACTTAGTGTTAATTTTGCAAAGATCCCGAGCCCTT-TATATGT >Manis_pentadactyla TATTTGCCAAGA-------------------------------------------------------------------- ------------------------------------------------------------------------------AG AAGT---------TCTTTACATGCACAACC---AGAGATCTTTCTC---------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------AAAATTGTCTTCCA---GGTCAA------AAAGA CCTAGAAATCAATGTGAATTTCTCAAATATCCAAAGCCCTT-TGTTTGT >Myotis_myotis TACTTGCTATGA-------------------------------------------------------------------- ------------------------------------------------------------------------------AC T------------GTTATAATGACACAATCCACAGAGGTCTTTCAC---------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------AAAACCATCCTCTA---GGTCTT------ATGCT CAATGCACTCAATGCTCATTTCTCAAAAATCCCAAGCTCTT-TACTTGT >Rousettus_aegyptiacus TATTTGCTCTGA-------------------------------------------------------------------- ------------------------------------------------------------------------------AG A-----------------------ACAATCCACAGAGGTCTTTCAC---------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------AAAATTGTCTTTTA---AGTCTAAAGACCACAGT CTGTGCACTTAATGTTCATTTATCAAAAGTCCCAAGC-CTT-TACTTGT >Crocidura_indochinensis TAATTGGTTCAAA------------------------------------------------------------------- ------------------------------------------------------------------------------AG AAATAAAAGGGG-GCTCAAATA-TACAAC--------------CAC---------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------AAAATT---TATTA---GATCGAAAGACCATAAT AT---------ATATTGATTTCTCAAAAGTCCCAATACCTTGTATTTCT >Sorex_araneus TAATAGGTCCAGAGAGACACCTCAAAAGGCTGAATGGCCTCAATTGACTCTAGTACCTCAGAGCACTGATAGGAATGACC CCTAAGCATAGAATAGAGAGTAGCCCTTGAGTTCTGCTGGGTGTGTTTCCCAAATCAAAAGCAAAAACTACGACCAATAG AAACAAGAAGGAAGCTGAAACAGCACAACCCATAAAAATCTTTCAC---------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------AAAC---TATATTA---GGTCTAAAGACCATAGT CT---------ATATTCATTTCTCAAAAATCCTGATACCTT------GT >Homo_sapiens TATTTGCTATGA-------------------------------------------------------------------- ------------------------------------------------------------------------------AG AAGT---------ACTATAATGGCACAATCCACAGAAGTCTTTCAC---------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------AAAATTGTCTTCTG---GGTCTAAAAGTCA---- CCCAGATCTTGATGCTACCTTCTTAAAATATCCACACCCTT-TACTCAT Horse13_LTR >MER34F_EC -----------------------------------------------------------------------TGAAGGGGA GCAGAATATGCCA-CCCCAAAATATGCCACTTTGGCATATTGATTATTTTGAATTAAAGTTACTTAAGAAACAGCTGGTG CAAGAAGGACACTCTGACCCTCCTTTGTCCCCCTGAAAGCAGGAAATAAATCTCCCATGTGAAAGGTACCCTCCCTGTAC CAGGAGGGTAGAAGGCATCCTTATCACCAGAGATAGGGAATTTAGGGCCGAGAAGGCTGTATAAACAAACCTTGTTACTT CTTCACTAATTTACTACCCCAAGCCCAAACCCCTTTGTCTTGTCAATTCTTCACAAATTTATTGTTTC------------ ----------------------------TTTGTCTAAAAGGTAT------------------------------------ -----AAAAGCTGCCTGCTTTGG-----------TCACTTCTTTGAGTCTCATATTTTTATGGGGCTCCTGTACATACAA AATTAAATTTGTTTTTCTCCTGTTAATCTGTCTTATGTC-AATTTAATTATTAGACCAGCCAAAGAACCTAGAAGGGAAG AAGGGAAAAGTTTTCCTCCCCTACA------------------------------------------------------- ----- >Canis_familiaris TTGT--GGGTCCTGAAATGCTTCTGGAAT-ATCTGTAAAACACAT---TTTTTGGGGAACA---ATGC---TGAAGGGGA GAAAAATATACCA--CCCAAAATATGCTGCTTTGGGATAATGATTATTTTGAA-TAAAATTTGTTGAGAAACAGCTGGTG TAAGAAGGACACTCTGATCCTCCTTTGTCTTCCTGAAAGCAGGAAATAAATCTCCCATGTG-AAGGTATCTTCCCTGTAG CAGGAGGGCGGAAGGCATTGTAATCACCAGAGACTGGGAAGTTAGGGCCAAGGAGGGTGTATAAACAAAT---------- --------ATTTACTACTCCAAGCCCAAACTTCTTTGACTTGTCAATTCTTCAAAAATTTGCTATTTC------------ ----------------------------TTAGTCTAA------------------------------------------- ------------------TTTGG-----------TCAC---TTTGAGTTCCATATTTTCAC-GGGCAACTGTACATATGA AATTAAATT-GTTTTTCTCCTCTTAATCTGTCTTATGTC-AAATTAACTATAAGACCAGCCAAAGAACCTAGAAGAAAAG AAGGGAAAAATTTTCTACCCCTACA---TTTT---ATTGGTATATTATTGTTTACTCAATTAATGAGTTTAGTTTCAGGA GCTTC >Felis_catus TTGT--GGGTACTGACATACTTTGGGGAT-ATCTGTAAAACACAT-AGTTTTTT-GGAACA---ATAC---TCAAAGGGA A-AAAATATGGCA--CCCAAAATATGCTACTTTGGCATAATGATTACTTTGAA-AGAAGTTAGTTAGGAAACAGCCAGTA CAAGAAAGTCACTCTGATCCTCCTCTGTCTCCCTGAAAGCAGGAAATAAATCTCCCATGTG--AGGGACCCTCCCTGCAC CAACAGGGTAGAAGGCATTGTTATCACCAGAG------------------AGAGGACTGTGTAAACAAAT---------- --------ATTTACTACCCCAAGCCCAAACTTCTTTGACTTGTCAATTCTTCAAAAATTTATTATTTCTGCGGCACCTGG CTGGCTCAGTCAGTACAGCACACAACTTTTAATCTCAGGGTTATGAGTTCAAGTCCCATGTTGGGTGTGGGGCCTACAAA AAAAAAAATAGTTCTCAGTCTGGAAGAAATCTCATCACGTTTTTGAGTCTCATATCTTCAT-GGGCTCCCGTATGTATGA AATTGAATC--TTTCTCTCCTGTTAATCTATCTTATGTCAAATTTAACGATTAGACCAGCCAAAGAACCTAGAGTGGAAG AAGGAAAAAGTTTTCCACCCCTACA---TTTT---ATTGGTATATTATTATTTACTCAGTTAATGGGTTTAGTTTTAGGA ACTTC >Manis_pentadactyla CTTT--GGGTACTGAAATA-CTTTGGAAT-ATCTGTAGTACAC---AGTTTTTC-AGAACA---GTTC---TGAAGGGGA GCACAACATGTCACCCCCAAGATATGCTACTCTGGCATATGGATTATTTTGAATTAAAGTTACTTTTGAAATAGCAGGTG CAAAAGGGACACTCTGACCCTCCTTTGTCTCCCTGAAATCAGGAAATATTTTTTCTATGTG-AAGGTACTCTTCCTGAAT TAAGAGGGTAGAAGGCACCCTTGACACTAGAGATAGGAAATTTAGGGCAGAGAAGGCTCTATAAACAAACTTTGTTACTT TCTCACCAATTTACTACATCCAGCCCAAACTTC---ATCTTGTCAATTCTTCACAAATGTATTGTTT------------- -------------------------------GTCTAAAACCTAT------------------------------------ -----AAAAGCTGCCTGCACTGG-----------TTACTTTTTTGAGATGCATGTTTTTAT-AGTCTCCCATATATAGGA AATTAAATTTGTTTTTCTCCTGTTAA--TGTTTTATGTC-AATTTAATTATTAGACCAGACAAAGAACTTACAAGAAGGG AAGGGAAAAGTTATCCACCCCTACA---GTTT---ATTGATATGTTATTGTTTATTCCGTTTCTGGGTTTAACTTTAGGA ACTTA >Equus_caballus CTTT--GGGTACTGGAATATTTTTGGAAT-ATCTGTAAAACACGT-AATTTTTC-AGAACA---GTTC---TGAAAGGGA GCAGAATATGCCA-CCCCAAAATACGCCTCTTTGGCATATTGATTATTCTGAATTAAAGTTACTTAGGAAACAGCCAATG CAAGAAGGACACTCTGG-CCTCCTTTGTCGCCCTGAAAACAGGAAATAAATCTCCC-CGTGAAAGCTACCCTCCCTGTAC CAGGAGGGTAT-AGGTA-TCCTATCAC-AGAGAGAGGGAATTTAGGGCAGAGAAGGCTGTGTAAACAAATCTTGTTACTT CCTCACTAATTTATTACCCCAAGCTCAAACTTCTTTGTTTTGTCAATTCTTCACAAATGTATTGTTTC------------ ----------------------------TTTGTTTTAAAGGCAT------------------------------------ -----AAAAGCTGCTTGATTTGG-----------TCATTTCTTTGAGTTCCATATTTTTAT-CTGCTCCTGTACATACAA AATTAAATTTGTTTTTCTCCTTTCATTATGTTTTATGTC-AGTTTTATTATTAGACCAGCCAAAGAACCTAGAAGGGAAG AAGGGAAAAGTGTCCTGCCCCTACA---GTTT---ATTGGTATATTATTCTTTACTTAATTTATGGGTTTAGTTCCAGGA ACTTA >Ceratotherium_simum CTTT--GGGTACTGAAATATTTTTGGAAT-ATCTGTAAAACACAT-AGTTTTTC-AGAATA---GTTC---TGAAAGGGA GCAGATTATGCCG-CCCCAAAATATGCTACTTTGGCATATTGACTATTTTGAATTAAAGTTACTTAAGAAACAGCCAATG CAAGAAGGACAC----ACCCTTCTTTGTCCCCCTGAAAGCAGGAAATAAATCTCCC-TGTGAAAGGAATCCTCCCTGTAC CTGGAGGGTAGAAGGCA-CCCTATCACTAGAGATAGGGAATTTAGGGCAGAGAAGGCTGTATAAACAAACCTTGTTACTT CCTCACTAATTTACTACTCCAAGCTCCAACTTCTTTGTCTTGTCAATTCTTCATAAATTCATTGTTTC------------ ----------------------------TTTGTCTAAAAGGTAT------------------------------------ -----AAGAGCTGCTTGCTTTGG-----------TCATTTCTCTGAGTCTCATATTTTTAT-GGGCTCCCATACATACAA AATTAAATTTGTTTTTCTCCTGCTGAGCTGTCTTATGTC-AATTTAATTATCAGACCAGCCAAAGAACCTAGAGGGGAAG AAGGGAAAAGTTTTCTGCCCCTACA---GTTT---ATTGGTATATTATTATTAACTCAATTTGTAAGTTTAGTTCCAGGA ACTTA >Sus_scrofa ATTT--GGGTACTGAAAA--TTTTGGGAT-ATCTGTAAAACATAC-AGTTTTCC-AGGACA------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------GTTC---ATTACTCTATTATTCTTTACTCAATTTATAGGTTTAGTTCTGAGA ACTTA >Bos_taurus CCTT--AGGCACTAAAAT--TTTAGGGAT-ATTTGTAAAACACATGAGTATTTT-AGAAC-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------ATTC---ATTGCTATATGA----TTACTTAATTTATGAATTTAGTTCTAGGA ACTTA >Myotis_myotis CTTT--TGGAACTGAAGTACTTTTGG---------------ACAT-AGTTTTTC-AGAAAA------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------GCTC---ATTCTTATATTACTATTTACTCAATTTATGGATTTAGTTCCAGGA ACTCA >Rousettus_aegyptiacus CTTTGGGGGGACAGAAATATTTTTGTAAT-CTCTGTAAAACACAT-AGTTTCTC-AGAAAA------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------ACTC---ATTGCTACAATATTATCTACTCACTTTATTGGTTTAGTTCCAGGA TGTTA >Condylura_cristata CATT--GGGGACTCAAATGTTACTGGAAT-TTCTGTAAAACACAT-CATTTTTT-GGAACA------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------GTTC---A-TAGTACATTATTATTTACTTAATTTATAGGTTTAACTACAGGA ACTTC >Sorex_araneus TCC-------------ATTTTTTAAAAATAATCTGTAAAACACAT-AGTTTTT--AGAATA------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------GTTC---ATTAACATATTATTATTTACTTAATTTTTGAGATTTGTTTTGGGA ATTTG >Homo_sapiens CTTTGGGATAAGTGAAATATTTTTGGAAT-ATCTCTAAAACACCT-AGCTTTTC-AGAATA------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------GTTC---ACTGATAAATAATTATTTACTCAATTTACATGTTTACTTCCAGCA ACTTA Horse14_LINE >L1MA9_3END -------------------------------------------------------------------------------- ------------------------------ACACACAAAAAAATGGTAACTATGTGAGGTGATGGATATGTTAATTAGCT TGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTT GTCAATTATACCTCAATAAAGCTGGAAAAA-------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------- >Sus_scrofa TGTGGGCTAAAGA-----------CAGTCACCAGCAAGTATGTGGCTTTGAGTATGAAGCCATGGCTATAAAA-GAGTGT GA--------------GAAGAGAGTTC---------------------CCAACAAGTGCTGACGG--ATGTTAACTAGAC TTAGCGCCGTGATCCTTTCACAATGTATACAAATATCATATCATAACATTACATGCCTGAAACTAATATAA-TGTTATGT GTCAATTATATTTCAAT-TAAAAAAAAAAGAGTGAATGATTCAAGGCATA-CATC--AATGCAGACCAATGAGAGCAAGC AGAATTTTTCTGTGGACCTTTGGGAAAGTTTGAACTTGGTAAAGAAAAAGAAAAAAAATAGAAAGAGGAGTTCCCGTCGT GGCGCAGTGGTTAACGAATCCGACTAGGAACCATGAGGTTGCGGGTTTGGTCCCTACCCTTGCTCAGTGGGTTAACGATC CAGCGTTGCCGAGAACTGTGGTGTAGGTTGCAGACGCGGCTCGGATCCCGTGTTGCTGTGGCTCTGGCATAGGCCAGTGT CTACAGCTCCGATTGGACCCCTAGCCTGGGAACCTCCATATGCCGTGGGAACGGCCCAAAGAAATAGCAAAAAGACAAAA AAAAAAAAAAAAAAAAGAAAGAAA---ACATGAAGAGAG---TTC---AGAACAGAGGCAAACACTC-CAAGAACCGGCT GGATAATGGCACAGAAAGAAGCA >Bos_taurus TGTGGACTAAAGACATACATTTGACAGTAACCAGTGCATACAGGTTATT-----TGAAGCTCTGGCTATAAAA-GAATGT GAAAA-TAC---AAGAGAAGAGAGTTC---------------------TCAACAAGAGATGGTGG--GTGTTAACTAGAC ATACTGTGGAGATCATTCCACGGTGTACACAAATATTGAATAATTACATTG-ATACCTGAAACTAATATAA-TATCATAT GTCAATTACACCTCAATTTTTAAACAAAAAAGTGAATGAGTCAAGGCATATTATCTTAATTCAGACCAATGAGAAGGCAC AGAATTTTTCTGTTAACTTCTGGGAAAGTTTGATCTTGCTTAAAAAAAAA------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------AAGAGAAGAAGGTGGTTC---AGATCAGAG----ACACTCTTAACAACTGGCT GGGCAGAGGCAGAGGAAGAAGCA >Equus_caballus TGTAGGCTAAAGACATACATTCAACAGTGCCCAGCATGTAGAGGTTATT-----GGAAGCCATGGCTATAGAA-GAATGT GAGGA-CAC---AAGAGAAGAGGGTTC----------------TCTTCTCAAGAAGAGTTGACGA--ATGTTAACT-GAA TTATTGTGGTGATCATTTCACAACGTGTACAAATGTCAAATCGCTATGCTGCACATCTGAAACTAACATA--TGTTATAT GTCAACTATACCTCAATTT---AAAAAAATAGTGAATGATTCAAGACATA-TATCTTAATTCAGACCAATGAGAGCAAGC AGAATTTTTCTGTGCACTTCTGGGAAAGTTTGACTATGCCAAAAAAAAA------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------AAGAGAA--------TTC---AGATCAGAGATAAGCACTC-CAACGACTGATT GGATAGAAGCAGAGGAATAAGCA >Ceratotherium_simum TGTGGGCTAAAAACATACACTCAACAGTCACCAGTATGTACAGGTTATT-----GGAAGCCCCGGTTACAGAA-GAATGT GAGGATTAC---AAGAGAAGAGGGTCT----------------TCTTCTCAACAAGAGTTGACAA--GTGTTAAC-AGAC TTATTGTGGTGATCATTTTGCAATGTATACAAATATCAAATCATTACGTTGTATACCAGAAATTAATATAA------TAT GTCAATTATACCTCAATTTAAAAAAAAAAGGGTGAATGATTCAAGGCATA-TATCTTAATTCAGACCAATGAGAGCAAGC AGAATTTTCCTGTCCACTTCTGGGCAAGTTTAAGCTTGCCAAAAAAAG-------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------AAGAGAA--------TTC---AGATCAGAGATAAACACTC-CAACAACTGATT GGATAGAGGCAGAGGAACAAGCA >Canis_familiaris TGGAGGCTACAGAC--ACACTTGACTGTCACCAGCATATACAGGTCATG-----GGAAGCCATGGCTATAAAA-GAATGT GAGGA-TAT----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------AAGAGAAGAGGG---TTC---AGATCAGAGACAAACACTC-TAGCAACTGGTT TTACAGAGGTAGAGGAACAAGCA >Felis_catus TGTAGGCTAAAGACATACACTCGACAGTCACCAGCATATACAGGTGATG-----GGAAGCCGTGGCTATAAAA-GAATGT GAGGC-TAC----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------AAGAGAAGAGGG---TTC---AGCTCAGAGACAAACACTC-TAACAACTGGTT GTATAGAGGCAGAGGGACAAGCA >Manis_javanica TGTAG----------------------TCACCGGCACATATAGGTTATT-----GGAAGCCATGGCTAAATAAAAGATGT GAGGA-TGC----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------AAGAGGAGGAGG---TTC---GGACCAGAG----GCACTC-TAACAGCTGG-T GCGCAGAGGCAGAGGAACAAGAG >Myotis_myotis GGTAGACTAAAGACAAACATGAGACAGTAACCAGCACATACAGGTT-TT-----GGAAGCCATGGCTATAAAA-TAATGT GAGGA-TAC----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------AAAA-ATAAGGG---TTC---AGATCAGAGACAAATACTCTTAACACCTGGTT AGATAGAGACAGAGGAACAAGCA >Rousettus_aegyptiacus TGTAGGATAAAGATAAACATTTGACAGTCACCAGCATATACAAGTTATT-----GAAAGCCATGGCGATAAAA-GAATGT GAGGA-TAC----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------AGAATATGAGAG---TTC---AGATCAGAGA-AAATATTTTT---AATTGGTG CAATAGAAACAGAGGAAGAAGCT >Condylura_cristata AGTAGGCTAAAGGCA--CATTTG----------------ATAAGTAACT-----GGAAAGCATGCC--------AAATGT GAGGA-GAC----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------AAGAGAAGAG-----TTC---AGCACAGAAGCAAACGCTCTC-GCAAGTGGCT GGA-----------GAACAAGCA >Uropsilus_gracilis TGTAGGCTAACGACATACATTTG----------------ATAAGTTATT-----GGAAGCCATGGCTGTAAAATAAATGT GATGC-CAC----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------AAGATAAAAGAG----TC---AGTGCAGACACATACACTCTC-AAAAGTGGTT GGGCAGAAGCAGAAGAACAAGCA >Homo_sapiens TATGAACTAGAGAAATCCCTATGATAGTCACCAGCATATACAAGTTATT-----TGAAGCCATAGCTATAGAA-GGACAT GAGGG-TAC----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------AAGAGAACTGAG---TTC---AGATGAGAGATAAA------------------ --------------GAGTGAGAA Horse14_LTR >LTR21B1_EC ------------------------------------------------------------------TGGT------ACC- -CAATTCCAATGTGTG--TGTGGAG--TTTTTCCCCACACCACCAAGCAATTCTCCGACACCAG-CTGGGTGTCCTACAA TTCAACTCAATTCTGACACTATCTACCTGGAG----ATAGCATCAGATCCCACAGGTTAAGGGCTCAGTCCTACAAGA-- --CCTGTCCCCACCCCCCACTTCAGACGCCAATCGCAAGTCCAGGTTGTCACCTGTGCTTCTGACCGACTGGCTATAGAT CGGAGGTTCCAACGACCCCCTCCTTGGGTTCGATTAATTTGCTAGAGCGGCTC----ACAGAACTCAGAGAAACATTTTA CTTACTAGATTACCGGTTTATTATAAAAGGATATAACTCAGGAACAGCCAGATGGAAGAGATGCATAGGGCAAGGTATGT GGGAAGGGGCGCAGAGCTTCCATGCCCTCTCCGGGCGCGCCACTCTCCCCGAATCTCCACGTGTTCACCAACCCGGAAGC TCTCCGAACCCCGTCCTTTTGGGTTTTTATGGAGGCTTCATTACATAGGCATGATTGATTAAATCATTGGCCATTGGTGA TTGATCTCAACCTCCAGCCCCTCTCCCCTCCCCGGAGGTCGGGGTGGG---ACTGAAAGTTCCAACCCTCTAATCACATG GTTGGTTCCCCTGGCAACCAGCCCCCATCCTTAGGTGCTTTCCAAAAGTCACCTCATTAACATAACAAAAGACACCTTTA TCGCTCTCATCACTTAGGAAATTCCAAGGGTTTTAGGAGC--------TCTGTGCCAGAAACGGAGC-AAAGACCAAATA TATATTTCTTATTATAAATCACAATATCACA------------------------------------------------- -------------- >Equus_caballus ATGTGGATTCCAGAACAGGTGGAGGTGGACC-TGAAGATGGACAGGAATTA---GATGTTA---AACGGTTCTAGTACCT AATATTCCAGTGTGTG--TGTGCAGTG-GTTTCC--ACACTGCCAGGCATTTCTCAGACACCAACCTGGATGTCCTACAA TTCACTTCCATTCTGACACT-TCTACCTAGA----GATAGCATCAGATTCCACAGGTTACAGACTCAGTCCCACAAGACT GACCTCCCCCCA------CCTTCAGACGCCAATCGCAAGTCGGGGTTGTTACCTGTGCTTCTGACAGACATGCTAAAGAT GGGAGA----AACAACTCACTTTGGGGATTCTGTTAATTTGCTTGAGCAAATCTAGAACAGAACTCAGAGAAACATTTTA CTTACTAGATCACTGGTTTATTATCAAAGGATCTAACTCAAGAGAAGCCAGATGGAAGAGCTGCAGAGGGCAGGGTGTA- CGGAAAGGGCGAGGAGCTTCCAGG--CCCTCTGAGCTCGCCAGTCTTA--AAATCTCAGTGTGTTCACCAACCGGGAAGC TCTCCAAACTCCATCCTTTTGGGTTTTTACCAAGGCTTCATTACAGGA---------------------------TGTGG TTGAACTCAATCTCCATCCCC-CATGGGTCCCCAG-GGTCA----GGGTGGGACTGAAGTTCCAACCCTCTAATCATACA GTTGGTTCTCCTGGCAGCCAGTCCTC--CTTTAGGGACATTCCAAAAGTTGCCTCATTAACGTAACAAAAGACTCTTTGA TTGCTCTCATCTCTTAGGAAATTCCAAGGGTTTTAGGAGCCCTGTGCTCCTGTGCTAGAAACGGGGCTGAAGACCAAATA TATATTTCTTATGATAAATCACAATATCACA---GATGTGA---AACAGGAATTGGACAGGAATGAGAACTATGTAAGTT CCCTTTTCAGCAAT >Tapirus_indicus ATGTGGATTCCAGAACAGGTGGAGGTGGACC-CAGAGGTAGGCGGGAATTG---GATGTTG---CATGTTTCTACTATC- --AGTTCCAGTGTGTG--TGTGCAGGG-GCTTCC--ACACCACCAAGCATTTCTCAGACACTAG-CTGGGTGTCCTACAA TTCAACTCAATTCTGACACTAGATACCAGGA----GATAACATCAGATTCCACAGGTTAAGGGCTAAGTCCTACAAGACT GACC-ACTCCCA------CCTTCAGATGCCCATTGCAAGTCCAGGTGGTTACCTATACTTCTGACAGACAGGCTATAGAT GGGAGGTTCCAACAACTCCCTTTTGGGATTCTGTTAATTTGCTAGAGCAAATCTAGAACAGAACTCAGAGAAACATTTTA CTCACTAGATC-CTGGTTTATTATGAAAGGATATAGCTCAGCAACAGGCAGATGGAAGAGATGCATAGGGCAAGGTAAG- GCTAAAGGCCAAGAATCAGTCAGGGTCCAATCAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNN >Myotis_myotis CTGTGTATTCCAAAACAGGTAGGGGTGGACCCTAGAGGTAGACAGGAATTG---GATATGA---AATGGTTCTAGTATC- --AATTCCAGTGTGTG--TGTGCAGGGTTTTTCC--ACACCACCACGCAATTCTTGGATACCAC-TTCTGTGTCCT--AG TTCAAATCTATTCTGACACTATCTACCCAGA----GATAATGTCAGGTTTCACAGGTTAAGGGCTCAGTTCTACAAGACT GC--TGTCCTAA----------------------------------AACCACCTGTGCTTCT----GAGAGGTTATAGAT TGGGGGCTCCAAAGACTCCCTCCTTGGGTTTGATTAATTTGTTAGAGCATCTC----ACAGAACTCAGAGAAACATTTTA CTTCTGAGATTGTTGGTTTATTATGAGAGGATA-----CAGGAACAGTTCAATGGA--AGATGCATTGGGCAAGGTACA- GGGCAAGACCAAAGAGCTTCCATGCCCTCTGCAGCTGTGCCATTCTCCCTGAATCTCTATGTGTCCACCAACCTGGAAAC TCTCTGAACTCAGTCCTTTAGGATTTTTATGGAGGCTCCATTACATAGGCACAATTGATGAGATCA-------------- TTCAACTCACTCTCCAGTCCC-TATCCCCTTTCTG-GCAAATTATTGTATCACTGCAAGGTTCCAACCTCAAATTACATG GTTTGCCTCACTGGCAACCAG-CCCCATCCTTAAGTGCTTTCTAAAAACTACCTCATTAACATAACAAAAGACACCTTTG TTGCCCTTTTCACTTAGGAAAATTCAAGAGTTTTAGGAGC--------TCTGTGCCAGAAAC-AAGATGAAAAAC-AATA TATATTTCTTATTATAAAACATAATGTCATA---GATGTAG---AGCAGGAATTGGATAGGAATGAGAGTTACGTAATTT CCCTTTTCAGCAAT >Rousettus_aegyptiacus CTGTGGATTCCAGAATAGGTGTAGGTGAA-------------TAGGAATTG---AATGTTA---AATGGTTCTAATATC- --AATTCTAGTGTGTGTCTGAGCAGGG-TTTTTT--ACACTACCAACTGTTTCTTGGACACCAG-CTATGCTTCCTGCAA TTCAACTCAATTTTAACACTATCTACCCAGAGATGGATAGTATCAGATTCTGCAGATTAAGGGTTCAGTCCTATGAGACT GC----------------CCTTAAGACACAGTAGGAAATCCAAGTTAGTCACCTGTACTTCTAACCAACAGGCTATAGAT TGAGAGTTCCAAAGATCCCCTCATTGGGTTTGATTAATTTGTTAGAGCATCTC----ACCGAATTCAGAGAAGCATTT-- --------ATTACTGGTTCATTATGAAAGGATA-----CAGAAACAGCTCGATGGA--AGATGCATAGGGCAAAGTACA- GGGAAAGACC------------TGTACCCTCCAGGTATACCACTCTCCCCAAATTTCAG-GTGTTCACCAGCCTAAAAGT TCTCTAAATCCTGTCCTTTATAACTTTTATGGAGGCTTCATCACATAGGCATGATTGGTTAAATCATTGGCCGTCGGTAG TCGAACTCAATCGCTAGCCC----------------------------------------TTCTCACATCTCATTACATG GTTGCCGCCATTGGCAATGAGCCCCCATTCTTAGATGTTTTCT--AAATCACCTCATTAACATAACAAAAGACACTTGCG TTGCTCTT-TCACATAGGAAATTCCAAGGAGTTTAGGAGC--------TCTATGCCAGAAAC-AAAATGAAGACCAAATA TATATTTCTTAATATAAATCATAATATCACA---GATGTGG---AGCAGGAATTAGAAAGGAATGAGAGTTAGGAAAAAT CCCCTTTCAGCAAT >Canis_familiaris ATGCGGATTTCAGAAGAGGTAGACATAGA-------------CAGGAATTA---GATGTGG------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------AACAAGACTTAGTCAAGAATGGGAACTATGTAAGTT TGCTCCTCAGCATT >Felis_catus ATGTGGATTTCAGAATAGGTAGACATAGA-------------CAGGAATTG---GATGTGG------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------AGCAAGTATTGGTCAAGAAGGGGAGCTATGTCAGTT CCCTTCTTGGCAAC >Manis_pentadactyla ATGTGGATTCCAGAACAGATGGAGGTAGACC-TGAAGGTGGCTAGGAATTA---GATGTGA------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------AGCAGGAAACGGACAAGAATGGAAACCATCTAAGTT CCCTTTTCAGCAGT >Sus_scrofa ATGTGGATCCTAGAACAGGTGGAGGTGGACC-TTGGGGTGGACAATATTTG---GATGTGA------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------AGCAGGCATTGGACAA-AGTAGAAACTATGTAAGTT CCCTTTTCAGCAGT >Bos_taurus ATGTGGGTTCCAGGATAGGTGGAGGGGGATC-TGGGAGTAGAGAAGAAATG---GATATGG------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------AACAGGAATTGGGCAG-AATGGAA-TTATGTAAATT TGCTTTCCAGCAGT >Condylura_cristata GTGTAGAGTTCAGTATAGGTAGATGTGAA--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------CAGAAACTGCATAGTAGTGGGAAGTAGGTAAGGT CCTTTTTCAATATT >Sorex_araneus ATGTGGTCTCCGTAATAGGTGAAACAAGAG--TAAAAGTGAGCAGGAATTG---GCTGAGG------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------ATCAGAAATTGTGCAAAAATCGCAATACATTGAGTT TCTTTTACGACCAA >Homo_sapiens ATATAGATTTTATGAGAGGTGGAGTTACACC-TGGAGGTGGACATGAATTG---TATGCTT------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------AAGAAGAACTAAGCAGGAATGAGAACTATGAAAGTT TTCCTTTAAAC-TT Horse15_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------TCACCACACACAAAAAAATGGTAACTATGTGAGGTGATGGAT--ATGTTAATTAGCTTGATTGTGGTAATCAT TTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAA---ATATATACAATTTTTATTTGTCAATTATACCT CAATAAAGCT--------GGAAAAA------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------- >SINEC_Fc2 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------GGGGCGCCTGGGTGGCTCAGTCGGTTAA GCGTCCGAC-------TTCGGCTCAGGTCATGATCTCGCGGTTCGTGAGTTCGAGCCCCGCGTCGGGCTCTGTGCTGACA GCTCAGAGCCTGGAGCCTGCTTCGGATTCTGTGTCTCCCTCTCTCTCTGCCCCTCCCCCGCTCACGCTCTGTCTCTCTCT CTCTCAAAAATAAATAAACGTTAAAAAAAAAATTAAAAAAAAAA------------------------------------ -------------------------------------------------------- >Sus_scrofa TCCTTTAAAGCTAAAATTAATAAT-ATAGATAATTGCATTTAGAGGTCTAAGAAAATTCTATGT-GAAA---AGA-TT-- -------------------------CTGTAACTAGGTATGGT----GAAGAAAGTTAAGCAGATCTATTGCCATGGTTAT TTTTCATTACATACCAATATCAAATTATCGTGTTATATAGACAAAGT----AATATAG-TATTGCATGTCAATCATACAT GAATAAAAAAATTTT----------------TTGA---AGACTGCCTAA------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----AATGAAATATATAAAAGTAATTTC-ATTTAGAACTGAGATGCCAGGTGATTT >Bos_taurus TCCTCAAGGGCGAAAATTAACAAT-GCAGATGATTGTATTGAGAGGACAGAGGTAATTTTATGT-GGAA---AGA-TTGC CTGG-------------------TTCTGTAACTCCGTATGGTG--GGACAAATGTTAACTAGACTTACTGTCATGATCAT TTTGCCATATATACAAGTATCAAATCATTATGTTGTACACCAGAAAG--------TAA-TATAATATGTCAATTATACCT CAACTTACAAATTTT-------------------T---AGGTTGTCTAA------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----AATGAAATATACAAAAATAATCTC--TTT-GGAGTAAGA-CTCAGGTCATTT >Equus_caballus TCTTTAAGGGCTAAAATTAACAAT-ACAGAAAACTGCACTTAGAGGACAGAGAACATTCTACGT-AAAA---AGA-TTGC CTGA-------------------TTCTCTAACTATGTATGGC----AATGGATGTTAGCTGGACTTAATGTGGTGATCAT TTCGCAATATATACAAATATCAAATCATTATGTTGAACACCAGAAACAAGAAAT---A-TGTTGTATGTCAATTACACCC CAATAAAACTTTT--------AAAAAAGCAAAAGA---AGATTGCCTGA------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----AATGAAATATACAAAAGTAATCTC-TTTTGGGAGTGAGATCCCAGGTGATTT >Ceratotherium_simum TCCTTAAGGGCTAAAATTAACAAT-ACAGAAAACTGCATTTAGAGGACAGAGAACATTCTATGT-AAAA---AGA-TTGC CTGA-------------------TTCTGTAACTATGTATGGC----AATGGATGTTAGCTAGACTTAATGTGGTAATCAT TTTGCAATATATACAAATATTGAATCATTATGTTGTACACCAGAAACCAGAAAGATAA-TGTTGTATGTCAATTATACCT CAATAAAACTTTTTTAAAAGAAAAAAAAAAAAAAA---AGATTGCCTGA------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----AATGAAATATACAAAAGTAATCTC-TTTTAGGAGTAGGACCCCAGGGGATTT >Canis_familiaris TCCTTATGGGCAAAAATAAACAATTACAGAT-ACGGAATTTAGAAGATAGAAAA--TTCTATGT-AAAA---AAA-TTAC CTGA---------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----AATGAAATACATAAAAGTAGCCTCTTTTTAGGAGTGTGACCCCAGGTGATTT >Felis_catus TCCTTAAAGGCAAAAATTAACAAT-ACAGAT-ACTGCATTTAGAGAACAGAGAAAATTCTGTTAAAAAA---AAATTTGC CCGA---------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------GGGGCACCTGGGTGTCTCAGTTGGTTGA GAGTCCAATTCTTGGTTTCAGCTCAGGTCATGATCTCACAGTTCGTGAGCCTGAGCCCCACATTGGGCTCTGTGCTGACA G-------TGTGGGGCCTGCTTGGGATT----------CTCTCTCTCTGCCCCTCCCCTGCTCATGCTCTG----TTTCT CTCTCAAATTAGGTACACTTAACTAAAATAAAATAAAATAAAATAAAATTAAATTAAATTAAATTAAATTAAAATGCCTG A---AATGAAATATACAAAAGGAATCTC-TCTTAAGAGTGGGACCCCAGGTGATTT >Manis_pentadactyla TCCCCAAAGGCTAAAATTAACAAT-ACAGAGAATTGCATGTAGAGACCAGAGAAAGTTCTACATTTTAA---AAA-TTGC CTGA---------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----AATGAAATAT-CAAAAGTAATCTC-TT--GAGAG---GATCTGAGCAGACAC >Myotis_myotis TCTTTAAGGACTAAAATTAACAAT-ATAGTTAATTATATTTAGAGGACAGAGAAAATTCTATGT---AA---AAA-TTGC TTGA---------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----AACGAAATATACAAAAGTAATCTC-TTTTCAAAGTAGGATTCCAGGAGATTT >Rousettus_aegyptiacus TCCTTAAGAGCTAAAATGAACAAT-ATAAATAACTGCATTTAGAGAGCAGAAAAAATTCTATGT---TA---AAA-TTGC CTGA---------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----AATGAAATACACAAAAGTAATCTC-TTTTAGGAGTAGGATGCCAGGTGATTT >Condylura_cristata TTCTTAAGGACTAGAACAAACAAT-ACAGGTAATTGTATTTAGA---TAGAAAAAATTCGATAT-AAAA---TGA-TTGC CTGA---------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----AATGAAATACCTGAAAGTAATCTT-TTTTAGAAG---AATCTCAGCTGATTT >Uropsilus_gracilis TCCTAA---------------------------CTGCATTTAGAGAG-AGAAAA--TCCTATATAAAAA---AGA-TTGG CTGA---------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----AATGAAATACATGAACATAATCTC-CTATAGAAG---AACCTCAGGTGATTT >Galeopterus_variegatus TCCTTAATGGCTAAAACTAATGAT-GCACATAATTGCATTTTGAGAACAGAGAAAA--CTAT------A---CCA-TTCC CTGA---------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----AATGAAATATGCAAAAGTA-TCTC-TTTTAGGAG------------TGACTT Horse17_LTR >ERV1-4N-EC_LTR -------------------------------------------------------------------TGAAGGGGTTCAG AACAGGCCTCCCCAAGATGTGCCACTTTGGCATGTGGAATATTTTGAGCTAAAGGCAATCNAGA-CCCTGTGGGCTCAAG AGAAACTTTT-ACCTCTCCCTTAA---------AGAATTTAAATTGGGGGCCTTGCCCATAATAAGAGTTATTACCAGAA ATAAATTTTTAT--------GACCTATCTGTATGGCAGGGCAAACCTCTAATTACTGAACATCTGCTCTTCTTATCATCC TGTGAATTACCCTCCTCCCCTCTGAAGCCTCAGGCCCCTATC--CCATTCCTTAGCTCAAGATGGCATATATACCTCATT TTACCTTTTTGTCTCTGAACCTCTCATGTATGTGGGGTCTCTGACTCTCTCATGTATGTGGGGTTCCCGTATNTATGNAA TTAAATTTGATTTTCTCCTGTTAATCTGTCTCATGTCAATTTAATTCTTAGACCAGCCAGAAGAACCTAGAAGGGTAG-A GGAAAATTTCTTCCTCCCCCACA--------------------------------------------------------- ---------------------- >Equus_caballus GAGATATTTCACTGTACTTGA--GGCATGAGC-----TTCAGATCCCTTCTGCCTGG---ACTG---TGAGAGGGAGCAG AATACACCACCCCAGCACGTGCCACTTTGGCATGTGGATTATTCTGAGCTGAAGACAATCTGGGGCCCAGCAGACTCAGG AAGAGCTTTTGACCTCCCTCTTAATTGACTAAAAGAATTTAGATGGGGGGCCTGTAGCAGGAAGAGAGCTGTTATCAGAG ATAGCTTTTTATGTCAGAAAGACTCATCTGCGTGGCAGGGCAGACACTTGTTTACCCAACGTTCGCTCTTCTCATCTTCC TGTGAATCATCTCCCTCTGCTTTGAAACC-CAGATCACTA-CATCTTCTCCTTAGTTCAGGATGGTGTATAAGCTTCA-G TTACTTGACCG-CCACG-------------------------GAGTCTCATACTTTTATGGGGCTTCCATACATATG--- --AAATTTGTTTTTCTCCTATTAATCTGTCTTTTGTCAACTTAATTATTAGACCAGCCA-AAGAACTTAAAAGGGAAGAA GGGAAAAGTTTTCTGCCCCTATA---ACT-G---TAACGG----TATTCTCTGAGT----TAAAAAAGAAT--TACT--- ---ATACTATCCTTACCTTAAG >Ceratotherium_simum GAGACATTTCACTGTACTTGC--TGCGTGATC-----TTCAGATCCCTTCTCCCTGG---ACTA---TGAGAGGGAGCAG AATATGCCACCCCAG-ATGCGCCATTTTGGCATGTGGATTATTTTGAGCTGAAGACAATCTGGGGCCCAGCAGATTCAGG AAGAGATTTTTACCTCCCCATTAACTGACTAAAAGAATTTAGATAGGGGGCCTGTACCAGGAACAGAGCCATTGCCAGAT ATAAAAAGTTATATCAGAAAGACTTATCTGCTTGGCAAGGCAAACATTTGTTTACCAAACTTTTGCTCTTCTCATCTTCC TGTGAATTGTCTTCCTCCCCTTTGAAGCCCCAGATCCCTACCATCCTCTCCTTGGTTCAGGATGGCATATAAGTCTCA-C TTACCTGACTG-CCAGG-------------------------GAGTCTCATATTTTTATG-GGCTTCCATAAGTATG--- --AAATTTGTTTTTCTCCTCACAATCTGTCTTATGTCAATTTAATTATTAGACCAGCCA-AAGAACCTAGAAGGGAAGAA GGGAAAAGTTTTCTGCCCCTCCA---ACT-G---TAACTG----TACTCTCTGAGA----TAAAAAAGAAT--TACT--- ---AATCTATGTTTACCTTAAA >Myotis_myotis AAGATATTTCACTGCCCTTC---TGCATGATC-----CTCAGATCTCTTCTGATTGA---ACTG---TGAGGAGGAGGAG AGTATAACACCCAAA----------------AGGTGGATTATTTGGAACTGAAGACAAAATGGG---CTGCAAACTCATG AAGAGTTTTTAATCTCC---TTAACTTCCTAA---AGCCTTGAGCGGTGGCCTGCACAAGGAAGACAGCTATCACCAGAG ATAAA-GTTTAGGTCAGAAAGACTTAGCTATATGGCCTGGCCAG-ATCTGTTTACCAAACCTCTGCTCTTCTCCTCATTC TGTGAATAGTCTTCCTTCCCTTTCAAACCCCAGAGCCCAACCTCCTTCTTCTGAGCTCAAGATGGCAGATAAGCCTCA-A TTACCTGACTGTCCAAA-------------------------GAGTCTCATGTTTTTATGCAGCTCTCATACACACT--- --ACATTTGTTTTTCTGATGTTAATCAGTTTCATGTCAATTTAATGATTAGA----CCA-AAGAACCTAGAATAGAAGAA GGGAAAAGTTTTCGGCCCCTACA---ATT-G---TAACTG----TATTCTCTGAGT--------GAAGAAT--TACT--- ---ATACAAAAAAA-----AAG >Rousettus_aegyptiacus GAGATATTTTACTGCACTTGC--TCTATGACC-----TTCAGATCCCTTTTTCCTGA---ATTG---CTTGA------AG AGTAGGACACCCCACAATGTGACACTTGGGCATGTGGATTATTTCAAACTGAAGAGAATCTAGTGCTCAGCAGACTCAGG AAGAGCTTTTTACCTCCTCCTTAACTACCAAAAATAA--TGGAGAGGGGACTTGCACTGTGAAGAAAGCTATTACCAGAG ATAACTTTTTACACCAGAAAGACTTATCTATACAGCACAGCAAACATTTGTTTATTAAACATGTGTTCTTCTCATCGTCC TGTGAATTGTCTCCCTCCCCTTTGAAGTCCC-------------TTTCTCCTTAGCTCAGGATAGTATTTAAGTCTCG-A TTACCTGACTT-GTCAG-------------------------GAG--TCATATTTTTATGAGGCTCTCATGTGTCTG--- --AAATTTGTTTTTATCCTGTTGATCTGTTTTATGTCAATTGAATTATTAGA----CCA-AAGAATCTA-----GAAGAA GGGGAAAGTTTTCGGCTCCTACA---ATT-G---TAGCTA----TACTTTTAACTT---------AAGAAG--TACT--- ---ATACTATTCTTACCTTAAG >Canis_familiaris GAGGTATTTCACCGCACTTGTTATATATGATC-----TTCGGATCCCTTCTACTTCG----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------ACTAA---AAACCT----TATTTTCTGAGT----TGAGAAAGAAA--GAGT--- ---GTCCTAGGTTTACTTTAAG >Felis_catus GAGGTATTTCACTACACTTGC--TGCATGA-C-----TTCAGACCCCTTCTACTTGG----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------ACT-C---TGCCCA----TACTTTCTGGGT----TAAGAAAGAAA--CAGA--- ---GTACTATGTTTACTTTAAG >Manis_pentadactyla GAGATAATTCACTATACCCAC--CAAATGATCTTCATTTCAGATCTCTTCTGCCTTC----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------AGT-G---TGACTAAGCTTCCTTTCTGAGTTAAGTAAGAAAGAAT--TACT--- ---GTACTACTTTTACCTCAAG >Sus_scrofa GATATATTTCACTGTACTTGC--TGTGTGGTC-----CTCATTTTCCTTTTGTCTAG----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------ACT-G---TAACTA----AACACTGTGAAT----TAGGAAAGAATACTACTAAA GAAATACTGCATTTACTTGATG >Bos_taurus GGGATATTTAACTGCACTTGC--TGTGTGATC-----TTGAGATCCATTCTGCCTAG----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------ACT-G---TAACTA----TATTTTCTGAAT----TAACAAAGGAT--TACC--- ---ATACTACATTTACCTTAAG >Condylura_cristata GAGATATCTTACTTAATTTGT--TACACCATC-----TTCAGATCCTTTCTGCCTAG----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------ACT-G---TAACTA----CAGTTTCTAAGT--------------------T--- ---ATACTACAATTATCTTAAA >Solenodon_paradoxus GAAATTTTTCACTGCAATTG---TTTATGATC-----TTCATTTCCATTCT-TCTAA----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------ATT-G---TAACAA----CACTTCCTGAGT----TAAGATAGAAT--TAAT--- ---TCATTACATTTATCTGAAG >Galeopterus_variegatus GAGATATTTTACTGCACATGC--TGTGTGGCC-----CTCAGATCCCATCTGTCCAG----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------ACT-G---TAAGTA----TGCTTTCTGAGA----CACAAAAGAAT--TAAT--- ---ACACTATATTTACCTTAAG Horse18_LTR >ERV1-4N-EC_LTR -------------------------------------------------------------TGTGGGGGAGGAAGAAATT TTCC--TCTACCCTTCTAGGTTCTTCTGGCTGGTCTAAGAATTAAATTGACATGAGACAGATTAACAGGAG-AAAATCAA ATTTAATTNCATANATACGGGAACCCCACATACATGAGAGAGTCAGAGACCCCACATACATGAGAGGTTCAGAGACAAAA AGGTAAAATGAGGTATATATGCCATCTTGAGCTAAGGA--ATGGGATAGGGGCCTGAGGCTTCAGAGGGGAGGAGGGTAA TTCACAGGATGATAAGAAGAGCAGATGTTCAGTAATTAGAGGTTTGCCCTGCCATACAGATAGGTC--------ATAAA- -AATTTATTTCTGGTAATAACTCTTATTATGGG------CAAGGCCCCCAATTTAAATTCTT------------------ ---------------------------------------TAAGGGAGAGGT-AAAAGTTTCTCTTGAGCCCACAGGGTCT NGATTGCCTTTAGCTCAAAATATTCCACATGCCAAAGTGGCACATCTTGGGGAGGCCTGTTCTGAACCCCTTCA------ ----------------------------------------------------------- >Canis_familiaris ATGTTCATAAGGATG---AATATCAGATAAAACTTCCTCTTCTGTCTGATG---TCGG---TCTAGGGGC---AAAACTC TTCCCTTC----------CATT-TGCTGGCCAGTATAATAATTAATTTGACATAGGACAGATTAACAGGAG-AAAA-CAA ATTTAATTATGTACATAG-----------------G-GGAGCCC-----CCACAAAGACATGA-AAACTCAAAATCAATC ATG-CATTTGAGGTTAAT-TAGAGTCCTGAGCTAAGGAGGAGAGACTAAGGGTCTGAGACTTCAAAGGAGAGGAAGACAA TTCACAGGGAGTTGAGAAGAGGAAAGGCACAGTCAACAAATACATGCCACACCAGGCAGGTAAGTCTTTCTGATATAAAT AACATTATCTCTGCTAATAGCTGTTTTCCTGG------TACAGGCTCCCTATCTGAGGTCTTTTAGGCAATTAAAGGAGA GGTAATAAACTAGAAAAAATTAAAAAATAAAATAAAAAATAAAGGAGAGGTAAAAAGTTTTTCTTGAGTCTGCTGGGTCT TCAGTGCCTTCATCTCAAAATAACCCACATACCAAAGCGATGCATTTCAGCATGGCACGTTCTGCTCCCCTTCA---TGG G---TGTGAAC-TCTGAGCAGAG--TTGGCGCTCATCAATATTGTGAGGAAGAGGTCAG >Felis_catus ATATCCGTAAGGATG---AACAC-------AAATTCCTCTTCTCTCTGACA---TAGA---TCTAGGGGC-AAAAAACTT TTCCCTTCTTCCATTCTACATT-TACTAGCTGGTGTAATAATTAAATTGACATAAGACAGAACAATAGGAG-AGAA-CAA AGTTAATGATGTACATAT-AGAG------------G-GGGGAGC-----CCACAAAGACATAA-AAACTCAAAGGCAATC AGT-CAATTGGGGCTTATGTACAGTCTTGAGCTAAGGAGGAGAAAGTAAAGGTCTGGAATTTCAAAGAAGAGGAAGACTA TTCAGGTGAAGATGAGAAGAGGAAATGCTTGGTAAACAGAGGTGTACCATGCCATACAGATAAGTCTT----------AT AAAGTTATCTCTGTTTATAACTGTCTTCCTGG------TACAGGCTCCCTATCTAAATCCTTTTAGGCAAT--------- ---------------------------------------TAAAGGAGAGGTAAAAAGTTTGTCTTGAGTCTGCTGGGTCT TCATTGCCTTCAGCTCAAAAGAACCTAAAGGCCAAAGTGATGGATCTCATCATGGCACACTTTGCTCCCTCTTG---TGG G---TTTTAACTTCTGAGCAGAG--TTGGTTCTCATCAGTACTATGATGATGAGGTCAA >Equus_caballus ATGTTCATAAGGGTG---AATATGAGACTGAAATTCCTCTTCTATCTGATA---CAGG---TATAGGGAC-AGAAAACTT TTCCTTTCTTCCCTTCTTGGTT-TGTTCTCTGGTCTAATAATCAAATTGATATAAGATAGATTAACAGGAGAAAAA-CAA AGTTATTTACATATGTAC-------------------AGGAGCC-----ACACAAAGACATGA-AGACTTGAAGGCAGTC AGG-CAATTGAGGCTTATATA---TCCTGAACTAAGGACAAGTGGGTAGCAGTCTGGAGCTTCAAAGGGGAGGAAGACAA T--ACAGGAAGATGAGAAGAACGAATGTTTGGTAAACAAATGTTTGCCATGACATGAAGATAAGTCTTTCTGAAAT--TA AAAGTTATTTCTGGTAATAGCACTTTTCTTGG------TACAGGCCCCCCATCTAAATTCTTTTGTGCAGT--------- ---------------------------------------TAAGGGAAAGGTAAAAA-CTTTTCCTGAGTCTGCTGGATCT TAATCACCTT-AGCACAAAATAATCCACATGCCAAAGTGGCACATTTTGGTGTGGTGCATTCTACTCCCCTTCA---TGG T---TTTTAGCTTCTGAGCAGAG--ATAGTGCTCATTAATACTGTGATGATGAG--CAG >Ceratotherium_simum ATGTTCATAAGGGTG---AATATCAGACTGAAATTCCTCTTGTATCTGATA---TGGG---TGTAGGGGT-AGAAAACTT TTCCCTTCTTCCCTTCTAGGTT-TATTGTCTGGTCTAATAATTAAATTGATATAAAATAGATTAACAGGAGAAAAA-CAA ATTTAATTACATATGTAC-------------------GGGAGCT-----CCACAAAGACATGA-AGACTCAAAGACAGTC AGG-AAATTGAGGCTTATATA---TCCTGAGCTAAGGAGAAGTGGGTATGGGTCTGGGGCTTCAAAGGGGAGGAAAACAA TTCACAGGAAGATGAGAAGAGCAAACGTTTGGTAAACAAATATTTGCCACGACATGCAGATAAGTCTTTCTGATAT--AA AAAGTTATTTCTGGTAACAGCACTTTCCCAGGGGTTTAGATAGGCTCCCTATCTAAATTCTTTTATTCAGT--------- ---------------------------------------TAAGGGAGAGATTAAAA-CATTTTCTGAATCTGCTGGGTCT TAATTGCCTTCAGCACAAAATAATCCACATGCCACAGTGGCACATTTTGT-GTGGCAAATTCTGCTGCCCTTCA---TGG A---TTTTAGCTTCTGAGCAGAG--ATGGTGCTCATTAATACTGTGAGGATGG---CAG >Sus_scrofa ATGTTCATAAAGGTGAATAATATCAGACCAAAATTCCTCTTCTATTTGATA----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------CAG G---TTTTAACTTCTGAGCCCAT--TTGGTGCACATGAATACGATCATGATGAAGACAG >Tursiops_truncatus GTGTTCATAAAGGTG---AACATCAGACTAAAATTCCTCTTCTATCTGATA----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------CGG G---TTTTAACTTCTGAGCAGAG--TTGGTGCTCATCAATACCATAATGATGAAGACAG >Myotis_myotis AAGTTCATAAGCTTG---AATATCAGACTGAAATTTATCTTCTCTCTAATA----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------TGG A---TTGTAGCTTCTATACAGAT--TTGGCGCTCAC---TACTGGGAATATAAAGACTG >Rousettus_aegyptiacus ATGTTCATAAAGTTG---GTTATCAGACTGATATT-----TCTATCTGATA----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------TGG A---TTTTAGCTTCTGAGCTGAG--TTGGTGCTAATCAATACTGGAATGATAAGGACTG >Condylura_cristata AAATTCCTAAGAGTG---AATTTCAGACTGAAATTCCCTTTCTATCTGGAA----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------TGG A---TTTTAGCTT-TGAACTGAG--TTGATGTTCATCAAAACTATGATGATAAAAACAG >Scalopus_aquaticus ATGTTCATAAGGGTG---AATTTCAGACTGAAATTCCTTTTCTATCTGAAA----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------TGG A---TTTTAGCTTCTGAACTGAG--TTGGTATTCATCAAAACTATGATGATAAAGACAG >Homo_sapiens ATGTTCTTAAGGGCA---AATAGTTGACTGAAATTTTTCTTGTATGTGATA----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------TGG G---TTTTAGCTTCTGAGCAGACACTTGACACTCATCAGTGTTGTAGTAATGAGGATAG Horse19_LINE >L1MA9_3END ---------------------------------------------------------------------------TTTTT CCAGC-------TTTATTGAGG-TATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATA TACGTATACAT--------------TGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTT AC---CATTTTTTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAAATTTCAAGTATACAATACAGTATTATT AACTATAGTCACCATGCTGTACATTAGATCTCCAGAACTTATTCATCC-------------------------------- ---------------------------------------------------------------- >Sus_scrofa GGCAAAATCTTTT-CCTCCACAAAAGTCCATAAATGTAATTAAAATAAATT---TCATACACTTTT--------TTCTTT TTATC----TTTTTTATTGAGATTATAATTGACATAT-AACATTATGTTGGTTTCATCTGTACAATATAATGTAT--ATA TTTGTATATGTACTTGTATATATACTGCCAAATGATAACCACAATAAGTCTAATTAAC--ATCAATCACCATACATGGTT GCAAACTTTTTTCTT----------GGGCTTTTAAGATTTACACTCTTAGCAACTTTCAAATATACAATACAGTGTAATT AACTCTAGTCACACTTCTCTACATCACATCACCAGAACTTACTTATCTTATAACTAGATGTTTATG-CATTTGA---CCA CATACTTTT---CAA-TGTCATAATTATAGTGGGTATTCTATGCTTGGCCATAGGTATGATCTA >Tursiops_truncatus GGCAAAGTCTTTT-CCTCCACAGAAGTCCACAAAGGGAA-TAAGATAAATT---CCACATACATTT---TTTTTTACTTT TTATCTTTTTTTTTTATTGAGG-GATAATTTACATAT-AACATTATGTTGGTTTCGGGTATACAACATAGTGATTCAATA TTTGTGTATAT--------------TGCCAAATGATCACCACAGTAAGTCTAGTTAAC--ATCTATCACCATACATCATT ACAAACTTTTTTTTCCATATGATGAGGGGTTTTAAGATT-----TCTTAGCAACTTTCCAATATACCATACAGTATTATT AGCTATAGTCACTATACTGTACATTACATCCCCAGGACTTATTTATCTTATAACTAGAAGTTTATGTC-TTTGA---CCA CATACTTTT---AAA-TGTAGTAATTATAGTGGCACTTCTGTGCTTGG-CATAGGTACGATCCA >Equus_caballus GGCAAAATCTATT-CCTCCACAAAAGTCCATAAAGGTAA-TAAAATAAATT---CCATATATTCTT---------TTTTT TCATC---TTTTTTTATTGAGA-GATAATTGACATAT-AACATTATATTAGTTTCAGGTGTACAATATAATGATTTGATA TTTGTATATGT--------------TGTGGAATGATCACCACAATAAG-----------------------TACGTGGTT ACAAACTTTTTCTTTCTTGTGATGAGGACTGCTAAGATTTACTCTCTTAGCAACTTTCAAATATGCAGTACTGTCTTATT AACTGTAGTCACCATGCTGTATATTACATCTCCATGACTTATTTATTTTATAACTGGAACTTCGTATCTTTTGA---CCA CATACTTTT---AAA-TGTAGTAATTCTAGCGTCTGTTCTGTGCTTAG-CATAGGTATGACCCA >Ceratotherium_simum GGCAAAATCTATT-TCTCTACCAAAGTCC------GTAA-TAAAATAAATT---TCACATACTTCT-----TTTTTCTTT TTATC----TTTTTTATTGAGA-TATAATTGACATAT-AACATTACATTAGTTTCAAGTGTACAATATAATGATTCAATA TTTGTATATGT--------------TGCGAAATGGTCACCATAATAAATCTAGTTAAC--ATCCATCA--ACATATAGTT GCAAACTTTTTTTCT--TGTGATGAGGACTTTTAAGATTTAATCTCTTAGCAACTTTCAAATATGCAATACAGTATTATG AACTATAGTCACCTTGTTGTGCATTACATCTCCATGACTTATTTATATTATAACTGAAAGTTTGTATCTTTTGA---CCA CATACTTTT---AAA-TGTAGTAATTATAGTGGCTATTCTCTGCTTGG-CATAGGTATGACCCC >Canis_familiaris GGCAGAATTAATT-CTTCCGCTAAAGTCAGTGAGGACAA-TAAAATAAATT----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------CCA CCTACTTTT---AAA-TGTAGTAATTATAGAGGCTATTATATACCTGG-CATAGGTATGATCCA >Felis_catus GGCAAAATGTATT-CCTCCACAAAAGTCAATACGGGTAA-TAAAATAAATT----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------CCA CATACTTTC---AAA-TGTAGTAATTATAGCGGTTATTATGTGCTTGG-CATAGGTATGATCCA >Manis_pentadactyla GGTAAAATCTATT-CTTCCACAAAAG---------GTGA-TAAAAT---------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------CCA TGTACTTTT---TAA-AGTAGTAATTATAGTGGCTATTCTGTGCTTGG-CATAGGTATGATCCG >Myotis_myotis GGCAAAATATATTCCCTCCACACAAGTCCA-AAGGGTCA-TAAAAGTAATT----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------CCA TATTTTTTA---AAA-TGTAGTAATTATAGTGG-----CTTTGCTCAG-CAAAGGCATGATCCA >Rousettus_aegyptiacus GGCAAAATCTATT-CCTCCACAAAAGTCCATTAAAGCAA-TAAAATAAATT----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------CTA CATTCTTTT---AAA-TATAGTAATAATAGTGGCTAGTCTATGCTCAG-CATAGATCTGACCCG >Condylura_cristata GGCACTATCTTTT-CT---ACAATAGTCAATCGAGATAA-TAAGATAAATT----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------CTA TATACTTTT---AAA-TGTGGTAA--ATAGTGCCTATTCTCTGCTTGG-CATATATATAATCCA >Sorex_araneus GACAAAATGTATT-TCTCCAAAAAATTCCATAGAAGTAA------TAAATC----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------CCA CATACTTTA---AAAATGTAGTAATTATAGTAGCTATTCTGAGCCTGG-CATGGGTAAGATCCA >Heterocephalus_glaber GGCAAAAT--ATT-TCCCCACAAAAATTCATAAAGATAA-TGGAATAAACT----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------CTC CATACTTTT---TGG-CATAGTAATTATTGTGACTATTCTTTGTATGG-CAGAAATTTGTTCCA Horse19_LTR >MER21C ---------------------------------------------------------------------TGTGTA---GG -AAAAAACAAA--------------CTGTTTTTCT------CTACTCTCACAA-------CACTTCTG-NCACCAAATGT GTGGG-GTTTTTCCCACACACCAAGCAATTCTCCAGCGGACACCAGCTGGGTGTCCTACAATTCAATTCAATTCTGACAC TATCTACCTGGAGNTAGCGTCAGATCCCACAGGTTAAGGGCTCAGTCCCACAAGACTGC-CCCCACTTCAGACGCCAATC GCAAGT--------CCCAGGTTGTGACCTGTACTTCTGACCGACC-GGCTATAAATCGGGGGTTCCCACGACCCCCTCCT C---GGGTTCGATAATTTGCTAGAGCGGCTCACAGAACTCAGGGAAACACTTTACTTACGTTTACCGGTTTAT------- ------------------------TATAAAGGATATTACAAAGGATACAGATGAACAGCCAGATGGAAGAGATGCATAGG GCAAGGTATGTGGGAAG-----GGGCGC-GGAGCTTCCATGCCCTC----TCCGGGCGCGCCACCCTCCCGGCACCTCCA CGTGTTCAGCAACCCGGAAGCTCTCCGAACCCCGTCCT-TTNGGGTTTTTATGGAGGCTTCATTACGTAGGCATGATTGA TTANATCATTGGCCATTGGTGATCAACTCAACCTTCAGCCCCTCTCCCCTCCCCGGAG-GTCG-GGGGTGGGGCTGAAAG TTCCAACCCTCTAATCACATGG-TTGGTTCCCCTGGCGACCAGCCCCCATCCTGAGGCTATCCAGGAGCCCCCAGCCAAG AGTCACCTCATTAGAACAAAAGACGCTCC---------TATCACCCAGGAAATTCCAAGGGTCTTAGGAGCTCTGTGTCA GGAACCGGGGTCAAAGACCAA-------ATATTAGAACAAAAGATTCTCCTAGCGCCCCTATCGCTCA------------ ---------------------------------------------------- >Equus_caballus ATATCCTCT-------T-GGGAGCATCTGCAGCATTTCCAAAAAGAAGTCTGGGTTTT---GGGAC---TATATT---GG AAAAAAACCCAG---TTTTGCCCTTCTGTGTTTTTCCTTTACTACTCACACAGAACACTTCACTTCTGGTCACCAAGTGT GTGGGTGTTTTTCCC-CACAC-CAATAATTGTC-TGCG-ACATCAGCTGGGCATCCTACAATTTAGCTCAATTCTGACAC TATCTACCTGGAGAGAGCATCAGATCCCAGAGGCT--GGGCTCAGTCCCACAAGACTGCTCCCCATGTCAGATGCCAATC GCAAGCAGTAGGTCCCCAGGTCA--CCCACAACTTCTGTCCAACGTGGCTACAAATCAGTGGTTCCCATGACCTCCTCCC CCTTGGATTCGATTATTTGCTAGAACAGCTCATAGAACTCAGGGAAACACT-GACTTATGTTTACCAGTTTAT------- -------------------------------TGTATGATAAAGGAAACAGATGAATAGCCAGATG-AAGAGATGCATAGG GTGAGGT--CTGGGAGGGTCCCGAGCGCAGGAGCTTCTGT--CCCTGGAGTTGGGGTGTGTCA-CCTCCCGGTATGTGCA CGTGTTCACCGACCTGGGAGCTCTCTGAATCCCATACTATTGGGCTTTTTGTGGAGGCTTCATCACGTAGACATGACCCA T------------CACT-------AATTCCATTTTCAGCCCCTCTCCCGTCTCAAGAGAACGGTGGGGCGGGGCTGAAAA TTCCAAGCTTCCAGTCA--TGGCTTGGTCTTTCTGGTGACCAGCCCCCGTCCACGAGC-----------CCAC---CCAG AGTCACCTCATTAGAACAAAAGATGCTCCCAGTGCTCTTATCACTTGGGAAATTACAAGGGTTTTAGGAGCTGTGCGCCA GGAACCAGGGGCAGAGGCCAG--CACAGATATT-----------TTCTATTATCTCACA------------GGGAC---A TACATCTA-TTGAAGCCATGTGTTGGTGTGGGTCCCTCAGATTTTCTGGAGC >Ceratotherium_simum TTATCCTCT-------T-AGGAGCATCTGCAACATTTCCAAAAAGAAGTCTGTGTTTT---GGGAC---TGTATT---GG AAAAAAAATCCAGTTTTTCTCCCTTCTGTGTTTTTCCTTTACTACTCACACAAAACACTTCAGTTCTGGTCACCAA--CT GTGGGTGTTTTTCCC-CACAC-CAATAATTCTC-TGTG-ACACCAGCTGGGTGTCCTATAATTTAGCTCAATT-TGACAC TATCTACCTGGAGATAGCATCAGATCTCACAGGTTAAGGGCTCAGTCCCACAAGACTGCTCCCCACTTCAGATGCCAATC ACAAGTATGAGGTCCCCAGGTTA--CCCACAACTTCTGTCCAACTTGGCTACAAATCAGAGGTTCCCATGACTTCCTCCC CATTGGATTCAATTATTTGCTAAAACAGCTCACAGAACTCAGGGAAACACT-TACTTACATTTACCAGTTTAT------- -------------------------------TGTATAATAAAGGATACAGACGAACAGCCAGATG-AAGAGGCTCATAGG GCAAGGT--CTGGGAGGGTCCTGAGCATAGGAGCTTCTGTCCCCCTGGAGTTGGGGTGCATCACCCTTCTGGTATGTGGA TGTGTTCACCAACCTGGGAGCTCTCTGAACCCCATACTACTGGGACTTTTGTGGAGGCTTCATCACGTGGGCATGATTGA T------------CATT-------AATTCAGTTTTCAGCCCCTCTCCTTTCTCAAGAGAATGG-GGGGCAGGGCTGAAAA GTCCAAGCTTCTAATCA--TGGCTTAGTCTTTCTGGTGACCAGCCCTCATCCAGGAGCCATCTAGGAGCTCAC---TCAG AGTCACCTCATTAGAACAAAAGATGCTCCCAGGGCTCTTGTAACCTAGGAAATTACAAGGGTTTTAGGAGCTCTGTGCCA GGAACCAGGGGCAGAGACCAG--TATATATATT-----------TTCTATTATCTCACG------------GGGAC---A TATGTCTACTTGAAGTCATGTGTCAATGTGGGTCCCTCAGATTCTCTGGAGC >Myotis_myotis CTATCCTCT-------TAAGGAGCATCTGCAGCATTTCCA------------GGTTTT---GGGAC---TGTATTGGGGG GAAAAAAGCTAG--CGTCTCCCCTTCTGTGTGTCTCTTTTACTGCTCACGCAAAACACATCACTTCTGGATAGCACATGT GTGGGTTTCTCCCCC-CACATTAAACAGTTCTC-TGTG-ACACTAGGCTGGTGTCCTATAATTTAACTCAATTCTGAGAC TATCTACCTGGAGATGGTGTCAGATCCCACAGGTTAAGGGCTCAGTCCCACAAAACTGTCTCCCACGTCAGGTGCTAGTT GCAAGTAGTAGGTCCTGAGGTTA--CCCATAACTTCTGTCCATCTTGGCTACAAATCAGAGATTCTCATGACCTCCTCCC CCAAGGATTAGATTATTTGCTAGAACAGCTCACAGGACTCAGGGAAACACT-TACTTACATTGATCAATTTAT------- --------------------------TAAAGGGTATGCTAAAGGATACAGATGAACAGCCAGATG-GAGAGATACAT-GG GCCCAGT--CTGGGAGGGTCCCAAGTGCAGGAACTTCTGT-CCCGTAGAGTTGGGGTTCGACACCCGCCTGGTACATGAA TATGCGCACCAACCTGGCAGCTCCCTGAACAGCATGCCGCTGGGACTTTTATGAAGGCTTCATC-TGTAGGTATGGTCGA T------------TATT-------AACTCCATTTAAAGCCCTTCT-CTTTCTCAAGAGAATG--GGGGTGGGGCTGAACA TTCCAAGCTTCCATTCA--CAGCTTCATCTTTCTGGTGACTAGCCCTCATTT-GGAACATTCCAGGAACCCAC---CAAG AGTCACTGCATCAGAGCAAAAGACACTTC---------TATCACCAAGGAAATTACAAGGATTTCAGGGCCTCTGTGCCA GGAACTGGGGGCAGAGGCCAA----TATATATT-----------TTCTATGATCTCGCCA-----------GGGAC---A TATATTTCCTTGTAGTCATGTGTTGATGTGGGTCTCTCGGATTCTCTGGGGC >Rousettus_aegyptiacus TTATCCTTT-------T-AGGAGCATCTGCAACATTTCCAAAAAGAAGTCCAGGTTTT----GGAC---TGTATT---GG AAAGAAACCTAC--CTCTTCCCCTTCTGCGCGTCTCCTTTACTACTCACAC-AAACTCTTCACTTCTGGTCAT-----GT GTGTGGATTTTTCCC-ACACT-AAACAATTCTC-TGCA-ATGCCATCTGGGTGTCCTGCAATTTAACTCACTTCTGACAC TATCTACCTGGAGATGGTATCTGATCCCACAGGTTAAGGGCTCAGTCTCACAAGTTTGCCCCCCACTTCAGATGCCAATG GCAAGTAGTAGGTACTCAGGTTA--CCCACAACTTCTGTTTGGCCTGGCTACAAATCAGAGGTTCCCATGACCACCTCCC TGCTGGATTTGATGATTTGCTAGAATAGCTCATGGAACTCAGGGAAATACT-AGTGTGTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGTGTGTGTGTGTTTGTTTTAAGGCTATAATAAAGGATACAGATGAACAGCCAGACA-AAGAGATACACAGG ATGAGGT--CTGGGAGGGTCCTGAGTGTAAGAGCTTCTGTCCCAATGGAGTTAGAGTGCCTCACCCTCCTGGTACGAGGA TGTGTTCACCAACCTGGGAGCTTCCTGAGCACCGTATTATTGGGCTTTTTATGGAGGCTTTATC-TGTAAGCATGACTGA T------------CATT-------AACTCCATTTAAAATCCTTTTCCTTTCTCAAGAGAATGT-GGGGTGGAGCTGAAAA TTCAAAGCTTCTAATCA--TGGCTTCATCTTTCTGGTGAATAGTTTTCATCCAGGAACCATGGAAGAACCCGC---CCAG AGTCATCTAATCGGAACAAAAGACATTCC---------TATCACCCAGGAAATAACAAGGGTTTCAAGAGCTCTGTGCCA GGAACCAGTAGCAGAGACTAGTATATATATATT-----------TTCTGTTATCTTACA------------GGGAC---A TACATCTCCTTGTAGTCATGTGCAGACGCGGGTTCCTTTGATTTTCTGGAGC >Canis_familiaris TGATCCTCT-------T-GGGAGCATCTGTAACATTTCCAAAGAGAAGTCCAGGTTTT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------GGGAG---A TACAGCTTCTTGTAGTCATGTGTTGACAGGG--CCCTCAGATTCTCTAGAAC >Ailuropoda_melanoleuca GGGCCCTCTGTAGCACT-GGGAGCCTCGGTAACATTTCCAAAGGGAAGTCTAGATTGG---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------GG-AG---A TAGAGCGCCCTGCAGTCATGCATTGACGTGG--CCCTCAGATTCTCTAGAGC >Manis_pentadactyla TTATCCTTT-------T-AGGAGCATCTGCAACACTTCCAGAAAGAAGTCCAGGTTTT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------GGGAC---A TACATCTCCATGTAGTCATGTGTTGATGTGG--TCCTCAGATTCTCTGGAGC >Sus_scrofa TTATCCTCT-------T-GGGAGCATCTGTAACATTTCCAAAAAGAAGTCCAGGCTTT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------GGGAC---A CACATCTCCTTGGAGTCATGGGT--------GTCCCTTGGGTTCCTTGCAGC >Bos_taurus TTAGTCTCC-------T-AGGATCACCTGCAACATTTCCAAAAAGAATCCCAGGTTTT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------GGGGC---A TATCTGTCCTTGGAGTCATAC------------------------CTGGAGC >Condylura_cristata TTATCCTCT-------T-AGTGACCTCTGTGATATTTCCATGAAGAACTCTGGGC-TT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------AGGTT---G TATATCTCCCTGTGGCTGTGTGTTGATGTGGCTTCTTCAGATTTGATGGAGC >Sorex_araneus TTATCTTCT-------T-AGTATAATTTTCAATATTTATATAAAGAAGTCTAGTTTTG---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------GGGAT---A CACAACTCCCCATTGGTGTGCATTAATATGGGTCCCCCAGATTCTCAGGAGC >Homo_sapiens TTGTCCTCT-------T-AGGAACGTCAGCAACATCTTCAAAAAGAAGGCCCGGCTTT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------GGGAC---A CACATCTCCTTCTAGTTCTGTGTCAGCGCGGGTTCTTCAGATTCTCTGGGGC Horse20_LINE >L1MAB_EC --------------------------------------------------------------------------TTTTTT TTTTTCAGTTTTATTGAGATATAATTGACATATAACATTGTATTATGTTTAAGGTGTACAACATAATGATTTGATATATG TATATATTGTGAAATGATTACCACAAT----------------------------------------------------- -------------------- >Sus_scrofa CATTCAGAG-----------TGAGGACCCCCTGAACATGTGGCTGGCATCTGCAG---CAGGGGCAGGTTT------TCT CTCCCCAGGTTTATTGAGATATAACTGACATATATCTCTGTATAA-GTTTAAGGTACAGAGCATAATAGTTTGATATA-- CATACATTGTAAAATGATA-----------GGGGGG--TAGTCTT---GCAGAGGATCCAGCACCT-AATTCACAGGGTC TATACTCACTTTGGGTGGTT >Vicugna_pacos CAGTCAGAGTGCAGGTGGCCTGGGGACACCCTGAACTTGTGGCTGACATCTGCAG---TGGGAGCAATTTT------TTT TGGCCTAATTTTAGTGAGATATAATTGACATACATCACTGTGTAA-GTTTAAGGTGCAGAGCATAATAGTTTGACTTA-- TATATATTGTGAAATGATG-----------TGGGGAGGGAGTCCT---GTAAAGAATGGAGCCCCT-AACTCATGGGGTC TGCACTCACTCTGGGTGATT >Equus_caballus CAGTCAGAGCACAGGTGGCCTGGGGATCCCCTGGACCTGTGGCTGGCATCTGTAG---TGGGG-CAGGTTT--------- TTTTCCAGTTATATTGAGATATAACTGACATGTATCACAGTGTAA-GTTTAAGGTGTACAGCATGA---TTTGACTTA-- CACATACTGTGAAATGATA-----------TGGGGG--CGGTCTT---GTGGGGGATTAAGCCTTT-AACTCATAGGGTT TGCACTAACTCTGGGTGGTT >Ceratotherium_simum CAGTCAGAGTATAGGTGGCCTGGGGATCCCCTGGACTTGTGGCTGGCATCTGTGA---TGGGGGCAGTTTT------TTT TTTTTCAGTTTTATTGAGATATAATTGACATACATCACTGTATGA-GTTTAAGGTGTACAGCATGATGGTTTGACTTA-- CATATACTGTGAAACGACA-----------TGGGGG--CAGTCTT---GTGGAGGATCAAGCCCTT-AACTCACAGGGTT TGCGCTAACTCGGGGTGGTT >Canis_familiaris TAGTCGGAGTGCGAGTGGCCTGGGGATGCCCTGAACTTGTGGCGGGGATCTGTAG------------------------- -------------------------------------------------------------------------------- ------------------------------TTGGAG--CAGTCCT---GTGAAGGATCAAGTCCTT-AATTCGGGGGGTT TGTGTTAACTGTGGGTAGTT >Felis_catus CAGTGAGAGTGTAGGTGGCCTGGGGACACCCTGAGTTCATGGCTGGCATCTGAGC------------------------- -------------------------------------------------------------------------------- ------------------------------TGCAG---CAGTCTT---GTGAAGGATCAAGCCCTT-AACTCATGGGGTT TGTGCCAACCGTAGGCAGTC >Manis_pentadactyla TAGACAGATGGCAGGTGGACTGAGGACCTCCTAAACTTGTGGCTGGCATCTGCAG------------------------- -------------------------------------------------------------------------------- ------------------------------TGGTG---CAGTCCT---ATAGAGGATCAAGTTTT--AACTCATGGGACC TGTGCGATCTGTGGGTAATT >Pteropus_vampyrus TAGCCAGAGTACAGGTGGCCTGGGGATCCCTGGAACTTGTAGCTGGCATCTGCAG------------------------- -------------------------------------------------------------------------------- ------------------------------TGGAGGG-CAGTCTT---GTGGAGGATCAAGCCCTT-AACACATAGGGTT TGCACTAACTGTGGGTAGTT >Rhinolophus_ferrumequinum CAGTCAGAGTGCGGGTGGCCTGGGGACCCCTGGAACTTGTGGCTGACAACTGCAG------------------------- -------------------------------------------------------------------------------- ------------------------------TTGGGG--AAGTCTC---GTGGAGGATCAGGCTCTT-------------- TGTGCTAACTGTGGGTAGTT >Condylura_cristata CAGTCAGTG-----------TGGACACGCCCTGAACTTGTGGCTGGTGACTGCAA------------------------- -------------------------------------------------------------------------------- ------------------------------TGGGG---CAACCTT---GTGGAGGATGGAGCCCTTAAAATCATAGG--- -----------TGGATAGCT >Erinaceus_europaeus TAGTCAAGATGTGAGTAACCTGGGAACCCTGTGAATCTGTAACTAGTATCTGGAG------------------------- -------------------------------------------------------------------------------- ------------------------------TGGGGG--GAGA--T---GTGTTATACTAAGCCCTC-AACTTATGGGGTT AGC----ACAGTGGA-GGTT >Homo_sapiens CAGTCACTGTGCAGGTGGCCTGGGAACCCCCTGAACTTGCA-CTGGCATCTGAAG------------------------- -------------------------------------------------------------------------------- ------------------------------TGGGAG--CAGTCTT---GTAGAGGGCTGAGCCTTT-AATTTGTGAGGTC TGTGCTAATTCCGGGTGGTC Horse20_LTR >ERV54-EC_LTR ---------------------------------------------------------------TGTTAAAAAACAAA--- ATTCAACTGAGTAAATTTTAAAGATCTTATTGGCTTTATTCAATGATTCATGAATTGGGCAGCATCCAATCTAGCAGATA GAAAGGAGCTCCGAGGAGCTGTACAAAATGAAAGACTTTTATAGGCAGAAGGGAGCAGGAACAAGGAAGTTATACTAGGC AAAAAAGTGGATTGGTTATTGCAAGGTTACTTTCCTTTAGGGGATGGCAGGGGTCTATCAGGCAGATTACCTAACTAGTG CTGATCAGGTGATTCCTGATTGACTGGTTTAAGATTCCATTTCTGGGAGAGCCGAAACTGTAATTAAGTTAAGTCTCGGT TTGGTGACGTGGGGCT-TAGCATAAGTGACTCCATTTTGGGCCTGTTGTCTTG---TTTTTAACA--------------- ----------------------------------------------- >Equus_caballus ACGGAACACCCCCATTGAC-ATAAGCTCATCAGTTAGTAAGATGGCCTCCTAG---GTGG---TGTTGAAAGATAAACTG AGGCATTCTAT-ACATTTTA-AGAGTTTATTTGAGTAA--AAATCAATG-CAAATCATGCAGCACTCAATCTAGC----A GAAAGGAGCTCCAAAGAGCTGTACAAAATG----GCTTTTATAGGCGGAAAGGAGCAGG-ACAAGGAAGTGATGCTAGAC AAAAAAGTGAGTTGGTTATCGCAAGGTTACCTTTGTTTAGGGGACGGCAGGGATCTATCAGGTAGATTACCTAACTAGTG GTGATTAGGCAATTCTTGACTG----GTTTAAGATTCCGTTTCT-CAAGAGCTGAAACTATAA-----TTAAGTCTTGGT TTGGTGACATGGGGCTTTAGCATAAGTGACTCCATTTTGGGCCTGTTGTCTTGCTTTTTTTAACA---GTGG---GCAGT TTTCTTACCTAAAGTTGAAATTTGCGTATTTGTAAAATTCATTTATA >Tapirus_indicus AGGGAACGCCCCCATCGAC-AACAGCTCACCAGTTAGTAAGATGACCTCCTAG---GTGG---TGGTAGAAGATAAACTG AGGCATTTTAG-AAATTTTA-AAAGTT----TGAGTAA--AAATCGGTT-TGAATCAGGCAGCATTCAATCTAGCAGATA GAAAGGAGCTCTGAAGAGCTGTACGAAATGAAAGAATTTTATAGG-GACAGAGAGCAGG-ACAAGGAAGTTATGCTAGAC AAAAAAGTGGGTTGGTTATCACAAGGTTACATCCCCTTAGGGGATGGCAGGGATCAAACAGGCAGATTACCTAACTGGTG CTG-----------------------GTTTAAGATTCCATTTCTGGGAGAGCCAAAACTGTAA-----ATAAGTCTTGGT TTGGTGACATGGGGCTTTAGCATAAGTGACTCCATTTTGGGCTTGTTGTCTTGTTTTTTTTAACA---ATGG---GTAGT TTTCCTACCTAAAGTTGAAATTTGTCCGTTTGTAAAGTTCATTTATA >Myotis_myotis ACAGAACATCTGCATTGAC-ATAAGCTCACTAATTAGTAAAATTGCCTCCTAG---GCAG---TGTTAAAAGATAAACTG AAGCATATTAA-AATTTATA-AGAGCTTATTTGAATAA--AAATGAATT-CAAATTGGGCAGCATCCAATCTAGCAGATA GAAAGAAGTTCCAAGGAGCTGTACAAAATG--AGACTTTTATAGGCAGAAGGGAGTAGGAACACGAAAGTTATACTAGAC AAAAGAT--GATTGGTTATTGCTAAGTTATTCTCCATTAGGGGAAGGCAGGGGTCTACAAAGCAGATTCCCTAA-TAGTT CTGATCAGGCGATTCCTGACTGACTAGTTTAAGATTCCATTTCTGAGGGAGCTGAAACTGTAA-----TTAAGTCTTGGT TTGTTGACTTGGGGCTTTGGCGTAAGTGACT-------------------ATTTTCTTTTTATCA---GGGG---GTAGT T---------------GAAATTT--------GTAAAGTTCATTTATG >Rousettus_aegyptiacus AAGCAACACCTGCACTGAC-ATAAGCTCACTCATCAGTAA-ATGGTCTCCTAG---GTTG---TGTTAAAAGGTAAACTA AGACATATTAA-AATTTTTA-AGAGTTTATTTGAATAA--AAATGGATA-TGAATTGGATAGCATCCAATCTA----CTA GAAAGGAGCTCTGAGGAGCTGTATAAAATGAAAGACTTTCATTGGCAGAAGGGAGCAGGAACAAGGAAGTTATACTAGGT AAAACATCAGGTTCGTTATTGCAAGGTTACTTTCCTTTAGGGGATGACAGGGGTCTACTACGCGGGTTCCCTAACTAGTG CCAATCAGGTGATTCTTTTTTATTT--TTTAAATTTCTTTATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------------NNNNNNNNNNNNNNN---NNNN---NNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Canis_familiaris ATGGAATACCCACATTGAC-AT-AGCTCACCAATTAGTAAGATGGCCTCTTAG---GTGG-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------------TAGT CTTCTTACCTAAAGATAGAATTTGCCTATTTATAAAGGTCATTTATA >Felis_catus ATGGGACACTCACATTAAT-GT-AGCTCACCAATTAGTAAGATGGCCTCTTAG---ATGT-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------------CAGT CTTCTTCCCTAAAGATAAAATTTTCCTAATTCTAAAGTTCATTTATA >Manis_pentadactyla GTCA---ATCCACATTGAC-ATAAACTCACCAATTAGTAAAATGGCCTCTTAG---GTAG-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------ACAGT TTTCTTATATACAGATTAAATTTGCCTACTTGTAAAGTACATGTATA >Sus_scrofa ATGGAACATCGACATTGAC-ATACATTCACCAA-TAGTAAGATGGCCTCTTTG---GCAG-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------GTAGT CTTCCTACCTAAAAACGAAATGTGACTATTTGGGAAGTTCACTTGTA >Tursiops_truncatus ATGGGACACCCACATTGAC-AGAAGCTCATTAA-TAGGAAGATGGCCTCTTTG---GTGG-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------GTAGT TTTCTTACCTAAAGATAAAATGTGACTATTTGTAAAGTTCATTTATG >Condylura_cristata CTGGAACACCCACAATGAC-----------CAATTAGTAAGAGAAATTTGTAG---TGGG-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------GGTTGT TTTCTTA-------AAGAAATTTTCCTATTTGCAAAG----TCTTTG >Scalopus_aquaticus CTGGAACACCCACACTGAT-----------CAATTAGTAAGAGAACCTTGTAG---GCAG-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------ATTGT TTTCTTACTTAAAACAGAAATTTTCCTATTTGGAAAGC---TTTCCA >Homo_sapiens CTAGAACATCTCCATTGACAATAAGCTCATTGATTAGTAAGATGGCTTCCTAT---GTAG-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------GTATT TTTCTTACCTAACAATGAAATCT--------GTAAAGTTCATTTATA Horse21_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACA ACGTGATGTTTTGATATA---CGTATA-CATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCT--- -------CACATAGT---TACCATTTTTTTG----TGTGTGGTGAGAACA------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------????? >Sus_scrofa TTTTTCAGTTCTAAT-----------------------GCAGAGTTATTACATTCAACTCATAGGACAGTGTCTCAGTTT CAGACAATCTC---ATTAACCATCTCAT---AAGAAGGA----AAATGTCTTTATTCCTGATGGATGATCAGAGGGATG- -ATATCAGCCCATATCCTGCATATTTCACCCATGGGACTTTTATAATTCATCTCTCTAAGGAAAAATCTTACAGTTACTC ---TTAT-------TT---------CATCTAAATTGATGTATAATTGACATAT----ATGGTATTAGTTTCAGGTATACA ACAGA--GATTCAATATATTGTGTATA-TATTATGAAATGATCACAATA------CTGGTTA--CTCTAAGTTACTG--- -------TACATAGT---TACAATTTTGTTGT---TGTGT-------------TATTGAATCTA---AA-TCTGTTCC-- --CACTC-AGCTACTGACTGACCTGAACGATGAAGAGGATCATGGACTTTTAGATCAGAGGGA-CCCTTAGAGATGAC-- --CTAAAATTTTAATCCTCTCC-CTGTACAGATGAAGAACATGAAGCTGAATTGCCCAAGGTCACTGAGTCAGAGGCATA TCAGGAACTTGTAGCAATTCTCAGCC-AGAAACATTCTCACCTTGCTACACTGACCTG---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------GGATTATCCTTTCCTAAACATCAAAGAGAGCACAGCCAGACTC TGACCTAAGTTGACTAGAACCACTTTATTATTAAACGTTTCATGCTGTAAGGTTAAGTAGGAGTTCACATAAATAATGTG ATTAATACTTTTTTTGTGGCTGTGTGCTTTGTCTCTTCATAA-TTGTGATGTGA-ACATCGTTCACAGAAACGAAGGAGA TCCTATTCTTTATAAATGCTGTGGAACAGCTGCACATTATCATCCTGGCTCTTGAAAGTTTATGAAGT-AAAGCAAACTG CCGAAATAGCATTAAC >Bos_taurus CCTTTCAATTTTGATAAAAAACTAGAGCT-------ATGCAGAATTATGATATTCAACTCACAGGTCAGACTCTCAACTT CAGAGTATCTT---ATTAACCATCTTTGGTAATGAAAGG----AAATGTCTTTACTCCTGATGAATGATCAGAGGGTAG- -ATATC-----CTATCCTGAATGTTTCACATATGAAACTTTTATAATTCACCTCTCTAAAGGGAAATCTTGCAGTTACTC ---TTATTG---TATC---------TTTTAAAATTGAGGTATAGTTGACATAT-AACATTGTATTAGCTTCAGGTGTACA GCATAATGATTTGATACATTGTGTGTG-TATCATGAAATGATTATCAGAGTAA---TGGTTA--CTATCAGTCAATGACA TAATAATTACATAATAATTACAGTTATTTTCT---TGTGT-------------TACTGAATCTA---AA-TCTGCTTCTG AGCACTC-AACTACTAGCTAATCTAAAAGATGAAGAGAATCATAGACTTTTAGATCAGAAAGA-CACTTAGAGACTAC-- --TTAAAATTTTAATCCTCTCC-CTTTACAGATGAAGGAAATAAAGCTGAATTGCCCAAGGTCCCTCAGTTGGAAGTATA TTAGGAACTTGTACCAATTCTCACCCCAGAAACATTCTCACCTTGCTACACTGGTCTT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------GGATTATTCCTTCTTAAACATCAAAAGGAGCAGAACCAGACTC TGACTTCAGATGACTAGAATGGCTTTACTATTAAATGTCTCAAGTTATAAGGTTAAGTAGGAGTTCCCATAAATAATGTG ATTAATAC--TTTTTGTGACCATGTGCTTTGTCTCTTCATAA-TTGGGATGTGA-ACAT----------AGCTAAGGAGA CCTTGTTC-TTATAAATGCTATGGAACAGCTGCACAGTATCATCCTGACTCTTGAAAGTTTACGAAGT-AAAGCAAACTG CCGAAATAGCCTTAAC >Equus_caballus TTTTGCAGATCTAATGAAAACCTAGGGTTGGTCATCATGCAAAATTATGATATTCAA-TCACAGGACTGTCTCTCAGTTT CAGAC--TCTC---ATTAGCCATCTTCTGTAATGAAAGA----AAATGTCTTTAATCTTGATGGATGATCAGAAGGATG- -ATGTCAGCTCATATCCTGACTATTTCACACATGGGACTTTCATAATTCGTCTCTCAAAGAGGAAATCTTGCAGTCACTC ---TTAATG-AATCTT---------TTTTTTAATTGAAGTATAATTGACATAT-AGCATTATATTAGTTTCAAGTGTACA ACGTGAAGATTTGATATT---TGTATA-TATTGTGAAATGATCACCACAATAAGTGTAGTTA--ACATCAGTCACCA--- -------CACGTATTTA-CAGAAGTTTGTTGTGTATGTGT-------------TATTGAATCTT---AA-TCTGCTTC-- --CTCTC-AACTACTTACTAATCAGAAATGTGAAGAGGATCATAAAGTTTTAGATTAGAAGGA-CTGTTCAAGATTAT-- --ATAATATTCTAATCCTCTCC-TTATACAGATGAAGAAAATGAGGCTGAATTGTCCAAGGTCACTGGGTTGGAGGCATA TCAGGAACTTTT-CCAATTCTTAGCCCAGAAACACTGTCACCTTCACATGCTGGTCTA---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------GAATTATCCCTTCTTAAACATTAAAGGGAGCAAAACCAGCCCC TGACTTAAAATGGCTAGAATGGCTTTATTATTAAATGTGCCAAGCTATAAGGTTAAGTGGGGGATCATATAAATAATATG ATTAATAC----TTCGTGACCATGTGCTTTGTCTCTTCATAG-TTGGGATGTGA-ATATAGTTCACAGCAGCTAAGGAGA CCCTGTTCATTATAAATGCTATGTAACAGCTGCACAGTATCACTCTGGCTTTTGAAAGTTTGTGAAGT-AAA-------- ---------------- >Ceratotherium_simum CTTTTCAGATCTGATGAAAATCTAGGGTTGGTCATCACGTAAAATTATGGTATTCAATTCACAGGACTGCTTCTCAGTTT CAGACTATCTC---ATTAGCCATCTTCTGTAATGAAAGT----AAATGTCTTTATTCTTGATGGATGATCAGAGGGATG- -ATATCATCTCATCCCCTGAATATCTCACATACGGGAATTTTATAATTCATCT----AAGAGAATATCTTGCAGTCACTC ---TTATAG-AATATT---------TTTTTTAATTGAGGTATAATTGACATAT-GACATTAAATTAGTTTCAAATGTACA ACATAATGTTTCAATATT---TGTATA-TATTACGAAATGATCACCACAGTAAGTCTAGTTA--ATATCAATCACCA--- -------TACATAT----AAGATTTTTTGTTTGTGTGTGT-------------TATTGAATCTT---AA-TCTGCTTC-- --CTCTC-AACTATTAACTAATCTGAAATGTGAAGAGGATCATTGATATTTAGATTAGAAGGA-CATTTAGACACTAT-- --ATAATATTCTAATCCTCTCC-TTTTATAGACGAAGAAAATGAGGCTGAATTGCCCAGGGTCACTTGGTTGGAGGCATA TGAAGAACTTTT-CCAGTTCTCAGCCCAGAAACATTCTCACTTTGACATGCTGGTCTA---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------GAATTATCACTTCTTAAACATCAAAGGTAGCACAACCAGCCTC TGACTTAAAATGACTAGAATGGCTTTATTATTAAATGTCTCAAGCTATAAGGTTAAGTAGGGGTTCACATAAATAATGTG ATTAATAC----TTTGTGACCATGTGCTTAGTCTCTTCATAG-CTGGGATGTGACACATAGTTCACAGAAGCTAGGGAGA CCCTGTTCTTTATAAATGCTATGTTACAGCTGCACAGTATCACCCTGGCTTTTGAAAGTTTATGAAGT-AAAGGAAACTA CCAAAATAGCATTAAC >Desmodus_rotundus TTTTTCAGATCTAATGAAAATCTAGGGTTCT---CCATACAAAATTAGGGTACTCAATTCATAAGATTGTCTCTCAGTTT CAGACTGTTTC---ATTAAATATCGTCAGTAATGAAAGA----ACTTGTCTGTTC--TTGATACATGGTCAGTGGGATG- -AT---AATCCATATCCTAAATATTTCATAAATGGGACTTTTATAATTCTTTTCTCTAAGGCTAAATCTCGCAGTCATTA ---TTATTG-AATCTT---------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------CTTTTTGTTCT---TGTGT-------------TATTGAATCTT---AT-TCTGCTTC-- --CTTTT-ATCTA----CTAACCTGAAATGTGAAGAGGATCATAAAC-TTTAGATTAGAAGGG-CTATTAGAGATTCCTA TATTAATATTTGAATCATATTC-TTTTACAAATGAAGAAAATGAGGCTGAATTGTCCAAGGCCATTTGGTTGGAGGCATC TCAGGACTTTTT-CTAGTTTTCAGCTTAGAAACATGTTCATCTTGCTGTGCTGGTCTGGGATTATCCCCTCTTCTTCTTC TTTTTAAAATTTTTATTGTTATTCAATTACAGTTGTCTGCATTTTCTCCCCATCCCTCCACCCCACCCCATACGAACCCA CCTCCCATCCCCGCCTCCACCCTCCCCCTTGATTTTGTCCATGTGTCCTTTATAATAGTTCCTGTAATCCCCTCTTCCCA CTATTCCCTCCCTACTCCCCTCTGGCTATTCTTACATTGTTCTTAACTTCAATGTCTCTGGTTATATTTTGTTTGCTTTT TTCTTTTGTTGATTATGTTCCAGCTAAAGGTGAGATCATATGGTATTTATCCCTCACCACCTGGCTTATTTCACTTAGCA TAATGCTCTCCAGTTCCATCCATGCTGTTGCAAAGGGTATAAGCTCCTTCTTTCTCTCTGCAGTGTAGAATTCCATTGTG TAAATGTACCATAGTTTTTTGATCCACGCAAATGAATGGATTATCCCTTCTTAAACATCAAAGGAAGCACAACCAGCCTT TGACATAAAATGACCAGAATGGCTTTATTATTAAATGTTTCAAACTATAAGGTTAAGTAGGGATTCACATCAATAATGAG ATTAATAC--TTTCTGTGACCATGTGCTTTGTATCTTCACAGTTTTTAATGTGA-ACACAGTCCCTGACAGCTAGGGAGA CCCTGCTCTTTGTAACTGCTGAGTGACAGCTGTTCAGCATCATCCTGCCTCTTGAAAGTTCATGCAGT-GGAGCAAACTG CCGAAATAGCATTAAC >Rousettus_aegyptiacus TTTTTCATGTCTAATGAAAATCCTGTGTTCTTTATCATGCAAAATTATGATATTTAATTCACAGGATTGTCTCTCAGTTT CAGACT-TCTC---ATTAACCATCATCGGTAATAAAAGA----AAATGTCTATTC--TTGATGGATGATTAGAGGGATG- -ATATCAGTCCATATCCTGAATATTTTATACATGCAACTTGTATAATTCATCTTTCTAAGTGAAAACCTTGCA----TTC ---TTACTG-AATTTT-------TTTTTTTAAATCGAGGTATAATTGACATCG-AACAT---ATTAGTTTCAGATGTACA ACGTAATGGTTCGATATT---TGCATATTATCATGGAATGATCGCTACAATAAGTCTATTTA--ACACCAGCCACCA--- -------TATATA-----GACATTTTTATTCT---TGCGT-------------TGTTGAATCTT---AA-TTGGCTTC-- --CTCTT-ACCTACTTATTTA-----AATGTGAAGAGGATCATAGACTTTGAGATCAGAAGAA-CCCTTAGAGGCTGT-- --ATACTGTTTGAATTGCATCC-TTTTATAGAAGAAGCAAATGAGGCTGAATTGCCCAAGGTCACTTGGTTGGAGGCACA TCAGGAACTTTT-CCAGTT-TCAGCCTAGAAACATTTTCACCTTGCCATGCTGGGCTG---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------GAATTGTTCTTTCTTAAACATCAAAGGGAGCACAAACCACCTC TGACTTGAAATGACTAGAATGGCTTTATTATTAAATGTTTCAAGCTGTAAGGTTAAGTAGGGGTTCACATAAATAATGTG ATTAATAC--TTGTTGTGACCACGTGCTTTGTATCTTCATAA-TTGGAATGTGA-ACACAGTTCATAATGGCCTAGCAGA CCCTGCTCTTTATAAACGCTATGCAACAGCTGCACAGTATCACCCTGGCTCTTGAAAGTTTATGAAATAAAAGCAAACTA CCGAAATAGCATTCAC >Canis_familiaris TTTTTCAGATCTAATGAAAATCCAGGGTTGGTCATCATGCCAAATTATGATATTCAATTCACAGGACTGTCTCTCAACCT CAGGCTATCTC---ATTAACCAGCTTCAGTCATGAAAGA----AAATGTCTTTATTCTTGATGGATGATCAGAGGCATA- -ATACCAGCCTACATCCTGAATATTTCACACATGGGACTTTTATCATTTGTCTCTCTAAGGGAAAATATTATAATCATTC ---TTAT-GAAATCCT---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------AACTATACTTC-- --CTCTCTACCTACTCACTAATCTGAAAGGTGAAGAGTATCATAGAATTTTGCTTTGGAAGGATTCTTTAGAGATCAT-- --CTAAAATTTGAATCCCTTTCTTTTTATAGATGAAGAAAATGAGGCTGAATTGTCCAAATTCACTCACTGGGAGGCATA TCAAGAACTCGTACCAAGTC-----------------TCACCTTGCCATGCTGGTCTA---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------GGATTATCCCTTCTGAAACATCAAAGGGGGCACAACCACCCTC TGACTTAAAATAACTAGAATGGCT---TTATTAAATGTTTCAAGCTGTAAGGTTAAGTAGGGGTTCGTATAAATAATGTG GTTAGTAC-TCTTTTGTGACCATGTTCTTTGTCTCTTGGTAC-TTGGGGTGTGA-ACATTGTTCACAGCAACGAGGGAGA CCCTGTTCTTTATAAACGCTATGCAACAGCTGCACAGTATCAGTCTGGCTCTTGAAAGTTTATGAAGT-AAAGCAAACTA CTGAAATAGCATTAGC >Felis_catus TTCTTTAGATCTAATGAAAATCCAGGGTTGGTCATCATGTCAAATTATAATATTCAATTCACAGGACTGTCTCTCAACCT CAGACTATCTC---ATTAATCATCTTCAGTCATGAAAGA----AAATGTTTTCATTCTTGATGGATGATCATAAGGATA- -ATACCAGGCCACATCCTGAATATTTCACGCATGGGACTTCTACAATTTGTTTCCCTAAGG-------------TCATTC ---TTAT-GAAGTCTT---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------AACTATACTTT-- --CTCTCTACCTACTAACTAATCTGAAAGGTGAAGAGAATCATAGATTTTTAGATTAGGAT---TCTTTAGAGATTAT-- --CTAAAATCTGAATCCTCTTC-TGTTACAGATGAAGAAAATGAGGCTGAATTGCCCAAGTTCACTCACTGGGAGGCA-- ----GGAATTGTACTAATTCTCAGTCCAG------TGTCACCTTGCCATGCTGGTG------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------ACATGCATGTCCCTTAATTATCGAAG-------------CCTC TGACTTAAAATGACTAGGATGGCTTCATTATTAAATGTTTTGAGCTGTAAGGTTAAGTAGGGGTTCACATAAATAATATG GTTAATAC-TTTTTTGTGACCATGTGCTTTCTCTCTTCAGAA-TTGGGATATGC-ACGTTATTCACAGCAGCTAAGGAGA CCCTGTTCTTTATAAAGGCTATGCAGCAGCTGCATGGTATCACTCTGGCTCTTAAAAGTTTATGAAGT-AAAGCAAACTA CTGAAATAGCATTAAC >Manis_pentadactyla TTTTTCATATCTAATAAAAATCTAGGGTTGGTTAGCACACAAAATTATGATATTCAATTCACAGGAC----TCTCGAT-- -GAACTGTCTCTAAATTAACCAGTTTCAGTAATGAAAGAAAATAAATGTCTTTATTCTTGATGGATGATTAGAGGGATG- -ACATCAGCCCATGTCCTGAATATTTCAGACATGGGGCTTTCATAGTTTGTCTCTTTCAGGGAAAATCTTGCAATTACTC ---CCAA-GGAACCTT---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------AA-TCTGCTTC-- --TTCTC-ACCTACTAACTAATCTG-----TAAAGAGGATTAGAGACTTTAGGATTGCAAGGA-CTCTTGGAGACAAT-- --CTAAAATAGAAATCCTCTGCCTTCTATAGATGAAGAAAATGAGACTGAATTGCTCAAGTTCACTTGGTGGGGGGCATA TCAGGAACTTCTACAAATTCTCAGCCCAGAAATATTCTCACCTTACCATGCTGGCCTG---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------AGATTACCCCTTCTTAAACATCAAAGGGAACATAACCCGCCTC TGACTTAAAATGGCTAGAATGGTT---TTATTAAATGTTTCAAGCTATAAGGTTAAGTAGGAGTTCACATAAATAATGTG ATTAATAA--TTTTTGTGACCGTGTGCTTTGTCTGTTTGTAA-TTGGGATGCAA-ACATAGTTCATAGCAGT---GGAGA TCCTGTTCTTTATAAACGCTGGGAAACAGCTGCACAGTATCACTCTGGCTCTTGAAAGTTTATGAAGT-GAAGCAAACTA CCAAAATAGCATTAAC >Condylura_cristata CTTTTCTGATCTAATGAAAATCTAGTGTTGGTCATTATGCAAAATTGTGATATTTAATTCATAGGGCTATCTCTCAGTTT CAAACTATCTC---ATCAATCATCTACAGTAATTAAATA----AAATGTCTTAAT--TTGATGGATAGTCAGAAGGATGT GATTTCGACTCATATTCTGAATACTTTATACATGGGATTTTTA--ATTTGTCT-----AAGGAAAATCTTGCAGTTA-TT ---TTATTG-AAGCTT---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------AA-TCTGCTTC-- --ATTTC-AATTG-TAAGTAATATGGAAGCTGACGAGCATTACAGAC-TTCAGAATAGAAGGA-TACTTAAAG------- -------------TTCCTACCC-TTTTATAGACGAAGAAAATGAGGCTAACTTGCCCAAGGTCACTCACTTGGAGGCATA TCAGAAATTTGTACGAATTCTCAGTTCAGAAAGATTCTCGTCTTGCCATGTTGGTCTG---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------GGATCATCCCTTCTTAAACATCAAAGGGAGTACAACCAGTCTC TGACTTAATAGGACTAGAATGACTTTATTATTAAATGGTCCAAACTATAAGGTTAAGTAGGAGTTC--ATAAATAATGTG ATTAATAC--TTTTTGTGTCCATGTGCTTTGTCTCTGCATAA-TTG-GATGTGA-ACACAGTTTGCAGTGGCT---GAGA CCCTGTTCTTTGTAAATGCTACGCAACAGCTGTCCACTGTTACCCTGATTCTTGAAAGTTTATGTAGT-AAAGCAAACTA CCAAAATAGCATTAAC >Uropsilus_gracilis CTTTTCTGATCTAATGAAAGTCTAGTGTTAGTCATTAAGTAAAACTGTGCCATTTAATTCTTAGAACTGCCTCTCAATTT CAAACTAGCTC---ATTAATCACTTACAGTATTGAAATA----AAATGTCTTTAT-GTTGATGGATGATTGGAGGGATG- -ACATCAACCCAGATTCTCAATATTTCACATATGGGATTTTTA--ATTTGTCTG----AGGGAAAAACATGCAGTTA-TT ---TTAATG-AATCTT---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------AA--ATGATTT-- --ATCTC-AACTG-----TAATCTGAAAGGTGATGAACATCATAAACTTTTAGACTAGCAGGA-CCATTATAGGTTAT-- --ATAATATTCTATTCCCATGC-TTTTATCAATGAAAAAAATGAGG----------CAAGTTCACTTCATCGGAAGCATA TCAGGAACTTTTACCAATTCTCAGCCCAGAAAGATTCTCACCATGTCATGTTGGACTG---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------GGGTTATCTCTTCTTAAACATCAAAGGGAGTACAACCAATCTT TGACTTAGGAAGACTAGAATGACTTTATAATTAAATGTTTCAAGCTATAAGGTTAAGTAGTAGTTCCTATAAATAATGTG ATTATTAC--TTTTTGTGTCCATGTGCTTTGTCTCTGCATAA-TTG-GATGTGA-ACATGGTTCACAACGGCT---CAGA CCCTGTTCTTTGTAAATGTTATGCAACAGCTGTACAGGATCACCCTGACTCTTGAAAGTTTATAAAGT--AAGCAAACTA CCAAAATAGCATTAAC >Galeopterus_variegatus TTTTTCACATCTGATAAAAACCTAGGGTTGCTCGCCATGCAAAATTATGATATTCAATTCACAGCATTGGG--TCAATTT CAGGCTATCTC---ATTATCCATTTTTAGTAATGAAAGA------ATGTCTTTATTCTTGATGGCTGAGCAGAGGGATG- -ACATTAACCCATATCCTGAATATTTCACACATGGGACTTTTATAATTTGTCTCT--AAAGAAAAACCTTGCAGTCTGTC ---CTATT--AATCTT---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------AA-TCTGTTTC-- --TTTTC-AACTA---ACTAA-CTGAAAGGCAAAAAGGATCACAGACTTTTAGATAGGGAGGG-CCTTTACAGACAAT-- --CTAA------------ATCC-TTTTATAGATGAAGAAAATGAGGTTGA-TTTCTTAAGGCCACTCACTTGGAGGCATA TAAGGATCTTGTACCAATTCTCAGCCCAGTGATATTCCCA---------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------TTCTTAAACATCAACAGGAGCAAAAACAGCCTC TGACTTAA-ATGACTACAAGGGTTTTATTATTAAATATTTCAGGCTATAAGATTAAGTAGGGATTCACACAAATAATGTA AGTAATAA--TATTTGTGATCATGTGTTTTGTCTCTTCATAA-TTGGGATGTGA-GCATAGTTCATAGCAGCTAAGAAGA CCCTGTTCTTTATAAATGCTATGC-ACAGCTGCACAGTATCACCCTGGCTCTTGAAAGTTTATGAAGT-AAAGCAAACTA CCAAAATAGCATTAAC Horse21_LTR >ERV3-5-EC_LTR ---------------------------------------------------------------TGTTGGAGGAGGTCATC AAGAGGACGTGACCATGACCACCGGTTGACCCGCGAGCTGGACCC-GGGCAATCGGAGGCTCCTCACCCCCTCC--TGTC CTTGGAATGTACGTTCCACCCGCCTTTCCNCTCCCAGAAGCCGCTTCAAGGATACAGCCTTGAGAGAGTAATGTGTTGTT GAGACCATCTGGACTGNGTACGTGACTGAACCCAGTTAAGGCCTCTATATAAACT-----TTTAAGATTCTGGCGGGCGG GTGCGGAGATCTACTCATCTTGCGGCCGCCCAAGACAAGCCTCGTAAGTAAGTTCCCTTGCTTATTAAACCTGCCACCTA CCAATCTGGAGTGGTCTGCCTCTTTCTTCGGTCTCTCCTTGCCCTCCGTGTACGGGGGCCAGTTTCAGATTTCACCCGGG AAGCTCCCGAGGTTGCGAACCAACA------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------- >Canis_familiaris GTATTTTTGAGATATATTAGGAAAGTTTTGT-AAATATTAGTCACAT-GGGG---GAGGG---TACTGGATGAGGTCATC GAGAGAATCTGACCA------CCAGTTGACCAACAAGCTGGA-CCTGGATAATTGGAAATTCTTCAACCTTTCCCTTGTC CTTGAAATGTGAGTTCCACTTACCTCCCCTATGCTAGAAGCTTCCCCAAGGGTACAACTTTGAGATAGAAATGTGTTGCT GAGACCATCTGGACAGTATATGTAACTAAACCTAGTTAAGGCCTCT-TATAAACT-----TTAGAGATTCTGATGGGCAG GTGCAGAGTTCTACTTATCTTGCAACTGCCCAAGACAAACCTCATATGTAAGTTGCCTTGCTTCTTAAGCCCACCACCTA CCAATCTGGAGTGGTATGCCTCTTTCTTTGAGTTCTCCCTGAGCTCTGTATATGGAGACCTATTTCACATTTCACCTGGG AAGCTCCTGAGGTGGCAAACCAAAA---GGTGG---GTGGCAGTGGAATATTAAAAATGGGAAGCAGAGGGGATTCCCAG GTGGCTCAGCAGTTTGGCACCTGCCTTCGGCCCAGGGCGTGATCCCGGGGCCCTGGGATCGAGTCCCACATCAGGCCCCC TGCATGGAGTCTGCTTCTCCCTCTGCCTCTCTCTATCTCTCAAGAATAAATGAATAAAATCTTTTTAAAAAATAGGAAGC AG-AAAGAACATTCTGGTCAGA >Felis_catus GTATTTTTGAGATACATCAAGAAAGCTTGGT--AATTCTAGTCACATAGAGA---GATGG---TAATGTAGGAGGTCATC ATGAGAACATGGCCA------CCTGTTGACCCCTGAGCCGGGCCCTGGGCAGTTGGAAGCTCCTCAGCCCCTCACCTGTT GTTGGAATGTGCATTCCACTTACCTTCCTAATGCTAGAAGCTTCCCCAAGGGTACAGCTTTGAGATAGTAATGTGTTGCT GAGACCATCTGTACAGTATATGTGACTGAACCCAGTTAATGCCTCT-TATAAACCTTTTTTTAAAGATTCTGGTGGGCAG GTGCAGAGATCTACTCATCTTGCAGCTGCTCAAGACAAGCCTGAAATGTAAGTTACCTTGTTTATTACATCTACCACCTA CCAGTCTGGAGTGACCTGC--CTTTCTTCAGGCTCTCCCTGACCTCTGTAT-CTGAGGCCGATTTCACATTTTACCTGGG AAGCTCCTGATGTGGCAAACCAATG---GATGG---GTGGGAATGGGGTGTTAAAAATG--------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------GGAAGC AG-AAAGAACATTCTGCTCAGA >Manis_pentadactyla GTATTTTTGAGATACATTAGGAAAGCTCGGT-AAATTTTGGTCATGTAGAGA---GATGG---CATTGGAGGAGGTCATT AAGTTGATGTGACCA------GTGATTGACCCACAAGTGGGA-CCTGGGCAATGGGAG---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------- >Equus_caballus GTATTTTTGAGATACGTAAGGAAAGCTTGGT-AAGCTTTGGTCCTGTGGAAA---GATGG---TGTTGGAGGAGGTCATC GAGAGGATGTGACCA------CTGTTTAACCCACTTGCTGGA-CCTGGGCAATTGGAGGCTTCTCGCCCCCTTCCTTATT TTTGGAATGTGCATCCTGCTTGCTTTCTCCATGATAGAAGCTGCCCAAAAGAAACAGCTTTGAGATAGTATCGTGTTGTT GAGACCATCCAGATAGTATACGTGACTGAACCCAGGTAAAGCCTCT-TATAAACT-----TTTCAGATTCTGGTGGATGG GTGTGGAGATCTATTCATCTTGCAGCCGCTCAAGACAAGCCTTGTATAT--GTTCCCTTGCTTGTTAAACCTGCTACCTA CCAATCTGGAGTGGTCTGCCTCTTTCTTTGGTCTCTTCCTGCCCTCTGTGAATGGGGGCCCCTTTCAGATTTCACCTGGG AAGCTCCTGAGGTTGCAGACCAACA---GATGG---GTGGGAAGGGGATGTTAAAAATG--------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------AGAAGC AG-AAAGGACACTCTGGTCAGA >Ceratotherium_simum GTAGTTTTGAGATAGATCAGGAAAGCTTGGT-AAGCTTTGGTCATGTAGGAA---GATGG---TATTGGAGGAGGTCATC GAGAGGATGTGACCA------CTGTTTGACCTACTGGCTGGA-CCTGGGCAATTGGAGGCTTCTTGCCCGCTTCCTTGTC CTTGGAATGTGCATCCTGCTTGCCTTCTCTGTGCTAGAAACTGCCCCAAGGAAGCAGCCTTGAGATAGTAATGTGTTGTT GAGACCATCTGGACAATATACGTGACTAAACCC-GGTAAGACCTCTATGTAAACT-----TTTAAGATTCTGGCAGGTGG GTGCGGAGATCTGCTCATGTTGCAGCTGCTCAGGACAAGCCTCGTATGTAACTTCCCTTGCTTATTAAACCTGCCACTTA CCAATCTGGAGTGGTCTGCCTCTTTCTTTGGTCTCTCCCTGCCCTCTGTGAATGGGGGCTGGTTTTAGATTTCACCGGGG AAGCTCCTGAGATTGCAGACCAACA---GATGG---CTGGGAGTGGGATGTTAAAAATG--------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------GGAAGC AG-AAAGAACATTCTGGTCAGA >Sus_scrofa ATATTTTCAAAATACATCAGAAAAGCTGGGGAAAACTTGGGTCATAGAAAGG---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------GATGG---GCGGGCAT-GGATGTTAAAAATG--------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------GGAAGC AG-AAAGACTAATCTTGTCAGA >Bos_taurus AACTTATTGAGATACATTAGGAAAGCTTGA--AAACTGTGGTCATATAGAGG---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------GATGG---GTCAGCATGGGATGTTAATGATG--------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------GGAAGC AG-AAAGAGCAATCCAGTCAGA >Myotis_myotis GTATTTT-GAGATATATCAGGAAAGCTTAGT-AAGCTTTGGCCAGAGAGAGG---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------GATGT---ACAGGAATGCGATGGTAAAAATG--------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------GGAAGC AG-AAGGAGCATTCTGGTCAGA >Rousettus_aegyptiacus ATATTTTTGAGATGTATCAGGGAAGCTTGCT-AAGCTTTGGTCATGAAAAAG---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------GATGG---GTAGCACTGGGACTTTAAAAATG--------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------GGAAGC AG-ATAGAACCTTCAGGTCAGC >Condylura_cristata GCATTTGTGAGTCACATCAGAAAAGCTTGGT-AAGTTTTGATCACAGTGAAG---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------AATGG---GTAGAAATGAGACGTTAAAAATG--------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------GCAAAA AG-AAAGAACGCTTTGATCAGA >Erinaceus_europaeus NNNNNNNNTGTATACAATAGGAAGACTTGGT-AAACTTTTGTCATGTAGAGC---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------AGTGA---CTAGAATTGAGATGTTAACATTG--------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------GGAACA TT-TTAGAATATTCTGGGCAAA >Homo_sapiens GTATTTTTAG-----ATCTGGAAAGCTTGGTAAAGCATTGCTCATGTAGACG---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------GATGG---GTGGGAATGGGATGTTAACAAGG--------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------GGAAGC AGTAAAAAATATTCCAGTCACA Horse22_LTR >ERV1-4N-EC_LTR -------------------------------------------------------------------------------- --------------------TGAAGGGGTTCAGAACAGGCCTCCCCAAGATGTGCCACTTTGGCATGTGGAATATTTTGA GCTAAAGGCAATCNAGACCCTGTGGGCTCAAGAGAAACTTT-TACCTCTCCCTT---------AAAGAATTTAAATTGGG GGCCTTGCCCATAATAAGAGTTATTACCAGAAATAAATTTTT--------ATGACCTATCTGTATGGCAGGGCAAACCTC TAATTACTGAACATCTGCTCTTCTTATCATCCTGTGAATTACCCTCCTCCCCTCTGAAGCCTCAGGCCCCTATCCCATTC CTTAGCTCAAGATGGCATATATACCTCATTTTACCTTTTTGTCTCTGAACCTCTCATGTATGTGGGGTCTCTGACTCTCT CATGTATGTGGGGTTCCCGTATNTATGNAATTAAATTTGATTTTCTCCTGTTAATCTGTCTCAT---------------- -----------GTCAATTTAATTCTTAGACCAGCCAGAAGAACCTAGAAGGGTAGAGGAAAAT---TTCTTCCTCCCCCA CA------------------------------------------------------------------ >Equus_caballus GAGGTGAGTGGTACAGTCCAGGAGATTGGTTGGGAGAAGTAAAGCGGACACTA------GCAGTTATCTAGAAAATCAGG TCTGAGGAGA---GTGC---CGAAGGGGAGCAGAAGATGCCACTCCAAAATATGCCTCTTTGGCATAAAGATTATTTTGA GCAGAAAGCAATCAAGACCCAG-AGACTCAGGAAAAGCTTTCTTCTTCCCAATTAACTGCCTAAAAGAGTGTGGAAAGAG GTCCTGCACCAGGAAGAGAGCTA-TACCGGAGATGACTTTCT-CACCCGAGAGACTTCTCTGTATGGCAGGGAAAACATT TGCTCACCAAACATTTTCTCTTCTCCTCTCCCTGTGAATTGTCTTCCTCCCTTTTGAAGCCCCAGACCTTTATCCCTTTC CTTAGCTCAGGATGGTGTATAAGCCTCA-AGTGCCTGGCTGCCTTTGAA--------------------------TCTCA TATTTTTACGGGGCTCCCATACATATGAAACTAAATTTTTTTTTCTCTTGTTAATCCTTTTATT---------------- -------------ACAGGAGGATCTCAGGC-------AAAGACCTAGAAGGGTAGAGAGAAAACTATTTTTCTTCCCCTA CA---GTAC---ATTGATCTT-AGTCCA---AACTAGTGAAAGACTCCTAGAT-----AAGAAAAACG >Ceratotherium_simum GAGGTGAGTGGTACAGATCAGGAGATTGGTTGGGAGAAGTGAAGTGGGCAATA------GCAGTTATCTAGAAAATCAAG TCTGAGGAGA---GTAC---TGAAGCAGAGCAGAATATACCACCCCAAAATATGCCTCTTTGGTGTAAGGATTATTTTGA GCAGAAGGCATTCAAGACCCAGCAGACTCAGAAAAATCTTTCTTCCTCCCCCTGAACTTCCCAAAAGA-TGTAGAAAGAG GTCCTGTAGCAGCAAGAGAGCTACCACCAGGGATAACTTTTT-CATCTGAGAGACTTATCTGCATAGCAGGGCAAATGTT TGTTTACCAAACATTTGCTCTTCTTCTCTTCCTGTGAATTGTCCTCCTCCCCTTTGAAGCCCCAGACCCCTATCCCTTTC CTTAGCTCAGGATGGTATATAAGCTTCC-ATTGCCTGGCTGCCTTTGAG--------------------------TCTCC TATTTTTATG---CTCCCATATGTATGAAATTAAATTTGTTTTTCTCCTGTTACCCTTTTTTGT---------------- ----------------------------------------------GTGTGTGAGAGGAAGA----TTGGCCCTGAGCTA AN---NNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Myotis_myotis GAGGTGAATCACACAGTCCAGG----TGACTGGGAAAACTTAAGTGGGCAATA------GGAATTACCTAGAAAATCAGG ---------------------------AAGCAAAACATGTCACCCCAAAATAAGCCTCTTTGGCATAATGATTATTTTGA GCTGAAGGCAATCAAGG-CCAGCAGATTCAGGAAAAGCTTTTTACCTCCCCCTTAACTGCCTAAAAGAATTTAGA---GG GTCCTGCAG-AGGAAGAGAGCTACTACCAGAGATAACCTTTTATATC----AGATTTATCTGAATGGCAGGGAAAACACT GGCTTACCAAATATTTACTATTCTCATCTTCCTATGAATTGTCTTCCTCCTTTTTGAAG-CTCAGACCCCCATTCTTTTC CTTAGCTCAAGAACAT-TATAAACTTCA-ATTGCCTAACTACCTTGGAG--------------------------TCTTA TATTTTTATGGAGCTCCTGTATGTATAAAATTA-----TCATTTTTCTTGTTAATCTGTCTTTTCATT------------ ----ATGGTGGGAGGGGGTGGGTCTCAGCC-------AAGAACCTAGAAGGGTAGAGGGAAAATTATTTTTCTTCTCCTA CA---GCAC---ATTGATCTC-AGTCCA---TCCCAGTGAAAGACTCCCAGAC-----CAGA-AAACA >Rousettus_aegyptiacus GAGGTGAATCATACAGTTCAGA----TGACTGAGAGAGGTCAAGTGAGTAATA------GTAGTTATCTAGAAATTCAAG TCTGAGGAGG---GTAC---CGAAGGGGAATATAATATGTCACCTCAAAATTTGCCACTTTGGCATAAGGATTATTGTGA GCCAAAGGCAATCAAGA----GCAGATTTAGGAAAAACTTTTGACCTCCCTCTCAACTTCCTAAATGAATTTAGAAATGG ACCTTGTACCAGAAAGAGAGCTACTGCCAGAGGAAAGTTTCT-CATCCAAGAGACTTAGCTGCATGGTTAAGCAAATATT TGTTTACCAAACATTTGCTCTTC---TCTTCCCATGAATTGTCTTCCTCCCCTTTGAAGCCCCAGACCCCTGCTCCTTTT CTTAGCCCAGGGTGGTATATAAGCCTCA-ATTGCTTGGTTGCTTTTGAG--------------------------TCTCA TATTT-TATGGGACTCCTGTATGTATGAAACTAA-------TTTTTTTTGTTAATCATTTTTTTTTTTTTTTTTAAAATA TTACAGTGTATAGAGGTGGGGGTCTCAACC-------AAAAATCTGTAAGGGTAGAGAGAAAATTATTTTTGTTCCCCTA TA---GTAC---ATTGATCTT-AGTCCA---TCCTAGTAAAGGACTCCCAGATAAAAAAAAAAAAACA >Canis_familiaris GAGGTTGATGTCG--------------------------------GCGCAATA------AGAGTTATCTAGAAAAACAGG TCTGGAAAGA---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----GTCC---ACTGATC--------------CCAAAGAAGGACTCCCAGAA-----AAGAAAAACA >Felis_catus GAGGTTGATG---------------------------------GTGAACAATA------TCAGTTACCTAGAAAAACAGG TCTGGAGAGA---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----GTCC---ACTGATCTT-ACTCCC---TTCCAGTGAAGGACTCCCAGAA-----AAGAAAAACA >Manis_javanica GAGGTTAATGGTGTAGTTCAGGTGATTGGCTGGG-GAAGTGAAGCAGGCAATACTGCTGGCAGCTATCTAGAAAAACAGC TCTGGGGAGA---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----GTCC---GCTGAGCTTAACTCCC---TCCCAGTGAAGGACTTCCAGAT-----AAGACAAACA >Vicugna_pacos GCGGTTAGTGGTGTAGTCCAGGTGGTGGGGTGGGAAGAGTGAAGTGGGCCATA------GCAGCCGTCTAGAAAAGCAGG TCTGGG-AGA---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------CA---ACTAATCTT-ACTCCC---TCCCAGTGAAGGACTCCCAGTT-----AAGAAAAACC >Bos_taurus GAGGTTAGTGATT--ATCCAGGTGATTGGCC---AGTAGTGATCTGGACA---------ACAGCCATCTAGAAAAACAGG GCTT--GAGA---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----GTCC---ACTGACCTT-CCTCCCTCTTCCCAGTGAAGGACTCCCAGAT-----AAGAAAAACA >Condylura_cristata GGGAT---------------------TGGTTGGGAGATGGAAAGTGATCAATA------ATAACTCT---GAAAATTAAG ATCAAGGAGA---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----GATT---GCTAATCTTAACACCC----CTTAATGAAGGCCTTCCAGGT-----AAGAAAAATA >Solenodon_paradoxus GAGCT---------------------TGCTTAGGAAAAACATAGTGGGCAGCA------GCAGCTCTTGAGAAAATCAG- TCTTGGTAGA---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----GGTT---AGTGATCAT----------------------CTTCCTAAAT-----TAGA-AAATA >Homo_sapiens GGGGTTAGTG-----------------------GAGCAGTGAAGTGGGAAATG------GTAGCTATCTAGAAAGTTGGG TCTGGGGAGA---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----GTCC---ACTGATCTT-ACTTCC---TCCCTGTTAAGGA-TCCCAGAT-----AAGAAAGACA Horse23_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------TTTTTCCAGCTTTA--TTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTT TTGATATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTC---------------- ----------------------------------------------------- >Sus_scrofa TTCTTTCATGATAAATTCTTCACTGTTT------TATAGTCATTTATATTCATGACAGAT----TTTTAA---GAGTCTT ---TTTT----------------TGAGATTATAATTGGCAAATA---------CTAGTTTCAGGTGTACAACATAACGAT TCAATATTTGTGTGTATTGTGGAATGATCACTACAATAAGTCTAGTCAACACC--------------CAATCTT---ATA TCAGGAAC-----TCAAGTGAACGAGGTTGGGCTTTAAGGAAAGAAACATCAA >Tursiops_truncatus TTC---------------TTCACTGTAT------TATAGTCATTTATATTCATGACGAAT----TTTCAA---CAGTCTT ---TTTATTTTT-----------TTGAGATATAATTGACATATAA-TACTTTATTCGTTTCAGGTGTACAACATAATGAT TCAATATTTGTATATTTTATGGAAAGATCACCACAATAAGTCTAGCTAACACC--------------CAATCTT---ATA TCAGGAGC-----TTAATTATATGAGGTTGGACTCTGGGGAAAGAAACATCAA >Equus_caballus TTCTTTTATGACAGATTCTTCATTGTAC------TATAGTCATTTACATTCATGGCAGGC----ATTTAA---CAGTCTT ---TTTACTTATTTATTTTTTAATAGAGATATAGTTGATATATAA-AATTATATTAGTTTCAGGTATACAACATAATGAT TCGATATTTGTATATATTGTGAAATGATCACCACAATAAGTCTAGTCAACATC--------------CAATATT---GTA TCAGGAAT-----TGAATAGTATGAGGTTAGGCTCT-GAGACAGAAATATCAA >Ceratotherium_simum TTCTTTTATGACACATTCTTCATTGTAT------TATAGTCAT-TATATTCATGATAGAC----TTTTAA---CAATCTT ---TTAATTTCT----TTTTAAGTTGGAATATAATTGACATATAA-CATTATATTAGTTTCCGGTATACAACATGAAGAT TCAATATTTGTATCTATTGTGAAATGATCATCACTGTATGTCCAGTTAGCATC--------------CAACGCT---ATA TCAGGAAT-----TGAATTGTGTGAGGTTGGGCTCT-GAGAAAGAAACATCAA >Canis_familiaris TTCTTTTATGACACACTTTCGGTCGCAT------TATAGTCATTTATACTCCTAACAGAC----TGTTAA---CA-TCTC -------------------------------------------------------------------------------- -----------------------------------------------------------------------------ATA TCGAGAAT-----TGAGTTGTGTGAGGTCGCATTCT-GGGAAAGAAACATCAA >Felis_catus TTCTTCTATGACACGTTTTTCGTTGTGTTACATATATAGCCATTTATACTCAGG--AAGC----ACTTAA---CA-TCCT -------------------------------------------------------------------------------- -----------------------------------------------------------------------------GTA TCAAGAAT-----TGAATTGTATGAGGTTGCTCTCT-GGGAAAGAAGCATCGA >Manis_pentadactyla TTCTTTTATGACACA---TTCATTGTGT------TATAATAATTTATATTCATGGCAGAC----TTTTAG---CAGTCCT -------------------------------------------------------------------------------- -----------------------------------------------------------------------------GTG TCAGGAAC-----TGAGTT-TAAGAGGTTAGGCTCT-GGGAAAGAAACATCCA >Myotis_myotis TTCTTTTAGGACTCATTCTTCATTGTAT------TATAGTCATTTATACTCACCCCAGGC----TGTTAA---CAATTTT -------------------------------------------------------------------------------- -----------------------------------------------------------------------------GCA TGAGGAAC-----TGAATTGTGTGGGACTAAGCTCT-GGGGAAGAAACATCAA >Rousettus_aegyptiacus TTCTTTTATGATACATTCTTCATTGTGA------TATAGTCATTTGTACTCATGACAGAC----TTTTAG---CAATCTT -------------------------------------------------------------------------------- -----------------------------------------------------------------------------GTA TCAGGAAA-----TGAATGGTATGAAGTTCAGCTCT-GGGAAAGAA----CAA >Crocidura_indochinensis GTATTTTATGACACATTTGTGATTGTAT------TATACTGCATTGCATTCATGAGAGACTTTTTTTTAC---CAATCTT -------------------------------------------------------------------------------- -----------------------------------------------------------------------------ATA TTAGGTAT-----TGAATTGTACAAGTTTGGGCTCTAGGGGAAAAATTGACAA >Sorex_araneus NNNNNNNAAGACCCATGTATTATTGTGT------TACTGTACTTTGCATTCATGAGAGAC----TTCTAA---CAATCTT -------------------------------------------------------------------------------- -----------------------------------------------------------------------------GGA TCAGGAATTGAACTGAATTGTATGAGGTTGGGCTCTAGGGGAAAGA--ATCGA >Homo_sapiens TTTTCTTGTGACACATT-TTTATTGTAT------TAAAGTTACTTATATTTATGACAAGC----TTTCCA---TAATTAT -------------------------------------------------------------------------------- -----------------------------------------------------------------------------GCA TCAGGAAT-----TGCACTGCATGAGGTTAGGCTCT-GAAGAAGAAACATCAA Horse24_LINE >L1MA9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------TTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTG TACAACGTGATGTTTTG-ATATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCA CATAGTTACCA--TTTTTTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAAATTTCAAGTATACAATACAGT ATTATTAACTATAGTCACCATGCTGTA----CATTAGATCTCCAGAACTTATTCATCCTGCATAACTGAAACTTTGTAC- -------------------------------------------------------------------------- >Sus_scrofa ACAATCTATCATCATG--TTAAATGGCAATATGTT--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------TTAAAT TAAAGATGTTT---AAAGTACACGTCT-----TTTTACTGG-----AACTGACA---CAACATCATACTGATTTCAGGTG TACAACATAATGATTTGAATATTTGCATATATTACAAAATGGTCACCACGATAAGTTCACTTA--ATTTCCATCTCCATA CCTAGTTATGT--ATTTTTTTATTTTGATGGAAAC--TTAAGATTCACTCTCCTGGCCACGTTCAAATATGCAATAGAGT ATTATTACATT--------------------CATTACATTCCCATGA--TGTTCACTTT--ATAACTAGAAATTTGTAC- --AATG--------TATGTCT---TGATGCCGCAAGTTCAAATCTTCACATAAATCCTTTAGTAAAACAGATTC >Bos_taurus ACAATCTGTCATTCTGAATTAAAAGACAACATGTT--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------CTTAAT TGAAAATGTTT---AATGTACACATCT------TTTACTGAGGTATAACTGACA---TAATATCATATTGCCTTTAGGTA TACAACATAACAATTTGAATATTTGTATATATTGCAAAATTGTCACCACAGTAAGTCCAGTTA--ATATCCAT-ACCATA ACTAGTTACAA--TGTTTTTTCTTTTGATGAAAGCTTTCAAGATGCACTTTC-------------AATATGCAATGCAGT ATTATTAACTAGAATCACAGTGTTGTATGTACATTACATCC---------ATTCATTTT--ATAACTGGAAATTTTTAC- --AATGTATTAATACATGTCT---TGATGCCTCTAATTCAAATTCACATATTAACCCTTGAGTGAAACATATTT >Equus_caballus ACCATCTACCATTCTGAATCAAAAGGCAGTATGTT--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------TCTAAT TAAAGATATTT---AATGTACA--TCT---TTTTTTATTGAGGTATAATTGACA---TGACATTATACTAGTTTCAGTTG TACAATATAATGACTTG-ATATTTGTCTATATTGCAAAACGATCATCACAATAAGTCCAGTTA--ATGTCCATCACCATG CACAGTTACAA---TTTTTTTCTTGTGACGAGAACTTTCAAGATCCACTTTCCCAGCTACTTTCAAATGTGCAATACAGT ATTATCAACTATAGTCACCATGCTCTA----CATGACATTTCTATGATTCATTCATTTT--ATAACTGGAAATTTGTAC- --AATG------TACATGTCT---TGATGCCTCTAATTAAAATTCTCATATAAATCCTTCAGTAAAATAGATTT >Ceratotherium_simum ACAATCTATCATTCTGAATTAAAAGGCAGTACGTT--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------TTTAAT TAAAGATGTTT---AATGCATATGTCT---TTTTTTATTGAGGCATGATTGGCA---TAACATTACATTAATTTCAGTTG TGCAACATAATGATTTG-ATATTTGTATATATTGCAAAATGATCATCACAATAGGTCCAGTTA--ATGTCCATCACCATA CAGAGTTACAAAATTTTTTTTCTTGTGATAAGAACTTTCAAGATCCACTCTCCTAGCTACTTTCAAATATGCAATACAGT ATTACTAACTATAGTCACCATACTGTA----CATTATATCCCTATTATTTATTCATTTT--ATAACTGGAAATTTGTAC- --AACG--------TACATCT---TGATGTCTCTAATTCAAATTCTCATATAAATCCTTTAGTAAAATAGATTT >Canis_familiaris ATAGCCTATCATTCTGAATTAAGGGACACTATATT--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------TGTAAT TAAAGATGTTT---AATGTAGATGTCT----------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------TGATGCTTCTAATGTAAATCCTTATATAAATCCTTTGATAATACAGATCT >Felis_catus ATAAACTATCAATGTGAATTAAAAGACACTATGTTGGGGGGTGGCTGGCTGGCTCAGCTGGTGAAGCATGTGACTCTTGA TCTCGGTGTTGTGAGTCCAAGCCCCATGTTGAGTATGGAGATTACTTAAAAAATAAAATCTTAAAAAATAAAAATAAAAG ACACAATGTTTTTGTTTGTTTTAAAGTTTATTTATTTTGAGAGAAAGAGAGAGAGACAGGGTATTTGAGCAGGTGAGGGG CAGAGAGAGAGAATCCCAAGTAGGTTCCACACTGCCAGCATAGAGCCTCACACAGGGTTCAAACCCACAAAATGTGAGAT CATGACCTGAGCCGAAGTTAAGAGTCAGACACTTAACTGACTGAGCCACCCAGGTGTCCCAAAGACACTATGTTTTTAAT TAAAGATGTTT---AATGTAGGTGTCG----------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------TAATGCTTCTAATGTAAATTCTTGTATAAATCCTTTAATAAAAAAGATCT >Manis_pentadactyla ACAATCTATCATTCTGAATTACAAGGCAATTTGTT--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------TTTCAT TAATGATGTTT---AACGTAGATATCT----------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------TGATGCTTCTGATGCAAATC-------------TTTAGTAAAACAGACTT >Myotis_myotis ACGA----TCAGTCTGAGTTAAAAGTCAGTATGTG--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------TTTAAT GAAAGAT-TTC---AATGTGCATGTCT----------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------TGATGCCTCTCATTCAAATCTTCATATAAATC-TTTAATAAAACAGATTT >Rousettus_aegyptiacus ACGCTCTACCCTTCTGCGTTAAATGGCAAAACGTT--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------TTTAAT CAAAAGCGTTT---GATGTACATGTCC----------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------AGATGCTTCTAATGCATATTTTCATATAAATCCTC-AGTAAAACCGATTT >Solenodon_paradoxus ACTA----TTATTCTGAATTAAAAGAAAATGTGCT--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------TTTAAT TCAAGATGTTT---TATGTACATGTTT----------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------TGATGTTTCTAATTTAAATCCTTGTATAAATCCTTCAGTAAAACAGATTT >Sorex_araneus GCAA--TGTCTTCCTGGGTCAAAATATTG---TTT--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------TAAAAT CAAAGATGCTT---AAAATA-----CT----------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------AGATACCTTGAATTTAAACTC------------TTGGATACAACAGATCT >Homo_sapiens ACAATCTATCATTCTGAATTACAAGGCAAGGAGTT--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------TTTAAT TAAAGACATTT---AATATACATGTCA----------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------CGATGCCTCTAAGTCAAATTCTGGTGTAAACCTTTTAGTAAAAGAGATCT Horse24_LTR >LTR21_EC -------------------------------------------------------------------------------- -----------------------------------TGTGATATTGTGAT-TTATAAGAAATATATATATTTGGTCATTCA GATGACCAAAATATATTTCTCATATATATTTGGTCTTCGTCCACA------GTTCCTGGCTCACAGCTCCCAAAACCCTT GGAATTTCCTGAGCAATAAGAGCAATGGGAGCATCTTTTGTTATAATATTTGGTCTCTTGTCCTCAGTTCCTGAAATTNC TTCAGAGCCATAAAGGTGAAATGGGTGTCTTGTTATTCATAACAAGCCCCT----------------------------- ----------------TTCCACCACAACTGGGTTTATGTTAATGAGGTGACTTTTGGAAAGCACCTAAGGATGGGGGCTG GTTGCCAGGGGAACCAACCAT--GAATAGAGGGTTGGAACTTTCAGTCCCACCCCCT-GATTTCTGGGGAGGGGAGAGGG GCTGGAGGTTGAATCAATCACCAATGGCCAATGATTTAATCAATCATGCCTATGTAATGAAGCCTCCATAAAAACCCAAA AGGAGGGGGTTCAGAGAGCTTCCAGGTTGGGGAAC-----------CA-GAACACTTCCACATGCCACTGTGCTGGGCCC CAAACTCCACGAGGACAGAAGCTCCTTTGCTTCAGGACCTTGCCCTATGTATCTCTTCCATCTGGCTGT---TGATTNAT ATCCTTTAATATCCTTTGTAATAAANTGGTAATC------TAGTGAGTAAACGGGTTTCCTGAGTTCTGTGAGCCACTCT AGCAAATTAA--TCAAACCCAAGGAGGGGG----TCATGGGAACCTCTGATTTATAGCCAGT-NGGTCAGAAGCACAGGT AACAACCTGGGCTTGCGATTGGCATCTGAA-------------GTGGAGGGCAGTCTTGTGGGACTGAGCCCTTAACCTG TGGAATCTGATGCTATCTCCGGGTAGATAGTGTCAGAATTGAGTTGAATTGTAGGACACCCAGCTGGTGTCCGAGAATTG CTTGTTGGTGTGGGGAA-------------------ACCCCC--------------NCACTCACATTGGAATTGG-GTCC A---------------------------------------------------------------------------- >Canis_familiaris TTTCTGTTATGAGCCAGGTAGT---------------------------------------------------------- --GGTTATAGACCAGCTGGGTAGC-------------------------------------------------------- --TAGCT-TATAATATTTCTCATGTATATTTGGTCTTTGTTCAAA------GTAACTGGCTCACAGGTCTCCAAACCCTT GAAA-TTCCTGAGAGATAAGAACAATGGAAGCATTTTTTGTCATAATATTTGGTCTTTTGTCTTCAGTGTCTGAAATG-C TTCACAGCCATGAAAGTGAGATGGGTGTCTTATTATTCGTAACAAGTCCCT----------------------------- ----------------TTCCACCACTACTAGGTTTATGTTAATGAGATGATTTGGGGAAAGCACCTAAGGTTGGGGGCTG GTTGCCAGTGTAGCCACTCATGTGATTAGAGGGTTGGAACTTTCACTCCTACCTCCTTAACCTCTAGGGAGGGGAGAGGG GCTAGAGGTTAAATTGATCACCAGTG---------------------CCCTTTGTAATGAAGAATCCATAAAAACACAAA AGGATGGGGTCAAGAGAGCTTCTGGATTGATGAACAGATGGAGATTCAGGGAGAGTGGCACAC-CCTGAGAGCATGA--- -AACCTTT--CTGC---------TGTTTT--CCTGTACCTTGCCCTATGCATATCTTCCATCTAGCTGTTTCTGAGTAAT ATCCT---------TTTGTAATAAACTGGTCATC------TAGTAAGCAGAATA----TCTGAGTTCTGTGAGCTACTCT AGCAAATTAA--TCAAACTCAAGGGTCAGT-GTATCATTGGCACCTCCTAGCTATAGCTGGCTAATTTAGAGGTGTAGGT G--AACCTGAGCTTGTGACTAGCTTATGAAGT--------GGGGTGGGGGGCAGTCTTGTAGAACTGAGTCCTTTACCTG TGGAATCTCATATTATGTCCAGG----TAGTGTCAAAATTGATTTGA-TCGTGGGACATCCAG-GGGTGATAGAGAATTA CTCGAGTGGGAAGAGGAGGAGGAGAATTGCC------CCTCATTGCTACTCCCCAAACACACACAGTGGGACTGATGAGA AGAATCTTTTA---CACAC---CTTAATGAAATTC--AGTATTTTTGTTAAAAGGAAGTGTTCATTCATCCATTCAA >Felis_catus TTTCTGCTGTGAGCCAGGCAGT---------------------------------------------------------- -GGTTTATAGGCTAGCTGAGCAGC-------------------------------------------------------- --TAGCC-TTAGATACTTCTCTGGTATATTTGGTCTT--TCCAAA------GTGGCTGGTTCACAGCTCCC-AAACCATT GGAATTTCCTGAGAGATAAGAACAATGGGAGTATCTTTTGTCATGATATTTGGTCTTTTGTCCTCAGTTCCTAAAATT-C TTCAGAGCCATAAAGGTGAGATGGGTGTCCTGTTATTCATAACAAGCCCCT----------------------------- ----------------TTCCAACACTACTAGGTTTCTGT---TGAGGTGACTTTGGGAAAGCACCTAAAGATGGGGGCTG GTTGCCAGTGGAGCCAACCATGTGATTAGAGGTTTGGAACTTTCACTCCTACC-CCTTAACCTCTAGGGAGAGGAGAATG GCTACAGGTTGATTTGCTCACCAGCGGCCAGTGATTTAATCAACCATGCCTATGTAATGAAGACTCTATAAAATCACAAA ATGATGAGGTCCATAGAGCTTCTGGACTGGTGAACAGGTGGAGATTCAGGGAGGTTGGCACCC-TCTGAAGCCATGA--- -AACCTAT--ATGC---------CCTTCT--CCCATACTGTGCTCTATGAATCTCTTCCATCTGGCTGTTTCTGAGTTAT ATCCT---------TTTATAATAAACTGGTCATC------TCACAAGCAAAATATTTTTCTGAGTAATGTGAGCTGTTCT AGCAAATTAA-----AACTCAAGGGGCAGG-GGATCATTGGAACTTCTTTTTTATAGCTGGCTAA-TTAGAAGTGCAGAT GATAATCTGAACTCGTGACTGGCAT-TGAAGT--------GGGGTGGGGTGCAGTCTTGTGGGACTGAGCCCTTCACCTG TGGAATCTGACATTATCTCCACG----TAGTGTCAGAACCGAG-TGGATTGTAGGACGCCCAGCAGGTGACGGAGAATTG TTGAGTGGGGAGAGGAGG-AGGAGATTTGCCACCCC-CCACCTCCCGTGCCCCAGAACACACACACTGGAATTGGTGAGC TGAACCTTTTA---CACAC---TTTAATCAGATTC--AGTATTTTTGTTAAAAGGAAGCGTTTATTCCTCCATTCAG >Manis_pentadactyla NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNN---NNNNN---NNNNNNATTGTGATTTTATAAGAA--ATATATATTTGGTTATTCA GATGACTAACATATATTCCTCATACATATTTGGTGTTTGTCCATGGTCTTTGTTCCTGGCTCACAGCTCCC-AAACCTTT GGATTTTAGTAAGCAAT-AGAGCATTGGGAACATCTTTTGCCATAATATTTGGT-TTCTGTCCCAAGTTCCTGAAATTGC TTCAAAGTCATTAAGATGAAATGGGTGTCTTGTTATTCATAACAATTTCCT----------------------------- ----------------TGCCACTATAACTTGACTTATGTTAATGAGATGGTTTTTGGAAAGCACCTAAGGATGGGGGCTG ATTGCCAGTAAAGCCAACCAT--GAATAGAAAGTTGGAACTTTTAGTCCCACC-TCTCCACCTCTGGGGAGGGGAGAGAA GCTAGAGGTTGAATCTACTGCCAATGGCCAATGACTTAATCAATCATGCCTATGTAATTATGCTTCTATAACAACCCAAA AGGACTGGGTTGAGAGAGCTTCCAGACTGGTGAACACATGGAGATTCAGAGGGAGTGGCACAC-AGAGGGGGCATGG--- -AAACTTC--ATAC---------CGTTTCCACCTATACCTTGTCCTATGTCTCTCTTCCATCTGGCTGTTCCTGTGTTAT ATCCC---------TTTATAATAAACCTGTAATC------TAGGAATCAAAATGTTTTTCTGAGTTCTGTGAGCTGCTTT AACAAATTAAAGTCAAGCTCAAGGGGGAGGCTAATCATAGGAAACTTCTATCTATAGCTGCTCAG-TCAGAAGCATAGGT GATAACCTGGACTTTTGACTGTTATCTAAAGTGGGGTGGAGGAGTGGGGGACAGTTTTGTATGACTGAA-CCTTCATCTA TGGGAGCTGAGGCTATCTCCAGGTAAACAGTGTCAGAATTGGTTTGAATTGCAGGACATCCAGCTGGTGTTGGAGAATTG CTATGATATGCACA-----------------------------------CATTCAGAGACATACACTGGAATTGGTGAGT GGAACCTTCTA---TAGAC---TTTAATCGAATTC--CATTTCTTTTTGAAA--GAAGTGCTCATTCATCCATTCAA >Sus_scrofa TTTTTGCTATGAGTCAAGCACTCTACTTGCCACCTGCAATACAAAGAGGAGGAACCCAGACAGAATCTCTTTATTCAAGG AATTTTTTAGACCAGTTGGGAAAA---CAAAT---GGCAATACTGTGA-TTTAGAAGAA--ACATATATTTGATCATTCA GATGACTAAAATATATTTCATATGTATTTTTTG-CTTTGTCTATG------GTTCCTGGCTCACAGCTCCCAAAACTCTT GGAACTTCCTGAGTGATAAGAGCCCTGGGAACATCTTTTATCATAA---TTAGTCTTTTGTCCTCAGTTCCTAAAA---- -------CCATAAAGGTGAAATAGGTGTCTTATTATTTTCAAAAAGGCCCT----------------------------- ----------------TCCCACCACAGCT-GGCTTATGTTAATGAACTGACTTTGAGAAAGTACCTAAAGATGGAGACTG GTTGCCTGTGGAGTCAATCCTGAGATTAGAGGGTTGGAACTTTCAGTTGCACC-CATCCACCT--AAGAGGAAAAGAGGA GGTGGAAGTTTAATCAATCACCAGTG-CTGATGA------CAATTATGCCTATGTAATGAAGCCTCCATACAATCCCAAA AGGACTGGGTTCA-AGAGTTTCTTGGTTGGTAGACACATGGAGATTCAGGAAGAGTAG-ACATGACAGACAGCATGG--- -AAACACA--GTGT---------CCTTCC--CTCATACCTC------TGCATCTCTTCAGGCTAGTTGTTCCTGAGTTAT ATCCT---------TTTATAATAAAGTGGTTATC------TACTAAGCCAACTGTTTCCCTGAGTCCTGTGAGTCCCTCT AGCAAATTAA--TCAAAACCAAGGATGGGG-GGATCATTAGAACCTCTTACTTATAGCCAGTCAG-TCAGAAGCACAGGT GATAACT--GACTTTTGACTGGCATCTGAAGTGGGATG--GGGGAGGGGGCCAGGCATGTAGGACTAAGCCCTTCACCTG TGGGATCCAACATTATCTCCAGGGTAATAGTGTCAGAACTGAGTTGAGTTGTAGGACATCCAGCTGTTG-TGGAGAATTG CTTA---------------------------------------------------------------------------- ----------------------------------------------------------------------------- >Tursiops_truncatus TTTCTGCTATGAGCTAGGTACTTTGCTTGGCACCTGCT----AAAGAGGAGGAATAGAGGCAGGATCTCTTTATTCATGG -AGTTTTTAGACCAGTTGGGAAGA---CAAAT---GACAATATTGTGA-TTTATAAGGT--ATACATATTTGATCATTCA AATGACCAAAATATATTCCACATATATTTTTTGTCTTTGTCCGTG------GTTCCTGGCTCACAGCTCCCCAAACCCTT GGAATTTCCTTAGTGATAAGAGCCATGGGAGCAT-TTTTATTATAATAATTCGCCCTTTGTCCTTAGTTCTTGAAA---- -------CCATAAAAGTGAAATGGGGGTCTTATTATTTACAACAAGATGCT----------------------------- ----------------TCTCACCACAACTAGGTTTATGCTAATGAACTGAATTTTGGAAAGCACCTAAGAATGGAGGCTG GTTGCCAGTGGAGCCAATCATGAGATTAGAGGGTTGGAACTTTCAGTCCCACC-CCTCCACCTCAGGGGAGAAGACTGGA GGTGGAAGTTGAATCAATCACTAATG-CCAATGATTTAATCAATCATGCTTATGTAATTAAGCCTCCTTAAAAACCCCAA AGGACTGGGTTCAGAGGGCTTCTGGGTTGGTAAACATGTGGAGATTCAGGGAGAGTGG---AT-GGAGACAGTATGG--- -AAGCTCA--GGGT---------CCTTTC--CCCATACCTTGCCCTATGCATCTCTTCCATCTGGCTGTTCCTGAGTTAT ATCCT---------TTTATAATAGACTGGTTATCTATCATTAGTATGGCAAATGTTTCTCGGAGTCCTGTGAGCC-CTCT AGCAAATTAA--TTGAACTCAAGGGTGGGG-GGATCATTGGAACCTCTGATCCATAGCCACTCAG-TCAGAAGCACAGGT GATAATC--GACTTTCAACTGGAATCTGGGGTG-------GGGGTGGGGGGACAGTCTGTAGGACTGAGCCCTTCACCTG TGGAATCTGTTGCTATCTCCAGGGAAATAGTGTCAGAATTGAGTTGAGTTGTAGGACATCCAGCTGGTGTTGGAGAATTG CTTG---------------------------------------------------------------------------- ----------------------------------------------------------------------------- >Equus_caballus TTTCTTCTGTGAGCCAGGCACTTTGCTCGGCACTCGGGATACAAAGAGGAGGAACACAAACAGGATCTTTTTATTCATGG -AGTTTATAGACCAGCTGAGGAGC---CAAAC---TGTGATATTGTGA-TTTTTAAGAA--ACATATATATAGCCATTCA GATGAGAAA-------------TACATATTTGGTCTTCATCCATG------GTTCTTGGCTCACAGCTCCCAAAATCCTT GGAATTT------------------TGGGAACATCTTTTGTCATAATAATTGATCTTTTGTCCTCAGCTCCTGAAATCAC TTCAGAACCATAAAGGTGAAATGTGTGTCTTGTTATTCATAACAAGTCTCT----------------------------- ----------------TTCTACCACAACTGGGCTTGTGTTAATGAGATGACTTTTGGAAAGCCCCTAAGGATGGGGGCTG GTTGCCAGTGGTGCCAACTGTGTGATTAGAGGGTTGGAACTTTCAGTGCCACC-CCTCTACCTTTAGGGAGGGGAGACGG GCTGGAGGTTGAATCATTCACCAATGGCCAATGATTTAATCAATCATGCCTACGTAATGAAACCACCATAAAAACCTGAA AGGACTGGGTTTGGAGAACTTCTGGGTTGGTGAACACGTGGAGATTCAGGGAGAGTGGTGAATGAGAGAGAGTATGG--- -AAGCTCT--GCAC---------CCTTTC--CTAATACCTTGCTTTAGGCTTCTCTTCCACCTGCCTGTTCCTGAGTTAT ATCCT---------TTAATAATAAACTGGTAATC------TAGTAAGCAAAGTGTTACTCTGAGTTCTGGGAGCTGCTTT AACAAATTAG--TCAAACCCAAGGAGGCGG-GAATCGTTGGAACCTTCAATCTATAGCCAGTCAG-ACAGGAGCACAGGT GATAACCAGAACTTGCAACTGGTGTCTGAAGTTGTGTT--GGGAGCGGGGGTAGTCTGGTAGGACTGAGCCCTTCACCTG TGGGATCTAATGCTATCTCTAGGTAAATAGTGTCAGAATTGAGCTGAATTGTAGGACACCCAGCTGGTGTTGGAGAATTG CTTGGATGTATGTGGAAA--------------CCCC-GCCCCACCCTCCCCCCCCAACACACATACTGGAATTGGTGAAG AAGATCTTTTA---GAGAC---CTTAATCAAATTC--AGTCTCTTTGTTAAAAGGAAGTGTTCCTTCATCCACTCAA >Ceratotherium_simum TTTCTGCTATGAGCTAGGCACTTTGCTTGGTACCCGATATACAAAGAAGAGGAACACAGACAGGATCTCTTTATTCATGG -AGTTCATAGACCAGTTCAGGAGC---CAAAC---TGTGATATTGTGA-TTTACAAGAA--ATATATATTTGGTCATTTA GATGATGAAAATATATTTCTTGTATATATATGGCCTTCTTCCACA------GTTCCTGGCTCATAGCTCCCCAAACCCTT ---------------------------GGAACATCTTTTGTCATAATATTTGGTCTTTTGTCCTCAGTTCCTGAAATCAC TTCAGAGTCATAAAGGTGAAATGGGTGTTTTGTTATTCATAAATACATTTCATAAATAAATACATAAATTACATAAATTC ATAAATACATTCATAAATACACCACAACTGAGCTTATGTTAATGGAATGACTTTTGGAAAGCCCCTAAGGATGGGGCTTA AT------------CAACCATGTGATTAAAGGCTTGGAACTTTAAGTCCCACC-CCTCCACCTCTGGGGAGGGGAGAGGG GCTGGATGTTGAATCATTCACTGATGGCCAATGATTTAATCAACCATGCCTATGTAATGAAGCCCCTATAAAAACCCACA AGGACTAGGTTTGGAGAA-TTCTGGGTTGGCGAACCAGTGGCGATACAGAGAAAGTGGTGCATGAGAGAGAGCATGG--- -AAACTCT--CCAC---------TCTTTC--CCCATACCTTGCCCTATGCATCTCTTCCACCTGGCTGTTCCTGAGTTAG ATCCT---------TTTATAGTAAACTGCTAATA------TAGTAAGCAAAGTGTTTCTCTGAGTTCTCCGAGCTGTTCT AGCAAATTCA--TTGAATCCAAGGAGCGGG-GAATAGTTGGAAC---TGATCTATAGTCCATCAG-TCAGGAGCACAGGT GATAACCTGAACTTGCGATTGGTGTCTGAAGTTGTGGGA-GGGAGTGGGGGCAGTCTTGTAGGACTGATCCCTTTACCTG TGGGATCTGGTGCTATCTCTAGGTAAAGAGTGTCAGAATTGAGTTGAATTGTAGGACACTCAGCTGGTGTTGGAGAATTG CTTGGGTGTGTGTGGAAA-------------------------TACACCTTCCACAACAGACACACTGGAATTGGTGAAT AGAAACTTTTA---AAGTC---CTTAATCAAATTC--AGCCTCTTTGTTAAAAGGAAGTGTTCAGTCATCCACTCAA >Myotis_myotis TTTGTGTTATGGGCCAGGCACT----TTGGCACC-AAGATATAAGGAGGAATTACAAAGACAAGATCTCTTTATTAATGG CAGTTTTTAGGCCAGTTGGGGATC---CAGGT------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------CTTAATAAAATTC--AGTCA----------------------------CATGCAA >Rhinolophus_ferrumequinum TTTCTGCTGTGAGCCAGGCACTGGGCTTGGTACCAGAGATACAAGGCGGAGTCGCACAGATAAGATCTCTTTATTAACAG -AGTTTATAAATCAGCTGGGGAGC---CAGAT------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------AGGAATCACATTT--GGTCTCTTTGTTAAAAGGAAGTATT--------CATTCAA >Erinaceus_europaeus TTTCTGCTATGAGCCAGGCACTTTGCTTGTTACCAAGAATACAAATCAGAACTACATTGACAGGTTCTCTTCATTCATGA -AATTTATAAGCCAACTGTGGTAC---CAGAT------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------TTTAACCACATTC--GGTTTCTTTGCATAAAGAAAGCACCTGCTCATCCA--CAG >Sorex_araneus TATCTGCTGTGGGCCAGGTGTTTTGCTTGGTCCCAGAAAAACAAAAAGGCATTATTCAGACAGGATCTCTTTATTCATGG -AGTTTCTTCACCAG-TGGGGATC---TAGAT------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------CTGAATTAATTTCAAAATTTATTTATTAAAATAAGCTGTTCATTTGTCCATTAAT >Homo_sapiens TTTCTGCTTTGTATGAAGCACTGTGCTTGGCTCCAAGGATATAACGATGAGAAATACAAACACGATGTCTTTAGTCTTAG -GGTTTACAAACCCTTTGGGGAGC---CAGAT------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------CTTAATCAAACTC--TT-------------------TGTTCATTCATCCATCCAA Horse28_LTR >LTR21B1_EC -------------------------------------------------------------------------------- --------------------------TGTGATATTGTGATTTATAATAAGAAATATATATTTGGTCTTTG-CTCCGTTTC TGGCACAGAGCTCCTAAAACCCTTGGAATTTCCTAAGTGATGAGA-------GCGATAAAGGTGTCTTTTGTTATGTTAA TGAGGTGACTTTTGGA-AAGCACCTAAGGATGGGGGCTGG-TTGCCAGGGGAACCAACCATGTGATTAGAGGGTTGGAAC TTTCAGTCCCA--CCCCGACCTCCGGGGAGGGGAGA-GGGGCTGGAGGTTGAGATCAATCACCAATGGCCAATGATTTAA -TCAATCATGCCTATGTAATGAAGCCTCCAT--AAAAACCCAAAAGGACGGGGTTCGGAGAGCTTCCGGGTTGGTGAACA CGTGGAGATTCGGGGAGAGTGGCGCGCCCGGAGAGGGCATGGAAGCTCTGCGCCCCTTCCCACATACCTTGCCCTATGCA TC-TCTTCCATCTGGCTGTTCCTGAGTTATATCCTTTT--ATAATAAACCGGTAATCTAGTAAGTAAAATGTTTCTCTGA GTTCTGTGAGCCGCTCTAGCAAATTAATCGAACCCAAGGAGG----GGGTCGTTGGAACCTCCGATC--TATAGCCAGTC GGTCAGAAGCACAGGTGACAACCTGGACTTGCGATTGGCGTCTGAAGTGGGGGGTGGGGACAGG--------TCTTGTAG GACTGAGCCCTTAACCTGTGGGATCTGATGCTATCTCCAGGTAGATAGTGTCAGAATTGAGTTGAATTGTAGGACACCCA GCTGGTGT-CGGAGAATTGCTTGGTGGTGTGGGGAAAAACTCC---------ACACACACATTGGAATTGGGTAC-CA-- ----------------------------------------------------------- >Canis_familiaris AAGAAAGGCAGGAGTCTG------------AGAAAACTTAAAGACTG--C-TTTCCACGGAAGCCTGAGCACTGGGAT-G GGGTGCAGTGGGGAGA---ATAG---TATGATACTGTCATTTTAAGTATATAATATATATTTGGTCTTCATCCCCATTTC TGGCTCAGAGATCCTAAAAACCTTGGAATTATCTAAGCAGTGAGA-------ACTATAAAAGTGTCTTTTGTTATGTTAA CGAGGTGATTTTTGCA-AAGTGCTTACATATGGGGCCTGGTTTGCCAGGACCTTCAACCTTGAGAGTGGAGGGTTGAAAC TTCCAGTCCCAGTCCCCAACTTCCAAAGGAGGGAAGAGGGCCTGGAGATTCAGTTCAAT--------------GATTTAT -TCAACCTGGCTTATGTAATGAAACCTCCAT-AAAAACCCAAAAAGAATGGGATTCAGAGAG-TTCTAAATTGGTGAACA TTTGGAGATTTGAA-AGAGTGGTGCTCTTGGTAAGGGCATAGAAGTTCCATGCCCTTCCCT-CATACCTTGCCCTTTGCA TT-TCTTCCATCTGGCTCTTCCTGAGTCCTATCATTTT--ATAAGAAACCAATGATCTAGTGAGTAAACAAATTTCCTGA GTTCTGGGAGCCACTTTAGCAAATTAATGAAACCTGAGGAGG----GGGTCATGGG-ACCTCTGATA--TTTAGCCAC-- --TCAGAAGTACAGGTAATATGCTGGGCTTGCCAACAGTGTCTGAAGCAGGACTGGGGAGGCAG--------TCTTATGG GACTGATCCTTTAACCTGTGGGATATGACGCTATCTCGGGGTAGA----GTCTGAATTGAGCTGATCTGTAGGACACCCA GCTGGTGTCCCTAGAATTCATTGATGCTGTATGGAACCCCTACACA----CAACACTCATATTGAAAT----TGCTCAGA ACACCAAAAGAG---ACAG---GAATTAAGAATGGAACTCCAGAGAGAGACGACTGACT >Lynx_canadensis AAGGAACACAGGGGGAAG------AGGGAGAAAAGTTTTGCAGATAG--C-TTTCCAGAGAAGCCTGAACACTGGGAT-G GGGTGAATTGGGAGGA---ACAG---TGTGATATTATAATTTAAGATATGAAATCTATATTTGATCGTCATCCCCATTTC TAAAA---------TGAAACCCTGGGAATTGCCCAAGCAATGAGA-------ACTATGAAGGTGTCTTTTGTTATGTTAA TGAGGTGACTTTTGGACCCAGGCTTACACATGGGGGTTGG-TTGCCAGGACCTTCAACCATGTGAGTGGAGGGTTGAAAC TTCCAGTTCCACTCCCCAACCTCCAAAGGAAGGAAAAGGGGCTGGAGATTGAGTTCAATCACCAGTGGCCAATGATTTAA -TCAATCATGCTTATATAATGAAGCCTCCATAAAAAAACCAAAAAGGATGGGGTTCAGAGAGCTTCTGGGTTGGTAAACA CGTGGAGATTTGGAAAGAGTGATGCTCTTGGAGAGGGCATGGAAGCAT--------------CATGTTTTGCCCTGTGCA TTCCTTCTTATCTGGCTGTTCCTGAGTTA-----TTTT--ATAATAAACCTGTGATCTAGGGAGTAAACAAA-TCTGTGA GTTCTGTGAGCCACTCCAGCAAATTAATCAAACCAGAGGAGG-----GGTCTTTGG-ACCTCTAATC--TATAGCTAGTC AGTCAGAAGTACAGATAATAATCTGGGCTTGCCACCGGTTTCTGAAGTGGGAGTGGGGAGGCTG--------TCTTATGG GACTAAGCCCTTAACCTGTGGGATCTGACGCTATCTCAGAGTAG----TGTCTGAATTGAGCTGAATTGTAGGACACCCA GCTGGTATCCCTAAAATTGCTTGGTGCTGTGTGGGAAACCCCCA------CAACCCTCATATTGAAATTGGGTGCTCAGA ACATCAAAAGAG---ATAC---GAACT-GGAGTGGACCTCAAGAGAGACATGACTGACC >Manis_pentadactyla GAGAAGGGCTGA-------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------CTCCAAAATCACTTGGCATTTCCTAAATGTACAGG-------GCTATCAAGGTGTCTTTTGTAATGTTAA TGAGGTAACTTTTGGA-AAGGTCCCAAAGATAGGGGCTGG--------------TGGCCATGTGATTAGAGAGCTGAAAC TTCCAGTCCCACCCTCTGACCTCAGAGGAGGTGAGA-GGAGCTGCAGATTGAGTTCAATCACCAATGGCCAGTGAGTTAA -TGAGCCACGCCTATGTAATGGAGCCTCCAT--AAAAACCCAAAAGGATGGTGTTTGGAGAGCTTCCAGGCTGGTGAACA CATGGAGGT----------------GCTGGGAGAGTACACAAAAGCTTGGTACCCTTCCCC-CATATCTTGCCTTGTGGA TC-TCTTCCATTTTACTGTTCCTGAGTTATACTCTTTT--ATAATAAGCCAGTGATCTAGTGAATAAACAGATTACCTGA -------GAACCACTCTGGCAAATTCATCAAATCCAGAGAGG------TTTCTGGGGACCTCTGATCTATATAGCCAGTT GGTCAGAAGTACAGGTAATAACTTTGACTTGCCACTGGTGTCTTAAATGGGA--------------------------AG AACTGAACACTAAATCTGAGGAATCTGATG----CACTGGGTAGACAGTGTCTGAACTGACTTGAGTTGTAGGACACCAA ATTGGTGTCCTAAAAATTGCCTG-TGTTGTGTGGAATCCCCTGA------CAATGCCCACATTGAAATTAGATGCTCAGA ACACCAAAACAG---ACAG---GAACC-AGAGTGGACCTCAGAAGAGTTCTGACTGACC >Sus_scrofa GAGAAGATCAGGGGAAAGTTCT--GAAAAGAAAAGTTTTGAACGCAGAACTTTTCCATAGAAGCCCAAGCACT-GAAT-G GGGTGCTGGGGGAGGA---AGAG---TGTGAAACTGTGATTTATAATAAGAAATATATAT-------TCGTCCCCATTCC TGACACAGAGCTCCTAAAATCCTTATAATTTTCTAAGTGAAGAGACTGATAGAAGATAAAGGTGTCTT-TGTTATGAAAG TGAGGTGACTTTTAGA-AAGTGCCAGGAGGTGGAGCTTCG-TTGCTTGGACAGCCAACCAAGTGATTCAATGGTTGGAAC TTCC----TCTTCTCCTGACCACTGGAGAGGGAGGA-GGTGCTGGAGATTAAATTCCATCAGCAAAGGCCAATGAGTTAG -TCAATCATGACTATGTAATGAGGCCACCATAGAAACGCAAAAAAGGATGAGGTTTGGAGGGCCTCCAGGGTGGTGAACA CATGGAGACTGGGGGCACGTGGGGCACTCGGAGAGAGCCTGGACACCCCATGCCCTTTCCC-CATAC--TGCCCCATGCA TC-TCTTCCATCTGGCTGTTCCTGAGTTATAGTCTTTTACATAATAAACTGGTAATCTAGGAAGTGAAAGATTTCTCTGA CTCATGTGGGCCACTTTAGCAAATTAATCTAACCCAAGAAGGGAGCAGGGTGTGGGAATCTTTGATC--TGTGGCCAACT GGTCAGAAGTACAGTTAACAAGCTGGGCTTGCAACCGATGCCTGAAGTTGTGGATGGGTGAAGGAGTGTAGTTCTAACAA GACTGAGCCATTGACCTGTGGAATCTGAATCTATCTCCAAGTAGATAGGGTCAGATTTGAACTGAAGGATAGGACATCCA GCTGGTGACCTGAGAATTGCTGGGTGCTGTTTGGGAAACTC----------------CACACTGAAATCAGGTGCTCAGG ATACCAAAAGAG---ACAG---AAACC-AGAGTGGACTTCAAGAGAGATGCAGCAGAGC >Bos_taurus GAGAAGAGCAGGGGAAAGTTCTGAAAAGAGGAGAGTTCTGAAGACAGAAC-TTACCAAAGCAGCCCGAGGACT-GGAT-G CAGTGCA----GGAGA---ACAG---GGTGCAACTGTAATTTATAATCAGAAACATGTTTTTGGTCTTCATCCCCATTTC TGGTATAGAGTTCTAAAAACCCTTGTAATTTCCTGAGTGATGAGA-------GCAATCAAGGTGTCTTTTGTTATGTAAA TAAGGTGACTTTCCTA-AAGTACCTAAAAAT--GTGTTGC-CAGCAGGGCTGGCCAACCAAGTGATGAAAGGGTTGGAAC TTCCAGCCCCATCTCCTGACCACTGGGGAGGAAGGA-GGGGCTGGAGATT-----CAATCACCAATGGCCAATGAATTAA GTCAATTATGACTATATAATGAAGCCACCAT-AAAAACCCCGAGAGGATGGGGTTTGGAGAGCTGCCATGGTGGTGGACA CATGGAGATTTGGGTAGCATGGTGCACTTGGAGAAAGTATGGATGCCCCTTGCCCTTTCTC-CATGTCTCGCCCTATGCA TCTTTTTCCATCTGACTGTTCCTGAGTTATATTCTTTA--ATAATAAACCAGTAATCTA---AGTAAAATGTTTCTCTGA GTTTTATGAGCCACTCTAGCAGAGTAATGAAACCCAAGGAGGAAG-AGGTTGTGGGTATCTCTAAGC--TATAGCCAGTT GGTCAGAAGTACAGGTAACAACCAGGGCTTGCAACTGACATCTGAAATTGGGGGCTGGTGGAGTGATTTAG---TCACGA GACTGAGCCCTTACCCTGTAAAATGTGAATCTATCTCCAGGTTGATAGTGTCAGATTTGAACTGAACT----GACAACAG GCTGGTGTCCTGAGAATTGCTTGGTGCTGTGTGAGAAACCCCCT------CAATACCCAAGCTGAAATAGGGTGCTCAGA ATACCAAAAGAG---GTAG---AAACT-GGAGTAGATCTCAAGACGAATGCAACTGAGC >Equus_caballus GAGAAGGGAATGGGAAAG------GAGGAGAAAAGTTCTGAAGGCAGAAC-TTTCCAGAGAAGCCTGAGCACT-GGAT-G GGGTATAATGGGGGGA---ACAG---TGTGATATTATGATTTATAATAAGAAACATATATTTGGTCTTCAACCCTGTTTC TGGAACCAAGTCCCTAAAACCTTTGGAATTTCCTAAGTAATGAGA-------GTCATAAAGGTGTCTTCTGTTATGGTAG TAAGGTGGCTTTTGGA-AAGCACCCAAGGATTGGGGCTGC-TTGCAAGGACAGCCAATTACGTGATTAGAAGGTTGGAAC TTAGAGTTCCACCCCCTGACCACTGGGGATGTCAAAGGGGGCTGGAGATTGAGTCCAATCACCAATGGCCAGTAATTTAA -TCAATCAGGCCTATGTAATAAAGCCTCCAT--AAAACCCCAAAAGAACAGGGTTTGGAGAGCTCCCATGTTGGTGAACA TACAGAGGTGCGGGGAGAGTGGCATGCTCAGAAAGAGCATGGAAACTCTGTACCCTTTCTC-CATACCTTGCC-TAAGCA TC-TCTTCCATC----------------------TTTT--ATAATAAACCAGTGATCTAGTGAGTAAACAGACTTCCTGA GTTCTGGGATCCACTCTAACCAATTAATCAAGCCTGAGGAGG----AGATCACGGGGACCTGTGATC--TATACGCATTC AGTGAGAAATACCGGTAACAACCTGAGATTGCGACTGGTGCCTGAAGTGGTGGGTAGGGGCAG---------TCTTATGG GACTGAGCTCTTAATCTGTGGGATCTGATACTATCAATGGGTCA----TGTCAGAATTGAG--GAACTGTAGG---CCCA GCTGGTGTCCTGAGAATTGTTTGGCGCTGTGTCAGAAACAGCCCCC----CAACACCCATGTTGAAATTGGGCACTCAGA ACGCCAAAAGAG---ACAG---GAACC-AGAGTGGACCTCAAGAGAGACACAACTGACC >Ceratotherium_simum GAGACAGGCAGGGGGAAG------AGGGAGAACAGTTCTGAAGGCAGAGT-TTTCCAGAGAAGCCTGAGCACT-GGAT-G GGGTGTGATGGGAGGA---ATAG---TGTGATATTATGATTTATAATAAGAAATATATATTTGGTCTTCGCTCCTGTTTC TGGCACCGAGCCCCTAAAACCTTTGAAATTTTGTAAGTAATGAGG-------GTCATAAAGGTGTCTTTTGTTATGTTAA TGAGGTAGCTTTTGGA-AAATACCTAAGGATAGGGGCTGC-TAGCCAGGACAGCCAACCTTGTGATTAGAGAGTTGGAAT TTCCAGTCCCACCCCCTGAC--CTAGGGATGTCAGA-GGGGCTGGAGATTAAGTTCAATCACCAACGGCCAACAATTTAA -TCAATCAGGCCTATGTAATGAAGCCCTCAT--AAAAACCCAAAAGAACAGGGTTTGAAGAGCTCCTGGGTTGGTGAACA TGTGGAGGTGCCAAGAGAGTGGCACACTCGGAAAAAGCATTGAAGCTCCGTGCCCTTTGCC-CATACCTTGCCCTGTGAA TC-TCTTCCATCTGGCTGTTCCCGAGTTATATCCTTTT--GTAATAAACCAGTGATCCAGTGAGTAAACAGGTTTCCTGA GTTCTGTGAGCCACTCTAGCAAATTAATCAAACCTGAGGAGG----GGATCATGGGGACCTCTGATC--TACAGCCATTC AATGAGAAGTACCAGTAACAACCTGACATTGAGACTGGTGTCTGAAGTGGGGGGTAGGCGCAG---------TCTTACGG TA-TGAGCCCTTAATCTATGGGGTCTGATGCTGTCTCTGGGTCAAGAGTGTCAAAATTGAGTTGAATTGTAGG-----CA GCTGGAGTCCTGAGAATTGCTTGGTGCTGTGTGAGAAACACTCCCCCCCACAACACTCACATTGAAATTGGGTGCTCAGA ACACCAAAAGAG---AGAG---GAACC-AGGGTGGACCTCAAGAGAGACACAACTGACC >Myotis_myotis GAGAAGGGCAGGGGAA--------GAGGGAGAAAGTTCTGAAGGGAGAGT-TTTCCAGAGAAGACTGAGCACT-GCAT-G GGGAGCAGTGGGAAAA---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------ACAG---GAACC-AGAGTAGACATCATGGGAGACACCACTGACC >Rousettus_aegyptiacus GAGAAGGGTAGAGGGAAG------AGGGAGAGAAGTTCTGATAGCAGAGC-TTTCCAGAGAAGGCTGAGCACT-GGATGG GGGTGCAGTGGGAGGA---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------ACAG---GAACC-AGA-TGGCCATCAACAGAGAGGCC-CTGACC >Erinaceus_europaeus GAAAAAGGCATTAAGGAG---------GAGAGAAGCTCTG-ACATAGAAC-TTTTCAGAGATGTCTGAGCAAT-GGAT-G GGGTGCAACAGGAGTG---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------GTAG---CAATC-TGAGCAGATCTCAAGAGAGTCATGACTGACC >Sorex_araneus TGAGAATGCAGAAAGAAG-------AGAAGACAAGCTCTGAAGACAGAAC-TTTCCATAATTATCTGAGCACT-GGAA-A AGATACAATGGATAGA---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------ATGA---GAACC-AGAGTGGACCTCTAGAGAGACATAAGGGACC >Homo_sapiens GAGAAGGGGAGACGGAAG------GGGAAGGAAAGTTCTGAAGGCAGAGG-TGTCCAGAGAAGCCGAAGCATG-CAAT-G GGAGGCACAGGAGTGA---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------GAGT---GAACT-----------TCAATAGACACACA-CTGACC Horse34_LINE >L1MA9_3END -------------------------------------------------------------------------------- -----------------------------------GTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTG GAGATCTAATGTACAGCATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTA AGTGTTCTCACCACAC-ACAAAAAAA-TGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCAT TTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAA TAAAGCTGGAAAAA------------------------------------------------------------------ ----------------------------------------- >Sus_scrofa ATTTCAAAGAACATTTGTTACATAACTTCAAC---------TAATTGAAACT--ATTGAAAATCAGTAATTTTT---TAA AAA-----CTGCAGTC---AA-AAGGTACAAA------------------CTTCCAGTTAG-------AAGTAAGTCCTT GGGATTTAATATACAGAATGGTGGCTGCAATTTATAATACTGTATTGCATACTTGAAATTTCCTAACAGAGTAGATCTTG AAAGTTCTCAACACAC-AAAAAAATA--TGTAACTATGTATGGTGGCTG--ATTGATGTTAGACATATTATGGTGATCAT TTCACAATATATACAGATACCGAATCATTATGTTTTACATTGGAAATGAATATAA-----ATATGTCAATTATAACTC-- -----------------AAT--AAAAAAGTAGTACAAA---AGAAC-----------------------TTT-GATGAAC CAAA--TGAGCTCATTAAATACTGACACT-AAACCTTCTTC >Bos_taurus ATTTCAAAGAACATTTGTTATATAACCTCAAC---------TAACTGAAACAGATTTGAGAATCAGTAA--TTT---AAA AAA-----CTGGAATC---AA-AAGGTACAAA------------------TTTCCAATTAT--AAATTAAATAAGTCCTG GGAATGTAATGTACGGAATGATGACTACAGTTTATAATACTGTATTGCCTACTTGAAAGTT--TAAGAGAGTAGATCTTA CATGTTCTCATCCCAAGAAAAAAAAAATTGTAACTATGAATGGTGACTG--ATGTTAATTAGAC-TATTGTGGTGATCAC TTGGCAATGTATGCAAATATTG-ATCATTATGATTTACACTTGAAGCAAATGTAA------TATGTCAACTACACATC-- -----------------AATTTAAAAACATAGTGCAAA---GGATC-----------------------CTT-AATGAAC TAAAA-TCAGCTCATTAAATACTAACATT-AAA-CGGCTTC >Equus_caballus ATTTCAAAAAACATTTGTTGTGTAACCTCAAC---------TAATTGGTGCAGAATTGAGAATCAGTAA--TTT---AAA AAC-----CTGCAGTC---AA-AAGGCACAAA------------------CTTCCAGTTAT---AAACAGATAAGTCCCT GGG-TGTAATGTAGAGCATAGAGACTATAGTTAACAATACTGTATTGTATATTTGAACGTTGCTAAAAGAGTAGATACTA AAAGTTCTCATCCCCC-CCAAAAAAT--TGTCACTATGTATGGTGATGG--ATCTTAGCTAGACTTATTGTGGTCATCAC TTTGAAATATATAAAAATATCAAATCACTATGTTGTACACCTGAAACTCATATAC---TTGTATGTCAATTATAACTC-- -----------------ATT-AAAAAATGTAGCGCAAA---GGATC-----------------------CTT-AATGAGC CAAAA-TTAGCTCATTAAATTTTG-CACT-AAAGCCTCTTC >Ceratotherium_simum ATTTCAAAAAACATTTGTTGTGTAACCTCAAC---------TAACTGGAGCAGAATTGAGAATCAATAA--TTT---AGA AAC-----CTGGAGTC---AA-AAGGTATAAA------------------ATTCCAGTTAT--AAAATAAATAAGTCATG GGGATGTAATGTACAGCATGACAACTATATTTAATAATATTTTATCGTATATTTGAAAGTTGCTAAAAGAGTAGATCTTA AAAGTTCTCATCATAA-GAGAAAAAAAATGTTAC-ATGTATGGTGATGG--ATGTTAACTAGACTTATTGTGGTGATCAT TTTGCAATATATACAAATATCAAATCATTATATTATACACCTGATACTCATATGA---CTTTATGTCAACTATACCTC-- -----------------TATAAACAAAAGTAGCACAAA---GGATC-----------------------CTT-AATGAAT CAAAA-TTAGCTCATTAAATTTTGACACT-AAAGCTTCTTC >Canis_familiaris ATTTCAAAGAATATTTGTTGTGTAACTTCAAC---------TCATTGAAACAGAACTGATAACCAGCAA--TTT---AAA AAA-----CACA----------GAGGCACAAA------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------AGATTAATTAATTAAAATTGGTTTATCAATT-AATTAAT CAAAA-TGGGTTTATCAAATTTTGACACTAAAAACTTCTTC >Felis_catus NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---------NNNNNNNNNNNNNNCTGATAATGAGTAA--TTT---AAA AAC-----CAA-----------GTAGCACAAA------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------AGATC-----------------------CTT-AATGAAT CAAAA-TTGGCTTACTAAATTTTGACACT-AAAGCTTCTTT >Manis_pentadactyla ATTTCAAAGAATATTTTTTGTGTAACCTCAAC---------TAACTGAAACAGAATTGAGAATCAGTAA--TTT---AAA AAG-----CAAA----------GTAGCAGAAA------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------AGATC-----------------------CTT---TGAGC CAAAA-TTAGCT-----AATTTTGACATG-AAAGCTTCTAC >Myotis_myotis ATTTCAAAGAGCATTTGTTGTGTGACCTGAAC---------TAGTTAAAATGGAATTGACAATCAGTAA--TTT---AGA AAA-----CAAAGTACTGTACTATAGCATAAA------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------TGATC-----------------------CTT-AATGAAC AAAAGTTTGGCTTATTAAATTTTGACACT-AAAGCTTCTTC >Rhinolophus_ferrumequinum ATTTCAAGGATCATTTGTTGTGTAAGCTCAAC---------TAACTGTAACAGAATTGACAATTAGTAG--TTT---AAA AAAAAAAACACAAAGA---ACTGTAGCACTAA------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------AGCTC-----------------------CTT-AATGAAC CAAAG-TTAGCTCATTAAATTTTGACACT-AAAGCTTCTTC >Condylura_cristata ATATTAAGGAATACTTCTTGTATACTCTTGAT---------TAATTGAAACACAATGGAGAATCGGTAA--TTT---AAA AAG-----CCAC----------TTACTGTAAC------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------AGATC-----------------------CTT-CATGGAC CAAAA-TTGGCT-AT-AAAATTTGAC----AAA-CTTCTTC >Uropsilus_gracilis ATGTTAAG---------CTATATAATCTCAATAATATACCACAATAGTGACACA----AGAATCAGTAA---TT---AAA AAT-----TCAC----------ATAG-ACAAC------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------ACATC-----------------------TTGAAATGAAC CCAAA-CTGGCT-ATCATACGTTGATATTAAAA-CTTCTCT >Homo_sapiens ATTTCAAAGAGCATTTGTTGTGTAACCTTAAC---------TAATTG-GACACAACTGAGAATCAGTCA---TT---TAA AAG-----AAAA----------ATAGCACAAA------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------GAATC-----------------------CTT-GATGAAC CAAAA-TTGTCTCTTTAAGTTTTGACAGT-AAA-CTTCTAC Horse36_LINE >L1MA9_3END -------------------------------------------------------------------------------- TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATATAC GT------ATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTACCATTTTTTT GTGTG--------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------TGGTGAGAACACTTAAGATCTACTC--TCTTAGCAAATTTCAAGTATACAATACAGTATTATTAA CTATAGTCACCATGCTGTACATTAGAT----------------------------------------------------- ----------------------- >Sus_scrofa TGTAAAATGGAGATACTAACTCCAGTTACATGAAATGATTGTTAAAGATAAA---ATAGAACATTTAAAT--------TT TTTAAATTATTTAATTGAGATATACTTGACATAT-AATGTTGTACTAGTCCTGGGAGTGCAGCAAAATGATTTAACATAT GC------ATATTCTGCAAAATGATTACAACAATAATTTTAGTTAAC--ATTTATCATCACACATAATTACAG-TTTTTT TCTTA--------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------TGATGAGAACTTTTAAGATCTACTCTTTCTTAGCAATATTCAAACATACAGTACAGTATTGTTAA CTATGGTCACCA------------------TGAGTATTAGCATAATT---AAAGCACTTAGGGCA-TGCTTAG--CATTT GGTAGAACTCAACCAATATTAAC >Tursiops_truncatus TGT-AAATGCAGATGATAACTCCAACTATGTCAAAGGACTGTTAAAGATAAG---TGAGATAGTACCTTT---AAAAATT TTTTAATTTTTTAATTGAGGTACACTTG--------ATATTGCATTAGTCTTAGGATTGCAGCATAATGATTTGATATAT GT------ATATTTTGCAAAATGATTGCCACAATGATTTTAGTTAAC--ATCTATCACCACACACAGTTACAATTTTTTT TCTTA--------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------TGATGAGAACTTTTAAGATCTACTCTCTCTTAGGAACTTTCAAATATACAATACACTATTGTTAA CTATAGTCACCA------------------TGA-TGATAGCATAACT---AAGGCGCTTGGAGCA-TGCTTAG--CATAT GGTAGAACTCAACTAATATTAAC >Equus_caballus TGTGAAATGAAGATGACAACTCCGGCTATGTCAAATGCTTGTTAAAGATAAG---AGAGATAGCACATAT---------- --------TTTTAATTGAAACTTACTTGACATAT-AACATTGTATTAGTTTTAGGTGTACAACATAATGATTTGATATAC GT------ATAGACTGCAAAATAATTACCACAATAATTTTAGTAAAT--ATCCGTCATCACACACAGTTATGA-TTTTTT TCTTG--------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------TGATGAGAACTTTCAAGATCTACTC--TCTTAGCACCTTTCAAATATCCAATAGGATATTGTTAA CTGTAGTCATCA------------------TGA--AATAGTGCCTTT---AAAGCACTTAGAGCAGTGCTTAGAACATAT AGTAGCACTCAACAAATGCTAAC >Ceratotherium_simum TGTACAATGGAGATGATAACTCCAGCTATGTCAAATGATTGTTAAAGATAGG---CAAAATAGCACATTT---TTAAAAA CTTTTATTTTTTAATTGAAACTTACTTGACATAT-AACATTGTATTAGTTTTAGGTATACAACATAATGATTCGATATAT ATAGAGAGAGAGACTGGAAAATAATTACCACAATAATTTTAGTTAAT--ATCCATCATCACACACAGTTATAA-TTTTTT TCTTG--------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------TGATAAGAACTTTTAAAATCTACTC--TCTTAGCAACCTTCAAATATACAACACAGTATTGTTAA CTGTAGTCACCA------------------TGA--GACATCACATTT---AAGGCACTTAGAGCACTTCTTAGAGCATAT GGTAGCACTCAACAAATACTAAC >Murina_aurata_feae TGTAAAATGGAGATGGTAATTCCAGCTATGTCAAGTGGTTGTTAAAGATATG---TGAGGTAGCATATTT---AAAATTG TTTT---CTTCCAATTGAGATGTACTTGACATAT-AACATTATATTAGTTTTAGATATACAACATGATCATTTGATATAT GT------ATCTATTTCAAAATAATTGATACAATAACTTTATTTAAA--ATTAATTATCGTATATAGTTGCAATTTTTCT TTTTGTGATGAGAACTTTTTATTTATATATTTTTATTGATTTCAGAGAGGAAGGAAGAGGTAGAGAGAGAGATAGAAGCA TCAATGATGAAAGAGAATCACTCACTGATAGGCTGCCTCTTGTACTCCCCTTCCTTCCCCCATCCATGGGGATCAAGACT GCAACCCAGGCATGTATCCTTGATCTGAATTGGATCTGGGGTCATTCAGTCCACAGGCTGACGTTCTATCCACTGAGCCA AACCAGCTAGGGCTATGATGAGAACTTTTGAGATCAGCTC--TCTTAGCTACTTTTAAATACACATTATGGTATTGTTAA GTATAGTCAACA------------------TGA--GATGACACATGT---AAGGCACTCAGGGCAATGCTTAG--CATAT GGTGGCACTCAGTAAATACTAAC >Pteropus_vampyrus TGTAAAACAGAGAT---AATTCTAGCCATGGCAAATGGTTGTTAAAGATATG---CAAAATAGCACATTT---AAAAAAT ATTTA--TTTTTAATTGAGATATACTTGACATAT-AACATTGTATTAGATTTAGGTGTATAACATGATGATTTGATATAT GT------ATATGTTGTGAAATGATTACCACAATAATTTTAGTTTAA--ATTAATCATTACATATAATTAAA--TATTTT TCTT---------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------ATGAGAACTTTTAAGATCTACTT--TCTTAGCTACTTTTAAATATACAATCTAATATTGTTAG TTATAGTTACCA------------------TGA--TTTAGCACATTT---AACGCACATAGAACACTGCTTAG--CACAT AGTGGCACTCAGCAAATATTAAC >Ailuropoda_melanoleuca TTT-AAATGGACATGAAAACTACAGCTATGTCACATGGTTGTTAAAGATAAG---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------TGAG-ATAAGCACATTT---AAGGCAC-TAGAACACTGCTTAG--CATAT GGTAGCACTCCACAAATATTAGC >Felis_catus TGT-AAATGGAGATGATAACTACAGCTATATCACATAGTTGTTAAAGATAAT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------TGAG-ATAAGCATATTT---AAGGCAC-TAGAACACTGCTTAG--CATAT AGTAACACTCCACAAATATTAAC >Manis_pentadactyla AGCTCAATGGAGATATTAACTCCAGCCGTGTCACATGGTTGTAAAAGATTAG---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------TAA--GACAGTGCACTT---AAAGTACTTAAAATACTGCTTAG--CATAA GGAAGCACTCAACAAATATTAAC >Condylura_cristata TGTTAAATGAAACTG--AATTC--GTTATGTCACATGACTGTTAAAGGTGTA---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------TGA--GATAGCACATTG---AAGGTACTTACAGCAGAGATAA---CATAT GATAGTCCTTAACAAACACTAAC >Sorex_araneus TGTTAGGTACAGATGATAAGTTCAACTCTCTTGTATG-TTGTTAAAGACAAG---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------AGA--AATATCACCTTT---ATGTCACTTAGAGAACAGTTAAG--CATAT GGTGATAATTAACAAATATTAAA >Homo_sapiens TGTAAAATGGAGATGGCAATTCCAGTTATGTCACATGATGGTTAAATGTAAA---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------TGA--GGTAGCACACTT---GAGGCACTTGGAATACTACTTAG--CACAT GGTAGCACTCAACAAGTGTTAAC Horse36_LTR >LTR17_EC -------------------------------------------------------------------------------- ---------------------------TGTTAAAAAATGATTAAAGAAGACAATTTAGGTGATACAAA-CAAACTTTATT TAACAC-TTCATGAAGTGGACAGTCTCCATTTCT--CCATTTGGAGAACTGCAAAATGGGGCAGAAGGCAGGAA------ -----GCTTTTA-TAGGATAAAGAATAAAGAACAAGGAAG-----------AGAAAAATAGAAAATATCTGATTGGCTGG GGCCACATAGTCAACCTTGTTTGGGGTGAGAAGGAACAAAAA---TAAATATAGAGCCCAGAGTTGGCTTGGCGTTTGGG GATTGGCTGACTGGATAT-----ACTGCGTTTCTGGTCAAGTGGAGCATTTACAGGGACACGAAAGTTA--TCTAAGTTT CGGTTTGCTGANGTGGCACCCCGGGCAGGAGTGGCTCCATCTTGGGCCTAGAAAGTTATTTCAACA-------------- ------------------------------------------------ >Canis_familiaris CATGTACC-AAGAAAGTCTAGAAG------------------------------GATCTGCCT-TCACCAAGTCACAG-- -------------ATTG---GGTT---TAT--TGAAATGACTAAAGAAGACAATTTAGGTGACACAAA-CAAACTTTA-- --ACTC-TTCATGAAGTCA-CAGTCTCCATTACCAAGAGTCCACAGAACTACAAAATAGGATGGAAGGCAAGGA------ -----ACTTTTATTGGGACAAAGAATAAAGAACAAGAGAG-----------GGAAAAATGAAAAACA------------- ---------------------------AACAAGGAACAAAGATA-TAGGTATACAGCCCAGAGCTGGCATGGTGTCTTGG GATTGGCTACTTAGATAC-----ACTTCATTTC-AGTCAAGCAGAGGATTTACAAGGACACAAGAGTTA--TCCAAGTTT CTGTTTCCCAATGTGGCATCCTGGGCAGGAGTGACTCCATCCTGGGCCTGGAAATGTATTACAATA---GGGTT---GAA GCCCAGGTCTGCTGACTACACATCCAGATCC-CTTAACCTTTATGCTA >Felis_catus CAAGTACC-AAGAAGGTCTGGAAG------------------------------GATCTGCCT-CCACCAAGTCACAG-- -------------GCTG---GGTT---TGTG-AAAAATGATTAAAGAAGACAACTTAGATGACACAAA-TGAACTTTATT TAACAC-TTCATGAAGTGG-CAGTCTCCATTCCCAAGGGTCCAGAGAATTTCAAAATGGAGT-GAAGGTGAGGG------ -----GCTTTTATTAGGAAAAAGTATAAAGGACAAGAAAG-----------GGGAAAATGAAAAATA------------- ---------------------------AACAAAGAACAAGGGTGTTAAGTATGCAGCCCAGAGTTGGCATGGTAT-TGGG GATTGACTGATTGGATGT-----GCTGCATTTG-AATCAAGTGAAACCTTTATAAGGATGCGAAAGTTA--TCTAAGTTT --GTTTCCTGATGTGGCGTCCTGGGAAGGAGTGACTCCATCGTGGGTCTGGAAATGTATTGCAATT---GGGTT---GAA GCCCAGGTCTGCTGACTGCAGATCCAGATCC-CTTAACCTGTGTGCTA >Manis_javanica CAGATACC-AAGTGAGTCCAGGGG------------------------------GAGTCACCT-CCTCTGAGGCACAG-- -------------GTCA---GGCT---TGTT-AGAAGTGATTAGAGAAGACAATTTAATTTATGCAAA-TAAACTTTATT TTACAC-CTCATGAAG-------GTTCCATTCCC-AGAGTCCACACAACTGCAAAATGGGATGGAAGGCAGGAA------ -----GCTTTCA-TAGGGCAAAGAATAAGTAAAAAGAAAG-----------GGGAGAATGGAAAATG------------- ---------------------------AGTAAGGAACAAGGAAA-TAAGTTTACAGCCCAGAGCTGACATGGCATTTGGG GATTGGCTGGTTGGATATATTGGACTGTGTTTCTGGACAAAGGGAGCATTTACA-GGACACGAAAATTAGATCTGAGTTT TGGTTTGCTGACATGGCAACCCGGGCAGGACC-ATTCCATGTTGGGACTATATATTTATTTCAACA---GA-AT---GAA GCCTGGGTCTGCTGACTGCTGATCCAGAACT-CTTAACCTGTATGCTA >Equus_caballus CAGGTACC-AAGTGAGTCGAGGAG------------------------------AATCTGCCT-CCACTCAGTCACAG-- -------------GCTG---GGTT---TCTT-AAAAATGATCAGAGAAGACAATGTAGGTGAT----A-CAAACTTTATT TAACGC-TTCATGAAGCAG-CAGTCTCTGTTCCCAACGGTCTGGAGAACTGCAAAATGGGGCAGAAGGAGGGAAGAACAG GACAGGACAGGA-CGAGATAAAGAATAAGGAGAAAGAAAG-----------GGAAGAAAGGAAAATG------------- ---------------------------AACAAGGAACAAGGAAA-TGGGCACAGAGCCTAGTGCTGGCCTGGGGTTTGCG GGTTGGCTGACTGGATAT-----TCTGCATTTCTGGTCAAGTGCAGCATTTACAGGGACACGAAATTGAG-GCTAAGTTT CCGTTTGCTGATGTGGCATCTTGGGCAGGAACGGCTCAGTCTTGGGCCTAGAAACATATTTCAACA---GG-TT---GG- GTCCAGGTCTGCCAACTGCAGACCCAGAACC-CTTGCCCTGCACGCTT >Ceratotherium_simum CAGGTACC-AAACGAGTCAAGGAG------------------------------AATCTGCCT-CCACCAAGTCACAG-- -------------GTCT---ATTT---TGTT-AAAAATGATCAAAGAAGACAATTTAGGTGAT----A-CAAACTTTA-T TAACACTTTCATGAAGTGG-CAGTCTCTGTTCCCAAGGGTCCAGAGAACTACAAAATGGGACAGAAGGCAGGAA------ -----GCTTTTA-TAGGGTAAAGAATAAGGAACAAGAAAG-----------GGAAAAAAGGAAAATG------------- ---------------------------AATAAGGAACAAGGAAA-TAAGTATAGAGCCCAGAGTTGGCCTGGCGTTTGGG GATTGGCTGACTGGAGAT-----AGTGCGTTTCTGATCAAGTGGAGCATTTACAGGGACACGAAAGTTA--TCTCAGTTT CTATTTGCTGACGTGGCATCTTGGGAAGGAGCGACTCCATCTTGGGCCTGGAAATGTATTTCAACA---GG-TT---GAA GCCCAGGTCTGCTGACTGCAGATCCAGAACA-CTTAACCTGCATGCTT >Condylura_cristata CAGGAACTAAAGTAAATCAAGGAG------------------------------AATTCACCT-CTATCAAGTTTCAG-- -------------GTCA---GGCC---TGT--TAAAATGATTAGTGAAGTCAATTTAAGTGATACAAATCACACTTTTGT TAGTAC-TTCATGAAGCAGGCAGTCTCCATTGCTAAGAGTCCAGAGAACTGCAAAATGGGGTGGAAGGCTGAAA------ -----GCTTTTA-TAGGATGAAAAATAAGGAACAAGGAAGAATAGAAAACAAACAAAAAAAAAAATG------------- ---------------------------AATAAGGATCAAGGAAG-TAAGTAGAAAGCCCAGAGTTGGTTTGACTTTTGGG GATTGGTTGATTACATGG-----AGTTTA-TTCTGATGAAGTAGAACATTTATTAAGA-ACAAAATTTA---TTAAGTTT CCATTTGCTGAGGTGACAGCCAGAGCAGGAGCAGCTTCCTTCTAGGCCTAGAAGGTTATTTCAACA---GG-TT---GAA GTCCAGGTCTGCTGACTATAAATCCAGAAGC-CATCATCTATATGTTA >Uropsilus_gracilis NNNNNNNNNAAGTGAATCAAGGAG------------------------------GATTCACCC-ACACCAAGTTACAG-- -------------GCTA---TGCT---GGTT-AAATATGATTAAAGAGGACAATTTAGGTGATAGAAA-CATACGTTAGT TTGCCC-TTCATGAAGCAGGCTATGTCAATTTTTAAGGTTCCAGAGAACTGCAAAATAGGATGGAAAACAGGAA------ -----ACCTTAA-TAGGTTAAAAAATAAAGAACAAGAAAGAA---------GAAGTAACAAAAATTG------------- ---------------------------AATAAGAAATAAAGA-------------ACCTAGAGCTGATTTGGCGTTTAGA GACTGACTGTGTAG---------ACTTCATTTCTG---AAGTGGGACATTGACAGGGGCACAAAATTTA--TCTGAGTTT CCATTTGCTTA-GTGGCAGGCAGGGCAGGAAC--CTTCCTTATGAACCTAGAAAGTTATTTCAACA---GG-CT---GAA GCTCAGGTCTTCTGACTGCAGATCTAGAATC-CATAACCTGCAAGCTC >Sus_scrofa CAGGTCCC-AAGTGAGTCAGG--G------------------------------GATCTGCCT-TCACCAAGTCAGAG-- -------------GCTG--------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------GG-TT---GAA TTCCAGGTCTACTGACCACAAATCCAGAACC-CATAACCTGTAAGCTA >Bos_taurus CAGGTACT-AAGTGACTCAAGAAG------------------------------GATCTGCCT-TCACGAAGTCACAG-- -------------GTTG--------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------GG-TT---GAA TCCCAGGTCTACTGACCACAGATCCAGCACC-CATAACCTGGATGGTA >Myotis_myotis CATGTACT-AAGTGAGTCTGGGAG------------------------------GATCCACCT-CCATGAAGTTACAA-- -------------GTTG--------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------GG-TT---GAA GCTTAGGTCTGCTGACTACAGATCCAAAACCCCATAACTTATCTCCTA >Rousettus_aegyptiacus CAGATGCT-AAATGAGTCTAGAAG------------------------------GGTGTGCCT-CTGACAGGTCACAA-- -------------GGTA--------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------GG-TT---GAA GACTAAGTCTTCTAACTATAGGTCCAGAAAC-CATAACCTGTCTGCTA >Homo_sapiens TAGGTACT-AAATGAGTCAGTGTAATCAATACAATATCCATGTTTGACTACACTGACTTGCCTCCCACCAAGTCACAGAT GGGAAGTAGGGGTATTG--------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------GG-TT---GAA GCCCAGGTCTTCTGACTACAGATCTAGAACC-TATAACCACTGTGCTA Horse37_LINE >L1MA9_3END -------------------------------------------------------------------------------- -----TTTTTCC---AGCTTT--ATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGT TTTGATATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTACCAT-T TTTTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAAAT---------------------------------- -------------------------------------------- >Sus_scrofa GAA-A-ATCAGCTACTTAGCAATCT-GGGATATACATGAATCTTGAGCACTAAATCC---AACCCATTG-AGTG---TGT GTTGAGGGGGGT---AGTTTT--ACTGAGGTATAATTGAC--AT-AACATTACA-----TCCAGGTATACAACATAATGA GTCAATATTTATATATACTGCAAAATGATCAATAAAAT----CCAGTTAAC--ATCTACTACCATACATAGTTAAAAAAT TTTT--CTTGAAATGAGAACTTTTAAGATAC------------------AACCCAT--TTTTA---AA----GAAAATAC AACCTTTATATCATGTTTAGATGT-TAGCCTAATAA--AAATTA >Bos_taurus GAAGA-ATCAAGTTCTTGGCCATCT-GGTATATACTTGGATCTTGAGCACCGAATGC---AACTCATTG-TGTG---TGT GTGTGTGTGTGTGTGTGTGTT--ACTGAGGTATAATTGAC--AT-AGCATTATG-----TTCAGGTATACCACATAAGGA CTT------TCTATATATTGCAAAATGATTCC---AGTAAGTCCAATTGAC--ATCTACCACTGTACATAATTAAATTTT TTTTTCCTTGTAATGAGAACTTTTAAGATGC------------------AACACAC--TTTTT---AA----GAAA-TAT AACCTTTATATCATGTTTAGTTGT-TAGCTTGACAG--AAATGA >Equus_caballus GAA-A-ATCAACTTCTTAGCAATCT-AGGATATACCTGGGTCTTGAGCACTGAATCC---AACCTATTGTTGTT------ ---------GTT---TTTTTTAAATGGAGGTATAATTGAC--AT-AACATTATATTAGTTTTAGATGTACAACATAATGA TTCAATATTTTTATATATTACAAAATGATCACCATAATAATTCTAGTTAAC--ATCTGTCACCATACATAGTTAAAAATT TTTTTTCTTATGATGGGAACTTTTAAGCTGC-------------------ACCCATT-TTTTT---AAA---GAAAATAT AACC--TATATCATGTTTAGATAT-TAGCCTAACAA--AAATTA >Ceratotherium_simum GAA-A-ATCAACTTCTTAGTAATCT-GGGACATAGCTGGGTCTTAAGCACTGAATCC---AACCTGTTGTTGTT------ ------GTTTTT---TTTTTT--AGTGAGGTAC-ATTGACATAT-AACATGATATTAATTTCAGACGTACAACATAAGTA TTCAATA----TATATATTGCAAAATGATCACCACAATAATTCTAGCTAAC--GCCTGTCACCATACATAGTTAAAAA-T TTTTTTCTTATGATGAGAACCTTTAAGATGC------------------AACCCATT-TTTTT---AA----GAAAATAT AACCTATATATCATGTTTAGATGT-TAGCCTAACAA--AAATTA >Canis_familiaris GAA---ATCT-----GGGGCAATCTGGGGGCATACCTGGATCTTGAGCACCGAATCC----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------AACTCACTGTTTTT---AGG---AAAAATGT AACCTCTCTATCACATTTAGATGT-TAGCCTCACAATCAAATGA >Felis_catus GGA-A-ATCAACCTCTTGGCAATCT-GGGACATACCTGGGTCTTGAGCACTGAATCC----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------AACTCACTGGTTTT---AA----GAAAATGT AATCTTTATATCATGTTTAAATGT-TAGCCTAACAA--AAATTA >Manis_javanica NNNNNNNNNNNNNNNNNNGCAATCT-GGGACATACCTAGTTCTTGAG-ACTGAATCC----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------AACACATTGTTTCT---CA----GAAAATAC GACCTTCGTATCATGG-AAGATAT-TAGTCTAACAA--AAATTA >Miniopterus_natalensis AAAAATACCGATCTCTTAGCAACCT-GGGGCATACCTGGGTTTTCAGTACGGAATCC----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------AGCTCACTGTTTTT---AA----GAAAATGC AAC-TGTGTGTCATGTTTAGATGT-GAGCCTAATAC--AGAGGA >Rousettus_aegyptiacus GAA-A-ATCATTCACTTGGCAATCT-GGGACATACCTAGGTTTTAAGCATTGTATTC----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------AG-TCATTGTTTTT---AA----GAAAATAT AACCTGCATGTCATGTTTAGATGT-TAGCCTAACAG--AACTAA >Condylura_cristata GAAAA-ACCAAACTCTGAGAAGTCT-AGGATAAACCTGACTCATGCGCACTGAATCC----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------AACCCCTTGTTTTT---AA----GAAAATAC AACCTTAAGATCATGATTAGATGT-TAGGTTAACAA--AAACTT >Sorex_araneus GAAAA-TCCGATCTCTTAGGAGTCT-GGGACATTCTCGGGTCTTAATTACAGAATCC----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------AGCAATTTTTTTTA---AAATTAGAAGATGT AATCTTTATGTCATATTTCCATGTTTAGCCTAACAG--ACTTTA >Homo_sapiens GAA-A-ATAAACCTCTTAGCAATGT-GGGACATACCTGTATCTTGAGCACTGAAACT----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------AACCCAGTGTTTTC---AA----GGAAATAT AGTCTTTATATAATGTTTAGGTAT-TAGCCTAACAA--AAATCA Horse38_LINE >L1MAB_EC ----------------------------------------------------------------------------TTTT TTTTTTTC--AGTT----------TTATTGAGATATA----ATTGACATATAACATTGTATTATGTTTAAGGTGTACAAC ATAATGATTTGATATATGTATATATTGTGAAATGATTACCACAATGAAGTTAATTAACACATCCATCACCTCACATAGTT ACAAATTTTTTTTTTGTTTKTGTGATGAGAACTTTTAAGATCTACTCTCTTAGCAACTTTCAAA-TATACAATACAGTAT TATTAACTATAGTCACCATGCTGTACATTACATCCCCAGAACTTATTCATCTTATAACTGAAAGTTTGTACCCTTTGACC AACCTCTCCCTATTTCCCCCACCCCCCA--------GCCTCTGGCAACCACCAATCTATTCTCTGTTTCTATGAGTTTGG TTT--TTTTTTTTTAGATTCCACA--TATAAGTGAGATCATGCAGTATTTGTCTTTCTCTGTCTGACTTATTTCACTTA- --GCA-TAATGCCCTCAAGGTTCCATCCATG---------------------------TTGTCACAAATGGCAGGATTTC CTTCTTTTCTTTTTTATGGCTGAATAATATTCCATTG------------TATATAT--------------ATACCACATT TTCTTTATCCATTCATCCATCAATGGACACTT---AGGTTGTTTCCA--------------------------------- -------------------------------------------- >Sus_scrofa CAGGGCCAACCACCCGATAAAGTCTCAGTCGTT-----TTTTCCCAGGGGCAAGG---GCT---GAAGCAGCC------A TTCCTCCT--CACTGCGATTTAT-TTATTT--TTTCA----AATGAGGTGTAACATCTATTC--ATTTCAGGTCTAGGAC ACAATGATTTAAAAGTCGTATGC-CGGCAAAATGAGCACCGCAGTAAGTCTACTCA--ACATCTGTCCCCACACACAGTT GGG----TTTTTTTTTCCCTCGCGCTAAGAAATTTGAAGACATCCTAACTGAGCAACTTTTAAAGTGGACAAC---GGGC TGTCCGGCGTGGTCGCCACGCTGCGAAGCTCA--CCCAGGACTGATTGGCTTGATCT------GTCTGGACCTT------ -----------------------CCCCG-----------TCTGGCCAGCAGGAGCTGGCTCTT----------------- -----------------CTCCGCA--CCGAGGGGCG-TCCTAAGGTA-GTGCCTTTCTCTACCCGACGGACCTCACCCA- --GCA-TCATGCCGTCGA-GGTCCCCCCGAG---------------------------GTGTCAC-AGTGGCAAGATTTC ATCC-----TCTTTTACGGCTGAACTATATGCCGCCA-----CCGTACACACACGT--------------GTGCCCCATT TTCTTTGTCCA--CGTCCACGGATGGACGCCG---AGGTT----------GCCACAGTGGTT---CTTCTGGGTT----A GCATTCTAGCTCCACGGCCGATTCAA-----AGGCAAGCGCTGC >Vicugna_pacos CAGTACCAAGCACCCAATTAATTCCCTATTATTTT---CCCTTCAAGGGGAAAGA---ATT---GAAGTGGCT------A TTTTTTTTTAAACTGTGAGTCA--TTAAAAAAATATGAGGTATAGACATTTAACATTT------GTTTCAGGTGGACAGC ---ATGATTTGGTAATTGTATGCACTGTGAAATGAT---GACAGTAAGTCAAATTA--ACACCTGTCAC--CACACAGCT ACAA---TTTTT----TTCTTGTGGTAAGAAGTTATAAGATTGATTCTCTTAGCACTTTTCAAG-CAGGCAACACGGTAT TACTAACTCTAGTTGCCATGCTGT-----------CTAGGACTGATTTATTTTATAATTGGAAGTTTGTAC--------- -----------ATTTTGCCCCCGCCCCA---------CCTCTGCCAACCACCCATCTGTTGTT----------------- -----------------CTCCATATTTTTAAGTGAGATCATATGGTGTTTGTCTTTT---------CTGAGTTCACTTAA AGGCAGCAATGCCCTCAA-GGTTCATCCATG---------------------------TTGTCACCAATGGCAATATTTC ATTC-----CTTTTTATGGCTGAATAGTATTCCACTTTGTGTGCATGAATACGTGTGTAAACCTGTGTGCGTATCACATG TTCTTTGTCTAGTCATCCACCGATGGACACTT---AGGTT----------GCTGGAGTGGCT---GTTTTT-ATTGTCAT TCGTTCTAGTTCAAGGACAGATTTGC-----AGACTCCTGCTGC >Equus_caballus CAGCAGCAAGCATCCAATTAATTCCCTATAA--------TTTTCAAGGGGAAAGG---GCT---GAAAGGGTT------A TTTTTTT---AATCGTGATTTTT-TAATTGAAGTATA----ATTGACATATAACATTATATTA-GTTTCAGGC-----AC TCAATGATTTGATATTTATATATATTGCAAAATGATCACGACAATAAGTCTAGTTA--ACATCCATCATGGTACATAGTT ACAAAAATTTTT----TCCTTGTGATGAGAACTTCTAAGATCTACTCTCTTAGCAACTTTCGAA-TATGCAGTACAGTAT TATTAACTATTGCTACCATGCTGTATATTGCATCCCCACGACTTACTTATTTTATACCTGGAAGTTTGTACATTTTGATC CTCTTCACCC-ATTTTGCCCACCCCCCGCCCCCCTCACCTCTGGCAACCACCAATCTGTTCTCTGTATGTATGAGCTTGG TTTTGTTTTGTTTTAGATTCCACA--TAAAAGGGAGATCATAAGGTATTTGTCTTTCTCTGTGTGACTTATTTCACTTA- --GCA-CAAAGCCCTCAG-GATCTATCCACA---------------------------TTGTCACAAAGGGCAAGATTTC CTT------CTTTTTATGGCTGAGTAGTACTCCATTG----TGTGTGTGCACCTAT--------------ATACCACGTT TTTTTAATC----CATCCATCGATGGACACTT---AGGTT----------GCTGAAGTGGTT---ATTTTT-ATT----T TCATCCCAGTTCAATGACAGATTGAACTAGCAGACT--AGTTGC >Ceratotherium_simum CAGCAGCAAGCATCCAATTAATTCCCTATAAT------TTTTTTAAGGGGAAAGG---GCT---GAAGTGGTT------A TTTTTTTT--AATTGTGATTTTTCTTATTGAGGTATA----ATCGACATATTA-----------GTTTCAGGTGTACAAC ATAATGATTCGATATTTGTATATATTGCAAAACGATCACCACAATAAGTCTAGTTA--ACATTTATCA--GCACACAGTT ACAAAATTTTTTC---TTCTTCTGTTGAGGACTTTTAAGATCTACTCTCTTAGCAACTTCCAAA-TATGCAATACGGTAT TATTAACTATAGTCTTCATGCTGTACATTATATCCCCAAGACTTATTTATTTTATAACTGGAAGTTTGTACATTTTCACC CCCTTCACCC-ATTTTGCCCACCCCCTA--CCCCCTGCCTCTGGCAACCACCAATCTGTTCTCTGTCTCTATGAGCTTGG TTTTGTTTTCTTTTAGATTCCACA--TATAAGTGAGATAATACAGTATTTGTTTTTCTCTGTCTGACTTATTTTACTTA- --GCA-AATTGTCCTCAA-GTTCTACCCATGTTAGAACTTGGTAGAACTTGCTGCCCTTTGTCACAAAAGGCAAGATTTT CT-------TTTTTTATGGCTGAGTAGTATTCCAGTATGTCTGTGTGTCTGTGTGT--------------GTACCACATT TTATTTATCCATTCATCCATTGATGGACACTTAGGAGGCT----------GCTGAAGTGGTT---TTTTTT-ATT----A TCATTCTAGTTCAGTGACAGAGTCAA-----AGACTAGAGTTGT >Canis_familiaris GAGCACCAAGTGTCCAATTAATTCCCTATAA-------TTTTTCAAATGGAAGGG---GTG---GAAGTGGTT------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------ATTTTT-ATT----A TCATTCTAGTTCAATGAAAGATTCAA-----AGACCAAAGGTGC >Felis_catus CAGCACGAAGCATCTAATTAATTCCCTATAAT------TTTTTCAAGTGGAAGGG---GTG---GAAATGGTT------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------ATTTTT-ATT----A TCATTCTAGTTCAATGAAAGATTCAA-----AGATCAAAGTTGC >Manis_javanica CAGCACCACACATCCAACTAACTCCCTATATATT----TTTTTCAAAGGGAAAGG---GCT---AAAGTGGTT------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------ATTTTC-ATT----A TCATTCTAGTTCAGTAACAGATTGAA-----AGACT-AAGTTAC >Myotis_myotis CAGCACCAAGCATCCAATTAACTCCCTGTAATTT----TTTTTCAAGGTGAAATG---GTT---AAAGTGCTT------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------ATTTTT-ATT----A TCATTCTAATTCAATGACAGATTCAA-----AGACTAAAGTTGC >Rousettus_aegyptiacus TGGCAATACACATCCAATTTA-TCTCTACAATT-----TTTTTCAAGGGGAAAGG---GCT---G-AGTGCTT------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------ACTTTT-ATT----A TCATTCTAGTTCAATGACATATTCAA-----AGACTAAAGTTGC >Condylura_cristata CAACACCAAGCATCCAGTTCATTCTCTATAATT-----TTTTCCAAGGGGAAAGA---GCT---CAAGCGGTC------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------ACTTTTTATT----A TCATTCTAGTTCAATGGCAGAG-CGA-----AGTCT-GAGGTGT >Uropsilus_gracilis GAGTACCAAGTATCCAGTTAGTTCCCTATAGTTTTTTATTTTTCAAATA-AAAGA---GCTTACGAGGTCATT------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------TTTT---ATT----A TCATTCTAGTTCAATGACAGATCCAA-----AGTCCACAGTTGT >Homo_sapiens GAGCACCAAGCATCCAATTAATTCCCTATAATT-----TTTTTCAAGAAGAAGGG---GCT---AAGGTAGTT------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------ATTTT--ATT----A TCATTCTAGTTCAGTGAGAGATTCAA-----AGACTAACGTTAC Horse40_LINE >L1MA9_3END ----------------------------------------------------------------------TTTT------ TCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATATACGTAT ACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTACCATTTTTTTGTGTGT---- --------------------------------------------------------------------- >Sus_scrofa GGGTATCATGTCACATGGCCTCCCAATTCCTGGACCCCAGCTAAAGCCAG---CCTGCTGATGTCTT---TTTT--TCCT TCCAGTGTGGTTGACATGTAATTGACATAC-ATCACTGTGTAAGTTTAGGGTGTACAGCTTGATGATGAAACTGAC--AT AGATTGTGAAGTGATGACTGCAACAAATTTAGTTAAT--ATCCCTCATCTCATCTGGA---------------------T GAGCTGAAGTCTT---AGCCCGAGCTCCTGGTTTCCTACATCCCTAGGAGGTGACACATTTCTTCTTGC >Tursiops_truncatus GGGCATCACGTCATGTGGTCTCTTGATTCTTGGACCCCAGCTGACGGCAG---TCTGCTGACATTTT---TTTT---TCT TCCTGTTTTATTGAGATATAATTGACATCC-ATCACTGTATTAGTTTAAGGTGTGCAGCGTGATGGTTTGACTTAC--AT ATATTGTGAAATGATTACTGCAATAAATTTAGTTAAC--ATCCATCATGTCATATAGA---------------------C GTGCTGAAGTCTT---AACCTGAGCCCCTGGTGAGCTAAGCCCCTAGGAGGTGACAAATTTCTTGTTGC >Equus_caballus GGGTATAATGTCACGTGGTCTCCAGATTC--------CAGCTAAAGCCAG---CCTGCCGAAGTCTT---TTTT-----C TCCAGTTTTATTGAGATCTAATTGACATAC-ATCACTGTATACGTTTAAGGTGTACAGCATCATGATTTGATTTCC--AT GCGTTGTGAAATGATTACCAGAATAAGTATAGTTAGC--ATCCATCATCCCACGTAGA---------------------C CTGCTGAAGTCTT---C-CCTGAACCCCTGGTCTGCCAAGCCCCTCTGGGAAGGCACATTTCTTCTTGC >Ceratotherium_simum GGGTATAATATCATGTGGTCTTTGGATTCCTGGACCCCAGCTGACGCCAG---CCTGCTGAAGTCTT---TTTTTTTCCC TCCAGTTTTATTGAGATCTCATTGACAGAC-ATCACTGTGTAAGTTTGATGTGTACAGCATCATGATTTGACTTAC--AT GTATTGTGAAATGATTACC---ATAAGTTTAGTTAGC--ATCCATCATCCCGTATAGA---------------------C CTGCTGAAGTCTC---A-TCTGAGCCCCTGGTCTGCCAAGACTCTACAGGATGACACATTTCTTCTTGC >Canis_familiaris GGGTCTAAAGTCACATGGCCT-TGGTTTCCTGGACCCCAGCTGATGCCAG------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------T CTGCTGAAGTCTT---AACCTGAGCCGATGG----------------GGGGTGACACATTTCTTCTTGC >Felis_catus GGGTATGATGTCATGTGGCCT-CGGTTTCCTGGACCCCAGCTGACGCCAG------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------C CCACTGAAGTCTT---AACCTGAGCCTGTGG----------------GGGAAGACACATTTCTTCTTGG >Manis_pentadactyla GGGTTTT---TCAC-TGGTCTTCAGATTCCTGGACCCCTGCTGAAGCCAG------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------G CTGCTGACGGCTT---AACCTGAGCCCCTG-------------------GGGGATATCTTTCTTTGGGC >Myotis_myotis GGGCAGCATGTCACGTGGTCTTCA-ATTCCCGGACCCCAGCTGAAG--AG------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------C CAGCTGAAGTCTG---CGCTTGAGACCCAGCCTT----AGGCCCCAGGGGATGACACATTGTTTCCTGC >Rousettus_aegyptiacus GGGTAAAATGTCACATGGTCTCTGGATTCCTGGACCCCAGCTAAAGCCGG------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------T CTGCTGAAGTCTT---A-TCT-AGCCTGAGTC-TGCTAAGCCCCTAGGAAATGACA--TTT-TTCCTGC >Condylura_cristata GGGTGTGATTTCATGGGGTTTCCAGAGTCCTTGACCTCACCCGAAGCCAG------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------C-CCC-AACCTCTGGGCTTCAAAGCTCCCAGAGGATGACCCAT---GTCTTGC >Scalopus_aquaticus GGATATGGCGTCGTGGGGTTTCCAGAGTCCTCGACCTCAGCTGAAGCCAG------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------C CTGCCGAGG-CCC---A-CCCGAACCCCTGGTTTGTGAAGCCCCCAGAGGAGGACACAT---TTCTTGC >Homo_sapiens GGGTATGATGTCACTTAGTCTCCTGATTCCCAGG-CTCA--TGAAGCCAG------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------A CTGCTGAGGACTT---AACT---GCCCCAGATTTGTCAAGCCCCTAGGGGATGACACATTTTTTCTTAC Horse47_LINE >L1MA9_3END -------------------------------------------------------------------TCAAAACATCACG TTGTACACCTTAAATATATACAATTTTTATTTGTCAATTA-TACCTCAATAAAGCTGGAAAAA----------------- ------------------------------------------------------------ >Sus_scrofa GTCTTCTCAACTCTAGGTATTTCAGCATGAAA--CCTAAGTTTGCTTCTC---GGGAATCTGAT---------------G CTGTACACCTTAAGCTTACAC-AGGGATGTGTGTCAATGA-TGTCTCAGTAAAACTGG-----GGG---GGACATTTGGC ---ATCGCCATGTCCAGCTGAGCAACCA----CTGGAAACTGACAAGCCCCGAGT-GGCA >Bos_taurus GTCTTTTCAACTCTA----TTTCAGCATGAAAAGCAAGGGTTTGTTTATC---CAGAATTTGAT---------------G CTGTATACCTTAAACTTATAC-AGTGATGTATGTCAATTA-TTTCTCAATAAAACTGG-----GAA---AAGATTTTGGT ---ATCACTGTGTCCAGCTGAGCAACTG----CTGGAAATGGATGAAACCTGAGC-AGAA >Equus_caballus ATCATTTCAACTCTA----TTTCAGCATGAAAAGCAAGAGTTTGTCTATC---AAGAATTTGAT---------------G CTGTACACCTTAAACTTATGC-AGTGATATATGTCAATTA-TTTCTCAATAAAACTGGG-GAAAAA---ATGAATTTGGT ---ACTACCATGCTCAGCTGAGCAACCA----CTGGAAACTGACATGACCTGAGC-AGAA >Tapirus_indicus ATCATTTCAACTCTAAGTATTTCAGCATGAAAAGCAAGAGTTTGTTTATG---AAGAATTTGAT---------------G CTGTACACCTTAAACTTATAC-GGTGATGTATGTCAATTATTTTCTCAATAAAACTGGAAAAAAAA---AAGAATTTGGT ---ATCACCATGCCCAGCTGAGCAACCA----CTGGAAACTGACATGACCCAAGC-AGAA >Canis_familiaris GGCTTCTCAACTGTGAGTATTTCAGCCTGGAAAGCAAGAGTTTGTTTATC---AAGAATTTGGT---------------- -------------------------------------------------------------------------------- ---CCCATCAGGCCCAGCTGAGCAAGCA------GGG--------------GAGC-AGAA >Felis_catus NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGCAAGAGTTTGCTGATC---AAGAACTTGGG---------------- -------------------------------------------------------------------------------- ---ATCACCACGCCCAGCCGGGCAAGCA----CGGGAGA-----------------AGAA >Phataginus_tricuspis NNNNNNTCAACTATAACCCTTTCAGCATGAAAAAC-AGGGTTTGTTTTTC---ACCAATTTGGT---------------- -------------------------------------------------------------------------------- ---ATCACCATGCCCAGCTGAGCAACCG----CCGGAAACTGAAGTGACCTGAGTACGAG >Myotis_myotis ATCATTTCAACTATAATTATTTCACCATGAAAAACAAGGGTTTGTTTATC---AAGAATTTGGT---------------- -------------------------------------------------------------------------------- ---ATCACCATACTCAGCTGAGTAACCAACCACTGGAAACTGACATAACCTGAGC-AGAA >Rousettus_aegyptiacus ATCATTTCAACTATAAGTATTTCAGAATGAAAAGCAAGAGTTTGTTTATC---AGAAATTTGGT---------------- -------------------------------------------------------------------------------- ---ATCA---TGCCCAGCTGAGCAACCA----CTGGAAAATGACATGACCTGAGT-AGAA >Condylura_cristata ATCATTTCAGCTCAATGTATTTCAGCA-GAAATGCAAGGGCTTGTTTATC---AAGAGTTCGGT---------------- -------------------------------------------------------------------------------- ---CTCACCATGCCCAACTGCACCACCA----GTGGAAAGTGGCATGACCTGCGT-AGAA >Sorex_araneus ACAATTTCAATTGTAAAGATTTCAACATGAAAAGCAAGAGTTTGTTTATC---AAGAATGTGGC---------------- -------------------------------------------------------------------------------- ---ATTATCATACCCAACTGAGCAACAA----CTGGAAACTGACATGACTTAAAC-AGAA >Homo_sapiens NNNNNNNNNNNNNNNNNNNNNNNNNNNNGAAAGGAAAGAGCTTGTTTATC---AAGAATTTGGT---------------- -------------------------------------------------------------------------------- ---ATCACCAAGCCCAGCGGAGCAACCA----CTGGAAACTGATATGATCGGAGC-AGAA Horse53_LINE >L1MAB_EC -------------------------------------------------------------------------------- -----------TTTTTTTTTTTCAGTTTTATTGAG-----ATATAATTGACATATAACATTGTATTATGTTTAAGGTGTA CAACATAATGATTTGATATATGTATATATTGTGAAA-------------------------------------------- ---------------------------- >Equus_caballus GATATTTAAGGTGATTTTGTGTGTTTAT-CAGGTT--GATGTCTAAA-TAAGG-GGATAATTGATGCTATC---TCAGCT TCTAAATT---------AAAAAACAATTTATTGAG-----GTACAATTGAC-------ATTATGTTA-GTTTCAGGTGTA CAACACGATGATTCTAT----------------------TCAACTTTTAAATT---TTTATCATAACATGCTATGAATCA CTTTTAA-AGTTGAATATGGCAAGAGAA >Ceratotherium_simum GATATTTAA-------TTGTCTGTTTAT-AAGGTTTGTATTTCTGAA-TAAGATGAATAATTGATGCTATC---TCAACT TCTAAATT---------AAAAAAAATTGTATTGAG-----GTATAATTGACAAATAACATTATATTA-GTTTCAGGTTCA CAACATAATGACTCGAT----------------------TCAACTTTTAAATT---TT--TTGTAACACACTATGAACTA CTTCTAA-AGTTAAATAAAGCAAGAAAA >Myotis_myotis ATTATTTAAAGTAATTGTATTTGTTTAT-AAGCTTTAAATATCTAAA-TAATACAAATAAT----GCTATC---TCAACT TCTAGATG----------CAAATTTTTTAATTGAG-----GTGTAATTGACAAGTAACATTATATTA-GTTTCATGTGCA CGACATAATGATTTGGT----------------------TCATCTTCTACATT---TTTAGCCCCAAACACTGGGACTCC CTTTTAA-AGTTGAATAGGGCAATAAAA >Rousettus_aegyptiacus GGTATCTAAAGTAATTGTGTCTGGTT-T-AAGGTCTGCATCTCTAAC-TAAGACAAACAATTGATGCCATC---TCAACT TTTAAATG---------TAAATTATTTTTAATGAAGGTATGTATAATCGACAAATAATATTATGTTA-GCTTCAGACGCA TACCATAATGATTTGGC----------------------TCAAATTCTGAATT---TTTATCTCAACGTGATAGGAACCC GTTTCAA-AGTTAAATAGGACAAGGGAA >Canis_familiaris TATATAAAAGGAAATTATGTCTGTTTATAAAGGTTTGTATCTC-----TAAGATGAGCGA-----GCTATC---TCATCT TCTAAAAT------------------------------------------------------------------------ --------------------------------------------------------TTTATCATAACCCTCTAGGAACCA CATTTGA-AGTTGAATAGGGCAAGAAAA >Felis_catus TATATTTAAGATAACTGTGTCTGTTTAT-AGGGTTTGTATCTCTGAGACAAAATAAGTGA-----GCTATC---TTGTCT TCTAACAT------------------------------------------------------------------------ --------------------------------------------------------TTTATCATAACCCACTATGAGCCA CATTTAA---------AGGGTAAGAAAA >Manis_pentadactyla GATATTTAAGGTAATTGTGTCT-------AAGGTTTGTATCTTT----TAAAA--GATAATTGATGCTCTC---TCAACT TCTAAAAT------------------------------------------------------------------------ --------------------------------------------------------TTTATCCTGACACATTATGTACCA CTTTTAA-AGTTGAATATGGTAAGAAAA >Sus_scrofa AATATTTAAAGTAGTTTTGT--GTTTAC-AAGTTTTAAGTCTCTAAATTAAAAGGACTAATTGACTCTAGG---TCAACT TATAAATT------------------------------------------------------------------------ --------------------------------------------------------GTTAATATAGCACTCTATGAACCA CTTTTAAGAGTTGAGTAGGGCAAGACAG >Bos_taurus GACGCTTAAAGTGATTGTGTCTGTTGAT-AAGATTTGAGTCTCAGAA-TAAGAGGAATAATTGATGCTACT---TCCACT TCTAAATT------------------------------------------------------------------------ --------------------------------------------------------GTTAGCATAACATACCCTGAACCA TTTTTAA-GGTTGAATAGGGCAAGAAAA >Condylura_cristata GGTG-CTGAGGTCAC--TGCTGGCTGAT-AAGGCCTGG-----TAAA-GAAGACGGGTCACCGAGACTGGC---TCAACT TGCACGTT------------------------------------------------------------------------ --------------------------------------------------------TTTATCTTTGTGCACCATGCCCCA CTTCTGA-AATGGAACGGGGCAAGAAGA >Sorex_araneus AACATTTAAGGCAATTGTTTCT-------AAGGTTTATATATCTCCTAAATAGCAAATAACTAAGGTGATA---GAAACT TTTAGCTT------------------------------------------------------------------------ --------------------------------------------------------TTTATTAGAGTTCATTGTGAAGCA --------AGC---------CAATGGGA >Homo_sapiens GATACTTAAAGGAATTGTATCTGTTTAT-AAGGTTTATATCTCTACA-TAAGATAAACAACTGATGCTGTT---TCAACT TCTGAATT------------------------------------------------------------------------ --------------------------------------------------------TTTATTATAACACACTTAAACTTA TTTTTAA-ACTTGAATAATGCAAGAAAA Horse54_LINE >L1MAB_EC -------------------------------------------------------------------------------- TTGTAACTATGTGAGGTGATGGATGTGTTAATTAACT----TCATTGTGGTAATCATTTCACAATATATACATATATCAA ATCATTATGTTGTACACCTTAAACATAATACAATGTTATATGTCAATTATATCTCAATAAAACTGAAAAAAAAAAA---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------- >Equus_caballus CTCCCTTTCTGAAGGTCAGCTGACATGGAAACTTAACTACATTTGC-AAAATCCCTTC---AAAATAATAACTGTGC--- ------------ATGCTGATAGATA------TTAACTAGACTTATTATGGTGATCATTTTGCAACATACACAAATATTGA ATCATTATGTTGTACACCTGAAAC-TAATGTACTATTATATGTCAATTATATCTCAGTTAAA-----------------A AAATATTAACTTTGT---TAG----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------CATTTGATAGAATAACAGGGAGAA-AGGGTATGT------------ ----------------------ACACCA-CAGGCTGG >Ceratotherium_simum CTCCCTCTCTGAAGGTCAGCTGATGTGAAA-CTTAACTACATCTGC-AAAATCCCTTC---AAAATAATAACTATGT--- ------------ATGGTAATGGATG------TTAACTAGATTTATTGTGGTGATCATTTTGCAACATACACAAATATTGA ATCATTATGTTGTATGCCTGAAAC-TAATGTAATGCTATATGTCAATTATATCTCAATCAAA-----------------A AAATAATACTTATAT---TAG----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------TATTTGAT----TAACTGGGAGAA-GGGGTATGT------------ ----------------------ATACCA-TGGGCTGG >Condylura_cristata CTTGCT--------ATCAAGCACTAT------TTAATTTCATCTGC-AAAATTTCTTC---AAAATAATGATCTTGT--- ------------GTGAAGATGGATG------TTAACTCGATGTATTA---TAACCAGTTCACAATAAATACAAATATTAA ATCATTAAATTGTACACATAAAAC----------------------ACATAGCTCCACTGAA-----------------A AA-TA-GAGCTATGT---TAA----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------TGTTTGATTGAATAACTGGGAGAA-GGGGAGTAA------------ ----------------------ATATCA-T-GCTTGG >Solenodon_paradoxus CTCCCT-----AAGGTGAACTGATGTAGAGCCTTACTTACATCTGC-AGAATCCCTTC---AAGATATTAACTATGT--- ------------GTGACAATGGATG------TTAACTAGACTTATTGTAGTGACCATTTCTCAGTAAGTACAAATATCAA ATCATTATG-TGTACCCCTGAAAC---AAACAGTGTTATATGTCAATTATATCTCAACTAAA-----------------A ATAT-----TTATAT---TAC----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------CAT----TTGAAGAACTGGGAAAA-TGAGTGGGT------------ ----------------------ACACCAGG-GGCTGG >Canis_familiaris CTCCTTATCTTAGAGTCAATTGATGTGGAACCTTAGTTATTTCTGC-AAAATCCTTTC---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------A -TGTAATGCCTATGT---TAG----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------TGTTAGGTTGAATACTCGGGAGAA-GGGGTGTAC------------ ----------------------ATACCAAT-GGCTGA >Felis_catus TTCCCTATCGTAGGGTTAATTGGTGTGGAACCTTAATTACAACTGT-GAAATCCCTTC---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------A GAATAATACCGATGT---TCG----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------TGTTAGATTGAATAACTGGGAGAA-AGGGCGTAC------------ ----------------------ACACCAAT-GGCTGA >Manis_pentadactyla CTCACTATCTTAAGATCAGTTGATGTGGAAACTTAATTACATTTGC-AAAATCCCTTC---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------C AAATAATACCTATAT---TAG----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------TGGGAGAA-GGAATATGC------------ ----------------------ATACCA-TGGGATGG >Sus_scrofa ATCCCCATCTTAAGATCAGCTGGTGTGGAACCTTAATTATATCTGC-AAAATCCCTTC---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------A AAATAGTACCTACTG---TAG----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------TATTGGATTGAAAACCTGAGAGAA-AGGGTGTGT------------ ----------------------ACCCCA-TGGGCTGG >Bos_taurus CTCTCTGTTTTAAGGTCCACTGATATGGAACCTTAATTACATCTGC-AAAATCCCTTC---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------A AAATATCATCTA-AT---TAG----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------TGTTGCATTGGATAACTAGGAGAA-GGGGTGTGT------------ ----------------------CTCCCA-TAGCCTGG >Myotis_myotis CTCCCTTTCTTAAGGTCAATTGATGTGGAACTTCAATTAGATTTGC-AAAACCCCTTC---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------A AAATAATAACTATAT---TAG----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------TGCTTGATTGAATGACTGGGAGAA-GGGGCGCAT------------ ----------------------ACACCA-TGGGCTGG >Rousettus_aegyptiacus CT--CTATTTTAAGGTCAACTGATGTGTAACCTATATTACATCTGCAAAAATCTCTTC---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------A A---AATACCTATAT---TAG----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------TGT----TTGAATAACTGGGAGAAGGGGGTGTGT------------ ----------------------ACACCA-TAGGCTGG >Homo_sapiens CCCCCTCTCTTTAGGTCATGTGATATGGAACCTTAATTATATCTAC-AAAATCCCTTT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------A ACATAATATCTATAT---TAGGCCAGGTGTGGTGGCTCACACCTGTAATTCTAGCACTTTGGGAGGCCGAGGTGGGCAGA TCACCTGAGGTCAGGGGTTTGAGACCAGCCTGGCCAACATGGCAAAACCCCATCTCTACTAAAAATACAAAACTTAGCAG GATGTGGTGGTGAATGCCTGCAATCCCAGCTACTTGAGAGGGTGAGGCAGGAGAATCGCTTGAACCCGAGAGGTGGAGGT TGCAGTGAGCCGAGATTGTGCCACTGCACTCTGGCCTGGGCAATAGAGTGAGAACCATGAGGCTCCATCTCAAAAATAAA TAAATATATAAATAAATAATACTACCTGTATGAGTGTCTGATAGAATACCTGAGAGAA-AGTGTGTGTGTGTGTGTGTGT GTGTGTGTGTGTGTGTGTGTGCATACCT-GGGGCTGG Horse55_LINE >L1MAB_EC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------TTTTTTTTTTTCAGTTTTATTGAGATATAATTGACATATAACATTGTATTATGTTTAAGGTG TACAACATAATGATTTGAT------------------------------------------------------------- ------------------- >Equus_caballus GCT-ATACTA---------------------------------------------------------------------- -----AAAGAAAT-TATTTGT----------------------------------------------------------- ------------------------------------------------TGTTTACCTGAAATTAAAA-TTTAATGAGATG ---TCTTATATTTTC----TTTT--------CTTTTATTAAGGTATAACTGACATATAACATTGTATTC-GCTTTA-GTG TACAACATA-------------TCC--TATATTTTC---AATTTGGGTATGGGTCTCT-------ATAAATACCTCT--G TTCTGATAAGAC-ATATCA >Tapirus_indicus GCTTATACTA---------------------------------------------------------------------- -----AAAGAAAT-TATTCAT----------------------------------------------------------- ------------------------------------------------TGTTTACCTGAAATTAAAA-TTTAATGCGATG ---TCCTATATTTTA----TTTT---------TTTTGTTAAGATATAACTGACATACAACATTGTAACA--TTTTAGGTG TACAACATA-------------TCC--TATATTTTC---AATTTGGGTAAGGGTCTCT-------ATAAATACCTCT--G TTCTGATAAGACTTTATCA >Myotis_myotis GCTAATACTA---------------------------------------------------------------------- -----AAAAAAATAAATAAAT----------------------------------------------------------- ------------------------------------------------TGTTTGCCTGT------------------ATA ---TCCTATATTTTC----TTCT-------TTTATGTCTAAGATATAAATGACATATAACA---TGTTA-GTTTTAGGGA TACACCATA-------------TCTGATATTTTTTC---AAATTGTGTGAGGGTTATTTATAGAGATAGATACCTCT--G TTCTGATAAGAT-ATATCA >Rousettus_aegyptiacus GTTTACAC------------------------------------------------------------------------ -----TAAAAAAA-TATTCAT----------------------------------------------------------- ------------------------------------------------TGTTTACCTGAAATTCAAATTTTAATCGGTTG ---TCCTATATTTTC----TTTTACACGTCCTTTTTTCTGAGCTATAATTGAAATATAACATTATATTA-GTTTTAGGTG TACACCATA-------------TCT--GATCTTTTC---AATTTGGGTGATGGTCACTTATAGTG-TG-ATA---CT--G TTCAGATAAG---ACATTA >Canis_familiaris AACTATTT------------------------------------------------------------------------ -----AAAAAAAT-TATTCAC----------------------------------------------------------- ------------------------------------------------CGTTTACCTGAAATTCGAA-TTTAATGGGATG ---TCTTATA-TTTC----------------------------------------------------------------- ---------------------------------------TATTTGGGTGAGGGTCTCT-------ATAAATATCTCT--C TTCTGATAAGAT-CTATCA >Felis_catus GCTTATCCTA-----------------------------------------------------------AAAA---AAAC AAAACAAAAAAAC-TATTCAT----------------------------------------------------------- ------------------------------------------------TGTTTACCTGAAATTCAAA-TTTAATGGGAGG ---TCTTATA-TTTC----------------------------------------------------------------- ---------------------------------------TATTTGGGGCAGGGTCTCT-------ATAAATATCCCT--G TTCTGATAAGAT-ATATCA >Manis_pentadactyla GCTTATAC------------------------------------------------------------------------ -----TAAAAAATACATTCAT----------------------------------------------------------- ------------------------------------------------TGTTTATCTGAAATTCACA-CTCCATGGGATG ---TCCTATATTTTC----------------------------------------------------------------- ---------------------------------------TATTTGGATGAGGGTCTCT-------ATAAACACCCCCTGG TTCTAACAGACT-CTATCA >Sus_scrofa GTGTATAC------------------------------------------------------------------------ -----TAGAAAGT-TATTCAC----------------------------------------------------------- ------------------------------------------------TGTTTACCTGAAATTTAGA-TTTAATGGGATG ---TCCTACATTTGC----------------------------------------------------------------- ---------------------------------------TATTTGGGTGAGTGTCTCT-------ATAAATACTCCT--G TTCTGATAAGAA-AAATCA >Bos_taurus GTTTATAC------------------------------------------------------------------------ -----TAGAAAAT-TATTCAC----------------------------------------------------------- ------------------------------------------------TGTTTACCTGAAATTCAAA-TTTAATGGGATG ---TCCTATATTTTC----------------------------------------------------------------- ---------------------------------------TATTTGGGTGAGTGTCTCT-------ATAAATACCCCT--G TTCTGATAAGAC-ATATCT >Condylura_cristata CCTCATACAGCCCCTGCACCTCTGGCCTGTACCCCAGTTCTGTATGCATAAATAAATAAATCTTTAAAAAAATAAAATAA AGAAGAAAGAAAA-AATTCAT----------------------------------------------------------- ------------------------------------------------TGTTTATCTGAAATTCTAA-CTTAATAGCATG ---TCCTATATTTTT----------------------------------------------------------------- ---------------------------------------CATTTGGATGA--GTCTTT-------ATAACTAGCACT--G CTTTGATCAGAC-ATCTCA >Erinaceus_europaeus GCTTATACTG---------------------------------------------------------------------- --------AAAGA-AATGTATGTACACGCGCTTGCAGGCACACACACACACACACACACAAAGAGATAGAGAGAGACACA CACACACACACTTGAAGTTCTCTAATGCCTGATACTTTTTTTTTTAACTGTTTACCTGAAATTCAAA-TTCAGTGGCATG ---GCATAGATTTCC----------------------------------------------------------------- ---------------------------------------TATTTGGATGAGGGATTCTAAAAAA-ATATATATATAT--G ATTTAATACAACATTGTCA >Homo_sapiens ATTTATATTT---------------------------------------------------------------------- --------AAAAT-CATTTAT----------------------------------------------------------- ------------------------------------------------TGTTTA-TTGATATTCAGA-TTCAATCAAAAA ---TTCTATATTTTC----------------------------------------------------------------- ---------------------------------------TATTTGGGTGAAGGTCTCT-------ATAAATACCCCT--G GTCTGATAAGAC-ATATCA Horse57_LINE >L1MAB_EC -------------------------------------------------------------------------------- AAAGTTGCTAAGAGAGTAGATCTTAAAAGTTCTCATC-------------------ACAMAAACAAAAAAA--------- --------------AAATTTGTAACTATGTGAGGTGATGGATGTGTTAATTAACTTCATTGT---GGTAATCATTTCACA ATATATACATATATCAAATCATTATGTTGTACACCTTAAACATAATACAATGTTATATGTCAATTATATCTCAATAAAAC TGAAAAAAAAAAA------------------------------------------------------------------- ---------------------------------------------------------------------- >Equus_caballus ATAATTTCACA-TTTTTCA----AAGGCTGCTGTT-GATGCCATTAATTTCCACGGGT---AAAGATCATCTCATAA--- -----------GAGAGTAGAGCTTATAAATTCTCATC-------------------ACAAGA--AAAGAAA--------- --------------AAATTTGTCACTATGTGTGGTGATGGA--AGTTAATTAGACTTATTGTGGAGGTGATCATTTCACG ATGTATACAAATATTGAATCATCATGTTGTACACCTGAAAC-TAATATAATATTGTATGTCAATTATGTCTCAATTGAAA AACA------------AAAGATCATCTGGGAA---ATGTTTACAG----------------------------------- -------------------TTTTTTT----------CTAGACAAGGAGAGAC-AAAGGTAACTCAGGTAA >Ceratotherium_simum ATAATTTCACA-ATTTTAA----AAGGCTGCTGTT-GCTGCCATTAATTTCCATAGGT---TAAGATCATCTGGTAA--- -----------GACAGTAGAGCTTATAAGTTCTCACC-------------------CCA-----AGAAAAA--------- --------------AAATTTGTCACTGTGT--GGTGATGGA--AGTTAATTAGACTTATTGT---GGTGATCATTTTGCA ATGTATACAAACATTGAATTAT-------------------------TAATGTTTTATGTCAATTGTGTCTCACTTAAAA ----------------AAATACCATCTGGGAA---ATGTTTAAAC----------------------------------- -------------------TTTTTTC----------TGAGACAAAGAGAAAC-AAAGGTAACTCAGGTAA >Myotis_myotis AAAATTTACCA-TTTTAAA----AAGGCTGCTGTG-GCTGCCATTCATTTACATAGAT---AAAGAGCATCTGGGAA--- -----------GAGAGTAAATCTTAAAAGTCCTCATCTTCTCTCTCTCTCTCTTTTACAGACACACACACACACACACAC ACACACACACACACACAGTTGTAACTATGGGAGATGATGGA--TGTTAACTGGACTCACTGT---GGGGATCATTTTGCA ATATATACAAATATCACATTGTTACACTGTACACCTGAAAC-TAATATAATGTTATATGTCAACTATATCTCAATTAAAA AAAAAAA---------AAAGATCACCTGGGAA---ATGTTCAAAC----------------------------------- -------------------TTTGTTC----------TGAGATAAG-AGGAAC-AAAGGTAACGCAGGTAA >Rousettus_aegyptiacus AAAATTTAACA-TTTTTAA----AAGGCTGCTGTT-GCTGCCATTAATTTCCATAAGC---AAAAATCATCTGGAAA--- -----------GAGAGTACATCTTAAACATTCTCAGT-------------------GCAAA---GAAATTA--------- --------------AAATTTGTAACTGTGTGTGGTGATGGA--TGTTAACTAGACTTATTAT------GATCATTTTGCA ATATATACAAATATCGAATCATTATATTGTACACCTGAAAC-TAATATAATGTTATATATCAAATATATCTCAAGAAA-- ----------------AAAGACCATCTGAGAA---ATGTTTAAAC----------------------------------- -------------------TTTTTTC----------TGAGACAAAGAGAAGC-AAACATAACTCAGGTAA >Canis_familiaris AAA---CAACA-TTTTTAA----AAGGCTGCTGTT-ACTGCCATTAATTTCCACAGGT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------AGAGGTCACCTGAAAT---ATGTTTAAACATTTGTTGTTGTTGTTGTTGTTGTTATTTTGCTTT TGTTGTTTTTTTTAATTTTTTTTTTTTGGGGGGGGGTGAGACAAAGAGATAC-AAAGGAAACTCAGGTAA >Felis_catus ATAATTTAACA-TTTTTAA----AAGGCTGCTGTT-GCTGCCATTAATTTCTATAGGT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------AAAGAGCGCCTGGGAA---ATGTTTAAAT--------------------GTGGTTTTTTGTTTG AGTGGGGTGTTTTTAGTTTTGTTTTC----------TGAGACAAAGGGAAAC-AAAGGTAACTCAGGTGA >Manis_pentadactyla ATAATTTAAC-------------AAGGCTACTGCTGGCTGCCATTAAATTCCACAGGC---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------AAAGAGCACCTGGGAA---ATGTTTAAAG----------------------------------- --------------------CTTCTT----------TTAGACG---AGAAAT-AAAGGTAACTCGGGTAA >Sus_scrofa ATCATTTAACA-TTTTTAA----AAGGCTGCTGTT-GCTGCCATGAGTTTCCGTAGGT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------ACAGACCATCTGGGAA---GTGTTTAAAC----------------------------------- --------------------TTTTTC----------TGAGACAAAGAGAAAC-AAAAATAACTCAGGTGA >Tursiops_truncatus ATAATTTAACATTTTTTTA----AAGGCTGCTGTC-GTTGCCATTAATTTTCATAGGT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------AAAGATCACCTGGGAA---ATGTTTAAAC----------------------------------- -----------------TTTTTTTTT----------TGAGACAAAGAGAAAC-AAAAATAACTCAGGTGA >Condylura_cristata ACAGTTTAACT-TCCTTTATTTCCAGGTTGTTCTT-ACTGCTATTAATTTCCAAAGGT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------TAAGATACTCTAGAAA---ATGTTTAAAC----------------------------------- ---------------TTTTTTTTTTT----------TCAG------AGAAGC-TAAGATAACTCAGGTAA >Sorex_araneus ATGATTTAACATTTTTTTA----AAAGACACTGTT-GCTGCCATTCATTTCTGTAGGT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------AGCAGTCACTTGGGAA---ATGCTTAAAC----------------------------------- ----------------GTTTTTTTCC----------TTTGAAACGGAGAAGA-AAATATAA-TTTAGTAA >Homo_sapiens ATGATTTAACA-TTTTTTA----AAGGCTGCAATT-GCTGCCGTTAATTTCCATAGGT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------AAAGATCATCTGGGAA---ATATTTAAAC----------------------------------- -------------------GTTTTTT----------TGAAACAAAGAGCAACAAAAGGTAACTCAAGTTT Horse59_LINE >L1MAB_EC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------TTTTTTTTTTTC AGTTTTATTGAGATATAATTGACATATAACATTGTATTATGTTTAAGGTGTACAACATAATGATTTGATATATGTATATA TTGTGAAATGATTACCACAATGAAGTTAATTAACACATCCATCACCT--------------------------------- ------------------------------------------- >Equus_caballus ACAAAAGAAGAAAGTCAG-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------GCAGAAAAGCAATAAACTTTCTTATAC---ATGAC-----AAATAAAA-TTATTTT--------------- --TTTTATTGAAGTATACTTGACATACAACATTATACTA-GTTTCAGATGTACAACATAACGATTCGATATTTGCATACA TCGTAAAATGATCACCACAATAACTCTAGTTA--ACATC-----------AGATTTAAAAACAATTTTT---AAGTTCCC TCAG-CTCTAATAAGAGATGCATCCCATGGCCATCTCCACCAC >Ceratotherium_simum ATAAGAGAAGAAAGTCAG-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------GAAGAAAAGCAATAAACCTTCTTATAC---ATGGCTT---AAATAAAACTAATTTT--------------- --TTTAATTGAAGTATAACTGACATACAACATTATACTA-ATTTCAGATGTACAACACAATGATTCAATATTTGTATATA TTGTGAAATGATCACCACAATAACTCTAGTTA--ACATC-----------AGATTTAAAAACAATTATT---AAGTTCCC TCAG-CTCTAACAAGAGATGCATCCCATGACCATGTCCACCAC >Myotis_myotis AGAAAAGCAGAAAGTCAGG------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------GGGGGAAAGCAATAAAAATCCTTATGC---ATGACTT---GGATTAAC-AATTTGT--------------- --TTAAATTAGGGTATAATTGA-----GACATTATATTA-GGTTCAGGTGTTCAATATAATAATTCCACATTTGTCTATA CTGTGAAATGATC-CCACAATAAGTCTAGTTA--ACATC--------------------AACAATTATT---AAATTCCC TCAC-CTCTAATAAGACATGCACCCCATAATCATCTCTACCAC >Rousettus_aegyptiacus AGAAGAGAATAAAGTCAG-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------GAAGGAAAGCAATAAATTTTCTTATATATGATGACTT---GGATTAAC-AATTTTT--------------- --TTAAATTGAGGTATA----ACAGACAACATTATACTA-GGCTCAGAAGTATAACATAATGATTCAATATTTGTATATA TTG--AAATGATCATAACAGTAAGTCTATTTA--ACATC-----------GGAGT----AACAGTTACT---AAGTTCCC T--------------------ATCCCATGATTACCTCCACCCC >Canis_familiaris ATAAGA-----AAGTCAG-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------GAAGAAAAGCAA------------CAC---ATGACTT---GGATTAAC-AA---TA--------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------AAGTTCCC TCTG-CTCTAATAAGAGACGCAGTGCATGACCATTTCCACCAT >Felis_catus AAAAGAAAAGAAAGTCAG-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------GAAGAAAAGCAA------------TAC---ATGACTT---GCATTAAC-AA---TA--------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------ACACTCCC TTAG-CTCTAACAAGCGATGCATCCCATGAACAT---CACCAC >Manis_pentadactyla AGAGAG-------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------GAGGACAAGCAAAAAACTGTCTTGTAT---AT-ACTT---GCATTAAC-AATTATT--------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------AAGTTTCC TCAG-CTCTAACAAGAGGTGCATCCTGTGA-CATCTCCAATAC >Sus_scrofa AGAAGAGAAGAAAGTCAG-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------GAAGAAAAGCAATAAACATTCTTACAT---ATGACTT---GGGTTAAA-AATCATT--------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------TAGTTCTC TCAG-CTCTAACAAGAGAAGCATTCCATGGCCATCTCCATCAC >Bos_taurus AGAAGAAAAT---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------GAAGAAAAGCAGTAAACGCTCTTATAT---ATGACTT---GGGTTAAA-AACT-TC--------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------AAATGCTC TCAG-CTCTAACAAGATAAACATTTCACGACCATCTCCATCAC >Condylura_cristata AAAAGAG----AAGTCAA-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------GAAGAAAGGCAAAAAATGTTCTTATAT---ATGAGTT---GAATTAAC-AATTATT--------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------ATGTTCCC TCAG-CTCTAGCAAGAGATGCAGCCCATGACC---TTCACTAC >Sorex_araneus NNNNNNNNNNNNNNNNNN-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------NNNNNNAAGCAATAAACTTTCTCACAC---ATGATTT---GCTTTTAA----CATA--------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------ATGTTCCT TCAAACTCTGATAAGACA--CAATCCGTGACGATCTCCATCAC >Homo_sapiens AGAAGAGAAGAAAGTCAGTGTATTGGTCCATTCTATTTATTGTATTAGTTCATTCTCATGCTACTAATAAAGACATACCA GTGACTGGGTAATTTATGAAGGAAAGAGGTTTAATGGACTCACAGTGCCATATAACTGGGGAGGCCTCAGGAAACTTACA ATCATGGCAGAAGGGGAAGCAAACACATCCTTCTTCACATGGTGGCAGACGTGCAGAGTGAAGTTGGGGAAAAGCCTCTT ATAAAACCATCAGATCCTGTGAGAACTCACTATCACAACAACAGCATGGAGGTAACTGCCTCCATGATTCAATTACCTTC CACCGGTCTGTCCCACAACACCTAGGGATTACGGGAACTACAATTCAACATGAGATTTGGATGGGGACACAGCCAACCTA TATCAGTCAGGAAGAAAGC--------TTTTTATAT---ATGATTT---GGATGCAC-AATTATT--------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------AAGTTCCC TAAG-TTGTAATGAGAGATGAATCCCATGATTATCTCTACCAG Horse61_LINE >L1MAB_EC -------------------------------------------------------------------------------- ----------TTTTTTTTTTTCAGTTTTATTGAGATATAATTGACATATAACATTGTATTATGTTTAAGGTGTACAACAT AATGATTTGA-TATATGTATATATTGTGAAATGATTACCACAATGAAGTTAATTAACACATCCATCACCTCACATAGTTA CAAATTTTTTTTTTGTTTKTGTGATGAGAACTTTTAAGATCTACTCTCTTAGCAACTTTCAAATATACAATACAGTATTA TTAACTATAGTCACCATGCTGTACATTACATCCCCAGAACTTATTCATCTTATAACTGAAAGTTTGTACCCTTTGACCAA CCTCTCCCTATTTCC-CCCACCCCCCAGCCTCTGGCAACCACCAATCTATTCTC-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------- >Equus_caballus TCACA--CCTTC------------ACAAAT---TCAGGGACACTGCCTGACAGGTAGAGTTGCTATAAAC---GCAGTGT TTTGGGT-----TGTTGGGTTTTTTTTTTTTTAGATATAATTGACATATAACATTATGTTA-GTTTCAGGGGTACAACGT AGTGATTCAA-TATTGGTATATATTGAGAAATGATCACCACAGTAAGTCTCGTTA--ACATCCATCACCACACATAGTCA CCAATTGTTTTTCT-----TGTGATAAGAACTTTTAAGATCCACTCTCTTAGCACCTTTCAGATATGCAAGACAGTA-TA TTAACTACAGTCTGTACGCTGTACCTTACAACCCCAGGCCTTATTCGTTCTATAACTGGAAGTTTGCACCTTTGGCCC-- CCTTCACCCATTTCA-CCCACCCCGACTCCCCC------------------------GTGGTG------TATTATT---A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------AAGCAAGG-CAG---TGATAGAATAGCACATTAGGATTTTG----GGCAAAATAGTTT >Ceratotherium_simum TAAAAGACCTTC------------GCAAAT---TCAGGGACACTGGCTGACAGGTAGACTTGCTATAAAA---GTAGTGT TTAGGAT-------------TTTTTTAA----AGATATAACTGATGTATAACATTATATTA-GTTTCAGGTGTACAACAT AATGTCTTGA-TATTTGTGTATATTGTGAAACAATCACCACAATAAGTCTAGTTA--ATATCCATCACTGTAGATATCTA CAATATTTTTTTCT-----TGGGATGAAAACTTTTAAGATCCATTTTCTTAGCAACTTTCAGATACACAATACGGTATTA TTAACTGCAGTCACCATGCTGTAAATTACATCCCCAGGACTTATTCATTTTATAACTGGAAGTTTGTACCTTTGGTCT-- CCTTCACCCATTTCG-TGCCCCCCA--------------------------------GCAATG------TATTTTT---A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------AAGCAAAG-CAG---TAATAGAATAGCACATTATGATTTTT----GGCAAAATAGTTT >Myotis_myotis TAACAGACCTTC------------ATAAGT---TCAGGGCCACTGCCTAATAGGTAGAGTTGCTCTAAAA---GGAGTTT ATTTTTT------------------TAAATTGAGATATAATTGACATAAAGTGTTCTCTTA-GTTTCAGATGTATAACAT AATGATTTGA-TATTTATATATATTGTGAAATGATCACCACAGTAAGTCTAGTTA--ACATCCATCACCACACATAGTTA CATGGTTTTTGCT------TGTGATGAGAACCTTGAAGATCTACTCTCTTAGCAGCTTTC-GATATGCAGTACAAGGTTG TTAACTATGGTCACCATGCTGCACATTACATCC-CAGGACTTATTTATCTTATAACTGGAAGTTCGTACTTTTGATCC-- CCTTCAATCATTTCA-CTCACCCCACCCCA---------------------------GCAGTG------TATTATT---A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------AAGCAAAATCAG---TAATAGAATAACACGCTATGATTTTT----GCCAAAATAATGT >Rousettus_aegyptiacus TAAATGACCTTT------------GCAAAT---TCAGAGACACTGCCTGACAGGTAGAGTTGCTATAAAA---GCAGTTT GTTTATT----------------TTTTAATTGAGACATAATTGACATAAAATGTTATCTTA-ATTTCAAGTGTGTAACAT ACTGATTCAATTTTTTTTATAGATTATGAAACGATCACCACAAT--GTCTAGTTA--ACATCCATCACCACAC--AGTTA CAAAATTTTTTTTCT----TGTAATATCAACTTTTAAGGGCTACTCTCTTAGCAACTTTCAAATATGCAATACAACAATA TTAACTAAAGTCTCCATGCTGTACATTACATCCTCAGCACTTATTTATCTTAT-ATTGGGAGTTTGTACCTTTTGACC-- CCTTCACCTATTTTGCCCCACCCCA--------------------------------GCAGTA------TATTATT---A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------AAACAAGA-CAG---TAATAGAATAACACACCATGATTTTT----GGCAAAATAGTTT >Canis_familiaris AAACAAATTTT-------------GCCGAT---TCAGGGACACTGCCAGGCAGGTAGAGTTGCTATAAAA---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------GCAATG------TATTACT---A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------AAACAAGG-------GAGTAAGATGAAATGCTTTGATTTTA----GGCAAAATACATT >Felis_catus AGAAAAACCTTT------------GCCAAT---TCAGGGACACTGCCTGACAGGTAGAGTTGCTATAAAA---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------GCAGTG------CATTATT---A TTATTAAAAATTTTTTAATGTGTATTTATATTTGAGAGAGAGAGAAAGAGAGAGCGAGAGAGAGCACAAGCAGGGGAGGG GCAGACAGAGAGGGAGACACAGAATCTGAAGCGGGCTCCGGGCTCTGAGCTATCAGCACAGAGCCCTATGCAGGGCTCAA CCCCACGAACCATGAGATTATGACCTGAGCTGAAATCAAGAGTTGGACTCTCAACCAACTGAGCCACCCAGGCGTCCCTA AAAGCAGTGTATTATTAAAACAAGG-------CTATAAGATGACAGGCTATGATTTTT----GGCAAAGTAGATT >Manis_javanica AAAAAGACTT--------------GCAGAT---TTAGGGACTCTGCCAGACAG----AATCGCTA-AAAA---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------GCAGTG------TAGTATA---A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------AAACAAGG-CAG---TAATAG-ATAATACACTGTGATTTGG----GGGAAAGTAGTTT >Sus_scrofa TAAAATGCCTTTT-----------GCAAAT---TCAG-GACCCTACCTGACAGGTAGACTGACTGTAAAA---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------GCAGAG------TCTTATT---A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------CAATGAGG-CAGCTATAAAAAAATAACATACTCTGCTTTTT----GGCAAAAGAGTTT >Tursiops_truncatus TAAAAGGCCTTT------------GCAAAT---TCAGGGACACTGCCCAACAGGTGGAGTGGTTATAAAA---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------GGAGGG------TATTATT---A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------CAATAAGG-TGG---TAATAGAATAATACACTGTAATTTTT----GGCAAAATAGTTT >Condylura_cristata TAGCAGCCTCT-------------GGGAAT---TCAGGCCCATTGCCTGGCAGGTAGAGTTGTTACAAAA---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------ACAGTA-----TTAATATT---C -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------AAGCACAG-CAG---CCATAGACTAACA--TTATGATTTT-----GGCAAAATAGTTT >Uropsilus_gracilis CAACTGACCTTT------------GGAAAT---TCGGAGATATTGTCTGGCAGTTAGAATTGTTATAAAA---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------GCAGTGAAATATTATTATT---A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------AAGCACAG-TGG---TCAGAGACTATCA--CTATGATTTTT----GGTGAAATAGTTT >Galeopterus_variegatus CAAAAGACCTTTCAATGTTTAGTGACAAAGACATTAGTGACACTGCCTGACAGGTGGGGTTGCTATGAAA---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------ACAGTG------TATTATT---A -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------AAATAAAG-CAG---TAATAGAATAACATACCGCGATTTTTTTTAAGCAAAATAGTTT Horse63_LINE >L1MA9_3END -------------------------------------------------------------------------------- ---TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGA---------- ---------TGTTTTGATATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACA TAGTTACCAT---TTTTTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAAATTTCAAGTATACAATACAGTA TTATTAACTATAGTCACCATGCTGTACATTAGATCTCCAGAACTTATT-------------------------------- ----------------------------------------------- >Equus_caballus ATCTGAA-TTCAGTTAAGTGGCAT---AGAAGACTGATATGAATAAATTAAATGTTTCA---ATTATGGATTA-TTATTA ----------ATTTTTATTGAGGTATAACTGACATACAACA-TTATATGAGTTTCAAGTGTACAACATAA---------- ---------TGATTTGATATTTGTGTATATTGCAAAATGATCACCAC---AAGTCTAGTTAAC--ATCCATTACCACACA TAGTTACAGATTTTTTTTTTCTCGTGATGAGAACTTTTAAGATCTACTCTCTTATCAGCTTTCAAATATGCGATACAGCA TTATTAACTATAGTTGAGATGCTGTAC------------------------ATTTTGGATTATTGTTTT---AA-GTGAT TGAAATATTAGTGCTTTCCTTTTCAGAGAGTCAAACTCTT-AAGTAT >Ceratotherium_simum ATCCGAA-TTTAGTTAAGTGGCTTAGGAGAAGACTAATATAAACAAGTTAAATGTTTCA---ATTATGGATTA-TTATTT ------------TTTTATTAAGGTATAATTGACATACAAGA-TTATATTAGTTTCAACTGTGAAACATAAATTTTGTTTT TATTGCATTTTTGTTTTTATTTGTATTTATTGCAAAACGATCGCCACAGTAAGTCTAGTTAAC--ATCCATCACCACACA TAGTTACAGAATTTTTTTTTCTTCTGATGAGAACTTTTAAGATCTACTCTCTTATCAACTTTCAAATATGCAATACAGTA TTATTAACCATAGTCGCCATGCTGCAC------------------------ATTTTGGATTATTTTCTT---AA-GTGAT TGAAATATTAGTGCTTTCTACTTCAGAAAATTGAACTC---AAATAT >Myotis_myotis ACTTGAA-TTTAATTAAGTGGCATAGGAAAAGACTAATATGGAT-----AAATATTTTA---ATTAGGGATTA-TTTGAA ---------------T-------TATAGTTGACATTC---A-GTCTGTTACTTTCAGGTGCACAACATAA---------- ---------TGA-TTGATATCTGTATATATTGGGAAATGATC-CCACAATCAGATTAGTCAAC--AGCCATCATCATACA TAGTGTTAGA---TTTTTTTCTTGTGATGAAAACTTTTAAGATTTATAATTTTATGAACTTTCAAATACGCAGTACAGTG TTACTAACTATAGTTGTGATGCTGTAC------------------------ATGATAGAT---TTTTAA---AAAGTGAT TGAAA---GAGTGCTTTCCATTTCAGAGAATTGAACACTT---GTAT >Rousettus_aegyptiacus ATCTGAA-TTTTGTTAGGTGACAT---AGAAAACTAATATGAAT-----AAATGTTTCA---TTTATGGATTA-TTTTTC ---------------TA------TTGAGATGACATAA---A-TTTTATTTGTTTCA-GTGTACAACATAA---------- ---------TGATTTGATATTTGTGTATGTTGAGAAATTATTATTATGATAAATCTAGTTAAT--ATACATCACCATGCC TAGTTATAGA---TATTTTTCTTGCGATGAGAAATTTTAAGATCTAC----TCATCAATTTTCAAATATGCAACATAATG TTATTAATAATAGTCCTTATGCTGTAC------------------------ATTATGGAT---TTTTAG---AAAGTGAT TGAAATACTAATGCTTTCCATTTCAGAGAATTAAACTCTT---GTGT >Canis_familiaris ACCTGAGTTTTAAGTAAGTAGTATAGGAGAAAACCAATATAAAGAAATGAAATGTTTCA---ATTATAGATTA-TTTTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------AAAGTGAT TGAAATATTAGCACTTTCCATTACAGAGA-TTGAACCCTT-AAATGA >Felis_catus ACCTGAGTTTTAAGTAAGTGGTATAGGAGAAGACCAACATAAATACATGAAATATTTCA---ATTATGGATTATTTTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------AAAGTGAT TGAAATATTAGCACTTTCCGTTATAGAGACTTGAACTCTT-AAGTAA >Manis_javanica GTCTGAGTTTTACTCAGGTGGCAGAAGAGAAGATTAATGTGAATAAATGAAATGTTTCA---AATATGGG-TA-TTTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------GA-GTGAC TGACATATTAGTGCTCTCCATTTCAGAC--TTGAACTC---AAATAA >Sus_scrofa ATCTGAATTTTATTTAAACGTAAT---AGAAGACTAATATGAATACATGAAATGTTTCA---ACTATGGATT----TTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------AA-TTGAT TGACATATTAGTGCTTTCCATTTCAGAGAACCGAACTCCTCAAATAT >Bos_taurus AGTT--GTTTTAGCAAAGTAGCATAGGAGAAGATTAATATGAATCAATGAAGTGTTTCA---CTGATGGATT----TTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------AA-GTGAT TGAAATATTAGTGTTTTCCATTTCAGAGAATTGAACTCTT-AAATAT >Condylura_cristata AACTGAGTTTAAGTTAAGTGACATAGAAAATTTCTAATATGAATATTTGAAGAGTTTCA---ATTCTGGGTT----TTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------AA-GTGAT TGAAATGTTAGTTCAATCTATTTCAGAGAACTGAAATATT-AAATTT >Solenodon_paradoxus ACCTAAGTTTTAATTAAATAGCAGAGAAGA---CGAATTTCAGTAAATGAAATGTATCA---ATTATGAATTA-CTTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------AA-ATGAT TGAAATATTAGTGCTTTCTATTTCAGAGAACTGAATTCTT-AAATAT >Homo_sapiens ATTTGAG-TTTAGTTAAGTGGCATGGGGGAAAATTAATATGAACAAATGATATATCTTA---ATTATAGATT--TTTTTA -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------AA-G-GAT TGAAGCATAAGAGTTTT-TATTTCAA----------TCTT---ATTT Horse71_LINE >L1MA9_3END ----------------------------------------------------------------------------TAAT TAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTT TATTTGTCAATTATACCTCAATAAAGCTGGAAAAA--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --- >Equus_caballus GACAGCAGGTGCGGCAAAC-AGAGTTTGAACTCT---GGAATTAGGA-CTAGGTT---AGAATCATATCAGAC------- -----TTCTTGTGGT-ATCATTTCGCAATATATAAAAATATTGAATCATTATGTTACACACCTGAAACCGATATAATGTT T-TGTGTCAATTATATCTCAAT----TTTTAAAAAA---AG-AATCATATCAGC---CCCACTGCTTAAA-ACAATGTAT GAC----CTC---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------GGTTAGGTGACTTGGCTTCT-C CCA >Ceratotherium_simum GACAGTAGGTGCAGTAAAC-AGAGTTTGAATTCT---GGAATTAGGA-CTAGATT---AGAATCATATCAGAC------- -----TTATTGTGGTGATCATTTCACAATATATACAAATATTGAATCATTATATTGTACACCTGAAAC-----TAATATT T-TATGTCAATTATATCTCAAT----TTAAAAAGAA---AG-AATCATATCAGC---ACCACTGCTTAAA-AAGATGTAT AAC----CTT---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------GGTTAGGTGATTTGCCTTCT-C CCA >Myotis_myotis GACAGAAGGTATAATAAAC-AGAGTTTGCACGCT---GGAGTTAGGAGCTGGGTT--------------AGAC------- -----TCATTGTGGTGATTATTTCACAATATATACAAATATTGAATCACTATGTTGTATATCTAAAATTAACATGAGGTT A-TATGTCAATTATATTTCAGC----TAAAAAAAAG---AG-AATCAAATCAGC---CCTACTGCTTAAA-AAGTTGTAT GAC----CTC---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------AGCTAGATGATTCGGCTTTT-C CCA >Rousettus_aegyptiacus GAGAGCAGGTGCAGTAAAC-AGAGTTTGAACTCT---GACACTAGGAGCTAGGTT---AGAATCATATCAGAC------- -----TCA-TGTGGTGATCATTTCACAATATATACAAATATTGAATCAC--TGTTGTACACCTGTAACTAATATAATGTT A-CATGTCAATTATATTTCAAT----T---AAAAAA---AG-AATTGTATCAGC---TCTGCTACTTAAA-AAGTTGTAT GCC----CTC---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------AGTTAGACGACTTGACTTCTAT CTA >Canis_familiaris GACAGCAGGGGCAGAAAAC-GGAGTTTGAACTCTGGAGGAGTTCGGAGCTAGCTT------------------------- -------------------------------------------------------------------------------- ---------------------------------------AG-AATCATATCAGC---TCTGGTGTTTGAA-AAGATGTAT GAC----TTC---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------ACTTAAGTGACTTGGCTTCT-C GCA >Felis_catus GATATCAGGTACAGAAAAC-AGAGTCTGAACTCT---GGA----GGAGCTAACTT------------------------- -------------------------------------------------------------------------------- ---------------------------------------AG-AATTGCATCAGC---TCTGGCGCTTAAA-AAGATGCAT GAC-----TTGGAGTGCCTGGGTGGCTCAGTTAGTTAAGCGTCTGACTTTGGCTCAGGTCATGATTTCATGGTTTGTGAG TTCAAGCCCCACAGTGGGCTCTCTGCTGTCAGCACAGAGCTGGCTTTGGATCCTCTGTCTCCCTCTCTCTGCCCCTCCCC TTCTCAAGAATAAATAAACATTGGGGCACCTGGGTGGCTCAGTCGGTTAAGCGTCCCAACTTCGGCTCAGGTCACGATCT TACTCTTACAGTTTGTGAGTTCGAGCCCCACATCGCGTCAGGCTCTGTGCTGACGGCTCAGAGCCTGGAGCCTGCTTCAG ATTCTGTGTCTCGTTCTCTCTCTGCCCCTCCCCCACTTGTGTTCTGCCTCTCTCCATCTCTCAAAAGTAAGTAAATGTAA AAAAAATTTTTTTAAATAATAAATAAACATTTATAAAAAAAAAAAAAGATGTGACTTCAGGTGGGTGACTTGGCTTCT-C CCA >Manis_pentadactyla GACAGCAGGCACAGAAAAC-AGAGCCTGAACTCTGGAGGAGTTAGGAGCAAGCTT------------------------- -------------------------------------------------------------------------------- ---------------------------------------AG-GATCATATCAAC---CCCACTACTAAAA-AAGATGTAT GAC----CTT---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------GGGTAGGTGACTTGGCTTCT-A ACA >Sus_scrofa GATGACAGGTGCAGAAAAC-AGAGTTTGAACACT---GAAGTTCAGAGCTAGCTT------------------------- -------------------------------------------------------------------------------- ---------------------------------------A--AATCCTATCAGC---CCTGCTGCTTAAA-AAGAT---- -------CTT---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------GGCTGGGTGACTTAATTTCG-C TCA >Bos_taurus GGTAACAGGTGCAGGAAACAAGAGATTAAACTCT---GGAGTTAGAAGCTAGCTC------------------------- -------------------------------------------------------------------------------- ---------------------------------------A--AACCTTATCATC---CCCACTGCTTAAACAAGATGTAT GAT----ATT---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------GGCCAGGCGACTTAGCTTCT-C CTA >Condylura_cristata GACAGCAGGTGCAGCTAAC-AGAATTG-----------------GGAGCTATAAA------------------------- -------------------------------------------------------------------------------- ---------------------------------------AG-AATCATCTCAGA---TCCTTTGCTTACA-AAGATGTAA GACCTTGCTT---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------GGTTAGATGACTCAGCTTCT-G TCA >Solenodon_paradoxus GATAGCAGGTGCAGTAAAG-AGAGTTTGAACTCT---AGAGTTAAGAACTAGGTT------------------------- -------------------------------------------------------------------------------- ---------------------------------------AG-AATCCTATCAGT----CCTGTGCTTAGA-AAGATGTCT GAT----GTC---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------TATTAGGTGACTTAACTTCT-C CCA >Homo_sapiens GACAGCAGTTGCGGCAAAC-AGAGCTTGGACTCT---GGAGTGAAGAGCTAGGTC------------------------- -------------------------------------------------------------------------------- ---------------------------------------AGAAATTAAATTAGC---CCCACTGCCTAAA--AAATACAT GAC----TTT---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------TGTTAGTTGACTTGGTTTCT-T CCA Horse74_LINE >L1MAB_EC -------------------------------------------------------------------------------- ---TTTCACAATATATACATATATCAAATCATTATGTTGTACACCTTAAACATAATACAATGTTATATGTCAATTATATC TCAATAAAACTGAAAAAAAAAAA--------------------------------------------------------- --------------- >Equus_caballus AAAATAAATTAG-----GAG---TCACTATTCTCTCCCACCCTAAACATTCA-TCCTAGTATT---AAAATGTAGGAT-T ----------------GCAAACATCGAATCTTTATGTTGTACACCCTGGAACTGACATAATGATGCACTTCAATTATACC TCAATTTTAA----------------AAAAAGTAGAATT---GTACACCAGGCAGCAGCCTTTTAAGACACAGAGTCTAA TATCCATCACTGTAT >Ceratotherium_simum AAATTAAATTAG-----GGG---TCACTATTCTCTCCCACCCTAAGCATTCA-TCCAAGTATT---AAAATGTAGAAT-T ----------------GCAAATATTGAATCACTATGTTGTACACC-TGGAACTGATGTAATGATGTATGTCAATCATAAC TCAATAAA------------------AAAATGTAGAATT---GTACGCCAGGCAACAG-CTTTTAAGACACAGAGCCTAA TATCCATCACTGTTT >Myotis_myotis AAATTAAGTGGGAGGGAGGGGTGTCACTATTCTCGCCCATCCAAAGCATTCA-CCCAAGTATT---AAAAAGTAGAATAT ----------------GCAAATATTGAATCATTATGTGGTACACC-TGGAAATGATATAATGTTGTATGTCCATTATACT TCAAGGAAA-----------------AAAATGTAGAATT---GTACAGCAGGCAGCAG-CTTTTAAGACACAGAGCCTGA TATCCATCACTGTTT >Rousettus_aegyptiacus AAATAAAATTTG-----AGGAGTTCACTATTCTCTC-CACCACAAGCATTCC-TCCAAGTATT---AAAATGTAGAAT-T ----------------GCAAATATCAAATCATTGTGTTGTATACC-TAGAACTGATATAATGCTGTATATCAATTAGACC TCAATTTAGA----------------AAAATGTAGACTT---GTATACCAGGCAGCTG-CTTTTAAAACACAGAGTCTAA TATCCATCATTGCAT >Canis_familiaris CGATTAG----------AGG---TTACTATTCTCTCTCACCCTAAGCATTTATTCCAAGTATG----------------- -------------------------------------------------------------------------------- --------------------------AAGGTGTCGAATT---TTATACCTGGCATCAG-CCTTTAGGACCC--AGTCTAC ACTATATTACTGTAT >Ailuropoda_melanoleuca AGATTAAATTAG-----GGG---TTACTATTCTCTCCCACCCTAAGCATTCA-TCCAAGTATT----------------- -------------------------------------------------------------------------------- --------------------------AAGGTGTCAAATT---TTACACCTGGCAGGAG--ATTTAAGACCC--AGTCTA- CATATATCACTGTAT >Manis_pentadactyla AAATTAAATTAG-----GGG---TCACTGTTCTCTCCCTCCCTAAGCATTCA-TCC------------------------ -------------------------------------------------------------------------------- --------------------------AAATTG-AGAATT---TTACACCTGGCAGCAG-CTTTTAAGACAC---ATCGAA CATCCATCACTGCAT >Vicugna_pacos AAATTAAAATA------GGGGGATCATTATTCTCTCTCATCCTAAGCATTCA-TCCAAGTATT----------------- -------------------------------------------------------------------------------- --------------------------AAAATGTAGAATT---TTACACCTGGCAGCAG-CTTTTAAGACAC--AGTTTAA TATCCATCATTGTTC >Bos_taurus NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCACCCTCAGCATTCG-TCCAAATATT----------------- -------------------------------------------------------------------------------- --------------------------AAAATACAGAATT---TTACCCTTGGCAGCAG-CTTCTAAGACAT--AGTATAA TAT------CTGTAT >Condylura_cristata CAGT-AAGTTAT-----GGG---TCACTATTCTCTTCCAGCCTAAGCATTGA-TCCAAGTATT----------------- -------------------------------------------------------------------------------- --------------------------AAAGTATAGGATT---TTATACCAAGCAGCAA-TTTTTGAGGCATAAAGTATAA TATCCATCACTGTAT >Erinaceus_europaeus AAATTAAATTTA-----AGG---CCACATTTCTTTCTCAATCTAAGCACTCA-TCCATGTATT----------------- -------------------------------------------------------------------------------- --------------------------AAAGTGTAGAACT---TTATACCAGGCAACGT-CTTTTAAGATT---AATCTAA AATCAATCATTGTAA >Homo_sapiens AAATTAAGTTAG-----GGGG--TCACTATTCTTTCTCACCCTAAGTATTCA-TTCAAGTATT----------------- -------------------------------------------------------------------------------- --------------------------AAAGTGTAGAACT---TTACATCAGGCAGCAG-CTTTTAAAACATAGAGTCTAA TACCCATCATTTTGC Horse75_LINE >L1MAB_EC ----------------------------------------------------------------------------ATGG ATGTGTTAATTAACTTCATTGTGGTAATCATT-TCACAATATATACATATATCAAATCATTATGTTGTACACCTTAAACA TAATACAATGTTATATGTCAATTATATCTCAATAAAACTGAAAAAAAAAAA----------------------------- -------------------------------------------------------------------------------- ---- >Equus_caballus TGGTGCACCAGCAAGGCTAGGAAGCTT--GGGCCGGTGAAAACTCCTCGGCA-----AGAGCAGAGGACGGAC------- ----GGGCGCCAGACTTACCGTGGTGGGCATT-TTGC-----ACACAAATGTTGAGTCATTATGTTGAACACCTGAAAC- TAATA---TGTTATATGTTAATTATATTTCAACTAAA--AAAAATCTCAACTACAACAACA------------------- --AAAGACAAAGA--------G-TTTCTTTT-----CTGTCTTCCAC------AGGCAGTCAGAGAGCATGTTGTC-AGT CCGG >Ceratotherium_simum CGGTGCAGGGACGAGGCTCTGAAGCTCCAGGGCAGGTGAAAACT-CCCAGCA-----AGAGTAGAGGACAGAT------- ----GGTAGCTAGACTTATCGTGGTGATCATT-TCGC-----ACACAAGTATCAAATCATTATGTTGTACACCCGGAAC- TAATATCATGTTATATGTCAATTATACTTCAACCAAA---GAAAACTCAACTACAAGAACA--------AAAATAAAAA- --AGAGTCACAGGTGGAA---T-TTTCTTTT-----CCGTCTTCCAT------GGGCAG----AGAGTGTTTTGTC-AGC CCGG >Myotis_myotis CGGAGCACAAACA-GGCTCTGCAGTTCCAGGATGTGTGAAAA-----------------------GGAC-GGT------- ----GGCAGCGAGACTT---GTGGCGAGCGTT-TCTCAGTCTATGCAAATATCAAATCATCACGCTGTACG-CTGAAAC- CAGTACAGTGTTACCTGTCAACTCT--CTCAATAAGAACAAAGAAACCAATAA--GAAACCCCTCAAAGACAAGAAAGC- --AGAGTTAAGGATGGGA---T----CTATT-----CTGTCTTCCAC------AAGCA---------------GTC-GGT CCTG >Rousettus_aegyptiacus CTGTGCACAAATA-GGCTCTGTACTTCCGGGACAGGCGGAAA---CCCAACC-----GGAGTCAAGGACGGAT------- ----GATCACTAGAGTT---GTTGTGATCACTGTCTCAGTGTAGACAAATGTTGGATCATCGTGGTGTACACCTGAAAC- TCATATAGTGTTATATGTCGATTATATCTTAATGAAAACAAAGAAACGAACAACAAAAAAACTAAAGACAAAGGAAAAA- --AGAGTCGAGGATGGAT---T-TTCCTTTT-----CTGTCTTCTTCCA---CGGACGGTC--AGAGTGCGTGGTC-AGT CTGC >Canis_familiaris CGGCGCACAAATAGAGCTCTGTGCTTCCAGGACAGGTGAGATCTCCTTGGCA---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --AGAGGCAAGGGTGGAA---T-TTTCTTTC-----CTGTCTTCCAT------GCGCAGGC--CCGCTGTCCTGTC-AGT CTGG >Felis_catus CGGTGCACAAATAAGGCTCTGTCCTTCCAGGACAGGTGAGATCTCCTTGGCA---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --AGAGGCGAGGATGGAA---T-TTTCTTTC-----CTGTCTTCCGT------GGGCAGCT--GGAGTATGTTGTC-AGT CTGG >Manis_pentadactyla CAGTGCACAAACAGGGTGCTGCAGTTCCAAGACAGGTGAAAAGTCCTTGGCA---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --AGAGCTGGGGATAGAA---C-TGTCTTTTCTTTTCTGTCTTCCACTGTCTTCCGCAGCTGAAGAGCGTGTTGTC-AGT CCAG >Sus_scrofa CGGTGCACAAACGAG-----GCACATCCAGGACAGGTGAAAACTGCTCAGCT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --AGGGTCGGGGATGGAC---T-TTTCTTTG-----CTGTC------------------------------------AGC CCAG >Tursiops_truncatus TGGTGCACAAACAAG-----GTAGTTCCAGGACAGGTGAAAACTGCTCCACA---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --GGAGTGGGGGGTGGAA---T-TTTCCTTC-----CTGTCTTCCA-------GGGC------AGAGTGTACTGTC-ATT CT-G >Condylura_cristata AGGTCCACAGA----ATTCTGTGGCCCTGGGGCAGGTGA-AATTCTCTGGC----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --AGAAGTGAGGATAAAA---T-TTTC-----------------CAT-------GGGGCTAAGTGTGTGTGCTGTC-AGC AC-A >Sorex_araneus TTGTGTATAAAAATGATTCCGCAGTGCCAGGG--------AACTCCTGGGTA---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --AGAG-CAAGTATGGGA---AGCTTCTTTT-----CTGCCATTTCC---------TGACCAAAGTGTGTGGGGCCTTAT ATGG >Homo_sapiens CGATGCACTAAGAAGGCTCTGTGGTTCT-GGGTGGGTGAAAAGTCCTCGGCAGC-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --ACAGTCAAAAATGAGA---T-TTTCTTTT-----CTGTCTTCCATTG----AGGAAGTCAAAGAGTGTGTTGAC-AGT CTGG Horse78_LINE >L1MA9_3END ---------------------------------------------------------------------------TTTTT CCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATATACGTATA C----ATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACA-TAGTTACCATTTTTTTG----- ----------------------------------------------------------------- >Equus_caballus CTTTATCTCTATATTGGTAA--AT-AAATTTTTGTACTTTTC----TTTTTATTCTTT---TGGGTATTTCT-------- ---TTTTTATTAAGATATAATTGACATAT-AACATTATATTAGTTTCAAGTGTACAAGATAATGATTCAATATTTGTATG T----GTTGTGAAATGATCACCACAATAAGTCTAGTTAAC--ATTTGTCATCAGACAATTGTA---------------TT GGTATTTC---AATC-CCAAAATTA---AACACTAGAAGAATCGAATACAGATGGGCTTTTCTGA >Tapirus_indicus CTTTATCTCTATATTGGTAA--GT-AAATTTTTGCACTTTTC----CTTTTATTCCTT---TGGGTATTTCT-------- --TTTTTTATTAAGACAGAATTAACATAT-AACATTATATTAGTTTCAGGTGTACAACATAATGATTTGATATTTGTATA T----GTTGTGAAATGATCACCACAATAGGTCTAGTTAAC--ATCTGTCATCATACAACTGTT---------------TT GGTATTTC---AGTC-CCAAAATTC---AACACTAGAAGAATCAAATACAGCTGGACTTTTCTGA >Myotis_myotis CTT-ATCTCTATGCTGGTAA--AC-AAATTTTTGTAGTTTTC----TTTTTATTCTTT---CAGGTATTTTT-------- --------ATCAAGATGTAATTAACACAT-AACATTGTATTAGTTTCAGGTGTACAACAT-ATGATTTTATATTTGTATA TACTCATTGTGAAATGGCCACCACAATAACTCTAATTAAC--ATCTGTGACCATAAAATAGTA---------------TT GGTATTTC---AATC-TCAAAATTC---AATACTAGAAGAATCAAAGATAGCTGGTATTTTCTGA >Rousettus_aegyptiacus CTT------TATATAGGTAA--AG-ACATTTTTGTAATTTTT------AAGATTCTTT---TGGGTATTTTT-------- -------TATCATGATATAATTAACATAT-AACATTATATTAGCTTCAGATGTACAACATAATGATCTGACATCTGCATA T----ATTGAAAACTGACCACTATAGTAAATATAGTTAAC--GTCTGTAACCATATAGTAGTA---------------TT GGCATTTC---AATT-CCAAAATTT---AACACTGGAAAAATCAAAGGCAGCTGGAATTTGCTGA >Canis_familiaris CTCTTTCTCCGCATTGGTAA--AT-AAATTTTTGCACTGTTC----TTTTTATTCTCT---TTGGTA-TTCC-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------AATC-CCCAAATCC---AACATCAGAAGAAT-AAACACAACTGGAATTTTCTGA >Felis_catus CTTTTTCTCTACATTGGTAA--AT-AAATGTTTGCCCTTTTC----TTTTTATTCTCT---TTGGTA-TTCT-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------AATC-CCCAAATTC---AACACTAGAAGAATCAAACACAACTGGGCTTTTCTGA >Manis_pentadactyla TTCTTTCTCTATATTGGTAA--AT-AAATTTTTGTAATTTTC---TTTTTTATTCTTT---GTGGCA-TTTT-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------AATG-ACACAATTC---AACACCAGAAGAATAAAATACAGCTGGAATTTTCTGA >Sus_scrofa CTCTTTTTCTGCATTGTTAA--ATAAAATTTTTTCACTTTTC----TTTTTATTCTTT---CTAGCA-TTTT-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------A-TC-CCAATATTC---AACACTAGAAGAATCAAGTATAGCTAGAATTTTCTAA >Tursiops_truncatus CTCTTTTTTTGTATTGGTAA--AT-AACTTTTTGTACTTTTC----TTTTTATTCTTT---TTAACA-TTTT-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------A-TC-CCAAAATTC---AACACTAAAAGAATCATGCACTGCTAGAATTTTCTGA >Condylura_cristata CTCTATTTATATGTCTGTGT-TGT-AATATTTTGCGCGTTTG-GCATTTTTTTTTTTT---TTGTCA-TTTT-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------GGTGTTCAA--TCTGAAAACACTAGAATAGTCAAGTGTAGCTGAAATTTTCTGT >Scalopus_aquaticus CTCTATTTATATTTCTGCATTGGT-AATGTTTTGCCCTTTTTGGTATTTTTTTTCTTT---TCAGTG-TTTT-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------AATC-TCAA--------GACACTAGAACAGTCAAGTGCAGCTGTAATTTTCTGC >Homo_sapiens CTCTATCT------TGGTTT-------TTTTTTTTACTTTTC----TTTTTACGCTTT---TTGGCA-TTTC-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------AATC-CCAGCATTC---AACACTAGAAGAATCAAATACAGTTGGAATTTTCTGA Horse81_LINE >L1MAB_EC ----------------------------------------------------------------------TAAGATGAAT AAGTTCTGGGGATGTAATGTACAGCATGGTGACTATAGTTAATAATACTGTATTGTATATTTGAAAGTTGCTAAGAGAGT AGATCTTAAAAGTTCTCATCACAMAAACAAAAAAAAAATTTGTAACTATGTGAGGTGATGGATGTGTTAATTAACTTCAT TG-TGGTAATCATTTCACAATATATACATATATC---AAATCATTATGTTGTACACCTTAAACATAATACAATGTTATAT GTCAATTATATCTCAATAAAACTGAAAAAAAAAAA--------------------------------------------- ---------------------------- >Equus_caballus TTCTTTATACTTTTC--TTGAATATGTTTAGATTAGTTTTACAGTCAGAGAA---ATA-CACTAAAA----------AA- ----------CATATAATATACAACATGGTGACTATAGTTAACAATACTGTATTGTACATTTGAAAGTTGCTAAGGGAGT AAATCTTA----------TCACAA-----GAAAAAAAATTTTTTACTATGTATGGTGATGGA--TTTTAACTGAACTTAT TG-TGGTGATCATTTTGTAATATCTACTAATATG---GAATCATTATGTTGTACACCTGAAGCA-AATATAATGCTATAT GTTAATT-------------------------------ATAGCTCAATA---ACA------AAAAGTCCAATTGAGACAT ACATCTATATTGAAGGCCTATTATCCAA >Ceratotherium_simum TTCTTCATACCTTTC--TTGAATAAGTTTAGATTAGTCTTATGGTCAGAAAA---ATA-TACTAAAA----------AA- ----------TATATAAGGTGCATCGTGGTGACTATAGTTAACCATACTGTATTGTACATTTGAAAGTTGCTAAGAGAGT AAATCTTACAAGTTCTCATCACAA----GAAAAAAAAATTTGTAACCATGTGTGGTGATGGA--TGTTAACTGGACTTAT TG-TGGTGATCCTTT------------------------ATCACTATGTTGTACACCTTAAACA-AATATAATGTTATAT GTCAATT-------------------------------ATAGCTCAATA---ACA------AAAAGTGCAATTGAGACAC ACATCTATATTGAAGCACTATTATCCAA >Condylura_cristata ATCTTCATACTTTTC---TGAATAAGTCTGGATTTGTTTTATGGTCAGGAAA---ATTATGCTATAA----------AGG AAGTCCTGGGCATATAATGTCCAGTTCTGTGACTATGGTTAACAATAGTGTATTGCATAATTGAAAGCTGCTAAGGGAGT ATTTCTTATCAGTTCTTCTAAGGAAAAAAAAAAAAAA----------CTGTGTGCTGATAGA--TGGTAACTGGACTTAA TGATAGTGATCATTTTACTTCATCTATGTAACTCTCAAAAGAATTATGCTTTATACCTGAAACA-AATATAA---TCTAT GTCAATT-------------------------------ACATCTCAATT----TA------AAAAGTCCAATCATGAC-T ACATTTATGTTGACATGCCATTTTCTAA >Solenodon_paradoxus TGTGTCATA-TCTTC--TTGAATAATTTCAGA-TAGTTTTATGGTCAGAAAT---ATAGTACAAAAA----------AA- --GTCATGGGCATGTAACATACAGCATGGCGACTGCAGTTAATAACACTGTATTGTATATTTGAAAGTTACT--GAGAAT GAATCTTAAAAGTTCTCATTACTA----GGAAAAAAA---TGTGAATATGCATGGTAATGGA--TTTCAACTGGACTTAT TG-TGGTGATCATTCTGCAATACATAGAAACAAC---AAAT---TATGCTGTACATCTGAAACT-AATACAGCATTATAA GTCAATT-------------------------------ATATTTCAATT---TTTT-----AAAAGTCCAATTAAAACAC ACATCTATGTTGAAGCACTATTAACCAA >Canis_familiaris TTCTTCATGTTTTTC--ATGAAT----------TCGTTTTGTGGTCAGAAGC---ATA-TACTACTT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------AAAAAGAAAAAAGGTCCAATCGGGACAC ACAATTATGTTGGAGCATCATTATGCAA >Felis_catus TTCTTCATATTTTTC--ATGAATAAGTT-----TAGTTTTGTGGTCAGAAGA---ATA-CATGAC-T------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------AAA------AAAAGTCCAGTCAGGACAC ACATTTATGTTGAAGCACCATTATGCAA >Manis_pentadactyla TTCTTCATGCTTTTC--TTGAACAAGTTTCGATTTGCTTTGTGCTCATAAAA---ATA-TACTATAA------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------AAAA-----AAATGTCCAGTTGGGACAC ACATCTACACTGAAGCACCATTATGCAA >Sus_scrofa TTCTTCATCCTTTCC--TTGAATAAGTTTAGATTAATTCTGTGGTCATAAAA---ATA-CACTATTT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------TTTT------TAAATCCAACTGGGACAC ACATCTATGTTGAAGCACCCTTATACAA >Bos_taurus TTCCTCATACTTTTC--TTGAATCAGTT-----TCATTCTGTGGTCAGAAAA---ATA-TACTGTTA------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------AAAA------CAAGTCCAACTGAGACAC ACATCTATGCTGAAG-ACCCTTCTACAA >Myotis_myotis TTCTTTATACTTTTC--TAAAATAAGTTTAGAATAGTTTTTTGGTCAGAAAA---ATA-TACTATTA------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------AAAG-----AAAAGTCCAATTGGTACAT ACATCTATGTTGCAACACCATCATTCAA >Rousettus_aegyptiacus TTCCTTATTTTTTTTTATTGAATAACTTTAGACTAGTTTTGTGGTCAGAAAA---ATA-TACAATTT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------TTTA------AAAATCCCATTGAGAC-- ACATCTATATTGCAGCATCATCATGAAA >Homo_sapiens TTCTTCGTACCTTCC--TTGAATAAGTTTAGATTCATTTTGTTAACAGAAAA---ATA-GAATA-TT------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------TTT-------TAAGTCCAATCAAGACAC ACATCTATATAGAAGCATTACTACACAA Horse83_LINE >L1MAB_EC -------------------------------------------------------------------------------- ------------TTTTTTTTTTTCAGTTTTATTGAGATATAATTGACATATAACATTGTATTATGTTTAAGGTGTACAAC ATAATGATTTG---------ATATATGTATATATTGTGAAATGATTACCACAATGAAGTTAATTAACACATCCATCA-CC TCACATAGTTACAAATTTTTT----TTTTGTTTKTGTGATGAGAACTTTTAAGATCTACTCTCTTAGCAACTTTCAAATA TACAATACAGTATTATTAACTATAGTCACCATGCTGTACATTACATCCCCAGAACTTATTCATCTTAT-----AACTGAA AGTTTGTACCCTTTGACCAAC----------------------------------------------------------- ----------------- >Canis_familiaris A-ATTTTTAAAAAAGGAAGGAAGAAGAAAAAGTTCACCAAAAGATG--GAGAAAT-AGCAAGTGACC-ATTTT------- -------------------------AAAAAATTGACATACAGTTTACATATAATATTATGTTA-GTTTCAGGTATACAAC GTAATGATTTGTTGTACAGTATATTTGTATATATTGCAAAATGATCACCACAATAAATCTAGTTA-----TCCATTG-CC ACACATAGATACAAATATTTCTCT-TTTTTTTCTTGTGATGAGAACTTTTAAGGTCTACTCTCTTAGCAACTTCCAAATA TACAATCCAGTATTATTAACTATATTTATCTTGCTGTA---------CCTAAGACTTTTTCGT-TTATTTTATAACTGGA AGTTTGGACT--------------TCCCTTCAC-----TTT---TTGATGTCAGGCCA---------------ATTTTTC TGTCTGGTCTCTGCCTC >Felis_catus A-ATTTTTAAAA----AAGGAAGATGAAAAGGTTCACCAAAAGATG--GAGAAAAAAGAAAATGGCCCTTTTT---TTAT ----CTTAA----------------AAAAAATTGAGAAACAATTTACATATAACATTACATTA-CTTTCAGGTATAAAGC ATAATGATTTG---------GTATTTGTATATATTGCAAAACGATCACCACAAGAAATCTAGTTA--ACATCCATCA-CC ACACATAGATACCAATTTTTCTTT-TTTTTTTCTTGTGATGAGAACTCTTAAGATATA-----TCAATGACTTCCAAATA CACAATACAGTATTATT-ATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNN--------------NNNNNNNNN-----NNN---NNNNNNNNNNNNNN---------------NNNNNNN NNNNNNNNNNNNNNNNN >Equus_caballus A-AT--TAAAAAC---TAGAAAGAAGAAAAGGTTCACCAAAGGATG--GAGAAATAAGCAAGTAGCCTTTCTT---TCCC TTCACTTTT----------------AAAAAATTGAGATATAATTAGCACATAACATTATATTA-ATTTCAGATGTACAAG ATAATGATTTG---------ATATTTGTATGTGTTGTGAAATGATCACCGCAATAATTCTAGTTA--AC-TTCATCAGGT ACACATAAGTACAAGTTTTTCTTTGTTTTTTTCTTGTAATGAGAAATTTTAAGATCTGTTCTCTTAGCAACTTTCAAATA TACAATTCAATATTATT-ATTATAGTTACCAAGCAGTACATTACATGCCTAGGACTTATTTATTTTGTTTTGTAACTGGA AGTTTGTACC--------------TCCCTTCAC-----TTT---TTGAGGTCAGGCCA---------------ACTTTTC AGTCTGGTCTTTGCCTC >Ceratotherium_simum A-AT--TAAATAA---AAGGAAGAAGAAAAGGTTCACCAAAGGTTG--GAGAAATAAGCAAGTGGCC-TTTTT---TCCC TTCACTTTT----------------TAAAAATTCAGATATAATTGACACATAACATTATATTA-GTTTCAGGTGTACAAC ATAATGATTTT---------GTACTTGTATGTATTGTGAAATGATCACCACAATG--TCTGGTTA--ACAT-CATCA-CC ACACATAGGTACAAATTTTTCT---TTTTTTTCTTGTGATGAGAACTTTTGAGATCTATTTTCTTAGCAACTTTCGAATA TCCGATACCGTATTCTT-ACTATAGTCACCATGCTGTACATTACATCCCCAGGACTTATTTATTTTATTCTACAACTGAA AGTTTGTACC--------------TCCCTTCAC-----TTT---TTGAGGTCAGGCCA---------------ATTTTTC TGTCTGGGCTCTGCCTC >Vicugna_pacos A-TTGACTGAAGCTAAAAAAAAGAAGAGAAAGTTCTCCAAAGGATG--GGGAAATAAGCAAGTGGCC-TTTTT------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------CTCCTTCAC-----TTT---TTGATG-CAGGCCA---------------ATTTTTC AGTCCTGTCGCTGCCTC >Bos_taurus A-AG--ACAAAAAAAAAAGGAAGAAAAAAAGTTGCCCCAAAGGGTG--AACAAATAAGCAAGTGGCC-TTATT------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------CTCCTTCAC-----TTT---TTGATG-CAGGGC----------------AGTTTTC AGTCTGGTCTCTGCCTC >Desmodus_rotundus A-TT--TTAAA-----AAGTAAGAAGAAAAGGTTTACCAAAGGGTG--GGGAAATAAACGAGTGGCTTTCCCC------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------CCCCTGAAC-----ATT---TGGATGTCAGACCA---------------ATTTTTC ATTCTGGTCTCTGCTTC >Rousettus_aegyptiacus A-AT------------TATAAAAAAGAAAAGGTTCATCAAAGGATG--GAGAAATAAGCAAGTGGCC-TTTTT------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------CTCCTTCAA-----TTT---TTGATGTCAGACCA---------------ATTTTTC AGTCTGG------CCTC >Condylura_cristata A-AT--TTAAAAA---AAGGAGGAAGAGAAGGTTCACCAAAGGATGATGGCGAGTAAGCAAGTAGCC-TTTTT------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------CCCCTTTAC-----TTT---TTGATGTCCAGTGA---------------ATTGTCC -CACT-GTCTCTGCTTC >Erinaceus_europaeus ATATTTTT----------GAAGGAAGAAAAAGTTAATTAAAGGATG--GAGAAGAAAGTAATT-----TTGTT------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------CC----CACTTTTCTTT---TTG-TGTCAGGCTA---------------ATTTTTC --TCTGGTCTTTGCCTA >Homo_sapiens A-AT--TT------------------AAAAAGTT-----AAAGATA--GAGGAATAAGCAAGTGGCT-TTTTT------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------CCCCTTCAC-----TTT---TTGATTTCAGGCCATTTGATTTCAGGCCAATTGTTC AGTCTGGTTTCTACCTC Horse84_LINE >L1MA9_3END -------------------------------------------------------------------------------- ----------------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAAC- -------------GTGATGTTTTGATATACGTATACATTGTGAAATGAT--TACCACAATCAAGCTAATTAACATAT--- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------- >Canis_familiaris TCTAGGACTGTGCCTGTTACATTGTAGGTGCTTGAATAATTGAATGAC---TAAGTGTCAAGCA---CATATATGTATGG ATGTATGTGTATATATGTATAATTGCA-TATATATATGTAACTGACATAT----AACCTATTAGTTTCAGGTGTGCAAC- -------------CTAATGATTCAATATTTATACATACTGTGAAATGCC--CACCACAATAAGTC--------------- TATGTGTTAAGCA---TGTTGAA-TGCAGTATCTCATTTAATCCTCACAACAAGGGACGCCTGAGCATCTGCCTTCGGCT CAGGGTGTGATCACTGAGTCCTGGGATCGAGTCCTACATTGGGCTTCCTGCATGGGGTCTGCTTCTCCCTCTGCCTATGT CTCGGCTTCTTTCTTTCTGTATCTCTCATGAATAAATAAATAAAATCTTAAAAAAAAATCCTTACAACAACTCTAT---G AGGTAGATACT >Felis_catus TCTAGGACTGTGCCTGTCACACAGTCAGTGCTTGAATCATTGAATGAA---AATGTGTCAAGCG---TATATA------- ----------------------------TACACATAAGTGATTGACATAT----AGCATAATAGTGTCGGGTGTACAACA TAATGATTATCGAATAATGATTCGATATTTATACATACTGTGAAATGAT--CACCACAGTAAGTC--------------- TACATGTCAAGCA---CTTTGCGTTGCTGTATCTCATTT----------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------AATCCTCACAACAAGCCCAT---G AGGTAGATACT >Manis_pentadactyla TCCAGCACTGTGCCTGTCACATAATATGTGCTTGAATAGCTAAATAAA---TATGTGTCAAGGT---TAAAAATTCAGGT TTTT------------------------TTTCGAGATATAACTGACATAA---TATTACATTAGTTTCAGATGTACAAC- -------------ATAATTACTTGATATTTGTATCTACTGTGAAATGATACCACCATAGTAAGTC--------------- TATGTGTCAAACA---TTTTGTG-TGCAGTATCTCATTT----------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------AATCCTCACACCAACCCTAT---G AGATAAACAGT >Equus_caballus TTCAGCACTGTGCCTGCCACATAGTAGATGCTTGAATCATTGAGTGAA---TATGTGTCAAACA---TTTGTATATATAT TT--------------------------TATTGAGATATAATTGACATAG------------AGTTTCAGGTGTACAAT- -------------ACAATGGTTCAGTATTTGTATACATTGCAAAATGAT--CACCACAACAAGTC--------------- TATGTATCAAGCA---TTTTGCA-TGCAGTACCTCATTT----------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------AATCTTTATAACAACGCTAT---G AGTCAGATACT >Ceratotherium_simum TTCAGCACGGTGCCTGTCACATAGTAGGTGCTTGAATAATGGAAAGAA---TACGTGTCAAACA---TTTATATATATAT TT--------------------------TATTGAGATAGAATTGATGTAT-ACCATTATATTAATTTCAGATGTACAAT- -------------ACAA--ATTCAATATTTGTATATATTGCAAAATGAT--TACCGCAATAAGTC--------------- TACGTATCAAGCA---TTTTGCA-TGCAGTATCTCATTT----------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------CATCTTCACAACAACCCTAT---G AGGCAGATACT >Sus_scrofa GCCAGCACTGCACCCATTACATAGTAGGTGCTTGAATAACTGAACAAG---TACGTGCTAAGCC---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------TTTTGCA-TGCAGTATCTCCTTT----------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------AACCCTCACCACAACCCTAT---G AGGTACATACT >Tursiops_truncatus GCCAGCACTGTGCCCATCAAATGCCAGGTGCTTGAAGACCTGAATGAA---TATGTGCTAAGCA---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------TTTTTCA-TGCAGTGTCTCTTTC----------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------CACCTTCACCACAGACCTAT---G AGGTACATATT >Myotis_myotis TCCAGCTTTGTGGCCATCACACAGTAAGTGCTTGAATCACTGAGTGAA---TATGTGCTAAGCA---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------TTTTGCA-TGCAGTATCTCATTT----------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------AATCCTTACAGCAACCCTATAAAA AAGCACATTGT >Rousettus_aegyptiacus CCCAGCTCTGTGCCTATCACATAGTAAGTGCTTAAGTAACTGAACAAA---TATGTGTTAAATA---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------TTTTGTA-TGTA--------TTT----------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------AATCCTCACAACAACCCTAT---G AGGCACATGCC >Condylura_cristata CCCAGCACAGAGTGGGTTACATAGTAAGTGCTTAAATAACGTAATGGG---CAGATGTCAAAGA---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------TTTTGCA---CAGTGTCTCATTT----------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------GATCCTTACAACAGCCCTCT---G AAATA-ATGCT >Uropsilus_gracilis TCCAGCATTGTGCCTGTT-CATAAT-------------ACTGAGTGAA---TAGGTGTCAAGCA---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------TTTTGCA---CAGTGTCTCATTT----------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------AACCCTTACAACAACCCTCT---G AAGTA-ATGCT >Homo_sapiens TCCAGCACTGTGCCTGTTGCAAAGTAGGTGCTTGAATAACTGAATGAA---TAAGTGTCAAGCA---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------TTCTGCA-TGTAATATCT---------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------CTACAACCCTGT---G AGGTAGGCACT Horse86_LINE >L1MAB_EC -------------------------------------------------------------------------------T ATCAAATCATTATGTTGTA--CACCTTAAACATAATACAATGTTATATGTCAATTAT---ATCTCAAT---AAAACTGAA AAAAAAAAA------------------------------------------------------------------- >Equus_caballus AGCC---AAAATGTGTTGAAAA-TCTATCTACCTGTTTCTGA--------GTAACAGTAAATC---AAG-GCAAAT---- -------C---ATATTGTA--CACCTGAAAC-TAATATAAACTTATGTGTCAATTGTCAAATCTCAATACAAAGTTTTTC TTAA--------ATAACACAAT---TTT-ATTTGTTGTATAAGAAGTGCTGTCATGGAATACTATGGGCTACTTTA >Ceratotherium_simum AGCC---AAAATGTGTTAAAAA-TCAATCTACCTGTTTCTGA--------GTAACAGTAAATC---AAA-TCAAAT---- -------C---ATATCGTA--CACCTGAAAC-TAATATGATCTTATATGTCAATTAT---ATCTAAAT---AAATTTTTT T-----------AAAA-ATAAA---ACA-ATTTGTCAGATAAAAGGTGCTGTCATGGAATACTATGCGCTACTTTA >Myotis_myotis NNNNNNNNNNNNNNNNNNNNNNNCCTATCTACCTCTTTTTGA-TGATGCCATAACAGCAACTC---AGA-TGGATT---- -------CATCATATTGTACACATCTGAAAC-TAAAATAGTATTATATGTCAACTGT---ATCTCAAT---AACCTT--- ------------AAA--ACAAT---TTTTATGTCTCGTAT--GAGACGCTATCATGGAATACTATGGGCTACTCTG >Rousettus_aegyptiacus TGCT-TTAAAATGTGTTGAAAT-TCTATCTACCTGATTTTGAATGAT---GTAACAGTAAGTC---AAA-TTGAAT---- -------CGTCATGTTGCATTCACCTGAAAC-TAAAATAATATTATATATCAGCTAT---ATCTCAAT---AAATTTTTT TAA---------AAAA-ATAAT---TTT-ATTTCTTCAAT--GTGATGCTATTACAGAATATTATGGGCTACTCTA >Canis_familiaris AACCTCAAAAATATTTCAAAA-----ATCTGTGTGTTTTTGCGTGATATTGTAACGGTAAATC---AAAACCTAAT---- -------------------------------------------------------------------------------- -------------------------TTT-ATCTCTTGGATAAGAGATGTTATTATGAAACACTATGAATTACTCTG >Felis_catus AACC-TCAAAATATGTCAGAA-----ATCTGTGTGGGTCTGAGTGAT---GTTACAGTGAATC---AAAACTTAAT---- -------------------------------------------------------------------------------- -------------------------TTTTATCTATTGGGTAAGAGATGTTATTTTGGAACACTTTGGGCTACTCTG >Manis_pentadactyla AGTCTCAAAAATGTATTGAAA-----ATCTACCTGCTTTTGAGTGAAGTTGTAACAGTAAATC---AAACCTTAAT---- -------------------------------------------------------------------------------- -------------------------TTT-ATTTCTTGTTTAAGAGATGCTATCCTGGAATA---TGGGCTATTCTA >Sus_scrofa AGTCCCCCAAACGTATGGAAA----------------CTTGAGTGAT---GTAATGGTACATC---AGATTTTAAT---- -------------------------------------------------------------------------------- -------------------------TTG-ACTTACTGGATGAGAGATGCTACCATGGAATGTGATGGAATACTCTC >Tursiops_truncatus AGCCTCAAAAATGTGTTGAAA----------------CTTGAGTGATGTTGTAACAGTACATC---AAACTTTAAT---- -------------------------------------------------------------------------------- -------------------------TTT-ATTTCTTGGCTAAGAAATGCTACCATGGCATATGATGGGCTACTCTA >Condylura_cristata AATTTCCAAGAGGGACTGAAAAATCTACCTTCCTGTTTTTGAGTGATTAAGTAACAGTTAATC---AAAATTTAAT---- -------------------------------------------------------------------------------- -------------------------ATT-ATCTATTGGTTAGGAGATGCAGTGGTGTAATTATGAGGATTACTCTG >Uropsilus_gracilis AGTCTTCAAGGAAGGTCAAACA-TCTATTTACCTGTTTTTGAGTGATATCCTAACAGTTAATC---AAAACTTAAT---- -------------------------------------------------------------------------------- -------------------------AGT-ATCTGTTGGTTAACAGATGCTATCATGGAATA-TATGGACTACACTC >Oryctolagus_cuniculus AGCC-ACAAAATATATTAAAA--TATATCTCCATGTTTATGAGTGATATCATAACA-CACATC---AAAACCCAAT---- -------------------------------------------------------------------------------- -------------------------TGT-ACTCACTGGATAAGAGATGC--------------------------- Horse90_LINE >L1MA9_3END -------------------------------------------------------------------------------- --TTCTGGGTATATATCCAAAGGAAATGAAA-TCAGTATCTCGAAGAGATATCTGCACTCCCATGTTCATTGCAGCATTA TTCACAATAGCCAAGATATGGAANCAACCTAAGTGTCCATCGACGGATGAATGGATAAAGAAAATGTGGTATATAT---- -------------------------------------------------------------------------------- --------------------------ACACAATGGAATATTATTCAGCCTTAAAAAAGAAGGAAATCCTGCCATTTGTGA CAACATGGATGAACCTGGAGGACATTATGCTAAGTGAAATAAGCCAGGCACAGAAAGACAAATACTGCATGATCTCACTT ATATGTGGAATCTAAAAAAGTCAAA-------------------CTCATAGAAGCAGAGAGTAGAATGGTGGTTGCCAGG GGCTGGGGGGTGGGGGAAATGGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAG ATCTAATGTACAGCATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGT GTTCTCACCACACACAAAAAAATGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCAC AATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAG CTGGAAAAA----------------------------------------------------------------------- ----------------------------- >Equus_caballus AAGGTGCCTTAGGGCCTCTCCTGCCTCC--TTTTCCTAAAGATGCGTTTTATCCACTGATG---AAAAATGGACTCAAT- ----------AT--ATCCAAAGGAAATAAAA-ATAGGATATCAAAGGGATACATGCACTCCCGTGTTTATTGCAGCATTA TTCACAATATTCAAGATCTGGAAACAACCTAAGTGTTTTCCAACAGATGAATGGACA---AAGATGTGGTATATAT---- --------------------------------------ATGTATATACGTATACGTAT-------GTGTATATGT----- --------------------------GCACAATGGAATATTATTCAGCCATGAGAAAGAAGGAAATCCTGCCATTTGTAA TACCATGAATGGACCTTGAGGGCATCATGCTAAGTGAGATAAGTCAAACAGAGAAAGACAAATACTGTATAATATCCCTT ATATGTGGAATCTTAAAAAAAAAAAAAAAAAGA--------GAACTAGAAAAAGCAGAGAATGGAATGGTGGTTACCAAA GATTAGGG-GTGGGGAAATGGGAGAGATTTTGTTT-AAGGGTACCTACTTGCAACTA-GCAGA-TAAATAAATCCTGGAG ATCTAGTCCACAGCACAGGGATTACAGACAACAAAACTGTATT---------AAACTGGCTAAGAGAGTAGATCTTAATT GTTGCCAC--CACTAGAAGAAATGATAATTATATGACACAATAGAGGTGTTAGCTGATGCTACGATGGCAATCATATTGC TA--TATAAATGTATCAAAGCAATATGTTGTACTCCTTAAACATACACAA-TATTATGTGTCAATTGTATCTCAATAAA- ------------AAA--TGGACTCAAT---TTAAAG---CAAAGCAAATTTAATAAAAATTCAAATGGGTTG-TA----- -TTTTTTT-------TTGGTGGAAGTTGA >Ceratotherium_simum AAGGTGCTGTAGGACCTCTCCTGCCTCC--TTTTCCCAAAGGCAAATTTTATCTACTGATA---AAAAATAGACTCACT- ----------AC--ATCCAAAGGAAATAAAA-ACAGAATATCAAAGAGATATCTGCACTCCCACGGTTATTGCAACATTA TTCACAATACCCAAGTTATGCAAACAACTTAAGTGTTTGACAACAGATGAATGGATA---AAGATGTGGTATATAT---- --------------------------------------ATGTATACATGTGTATGTAT---GTGTGTATATATGTGTGTG CGTGTAT-ATATATATATACACGCACACACAATGGAATACTATTCAGGCATGAGAAGGTAGGAAATCCTGC-------AA TACCATGGATGGACCTTGAGGTCATCATACTAAGTGGGATAAGTCAGACAGAGAAAGACAAATACTGTATGATATCACTT ATACATGGAATCTAAAAAAAAAAAAAAAGGAAAAAAACCCTGAACTTGAAAAAACAGAGAGTGGACTGGTGGTTACCAAA GGCTGGG--GTGGGGGAATGGGAAAGATTTTATTT-AAGGGTACATACTTGCAACCA-GCAGA-TAAATAAATCCTGGAG ATCTAGTGCACGGTACAGGGATTACAGACAACAAAACTGTACT---------AAACTTGCTAAGAGAGTAGATCTTAATT GTTCCCAC--CACTAGAAGAAATGATAATTATCTGACACAATAGAGTTGTTAGCTGATGCTACAATGGCAATCATATTGC AA--TATAAATGTATCAAATCAATATGTTGTACACCTTAAACTTACACAA-TGTTATATGTCAATTATGTCTCAATAAA- ------------AAAATTGAACTCAAT---TTAAAA---CAAAGCAAATTTAATATAAATTTAAAAGGGTTG-TA----- -TTTTTTT--------TGGTGGACCTTGA >Condylura_cristata AAGG-----------------TAGCTACACATTTTCTAAAGACACATT-TATCCTCTGTTG---AAAAATGGACTCTAT- ----------ATA-ATCCAAAGGAAATAAAACCCAGGATATTGAGGAGATATATGCATTCCCATGTTCACTGTAACATTA TTCATAACAGCCGAGATATAGAAACAACCTAAGTATCTGTCAATGGATAAATGAATATAGAAGATATGATATATATATAT ATATACACACACACACACACACGTTATGCACACAATCTGTGTATACATACATACATATAAAATATGTGTATATATATTTA TAT-----ATATACACATACACACAACTATAATAAAATATTATTCAGCTAGGTAAAA----GAAATCCTTCAACTTGTAA TAACTTAGATCAACCTTGAGAACATTATCCTGAATGAGATAAGTCAAACAAGGAAAG-CTAGTATTTCATGATATTATTT CTATGTGGAATCTAAACAAGAAAAACAACAAAA----------ACAACAAACAACATTGAAG-GAATCGT-GTTAGCCAA GATTGGAGTGCAGAG-AATGGGATAGCTGCTGTTT-GAGAGTATATGCTTACAA-TA-GTTGATTAAAAAAATCCTGTAG ATTTAACACACCGTACAAGGGTTACAGACAACAAAACTCTATTATAAACATTGAACTTGCTAAGAGACTACAACTTAATT ACCCCCAT--TTCTAGAAGAAATTATAATTATTTGATGAGCTAGAGTTGTTAGCTAATGGTACCATGGCAATCTTATTGC AA--TATAACTGGATTAAATTGATATGTCATGCACCTTAGAAGCATACAA-TGTTATATATTAATTATAACTTAATTTC- ------------AAAAGTGGACTCAGC---TTAAAA-------GCAAATTTCATCCATATTCAAT--GGTTA-TCTATAT ATTT-----------TTGGTGGAACTTGA >Scalopus_aquaticus AAGG-----------------TGCCTCC--TTTT-CTAACGGCACATTTTATCCTCTGATG---AAAAATGGACTCAAT- ----------AAA-ATAAAAAAGAAATAAAAACCAGGCTATTGGAGAGATATATGCATTCCCATGTTCATTGCAACAATA TTCACAATAGCCAAGATACGGAAATAACCTAAGTATCTGTCAATGGATAAATGGCTATAGAAGATATGCTATATAT---- --------ACATACACAGACAATGTATACACACACAC-ATATATACACACAAACATATATCATATGAATATATACACACA CATATGTAATATATGTATATATACAAATGCAGTAGCATATTATTCAGCCAGGTGAAA----GAAATCCTTCTACTTGTGA TAACATAGATCAAACTTGAGGACATTATGCTGAAAGAT---AGTCAAACAGGGAAAG-CAAATATTTCATGATATCATTT ATATGTGGAATCTAAAAATAATAAA------------------------AAAAACATGGAAT-GAATGGT-ATTATCAAA GGTTGGGGGGCAGGG-AATGGGATAGTTGGTGCTT-AAGAGTATATGCTTGCAAGTA-GTTGATAAAAAAAATCCTGTAG ATTTAATACATAGTGCAAGGATTACAGACAACAAAACTCTATTATAGACACTAACCTTGCTAAGAGACTACATCTTAATT GTTCTTAT--TACTAGAAGGAATTATAATTATTTGATGAGATAGAGTTGTTAGCTAAC------ATTGCAATTTTATTGC AG--TATAACTGGATCAAATTGATGTGTCATGCACCTTAAAAGTACACAA-TGCTATATATTAGTGATATATCAATTTT- ------------AAAAGTGGATTCAAA----------------GCAAATTTCATCAATATTCAAATGGTTTTATTTATTT ATTTATTTA------TGGGTGGAATTTGG >Canis_familiaris AAGGTGCTGTAGGGCCCCTCCTG-CTCT--TTGTGCTCAAGGCACATTATATCCTTGGCTG------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------AC--ATGGACTCAAT---TTAACT---CGAAGAAAATCTAAT-CAAATCCAACCACGTTT-TCG---- -TTTGTTTGTTTTGTGTTGCGAATCTTGA >Felis_catus AAGGTGCTGCGGGGCCTCCCCTG-CTCT--TTTTCCTTAAGGCGCATTTTATCCCGTGTTG------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------CA--CCGGACTCCAT---TTAAAG---CAAAGAAAATTTAAT-CAACTCCGAACAGGTT--------- -TTTGTTTGTTTTGTTCTGCGGAACTTGA >Manis_javanica AAGGTGCTGTAGGGCCTCTCCTACCTTC--TTTTCTTAAAGGCACATTTTATCCTTTGGTG------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------AAAAATGGACTCAAT---TTAAAGT--AAAGAAA-ATTTAAT-CAAATCCAAACAGGTTT-TT----- -TTTTTTT-----------TGGAAATTGA >Sus_scrofa AGGG--------TCCCTCTTCTACTTCC--TCGT--------CATATTTTAGCTCCTGATG------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------AAAAACAAAATCAAT---TTAAAG---TGAAGAAAATTTAAT-CAAATCCAAACAGGGAC-TTTGGGG ATTTTTCTTTTGCTTTGGGTGGAACTTGA >Bos_taurus AAGG--------TGCCTCTCCTAGTTCC--TTTTCTTAAAAGCATATTTTATCTTTTGATG------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------AAAAACAAAGTCAGT---CTAAAGTAATAAAAAAAAATTAAC-CAAATCCAAGCAGACTT-TTTGTTT GCTTGTTT-------TTGGTAGAAATTGA >Myotis_myotis AAGATGCCCAGGGGCCTCTCCTGACTCC--TTCTCCTAAAGGTATATTTCATCCTCTGATA------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------AAAAATGGACTCAAT---TTAAAA---CAAAGGAAATTTAAT-CAGATCTCAACAGTTTA-TT----- -TTT----------------GGAACTTAA >Rousettus_aegyptiacus AAGTTGCTGCAGGGTTGCTCCTGCCTCT--TTTTCCTAAAGGCATGTTTCATTCTCTGATG------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------AAAAACGAACTCAAT---TAAAAA---CAAAGGAAATTTAAT-CAAATCTAAACAGTTTT-TT----- -TTT------------------AACTCCA >Homo_sapiens AAGGTGCCATAGGGCCTCCTCTGCTTCC--TTTTCCTAATGCTGCATTTCATCTTCTGATG------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------AAAAATGAATTTAAT---TTAAAG---CAAAGCAAATTTAATAAAAATCCAGACAGGTAT-TT----- -TTTTTTTATTTGTTTTGGTGGAACTTGA Horse92_LINE >L1MAB_EC -----------------------------------------------------------------------------AAA TCATTATGTTGTACACCTTAAACATAATACAATGTTATATGTCAATTATATCTCAA---------TAAAACTGAAAAAAA AAAA---------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------- >Canis_familiaris ATGGAC-----AGGCTGATTATT---CCACAAAATGCTTTTT-TTTTTATTTCTCAT---AAAAACATATTACC------ -------GTCGTATGCC-CAAAAATAATACAATGTTGTGTGTCAACTATATGTCGA----TTTTTTAAAATTGCAGTAAG AAGAAGAAAAC---CAAA-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------CCACATTATT---CACAGATAGGCA---CAGGAGACC-------------GA GTCTACTGCA-GCTC >Felis_catus GCAGGA-----GGACTGAATATTCTTCCGCAAACTGCTTATT-TTTTTATTT-TGAT---AAAAACACGTTACT------ -------GTTGTACGCC-TAAAAATAATACGATGCTCTGTGTTGATTGTATCTCAATTTTTTTTTTTTAGTTGCAGTAAG AAGAAGAAAGC---AGGA-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------CCACATTATT---CGCAGGCAGGCA---TGGGATGACAGGGCTCAATCTAGA GTCTATTCCA-GCTC >Manis_pentadactyla ACAGAA-----TGACTGCGTATTCTTCTGCAAACAGA------TTCTTATTT-TTAC---AAAAA-ACCTTAAT------ -------GTTGTCCACC-TAAA---AATATAATGTTATACATCAATA--ATCTCAA-----TTTTAAAACTTGTAGTAAA AAGGAGGGGAA---AAAG-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------CCACATTATT---CACAGGTAGGCAGGATGAGAAAACAGAACTCAATCCAGA GTCTGTTCAA-ACTC >Equus_caballus ACAGAA-----TGACTGACTACTCTACTGCAAACAGCCCATTCTTTTTATTT-TTAT---AACAACACATTCAT------ -------GTTGCACACC-TAAAAATAATACAATGTT--------ATTATATCTCAA-----TAAAAAAAACTGGAATAAG GAGGAAA-------AAAA-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------CCACACTACT---CACAGGTGGGCAACAAAGACT-------CTCAACCTAGA GCCTACTGAA-ATTT >Ceratotherium_simum ACAGAA-----CGACGGATTATTCTCCCGCAAACTGCTTATT-TTTTTATTT-TTAT---CACA---CATTAAT------ -------GTTGTACACC-TAAAAATAAT---ATGTTA----------ATATATCAG------TAAAAAAATTGTAGTAAG TAAAAAAA------AAAA-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------CCACATTATT---CACAGGTAGGCAGCATAGACT-------CTCAATCTAGA GTCTGTTGAA-ATTT >Sus_scrofa ACGGAA-----TGACTGGCCTTTCTTCTGCAAACCGCTTATT-TGTTTATGC-TTAT----------------------- -------------------------------------------------------------------------------- --------------GAAA-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------ACACATCATT---CACAGGTCAGCAGCATAAGATGACAGACCTCAACCTACA GTCTGTTCAG-ATGC >Tursiops_truncatus ACGGAA---------TGGTTATTCTTCTGCAAACTGA---------TTATTT-TTAT----------------------- -------------------------------------------------------------------------------- --------------GAAA-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------ACACATTATT---CACAGGTAGACAGAGTAAGATGACAAAACTCAACCTAGA GTCTCTTCAAGATTC >Myotis_myotis ACAGAA-----TGACTGATTATTCTTCTGCAAATTGCTGACT-TTTTTATTT-TTAT----------------------- -------------------------------------------------------------------------------- --------------GAAA-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------ACACATTATT---CACAGGTAGACAGCATAGGATGGTAGAACTCACCCTAGA ATCCATTCAA-ATTC >Rousettus_aegyptiacus ACAGAA-----TGACTGATTACTCCTCTGCAAATTGTTTATTCCTTTTATTT-TTAT----------------------- -------------------------------------------------------------------------------- --------------AAAA-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------A--CATTATT---CACAGGTAGCCAGCATAGGATGCCAGAACTCAAACTAGA GTCTGTTCAA-ATTC >Condylura_cristata ACAGAATATGCTAACTGCTCGTTCTCCTGCAGGTGGC---------TTATTT-CTAT----------------------- -------------------------------------------------------------------------------- --------------GAAA-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------ACACCCGATT---CACAGGTAGAGAGCATGCGATGACAGAAGTCA----ACA GTCTCTTCAA-ATTC >Uropsilus_gracilis ATAGAA-----CTACTGGTTATTCTTCTGCAAGTTGCTTATTT-----CTTT-CGAT----------------------- -------------------------------------------------------------------------------- --------------GAAA-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------ACACTTTATT---CACAGGTAGACAGCATGGGATGACAGAACTCA----AGA GTCTCTTCAA-GCTC >Homo_sapiens ACAAAA-----GGATTGATAATTCTTCTGCAAACTGCTTTTTAAACA-ATTT-TTAT----------------------- -------------------------------------------------------------------------------- --------------GTAAGGCCTGGCACTGTGGCTCATGCCTGTAATCCCAGTGCTTTGGGAGGCCGAGGCAGGTGGATC ACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTAGTAAAAATACAAAAATTAGCCAGG CGTGGTGGTGCGCACCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAAGAGAATCACTTAAACCCAGGAGGCAGAGGTTG CAGTGAGCTGAGATCACACCATTGCGCTCCAGCCTGGGTGACAGAACAAGACTCTATCTCAAAAAAAAAAAAAAAAAAAA ATATATATATATATATATATATATGTAAACATATTATT---CATAGAAAGGCAGCATAGAAGGACAGAATTCAACCTACG GTCTGCTCAA-ATTC Horse95_LINE >L1MAB_EC_ -------------------------------------------------------------------------------- ----ATGGTGACTATAGTTAATAATACTGTATTGTATATTTGAAAGTTGCTAAGAGAGTAGATCTTAAAAGTTCTCATCA CAMAAACAAAAAAAAAATTTGTAACTATGTGAGGTGATGGATGTGTTAATTAACTTCATTGTGGTAATCATTTCAC---- AATATATACATATATCAAATCATTATGTTGTACACCTTAAACATAATACAATGTTATATGTCAATTATATCTCAATAAAA CTG------------------------AAAAAA----------------------------------------------- ------------------------ >Equus_caballus AATGCACTGGAACAGGGCTACTTCCC-----------CTCAGAGGGGTTTGAGAATCTGAT---AAAAGCTTGAACTC-T ---TACAGTGAATGTAGACAACTATATTGTACTATAATCATCAAACCTGCTAAGAGACTAGAACTTAATTATTCCAACCA ATAAAAAGAAAGCA-------TACCTAGGTACTGTGATAGAGGTGCCAAGTATTGCTACAATTGCAGTCATATTACAAAA AATATATAAATGTATCAAATTAACTTATTGCACATCTTAAAT-TTACACAATGATGTGTGTCAAATATATTTGATTAAAA AAA------------TCAT--------GAAAAA---AAAAGCTTGAACTCT---CTCCCCTGAAATGCGCAGACATCCAG TATTCAAATATAGTTTCAAAGAAG >Ceratotherium_simum AATGCTCTGGAACAGGGCTTCTTCCT-----------CTCAAAGATGTTTGAGAATCTGAT---AAAAGCTTGAACTC-T ---TATAATGAATGTAGACAACTATATTGTGCTATAATCATCAAACCTGCTAAGAGACTAGATCTTAATTATTCCAACCA CTAAAAGGAAAGGA-------TAATTATGCACTGTGATAGAGGTGCTAAATATTGCTACAATTGTAACCATACTACAAAA AATATACGAATATATCAAATTAATTTATTGTACATCTTAAAT-TTACACAATGTTACGTGTCAAATATATTCAATAAAAA GAA---------ATACCAT--------GGAAAA---AAAGACTTGAACTCT---CTCCCCTGAAATGCGCAGACATCCAG TGTTCAAATACAGTTTCAAAGAGG >Myotis_myotis AATGCTCTGGAACAGTGCTTCTTCCC-----------CTCAGAAATGCTTGAGAACCTGAG---AAAAGCTTGAACTCAT ---TATAATGAATATAAACCACTATATTGAACTATACTCATCAAACCTGCTAAGAAACTAAAACTTAATTATTCCAGCTG CTAAAA-GAAAGCA-------TAAGTATATAATGTGATGGAGTTGCTAGATGTCTCTACAATGGCAATCATAC------- AGTAT-TAAATGTATAAAATTAAC--ATTGTACACCTTAAAT-TTACACAATGTTATATGTCAAATATATCCATTAAAAA ACAACAAC----ATATCATTGAAAGAAAAAAAA---AAAGGCTTGAACTCT---CTCCCCTGAAATGCACAGACATC--- ----------CAGTTTCAAAGGGG >Rousettus_aegyptiacus AATGCTCTAGAACAGTGCTTCTTTCC-----------CTCAGATATGCTTGAGAATCTGAT---AAAAGCTTAAACTC-T ---TGTAGTGAATATAAACTAGTGTATTGTATTATAATCAGCAACCCTTCTAAGAGACTAGAACTTAATTATTCCAATCA CTAAAA-GAAAGCA-------GAATTATGTAATATGATGGAGGTTCTAAATATCATTACAATGGTAATCATACTAC---- AATAT-TAAACATATCAAATTAACATATTGTACACCTTAAAT-TTATACAATGTTTTATGTCAAATATATCTAATAAAAT ACACACACACAAATATTACTGAAG---GGGAAA---AAAAGCTGGAACTCT---CTCCCCTGAAATGCACAGAAATTCAA TGTTCAGATACAGCTTCAAAGGGG >Canis_familiaris AATACCCTAGAACAGTGTTTCTTCCCC----------CTCAGATATGTTTGAGAATTTGAT------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------AAAAGCTTGAACTCT---CTCCCCTGAAATGCGCCAATGTCTGG TGTTCAAATACAGTCCCAAAGGGC >Felis_catus AATGCTCTGGAATAGCATTTCTTACC-----------CTCAGATATGTTTGAGAATTTGAT------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------AAAAGCTTGAACTGT---CTCCTCTGAAATGCACAGATGTCTAG TGCTCAAATACAGTCTCAAAGCGG >Manis_pentadactyla AATGTTCTAGAACAGTGCTTCTTCCC-----------CTCAGACATGTTTGAG--TCTCAT------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------AAAAGCTTGCACTCT---CTCTGCTGAAATGCACAGTTATCCAG CGTTCAAATA---TCTCAAAGGCG >Sus_scrofa AATGCTCTGGCACAGTGCTGCTTCTC-----------CTCAGAGATTTTTGAGAATCTGAT------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------CAAAGCCTGAACTCT---CTCCTCTGAAATGCACAGACACTCAG TGTTCAAAGAAAGTCACACAGGGG >Bos_taurus AATGCTCTGGAACAGCACTGCTTCCC-----------CTCAGTCATGTTTGAAAATAGGAT------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------CAAGGCTTGAATTCT---CTCCCCTGAAATGCACAGACACCCAG TGTTCACATAAAGTCACAAAGGGG >Condylura_cristata AATGATCTAGAACTGTGTCTGTTCAC-----------CTCATATATGTTTGAGAATCTGCT------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------TACAGCTTGAATTCT---CTGCCCTGAAAGGCACAGACATCATG TGTTCAAATACAGTT-TGAAGGGG >Erinaceus_europaeus AATGTTCTAGAACAGTGGTTCTCACCCTCC-------CTCAGAATGGTCTGAGAATAGGAT------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------AAAAACCTGAA-TCT---TGCTCCTGAAACGCACAAGTATCCAG TGGTCAAATACAGTTGCAAAAAAA >Homo_sapiens AATGGTCCAGAACAGTGCCTCTTACCCTTTCCTGTATCTCAGATATGTGTGAGAATCTGAT------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------AAAAGCTTGAACTGT---CTCCCCCAAAATAGACACACATCCAT TGTCCAAATACAGGTTCAAAGGGG Horse98_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------TTTTTCCAGCTTTATTGAG GTATAATTGAC---------AAATAAAAATTGTA----TATATTTAAGGTGTACAACGT-GATGTTTTGATATACGTATA CATTGTGAAATGATTACCACAA---------------------------------------------------------- --------------------------- >Canis_familiaris TTTAATCCTAAAGTATATACTACCCAGTTTAAAGCAAATCATT-----CATTTTC---TATG------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------CCTCAATTCTTT------TAAA--------AGAG GTATAATTGAC---------ATGTAACAG-TATA----CTGGTTTCAAGGGTACAAAGT-AATGATTCAATATTTGTATA TACTACAAAA---------------CATGCCTCAATTCTTT----AACCTACAAAATGAGGACCCTTTGTTTCCTTGATT GCAGCCTTATC-AACA----AAGGTTA >Felis_catus TACAATCCGAAAGCATGCACCATCCGGTCTAAAGCAAGCCATTC----CATTTCC---AATG------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------CCTCAATTCTTT------T-----------TGAG GTATAACTGAC---------ATAGAACAG-TATA----CTAGTTTCAGGTGTACAAAGT-AGTGATT----ATTTCCTTA TCCTGCAAAA---------------TATGCCTCAATTCTTT----AACCTACAAAATGGGTACCTTCTCCTTCCTTGANN NNNNNNNNNNNNNNNNNNNNNNNNNNN >Manis_javanica T---ATACTAAATTATACACTACCTAGTCTAAGGCAAGTCATCA----CATTTTC---TATA------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------CCTTATTTTTT----------A--------AATT ATGTAATTGAC---------AC---ACAT-TTTA----TTAGTTTCAGGTGTACAACATAAATGATTCAACATTTTTATA AATCATGAAA---------------AATGCTTCGATTGTTT---------ACCAAATGAGT---TTGACCTTCTTTGAAT GTAGCCCTATC-AACAGTGAAAGGGTA >Equus_caballus TATAATCCTCCAGTATACACTATCCACTCTAAAGCAAGTCATTC----TATTTTC---TATG------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------CCTCAATTCTTG------------------AAAA TTGAGGTTGACAATGA----ATGTAATTGACACA----TTAGTTTCAGGTATACAATGT-AATGATTTGATACTTGTGTA TATTGTGAAA---------------TATGCCTCAATTCTCT----AATCTACAAAATGGGTAC--CCTGTTTCCTTGATT GCAGCCCTACC-AATAGT----GGATA >Ceratotherium_simum TATAATCCTAAAGTATATACTATCCAGTCTAAAGCAAGTCATTC----CATTTTC---TATG------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------CCTCAATTCTTT------TTTT--------AAAA TTGAGGTTGACAATTATTTAATGTAACTGACATAACATTAAGTTTCAGGTATACAATGT-AATGATTCGACATTTGTGTA TATTGTGAAA---------------TATGCCTCAATTCTTT----AATATACCAAACGGATACCTTCTGTTTCCTTGAAT GCAGCCCTATC-AACAGT----AGATA >Eptesicus_fuscus TATGATTCTAAAGTACACACTGCTCAGTCTAAAGCAAGTCATTCATCACACTTTC---TACACCTCAATTCTTTTTTTTT AAATATAGTTTTTATTGATTTCAGAGAGGAAGAGAAGGAGAGAGAGAGAAACAGCAATGATGAGAGAGAATCACTAACTG GTTGCCTCCTGCACGCCCCCTACTGGGGATGGAGCCAGCAACCCGGGCACGTGCCCTGACTGGGAACCAAACTGTAATAT CCTGGTTCATAGGTTGATGCTCACCCACTGAGCCAGCTAGGCTCCCCCTCAATTCTTT------TTATAAGTTG--AGGT GTAAAATTGAC---------AATTAACCT-TATA----TTAGTTTC-GGTGTACAAC----ATGATTCAGTGTTTGTACA TATTGTGAAA---------------TATG-CTC-ACTCTTT----AATCTGCAAAATGGATACCTTCTGTTTCCTTGATT GCAGCCCTATC-AACAGTGGACAGATA >Pteropus_vampyrus NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NACA------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------CCTCAGTTCTTT------TTTATTTTTAATTGAG GTATAATTGAC---------ACAT------TATA----TTAGTTTTAGTTGTACACCAT-AATGATTCAGTATTTGTATA TATTGTGAAA---------------TATTCATCAATTCTTT----AATCTACAAAATGGGTACTTTCTGTTTC-TTAATT GCAGCCCTATC--ACAGTGGAAGAATA >Sus_scrofa TCTAATCCTAAAGTATACACTACCCAGTCGAAAGCAAGTCATTC----CATTTTC------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------TATGCCTCAATCCCTT----AATCTCGAAAAT-GGTACCTTCAATTTCCTTAATT GCAGGCCTCACACACAGTGGAAGGGTA >Tursiops_truncatus TCTAACCTGAAAGTATACACTACCCAGTATAAAGCAAGTCATCC----CATTTTC------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------TATGCCTCAATTCCTT----AATCTAGAAAATGGGTACCTTCAGTTTCCTTGATT GCAGCCCTAGCAAATAGTGCAAAGATA >Condylura_cristata TTTAATCCTGAAGTTGATTCTAACCAGTCTGGTGGGTATTGTTC----CATTTCC------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------TATGCCTCAGTTTCTT----AATTTACAAAGTGGGTAC--TCTGTTTCCTTGATT GCAACCCTATC-AACAGTGGAAGGATG >Uropsilus_gracilis TTGAATCCTCACACAGACACTAACCAGCCTAATACACATCATTC----CATTTTC------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------TATGCCTCAGTTCCTT----AATTTACAAAATGAGTGC--TCTATTTCCTTGATT GCAGTCCTAGC-AACAGTGAAAGGATG >Homo_sapiens TCTAATCCTAAAGGATACACTACCCAGTTTAGAGCAAGTCATTC----CATTTTA------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------TATGTCTTAATTCCTT----AATCTACAAAATGGGTACATTTTGTTTCCCTGATT GCA------------AATACAAGGATA Horse99_LINE >L1MAB_EC -------------------------------------------------------------------------------T TTTTTTTTTTCAGTTTTATTGAGATATAATTGACATATAACATTGTATTATGTTTAAGGTGTACAACATAATGATTTGAT ATATGTATATATTGTGAAATGATTACCACAATGAAGTTAATTAACACATCCATCACCTCACATAGTTACAAATTTTTTTT TTGTTTKTGTGATGAGAACTTTTAAGATCTACTCTCTTAGCAACTTTCAAATATACAATACAGTATTATTAACTATAGTC ACCATGCTGTACATTACAT------------------------------------------------------------- -------------------------------------------------------------------------------- -----CCCCAGAACTTATTCATCTTATAACTGAAAGTTTGTACCCTTTGACCAACCTCTCCCTATTTCCCCCACC----- --CCCCAGCCTCTGGCAACCACCAATCTATTCTCTGTTTCTATGAGTTTGGTTTTT--TTTTTTTAGATTCCACATATAA GTGAGATCATGCAGTATTTGTCTTTCTCTGTCTGAC-------------------------------------------- --------------------------- >Equus_caballus TCA---TTTTCTTGGCCTCTATTTCTTTGT-TTTGCTAAATTAATTATTGT---ATATA---TTCATGGTACTTTT---- ---------------TTATTGAAGTATAATTGACTATTAACATTATCTTA-GTTTCATGTATACAATATAATGATTCACT ATTTGTATATGTTGTGAAATGATTAACACAATAAGTCTAGTTA--ACATCTG-CCCCATACATAGGTATAAAATTATTT- ---TTCTGGTGATAAAGACTTTTAAGATTTAATTTCTTAGCAATTTTCAAATACACAATATACTATTATTAACTATAGTC ACTGTGCTGTACTTTACAT------------------------------------------------------------- -------------------------------------------------------------------------------- -----CCCCATGCCTTACTTATTTTATCATTGGAAATCTGGCTCC---------CCTTTACCCATGTCGCCTGTCCTCCC AACCTCCACTTCTGACAACCACCAATCTGTTCTCCATATCTATGAGCTTGGTTTGTTATTTTTTTACATCCCACATATAA GTGAGATCATAAGGTATTTGTCT----------------TTCATGGCACTTTT---ATCTAGGAAGCAAAGGAAGAATAA CATTATAAATTTAAATAGTGCAAACTG >Ceratotherium_simum TCA---TTTTCTTGGCCTGTATTTCTTTGTGTTTGCTAAATTAATTATT-T---ATATA---TTCACAGTACTTTT---- ---------------TTACTCAAGTATAAGTGAC-TATAACATTATATTA-GTTTCAGGCGTACAATATGATGACTCAAT ATTTGTATATATTGTGAAATGATAAATACAATAAGTCTAGTTA--ACATCTG-CCTCATACGTAGGTACAAAATTATTT- ---TTATAGTGATAAGGACTTTTAAGATTTACTTTCCTAGCAACTTTCAAATATGCAATACAGTATTATTAACTATAGTT ACCATGCTGCACTTTACAT------------------------------------------------------------- -------------------------------------------------------------------------------- -----CCACACGACTTACTTATTTTATCACTGGAAGTGTGTACCT--TGGGCCACCTTCACCCATTTTGCCCATTCCCCC AACCTCTGCCTCTGGAAACCACCAATCTGTTCTCTGTATCTATGAACTTGGTTTGTT-TTTTTTTAGATTCCACATATAA ATGAGATCATAAGGTATTTGTCT----------------TTCATGGTACTTCT---NNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNN >Myotis_myotis TTA---TTTTTGTGGCTTCCAGAACTTTTCTTTTGTTAAATTAATTATTGT---ACATG---TTTATAGCACTTTT---- ----------------TATTGAGGTATAATTGCCACATAACATTGTATTA-TTTTCAGGTATACAATATAATGATTCAAT AATTGTGCATATTACAAAAAGATCAACACAATACATCTGGTTA--ACATCTATCTCCATACATAGGTA--ATATTTTTT- ---TTCTTGTAATCAAGACTTTTAAGATTTACTCTCTTCCCAAGTTTCAAATATTCAA-----------------TAGCC ACCATACTATACTTTACATCCTGTGATCTATTTATTTTATTTACTGATTTTTAGAGAGGGAAAGAGAAAGAGGTTAGGCA TTCTTGTATGTGCCCTGGCCAGGGATAGCTGAACCCTCAACCTTGGTGTATCAAGACAATGAATGCTCCCACCACCTGGG GGGACCCCCAGGACTTATTTATTTTATAACTGGATAT-TGTACCTTTGGGCCCCCTTTAACCCA--------------CC CACCACCACCTCTCACAACCAACAATGAACT---TGGCTTTTTGTTGTTGTTTTGTG-TTGTTGTTAATTTAATATGTAA GTAAGATCATATGGCATTTGTCT----------------TTCATGGCACTTTT---ACCTATGAAGCAATAGTAGAATGA CATTATAATATTAAATAGCATAAGCTA >Rousettus_aegyptiacus TCA---TTTCCTTGGCCTCTGTTTCTTTGCTTTTATTAAATTAATTAT------CCATA---TTCATGACATTTTT---- ----------------TATTGAGCTTTAATTGCCATATAACATTA------GTTTCAGGTGTGCAACATAATGAATAAAT ATCTGTACATAT---GAGAGGATAACCACAATAAACCTAGTTA--ACATCTGTCCTCATACAT-------ACATTTTTT- ---TTCTTGTAATGAGAACTTTTAAGATATGCTCTC--GGCAGCTTTCAAATATGCAATACAATATTATTAACTGTAGTC ACTATGCTGTACTTTACTT------------------------------------------------------------- -------------------------------------------------------------------------------- -----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNN----------------NNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNN >Canis_familiaris TCA---TTTTCTAGGGCTCTATTTCTT-GTTTTTGCAAATTTAATTCTTAT---GCACA---TTCATGGCACTTCT---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------ATATGAGAAGCAAAGGAAGGATGA TATTATAAATTTAAACAGTATAGGTTC >Felis_catus TCA---CTTTCTTGGCCTCTACTTCTTTGTTTTTGTGAAGTTAATTATTGT---ATGCA---TGCGTGGTACTTCT---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------GTCTATGAAGCACAGGAAGAATGA CATTATAAATTTAAGCAGTATAAACTC >Manis_pentadactyla TCA---TTTTCTTGGCCTCTATTTTTTTGTTTTTGTTCAATTCATTTTTTTTTTACATA---TTCATGGCACTTCT---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------ATCTGTGGAGCAAAGGTAGAATGA CATCATAAATTTAAATAGTATAAACTA >Sus_scrofa TCT---TTTTCTTAGCTTCTACTTATTTATTTTTG-----TTAATTATCAT---ACATA---TTCATGGCCCTTCT---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------ATCTATGAGGTAAAGGAAGAAGGA C---ATAAAGTTAAATAATATAAAATA >Bos_taurus TCC---TTTTCTTAGACTATATTGATTAGTTTTTG-----TTAATTATTAC---ACATA---CCCACAGCACTTCT---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------ATCTATGAAGCAAAGGAAGAGTGA TATTATAAATTTAAATAGTATATAATA >Condylura_cristata TCA---TTTTTCTGGCTTCTAGTCCTCT-TTTTTGTTAGTTTAATCACT-------GTA---TATATGGTACTTTT---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------TCTGT-AAGCAATGGAA-AATG- ----ACAAATTTAAATACAATATATGA >Uropsilus_gracilis TTATAAGTTTCCTGGTCCTTAGTTCTCTGTTTTTGTCAGTTCAATTAGTAT---ATGTA---TCTGTGGTACTTTT---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------TCTGTGA-GCAAAA-AAGAATGA ---CATAAATTTAAACAGTATGAGCTA >Homo_sapiens TCA----TTTCTTGGCCTTTATT--TTTGTATTTGCTGAAATAATTATTGC---ACATA---CTCATGGCAGTTTT---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------AT----GAAACAAAG-------AA TAACATAAATTCCAATAGTA-AAACTA Horse101_LINE >L1MAB_EC -------------------------------------------------------------------------------T TTTTTTTTTTCAGT------------TTTATTGAGATATAATTGACATATAACATTGTATTATGTTTAAGGTGTACAACA TAATGATTTGAT-------------------------------------------------------------------- -- >Equus_caballus GGGTAAGAATTAAATTCAAGTTTAACAGTAACTTTTGCTCTGGGCTTTAT---TTTCTTTTT-------------ATGTT TATTTGTTTTTTATTTTATT---TTATTTATTGAGATATAATTGACATACAACATTATATTAT-TGTCAGGCATACAACA TA-------------TTTCCTTGT---AAAGCCTGGTGTTATACACTTACTTTCTTAAGCAGCAAGACTAATG----GAA GT >Ceratotherium_simum GGGTAAGAATTAAATTCAGGTTTAATAGGACCTTCTGCTCTGGGCTGTAT---TTTCCTTTT---------TTGTTTGTT TATTTGTTTTTTAT------------TTTATTGAGGTAAAATTGACATACGACATTATATTAT-TCTCAGGTGTACAACA TG-------------CTTCCTTTT---AAAGCCTGCTGTCATGCACTTATTTTCTTAAGCAGCAAGATTAATT----GAA GT >Myotis_myotis GGGTATGAATTAAATTCAACTTTAGTGGTACCTTCTGCTCTAGGCTTTAT---TTTCCTTTT-----TCTTTTGTTTGTG TGTTTGTTTTTTGTTTAATTCTCTTTTTTATTGAGTTATAATTGATGCAGAACATTATATTAC-TTTCAGATGAACACCA TA-------------TTTCCTTTT---AAAGCCTGTTGTTATATGGTTGCTTTCTTATGCTTG-----CAATT----GAA AT >Rousettus_aegyptiacus GGGTAAGCATTAAGTTCAAGTTCAACAGTACCTTCTGCTCTGCGCTTTAT---TTTCCTTTT---CATTGTTGTTGTGTT TGTTTTATTTCATTTTTTTT---TTTTTTACTGAGGTATAAATG-------------TATCAG-TCGCAGTTGTGCA--- ---------------TTTCCTTTT---AAAGACTGTTGGTACATGCCTGCTTCCTCAAGCAGCAAGATGAACT----GCA AT >Canis_familiaris GGGTAAGTATTAAATTCAAGTTTAATAATACCTTCTGTTCTGGGCTTTAT---TTTTCTTTT------------------ -------------------------------------------------------------------------------- ---------------------------AAAGCC---TGTTAGACTCTTGCTTTCTTAAGCACCAAAATGAACT----GAA AT >Felis_catus GGGTAAGAATTAAAGTCAAGTTTAATAAGAACTTCTGCTCTGGGCTGTAC---TTTCCTTTT------------------ -------------------------------------------------------------------------------- ---------------------------AAAGCCTGTTGTGATACACTTGCTTTCTTAAGCACCAAAACGAACT----GAA AT >Manis_pentadactyla GGGTAAGAACTA----CAAGTTTAGTAATATCTTCTGCTCTGGGCTTTGT---TTTCCTTTT------------------ -------------------------------------------------------------------------------- ---------------------------AAAGACAGTTGTTATTTGCTTACTTTCTTAAGCAGCAAAATTAATTAACTGAG AT >Sus_scrofa GTATAA-AACTAAATTCAAGTTAAATAATGCCTTCTGCTTTGGTCTTTAT---TTCCCTTTT------------------ -------------------------------------------------------------------------------- ---------------------------AAAGTCAATTGTTATGTGTTTGCTTTCTTAAGCAGCAAGATTAATT----GAA AT >Bos_taurus GGGTAATAACTAAATTCAAATTTAATTACATCTTCTGCTCTGGGCTTTAT---TTTCCTTTT------------------ -------------------------------------------------------------------------------- ---------------------------AAAGTCCATTGTCATATGCTTGCTTTCTTAAGATGGAAGGTTAATT----TAA AT >Condylura_cristata GACTATGAATTAAAAGCAAGTTTAATAATACTTT---CTCTGATCTTTAT---TTCCCTTTT------------------ -------------------------------------------------------------------------------- ---------------------------AAAGCCCATTGTTATACACATGCTTTCTGAAGCAGCATATTTCATT----GAA GG >Erinaceus_europaeus GTATAACAATTAAATTCAAATTAAAT---ACCTTCCTCTCTGGGCTTTAT---TTTACTTTT------------------ -------------------------------------------------------------------------------- ---------------------------CAAATCTAGTGATACATACTTGTTTACTTAAAAAGCAAGATAACCT----GAA AT >Homo_sapiens GGTTAAGAATTAAATCGAAGTTTAATAGCATCTTCTGCTCTGGGCTGTAT---TTTCTATTT------------------ -------------------------------------------------------------------------------- ---------------------------AAAGTCCATTGTTATACACTTACTGTCTTAAGCAGCAATATTAACT----AAA TT Horse104_LINE >L1MAB_EC -------------------------------------------------------------------------------- ----------GGGGGGTGGGGGAAATAGGGAGAGGTTGGTCAAAGGGTACAAACTTTCAGTTATAAGATGAATAAGTTCT GGGGATGTAATGTACAGCATGGTGACTATAGTTAATAATACTGTATTGTATATTTGAAAGTTGCTAAGAGAGTAGATCTT AAAAGTTCTCATCACAMAAACAAAAAAAAAA----TTTGTAACTATGTGAGGTGATGGATGTGTTAATTAACTTCATTG- TGGTAATCA--TTTCACAATATATACATATATCAAATCATTATGTTGTACACCTTAAACATAATACAATGTTATATGTCA ATTATATCTCAATAAAA--------------------------------------------------------------- -------------------------------------------------------------------------------- ---C-----------------------------TGAAAAAAAAAAA---------------------------------- -------------------------------------------------------------------------------- ------------------- >Canis_familiaris TTAAACCCTGTGTTAGGACACTTTGTCTGCAAGTGGCAGA--------------AAGCCAACTG---AAAATA-CCTTAC TCAAAAT-----------------AGTTGAAGGGG---GTCAAAA-----------TAAGTAATCAAAT----AAGTTAT GGGGATGTAATACACAGCGTGGTGACCATAGTTAATAATACTCTGTTGCATATTTGAAAGATGC--AAAGAGTAGATCTT CAAAATCTTCATCACAAGAAAAAAAAGTAAAACCTTTTGTAACTGTGTAGAGCGACGGA--TG-TAACTAGACATATGG- TGGTGACCA--CTTTGCAAAATATATAGATATTGAGTCATTATGTTGTACACCTGAAAC-TAATATAATGTTATATGTCG GTTATACCTCAATAAAA-AAATGTTTTAAAAAAAGCCTAGACATT--GTAACCATATGATCCAGCAATTCTACTCTTAGG TATTTACCTTAGAGAATTGAAAACATATGTCCACACAAAAACAGCTAACATCATACTTAGTGGTGAAATATTGAGCACTT TCCC-----------------------------TAAAAAAAAAAAAAAAAAAAAAAAAAAAGAACAAA---AAAG-ACCT CACTC-AAAAT---AAGGAGATGATTAG------------CTTATTCATTCACTCATTCATTCAGTCT--GTAAGTTGAT AGTACTTTTTTGAGAACCT >Felis_catus TTAAACCCTATGTTAGAACACTTTGTCTACAAGTGGCATAAAAAAAGTAGCAGGAAGCCACCTG---AAAATAACCTTAA TCAAAAT----------------------ATAAAGCAAATGAAATGAAATGAA---------ATGAAAT----AAGTCAC AAGGATGCAATATACAGCATGGTGACCATACTGAATAATACCGTATTATGTATTTGAAAGATGC--AAAGAGTAGATCGT CAGATGCCTCGTTACAAAAAAATAAAAAATAAAA-CTGGTAACTGTGTATAGTGATGGA--TG-CAACTAGGCTTATAG- CGGCGATCATTTTTTGCAATGTGTAGAACTATTGAATCATGATCTTGTATACCTGAAAC-TAATAGAATGTAATATGTCA GTGATACCTCAATAAAAAAAAAAGTCTTAAAAAAGGCTAGACGTAAAGCTACCATCTGATCCAGCAATTCCATGCTTAGG TATTTACCTTAGAGAATCGAAAACAT-----------------GCTAACATCATTCTTGGCAATGAAATAGGGAGTGCTT CCCCCCCCCCACCCCCCCCCCCCCCCCCCGCCTTGCCAGAAAGC---------------------------AAAG-ACCT TACTC-AAAAT---AGGGAGGTGATTAG--------------------CTCCGTCGGTCTATCCGTCT--GAAAGCTGAC AGTACTTTACGGAGAGGCT >Manis_pentadactyla CAGAACCCTGTATTAGAATATTTCGTCTGCAAGTGGCATA--------------AAGCCAC------------------- --------------------------------------------GGCTACAAACTTCCCGTTATAAAAT----AAGTCAT GGGTATGTAATGTACCACATGGCGACTATAGTTAATAATACTGTATTGCATATTTGAAAGTTGCTAAAAGAGTAGGTTTT AAAGATCCTCATCCTACAAGAAAAATAA-------TCTGTAACTATGTATGGTGACAGA--TGTTAACCAGACTTACTA- TGGTGATCA--TTTCACAATATATACAAATATCCAATCATTATGTTGTACACCTGAATC-TAATGTAATGTTATATGTCA ATTATACCTCAATTTAAAAAAATTTTTT---TAAGGTTAAACATA--GTTACCATATGATCCAGCAGTTCCACACTTGGG TATTTACCTCAGAGAATGGAAAATAAATCTCCACACAAAAACTGTTAACATCATATTTAGTGGTGAAATACTGAGCACTT TCCC-----------------------------TAAAAAAGAAT---------------------------AAAGTATCT TACTT-AAAAT---CAGGAAGTAATTAG----------------CTCATTCATTCATTCATTCAACT---GTGAGTTGAT AACACTTTATTGATTATCT >Equus_caballus TTGAATGCTGTATCGGAACACTTTGTCTGCAAGTGGCATA--------------AAGCCAACTG---AAAATA------C TTAAAGT-----------------ATTGGAAGAGG---GTCAAAAGGTACAAACTTCCTGTTACAAAATA---AAGTCCT GGGGGTGTAATGTACAGCATAGTGACTATAGTTAATAATGCTTT-TTGCGTATTTGAAAGTTGCTAAGAGAGTTGATCTT AAAAGTCCTCATCATAAGAAAAAAA----------CCTCTAACTATGTATGGTGATGGG--TATTAACTAGACTTGTTAT TGGTGATTA--TTTTGCAATATATACAAATACTGAATCATTGTGTTACACACCTGAAAC-TAATATAACGTTATATGTCA GTTGTACCTCAATAAAAAAAATTTTTTT---AGAGGTTAAACATAAAGTTACCATATGATCTGGCGATTCCACTCTTAGG TATTTACCTTAGAGAATTGAAAACATATGTCCACACAAAAACAGGTAATCTTATACTTAGTGGTGAAATATTGAGTGCTT TCCC-----------------------------TAAAAAAAAA----------------------------AAAATACTT TCCTC-AAAAT---AGAGAAGTGATTAG--------CTCATTCATTTATTCATTTATTCATTCAGTCT--GTAAATTGAC AACACTTTATTAAGTACAT >Ceratotherium_simum CTGAACGCTGTATTAGAACACTTTGTCTGCAAGTGGCATA--------------AAGCCAACTG---AAAATA--CCTAC TCCAAGT------------------TTTGAAGAGG---GTCAAAAGGTACAAACTTCCAGTTACAAAATAAATAAGTCAT GGGGATGTAATGTACAGCATGGTGACCATAGTTAATAATATTGTATTACTTATTTGCAAGTTGCTAAAAGAGTAGATCTT AAAAGTCCTCCTCACAAGAAAAATAAAAAAT----TTTGTAACTATGTACGATGACAGA--TGTTAACTAGATTTATTG- TGGTGATTA--TTTTGCAGTACACACAAATATCAAATCATTATGTTGTACACCTGAAAC---ATACAATGTTATATGTCA ATTACACCTCAATAAAAAAAATTTTTTT---TTAAGTTAAACATAAAGTTACCATATGATCCAGCAATTCCACTCTTAGG TTGTTACCTTAGAGAATTGAAAACATTTGTCCACAC-AAAACATGTAACATCAGACTTAGTGGTGATATAGTGAGCGTTT TCCC-----------------------------TAAAAAAAG-----------------------------GAAATACCT TTCTC-AAAAT---AGGGAAGTGATTAG----------------CTCATTCATTTATTCATTCAGTCT--ATAAATTGAC AACACTTTTTTGAGTACCT >Sus_scrofa TTGAATGCTGTATGAAGACACT--GTCTACAAGGGGCATA--------------AAGCCGACTG---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------AAAATCCCT TACTC-AGAAC---AGGGAAGCCATTAG------------TTCATTCCCTTATTCATTCGTTCAGTCTTAGCAAGACGAC AGGACTTC---GAGACCCC >Bos_taurus TTGAACACTGTATTAGGACTCTCTGTCTACAAGTGGCATC--------------AAGTCAAATG---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------AAAATGCCT TATTC-ATAAT---AGGGAAGTGATTAC--------------------TTCATTCATTCATTCAGTCA--GTAAGTTGAC AACACTTT---GAGTCTCT >Myotis_myotis TTGAATGCTGTATTAGAACACT--GTCTGAAAGTGGCATT--------------AAGCCAACTG---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------AAAATGCTT GACTC-AAAAT---GGGGAAGTGATTAGCTCGCTCACTCATTCATTCATTCATTCATTCATTCAATCA--GTAAGCTGAC AACACGTTATCGAGTACCT >Rousettus_aegyptiacus TTGAACGTCGTATTAGGGTACTTTGTCTGCAAGTGGCATA--------------AAGCCAACTG---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------AAAATACCT TACTC-AAACT---AGGGAAGGGATTCG----------------TTCATTCATTCATTCATTCAATCG--GCAA------ ----CTTTATTGAATACCT >Condylura_cristata TTGTACACTGTACTAGTTATATACATCGACACATGGTATA--------------AAGCCCATCC---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------AAGCTGGCT TACTC-AGGAT---AGGGAAGTGATCAG--------CTGATTCATTCACTCACTCATTCTTTCTTTCT--GTCAGTTG-- AATCCTTTATTGAAAACCC >Scalopus_aquaticus TTGAACATTGTACTAGTATA---TATCGACAAGTGGCATA-------------AAACTCATCAA---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------AGATGGCT TACTC-AAAAT---AGGAAAGTGACTAACTCCTTCCTTCCTTCCTTCTTTCCTTCCTTCCTTCCTCCC--TCCCTCCCTC CCTTCCTTATTGAATACCT >Homo_sapiens TTAAATGTTGTGTGAGAATACTTTGT----AAGTGGCAGA--------------AACTCAACTG---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------AAAATACTT CATGCAAAAAT---AGGAAAATGATTAG----------------CTCATGTGTTAATTCATCCAATCA--GTAAGTTGAC AGCACTCTGCTGAGTACCT Horse106_LINE >L1MAB_EC -------------------------------------------------------------------------TTTTTTT TTTTCAGTTTTATTGAGATATAATTGACATATAACATTGTATTATGTTTAAGGTGTACAACATAATGATTTGATATATGT ATATATTGTGAAATGATTACCACAATGAAGTTAATTAACACATCCATCACCTCACATAGTTACAAATTTTTTTTTTGTTT KTGTGATGAGAACTTTTAAGATCTACTCTCTTAGCAACTTTCAAATATACAATACAGTATTATTAACTATAGTCACCATG CTGTACATTACATCCCCAGAACTTAT--TCATCTTATAACT-GAAAGTTTGTACCCTTTGACCAACCTCTCCCTATTTCC CCCACCCCCCA---------GCCTCTGGCAACCACCAATCTAT------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------ >Equus_caballus ACCTCTTGCTTTGTGCTTTGTGAGGTAGATGCTCTCCTCACAAGACTTCTTC---CTGAAATGGATTCTT---TTTGTTG TT---------GTTGAGGTATAATTGACATGCAACATTATATTA-GCTTTAGGTGTGCAATATATTGATTCAATATTTGT ATATATTGCAAAATGGTCACCA-AATAAGTCTAGTTA--ACAACCGTCAT----CATAGTTACGAAATTTTTTTT----C TTGTGTTGAAAATTTTTAAGATCTGCTCTCTTAGCAATTTTC-AATATGCAATACAGTATTATTAACTATAGTCACCACG CTGTACATTACACCCCCATGACTTAT--TTGTTTTATAACT-GGGAGTCTGTACCTTTTGACT-CCCTTCATCCATTTCG TGCACCCCCTA---CCCTCTTCCTCTGGCAACCACCAAT-------CTGAAACGGATTCTT---ATGGAATTAAA--TAA GAAGAATTC----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------TGTGTGAGAGGGAAAATTTAGTACCCT >Ceratotherium_simum TCCTCTTGCTTTGTGCTTTGTGAGGTAGATGCTTTCCTCACAGGACTTCTTC---CTGAAATGGATTCTT---TTTTGTT TTA--------ATTGAGATATAATCGATGTACAACATTATATTA-GCTTTAGGTGTACAACATATTGATTCAATATTTGT GTATATTGCAAAATGGTCACAACAGTAAGTCTAGTTA--ACATCCGTCAC----CATAGTTACGAAATTTGTTT-----C TTGTGTTGAGAATTTTTAAGATCTACTCTCTTAGCAACTTTC-AATATACAATACAGTACTACTAACTATAGTCACCATG CTGGACATTACATCCTCATGACTCAT--TTGTTTTATAACT-GGAAGTCTGTACCTTTTGACT-CCCTTCATCCATTTCA CCCAACCCCTA---CCCCCTGCATCTGGTAACCACCAAT-------CTGAAAGGGATTCTT---ATGGAATTAAA--T-- -AAGAATTC----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------TGTGTGAGAGGGAAAATTTAGTACCCA >Myotis_myotis GCTTCTTGCTTTGTGCTTTGTGAGGTAGGTGCTCTCCTTAGAGAA---CTTC---CTGCAATGGATTT------------ -TAAAA-----ATGGAGGTGTAACTGACATGTAGCATTATATTA-GTTTCAGATGTACAACATCGTGATTCAATAGTTGC ATATATTGCAAAATGATCACCACAAT--GTCTCATTA--ACATCTGTCACCACACAGAATTACAACTTTTTTTTG----C GTGTGATGAGAA---------------CTCCTAGCAACTTTC-AATGTGCAATAGAGTATTGTTAACTTTCGTGACCATG CTGTACATTACATCCCTGTAACTTAT--TTATTTTATAAATGGAAAGTTTATACC-TTTGATT-CCCTTTACCCATTTCA CTCACCCCCCCCCTCCCCCCACCTCTGGCAACCGCCAAT-------CTGTAATGAATTCTT---AAGGAATTAAA--TAA GAAGAATTC----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------TGTGTGAGAGGGAAAATTTAGTACCCC >Rousettus_aegyptiacus GGTTTTTATTTTGCGTTTTGTGAAGT--GTGCTCTCAT---AGAA---CTTC---CTGAAATGAAGTTTT---TGGTTTT TTTTAA-----ACTGAGGTATAATTGACATGTAACATTATATTA-GTTTCAGGTGTACTATATATTTATTCAATATTTGT ATATATTGCAAAACGATTACCACAATAAGTCTCATTA--ACATCTGTCACCACACATAGTTACAATTTTTAT-------C CTGTAATGAGAACTTTTAAGATCTACTCTCTTAGCAACTTTC-AATATGCAATATAGTATTGTTAACTATAGTTACCATG CTGTACATTAC----------CTTACGGTTATTTCATAACT-GAAAGTTTATACCTTCTGACT-CCCTTCACTAGTTTTA CCCATCCCCCAA--CCTCCTGCCTCTGGCAACCGCCAAT-------CTGTAATGAATTCTT---CAGGAATTAAA--TAA GAAGAATTC----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------TGTGTGAGAGGGAAAATTTAGTACCCC >Canis_familiaris GCCTCTTGCTTTGTGCATTATGAAGTAGATACTCTCTTCGTAGAACTTCTTC---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------CTGCAAAGGATTCTG---ATGGGTTTAA----AA TAAGAATTC----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------TATGTGAGATGGAAAAGTCAGTACCCA >Felis_catus GGCTCTTGCTCTGTGCTCTGTGATGAAGATGCCCTCCTCGTAGAGCTTCTCC---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------CTGAAATGGATTCTG---ATGGGTTTAAAAATAA GAAGAATCCGGGGCGTCCGGGTGGCTCAGTCGGTTGAGCGTCCGACTTCGGCTCAGGTCACGATCTCACGGTCTGTGGGT TCGAGCCCCGCATCGGGCTCTGTGCTAATGGCTCAGAGCCTGGAGCCTGCTTCGGATTCTGTGTCTCCCTCTCTCTCTGC CCCTCCCCCGTTCATGCTCTGTCTCTCTCTGTCTCAAAATAAATAAAAACATTAAGAAAAAAAAATTTTTTTTTAAATAA GAAGAATTCTATGCGAGAGGGAAAATTTAGTACCCA >Manis_pentadactyla GCCTCTTGCTTTGTATTTTGTG--GTAGATGTTCTCCTCGTAGTATTTCTTC---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------CTGAAACGGATTCTG---ACAGATTCAAA--TAA GAAGGATTC----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------TATGTGAGAGGGAAAGTTCACTACCCA >Sus_scrofa GCCTCTTGCTTTGTGCTTTGTGAGGTAGATGCTCTCCTCATAGAA---CTTC---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------TTGAAATGAGTTCTG---ATGGGTTTAAG--T-- --AGAAGAC----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------TATGAGAGAGGGAAAATTTCGTACCCC >Bos_taurus AC----TACCTCCTGCTTTGTGAGGTAAATGCTTCCCTCATAAA----CTTC---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------CTGAGATGAATTCTG---AAGGATTTAAA---AA GAAGACTTC----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------TCTGTGAGAGGGAAAATATTGCACCCA >Condylura_cristata CCTTCTAGCTCTATGCTATGTGAGACAGATGTTCTCTT---AGAACTTCTTT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------CTGAAGCAGATACTG---ATGGAGTTATA--T-- -AAGAATTC----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------TATGGGAAAGGGACTGTTGAGTACCCC >Erinaceus_europaeus GCCTCTTGCTTAGCGTTTTGTGAGTCAGACTTTCTCCTTATAGAACTTCCTC---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------CTGAAACAGATTCTG---ATGGGATGGAA--TAG GAAGCATTC----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------TATGTAAAAGGGAAAATTTAGTACCCC >Homo_sapiens GCCACCTGCTTTGTGCATTGTAAAATGGATGCTGTCTTCATAGAATTTCTTC---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------CTGAAAGGGATTCTG---ATGGAACTAAA--CAA GAAGAATTC----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------TATGTGAGAGGGAAAATTCAGAACCCG Horse112_LINE >L1MA9 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------GTGGGGGAAATGGGGAGATGTTGGTCAAAGGGTA CAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGTACAGCATGGTGACTATAGTTAATAATACTGTATT GTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCACCACACACAAAAAAATGGTAACTATGTGAGGTGATG GATA---------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------TGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCA AAACATC-ACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA------- -------------------------------------------------------------------------------- ------------------------------- >Canis_familiaris GCTTCATAGACCTCATGATCA----TATAGAAAGAAAAG-TTTTTAGTA------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------TTTTTT---AAAC--AGATGTTGTT-----------TAAGAAGAGA---TGTTT-AAGGGTA CAAACTTGCAAGTG-GCC-CATAAATAAGTCCTGGGGATCTAATGCATGGCATAATGAATAGAGAAAACAACATTGTATT ATAATAATCACACTTGCTAAGAGACTAGATCTTAATTA-TTTCACCAC-AAAACAGAAATGATAATTATATAACATGACA GAGG---------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------CTAACC---TCTATAATGGCAAACATATCACAATATATAAATACATCA AATCAAC-ATGTGGTAAACTTTAAATTTACA----TATTATATGTCGAATATATTTCAATTTTTAAAAAAAA----AAGC -TGTAAATGGGTT---CTAGCAGAATCTCAGCAGCAAGAAGCA-----------ATAACTAA------------------ -------GAACTAAAGGCCA-GAGATCAACA >Felis_catus ACTTTGTAGACCTCATGATCA----TATAGAAAAAAAGG-TCTTCAGTATTTTTTTATGTCTATTTATTTTTGAGAAAGA GAGAGCATGAGTGAGGGAGGGGCAGAGAAAGAGGGAGACAGAGGCTTCAAAGCGACTCCATGCTGACAGACAAAGAACCT AACTTGGGGCTCAAACTCATGGAACCACCAGATCATGGCCTGAACCGAAGTCAGACACTTAACCGACTGAGCCATTCATG TGTCCCAGGTCTTTAATATTTTTT---AAGC--AGATGTTGTT-----------TAAGGAAAGATGTTGTTT-AAAGATA CAAACTTGCAAGTG-GTA-GATAAATAAATCCTGGAGATCTAATGTATGGTGTAGTGAATATAGAAAACAATATTGTATT ATAACCATCAAACTTGCTAAGAGACTAGATCTTAATTA-TCCCACCAC-AAAAAAGAAATGATAATTACATGATGTGACA GAGA---------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------TACTAACCCTCCCTGCAATGGCAATTGTACCACAATATATAAATGGATCA AATCAAT-ATGTTGTGCACCTTAAATGTACATGA-TATTATATGTCCAATATATTTCAAT-------AAAAAA---AAGT -TTTAAACTGGTT---CTAGCAGGAT-----------------------------------T------------------ -------AAACT--GGTTCA-AACATCAACA >Manis_javanica GCTTCAGAGAACTCATGCTCG----TCTAGAATAAAAAG-GCTTCTGTTC------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------TCTTTT---TAGC--CAGTG----T-----------TAAGGAGAGATGTTGTTT---GAATA GAAATTTGCAAGTA-GTA-GATAAATAAGTCCTGACAATCTAATGCATGGTATAGTGAATATAGACAACAATATTGTATT GTCGT-ACCAAACTTGTTAAGACACTA-ATTTTAGCTA-TCCCACCAC-AAAAAAGAAAAGATAATTATGTGACATCATA GAAG---------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------TGCTAATCATTGCTACAATGGTGATCTTATCATGTTAT------------ --------ATGTTGTATACCTTAAATTTAGAAAA-TATTGTA--TCAATTATATTTTAATTTTAAA----------AAGT TTTAAAATCACTT---CTAGCAGATTCTCAGCAGCAAGTAGCA-----------ATATCTAA------------------ -------GAACTGAGGTCCA-AAGATCTATA >Equus_caballus ACTTGGAAGACCTCATGCTCA----TATAGAAAGAAAGG-TCTTCAGCA------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------TCCTTT---AAGC--AGGTGTTGTT-----------TAAGGAGAGATGTTGTTC-AAGGGTA TCAACTTGCACCTC-GCA-GCGAAGTAAGTCCTGGAGCACTAATGCTTGGTGTGGTGGATGTAGGCAACAATATTGTATT ATAATCATCAAATTTACTAAGAGACTAAATCTCAATTA-TCCCACCACAAAAAAAGAAATGGTAATTATGCGACGTGATA GAGG---------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------TGCTAACCATTGCTACAATG----TCATATTGCAATAGATAAATGTATCG AATCAGCAATGCTATACACCTGAAATTTATGCAA----CATATGTCAGATCTATTTCAAT--TAAAAAAACCA---AAGC -TTTAAATCAGTT---CTAGCAGAATCTCAGCAGCAAGTAGCC-----------AGAACCAA------------------ -------GAACTAAGAA----------AAAA >Ceratotherium_simum GTTTCAGAGACCTCATGCTCA------CAGAAAGAATGG-TCTTCAGTA------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------TCCTTT---AAGC--AGATATTGTT-----------TAAGGAGAGAT---GTTT-AAGAATA CGAACTCGTAACTA-GTA-GAGAAATAACTCCTGGAGATCTAATGCATGGTATAGTAAGTATAG---ACGATATTGTATT ATAATCATCAAGTTTGCTAAGAGACTAGATCTTAATTA-TCCCATCAC-AAAAAAGAAATGGTAATTATGTGATGCAATA AAGGTGCTTGTTACCGGCACATTGGGTCCTTGCTGTCGCCCAGGATGGAAATCAAGAGAGACAACTGTAGGATCCCAAAA AGGGAACCCCAACTCCAGTCTCGGGAAGGCGCGGACCCACAGACACAGAAGACCGAGCTTGATGCAAACGCAAGAGGTAA GAGGTTTACTAAGCGGAGCTCCGGGCCGACACGTATCTCTCGCAGGAGACAGAGGAGTCGACCCCGAACCTTAAAGGGCA AGCTCTTTTNNNNNNNNNNGATAAACGTTCCCTCCTATACCAGGAATCCTTAGGGCGTGGAGGTGCCTGTCTCTAAGGTA GTAACTTTTAAATTTTTAATATAATTTACTTCCTTCACAACAAACAGGAGTAGAAACGTAGAAGTTTATTAGCTTGTGCA CAGGAGAAGCACCAGGCAGCCGGTGCGGAAAGGAAAGGGGCAGGTGATGGGCTCGTTAGGGAGCAGGATTGTGGGGCTTT TATTAGGCAACGGCTGGGGAGGAGCCTTATCAGGGCATGTAGAGGTGGGGTTGTGCTTGTGCCTGCACTATCGTGTAGCA CGCTACCACATGCGACGCATGTGTCATTAGCATGTTAGTTCTCCACCCCCAGGTGTGACTTTTACTATGGTAATGGGGCG AGGGTCACCTTCAGTGGACTCCTGGGTGCTAGGGTGCATTCATAAACCCAGGAAAGTCCGGAGGCTTCGGAATGTGGATC TTGGTGGTCTCTACCTGATTCCCTTAGCTTGCTGATTGGTTAGGGGCCTTATCTTGTTAGGCCAGGGGCTTTGCAGATGG CCCTGTCTTGTTAGGCTGGTTTCTGTCTCATGCTAACCATCACTACAATG----TCATATTACAATATATAAATGTATCA AATCAAC-ATATTATACACCTGAAATTTATACAC-CACTATATGTCAGCTATATTTCAAT---GAAAAAAAAG---AAGG -TTTAAATCGGTT---TTAGCAGACTCTCAGCAGAAAGTAGCA-----------AGAACTAA------------------ -------GAACTAAGGTTCA-AAGATGAATG >Sus_scrofa GCTTCAGAGATCTCATGCTCA----GACAGAAAG---GT-CTTTTTATG------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------TCATTT---AAGCTCTAAATCAGTT------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------CTAGTGGAATTTCAGCTGCAAGTAGCACTGAGAACTGTAGCACTGA------------------ -------GAACTAAGTTCCCTAAGATAAACT >Bos_taurus GTTTCAGTGATCTCATTCTCA--------GAAAGAAGAG-TTATCAGTA------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------TCCTTT---AAGCTTTCAGTCGGTT------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------CCAATGGAATCTCAGCAGCAAGTAGCA---------------CTAA------------------ -------TAACTG-TTTCCA-GAAATAAATA >Myotis_myotis GCTTCAGAGACCTCATGCTCA----TACAGGAAGTCAGG-TCTTTAGTA------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------TCATTT---AAG-----------TT------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------CTAGCAGAATCTCAGTAGCAAGTAACA---------------ATAA------------------ -------GACCCAACATCCCAAAGATCAGCA >Rhinolophus_ferrumequinum GCTTCAGGGACCTCATGCTTATTTCTACAGAAAGTAAGG-TCTTCAGTA------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------TCCTTT---AAGCTTT-AATCAGTT------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------CTAGCAGAATCTCAGTAGCAA-TAACA-----------ATAACTAGGGAAGGTGTCAATCCTAG AGGAAGTGAACAGGGGGTCT-GAGAGCAAAG >Solenodon_paradoxus GGTCCAGAGAACTCATGTTCA----CAGAGAAAGAAAAG-TCTTCAGTA------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------TCCTTC---CAGCTGGAAATTAATT------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------CTAGCAGAATTTCAGCAACAACTAGCA-----------ATAACTAA------------------ -------GAGCTAAGGTCCA-AAGATCAACA >Sorex_araneus GCTTCAGAGAACTCAAGCTGT----TACAGAAAGG-----TCTTCAGTA------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------TCCATT---AAACTTTAAATTGGTT------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------CTAGCAAAATTTCAGCAA--------------------------AA------------------ -------GAAATAAGGTCCA-AAGATCAACA >Homo_sapiens GCTTTAGAAA-CTCGTGCTCA----TACAGAAAGTAAAGATCTTCAATA------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------GTCTGT---GAGATTTAAATCAGTT------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------CTAGCAGAATCTCAGCAATGGATAGC------------------AA------------------ -------TAGTTAAGGTCCA-GAGATCAACA Horse116_LINE >L1MAB_EC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------TT TTTTTTTTTCAGTTTTATTGAGATATAATTGACATATAACATTGTATTATGTTTAAGGTGTAC-AACATAATGATTTGAT ATATGTA---------------------------TATATTGTGAAATGATTACCACAATGAAGTTAATTA----ACACAT CCATCACCTCACATAGTTACAA------------------ATTTTTTT-------------------------------- ---------------------------------TTTGTTTKTGTGATGAGAACTTTTAAGATC----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------TACTCTCTTAGCAACTTTCAAATATACAATACAGTATTATTAACTATAGTCACCATGCTGTACAT TACATCCCCAGAACTTATTCATCTTATAACTGAAAGTTTGTACCCTTTGACCAACCTCTCCCTATTTCCCCCACCCCCCA GCC--------------------------TCTGGCAACCACCAATCTATTCTCTGTTTCTATGAGTTTGG--------TT TTTTTTTTTTAGATTCCACATATAAGTG-----AGATCATGCAGTATTTGTCTTTCTCTGTCTGACTTATTTCACTTAGC ATAATGCCCTCAAGGTTCCATCCATG-TTGTCACAAATGGCAGGATTTCCTTCTTTTCTTTTTTATGGCTGAATAATATT CCATTGTATA---------------------------------------------------------------------- ---- >Canis_familiaris CTCAACCAGGATGAAGCCTCAGAATTATGTTGA-----------------CGA-----AGGAGTGTGTTTTT---TAAAA --TTTG-AAAAGA------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----TTTTCTAGTTTTATTGAGA---AATTGACATACATCACTGTC-TAAGTTTAAGGCATGC-AGCATGATGGTTTGAT TTACTTATATTGTTTTTTTTTTTTTTGATTTACTTATATTGTGAAGTGGTTATCACAGTAAGCTGCACTGTATTCTGTAT CCATCATCTCATATAGCTACAATAAAATGAAAATTAGAAAACTCTTCTTAAACTGTCACA-------TTGTCAACTATAC TATAAAGATAAAACAAAACAAAGCAAAACAAACTTTGTCTTTGTGATGAGAACTCTTAAGATC----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------CTCTCTCTTAACAACTTTGCTGGATATCATACAGCAGTGTTAGCTGCAGGCGTTATGTTGTACAT TATATGCCTAGTACT-----------TAATTGGAAGTTTGTACCTTTTGACCATCTTTCTCTAATTCCCCCT-CCCAATA CC---------------------------TCTGGTAACCATAAATTTGGTTTCTTTTTCTAGGAGCTTTG---------- CTTTTTTATTAGCTTCCATGTATAAGCG-----AGTTCATACCGTATTTGTTTTCT-----CTGACTTATTTTATTTAGC AGAATGCCTTCAAGG-TCCATCCGTGTTTTTTGCAGATGGTAGGATTTCC-----TTACTTTTTATGGTTGAATAATA-- -------------TAGAGCCTTTTTGAAAA----TACATATTCCTAAGCCCTGCCTCTAGAGAC--TCA----------- -GGG >Ailuropoda_melanoleuca CTCAACCAGGATGAGGCCTCAGAATCAAGTTGA-----------------GGA-----GGGAGGGTATTAAG---CTGAA --CCTTTTTAAAA---AATTATTTTTTTAAAGATTTTACTTATTTGAGAGCACGCGTGTGCATGTGCACACAAGCAGGGG CGAGAGGTAGAGGGAGAAGGAGAAGCAGGCTCCCTGTTGAGCAGGGAGCCCAATGTTTGACTTGATCCCAGGACCCTGAG ATCATGACCTGAGCTGAAGGCAGACGCTTAACCAACTGAGCCACTCAGGTGCCCCAAGCTGAACCTTCTTTAAAAATTTA AAAGATTTCTAGTTTTACTGCAA---AATTTACATGCATCACTCTG-TAAGTTTAAGGCATATAAGCATGATGGTTTGAT TTA--CA---------------------------TATATTATGAAGTGGTTTCCACAGTAGGCTTAACTGTATTCTGTAT CCACCATCTCATATAGATACAATAAAATGAAAATTAAGAAACTCTTCTGAAACTAATGTCACATTGTGTGTCAACTATAC TCTAAGGATA---------AAAACAAAACAAACTTTGTCTTCGTCATGAGAACTCTTAAGATCTACTCTCTTAAGGGCGC CTGGGTGGCTTTTGGTTAAGTGTCTGCCTTCGGCTCAGGTAATGATCCCAGGGTCCTGGGATCGAGCCCCGCATCCGGCT CCCTGCCTTGCAGGGAGCCTGCTTCTCCCTTTGCCTCTGCCTCTCTCTCTTTCTCTCTTTCATGAATAAATAAAATCTTA AAAAAAAAAAAGATATACTCTCTTAACAACTTTCCTGGAT---ATACAGCTGTGTTGGCTGCAGGCATTCTGTTGTACAT TACATCCCTAGTACT-----------TAACTGGAAGTTTGTGCCTTTTGACCACCTTTCTCCAATTTCCCCT-CCCAACA CC---------------------------TCTGGTAACCATAAATCTGATTTCTTTTTC-AGGAGC-------------- --TTTTTATTAGATTCCACATATAAGTG-----AGATCATACTGTATTTGTTTTTTT----CTGACATATTTTACTTAGC ATAATGCCTTCAAGA-TCCATCCGTGTTTTTTGCAAATGGTAGGATTTCC-----TCATTTTTTATGGCT---------- -------------GGGAGCCTTT-TGAAAA----CATACATTCCTGAGCCCTGCCCCTAAAAAC--CCATTTAGGAAATA -GAG >Equus_caballus CTCAATCAGGACTAGGCCTCAGAATGATACTGA-----------------GGA-----GGGAGTGTGTTAGG---CAGAG --CCTTTAAAAAA------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- TTTTTTTTCCAGTTTTATTGAGAAATAATTGACGT----CACTGTA-GAAGTTTAAGGTATAC-AGCATAATGGTTTGGT TTA--CA---------------------------TATATTGTGAAATGATTACCACAATAGATTTAGTTA------GCAT TCATTACCTCATATAGATATAATAAAAAGAATAGAAAAACAAT------------------------------------- ---------------------------------TTTCTCCTTATGATGAGAACTCTTAGGATC----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------TACTCTCGTAACAACTTTGCTATGTACCATACAGCAGTGTTAACTGTAGTCATCATGCTGTACAC TACATCCCTAGTGCTTACTTATCTTGTAACTGGAAGTTTGTACCTTTTGACCACCTTCCTCCTATTTCCCCT-TCCCCCA CCCCCTGCC--------------------TCTGATAACCACAAATCTGATCTCTTTTTCTATGAGTTTGG---------- TTTTTTTATTAGATTCCACATATAAGTG-----AGATCATACAGTATTTGTCTTTCTCTTCCTGACTTATTTCACTTAGT ATGATGCCTTCAAAG-TCCATCCATG-TTTTTGCAAATGGTAGGATTTCC-----TCTTTCTTTATGGCTGAATAATA-- -------------CAGAGCCTTT-TGAAAA----CATATCTTCCTAAGCCCTGCCCCTAGGGAC--CCATTCAGGAAATA TGGG >Ceratotherium_simum CTCAACCAGGACTAGGCCTCAGAATCATATTGA-----------------GGA-----GGGGGTGTGTTGGG---CAGAG --CCTTTAAAAAA------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------A TTTTTTTTCCAGTTTTATTAAGAAATAATTGACAT----CACTGTA-TAAGTTTAAGGTATAC-AGCATAATGGTTTGAT TTA--AA---------------------------TATATTGTGAAATGATTACCACAATAGATTTAGTTA------ACAT CCATCACCTCATATAGATACAATAAAAAGAAAAGAAAAAGAATTT----------------------------------- ---------------------------------TTTCTCCTTGTGGTGAGAACTCTTAGGATC----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------TACTCTCGTAACAACTTTCAAATATACCATACAGCAGTGTTAACTGTAGTCATCATGCTGTACAT TACATCCCTAGTACTTATTTATCTTGTAACTGGCAGTTTGTATCTTTTGACCACTTTCTTCCAGTTTGGCCT-TCCCCCA CCCCCTGCCTCTGATAACCACAAATCTGGTCTGATAACCACAAATCTGGTCTCTTTTTCTCTGAGTTTGGTGGTTTTTTT TTTTTTTTTTAGATTCCACATGTAAGTGAGATCAGATCATACAGTGTTTGTCTTTCTCTGTCTAACTTATTTCACTTAGC ATGATGCCTTCAGAG-TCCATCTACG-TTTTTGCAAATGGTAGGATTTCC-----TCCTTTTTAATGGCTGAATAATA-- -------------CGGAGACTTT-TGAAAA----CACATATTCCTATGCCCTGACCCTAGAGAT--TCATTCAGGAAATA TGAG >Sus_scrofa TTCTACCAGGGTTAGGGCGCAGAATCATTTTGA-----------------GGA-----GGGAGTGTATTGGG---CAGAG AGCCTTTTGAAAA------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------CACAGATGCCCAAGCCCTGCCCCTAGAAAC--TCTTTCAGGGAATA AGAG >Bos_taurus CTCAACCAGTGTTAGGCCTCAGAATCATTTTGA-----------------GGA-----GAGACCATGTTGGA---CAGAG --TCTTTTGAAAA------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------CATATATTCCTAAGCCCTGCTCCTGAACCCGGCCTTTCAGGAAAGA TGAG >Myotis_myotis CTCAACCAGGGCTAGGTCTCAGAATCATATTGA-----------------GGA-----GGGAGTGTGTTGGG---CAGAG ---CTT-TAAAAA------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------CTCATATTCCCA-GCCCTACTCCTATAAAC--TCATTCAGGAAATA TGAG >Rousettus_aegyptiacus CTCAACCAAGGCTAGGTCTCAGAATCATATTGAGTGTGTGTGTGTGTGTGGGG-----GGGGGTGTATTGGG---CAGAT --GCTTTTGAAAA------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------CACATATTTCTGAGCTCTGCCCTTAGAGAC--TTATTCAGGAAATA TGAG >Condylura_cristata CTCAGCCAAGACTAGGCC-CAGAGTCACTCTGA-----------------GGA-----GGGAGTGCGTTGGG---CAGAG --CTGTTTGAAAA------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------CCACATGTTCCGACATCCTGCCCTTAGAGAC--CCATTCAGGAAATA -GGG >Solenodon_paradoxus GTCAACCAGGGCAAGGCTTCAGAATTATATTGA-----------------GGA-----GAGAGTGTATTGGG---CAGAA --CTTTTTGAAAA------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------CATGAAGTCCTAATTTCTGCCCTCAGGGGC--CTATTCAGGAAATA TGGG >Homo_sapiens CTTAACCAAGGCTAGGCCTCAGAATGATTCTGA-----------------GGACGGGCTGGAGTGTGTTGGG---CAGAG --CCTTTTGAAAA------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------CACACATTCCTAAGCCCTTCCCCTAGAGAC--TGACTCAGGAAATA ATAG Horse117_LINE >L1MAB_EC -------------------------------------------------------------------------------- ------------TTT---------------------------TTTTTTTTCAG--------------------------- ------------TTTT-------------------------ATTGAGATATAATTGACATATA--ACATTGTATTATGTT TAAGGTGTACAA-CATAATGATTTGATATATGTATATATTGTGAAATGATTACCACAATGAAGTTAATTAACACATCCAT CACCTCACATAGTTACAAATTTTTTTTTTGTTTKTGTGATGAGAACTTTTAAGAT---CTACTCTCTTAGCAACTTTCAA ATATACAATACAGTATTATTAACTATAGTCACCATGCTGTACATTACATCCCCAGAACTTATTCATCTTATAACTGAAAG TTTGTACCCTTTGACCAACCTCTCCCTATTTCCCCCACCCCCCA------GCCTCTGGCAACCACCAATCTATTCTCTGT TTCTATGAGTTTGGTTTTTTTTTT------------------------------TTAGATTCCACATATAAGTGAGATCA TGCAGTATTTGTCTTTC--------------------------------------------------------------- ---------- >Canis_familiaris AGGGAAAGCTAAAGAATCAA-TAAGAAATGGTTACC---TTTTAGGG-AGAGATTTC---CAGGCTAC----TCTCAA-- -CAAAA------TTT-------TAAATGAACTGTAATGAT--TTTTTTTTTAAACTATGAGTATAGGGAATAAAATACAC TAGTATGTCTCTCTTTTTAAATTGGGATATAAAAAAAATAAATTGGGATATAATTGACAT-----ACATTATATTC-ATT TCAGATGTACAACCCTAATGATTCAATATTTGTATATATTGTGAAATGAT---CACAGTAAGTCTAGTTA--ACATCCAT TACCTTAC--AGTTATATATATATATATATATT-TGTGATGAGAACTTTTAAAGTTACTCTCTTTCTTAGTGACTTTCAA ATATACAATACAGTATTTTTACCTATACTCACCATGCAGTACATTACAACCTCAGGACATACTTATTTTTTAACTGGTAG TTTGTACCTTTTAACC-CCCTTTACCTATTTTCCCCA-CCCCCACTTCCTGCCTCTGACAACTGCCAATCTGTTCTCTGT ATCTATGAGTTCATTTTTTTGTTT--TGTTTT----------------------TAAGATTCCATATATAAGTGAG---- --------------------TATGCTACTCTAAA---ATTTTTAAGCACAGTTGTAAAATATTAATGAAAATATTATTTA GAGTTTG-TT >Felis_catus ------------------AA-TAAGAAATGGTTACC---TTGTTAGG-GAAAATCTC--------TAT----TCTCAA-- -TTAGAATTTTTTTTG----ACATAGTGAACTGTGATAATTATTTTTTTTAAAATCATGATTGTAGGGAATAAAATACAC TACTATATCTCTTTTT-----------------------AAATTGAGATATAATTGATAT--A--ACATTATATTC-ATT TCAGATGTACAA-CATAATGATTCGATATTTGTATATATTGTGAAACAAT---CACAATAAGTCTAGTTA--ACATCCAT CACCTCACATAGTTACAA-----TTTTTTTTCT-GGTGATGAGAACTTTTAATAT---TTACTCTCTTAGCAACTTTCAA ATATACAATACAGTATTTTCACCTGTACTTGCTGTGCTGTACATTATATCCCCAGGAC---------------------- TTTGTACCTTTTGATC-CCCTTCACCCATTTTCCATA-CCCCTACCTTCTGCCGCTGACAAACACCAATCGGTTCTCTGT ATTTATGAGTTTGATGCTGTTATTGTTGTTTTTGTTCTGTTTTGTTTTTTTTT-TAAGATTCCACATATAAGTGAG---- --------------------CATGCTAGTCTAAA---ATTTTTAAGCAAAGTTGCAAAATACTGATGAAAATATTATTTA GAGATTG-CT >Manis_pentadactyla GGGGAAGGGTAAAGAATCAA-TGAGAAAAAATTACC---TTTTGGG--AAAGATTTC---CAGGCTA------CTAAA-- -CTAAAAACCATTTTTATTCATATAGTGAGCTGTGATAAT--TATTTTTTAAAATGACAGTTGTAGGGAATAAAATACTC TAACATGTCTCTTTAG-----------------------AAATTGAGATATAACTGACATACA--ACATTACATTA-GTT TCAGGTACACAA--------------------TGTGATTTGTGAAATAATCACCACAATA-----AGTTA--ACATCTGT CACCTCACATAGTTACA------CATTTTTTCT-TGTGATGAGAACTTTTAAGAT---CTACTCTCTTAGCAACTTTCAA ATATGTGGTACAGTATGGTTAACTATAGTCACCATGCTGTACATTA----------ACTTATTTATTTTATTAC-AGAAG TTTGTACCTTTTGACC-ACCTTCACCCATTT-CCCCACCCCCTACACTCTGCTTTTGGTAACCACCAATCTGTTCTTTAT ATCT-TTATTTGGATTTTTTAATTTTAAATTTTT--------------------AAAGGTTCTATATAT--GTGAG---- --------------------CAGGCTGCTCTAAA---ATTTTTAAGCAAAGTTGTACCA---TGAAGAAAATATTATGAG GAGATTG-TT >Equus_caballus GGGGAAGGGGAGAGAATCAA-TAAGAAATGGTTACC---TTTTGGAG-GAAGATTTC---CAGGCTGC----TCTAAG-- -TTAAAAAAAAATTT-------AATTCAAACTATGATAAT--TATCTTTTAAAACCATGATTGTAGGGAGTAAAATACAC T---GTCTCTCTTTTT------------------------AACTGAGATAGAATTGATGTACATTATATTATATTA-GTT TCAGGCATACAA-TACAGTGATTCAATATTTGTGTATATTGTGAAATGATCACCGCAATAAGTCTAGTTA--ACATCCAT CATCACACATAGTTACAAA----TTTTTTTTCT-TGTGATGAGAACTTTTAAGGT---CTACTCTATTAGCAACTTTCAA ATATATAA-ACAGTGTTGTTAACTACAGTCACCACGCTGTACATTACACTCACAGGACTTGTTTATT-----ACTGGAAG TTTGTTCTTTTTGTCT-TCCTTCATCCATTTCCCCCGCCCCTCACCCCCCAACTCTGGCAACCACCAATCTGTTTTCTGT ATCTATGAGTTTGTTTTCTTTCCT------------------------------TAAGATTCTACATATAAGTGAG---- --------------------AAAGCTCCTCCAAA---ATTCTTAAGGAGAGTTATACCA---TGATGAAAATATTATTTA GAGATTT-TT >Ceratotherium_simum GGGGAAGGGTAAAGAATCAG-TAGGAAATGGTTACC---TTTTAGGG-GAAGATTTC---TAGGCTAC----TCTAAA-- -TTAAAAAAGAAATT-------ATAGTGAACTGTGAT-----TATTTTTTAAAACCATGATTGTAGAAAATAAAATACAT TAATGTGTATCTTTTT----------------------AAAATTGAGATATAATTGACAT-----ACATTATATTA-ATT TCAGGTGTACAA-TATGGTGATTTGATACTTGTATGTATTGTGAAATGATCAGCACAATAAGTCTAGTTA--ACATCCAT CATCACACATAGTTACAA-----TTTTTTGTCT-TGTGATGAGAACTTTTAAGAT---CTGCTCTCTTAGCAACTTTCAA ATATACAATTCAGTATTGTTAACTATAGTCACCATGCTGTACATTACATTCATGGGACTTATTTATTTTATCACTGGAAG TTTGTACCTTTTGACC-CCCTTCACCCATTTCCTCCACCCCCCAACCCCCGCCTCTGGC-ATCACCAATCTGTTCTCTGT ATCTATAGGTTCGTTTTTTTGTTTTTTGTTGT--TGCTTTTTTTTTTTTTTTTGTAAGATTCTACATATACGTGAG---- --------------------TAGGCTACTCAAAA---ATTTTTAAGCCAAGTCGTACCA---CGATGAAAATATTTTTTA GAGATTG-TT >Sus_scrofa GGGG-AGGGAGAGGAATCAA-TATGATACAGTTACCTTTTTTTAGGG-GAAGATTTC---CAGGCTAC----TCTAAA-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------ATTTTTAAACAGTCATACACCA---TAATGAAAATATTACTTG GAGATTG-TT >Tursiops_truncatus GGGGAAGGGTGAGGAATCAATTAAGATATGGTTGCC---TTTTGGGG-GAAGATTTC---CAAGCTAC----TCTAAA-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------ATTTTTAAACAGAGTCATACCA---TGATGAAAATATTATCTA GAGATTG-TT >Myotis_myotis NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTTAAA----TTTGGGG-GAAGATTTC---CAGGCTAC----TCTAAA-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------TTTTTTAACTGAAGTTGTACCA---TGATAAAAAGATTATTTA GAGGT-GACT >Rousettus_aegyptiacus GAGGATGAGGAAAGAATCAA-AAAGAAATGGGTACA---TTTTGGGGAGAAGATTTC---CAGGCTAC----TCTAAA-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------AATTTT----------ACGCCA---T----------TTATTTA GAGACTG-TT >Condylura_cristata GGAGAAAGGCATAGGATCAG-TAAGAAATGGTTGCC----CGTGGGC----GATTTC---TAGTTTACACTAACTAAA-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------ATTTTTTAAAAATGTCATACCA---TGTTGAAAATATTACTTT GAGGTTGATT >Sorex_araneus GGGGAAGGGGAAGGAATC--------------------TTTGGGGGAAGAAT-TTTT---CAGATGAT----TCTAAA-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------ACTTTTAAATAAAGTCATGTCA---TGATGAAAATGTTATTTA GAGCTT-ATT >Homo_sapiens CGTAAAGGGTAAAGAATCGA-TAAGAAATGGTTACC--TTCTTGGGA---AGATTTC---CAAGCTAC----CCTTAC-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------ATTTTTAAGCAAAGTTGTATTA---TGATGAAAATATTAGTTA AAGATTG-TT Horse118_LINE >L1MAB_EC ------------------------------------------------------------------------------CC AAACTCATAGAAAC--AGAGAATAGATTGGTGGTTGCCAGAGGC------TGGGGGGTGGGGGAAATAGGGAGAGGTTGG TCAAAGGGTACAAACTTTCAGTTATAAGATGAATAAGTTCTGGGGATGTAATGTACAGCATGGTGACTATAGTTAATAAT ACTGTATTGTATATTTGAAAGTTGCTAAGAGAGTAGATCTTAAAAGTTCTCATCACAMAAACAAAAAAAAAATTTGTAAC TATGTGAGGTGATGGATGTGTTAATTAACTTCATTGTGGTAATCATTTCACAATATATACATATATCAAATCATTATGTT GTACACCTTAAAC---------ATAATACAATGTTATATGTCAATTATATCTCAATAAAACTGAA--------------- ---------------------------AAAAAAAAA-------------------------------------------- --------------------------------- >Equus_caballus AATCCA-GAGAGTCCTTCATTAAAGAGATGGCCCTAAGCCAAACTTGGGTCTT---CAAA--GGCATAGGATCTG----- ------------AC--AGAGAGCAGATAGGTGGTTGCCAGAAACAAGGGTTGGGGAGGGGGTTGAAATGGGTGAA----G TCGAAAGGTACAAACTTCCAGTTATAAAATAAATAAGTCATGGGTATGTAAAGTACAGCATGGTGACTATAGTTAATAAT ACTGTATTGCATGTTTGAAAGTTGTTAAGAGGATAAATCTTAAA--TTATCATCAC---AA-GAAAAAATATTCTGTAAC TATATATGGTGATACA--TGTTAACTAGACTTGCTATGGGGATCATTTCACAATATATGCAAATATCAAATCATTATGTT GTACATTTGAAAC----------TAGCATAATGTTGTATGCCAATTATACCTCAATAAG--------------------- ---------------------------AAAAATAA----ATAAGACCTATAGGATCTG---GAA-----------GGCCT G-GGGTAGATGACTCCAGTTAA-CGCAGCAGCA >Ceratotherium_simum AATCCA-GATAGTCCTTCATTAAAAAGATGGCCCTAAGCCAAACTTGGGTCTT---AAAG-ACATATACAATCTG----- ------------AC--AGAGAGCAGATAGGTGGTTGCCAGAGGTGATGGGTGGGGGGTGGG-TGAAATGGGTGAGGGGAA TCAAAAGGTACAAACTTCCAGTTACAAAATAAATAAGTCATGGAGGTGTAATGTACAGCATGGTGACTATAGTTAATAAT ACTGTATTGTATATTTGAAAGTTGCTAAGAGAGTAAATCTTAAAAGTTCTCATCAC---AA-GAAAAAAAAATCTGTAAC CATGTATGGTGATGGA--TGTCAACTAGACTTACTGTGGTGATCATTTCACAATATATACAAATATCAAATCATTATGTT GACCACCTGAAAC----------CAACATAA---TCTACATCAATTATACCTCAACA----------------------- ---------------------------AAAACCAA----ATAAGACCTATAGGATCTG---GAGTAGGCCTGGAGAGCCT G-GAGTAGATGACTCCTGTTAA-CATAACAGCA >Myotis_myotis AATACA-AGGAGCCTTTCGTTAAAGAGATGGCCCTAAGCCAAACTTGGGCCTT---CCAAGATATATAGGGTCTG----- ------------ACAGAGAGAACAGATTGGTAATTGCCAGAGGCAGGCTGTGGAAGGTGG--CAAATTGGGTGAAAAGGG TCAAAAAGTACAAACTTCCACTTATAAAATAAATAAGTCATGGGGATGTAATGCATAGCATCAT-ACTGTAGATAATAAT ATTGTGTTGCATATTTTAAAATGGCCAAGGAAATAAATCCTAAAAGATCTCATCAC---AA--AAAAAGAAATTTGTAAC TATGTATGGTGAAGGA--TGTTAACTAGACTTATTGTAATGACCATTTCACAATATATAAAAATATAAAATAATTATGTT GTATACCTGAAACTAATATAATGTAATATAATGTTGTATGATAATTATGCTTCAATTTATATATATATATATATATATAT ATATATATATATATATATATATATATTAAAAAC------AACCAACCAATAGGATCTC----AGTAGGCCCTGATGGCAT G-GGGTAGATGATTCTAGTTAC-CACAATGGCA >Rousettus_aegyptiacus AATCTA-GGAAGCCCTTCATTAAAGAGATAGCCCTAAGCCAAACTTGAGACTT---CAAAGACATATAGGATCTG----- ------------AC--AGAGAACAGATTGTTGATTGCCAGAGGCAGGATATTGAGGGTGGG-CAAAATGGATGAAAGGGG TCAAAATATACAAATTTTCAGTTTTAA----AATAAGTCATGACGATGTAACACACAGCATGGC-TCTAAAGTTA----- ----TATTGCATATATGAAAGTTACTAAGAGAGTAAATCTTAAAAGTTCTCATCAC---AATAAAAACAAATTCTGTAAT TATGGATGA-GATGGA--TGTTAATTAGTTTTATTGTGGTGATCATTTCACATTATATGCAAATATCAAATCATTATGTT ATACACCCAAAAC----------TAATATAATGTTGTATATCAATTATACTTAAATAAAAATAAAAAT------------ ---------------TTTTTAAATACAAAAAATA-----AAAAGACCAATAGAATCTG---GAGTAGTCCTGGATAACCT G-GAGTAGATGACTGCAAATAA-CAAAATGGTA >Canis_familiaris AATCTA-GGGAGTTTCCCCATAAAGAGATAGCCCTAAGCCAAACATGGCCCTT---CAAAGACCTATAGGATGTG----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------GAGTAGGCCTGAGCAG-CT G-GGTGAGATGACTCCCATGAA-CACAGCAGAA >Felis_catus AATCCA-GGGAGTTCTCCCCTAAAGAGATTGCCCTAAACCAAACATGGGCCTT---CACATACCTATAGGATGTG----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------GAGTACATCTGGACAG-CT GAGGTTAGATGACACCCGTGAA-GACAGCAGAA >Manis_pentadactyla AATCCA-GGGAGCCCTCCGTTAAAGAGGTGGCCCTAAACCAA-CTTGGACCTT---CAAAGATCTTTAGGACCCA----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------GAGTAGGCCTAGAAAGCCT CGGGGAAGATGACTTTAGTTAATCACA-CAGCA >Sus_scrofa AATTCA-GGAAGCCTTTCATTATAGAGATGGCCCTAAGCCAAGCCTGGGTCTT---TAAAAACCTTTAGGATCCC----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------AAGTAGGCATGGAGAGCCT T-GGGTAGAAGACCCCA-CTAA-CACAATAGCA >Tursiops_truncatus AATCCA-GGAGGCCCTTCATTACAGAGATGGTCCTAAGCCAAACTTGGACCTT---CAAAAGCCTACAGGATCTG----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------GAGTAGGCATGGACAGCCT G-GGGGAGATGACTGTAGCTAA-CACAACAGCA >Condylura_cristata AATCCT-GTGAGCCCTTCACTGAAGCCATGGC----------ACTTGGGCCTT---TGCGGTCACACAGAATCTG----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------GAGAA----CTGACAGCCT G-GATCAGATGACTGAAGGTAA-CACAGCAGCA >Uropsilus_gracilis ATGGCTGGTGAACATTTTACTAAAGCCATGGCACTAAACTAAACTTGGGCCTT---TGAAGACCTATGGAGTCTG----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------GAGAAGAC-TGGACAGTCT G-GATCAGAGGACTGCCAGTAA-CACAGCAGCA >Homo_sapiens AAGCCA-GGGTGCCTTTATT---AGAGATGGCTGTATGCCAAACTTGGTCCTT---AAAAGATCTATAGGATCTG----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------GAGTAG---------GCCT G-GAGTAGATTACTTCAATTAA-TGCAACAGTA Horse120_LINE >L1MAB_EC -------------------------------------------------------------------------------- ----------TTTTTTTTTTTCAGTTT-TATTGAGATATAATTGACATATAACATTGTATTATGTTTAAGGTGTACAACA TAATGATTTGATATATGTATATATTGTGAAATGATTACCACAATGAAGTTAATTAACACATCCATCACCTCACATAGTTA CAAATTTTTTTTTTGTTTKTGTGATGAGAACTTTTAAGATCTACTCTCTTAGCAACTTTCAAATATACAATACAGTATTA TTAACTATAGTCACCATGCTGTACATTACATCCCCAGAACTTATTCATCTTATAACTGAAAGTTTGTACCCTTTGACCAA CCTCTCCCTATTTCCCC-----CACCCCCCAGCCTCTGGCAACCACCAATCTATTCTCTGTT------------------ ------------------------------------------------------ >Equus_caballus GACTAG---TGATTAGT------------AAAAAAAAAAGTCTGAAT---TTAGTGT-AAAGGATTTCCC---TGAAGAA GGCTTTG---GTTTTTTAAGTAATTTTTTATTGAGATATAATTGACATATAAC---ATATTA-GTTTCAGGTGTACAACA TAGTGATTCGATATTTGTATATATTGTGAAATGATTGCCACAATAAGTCTAGTTA--ACATTTGTCACCACGTGCAGTTA CAAATTTTTTTTCT-----TCTAATGATAATGTTTAAGATCTACTTTCTTAGCAACTTTCAAATATACAATACAA---TA TTAACTATAGTCACCATGCCGTACGTTACAGCCCCAGGACTTGTTTATTTTGTAACTGGAAGTTTGTACCTTTGGACCCA CTTCACTCATTTTGCCTACCTCCACCTCCCA-CCTCTGGCAACCACCAATCT-------------TGAAGAAGCGTTTA- --GGATCAAGCAGAT-ATATGCTTGAATTATGTCTCTGCCATTTACTGGCCATT >Ceratotherium_simum GACTAG---TGACTATT----------ACAAAGAAAAAAGTCTGAAT---ATAGCAT-AAAGGATTTCCC---TGAAGAA GGCTTTA---TTTTTTTAAGTAATTTTTTGTTGAGAAATTACTGACATATAAC---ATATTA-GTTTCAGTTGTACAACA TGATGATTTGATTTTTGTATATGTTGTGAAATGATCGCCACAGTAAGTCTAGTTA--ACATTTGTCACCATAGGCAGTTA CAAATTTTTTTTCT-----TGCGATGATAACGTTTAAGATCTAC--TCTTAGCAACTTTCAAATATACAATACGGTATTA TTTGCTGTAGTCACCATGCCATACATTAGATCTACAGGACATGTTTATTTTATAACTGGAAGTTAGTACCTTATGACCCC CTTCACCCGTTTTGCCCACCTCCACCCCGTG-CCTCTGGCAACCACCCATCT-------------TGAAGAAGGCTTTA- --GGATCGAGCAGAT-ATGTGCTTGAATTATGTCTCTGCCATTTACTGGCCATT >Myotis_myotis GACTAG---TGACTCGTTTTTTT------------AAAAGTCTAAAT---ATGGTAT-AAAAGATTTCCC---TGAAGAA GGCTTTA----ATTTGTAAATAATTTT---TTGAGCTATAATTAACATATAACATTATATTC-GTTTTAGGTGTACAACA ---TGATTTGAAATTTGTATATATTGCAAAAAAATCACCACAGTAAGTCTAGTTA--GCACCCATC-CAACATGTAATTA CAATTTTTTCT--------TGTGATAAGAACTTTTAAAATGTACTCTCTTAGCAACTTTCAACTATACAATAAAGGGTTA TTAACTATAGTCAC---------------ATCCCCAGGACTTACTTATTTTATAACTGAAAGTTTGTACCTT-TGACACC CTTCACCCATTTCCCCT-----GGACCCCCA-CCTCAGGCAAACACCAATCC-------------T---GAAGGTTTTA- --GAATCAAGCAGGT-ATGTGCTTGAGTTATGCCTCTGCCACTTTCTGGCCGTT >Rousettus_aegyptiacus GACTAG---TGACTATT-----------AAAAAAAAAAAATCCAAAT---ATGACATAAAAAAATCTCCC---TGCAAAA GGCTTTA----TTTTTTTCATAATTTTTCATTGAGCTACAATTGCCTTATAAC---ATATTA-GTTTCAGGTTTACAACA TAATGATTCGAAATTTGTATATATTGCAAACTGATCACCATGGTAAGTCTAGTTA--GCATCCCTC-CAACATGTAATTA ATAATTTTTTTTG------CATGATGAGAACTTTTAAAGTCTACTCTCTTAGCAGCTTTCAAATATACAACACAGTGTTA TTAGCTATAGTCACTACGTTGTACATTACATCCCTAGGACTTGTTTATTTTATAACTGGAAGTTTGTACTTTATGACCAT CTTCACTCATTTATCC------CAACCTCCA-CCTCTGGCAACCACCAGTCT-------------TGAAGAAGGCTTTA- --GAATCAAGCTGATAATGTGCTTGAGTTATGTCTCTGCCATTTACTGGCCCTT >Canis_familiaris TACTCG---TGACTATTTTTTTT--------------AAGCCTGAAT---ATAATAT-ACAGGATTTCAC---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------TGAAGAAGACTTTG- --GAATCAAGCAGAT-ATGTGCTCTAATTACGTCTCTGCTATTTACT----ATT >Felis_catus CACTAG---TGACTATTTTT----------AAAAAAATATTCTAAAT---ATAACAT-AAAAGATTTCCC---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------TGAAGAAGGCTTTA- --GAACCAAGCAGAT----TGCTTGAATTATGTCTCTGCCATTTACTAGCCATT >Manis_pentadactyla ---------TGACTTTTTTTTT---------------AAGTCTGAGT---ACTGCGT-AAAGAATTTCTC---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------TGAAGGAGGCTTTG- --GAATCCAGCGGTT-TTGTGCTAGAATTATGTCTGTGCCATTCACTGGCTGTT >Sus_scrofa GACTAG---TGACTTTTTTTCTTTTTTTTTTTTTTTTACATCTGAAT---ATAGCAT-GAAGGTTTTCCC---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------CAAAGAAGGCTTTA- --GAATCAAGCAAAT-TTGTGCTGGAATTACGTCTCTGCCATTTACTGACCATT >Tursiops_truncatus GACTAG---TGGCTTTTTTTTTTTTTTTTTTTTT---ACGTCTGAAT---ACAGCAT-AAAGGATTTCCC---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------TGAAGAAGACTTTA- --GAATCAAGCAGAT-ATGTGCTTGAATTATGTCCCTGCCATTTACTGGCCATT >Condylura_cristata GACTAG---TGAGCAT-------------CAAAAGGAAAATC--AATCAAATAACAT-GAAGGATTT-CC---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------TGGAAATGGC-TTA- --AAAGCAAGCAGAT-CTGTGCTTGAATTATGTCTCTGCCATTTAATGATCCTT >Uropsilus_gracilis CACTAA---TGACTGT-------------CAGAGGGAAA-----AGGCAAATAAAAT-AAAGCCTTT-GC---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------TGG--ATGACTGTA- --AACTCTATT--TC-CAATGTTTGAATTATGTCTCTGCCATTTACTGACCATT >Homo_sapiens GACTGGCCATGACTTTTTTTTTTT-------------AAGTCCAAAT---ATAGCAT-AAAAGATTTCCC---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------TGAAGAAGGCTTTA- --GAATCAAGGAGAT-ATGTGATTCAATAATGTCTTTACCATTGACTGGCCATT Horse125_LINE >L1MAB_EC -------------------------------------------------------------------------------- --------TTTTTTTTTTTC----AGTTTTATTGAGATATAATTGACATATAACATTGTATTATGTTTAAGGTGTACAAC ATAATGATTTGATATATGTATATATTGTGAAATGATTACCACAATGAAGTTAATTAACACATCCATCACCTCACATAGTT ACAAATTTTTTTTTTG---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------- >Equus_caballus CTGTTC----TGTATGACTATTTTT---TCT-----------AATATACCCAAAAGCAG-CCACCATCAGCTC---AAAA GTGTA---CTCTTTTTTTCCTCCTAGTTTTATTGAGAAATAATTGATATACATCACTGTAGAA-GTTTAAGGTGTACAAT ACGAGGCTTTGAATTG--CATATATTGTGAAATGGTTACCACGGTAGGTTCAGCTA--CCATCCATCTTCTCATATAGAC ATAAC--------------AAAAGTGTA---TTCT--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TGTTACTCCATTTCTGCATGTGTTCATCGGCATCCTGGTCGCTAAA >Ceratotherium_simum CTGTTC----TGTATGACTATTTTT--TTCT-----------AATATACCCAAAGGGTG-CCACCATCAGCTC---AAAA ATGTA---CTCTTTTTTTC-----AGTTTTATTGAGAACTAATTGACATACATCACGGTATAA-GTTTAAGGCATACAGA GTGATAGCTTGATTTA--CATGTATTATGAAATGATTACCACACTAGGTTCCGCTA--ACATCCATCTTCTTGTATAGAT ACAAT--------------AAAAATGTA---TTCT--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TGTTACTCCATTTATGCACGTGCTCAGGGGCATCCTGGTCACTAAA >Myotis_myotis CTATTG----TGTATGACTATTTTT---TGT-----------AATATACCTAAAAGTTC-CTACCATAAGTTC---TAAT ATGTA---TTTTTCCT--------AGTTTTATTGAGAAATAATTGATATGT--CACAGTGTCA-GTGTAAGGTGTACAGC ATGATGATTTGATTTA--CATATACTGTGAAATGA-TACCATAATA-GTTCAGTTA--ATATCCATCTTTTCATATAGAT ATGAT--------------AAAAATGTA---TTCT--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TGTTGTTCCATTTATGCATGTGCTCATGGGCATCTTGATCACTAAA >Rousettus_aegyptiacus CTGTTT----CGTATAACTTTTTTTATTTTT-----------AGAAGACCTAAAATTTC-CTACCATCAGCTC---AAAA ATGTA---TTTTTTTTC-------AGTTTTATTGAGAAATAATTGACATACAA-ACAACATAA-GTTTAAGGTGTATGGC ATGATGGTTTGATTTA--CATACATTTAAAAATAATTACCACAATAGGTTCA------ACATCCATCTTCTCATACATAT ATGAT--------------AAAAATGTA---TTCT--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TGTTATTCCATTTGTGTAGGTGCTCATGGGCATCCCAATCATTAAA >Canis_familiaris CTGTTTGCTCTGTGTGATTCTACTT-TATCT-----------AACATGCTCAAAAGGTCTTCACCATCAGTTC------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AAAA-TGTA---TTCT--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TGTTACTCCATTTATGCATGTGCTCAGGGGCATCCTAGGTACTAAA >Felis_catus TAGTTTGCACTGTATGACTCTATTT-TATCT-----------AACATGCGTAAAAGGTCCCCACCATCAGTTC------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AAAAATATA---TTCT--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TGTTACTCCATGTATGCATGTGATTTTGGGGATCCTGGTCACTAAA >Sus_scrofa CTGTTTGTTCTATGTGATTCTCTTTTTTCCT-----------AACATACCTAAACACAT-CCACTCTCAACTC------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AAAGATGTA---TTCT--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TATTATTCCACTCATGTATGTGCTCACAGGCATCCTGGTCACCAAA >Tursiops_truncatus CTGGTC----TGTATGACTATTTTT-TTCCT-----------AATGTACCTAAAAAGTT-TCATCCTCAACTC------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AAAAGTATA---TTCT--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------CATTACTTCATTTATGCATGCACTCATGGGCATCCTGGTCACTAAA >Condylura_cristata CTGTTC----TGGAAGACTCTGCTT-ATTCT-----------GAGGC-------------CCACCATCAGCTC------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AAAATTGTA---TTCT--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------CCTTATTCCATTTATGCATGTGGTCATGGGTATCTTGGTCACTGAG >Sorex_araneus CTGTTT----GGCATGACTTTACTT-ATTCTAACCATAAAAAAATAGTCTAAAAAAGTC-CCATCATTTGCTC------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AAAATTAAA---TTC---------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------TTACTCCATTTTTACTTGTGATT------GTCTGGTTCAGTAAA >Homo_sapiens CTGTTCGTTCTGTATGATTTTATTC-TTTCT-----------AATATACCTAAACAGTC-CCACAATTAGCTC------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------ACAAATATA---TTCTCTTGCTTTTGATTGAGTATTTTCCCCAAAGTTCATGTGTTGGAAA CTTGATCCTCAATGCACAATGTTGAGAAGTCAGACCTTCATGAGATGATTAGATCATGAGGACTCTGCCCTCATGGGTAG ATAAATGCTGTTATCTCTGGGGTGGTTTAATGATCGGAGTAGGTTTGTTGTAGAAGTGAGTTCAGCCCTTTTGTTCTTTT TTGCTCTTCTGCCTTTTGCCACAAGATGACACAATAAGAAGTCCCTCTCAAGATGGGCTCCTTGATCTTGGACCTTCCAG CCTCCAGAAAAGTAAGAAATAAATATCTGTTCTTTATAAATTACCTAGTCACAAGTATTCTGTTACAGCAGCAGAAAATG GACTAAGATATCTCATTACTCAATTTATGCATGTAGTCATGGACATCCTGGCTACAAAA Horse126_LINE >L1MAB_EC -------------------------------------------------------------------------------- ----------------------------------------------TATATGTGGAATCTAAAAAAAAAAAACCAAA-CT CATAGAAACAGAGAATAGATTGGTGGTTGCCAGAGGCTGGGGG------GTGGGGGAAATAGGGAGAGGTTGGTCAAAGG GTACAAACTTTCAGTTATAAGATGAATAAGTTCTGGGGATGTAATGTACAGCATGGTGACTATAGTTAATAATACTGTAT TGTATATTTGAAAGTTGCTAAGAGAGTAGATCTTAAAAGTTCTCATCACAMAAAC------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------AAAAAAAAAATTTGTAACTATG TGAGGTGATGGATGTGTTAATTAACTTCATTGTGGTAATCATTTCACA------ATATATACATATATCAAATC--ATTA TGTTGTAC---ACCTTAAACATAATACAATGTTATATGTCAATTATA---TCTCAATAAA-------------ACTGAAA AAAAAAAA------------------------------------------------------------------------ -- >Canis_familiaris CAACTCTTCACTCAGT-CCCTTAG--ACTTAGCCATTCCCTTCCATAACTCTATGGCTTTGAATA------TAAACACAC -ACACACACACAC-----------------------------------------------------TTGTAACCAAA-CT CATAGCTACAGAGTACAGATTGGGAGTTGCCAGAG-CTAGCGG------GTGAACAAAATGGGTGAAGA-GTGTCTGAAG GTACAAACTTCCAGTTATAAAATAAATAAATTAAGGATGATTTAAGTACAGCATGTTGGCAACAATTAACAATAATGTAT TGCATATTTGAAAGATGGTAAAAA---AGATTCTAAAAATTTT-ATCACA------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------AGAAAAAAACATTGAAGCAATG TATGGTGACAGA--TTTTACATGACTT-------GTGATCATTTCACA------ATACATACAAATATCAAATCAAACTA TG-TGTAC---ACCTGAAAC-TAACAGAATGTCAGATATCAATTATAAAATAAAAATAAATAAATAAATAAATAAATAAA TAAATAAA---TAAATATTTCCCT---AAA-----CTCTCCTTGGGGCATCTGCAATCATCCTGAAAGCTCACTAATTCA TT >Felis_catus CAACTCTTCACT-AATTCCCTTAG--CCTTAGTCATTCACTTCCATAACTCTATAGCTTTTAATA-CA---CACCCACA- -------------------------------------------------------------------CGTAAGCAAA-CT CATAGATACAGAGAACAGATTGGGAGTTGCCAGAG-TC----------------------------AGG----------- ------------------------------------------------------------------TAACAATACTGTAT TGCATATTTGAAAATTGCTAAAAGAGTAGATCCTAAAAGTCTTCATCACATGAAAAAAAAAATTTTTTTATTTTTTAAAA AAAATTTTTTTTTCAACGTTTATTTATTTTTGGGACAGAGAGAGACAGAGCATGAACGGGGGAGGGGCAGAGAGAGAGGG AGACACAGAATCGGAAACAGGCTCCAGGCTCTGAGCCATCAACCCAGAGCCCGACGCGGGGCTCGAACTCACAGACCGCG AGATCGTGACCTGGCTGAAGTCGGACGCTTAACCGACTGCGCCACCCAGGCGCCCCGAAAAAAAAATTTTTGTAACAATG AATGTTGATGGA--TGTTAACTGGACTT------GAGATCATCTCCCA------ATATATACAAATATTCAATCAAACTA TGTTGTAC---ACCTGAAAT-TAATATAATGGTGGATGCCAATTATATAATCAAAATAAA----------------GAGA CAAATAAA---TAAATATCTTCCT---ACA-----CTCTCCTCGGGGCATCTGCAATCATCATGAAAGTTCGCTTATTCA TC >Manis_pentadactyla CAAGTCTT----------------------------------CCATATCTCTATACCTTGGATTG-TC---TAAATATAT -ATATACATATAATATATAATATATATATTTATATATACTTAT-----------------------ATTTAAATAAG-CT CATAGATACAGAGAACATAATGGTGGTTGCCAGAG-G-AGGGGTACACAGGATGCAAAATGGGTAAAGG-GGGTCAAAAG GTACAAACTTCCAGTCGTAA----AATAAATCATAACGATAAAGTGGACAGCATGGTGGCTATAGTTAACAATACTGAAT TGCGTATTTGAAAGTTGCTAGAAGTGTAGATCTTAAAAGTTCTCATCACC------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------AGAAAAATTATTACAACTACA TATAATGACAGA--TGTTAATTAAA---ATTGTGGTGATCATGTAGCAATATATATATATACAAATATCAAATC--ACTA TGTTGTAT---ACCTGGAAC-TAATATAACATTGTATGTCTATTTTAC--CTAAAATAAA-------------------- ----TAAA---TAAATATCTTCCT---ACA-----CTCTCCTCAGG-TATCTACAATCATCATGAAAGATCACTTACTCA CT >Equus_caballus CATGTCTTCCCTTAATTCCTTTAG--CCTTGACCATTAGCTCCCATATCTCCATGGC---------TC---TGAATATCT AATATATACATAA-----AATATAT--------------TTTT--------------------TTAAAAAAACCAAAGCT CATAGATACAGAGAACAGATGGGTGG-TGCCAGAG-GTAGGGG------GTGAGAAAAATGGGTGAAGG-GAGTCAAAAG GTACAAAATGCTGGTTATAAAATAAATAAGTCACAGGGATATAATGTACAGCATAGCAACTAAGGTTAA-AATACTGTAC CACATCTTTGAAAGTTGCTAAGACAGTAGTTCTTAAAAGTTCTCATCACAG----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------GAAAAAAAATTCTGTAACTATG TGTGGTGATAGA--TGTTGCCTAGACTTATTGTGATGATCATTTTACT------GAATAAACAAATACTGAGTC--ATTA TGTTGGACACTACCTGAAAC-TCATATAATGCTGTATGTCAATTGTA---CCTCAATAAA-------------------- CACATAAA---TAAATATCTTTCT---ACA-----CTCTCCTTAAG-CATCTGCAATCATCATGAAAGCTCACTTACTCA TT >Ceratotherium_simum CAAGTCTTTCCTTAATTCCCTTAG--CCTTGACCATTAGCTCCCATATCTCTATAGCTTTGATTG-TC---ACAATATAT AAAATACGTATAA-----AATGTAT--------------TTTT-----------------------TTGAAACCAGC-CT CACAGATAGACAGAACAGATTGGTGATTGCCAGAG-GTAGGGG-------TCGGTGAAATGGGTGCAGG-GGGTCAAAAT GTGCACACTTCCGTTTATAACATAAATAAGTGATGGGGATGTAATGTACAGCATGGCAACTATGGTTGATAATACTGTAT TGCATATGTGAAATTTGCTAAGAGAGTAGATCTTAAAAGTTCTCATCAC------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------AAGAAAAAAATCGTAAC---- TGTGGTGATAAA--TGTTAACTGGACTTATTGTGGTGATCATTTTGTA------AAATATACAAGTCTCGAATCA---TA TGTTGTAT---ATATGAAAC-TAATATAATGTTATATGTCAATTATA---CCTCAATAAA-------------------- -----------TAAATATCTTTCT---ACA-----CTCTCCTTAGG-CGTCTGCAATCATCATGAAAATTCACTTACTCA TT >Sus_scrofa CACATCTTCCCTTAAGCCC--TGG--CCTTGACTATT-----CCATTTCTCTATAGCTTTGATTA-CC---CAAGTTTCT ---------------------------------------TCCA------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------ATA-----CTCTCCTTAGG-TATCTGCAATCATCAGGAAAGTCCACTTACTCG TG >Bos_taurus CA-GTCTTCCCTTAATGCCCTTGA--CCTTGAACATT-----CTGAATTTCTATAGCTTTA-----TC---TAAATATCT ---------------------------------------TCTT------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------ACA-----CTCTCCCCCAG-CTTCTGCAATTGTCACAAAAGTTCACTTACTCA TT >Myotis_myotis AAAGCCTTCCCTTTATTCCCATGG--CCTGGACCATTAGCTTCCTTGG-----TAGCTTTTTTTTGTC---TAAATATGT ----------------------------------------CCT------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------ACA-----CTCTGTTTAAT-GAGTTACAGACATAAAGAAAGTTTACTTACTCA TT >Rousettus_aegyptiacus CAAGTCTTCTCTTAATTCCCTTGG--CCTTGGCCACTAGCC------------AAGCTTCATTTC-TC---TAAATATTT ---------------------------------------TTCT------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------ACA-----CTCTCCTTAAA-CATCTGCAATCATCATGAAAGT----TTATTCA TT >Condylura_cristata CAAGTCTTCCATTAATTCCCTTAG--TCTTGACCACTAGCTTTCAAATCTCTATAGCTTTAATTA-TC---TAACCATTT ---------------------------------------TCCT------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------ACA-----GTCTCCATAAG-CATCTGCA-TAATCATGAAAGTTTACTTACTCA TC >Solenodon_paradoxus CAAGTCTTCCATTAATTTCTTTAA--CCTTGACAATTAGCTTCCATATCTCTATGGCTTTGATTG-CC---TAAATAACT ---------------------------------------TCCC------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------ATACGACATTCTTCTTAGG-CATCTGCAATCATCATAAAAGTTCACT-ACTCA TT >Homo_sapiens CAAGTCTTCCCTTAATTGCCTTATACCTTTCACTATTAGCTTCTATACCTCTATAGCTTTGATTG-CC---TTAATATCT ---------------------------------------TCCT------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------ATA-----CTCTATTCAGG-CACC--------TCATAAAAGTTTACTT----A TT Horse127_LINE >L1MAB_EC ---------------------------------------------------------------------------TCATA GAAACAGAGAATAGATTGGTGGTTGCCAGAGGCTGGGGGGTGGGGG----------AAATAGGGAGAGGTTGGTCAAAGG GTACAAACTTTCAGTTA---------------------TAAGATGAATAAGTTCTGGGGATGTAATGTACAGCATGGTGA CTATAGTTAATAATACTGTATTGTATATTTGAAAGTT-------GCTAAGAGAGTAGATCTTAAAAGTTCTCATCACAMA AACAAAAAAAAAATTTGTAACTATGTGAGGTGATGGATGTGTTAATTAACTTCATTGTGGTAATCATTTCACAATATATA CATATATCAAATCATTATGTTGTACACCTTAAACATAATACAATGTTATATGTCAATTATATCTCAATAAAACTGAAAAA AAAAAA-------------------------------------------------------------------------- -------- >Canis_familiaris TTTCCTACAACCTCCACTTGTGGAAGTACA----ACCCAACCTTTAAGATCCAG---TGAA--GT-GATCTC-------- ---ACAGAAAACCCACTGGTGGCTGCTACAGGT---GGGGTAAGGGTGGGGGGTGCAAAATGGGTAAAAGATGTCAAAAG GTTCAAACTTCCCGCTAGAAAATAAATAAGTCAAAAATTAAAATAAATAAGTCATGGGGATGTCATGTACAACATGACGA CTATAGTTCATAATGCTGTATTGCATATTCGAAAGTT-------ACTAAGAGAGAGGATCTTAAAAGTTCGCATCACA-- ---AGAAAAAATATACTTAACTATGTGTGCTGATGGC--TGTTAACAAGACTTATGGTGGTGATCGTTTTGCAATATATC CAAAGATTGAATCATTATGTTGTACACCTGAAAC-TAATATAA-AATATATGTCAATTATACCTCAGTTTAT-----AAA AAAG-----TG-GAAGTCTATCTC---CTCTAAGAAAAAAAA----TTTC-CCAATTCTCTCTTTATGC-CCCACTATCC ---AGTCT >Felis_catus TTTCCTACAACCTCCACGTGTGGAAGTACA----ACCCAGCCTTTAAGGTTCAG---TGAA--GT-GACCTC-------- ---GCAGAACACACACTGGTGG-TGCTGGGCAT---GGGGTGGGGG--------------TGGGTGAAAGAGGTCAAAGG TTTCAAACTTCCAGTTA---------------------TAAAATAAGTAAGTCGTGGGGATATCATGTACAGCACTGTGA CTATAGTTAGTAACACTGTATTGCATATCTG-AAGTTATATGAAGCTAAGAGAGAAGATCTGACAAATTCTCATCACA-- ---AGAAAAAAGA-CTTTAACTATGTGTACTGAAGGA--TGTTAATTAGACTTACTGTGGTGATCATTCTACAACATATA CATATATTGAATCATTACGTTGTGCATCTGAAAC-TAATGTAATGCTGTATATCAATGATATCTCAATTTTCAAAAAAAA AAAG-----TGCAAAGTCTATCTC---TCCTTAAAAAAAAAA----TCTC-CCAATTC--TTTTTATGC-CCCACTATAC ---AGTCT >Manis_pentadactyla TCTGCTACAGTCTCCATTTCTAGAAGTACAACCCACCCATCCCTTATGGGCCAT---TGAA--GTCTACTGC-------- ------AAGAACAGACTGGTGGCTCTCAGAGGCCGGGGGTGAGGAGCAGAT-----GAAATGGG-GAAAGGGGTCAGAAG GTGCAAATTCCCAGTAA---------------------TAA----AATAAGTCATGACGATGCAAGGTACAGCATGGTGG CTATAGTTAATAATATTGCACTGCATCTTTGAAAGTT-------GCTAAAAGAGCAGATCTTAATAGCTCTCATCACA-- ---AGAAAAAAT--GTGTAACT--GCGTGGTAACAGA--TTGTAACTAGTCTTATTGCAGTGATCATTTTGCAAAACATA CATACATGAGATCATTATATTGTACACCTGAAAC-TAAC--AATGCTGTATGTCAATTATACCTCAATTCAA--AGAAAG AAAG-----TGAAAAGCCTATCTC---CTCTAAGAAAAAAAAAATGTTTC-CCAATTCTCTTTTTATGT-CCCACTATTC ---CTTCT >Equus_caballus TTTACTACAATATCCATTTGTGGACGTAAA----ACCCATCATTTAAGGCCCAT---TGGA--GTCTACCTC-------- ---AGAGAGCACAGATTGGTGGTTGCCTAAAGC---GGCAGTGGGGAGGGTAAGGCATAATGGCTGAAGGAGATCAAAAG GTACAAATTTTCAGTTA---------------------GAAGATAAATAAGTCATGTAGATATAATATACAGCATGGTGA CTATAGTTAATAATACTGCATTGCATATTTGAAAGTT-------GCTAAGAGAACAGATCTTAAAAGTTCTCATCA---- --------------TTGTAACTATCTGTGGTGATGGA--TGTTAAGTGGACTTATTATGGTGATCATTTTGTAATACATA CACACATCAAATCGTTATGTTGTACACCTGAAAC-TAAT---ATGCCATATGTCAATTATACCTCAATAAAA-GAAAAAG AAAA-----TGAAATGTCTATCTC---CTCTAAG--AAAGATTTTTTTTC-TCAATTCTCTTTTTATG--CCCACTATCC GGAATTCT >Ceratotherium_simum TTTACTACAATCTCCATTTGTGAAAGTACA----ACCCATCGTTTAAGGCCCAT---TGGAAAGTCTATCTC-------- ---ACAGAAAACAGATGGGTGGTTGCCAGAGGT----GGGGGTGGGAGGATAAGGCAAAATGGGTGAAGGGGGTCAAAAG GTACAAATTTTCAGTTA---------------------GAAGATACATAAGTCATGGGGATATAATGTACAAGATGGTGA CTATAGTTAATAACATTGTATTGCATATTTGCAAGTT-------GCTAAGAGAGTATATCTTAAAAGTTCTCATCATA-- ---AGAAAAAAA--TTGTAACTACCTGTGGTGATGGA--TGTTAACTAGACTTATTATGGTGATCATTTTGTGATATAAA CATACATCAAATCATTATGTTGTACACCTGAAAC-TAAT--------ATATGTCAATTATACCTCAACAAAA-GAAAAAG AAAG-----TGAAAAGTCTATCTC---CTCTAAG---GAAATTTTTTTTC-TCAATTCTCTTTCTATGC-CCCACTATCC ---ATTCT >Desmodus_rotundus TTTCCTACAATCTCCATTTATGGAAGTACA----AGCCATC-TTTAAGGCCCCC---TGAAAAGTAGGTCTC-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------TGCTAAG---AAGAAGTATTTCC-CCGATTCTCTTTTTGTGC-CCTACTCTCC ---ATTCT >Pteropus_vampyrus TTTCTCACAATCTCCATTTATGGAATTACA----ACCCATCCTTTAAGGCCCAT---TGAAAAGTCTCTTTC-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------CTTTAAG---AAGAATTCTTTTC-CCAATTCTCTTTTTATGC-CCCACTATCC ---ATTCT >Sus_scrofa TGTACTACACTCTCCATGTAGAGAAGGACA----ACCCACACTTTATGGCCCAT---TGAAGAATCTTCCTC-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------TGCTCAG---AAGAATTATTTTCTCCAATTTTCCTTTTATGC-CCCACTGTCC ---ATTCT >Bos_taurus TTCACTACAACTTTCATGTACAGAAGGACA----ATCCACCCTTTATGGCTCAT---TGAAAAGTCTACCTT-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------TCCCGAG---AAGAATAATTCCC-CCAATTTGTTTTTTATG--CCCACTATCC ---ATTCT >Condylura_cristata TTAACTGTAATCTCTATTTACAGAAGTACA----GTCTATATTTTCAGACCCAA---TGAAAAGGCTGCCTC-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------CTACAAG---AAGAATACATTTT-CCACCTCT-TTTTTATGT-CCCACTGTCC ---AACCT >Sorex_araneus CTT-CCCCAATC----------------------ATCCATCTTTTGAGACCCAC---TAAAAAGTCTGCTTC-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------CTCCGAG------AACTATCTTT-CCATTTCTCTTTGAATCCTCCCTTTGCCC ACTGATCT >Homo_sapiens CTTACTACAATCTCTATTTACGGAAATATA--------------TAAGGTCCAT---TGAAAAGTCTGTCTC-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------TCCCAAG------AATTCTTTTC-CCAATTCTCTGTTTATAC-CCCACCATTC ---ATTCT Horse130_LINE >L1MAB_EC -------------------------------------------------------------------------------- ----------------------------TTTTTTTTTTTCAGTTTTATTGAGATATAATTGACATATAACATTGTATTAT GTTTAAGGTGTAC-AACATAATGATTTGATATATGTATATATTGTGAAA------------------------------- -----------------------------------------------------TGATTACCACAATGAAGTTAATTAACA CATCCATCACCTC------------------------------------------------------------------- ---------------------------- >Canis_familiaris AAAC-------TAAT----------------------GAATAAA----AGTTAAATTCATTTAATAG----TATTGAATA AATTA---TTCATATTTCATAAATA----------------TTTTTATTGGGGTATAATTGATATATAACATTATACTG- GACTCAGGCGTAT-AACATAATGATTCTATACTTGTATATATTGCAGATTGATTACCATGAGTCTGGTTAACATCCGTAT TCAGTAAATTTATTGAATGTCAGAAATATATTGAATATCAGAAATATATTGAGTGATTACTATAAGAAGTCTAGTTAACA ----------------TTGATATTCAGTAAGTA---TATTGACTGTAAAAATG-TGTACACCATTTTTAC---------- -------CATTGGCATTCTGAGAAAATA >Felis_catus GAACATAAGTATAATT---------------------GAATAAA----AGTTCAATTCCTTTAATAG----TATTGAATA AATCC---TTTATATTCCATAAATA----------------TTTTTATCGAGGTATAACTAATACAT-----TATATTA- GATTCAGATGTATAAACATAATGATTTGATATTTGTGTATATTGCAAAA------------------------------- -----------------------------------------------------TGAATACCTTGGTAAGTCTAGTTAACA ----------------CTGATACTCAATAAATA---TATTGAAT----AAATG-TATAAACTGTTTCTAC---------- -------CATTGGCATTCTCAGAAAATA >Manis_pentadactyla NNNNNNNNNNNNNNNN---------------------NNNNNNN----NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNN---NNNNNNNNNNNNNNNNN----------------NNNNNNNNNNNNNNNNNNNNNNATATAACACTATATTA- GTTTCAGGTACAC-GAAATAGTGATTCAGCATTTGAATATATTACAAAA------------------------------- -----------------------------------------------------TGATCACCACAGTAAGTCTAGTAAACA T---------------CTAATATTCAATGAATT---TATTGAAT----AAATG-T------TATTTTTAC---------- -------CATTGGCATTCTTAGAAAATA >Equus_caballus GAACATAAACATAATT---------------------GAATAAA----AGTTCAGT---TTCTTTAGTTAATATTTAATA AATCA---TTCATATTCTATAAATA----------------TTTTTATTGTGGTATTATCGACATAT-------TGTTA- GATTCAAGTGTAC-AATATAAGGATTTGATATTTGT---------GAAA------------------------------- -----------------------------------------------------TGATCACAAT----AATCTAGTTAACA T---------------CCGATATTC--TAAATA---CATTAAAT----AAATG-TATAAATTATTTTTGC---------- -------CAATGGCATTCT-AGAAAACA >Ceratotherium_simum GAACATAAATATAATT---------------------GAATAAA----AGTTCGATTTCTTTAATAGTCAATACTTAATA AATCA---TTCATATTCTATAATTA----------------TTTTTATTGTGGTATTATTGACATATAACACTGTATTA- GATTCAGGTGTAC-AATTTAATGATTCGGTATTTGTATATATTGTGAAA------------------------------- -----------------------------------------------------TGATCACCGTAAT-AATCTAGTTAACA T---------------TAGATATTCGGTAAATA---CATTGACT----AAATG-TATAAAATATTTTTAC---------- -------CATTGGCATTCTTAGAAAATA >Sus_scrofa TAACATTAATACAGTG---------------------GGGTAAA----AGTTCA-----TTTTATAGTTAATATTTAGTA AATCA--------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------TTCATATTCAGTAAG-----CATTGAAT----AAGTA-TGTAAGTTATTATTATTATTTTTTTT TTACCAACATTGGCATTCTTAGAGAATA >Bos_taurus CGACATAAATATAAGT---------------------GGCTGAA----AGTTTGATTAATTACATAGTTAATATTTAAT- ---CA--------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------TTCACATTCAATAAACA---CATTGAAT----AGGTG-CATGTA--ATTTTTAC---------- -------CATTAGCATCCTTAGAAAAGC >Myotis_myotis CAACATAAACTT-------------------------GGATGAA----AGTGCA-----------GTTTGCACTTTAAAA A--CT--------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------CGG-TGTTCAAGAAACA---TATTGATG----ACATG---TATGCTATTTTCAG---------- -------CACC--TTTGCTGGGAAAATG >Rousettus_aegyptiacus GAACGTGAATATAATC---------------------GGGTAAA----GGTATAGTTCCTTTCAGACTCCATATTTAATC ACCCG--------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------CTCCTGCTCAATAAACA---CACCGC------ACATG-TGGATGTGATTGTTAC---------- -------TTCTGGCGTTCGTAGGACATA >Condylura_cristata GAACATAAATGTACTT---------------------AAATAAAATTCAGTTCA-------CCATGCACAGTATTTAATA AATCG--------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------TTCCTATTCAATGCACA---TAGTTAAT----ACCTGCTTTTTATTACCCTCAC---------- -------CAGTGACTTTCTTAGAAAACC >Solenodon_paradoxus GAATATACATGCAATTGAAGGCAATTTGAACGCAGTCGAATGCA----GTTTCAGTTCATTTTATATTTAGTATTTAATA AATTA--------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------TCTACATTCAGTA-ACA----ATG---------AATA-AATAATTTTTTTTTAC---------- -------CATTGACAGTCTTAGAAAATA >Homo_sapiens GAACATAAATATAATT---------------------GAATAAA----AGTTCA-----TTTCATATTCATTATTCAACA AATCA--------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------TTCATATTGAATAAATA---CATTGCAT----AAATG-TATA-GCTATTTTTAC---------- -------CATTGGCGTTCTTAAAAAATA Horse133_LINE >L1MAB_EC -------------------------------------------------------------------------------- --------TTTTTTTTTTTCAGTTTTATTGAGATATAATTGACAT-ATAACATTGTATTATGTTTAAGGTGTACAACATA ATGATTTGATATATGTATATATTGTGAAATGATTACCACAATGAAGTTAATTAACACATCCATCACCTCACATAGTTAC- ----------------AAATTTTTTTTTTGTTTKTGTGATGAGAACTTTTAAGATCTACTCTCTTAGCAACTTTCAAATA TACAATACAGTATTATTAACTATAGTCACCATGCTGTACATTACATCCCCAGAACTTATTCATCTTATAACTGAAAGTTT GTACCCTTTGACCAACCTCTCCCTATTTCCCCCACCCC-----CCAGCCTCTGGCAACCACCAATCTATTCTCTGTTTCT ATGAGTTTGGTTTTTT-------TTTTTTAGATTCCACATATAAGTGAGATCATGCAGTATTTGTCTTTCTCTGTCTGAC TTATTTCACTTAGCATAATGCCCTCAAGGTTCCATCCATGTTGTCACAAATGGCAGGATTTCCTTCTTTTCTTTTTTATG GCTGAATAATATTCCAT------------------------------TGTATATATATACCACATTTTCTTTATCCATTC ATCCA---TCAATGGACACTTAGGTTGTTTCC-ATRTCTTGGCTATTGTGAATAATGCTGCAATGAACATGGGAGTGC-A GA---TATCTCTTCAAGATTAGTGATTTCATTTCCTTTAGGATATATACCCAGAAGTGGGATTGCTGGATCATATGGTAG TTCTATTTTTAATTTTTTGAGGAACCTCCATACTGTTTTCCATAGTGGCTGCACCAATTTACATTCCCACCAACAGTGCA CAAGGGTTCCCTTTTCTCCACATCCTCGCCAACACTTGTTATCTCTTGTCTTTTTGATAATAGCCATTCTAACAGGTGTG AGGTGATATCTCATTGTGGTTTTGATTTGCATTTCCCTGATGATTAGTGATGTTGAGCACCTTTTCATGTACCTGTTGGC CATTTGTAT-GTCTTCTTTGGAAAAATGTCTATTCAGATCCTCTGCCCATTTTTTAATTGGATTATTTGGTTTTTTTGCT ATTGAGTTGTATGAGTTCCTTATATAT-----------------------------------TTTGGATATTAACCCCTT ATCAGATATATGGTTTGCAAATATTTTCTCCCATTCCATAGGTTGCCTTTTCATTTTGTTGATGG-------------TT TCCTTTGCTGTGCAGAAGCTTTTTAGTTTGATGTAGTCCCACTTGTTTATTTTTGCTTTTGTTGCCTTTGCTTTTGGTGT CAAATCCAAAAAATCATTGCCAAGACCAATGTCAAGGAGCTT-AYCCCCTATGTTTTCTTCTAGGAGTTTTATGGTTTCA GGTCTTACATTCAAGTCTTTAATCCATTTTGAGTTGATTTT--------------------------------------- ----------------------------------- >Equus_caballus TAATCTATAAGAAG----------------TCATAGTATAATAATGTGTTAAACATTATTTTTGTC---TGACAGGATTT TTA--------------------------------------ACAT-ACATTACTGTA-TAAGTTTAAGGTGTACAGCATG ATGGTTTGATTTA--CACTTATTGTGAAATGATTACCACTAATTGTTTAGTTA--ATATCTATCTTCTCATATAGATACA GTAAAAAGAAAAGAAAAAATATTTCCCCT-----TGAGATGAGAACACTTAGGATCTACTCTCTTAACAACTTTCTTATA TATCGTACAGCAGCGTTGACTATAGACATCATGTTATACATTACATCCCTAGTACTTATTTATTTTGTAACTGGAAGTTT TTACCTTTTGACCACCTTCCTCCAATCCCCCCTCCCTTTACCTTCTGCCTCAGGTAACCACAAAACTGGTCTCTTTTTCT ACTAGTCTGGTGTTTTGTTTTGTTTTTTCAGATTCCCCATATAAGTGAGATCAAACAGTATTTGTC-TTCTCTATCTGAC TTATTTCAGTTAGCATAATGCCTTCAA-GCTCCACCCATGTTGTCACAAGTGGTAGGATTTCCTTGTTT--TTTTTTATG GCTGAATAATATTCCATTTTGTGTGTGTGTGTGTGTGTGTGCGTATGTGTGTGTGTACACCACAATTTCTTTATCCATTC ACCCACTGCTGCTGGACACTTAAGTGGTTTCCAACATCTTGGCTATTGTAAATAATGCTGCTATGAACATGAGGGTCC-A GA---TATATTTTTGA-ATTAGTT-TTTCATTTCCTTT-GGATATATTTCCAGAAGTGGAATTGCTAGATCATAGAGTAG TTCTATTCGTAATTTTTTGAGGACCCTCCATACTGTTTTCCATAGTGGCTGCACCAATTTACAATCCTACCAATGGTGCA CAAATGTTCCCTTTTCTCCACTTCCACACCAGCCTTTGT--TCTCTTGTCTTTCTGATGATGGCCATTCTAACAGGCACG AGGTGATATCTCACTGTGGTTTCAATTTGCGTTTCTCTTATGACTAGTGATGCTGAGCATCTTTTCATGTACCTGTTGGC CATTCATATCTTTTTTTTTGGAAAAATGTCTATTCAGGTTCCTTGTCCATTTTTAGATTGCATCATTTGGGTTTTTTGCT ATTGAGTTATATTAGTTCTTTATAAAT-----------------------------------TTTAGACATTAACCTCTT ATCAGATATATGGTTTGCAAATATTTTTCCCCATTTCATAGGTTGTCTTTTTATTTTATTGA----------------TT TCTTTTGCTGTGCAGAAGCTTCTTAGTTTGATATAGTCCCATTTGTTTATTTTTTATTTTGCGGCTTATGTTTTACATGT GATTTCCAAAAAATCATTACCAAGACCCATGCCAAGGTGTTTTTTTTCCTTTGTTTTCTTCTACTAGTTTCATAGTTTCA GGTCTTACATTTAAGCCTTTATTTCAT-----------------TGACAGTAGCATTTTTA---TGACATAATTG-AATC AAAGTCTTCCATTAAGCAACTGATTAAATCATTAG >Tapirus_indicus CAATCTACAAGAAG----------------CCATAGTATAATAATGTGTTAAATATAATTTTTGTC---TGACAGGATTT TTG--------------------------------------ACATAACATCACTGTA-TAAGTTTAAGGTGTACAGCATG ATGGTTTGATTTA--CACATATTACGAAATGATTACCACAATAAGTTTAGTTA--ATATCTATCATCTCATATAGATACA GTAAAAAGAAAAGAAAAAAATTTCTCCTT------GCGATGAGAACACTTAGGATCTACTCTCTTAAAAACTTTATTATA TACCATACAGCCGTATTGACT-TAGTCACCATGTTGTACATTATGTCTCTGGTACTTATTTATTTTATAACTGGAAATTT TTACATTTTGACCACTTTCCTCCAATTCCCCCTCTCCA---------CTTCAGGAAACCACAAATCTGATCTCTTTTTCC ATGAGTCTGGTTTTTGGGGTT--TTTTTCAGATTCCACATATAAGTGAGATCATACAGTATTTGTCTTTC----TCTGAC TTATTTCACTTAGCATGATGCCTTCAA-GCTCCATCCATGTTGTCTCAAATGGTAGGATTGCCTTGA----TTTTTTATG GCTGAATAATATTCCAT------------------------------TGTATATATATACCACGATTTCTTTATCCATTC ATCCA---CTGATGGACAC--AGGTTGTTTCCAATGTCTTGGCTATTGTAAATAATGCTGCTATGAACATGGGGGTGC-A GA---TATCTTTTTGA-GTTAGTT-TTTCATTTCCTTT-GGATATATTCCCAGCAGTGGAATTGCTGGATGATGTGGTAG TTCTATTTTTGATTTTTTGAGGAAACTCCATAGTGTTTTCCATAGTGCCTATCCCAATATACAATCCCATCAACAGTGCA CAAGTATTCCCTTTTCTCCACATCCACACCAACATTTGT--CCCCTTGTCTTTNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNN-----------------NNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Myotis_myotis NNNNNNNNNNNNNN----------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNN NNN--------------------------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCATGAGTGAGTGAGATCATGTGGTGTTTTTCCTTCATTGACTGGC TTATTTCACTTAGCATAATGCTCTCCA-GTTCCATCCATGCCGTTGCAAATGGTAAGAGTTCCTTA-----TTTTTTACA GCAGCATAGTATTCCAT------------------------------CGTGTAGATGTACCACAGTTTTCTAATCCATTC ATCTA---CTGATGGGCACTTAGGCTGTTTCC-AGATCTTAGCTATGGTGAATTGTGCTGCTATGAACATATGGGTGC-A TA---TATCCTTTATG-ATTAGTGTTTCTGGTTTCTTG-GGATATATTCCTAGAAGTGGGATCACAGGGTCAAATGGGAG TTCCATTTTTAGTTTTTTGAGGAAACTCCATACTGTCTTCCATAGTGGCTGCACCAGTCTGCATTCCCACCAGCAGTGCA CGAGTGTTCCTTTTTCTCCACATCCTCTCCAGCACTTGTCGTTTGTGGATTTGTTGATGATAGCCATTCTGACAGGTGTG AGATGGTACCTCATTGTTGTTTTGATTTGCATTTCTCAGATGATTAGTGACTTTGAGCAAGTTTTCATATGTCTCTTGGC TTTCTGAAT-GTCCTCTTTTGAAAGGTGTCTATTTAGGTCTTTTGCCCATTTTT-GATTGGATTGTTTATCTTCCTT-TT GTTAAGTTGTATGAGTTCCCTATAAATTTTGGAGATTAAGCCCTGTATGAGTTCTTTATATATTTGGATATTAATCCATA ATAAGATATATGTTTTGCAAATG-TTTCTTCCATTCTATTGATTGTCTTTTCATCCTGTTGATTTTTCTTTTCCTTTCTT TTTTTTGCTGTGCAGAAGCTTTTTAGTTTGATTCAGTCCCACTTGTTAATTTTTTATTTTGTTGCTT---------GTAT GGTTTCCAAAAATTCATTACCAAAACCCATGTCAAGGAGTTT--------TTGTTTCC--CTAGGAGTTTCATCCTTTCA GGTCTCACCTTTAAATCTTCAATCCAC-----------------TGACAGTAGAATTTTTA---TGACATAGTTG-AATC TAAGTATTTCATTAAGCAACTAATTAAATCATTAA >Rousettus_aegyptiacus NNNNNNNNNNNNNN----------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---NNNNNNNNNNN NNN--------------------------------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATCTTGGTTATTGTAAATAATG-TCCTATGAACATGGAGGTACTT GAAAATATCTTTTCAA-GTTAGTGTTTTTCTTTTCTT--GGATATATTCTCAGAAGTAAAATTTTTA------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------TAATTATTTTTTTCATTTCACAAGTGGTCTTTTCAATTTGTTGATGG-------------TT TATTTTGCTATGCAGAAGCTTTATACATTGATGTAGTCCTACTTGGTTATTTTT-ATTT-GTTGTTTGTGCTTTAGGTCT TATTTCCAAAA--TCATTATCAAGACCTATGTCAAGAAACTTTT-CTTCTATGTTTTCTTCTAAGAGTTTTATCATTTTG GGTCTTACATTTATGTCTTTAATCCAT-----------------TGACAGTAGAATTTTTA---TAACACCATTG-AATC TAAG----TCCGTAAATAATTAATTAAATCATTTG >Canis_familiaris CAACCCATAAGAA------------------CATAGGAGAATAATGTGTTAAATATTATTTTTGTC-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TGG---TAGAATTTTTG---CAACATGGTTGGAACT TAAGTATTTCATTAAGCATCTGATT-AATCATTAA >Felis_catus CAACCCATAAGAAG----------------CCATAGGAGAATAATGTGTTAAAAATTACTTTTGCC-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TGA---TAGAATTTTTA---TGACATAATTGAAATA TAATTATTTCATTAAGCATTTGATTAAATCATTAG >Manis_pentadactyla TAACCCATAAAAAA----------------CCATGGGAGAATAATGTGTTAAATATTATTTTTGTC-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TG-CA---GGATTTTTA---TGACATAATTCAATCG AAATTATTTCATTAAATAACTGATTAAATCATTAG >Sus_scrofa TAATCTGTAAGAAA----------------CCATAGGAGAATAATGTGCTAAATATTATTTTTGCC-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------AGACA---GAATTTTTA---TGACATTACTG-AATT TAAGTATTTCATTAAGCACCTGATTAAATCATTAG >Bos_taurus TAATCTATAAGAAG-----------------CCTTGGAGAATAATGTGCTAAACCTTATTTTTGTC-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------AGA-----AAATTTTTA---TGACATAAT------- --TGAATTTCATTAAGTGCTTGATTAAATCATTAG >Condylura_cristata TTATCTACTGTACA-----------------CATAGAAGAAT-ATGTGT------TCATTTTTTTC-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TGACA----GATTTTTC---TGACACAAT-----TT AATGTATTTCATTAAGCACCTTATTAAACCATCAA >Solenodon_paradoxus CAGTTTATAAGAAG----------------CCATATGAAAGTAATGTGTTAAATATGTTTTTTGTC-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TGACAAAAGGATTTTTA---TGACATAATTG----- --AATATTTTATTAAGCAGCTAACTAAANNNNNNN >Homo_sapiens TAACCTATTAGGAGAACAAAGAATTCTCTTAATAAGGAGAATAATGTTTTAAATAT--TTTTTGTG-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TGACACTAGGATTTTTA---TTACA--ATTT-AATA TAAATACTTCATTATGTACATCATTAAATTATGAG Horse135_LINE >L1MAB_EC -------------------------------------------------------------------------------- ----CAATATATACATATATCAAATCATTATGTTGTA-----CACCTTAAACATAATACAATGTTATATGTCAATTATAT CTCAATAAAACTGAAAAAAAAAAA-------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --- >Equus_caballus TTT-CCATAGCTGTTGCTCAG-TAGTGAGCATGTTTTACTT--------AGAGACTAAC-TTT---AAGATGGTAAGTGT T------------CAAATATCAAATCATTATGTTGTA-----TACCTGAAAC-TAATATAATGTTGTATGTCAGTTATA- CTCAGTTAAAAA---------------AA-ATGGCAAGTGTT---GA---AACTGTAACA-TTTTCAACATTAAGTTAAA TATCTTTCTGTT-------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------ATATA CCT >Ceratotherium_simum TTT-CCATAGCTGTTGCTCAG-TAGTGAGCATGTTTTACTT--------AGAGACTAAC-TGT---AAGATGGCAGGTGT T------------CAAATATCAAATCATTATGTTGTA-----CACCTGAAAC-TAA----------TATGTCAATTATAC CTTAATTAAAAA---------------AA-ATGGCAGGTGTT---GA---AACTATAACAGTTTCAAACATTAAGTTAAA TATTTTTCTATT-------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------ATGATATA CCT >Myotis_myotis TTT-CCACAGCTGTTGCTCAG-TGGTGAACATGTTTTACTC--------AGAGAATAAC-TTT---TAGATGATATGTGT T------------CTAATATTGAATCATTACGTTGTAATGATTATCTGAAAC-TAATATAATGTTGTATGCCAATTATAC CTCAATTAAAAA---------------AATATGGG-AGTGTT---AA---AGCTATAACAATTTTGACC--TAATCTAAG T-TCTGTCTTTT-------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------ATGTA AAA >Rhinolophus_ferrumequinum TTT-CCATAGCTATTGCTCAG-TGGTGAGCATGTTTTACTC--------AGAGACTAAC-TTT---TAGATGGCAAGTCT T------------GTAATATCGAATCATTATGTTGTA-----CATCTGAAAC-AAATATAATGTTGCATGTCAGTTACAC CTCAATTTAAAAAAA------------AGGATGGCAACTGTT----A---AGCAATAACAATTTNNNNNNNNNNNNNNNN NNNNNNNNNNNN-------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------NNNNNNNN NNN >Canis_familiaris TTTCCCATAGCTGTTGCTCAG-TGGTAAGCATGTTTTACTC--------AGAAACTAAC-TTT----------------- -------------------------------------------------------------------------------- ---------------------------AATGTGGCAAGTGTT---GC---AGCTGTAACAATTTTAAATGTTAGGTTAAA TATCTTTCTGTTGGGATCCCTGGGTGGCGCAGCGGTTTGGCGCCTGCCTTTGGCCCAGGGCGCGATCCTGGAGACCCGGG ATCGAATCCCACATCGGGCTCTCGGTGCATGGAGCCTGCTTCTCCCTCTGCCTGTGTCTCTGCCTCTCTCTCTCTCTCTC TGTGTGACTATCATAAATAAATAAAAATTAAAAAAAAAATTAAAAAAAAAATAAATATCTTTCTGTTATGGTAT-ATATA CCT >Felis_catus TTTCCCACAGCTGTTGCTCAG-AGGTAAGTGTGTTTTACTC--------AGAGACTAAC-TTT----------------- -------------------------------------------------------------------------------- ---------------------------AACATGGCAAGTGTT---GATGAAGCTGTAACAATTTTAAATGTTAGGTTAAA TATTTTTCTGTC-------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------ATGATATA CCT >Manis_pentadactyla TTT-CCATAGCTATTGCTTAGTTGGTGAACATGTTTTACTT--------AGAGGCTAACTTTT----------------- -------------------------------------------------------------------------------- ---------------------------AAGATGTCAAGTGGT---GA---AGCTGTAACAATTTTAAAATTTAGATTAAA TGTCTTTCTGTT-------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------ATGGTATA CCT >Sus_scrofa TTT-CCACAGCTGTTGCTCAT-TGTCGAGCATGTTTTACTC--------AGAGGCTGCC-TTT----------------- -------------------------------------------------------------------------------- ---------------------------AAGATGGCAGGTGTT---GA---CGCTGTAACAATTTCAAACATTAAGTTAAA TACTTTTCTATT-------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------TTGGTGTA CCT >Bos_taurus TTT-CCATAGGTGTTGCTGTATTGAGCAACACCTTTAACCTGGTGTTAAAGAGACTGCC-TTT----------------- -------------------------------------------------------------------------------- ---------------------------AACCTGGCAAATGTT---GA---AGCTGTAACAATTTCAAACATTAGGTTAAA TATTTTTCTATT-------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------ATGGCATA GCT >Scalopus_aquaticus TTT-CCATAGCTATTGCACAG-TGGCGAACATGTTTTACTC--------AG------TC-TTT----------------- -------------------------------------------------------------------------------- ---------------------------AGGATGGCAAGTAGA---TA---AGTTGTAACAATTTTAAACATTAGATTAAA CATTTTTCTATT-------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------ATAG---G CCT >Sorex_araneus TTT-ATATAGCTGTTGCTAAG-TGGAAAGTGTGTTTTGCTT--------AGAGTCTTAAATTT----------------- -------------------------------------------------------------------------------- ---------------------------AAAATGACTAGTATT---GA---ACCTGTGATGATTTCAAACATTTGGTTAAA TGTTTTTCTATT-------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------CTGATGTC CCT >Homo_sapiens TTT-CCATAGCTGTTATTCAG-TTGTAAGCATGTTTTACTG--------GGAGAGTAAC-TTT----------------- -------------------------------------------------------------------------------- ---------------------------CAGATGGCAAGTGTT---GA---AACTGTAACA------AACATTAGTTTAAA TATTTTTCTATT-------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------ATGGCATA CCT Horse136_LINE >L1MAB_EC --------------------------------------------------------------------------AACAAA AAAAAAATTTGTAACTATGTGAGGTGATGGATGTGTTAATTAACTTCATTGTGGTAATCATTTCACAATATATACATATA TCAAATCATTATGTTGTACACCTTAAACATAATACAATGTTATATGTCAATTATATCTCAATAAAACTGAAAAAAAAAAA ----------------------------------------------------------------------- >Equus_caballus CTAAATTATTTTG-AATAAATAAGAATCTCATTTC-TCTTTGTCAGGGAA-TT---AAGAAAATAAATATA--------- -----TTATTGTATCTATATGAGAAGGTGGA--TGTTAGCTGAACCTACTGTGATAATCATTTCACAATATAT--GTAAA TCAAACCATCATGTTGTATGCCTTAAAC-TTATACAGTGATGTATGCCAGTTATTTCTCAATAAAACTGG---------- ---AAAAAAAGAAATATA---AAATATGATGCAGTAAGAAATTATGAAGGTATATGAGGTAAGATTTGGAA >Ceratotherium_simum CCAAATTATTTTG-AAGAAATGAAAATCTTATTTC-TCTTTGTCAGGGAA-TT---AAAAAAATAAATATA--------- -----CTATTGTATCTATATGAGAAGATGCA--TGTTAGCTGAACCTATTGTGGTAATCATTTCACAATATAT--GTAAA TCAAACCATCATGCTGCACGCCTTAACC-TTATATAATGATGTATGTCAATTATTTCTCAATAAAACTG----------- ---GAAAG--AAAATATA---AAATATGATGCAGTAAGAAATTATGAAGGTATGCGAGGTAAGATTTGAAA >Myotis_myotis CTAAGTTATTTTT-TAAAAATAAGAATCTAATTTC-TCTTTGTCAGAGAA-TT---GAAAAAA-GAATATA--------- -----TTATTGTATCTATTTGAGAAGGTGGA--TGTTATTTAAAACTATTGTGGCAATCATTTCACAAGATA-------- --------------TGTACCTCTTAAAC-TTATACAGTGATATATGTCAATTACTTCTCAATAAAACTG----------- ---AAAAAGGTAAATACA---AAGCATGATGCAATAA-AAATTATGAAAGTATGTGAGATAATATTTAAAA >Miniopterus_natalensis CTAAGTTATTTTGAAAAAAATAAGAATCTTATTTC-TCTTTGTCAGGGAA-TT---AAAAAGG-AAATATA--------- -----TTATTGTATCTATATGAGATGGTGGA--TGTTAGCTAAACCTATTGTGGTAATCATTTCACAATATAT--GTAAA TCAAACCATCAGGCTGTACACCTTAAAT-TTATACAGTGATATATGTCAATTGCTTCTCAATAAAACTGG---------- ---AAAAAAATAAA-------AAACATGATGCAGTAAAAAATTATGACAATATGTGAGGTAAGATTTGAAA >Canis_familiaris CTAAGTTATTTTG-AAGAAATGAGAATTTTGTTTCTTTTTTGTCAG-GAA-TT--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---AAGAAAAAAAATACA---AAACACAATAGAGCAAAAGCTTATAAAGTTATGTGAGGTTAAATTTAAAA >Felis_catus CTAAGTTATTTTG-AAAAAATGAGAATTTTGTTTC-TCTTTGTCAGGGAA-TT--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---AAAAAAAGAAAGGTA---GATTATGATGCAGCAACAACTTGTAAAGGTATGTGAAGTAAGATTTGAAA >Manis_javanica CTAAGTTATTTTG-AAGAA-TG-GAATCTTGTTTA-TCTTTGTCAGGGAA-TT--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---AAGAAAAGAAATATA---AAACATGAT-TAGTAAAAAATTATGAAGGTATGTGAAGTAAGATTTGAGA >Sus_scrofa CT--GTTATTTTA-AGGAAATGAAAATCTTGTTTC-TCTTTGTCAGGGAATTT--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---AAAAA--AATATATA---ATACATAATGTGGTAAAAAACTATGAAGGTCTGTGAGGTAGAACTTGAAA >Tursiops_truncatus CTAAGTTATTTTG-AAGAAATGAGAATCTTGTTTC-TCTTTGTCAGGGAA-TT--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---AAAAAAAGAAATAAA---AAGCATAATGTAGTAAATAATTATGAAGATATGAGAGGTAAAATTTGAAA >Condylura_cristata CTCCGTTGTTTTG-AAGAAATGAGAATCTTACTTC-TCT----CAGGGAA-TT--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---AAA-CAATAAATATA---AAACATGACTCAGCAAAAAATCGTGCCGCTAAGCACGGTAAGATTTGAAA >Solenodon_paradoxus CCAAGTTATTTTG-AATAAATTAAAATCTTGTTCT-TTTTTGTCAGGGAA-TT--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---AAAATAAGAAATATA---AAACATGGTTTAGCAAAAAATTATGAAGGCATGTGCAGTAACATTTGAAA >Homo_sapiens CTAAGTTATTTTG-AAGAAATGAGAATCTTGTTTC-TCTTTATCAGAGAATTT--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---AAAAGGAGAGATATA---AAACACGATGCAGTCAAAAATTGTGAAAGCATATGAGGTAAAATTTGAAA Horse142_LINE >L1MAB_EC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------TTTTTTTTTTTCA------ -GTTTTATTGAGATATAATTGACATATAACATTGTATTATGTT-----------TAAGGTGTACAAC-----ATAATGAT TTGATA-TATGTAT---ATATT-----------------------GTGAAATGATTACCACAATGAAGTTAATTAACACA TCCATCACCTCACAT--------AGTTACAA-ATTTTTTTTTTGTTTKTGTGATGAGAACTTTTAAGATCTACTCTCTTA GCAACTTTCAAA-------------------------------------------------------------------- ----- >Canis_familiaris CAAGAATTTACAGATATTATGCAAATA---TCTCCTGCTC-TGTTGTTTATC---TTTTATTA-TTCTTTTT---CATTT ATTTTTATTTTTTGAAGATTTTATTTGAGAGAGAGAGAGGCAGAGAGCATGAGTGAGGAGAAGAGGGAGAAGCAGGCTCC CTGCAGAGTAGGGAGCCCAATGAGGGGCTTGATCCCACCCTAGATCATGAACTGAGCTGAAGGGAGACACCCAACACACT GAGCCACCCAGGCGCCCCTTATTCTTTTTTTTAAATTCAAAACTGAACTAGCAGAATTATATGTTGTATATATA------ ----TTATTAAGATATAATTGACATA-AATATTGAGTTA-----------------AAATGTGCCAC-----CTAATGCT TCAATA-TTTGTAT---ATGTT-----------------------GTGAAATGATCACCACAATAAGTCTAGTTA--ACC TCCATCATCATCC----------AGTTACAA-TATTTTTTTCT-----TGTGATGAGAA-TTTCAGGATCTACTTT-TTA G--------------TCTTA----TTTTTTT---GGTACTGTTTTACTAACAAAA-TTTCACCTCATTTAAAGACACCAA CTAAT >Felis_catus CAAGAATTTAAAAATATTATGTAAATA---TCTCCTGATC-TATTATGTATC---ATTTATTATTCCTTTTT-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------AAATACAAAATTGAGCTAGCTGAGTTATATGTTACATATA-------- ----TTATTGAGATATAATTGACATATAACATTG--TTA--------------------------------------GTT TCAATA-TTTGTAA---ATGTG---------------------------------------------------------- -------------------------------------TTTCC------TGGGATGAGAACTTTCAGGATCTACTTT---- G--------------TCTTATTGTTTTCTTT---GGTGCCTTTTTCCTACCAAAA-TTTCACTGCTTTTAAATACACCAA CTCTT >Manis_javanica CAAGATGGTACAAATATTATGCAATT-TTATCTTTTACTC-TATTATTTATC---TTTTATCA----TTTTT-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------ATGCAGAATTGAAGAAGC-TAATCATATGTTTTATATATA------ -TATTTATTGAAATATAGTTTGCATA-AACATTATATTATTTT-------------GGGTGTATAAC-----ATAATGAT TCAATA-TTTGTAG---GTATT-----------------------GTGGGATCATCACCGCAATATGTTTAGTTA--ATA TCCATCATCATGCATAGTTACATAATTACAATTGCTTTTTTCT-----TGTGATGAGAACTTTTAACATCTACTGTCTCA G--------------TC--------CTTTCT---GGTACTGTTGTCCTACCGAAA-TTTCACTTCTTGTAAAGACAC--- CTAAT >Sus_scrofa CAAGATGGTGCAGATATTATGCAAATATTATCTCCTACTCTTAACATTTATC---TTTTATTA--TTTTTCT-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------ACAGAATTGAAGTAGCTGGATTATA---TATGTATATA------ --TTTTACTGAGATATAGTTTATATATAATATTTTATTA-GTT-----------TCAGATGTATGAC--------ATGAT TTGATATTTTGCAC---ATATT-----------------------GTGAAATGATCACCACAATAAGTCTAGTTA--ACA TCCATTACTCTACAT--------AGTTACAA-TTTTTTTCCCT-----TGTGATGAGAACTTTTATAATCTAGTTTCTCA G--------------TTCTGTCATTCTTTTT---GGTGTTGCTGT-CTACCAAAA-TTTTGCTGCTTTTGAAGACACTTA AAGAT >Bos_taurus CAAGATGGTACAAATATTATGCAAATATTATCTCCTACTC------TTTATT---TTTTATCA-TTTTCCCC-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------ACAGAATT-AAGTAGCCAAATCACATGTTATATGTATGTA---- -TTTTTATTGGGATGTACTTTACATGTAATACTGTGTTATATTATACTGTATTCTCAGGAGTATAAC-------ATTGAT TCAATA-TTTGTATTGAATATTTGGGAAAATTTGTATTGATCATGGGAAAATGATCATTACAATAAATCTAATTA--ACA TCCATCACCACA-AT--------AATTATAA-TTTTTTCTT-------TGTGATGAGAACTTTCAAGATCTAGTCTCTCA G--------------TTCTGTCATTCTTTTA---GG---------CCTATCAAAA-TTTCACTGCTTTTAAAGATACCTA ATAGT >Equus_caballus CAACAAGGGGCAAATATTATGCAAATATTCTCTCCCACTC-TATAGTTTATC---TTTTATCA-TTCTTTTT-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------ATAAACAGAATTGAAGCAGCTGAATCATAAGTTTTATATACATATGTA TTTTTTATAGAGATACAGTGTTCATATAACATCACATTA-GTT-----------TCAGGTATACAAC-----ATAGTGAT TCTGTA-TTTGTAT---ATATT-----------------------GTGAAACGATCACCACAATAAATCTAGCTA--ACA TCCATCACCGTACGT--------AGTTACCA-TTTTTTTTCT------TTTGATGAGAACTTTTAAGATCTACTCTCTTA G--------------TCCTATCTTTCCTTTT---GGTGCTATTCTCCTAGCAAAA-TTTCGCTGCTTTTAAAGACACTTA ATAAT >Tapirus_indicus CAAGATGGTGCAAATATTATGCAAATATTATCTCCCACTC-TATTGTTTATC---TTTTATCA-TTTTTTGT-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------ATAGAATTGAAGTAGCTGAATCATAAGTTTTATATACATATATA -TTTTTATAGAGATATAATTTACATATAACATCATATTA-GTT-----------TCAGGTGTACAACTAGGTTTAGTAAT TCCATA-TTTGTAT---ATATT-----------------------GTGAAACGATCACCACAATAAATCTAGTTA--ACA TCCATCACCATACAT--------AGTTACAT-TTTTTTTTCT------TCTGATGGGAACTTTTAAGACCTACTCTCTTA A--------------TCCTATCTTTCTTTTG---GGTGCTATTATCCTAGCAAAA-TTTCACTGCTTTTAAAGATACTTA ATAAT >Myotis_myotis CAAGTTGGTGAAAATATTAGGCAAATA---TCTCCCCCTC-TATTGTTTCTC---TTTAATCC-TTCTTTTT-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------GGTGCTGTTGTCTTACCAAA--TCCCACTGCTTTTAAAGACATTCC ATAAT >Rousettus_aegyptiacus CAAGATGATGCAGATATTATGCAAGTATTTTCTCCCACTC-TATTGTTTGTC---TTTTAT---TATTTTTT-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------GGTGCCATCATCCTACCAAAA-TTTCACTGGTTTTAAAGACATTTA ATAAT >Condylura_cristata CCAGATAGTATAAATAATATACAGATGCAATTCCTTACTT-TACTGTTTATC---AATTATCA-CTCTTTTT-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------GGTGCTGT---CCTGCCAAAC-TTTCACTA-TTTTAAAGAAATTTA ATAAT >Erinaceus_europaeus CCA-----------GATAATGCAAATATTATCTCCCACTC-TGTTGCTTATG---CTTTATCAGTTTTTTTT-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------GGTGTTGCTTTCCTAACAAAA-ATTCACTT------GAGACTTTTA ATAAT >Homo_sapiens CAAAATGGTACAACTATTATGCAAATATTATCATCCCCTC-TGTTATTTGCC---TTTTATCA-TTCTTTTT-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------GGTGCTATTGTCCTACCAAAATGTTCTTAC-TTTTAAAGACATTTG ATAAT Horse144_LINE >L1MAB_EC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -TTTTTTTTTTTCAGTTTTATTGAGATATAATTGACATATAACATTGTATTATGTTTAAGGTGTACAACATAATGATTTG ATATATGTATATATTGTGAAATGATTACCACAATGAAGTTAATTAACACATCCAT------------------------- ---------------------------------------------------------------- >Canis_familiaris GTTATACACCATGTCTTGTTTCTTGAATCC-TTCTCCAATTT-TTACTGTATTT-AAGAA-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------AC---TACATATTAT-TTTAT-- ------------AATTTTAATTGAGGTATAATTGACATA-----------TTAGTTTCAGGTGTACAACATAATGATTCA ATATCTGT----GGTACGAAATGATCAC------AAGTCCAGTTCACA-----------------TTTTTT---TTAATG GATAAAAACATGGCATACCTGTACTTTCCTATT--TCCTCCCT-TCAGCCCCCATTA---CTCC >Felis_catus GCTACACATCAACTTTTGTTTCTTGACTCC-TTCCCCAATTT-TTACTCTATTT-AAGAA-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------AT---GACA-----T-GTGAT-- ------TTTATTATTTTTAATTGAGGTATAATTGACATATAATATA----TTGGTTTCAGGTGTAAAACATA----TTCG ATATTTGTACATAGTACAAAATGATCACAACAATA---CTAGTGACCA----------------TTTCCTT---TCATTG CATAAAAACACAGCCTGTCTTTACTTTCCTATT--TCCTCCCT-TCAGTCCCCTTTC---CTGC >Manis_pentadactyla GTTACCCACTGACTTCAGTTTCTTGAAATTCTTTCCCAATTT-TAACTGTATTT-AAGAA-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------AC---TACA-----C-ATTTT-- -------------TTTAAAATTGAGATATAAT-------------------TAGTTTCAGATGTACAACATAATGGTTCG ATATATGTTCATACTGCTAA-TCATCCCCACAATAAATCTAGTTAACA----------TACATTGTGTTTT---TCATGG CATAAAAATGTGGCATATTTTTACTTTCCTACC--TCCTCCCTATCAACCCCCTTTC---CTCC >Equus_caballus GTTACACACTAACTTTTGTTTCTTGAATCC-TTCCCCAATTT-TCACCTTATTT-AAGAA-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------GC---TACATATTTT-ATTTT-- --------ATTATTTTTTAATTGAGATATAATTGAAATATAACATTATA-TTAGTCTCAGGTATACAACATAATGATTCC ATATATGTACAAATTGAAAAGTGACCACCACAATAAGTCTAGCTAACA----------TTCGTTTTACTTT---CCGTTA CATAAAACCATGGCATATTTTCGCTTTCCTAGCTTTCCTACC------TCCTCCTCC---CTTC >Ceratotherium_simum GTTACACAT---CTTTTGTTTCCTAAAGCC-TTCCCCAATTT-TCACTCTATTT-AAGAA-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------AC---TACA-----T-ATTTT-- ----ATTTATGATTTTTTAATTGAGAGATAATTGACATATAACATTATA-TTAGTTTCAGGTGTACAATATAATGATTCA ATATACATACATATTGAAAAATGATCACCACAATGAGTCTAGTTAACA----------TTCACTGTATTTT---TCATTT CCTAAAAACATGGCATATTTTTGCTTTCCTACC--TCCT---------CCTCCCTTC---CTCC >Sus_scrofa GTTACACTTCAACTCTCGTTTCTTGAATTC-TCTCCCAACG--ACACACTGTTTTCCACATTTTGGTTTTTTTTTCTTTT AGAGATATAATTGTTATAAAATTCACCCATTTAAAACAAACAATTTTCTGTAAACTAGAGTTGTGCAACCATCACCACAG TCTAATTTTAGAACATCTTCATCAGCCCAGAAAGAGGCCCTTTCTTTCTATGTGTGTCCGTTTGTAGTCACTTCCCACTT CCACCGACCAGGCTTAGGCAACCGTTAATCTACTCTCGGTCTCCATGGATTTGCTTTTTCTGGACAATTCATACAAATGG AATCACACAACATGTGGGCTCCGGGGTTTGGCTTCTTACAGTTAAGATAATGTTTTGAGGTTCATCTATATCGTTAAGTT ACATCAACACTACATCGTTTTTATCGCTGAATAGTAAGTAGTTCATTGACCGGATAGAA---CACAAATTTT-GGTTT-- -------------------------------------------------------------------------------- --------------------------------------------------------------------------TTATTG CATAACAACATGGCATACTCTTGCTTTCCTACC--TCCTTTTTAT---GCCCCCTTT---CTTC >Bos_taurus GTTACACATCAACTTTTGTTTCTTGGCTCC-TTCTCCAACTT-TTACTCTTTTT-AAGAA-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------AC---GACACATTTT-ACTTT-- -------------------------------------------------------------------------------- --------------------------------------------------------------------------CAATTA CATAAAAAAATGGCATATTCCTGCTTTCTTACC--TTCTTTATAT---ACTCCTTTC---CTTC >Myotis_myotis GTT-CACATAAACTTTTGTTTCTTAAATCC-TTGTCCAATGT-TCACTCTATTTGAAAAA-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------AC---TACACCTTTT-ATTTT-- -------------------------------------------------------------------------------- --------------------------------------------------------------------------TCATGG CA-GAAAACTTGGCACATTTTTGCTTTCCAACC--TCCTTCT------TCTCCCTTC---CTTC >Miniopterus_natalensis GTTA-------------GTTTCTTGAATCCCTTTTTCAACTT-TGTCTCTCTTT-AGAAA-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------CC----ACACATTTT-ATTTC-- -------------------------------------------------------------------------------- --------------------------------------------------------------------------TCATTG CTTAATAACCTGGCATAGTTTTGCTTTCCTACC--TCTTTCC------TCTCCTTTC---CCCC >Condylura_cristata GTTACATACTG-CTTTTGTTTCTTAAATCC-TATCATAAGAT-TCACTCTACTG-AAGAA-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------AC---TCCACC-----TTTTT-- -------------------------------------------------------------------------------- --------------------------------------------------------------------------GCATTG CATAAA-----GGCATGGTTTTGCTTTCCTACC--TCT----------CCCTCATCC---CTCC >Erinaceus_europaeus ATTACATATCA-CTTTCAATTCTGGAAACT-TTTCCTCAACTCTCACTTTACTG-AATAA-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------AT---TATGCATCATCTCTTT-- -------------------------------------------------------------------------------- --------------------------------------------------------------------------TC--TG CATACCTACGTGCCACA-TTTTGCT------CC--CCCC---------CCCACATTC---CTCA >Homo_sapiens GTTACACATCAACTGATGTTTCTCGAATCC-TTCCCCAAATT-TCCCTCTATTT-GGGAA-------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------AC---TATACA--TT-ATGTT-- -------------------------------------------------------------------------------- --------------------------------------------------------------------------TCATTG CCTAGAAACATGACATAGTCTTGCTTTCCAACC--TCCTT--------TCCCCTTCCACTTTCC Horse145_LINE >L1MAB_EC -------------------------------------------------------------------------------- ---------------------TTTTTTTTTTTCAG-------TTTTATTGAGATATAATTGACATATAACATTGTATTAT GTTTA--------------------------------------------------------------------------- ------------------- >Canis_familiaris GCCCGTAAG-------AAACCCCCAG---GAATTTGAACAGAGAGAATTTAATT---CTTAACATTTAAGAATGTTT--- -TG-TGATTTAATGGAAATCTTTATTTTCTCCCAATAATAACTTTTATTGAGTCATAATTGACATACAACACTGTAT--- --------T---GAAGTGTT---CGCT--GAAGTTGAG----AAGGT---AAAGAGGACTCTAAGGTACCA--------- -----------CAGCAGCC >Felis_catus CCCAGTCAGGAGACATAAAGCCCCAG---GTATTTGAACAGAGAGAATTGAAGA---GG--------AAGAATTTTT--- -TA-TGATTTGATAGAAACCTTTATTTTTTCCCAATAATAATTTTTATCGGGCTGCAATTGGCACATGACCTTGTAT--- --------TCAAGAAGTGTT---AACT--GAAATTGAG----AAAGT---GAGGGCTACTCTAAGTTATCA---CAGGTG GCAGCTACAGAAAGCAGCC >Manis_pentadactyla TCCCATGAGGAGACAGAAACCACCAG---GTATTTGAACTGAGAAAATTTAATA---TG--------AAGATTGTTT--- TTAATGGTTTAATGAGAATCTTCATTTCCCTCCAG-------TTTTATTGATATATGATGCACATATAACACTAT----- --------TGAAGAATTGTT---AACT--GGAATTGAG----AAGGT---AAAGAGAACTTTAAGTTCTCACCAAAGATA GCAACTGCAGGAAGCAGCC >Sus_scrofa TTCTGTGAGGAGGCAGAAACCACCCA---GTATTTGAAC--AGAGAATTTAATA---TG--------AAGGATATTT--- -TAATGATTTCATGGGAATCTTTATTTTTCTC-AG-------TTTTATTGAGATATAATTGACATATAATGTTACAG--- --------TGAA-AATTGTA---AACTGTGACATTAAG----AAGGC---AACGAGANNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNN >Bos_taurus TCCTGTGAGGAGTCAGGAAGCACCAG---GTATTTGAACAGAGAGAATTTACTA---TG--------AAGAAAATTT--- TTAATGACTTAATGGGAATCTTCATTTTCCTCCAG-------TTTTACTGAGCTGTAACTTACATATAACATTGTAT--- --------GGAAGAATTGTT---CACCATAACATTAAG----AAGGT---AGTGAGG-------------------GGTA GCAAGCGCAAGAAGCAGCT >Equus_caballus TCCCATGAGGAGACAGAAACCACCAG---GTATTTGAACAGAGAGAATTTAATA---TG--------AAGAACTTTT--- TTAATGATTTAATGGAAATCACTATTTTCC-CCAG-------TTTTATTGAGATGTAGTTCACATATAACGTTGTAT--- --------TAAAGAATTGTT---AACA--GAAATTGAG----AAGGT---AAAGAGAATTCTAAGATATCA-CAGAGGTA GCAAGTGCAGGAAG-AGCC >Ceratotherium_simum TCCCGTGAGGAGACAGAAACCACCAG---GTCTTCAAATAGAGAGAATTTAATA---CG--------AAGAATTTTT--- TTAATGATTTAATGGTAATCACTCTTTTTTCCTAG-------TTTTATTGAGGTATAATTGACATATAGCATTGTAT--- --------TGAAGAATTGTT---AACT--GAAACTGAG----AAGGT---AAAGAGAACTGTAAGGTATCA-CAGA---- ------GCAGGAAGCAGCC >Myotis_myotis TTCTCTGAAGAGACGGAAACCA-------GCGTTTAAACGGAGAGAATTTGATA---TG--------AAGAATTGTT--- -------------------------------------------------------------------------------- -----------------------AACTGTGAAACTGAG----ACGGT---AAAGAGAACTCTAAGGTATCA-CAGAGGTA GCGACTGCAGGTAGCAACC >Rousettus_aegyptiacus TCTCACGAGGAGACAGAAAGCACCCG---GTGCTTGAACAGAAAGAATTTAAGA---TG--------AAGAATTGTT--- -------------------------------------------------------------------------------- -----------------------AACTGTGAAATTGAG----ACGGT---AAAGAGAACTCTAAGGTATCA-CAGAGGTA CCAGCTGCCGGTAGCAGCC >Condylura_cristata TCCTGTGAGGCGACAGAAACCACC-------------------AGAATTTAAG----TG--------AAGAATTATT--- -------------------------------------------------------------------------------- -----------------------AGCCATCAATGTGAG-------GTTT-ATAGAAAACACTAAGTT-TCA-CAGAAGTA GCAGCTGCAGGAAGCGATT >Sorex_araneus TCTCCTGAGGAGGCAGAAGCCACCAGGCAGCATCTGAGCCCAGAGAACTTAAGG---GG----------GCA--GTT--- -------------------------------------------------------------------------------- -----------------------AACTGTGGAACTGAGACACAAAGACACAAAGAAAACTCTCAG--------------- ---GGTGTAGAAAGCTGCT >Homo_sapiens ACCTGGCAGGAGTCAGAAACTTCTAG---TTATTTGAGGAGAGACAATTTAATG---CA--------AAGAATTGTT--- -------------------------------------------------------------------------------- -----------------------AGCTGTGGAATTGAA----AAGATTTAAAAGAGTACTTGAAGTTAGAA-CAAAGGCA GCAGCTGTAGGCAGCAGCC Horse148_LINE >L1MAB_EC -------------------------------------------------------------------------------- -TTTTTTTTTTTCAGTTTTATTGAGATATAATTGACATATAACATTGTAT------------------------------ ------TATGTTTAAGGTGTACAACATAATGATTTGATATATGTATA-------TATTGTGAAATGATTACCAC----AA TGAAGTTAATTAACACATCCATCACCTCACATAGTTACAAATTTTTTTTTTGTTTKTGTGAT-GAGAACTTTTAAGATCT ACTCTCTTAGCAACTTTCAAATATACAATACAGTATTATTAACTATAGTCACCATGCTGTACATTACA-TCCCCAGAACT TAT-TCATCTTATAACTGAAAGTTTGTACCCTTTGACCAACCTCTCCCTATTTCCCCCACC---------------CCCC AGCCTCTGGCAACCACCAATCTATTCTCTGTTTCTATGAGTTTGG----TTTTTTTTTTTTAGATTCC------------ ------------------------------------------------------------------- >Canis_familiaris AGTTTTATTGGAGAAAATGCCATACCACTGAAGAAAATTCCCTAATAGCT---AGAACGAGAAAAGA------AATTA-- ----TTTCCCCTCAG----ACTGAGAT--CATTGACACATAACACTGTA------------------------------- ------------TAAGGTGTACAACATAATGATTTGATCTAAGTATA-------TATTGTGAAATGATCACCAC----AG -TAAGTTA------GCATCCTTCACCTAACTGAAT------------TTTTTCCCTTGTGAC-GAGAACTTTTAAGATCT ACTCTCTCAGC----TTTAAATATATATCACGTTATTATCACCTACAGCCACCACGTTGTACATTACA-TTCACAGAACT TTT-TCATCT-GTAACTGGAAATCTGTACTTTTGGATCCCTTTCACCAGAACCCCCCTACTCACTTCCATCCTAGACTCC CACTTCTGGCAAACACACATCAGATCTCTCTTTCTACAAGTCTGGTAAATTTTTTTT--------------TATGAGAAG AAAAA--CTA---TC-CAGAGGTAC-TATTAAGT---------------CAAAG-AAAATAGTTACA >Felis_catus AGTTTTATTCGAGAAAATGCCGTACCACTGAAGAAAATTCCCTAATAGCT---AGAAAGAGAGAAAAAAAA--AATTA-- ----TTTTCCTCCAG----ATCGAAATATAACTGACACGTAACATTGCA------------------------------- ------------TAAGGTGTACAACATAATGATTTCACAGAAGTATACATACCGTATTGTAAAATGATTACCAC----AG ------TA------GTATCTTTCACCT-----AATTGTAA-----ATTTTTTCCCATGTGANNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----------------NNNNNNNNN NNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Manis_javanica AGTTTTATTCGAGAAAATGCCATACCACTGAAGAAAATTCCCTAATAGCT---AGAAAGAGAAAAA-------AATT--- -----TTTTTCCCAGTTTTATT--TATATAATTGACATATAACATTGTA------------------------------- ------TAAATTTAAGATACATGATATAATGATTTGATATAGGTATA-------TATTGTGAAATGATTGTCAC----AG -TAAGTTA------ACATCGCTCACCTCACACAGTTACAA---TATTTTTTGCCCTTGTCAT-GAGAA------------ -----CTTATCAACTTTTAAATATACAATACAGTACTGTTAACTAGGGTCATCATGCTATACATGATA-TCCTCAGAACT TATTTTATCTAACAACTGGAAGTTTGTAACTTTTGACTCCCTACACCTAATCCCTAATGCT------------------C CACCTCTGACAACCACTAATCTGATC----TTTCTATACATTTTG---TTTTTTT----------------AGAAGGAAA AAATA--TTA---CT-GAGAAGCAA--TTTAAGCACTTAAAT------ACCAGGTAAATTAGTTTCA >Sus_scrofa AGTTTTGTTTGAGAAAATGCCGTACCATTGAAGAAAATTCCCTAAGAGCT---AGAAAGAAGAAAAAG-----AATTA-- ----GGTT-TCCCAGTTTTACTGAGATACAATTGACATTGAACATTGCATAAGTTTACGGTAGGACTTCCCTTGTGGCTC AAAGTCTAAGTCTCAGGTGTACAACACAATGATTTAA-----GTAA--------CATTGTGAGATATCCCCATA----AG ATGAGTTC------ACATCCCTCGCCT--CACAGTTACAGCTCTTCATTTC----------------------------- -----CTTAGCAATTTTCAAACAGACAAGACACTACAGTTAATTATACTCACCATGTTGGGCATTACATTCCCCAGAAC- ----TCATTTTATAACTGGAAACTGGTGCCTTTCGCTCCCCTTGACCCAATCCCCCCACCTGACCCCCTCCCCAAACTCC CATCTGTGGCAACCGCATATCTGACCTTTGTTACTAAAGGTG-------TTTTTT----------------GAAAAGAAA AAAAA--------TT-GAGACATAA-TGTTAAGCAATTAAATTATGT-CTAAAGTAAATTAGTAACA >Tursiops_truncatus AGTTTTGTTTGAGAAAATGCCATACCATTGAAGAAAATTCCCTAAGAGCT---AGAAAGAAGAAGA--A----AATTA-- ----TTTTCCCCCAGTTTTATTGAGATATAATTGACATGTAACATTGTG------------------------------- ------TAAGTTTAAGGCATACAACAAAATGATTTAA-----ATATA-------TATTGTGAAATAATCACCA------- -GAAGTTA------ACATCCTTCCCCTCACGCAGTTACAAATCTTTTTT-----------------------------CT ATTCTCTTAGCAACTTTCAAATATACAATACACTATTGTTAATTACAGTCACCATGTTGTACATTACA-TCCCCAGAACT TATCTTATCTTACAACTGGAAGTCTGTACCTTCTGATCCCCCTTTATCCAATCTCCCCACAAC-------------TCCC CACCTGTGGCAACCACAAATCTGATTTCTATTACTAAAAGTTTGG----TTTTTT----------------GAGAAGAAA AAAAA----A---TT-GAGAGGCAA-TGTAAAGCAGTTAAGT------ACAAAGTAAATTACTTACA >Equus_caballus AGTTTTATTTGAGAAAATGCCATACCACTGAAGAAAATTCCCTAATAGCT---AGAAAGAAGAAAAAAC----AATTA-- ----TTTT-TCTCAGTTTTATT--GATATAATTGACATATAACACTGTATAAGTTTA-------ATTATAACACTATACA TATATATAACTTTAAAGTCTACAACATAATGATTTGATATAAGTATA-------TATTGTGAAATGGTTACCAA----AG -TTAGTTA------ACATCCCTCACCT--TATAGTTACAA---TTTTTTTTCCACTTGTGAT-GAGAAATTGTAAGATC- -------TAGCAACTTTTCAATATATAATACAGTACTGTTAACTCTAGTCACCATGCTGTACATTACA-ACCCCAGGACT TAT-TTATCTTCTAACTGGAAGTTTGTATCTTTTGACCCCTCTCACTCAACCCCTCCACCCCCTAC----------TCCC TGCTTGTGGCGACCATAAATCTGATCTCTGTTTCTGTAAGTTTAG----TTTTAT----------------AGAAGGAAA AAAAAAATTA---TT-GAGAGGCAA-TGTTAAGCAATTAAATTAAGT-ACAAAGTGAATTAA--ACA >Ceratotherium_simum AGTTTTATTTGAGAAAATGCCATACCACTGAAGAAAATTCCCTAATAGCT---AGAAAGAAGAAAAAAA----AATTA-- ----TTTT-TCCCAGTTTTATCGAGATATAATTTACAAATAACATTGTATAAGTTTA---------------ATTATAAC ATTGTATAAGTTTAAAGTATACAACATAATGATTTGATATAAGTATA-------TATTGTGAAATGACTACCACAATAAG TTTAGTTA------ACATCCCTCACACCTCATAGTTATAA----TTTTTTCCCCCTTATGATAAAGAAGTTTTAAGATCT ATTCTCTTAGCAACTTTCAAATATACACTCCAGTATTGTTAACTGTAGTCACCGTACTGTACATTACA-TCCCCAGGACT TAT-TTATCTTAGAACTGGAAGTTTGTACCTTTTGACCCCCCTCACCCAATCCCCCCAGCCCCTA-----------CTCC CCACTCTGGCAACCATAAATCTGATCTCTGTTTCTATAAGTTTGG----TTTTTT----------------AGAAGGAAA AAAAAA-TTA---TT-GACAGGCAA-TGTTAAGCAATTAAATTAAGT-ACAAAGTAAACTAGTTACA >Myotis_myotis AGTTTTATTGGAGAAAATGCCATACCATTGAAGAAAATTCCCTAAGAGCT---ATAGAGAGAGAGAGAAAAAAAAATA-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------GT-GAG-GGCAA-TGTCAAGCAATTAAATTAGGT-ACAAAATACATTAATTACT >Rousettus_aegyptiacus CGTTTTATTTGAGAAAATGCCGTACCATTGAAGAAAATTCCCTAATAGCT---AAAAAGGAGAAAAAGA----AATTA-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------CT-AAGAGGCAA-TGTTACACAA-TAAATTAGGT-ACAAAGTAAGTTAGTTACA >Scalopus_aquaticus AGTTTTATTGGAGAAAATGCCATACCATTGAAGAAAATTCCCTAGTAGCT---GGGGAAAAAAA---------AATTA-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------GT-GAGAAGAAA-TGTGAAACAATTAAATCAGGT-ACAAAATA----CATGACA >Erinaceus_europaeus AGTTTTATTTGAGAAAATGCCATACCACTGGAGAAAGTTCCCTAACAGCT---ACAAAGAAGCAA--------AATGA-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TTAGGAAGGCAA-CATTAAACAACCAAATTAGGT-TCAAAATANNNNNNNNNNN >Tupaia_chinensis AGTTTTATTTGAGAAAATGCCATACCACTGTAGAAAATTCCCTAATAGCT---AGAAAGAGGAAAAGAAA----ATTA-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------TT-GAGAGGCGACTGTTAAGCAATTAAATTATGT-AGAAAGAAAAACAGTTACA Horse149_LINE >L1MAB_EC -------------------------------------------------------------------------------- -----GGGATGTAATGTACAGCATGGTGACTATAGTTAATAATACTGTAT----TGTATATTTGAAAGTTGCTAAGAGAG TAGATCTTAAAAGTTCTCATCACAMAAACAAAAAAAAAATTT--GTAACTATGTGAGGTGATGGATGTGTTAATTAACTT CATTGTGGTAATCATTTCACAA---TATATACATATATCAAATCATTATGT---TGTACAC-----CTTAAACATAATAC AATGTTATATGTCAATTATATCTCAATAAAACTGAAAAAAAAAAA----------------------------------- --------------------------------------- >Canis_familiaris TATGGTGACTGCATGGACTACAGGTAACCAAAATGCACTTGGTGAAGTTTAAA-------TC---AAAA---TACAAAAG CA----------------TACTGTATTGACTGTAGTTAACAATACCATAT----TGCATATTTGAAAGTTGCCAGGAGGG TAGATCTTAAAAGTTCTCATCACAAGAAAAAAAAACTTTTTTTGGTGGCTATATATGGTGATACA--TGTTAACTAGATT AATTGTGCTGATTATTTTGCAAAACTCCATGTAAATATTAAGT-----------TGTACGC-----TGGAAAT-TAATGT GATATTATAGGTCACTTGTACCTCAATTTAAAAC--------------AAAAGTGTACAGAAGCA---ACTGATCCAAGA ATTTTTTTTATAA-GGTATGATTTTAGCTATTTAGCATT >Felis_catus TCTGGCAGATGCATATCCTTCAGTTAACCAAAATGCACATGGTGAAGTTTAAA-------TC---AAAA---TACAAAAG CA-------TTCTTTATGGACTATATTGACTGTAGCTAACAATGCCATAT----TGCATATTT----------------- --GATCTT----GTTCTCGTCACAAGAAACAAAAAATTTTTT--GTAGCTCTACATGGTGATGGA--TGTTAACTAGATT TATTGTGGTGATCATTTTGCAAAACTACATACAAAGATCTCATCATTATGT---TGAATAC-----CAGAAGC-TAATGT AATA---TAGGTCATCTGTACCTCAATTTAAAAT--------------AAAAGTATACGGAAGCT---AATGATCCAAGA ATATTCTTGATAA-ACTAGGATTTTAGCTATTTAGCATT >Manis_pentadactyla TATG------ATACATACTGTGGTGAACTAAAATGCCTATGGCAAAGCTTATA-------TA---AAAAATATATAGAAG CA-------TTCCTTATTGACTATATTGAGGATAGTTAATAATACTATAT----TGCATATTGGACAGTTGCTAAGAGAG TAGATCTTAAAAGTTCTCATCACAAGAA--AAAAA-TTTTTG--GTAACTATATGTGATGATGGA--TATTAATGGGGCT TATTGTGGTGATCATTTCTCAA---TCTTCACAAATATTGAATCATTATTT---TGTATAC-----CTAAAAC-TAGTGT CATG---TATGCCAATTATATCTCAATTAAAA----------------AAATGTATACAGAAGGA---AATTATCCCAGA GTACTTTCAATAA-AGTATAACTTTAGCTATTTAGCATT >Sus_scrofa TATGGT-GATACATGTAGTGCAGTTAACCAAAATGCATATGTCAAAGTTTAAA-------TC---AAAATTATACAGAAG TG-------TACTTT---GACTATATTGATTATAGTTAATAACACTGT------CACATATTTGAAAGGTGCTAAGAGAG TAGATCTTGTAAGTTCTCATCATAAGAA--AAAAA---TTTT--GTAACTACATTTAGTTATAGA--TGCTTACTAGACT TATTGCAGTGATCATTTTGCAA---TATATACAAATATGGAATGATTATGT---TGTACAC-----CTGAAAC-CAG-AT AATGTTGTAGATCAATTTTACCTCAGTTTCTT----------------AAAAGTATACAGAAGCA---AATGAT-CCAAA ATATTTTTGATAA-AGTTTGATTTCAGCTATTTAGAATT >Bos_taurus TATGGTAGATAC-CATACTGCGATTAACCAAAATGCATAGGGCAAAGTTTAAA-------TA---TGAAATATGCAGATG CA-------TACTTTATTGACTGTACCAACTATAGTTAATAACACTGTGT----TGTGCATTTGGAAGGTTCTAAGAGAG TAGATCTTGTAAGTTCTTATCACAGGAA--AAACA--TTTTT--GTAACTATGTATAGTGACAGA--TGTTAACTAGGCT TCTTGTGGTGATCATTTTGCAG---TATATACAAATATGGAATC---ATGT---TATACAC-----TTGAAAC-CAG-AC AACTT--TATGTCAATTATTTCTCAATTTTAAA---------------AAAAGTATACAGAAGCA---AATGATCCCAGA AGATTTTTGATAA-AGTATGATTTTAACTATGTAGCATG >Equus_caballus TTTGGTAGATACATGTACTGCAGCTAACCAAAAGGCGTACAACAAAGTTTAAA-------TC---AAAAGTATACAGAAG CA-------TACTTTATTGACTATATTGACTAGAGTTCATAAAACTATAT----TGTGTATTTAAAAGTTGCTAAAAGAG TAGATCTTAAAAGTTCTCATCACAAGAA--AAAAAATTTTTT--ACCACTAGGTATGGTGACAAA--TGTTAGCTAGACT TATTGT-GTGATCATTTTGCAG---TATATACAAATATTGAATCATTATGTCAGTATATACAAATATTGAAAC-AAATAT AATGTTATATGTCAATTATACCTCAATTTAAAA---------------AAAAGTATACAGAAGCA---AGTGATCCCAGA ATATTTTTGATAA-AATATGGTTTTAGCTATTTAGCATT >Ceratotherium_simum TATGGTAGATATATGTACTGCAGTTAATCAAAATGTGTATGGCAAAGTTTAAA-------TC---AAAAGCATACAGAAG CA-------TACTTTATTGACTATATTGACTATGGTTAATAAAACTATATTGCATGCATATTTAAAAGTTGCTAAAAGAG TAGATCTTAAAAGCTCTCATCACAAGAA--AGAAAATTTTTT--GCAACTATCTGTGGTGACAAA--CATTAACTAGACA TTTGGTAGTGATCATTTTGCAG---TATATACAAATATCGAATCAGTATGT---TATATAC-----CTGAAAC-AAGTAT AATGTTATATGTCAATTAGACTTCAATTTTTTA---------------AAAAGTATACAGAAGCA---AATGATCCCAGC ATATTTTTGATAA-AATATGATTTTAGCTGTTTAGCATT >Myotis_myotis TATGGTAGACACATGTACTGCAGTTAAGCAAAATGGATATGATAAAGTACAAA-------TC------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------AAAA-TATACAGAAGCA---AATGATCCCAAA ATATTTTTGATAA-AGTATGAT--------TTTAGCATT >Rousettus_aegyptiacus TATAGTAGATACATGTACTGCAGTTAAGCAAAATGCAGGTAGCAAAGTTTAAA-------TC------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------AAAAGTATACACAAGCA---AATGATCCCAAA ATATTTTTGGTAA-ACTATGATCTCAGTTATTTAGCATT >Condylura_cristata TATGATAGATACACACATTGAAGCTAA-CAAAATCTATGTAGCCAAGTATAAACCAAAGTTT------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------AAAAGTTTTCAGAAGCC---AGTTTTCTC--A TTTTTTTTGATAA-AATGTGAT-TCAGCTACTTAGAATT >Erinaceus_europaeus CATAGTAGAAACATGTAC-----------------AATATGACAGCATTTAGA-------TT------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------AATAGTATGCAGAAGAA---AACCCTTCCATA TTATTTTTGATAATCTTATGGATTTAACTATTTAACACT >Cavia_porcellus TATGGTACATAGATGTACTACCACTATCCAAAATACATATGGTGAAATCTAAA-------AC------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------AAAAGTATGCAGACTCA---AATGATTCCAGG ATATTTTTAGTAA-AGTATAATTTTGACTGCTTGGTATC Horse152_LINE >L1MAB_EC ---------------------------------------------------------------------------CAAAT CATTATGTTGTACACCTTAAACATAATACA-ATGTTATATGTCAATTATATCTCAATAAAACTGAAAAAAAAAAA----- ------------------------------------------------------------------------- >Sus_scrofa ATATGAGGGAAGCAGTCCGGC----TGGCAGTGGATGCCCATGCTGGTCACACA---AAACTGGTAGAATCT-------- TTTCATGCTGCACCCCTGAAAC---TTACGTATGTTATACGTGAATTTTACCTCAACCGAGCTGGAAAAAAATAAAACCC ----AAACCGGTGCAATGC---CTGTATGCCTTCACTATGAACCCTATCCACA-GACCAGAGACACGGGGTGG >Tursiops_truncatus ACACGAGGGAAGCAGTCTGGC----CGGTGACGGACGCCCATGCTGGTCACGTA---AAACCGGTGCGATGT-------- TTTCATGCTGCACACCTGAAAC---TTACATGTGTTACCTGTCAGTTATACCTCAATAGAGCTGGAAAAAAA-AAACCCC ----AAACTGGTGCCAGGT---CAACTTGCTCTTACCGTGAACCCCATCCACA-GGACAGGGACACTGGCTAC >Equus_caballus CCACAAAGGAATCAGTCTGGC----CAGTGGTGGACGCCCACTCAAGTCAGACG---AAACTGGTGCAACGT-------- AACCACGTTGTACACCTTAAAC---TTACATATGTTCTATGTCAATTCTATCTTAATAAAACTAGGGACA---------- ----AAACC----CAATGC---CAACCTGCCCTCACGG-GAGCCCCACCCAAA-GGACGAAGACACAGGATAC >Tapirus_indicus ACACGA-GGAATCTGTCTGGC----CAGTG-TGGACATCCACTCAAGTCAAATA---AAACTGGTGCAATTT-------- TACCACGATGTACACCTTAAAC---TTACATATGTTCTATGTCAATTCTATCTCAATAAAACTTGGAAA----------- ----AAACC----CAGCGT---CAACTTGCCCTCACAGTGAGCCCCACCCAAA-GGATGAAGACATAGGATAT >Condylura_cristata GCACAAAGGAA-CAG-CTGGC----CA-TGGCAGGTGCCCACTCCC-----ATA---AAGCTGGTTCAAT---------- ---CACCCTGGATACCTTAAGC---CTACATATATTAAATATCAATTATATCTCAATAGAGCTGATGGGAAG-AAATCCC ----AAACTGGTGCAACAT---CAACGTGCTGTCACTATGAACTCTGCCCAA--GGACACAGCCACCAGGTAC >Solenodon_paradoxus GCATGAAGGAATCACTCTGGC----CAGTGCTGG------ACTCAATTCAGATA---AA-CTGGTTCAGAGT-------- TATCACACTGCATACCTTTAAC---CTAC--ATACTATTTATCCATTATATCCC---AGAGCTGAA--AAAT--AATCCC A---AAACTGCTGCGACAA---CAGCTGGTCCTTACT-TGAACTCTGTCCAAA-GGAC--AGACACAAGATAT >Canis_familiaris TCATGAAGGAATTGGCCTGGCGAGTTAGTGGTGGACGCCCATTAAAGTCAGATA---AAAGGGGTGTGACGT-------- -------------------------------------------------------------------------------- ----------------------CAACTCATCCTCACTATGAACTCCATCCAAA-GGACAAAGACGTGGAATAA >Felis_catus TCATGAAGGAATCAGTCTGGC----TAGTGGTGGACGCCCACTCAAGTCAGATA---AAACTGGTGCAATGT-------- -------------------------------------------------------------------------------- ----------------------CAACTTGTCCCCACTGTGAACTCCATCCAAA-GGAC--AAACACAGGATTC >Manis_javanica ACATGAAGGGACCGGTCTGGC----CAGTGGTGGACACCCATTCAAGTCAAGTA---AAACTGATGCAATAT-------- -------------------------------------------------------------------------------- ----------------------CAATTTGCCCTCACTGTGAACTGCATCCAAA-GGAC--AGACACAGGATAT >Myotis_myotis GCATGAAGGAATCAGTTTGGC----CAGTGGTGGATGCCCACCCCAGTCAGATC---AAATTGGTGCAATGT-------- -------------------------------------------------------------------------------- ----------------------CAAATTGGCCTTACTGTGAACTCTATTCAAA-AGATAAAGGCACAGGGTAG >Rousettus_aegyptiacus GCATGAAGAAATCATTCTGGC----CAGTGGTGGATGCCTACTCAAGTCAGATA---AAATT-GTGCAATGT-------- -------------------------------------------------------------------------------- ----------------------CACCTTGCCTTCACTGTGAAGTCCATCCAAA-GGACAAAGACTAAGGGTTT >Homo_sapiens GCA---GGGGATCCCTTGGGC----CAGCACTGGGTGCTCATTCGAGTCAAATA---AAACTGATGTAATGT-------- -------------------------------------------------------------------------------- ----------------------CAACGTATCCTCCATGTGAACTCCACCCAAAGGGACGAAGACACAGCACAG Horse153_LINE >L1MAB_EC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------TTTTTTTTTTTCA------------GTTTT ATTGAGATATAATTGACATATAACATTGTATTATGTTTAAGGTGTACAACATAATGATTTG--ATATATGTATATATTGT GAAATGATTACCACAATGAAGTTAATTAACACATCCATCACCTCACATAGTTACAAATTTTTTTTTTGTTTKTGTGATGA GAACTTTTAAGATCTACTCTCTTAGCAACTTTCAAATAT-ACAATACAGTATTATTAACTATAGTCACCATGCTGTACAT TACATCCCCAGAACTTA-TTCATCTTATAACTGAAAGTTTGTACCCTTTGACCAACCTCTCCCTATTTCCCCCA-CCCCC CA-GCCTCTGGCAAC----------------------------------------------------------------- ---------- >Canis_familiaris ATAGAATTTCTAGAAGAAACA-TTAGTTTAAATATTTGTGACCTTAGATT---TGGCATTG-TTTTTTTTTTT---AATT TTCATTCATTTACCCATTCATTCA-------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- TTCATCCATTCATTCGTGGTGTTGTCGTTGGCTTTATCTAGTCTATTTTTTATTTATTTTTTTTCTAGTCTA-TTTTTTA ATTGAGATATAAGCGACTT-----ATCATATTA-GTTTCAGGTGTACAGCGTAATGGTTTGGGATATTTGTATCT-TTGA GAAATAGTCACCA----GAGTCTAGTTA--AAATCCATCACCACACA--GTTACAAAATTTTTTCCCT----TGTGATTA GAACTTCTAAGATCCACTCTCTTAGTAACTTTTAAATGT---------------------------ACAATGTGGTCCAT TACATGCCCTTAGCTTA-TTTATTTTATAATTGGAAATTTGTATCTTTTGACCACCTTCACCC-ACTTCTACAA-CCCTT GACACCTC----------TGGCATTGTTTTGTTT---AGACATGATACCAAAA---------ACC--AGAGAAAACCTAG ACGAATTGGG >Felis_catus ATAAAACTCTTAGAAGAAACA-CTGGTTTGAATATTTGTGACCTTAGATT---TGGCACTGGTTTATTTATTT---AACC CTTTTTAGTTCACTGATTTATTTTGAAAGACAGGGAGAGAGAGTGCGGGTGAGCAGGGGAGGAGCAAAGAGAGAGAGAGG GAGAGAGAGAATCCCAAGCAGGCTCCTTGCTGTCAGTACGAAGCCTGACGCAGGCTCAATCCCACACACTGAAATCATGA CCTGAGCTGAAATCAAGAGTCAGATGCTTAACCAACTGAGCCACCCAGGAGCCCCTGTTTCTTTCCTTCTTTATTTACAT TTACTCATTCATTCAGTCATGCTGTTGTTTGGGTTT--------------------------ATCTAGTTTATTTTCTTA ATTGAGATATAACTGACTT--------ATATTA-GTTTCAGGTGCACAGCATAATGGTTTGGCATATTTGTATTTATTGA GAAATGATCACC---AGGAGTCTAGTTA--AAATCTATCATCACACA--GTAACAAATTCTCTTCCT-----TGTAATGA GAACTTTTAAGATCTACTCTCTTAGCAACTTTTAAATGTAACACTGCAGTACTATTAACTAGAGTCATAATGCTGTACAT TGCATGCCCATGACTTA-TTTATTTTGTAATTGGAAATTTGTATCTTTTGACCACCTTCACCC-ATTTCTCCAA-CC--- -------C----------TGGCATTGTTTTCTTT---AGATATGATACCAAAACTACAAGTAACC--AAAGAAAAACTAG ACAAGTTAGA >Sus_scrofa ACAAAACTCTTAGAAGAAACA-C--GTTTAAATATTTGTCACCTGGGATT---TGCCATTGGCT-ATTTATTT---A--- --------TTTGTTTACTTGTTCT-------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------TATTGCTGGCTTTA--------------------------ATCTCA-----TTTTTT- -----GATATAATTCATTT-----ATTAAATTA-GTTTCAGGTGTATAATTTAAACATTTG--ATACTTGTATATGTTAA GAAATGATCACCACAATAAGTCTTACTA--ACATCCATCACCACAGATGGATGCAATTTTTGTGTTCT---------TGA GAACTT--AAGATTTACTCTTTCAGCAACTTTCAAATAT------ACCATACAACTGATTACAGTCACCATGCTGTACAT TACATTCCCATGATTTATTTTATTTTACAGGTAGAAGTTTGT---CAAAGACCGTTTTCACCC-ATTTCACTCAGCT--- ------------------------------------------------------CACAAGTAACC--AAAGTAAAAATAG AAAAATTGAA >Tursiops_truncatus GTAAAATTCTTAGAAGAAACA-TAGGTTTAAATATCTGTTACCTTGGATT---TGCCATTGGTT-A--TTTGT------- -----------------TTGTTTT-------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------TGTTGTTGGCTTTA--------------------------ATCTAG-----TTTTTTT AT----ATATAATTGACTT-----AT----TTA-GTTTCATGTGTATAACTTAATCATTTG--ATATTTGTACATGTTGA AAAATGATCACCACGATAAGTCTAGTTA--ACATCCATCACCACGGATGGTTGCAAAT-GTGTGTGTG----TGTGGTGA GAACTTTGAAGATTTACTCTCTTAGAAACTTTCAG------------TACGCAATTAACTATAGTTACTGTGCTGTACAT TACATCCCCATGACTTA-TTTATTTT-TTCCTGGCAGTTTGTACCTTTTGACCACCTTTCCCC-ATTTCACCCAGCCCCC CACACCCC----------TGGCATTGGTTATTTT---AGATATGATACCAAAAACACAAGTAACC--AAAGTAAAACTGG AAAAATTGAA >Equus_caballus GTAAAACTCTTAGAGGAAACA-TATGTTTAAATCTTGGTGATCTTGGATT---TGCCATTTTTT-AA-ATTGT------- -----------------TTATT---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------TGTTGGTTTTA--------------------------ATCTAGT----TTTTTTA ATTGAGATATAATTGGCATA--ACATTATATTA-ATTTCAGGTGTACAACATAATGGTTCA--ATATTTCTATGTACTGA GAAACGGTCAGCATAATAAACCTAGTTA--ACATCTATCATCACACATAATTACAAATTTTTTTCT------TATGATGA GAAGTTTTAAGAT-TACTGTCTTAGCAACTTTCAAATAT-ACAATACAATATTACTAACTCTAGTCACCATGCTGTACAT TACGTCCTTATGACTTA----------TAACTGGAAGTTTGTTCTTTTTGACCACTTTCACCC-ATTTTGTCCA-CCCCC TACATCAC----------TGGCATGGGTTTTTTA---AGATATGATACGAAAAACTCAAGAGACC--AAAGAAAAACTAG ACAAATTGAA >Ceratotherium_simum ATAAAATTCTTAGAAAAAACA-TGGGTTTAAATCTTGGTGAAATTGGATT---TTCCATTTTTT-AAAATTAT------- -----------------TTATT---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------TGTTGTTCGTTTTA--------------------------ATTTGGTTAA-TTTTTTT ATTGAGATATAATTGACTTACGACATTATATTA-GTTTCAGGTGTACAACATAATGGTTCA--ATATTTGTATATAATGA GAAATGATCACCACAATAAGTCTAGTTA--ACATTCATCACCACACATAACTACAAATTTTTTTCT------TGTGATAA GAAATTTTAAGATTTACTCTCCTAGCAACTTTCAAATAT-ACAATACAGTATTATTAACTCTAGTCACCATGCTGTACAT TACATTCTCATGACTTA-TTTATTGTATAACTGGAAGCTTGTTCTTTTTGACCACTTTCACCC-ATTTTGCCCA-CCCCC CACATCCC----------TGGCATTGATTTTTTA---AGATAAGATACCGAAAACTCAAGAAACC---AAGAAAATCTAG ACAAATTAGA >Myotis_myotis ATAAAACTC-TAGAAAAAGCA-TAAGTTTAAATCTTTGTGACTCTGGATT---TGGCATTGG---AA-TTTTT------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------AGCTACGGCACCAAAAACATGAACAACC--AAAGAAAAACTAG ACAAATTGAA >Rousettus_aegyptiacus AAAAAACTCTTGAAAGAAACA-TAAGTTTAAATCTTCGTGACCTTGGATT---TGGCATTG----AA-TATTT------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------TCGTATGACACCAAAAACACAAGTAACC--AAAGAACAACTAC ACAAACTGAA >Condylura_cristata AG-AAAATCCTAGAAAGAATA-TAAGTTTGAATCTTTGGGGCTCTGAATT---TGGCATTTTTT--A-AAAGA------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------TCATATGA----AAAAACTCAAGTACCCATACACAAAATCTAG ACAAACTGGA >Sorex_araneus ATGGGACATTTATTTAAAACAATAGGTTAGTAAT-----GACTTTGTCTC---TGGCATTTAA--TCTAAATA------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------TGATACCA----AAAA-TGCACATAACT--GAAGAAGAGTTAT AT-AATTAAA >Homo_sapiens ATAAAACTCATAGAAGAAACA-TAGATTTAAATCTTTGTGACCTTAAATT---TGGCATTCTT-----TTTTT------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------AGATATGACCCCAAAA-CATAAGTAACC--AAAGAAAAACTAG ACAAATTAGA Horse154_LINE >L1MAB_EC -----------------------------------------------------------------------TTTTTTTTT TTCAGTTTTATTGAGATATAATTGACATATAACATTGTATTATGTTTAAGGTGTACAACATAATGATTTGATATATGTAT ATATTGTGAAATGATTACCACAATGAAGTTAATTAACACATCCATCACCTCACATA------------------------ ----------------------------------------------- >Canis_familiaris AGTGAAAATAACAGAATCTTGGGGGCACTTTTTTAAGAATCTAAGCTATAT---TCTATTAACTGCTT-------ATTCT TACAGATTTCATAAG-TATGAT--ATATATATGACT-TAT-AAGTTTAAGGTGCACAGGATAATTCTTTGGCTCTCAAAT AT--TG-----CAATTATTGCAATAAATTTAATTAGC--ATCCTTC-------------ACTG-TACCCTTCT---GATC CAGCTCCCAGTATGCTTTGTTTTAACCA-AATATACTTCAATCCAGA >Felis_catus AGTGAAAATAAAGGAATCTTGCAGGTACTTTCCTAAGAATTTGACCTGCTT---TCTATTAACCCTTT-----TTTTTTA AATAGTTTTGTTAAA-TGTAATTGACACATATAACC-TAT-AAACTTAAGATGTACAGAATAATGTTTTCACTTTGAAAT AT--TGTGAAATGATTACTGTAATAAAGTTAATTAGC--ATCCATC-------------ACCGCTAAACTCTT---GAAA CAGTTTCCAGGATGCTTTGTTGTAACCAAAATGTACTTCAATCCAGA >Manis_pentadactyla AATGAAAATAATGGAATCTTGGGGATATGTTCCTAAGAATCTAACTTGCTT---TCTGATAACGTTTC-----TTATTTT TCTAGTTTTATTGAGATATAATTGACATACATCCCTGTAC-AAGTTTAAGATGTACAGCATAATGATTTGACTTACACAT AT--TGTGAAATGATTACAGCA-----TTAGGTTAGC--GACCATCA------------ATAATTAACCTTTT---GATC CAGGTCCTGGTATGCTTGGTTTTAACAATAATGTACTTCAATCCAGG >Sus_scrofa AATGAAAACAATGGACTATTGAGGCCAGCTTCCTAAGAATCGGACTTACTT---TCTGTTAAAGTTTT-----------T TCCAGTTCTATTGAAATATAATTCATATACATCAGTGTAT-AAGTGTAAAGTGTACAACATAATGGTTTGATTTACATAT AT--TTTGAAATGATTATTGCAATACATTTAGTTAGC--ATCTATC-------------ATCATTAACCTCTT---GACC CAGTTTCCAGTATGCTTGGTTTGAAGCATAATGTACTTCAGTCCAGA >Bos_taurus AGTGAAAATAATGGAGTTTTGGGACCACCTTCCTAAGAATCTGACTTGCTC---TCTGTTAAC-TAAT----------TT TCTGGTTCTAATGAGATATAATTCACATCTACCAGTGTAC-AATTTGAGGATGCACAACATAATGGTTTGATTTATATAT GT--TGTGAAATGATTATTGCAATACATTTAGTTAGT--ACCCATC-------------ACCATTAACCTTTT---GACC CCATTCCCAGTATGCTTGATTTTAAGCATAATGTACTTCAATCCAGA >Equus_caballus AGTGAGAATAACGGATTCTTGGGGGTGCCTTCCTAAAAATCTAACT---TT---TC-GTCAACCTTTT------TGTTTT TCTAGTTTTGTTGAGTTATAATTGACATACATCACTGTAT-AAGTTTAAGATATACAGTATAATGGTTTGACTTAGATAT AT--TGTGAAATGATTACCACAATGAGTTTAGTTAGC--ATCCATC-------------GCCATTAACCTTTT---GACC CAGCTCCCGGTATGCTTGGTTTTAAAC---ATATAGTTCAATCCAGA >Ceratotherium_simum CGTGAAAATAATGGAATCTTGGGAACGCCTTCCTAAAAATCTGACT---TT---TC-CTTAACCTTTT------TGTTTT TCCAGCTTTATTGAGATATAATTGACATACATC---------------------ACAGCATAATGGTTTGATTTACACAT AT--TGTGAAATGATTACCACAATAAGTTTAGTTAGC--ATCCATC-------------ACTGTTAACCTTTT---GACC CAGCTGCCAGTATGCTTGGTTTTAACCATAATATACTTCAAGCCAGA >Myotis_myotis AGT----------GAATCTTGGGGGAACCTTCTTAAGAATCTGACTTGCTT----------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------TCCATTAACCTTTT---GACC CAGCCCCCAGTATGCTTGATTGTAACCATAATACACTTTAATCCAGA >Rousettus_aegyptiacus AGTGAGTACAGTGGAAT-----------TTTCCTAAGAATCTGACCTGCTA----------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------TCAATTAACCTTTT---GACC TAGCTCCCAGGATGCTCAGTTTTAACTATAATATACTTTAATCCAGA >Condylura_cristata AATGAGTACAATAAAATTTTTGGGCCATCTTCCTAAGGACCTGACTTGATT----------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------TCCATTAACTTTTT---GACC TAGATTCCTAAATGGTTGT----------------CTTTAACCCAAA >Sorex_araneus AGGGAATGCAAAGGAAAATTCAGAATAACTTTCTAAGAACCTGACTTGTTT----------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------TTCATTAACCTTTT---GACC CAGCTCCCAACATGCTTGCCTTTAATCATAATGCATTTCAATCCAAA >Homo_sapiens CATGAATGTAATGGAATCTCGAGGGCACCTTCATAAGAATATGACTTGCTT----------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------TCCGTCAACTTTTT---GACC CTGTTCCCAGTACACTTGGTTTTAATCATAATGTGCTTCCATCCAGA Horse159_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----GTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCACCACACA--CAAAAAAATGGTAACTATGTGAG GTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCT TAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA---------------------------- -------------------------------------------------------------------------------- ------------------------ >Sus_scrofa AAAAACACTTTGCTCTGTGA------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------ATAT-GTTTTGGTCAGATAAAA-------TGC---AAAACAAAGTAGGTTCTAAGTA T-----------GTGGTT-GCTAAGGGAGTAGATATTAAAAATTCTCAT--------AAGAAAAAGTATAAATATGTATG GTGATAG--ATGTTCACTAGACTTACTCTGGTTATCATTTTGAAGTATATACAAATATTGAA---TCATGTTTTATACTT GAAACTAATGTG-----------------------------------------------------------CTAT---AA TAAACTA------TACT--TCATAGAGTTATTAGTTGAAGCTAAACAAGAGA----------------------TTGATA TTAT--------TTAATTGTACTG >Tursiops_truncatus TAAGACACTTCCCTCTCTGA------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------ATAT-CTTTTGGTCAGGTAAAA-TGTATTTGT---AAAACAAAATAGATTCTAAGTA T-----------GTAGTT-GCTAAGAGAGTAGATCTTAAAAGTTCTCATTACA----ATAAAAAACTGTAAATAAGTGTG GTAATGG--ATGGTAACTAGACTTACTGTGGTGATCATTTTGCAGTATATACAAACATCGAA------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---T--------CTTGTTGTTCTG >Equus_caballus AAAGACACTTTGCTCTCTGA------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------ATGT-GTTTTGGTCCGATAAAA-TGCATGTGT---AAAACAAAGTAGATT----GTA A-----------GTAGTT-GCTGAGAAAGAAAACCTTAAAAGTTCTCATCACACAC-ACAAAAATTGGTAACTGTGTATG GTGGTAG--ATGTTAACCAGAC--ATTGTGGTGATCATTTCACAATATATACAAATATCAAATCATTATGCTGTACACCC AAAATCAATATAAATGTTGAATGTCAATTATATCTCAATAAAA------------AAAC-CAAAGTAGGTTCTAT---TA TCAAA--------AACT--TAACATAGTTATTAATTG----------AGAGA----------------------TTGAGA TAAT--------TTAATTCTACTG >Ceratotherium_simum AAAGACACTTTGCCCTCTGA------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------ATAT-GTTTTGGTCAGAAAAAA-AGTATATAC---AAAACAAAGGAGATT----CTA T-----------GCCATT-GCTAAGAAAGTAGATCTTAAAAGTTCTCGTCACAAGAAAAAAAAATTTGTAACTATGTATG GTGATGA--ATGTTAACCAGACTTATTGTGGTGATTGTTGCGCAATATATACAAATATGGAATTGTTATGCTTTATACCT GAAATTAATATA-ATGTTATATGTCAATTATA--TCAATAAAA------------AAAC-CAAAGAACTTTCTAT---TA TCAAAA-------AACT--TAATATAGCTATTAGTTGAAGCTAATCAAGAGA----------------------CTGAGA TAAT--------TTAATTCTACTG >Canis_familiaris AAAGACACTTTA--CTCTGATTTTTTTTTTTTTTCAGTTTTGCTACATTTCAATAGTAGGTATTTCAAGGGATTGTTT-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------TTAGGTC TCATCAGCAACATCAAGCAAGAGACAGTGAGTACCCCACAGGGTACACAGCGCTGCCAAGCACCTTAGAAAATGTATGTG ACTTGGAGAAAATGTAGTTCTGATTAT-GTTTGGGTCAGATAAAC-----TATAT------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------AAAA-CAAAGTAGGCATTAT---TA TTAAAAAAAAAGAAACT--TA----AGCTATCAATTGAAGCTA----AGAAA----------------------CTGAGA TCAT--------TTAATTCTACTG >Felis_catus AAGTACACTTTAAGTTCTGA-----TTTGTTTTTCAGTTTTGCTGTGTTTTAATAGTCGGTATTTTAAGGGATTATTTCT TAGATTTTTTAAATCATTTTTTTAACATTTATTATTGAGAGACAGAGAGAGACTGAGCATGAGCATGGGAGGGGCAAAGA GAGGGAGAAACAGAATCCGAAGCAGGCTCCAGGCTCCGAGCTGCCAGCACAGAGCCCGACACCGGGCTTGAACTCACAAA CCGCAAGATCATGACCTGAACCAAAGTCGGAGGCCTAACCAACCGAGCCACCCAGGCACCCTGGGATTACTTCTTAGATT TTATCAGTAACATCAAACAAAAGGTACTGAGTATTCCACAAGGTACAGGGTGCTGCCAAGCACCTTAGAAAATTTACATG ACTTGGAGAAAATGTGGTTCTAATTAT-GTTTTGGTCAGATAAAC-TGTATGCGT------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------AAAAACAAAGTAGGTACTAT---TA TTAAAAA------GACT--TAAT-TAGCTATTAATCAAAGATG----AGAGG----------------------TTGAGA TTAT--------TTAATTCTACTG >Manis_javanica ----ACACTTTG--CTCTCT------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------AAAT-GTTTTGGTTAGATAAAA-TGTATGCGT------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------AGAA-CAAAGTAGGTACTAA---TA TCAAAA-------CACT--TTATATAATTATTAATTA------------------------------------------- -TAT--------TTAACTCTACTG >Myotis_myotis AGACAC-----------TGA------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------ATAT-GTTTTGCTCAGATAAAA-TTTATGTGT------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------AAAA-CAAAGTA----CTAT---TG TAAAA--------AACT--TAACATAGCTATTAATTGAAGATAATCAAGAGA----------------------T---GG TTAT--------TTAATTCTACTG >Rousettus_aegyptiacus AAAGACACT--GCTCTCTGG------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------ATAC-ATTTTGGCCAGATAAAA-TGTGTGCAT------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------AAAA-CCAAGTAGGTACTAT---TA ACAAAGG------TACTAGTAACAAAGTTACTAATTGAAGATCATCAAGAGA----------------------TTGTGG TTATTTTTGTGGTTAATTCTCCTG >Condylura_cristata CAACACACTTTGCTCTCTGG------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------ATGTAATTTTGGTCAGATGAAA-TTTATGTGT------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------AAAA-----GAAGTTTCTAC---CA TGAAA--------AAAT--GAACATAGTTATGGATTGAAGCTAATCAAATGAAATAGATTATAAAAAATAAAAATTGAGA TTAC--------ATAATC---CTG >Uropsilus_gracilis CAACACACTTTTCTCTCTGA------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------ATATATTTTTGTTCAGATAAAA-TTTATGTAT------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------AAAA-CAAAGTCATTTCTAT---CA TGAA---------AAAT--GAATATATTTATGAATTGAAGCTAAGCAAAAGAATATAGTTAT---------GGATTAAGA TTAT--------TTAATTATACTG >Homo_sapiens CATATCACTTTCCTCTCTGA------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------TTAT-TTTTTGCTCAAAAGAAAAAATATATAT------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------AAAA-CAAAATAGGTTTTAT---TA TAGA--------AAAAT------ACAGTCATTAATTGAAGTTAACCAAGATG----------------------CTGAAT TTTT--------TTAATTCCACAG Horse160_LINE >L1MAB_EC -------------------------------------------------------------------------------- ----------------------------------TTTTTTTTTTTCAGTTTTA-----------TTGAGATATAAT---- TGACATATAAC-ATTGTATTATGTTTAAGGTGTACAACATAATGATTTGATATATGT----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------- >Sus_scrofa AATCACA--TCACACACTAAAAACAACACTGAGCCATAGTGAGAGGTCAGTAAGTC---AGAGATAGCTATTA------- --------------------TTATTTTTTAA-----ATATTTTAAATTTTTTAAATATTTTCAATTGAGATATAGC---- TGACATGTAAC-ATTTTATTA-GTTTGGGGTATTCAACATAATTATTTGCT---------GGAGATAGCTAT-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------TATTATT----T---G-TAA--TTAG----CGTCTCCATGTAAAAGCTCTTCCTTAGTAAAA ATACAC----ACTAAT >Bos_taurus CATCACATGTCAAACGCTAAAAACAATACTCAGCCATGGGAAGAAGTTGGTAAGTC---AAAGATAGCTATGG------- --------------------TAGTTATT-TT-------------------TTA---------AATTGAGATAAAAT---- TGATATATAAC-ATTATATTA-GTTTTGGGCATAGAACATAATGATTTGAT---------AAAGATAGCTTTTTAAAACA ATTTTTTATTGAAGTATAGTCAATTTATAATGTGTTAATTTCTGTTGTACAGCAGAGTGATTCAGTTATATATATATATA TAACACACACACATTTTCTTTTTAAAATATTCTTTTCCACTATGGTTTATCTTAGGATATTGACTTTATTTTTCTTTGCT ATACAGTGTGACCTTGCTGTTTATCCATTCTATTTATAAACGCTTACATCTGCTAACCCCAGCTTCCCACTCCATCCCTC CCCCAACCTCCTCCTCCTTGGCAACCACCAGAGTGTTCTCTACGTCCATGATTCTGTTTCAGAGATAGGCTCACTTGTGT CCTATTTGAGATTCCACAGGAGGTGATATCATATAGTATTTGTCTTTCTCTTTATGACTTACTTCACTTGGCGTGACAAT CTCTAGTTGCATCCATGTTGCTGCAAATGGCATTATTTCATTTTTTTTGTGTGTCTGAGCAGCATCCCATCAAACAGAGG TACTAGGTCTTCTTTATCCATTCATCTGTCGATGGACGTTTAGACCGTTTCCATGTCTTGGCTATTGTGAGTACTGCTGC TATGAACATAGGGGTGCTCGTATCTTTTTGAATTATAGTTTTGTCTGGATATATGCCAGGAAATGGAATTGCCGGATCAT ATGGTAGTTCTATGTTTAGTTTTCTAAGGAATCCCTATATTGTCCCCCACAGTGGCTGCACCAACTTATTCCCACCAACA ATGTAGAAGGGTTCTCTTTTCTCCACAGCCTCTCCAGCATTTATCATTTGCAGATTTTTAAAATATGGCCATTCTGACTG GTGTGAGGTGGTACCTCATTGTGATTTTGAGTTGCATATCTCTAATAATAACGTTGAGCATCTCTTCATGTGCCTATTGG CCAAAAGATAGCTATTATTACTATT---AT---G-TAA--TTAG----TGTTTCTGTGTAAA------------------ ATACAC----CCTAAT >Equus_caballus ACTCATGTGTTGAGCACTGATAACGATGCCCGGCCATGGTAAGAACTCAGTAAGTC---AAAGGTAGCTATTA------- -------------------TTAGTTTTTATT------TCTATTCATTTTCTGG---------AATTGAGATTATATACAA TGATATATAAC-ACTGTATTA-GTTTTAGGTGTACAACAAAGTGATTTGAT---------A--CATGGCTAA-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------AATTATT--------G-TTG--CTAG----TGTTTCCATGGAAAAGCTCTTC---TGTAAAA ATACAG----ACTAAT >Tapirus_indicus AATTGCGTGTTGAGCACTGAAAACAATGCTCAGCCATGGTAAGAACTCAGTGAGTC---AAAGATAGCTATTA------- --------------------TTATTTTTATC----------------TTTTTA----------ATTGAGATATGAT---- -----GATAAC-ATTGTATTA-GTTTTAGGCGTACAACATAATGATTTGAT---------AAAGACAGCTAT-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------TATTATT---TT---G-TAA--TTAG----TGTTTCCATGTAAAAGCTCTTC---TGTAAAA ATATAC----ACTAAT >Condylura_cristata AACTCCATGCTGAGCATTAATAGCGATGCTCAGCCATGG-GGGACCTCAGTAAGTT---AGAACTGGCTACTA------- --------------------TTTTTTAT-TC-------------------TTA---------AATTGAGATACAAC---- TGACCTATAAC-AATGTATTA-ATTTTAATTTTACAAAATAATGATTTGCT---------AAAG---GTGAT-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------TACTCCTAAGCT---GATAACTTTAG----TGTTTCCATATAAAAGTTCTTC---AGTGAAT ATACAC----ATTAAT >Uropsilus_gracilis AGTCA-----------------------------------------TGGGTAAGTC---AAGACCAGTCATTA------- --------------------CTATTTTT-TA----------------TTTTAA---------AATTGAGACATAAT---- TGAT-TGTACCAAATTTATTT-ATTTCATTTGTACCAAATAATGATTTGCT---------AAAGAT-------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------GATTACT--ATT---G-CAA--TTAG----TGTTTCCATA-AGAAGTTCTTC---AATGACT ATACAT----ACTAAT >Canis_familiaris AATCACAT-TCGAGTGCTAAAAGCAATGCTCAGCCATGGTAAGAACTCAGTAAATC---AAAGATAGA------------ ---------------------CATTATT-TC------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------G-TGA--TTAG----TGTATCCATGTAAAAGCTCTTC---AGGAAAA ATACAC----ACTGAT >Felis_catus AATCACAGGT-GAGTGCTAAAAGCAATGTTCAGCCACGGTAAGAACTAAGGAAATC---AAAAATAGC------------ ---------------------TATTATC-TC------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------G-TAA--CTCG----TGTGTGCGTGTAAAAGCTCTTT--GGGAAAAA ATTCAC----ACGCAT >Manis_pentadactyla AATCACATGTCAAGTGCTAAGAACAATGCTCAGTCATGGTAAGAACTCAGTAAATC---AAAAATAGCTATTAT------ ---------------------TATTATT-TT------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------G-TAA--TTAG----TGTTTCCATGTAAAAGCTCTTC---AGTAAAC ATACAT----GGTAAT >Myotis_myotis AATCACGTGTTCAGCATCAAAAACAATGCTCAGCAATGGTAAGAACTCAGTAAATC---AAAGATAGCTATTATTA---- -----------------TTATTATTATT-TT------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------T-TAA--TTAG----TGTTTCTATGTAAAAGCTTTTC---AGTAAAA ATACAC----ATTCAT >Rousettus_aegyptiacus AGTCACATGTTGAGCACTAAAAACAATGCTCAAACATGGTAAAAACTCAGTAAATC---AAAGATAGCTATTATTATTAT TATTATTATTATTATTATTGTTATTACT-TT------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------G-TAA--TTAG----TTCTTTCATGTATAAGCTCTTC---AGTAAAA ATACAC----ACTAAT >Homo_sapiens AAACACATGTTGAGCACAAAAAATAATATACAA----GGTAAGCACTCAGTAAAAC---AAAGATAGCTAT--------- ------------------TATTATTATTATT------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------G-TAA--TTAGTCAATGATACCATGCAAAAGCTCTTC---TGTAAAA AGACATATTGACTAAT Horse163_LINE >L1MAB_EC -------------------------------------------------------------------------------- -----------------ATCAAATCATTATGTTGTACACCTTAAACATAATACAATG-------------------TTAT ATGTCAATTATATCTCAATAAAACTGAAAAAAAAAAA------------------------------------------- ------------------------------------------------------ >Canis_familiaris AATTA------CAAAAAAAGAAATGATAAATT---GCAAGAATAAACAAAA-AGTTACAC---AAGAAAGGAAAGAATAT GTAAGTCA-AATCA------------TTGTGTTTTACACCTT-AAACTTATACCGTG-------------------CTGT ATGTCA---ATATCTCAATAAAACCTTTAAAAAAAAA-------AAGGA-------------------AATAACCA---C ATATACTACTTAGTTTAACAGTGAATAACACAT-----TATATAGGTATCATAA >Felis_catus AATTAAG---------AAGGAAATGATAAATT---GTAAGAATAAACAAAG-AGTCACAC---AAGAAAGGAAATAATAT GTAAGACA-AATCA------------TTATGCTTCAGACCTT-AAACTTATACAGTG-------------------CTAT ATG------ATACCTCAATAAAACCTAAAAAGAGAGAGA-----AATGA-------------------AATAACCA---C ATATACTACTTAGCTTAGCAGT----AACACTT-----TATATAGATATTATAA >Manis_javanica AATTAAA--AATAAAAAAAGAAATGATAAATT---CTAATAAACAATAA---AGTTCTAC---AAAAAGGGAAATAACAT CTAAGTTA-AATCA------------CTAGGATGTACACCTT-AAACTTACATAGCG-------------------CACT CTATCAAATACGCATCAATAGAACTTTACAAAAATAAGAGA---AAGAA-------------------AACAATCA---C ATAAACTGCTTGGCTTAGCAGCGACTAACATTT-----TATGTAAGTACTATAA >Sus_scrofa AAGTAAAGTGGGAAAAGAGGAAATGATAAATT---CCAAGAATACACAGAA-AGTCAAAT--------AGAAAACAACAC A--------AATCA------------TTATGCTT---------AAACTTATACAGTG-------------------CAGG AAGTCAACTATGTCACAATAAAACCTTAAAAAAAAAGA------AATGA-------------------AATAATCA---C ATATACTGCTTGGCTTAGCAGTGCATAACACTT-----TATGTAGACATTAGAA >Bos_taurus TATTAAA--AGCGAAAAAAGTAAATATAAATT---CCAGAAATACATAAAAAAATTGTAC---AAGAAAGGAAATAACAC AGAAGTCA-AATCA------------TTGTGCTGTACATCTT-GAACTTATACAGAG-------------------CTGT AAATCAACTATATTTTAATAAAACCTTAAACAAAACACA-----AATGA-------------------AACAATCA---C ATACACTACTTGGCTTAGGAGTGGATAATCCTT-----TATGTAGAC---ATAA >Equus_caballus AATTAAG----AAAAAAAGGAAACGATAAACT---CTAGGAATAAACAAAA-AGTTGTAC---GAGGAAGGAAATAAAAT ATAAGTCA-AATTG------------TTACGCTGTACACCTTAAAACTTATACAGTG-------------------CTGT ATGTCAATTATATTTCAATAAAACCTTAAAAAAAAAGA------AAGGA-------------------AATAATCA---C ATATACTACTTGGCTTAGCAGTGAGTAACACTT-----TATACAGACCTTATAA >Ceratotherium_simum AATTAAG--AACA-AAAAGGAAATGATAAATT---CTAGGAATAAACAAAA-AGTTGTAT---AAGAAAGGAAATAATAC ATAAGTCA-AATCA------------TTATGCTGTATACCTC-AAACTTATACAGTG-------------------CTGT ATGTCAATTATATCTCAATAAAACCTTAAAAAAAAAGA------AAGGA-------------------GATAATCA---C ATACACTACTTGGCTTAGCAGTGAATAACACTT-----GATGTAGACATTATAA >Rhinolophus_ferrumequinum AATTAA----------GAAGAAATGATAAATT---CCAGA----AACAAAA-AGTTGTAT-------AAGAACATAATAC GTAAGTCAAAATCA------------TTATGCTATACACCTT-AAACTGATACAGCGTTATGTATCATTATGTATACTGT ATGCCAACTACATGTCAATGAAATCTTTAAAAAAGA--------AAGGA-------------------AATAATCA---C ATATATTACTTGCCTGAGCAGTCAATAACACTT-----TATATAGACATTATAA >Rousettus_aegyptiacus AATCAAG----AAAAAAAGTAAATGATAAATT---TCAGGA----ACAAAA-AGTTGTAC-------AAGGAAATAATAT GTAAGTCT-AATCA------------TTATGCTGTACATTTT-ACACTTATACAGTGCCATATGTCACTATATATACTGT ATGTCAACTATATCTCAATAAAACCTTTAAAAAAGA--------AAGGA-------------------AATAATCA---T ATATATTACTTGGCTTAACTGCTGACAACACTTTATTATATATAGATACTATAA >Condylura_cristata AATTAAGATATTAAAAAGGGCAATGATAAATC---CCAGGAGTAAGCAGAC-AGCTGCAC-------------------- -------------------------------------------------------------------------------- --------------------------------------------AAGAACTAAAATAACAGCAATGCTAGTAGTCA---C C-ATATTACTT-GTACAGCTGTAACAAACAAAG-----AATGTAGCTATTTTGA >Uropsilus_gracilis AGTTAAG-AAATAAAAAGGGAAATAATAAATT---CTAGGAATAAGCAGAG-AGCTGAAC-------------------- -------------------------------------------------------------------------------- --------------------------------------------AAGAAAAGTAATTAC---TAAGCTAATAATCA---C T-GTACTACTTGGTACACCTGTGAATAACACCT-----TATGCAGAAATCTTAA >Homo_sapiens CATGAAG-GGGAGAAAAAGGAGATAATAAATAATTCCAGGAATAAACAAAA-AGCTATAT-------------------- -------------------------------------------------------------------------------- --------------------------------------------AAGGA-------------------ACTAACCA---T ATATATTACTTGGCTTAACAGTGAATAATACTT-----TACGTAGATGTTATAA Horse165_LINE >L1MAB_EC -------------------------------------------------------------------------------- -TTTTTTTTTTTCAGTTTTATTGAGATATAATTGACATATAACATTGTATTATGTTTAAGGTGTACAACATAATGATTTG ATATATGTATATATTGTGAAATGATTACCACAATGAAGTTAATTAACACATCCATCACCTCACATAGTTACAAATTTTTT TTTTGTTTKTGTGATGAGAACTTTTAAGATCTACTCTCTTAGCAACTTTCAA--ATATACAATACAGTATTATTAACTAT AGTCACCATGCTGTACATTACATCCCCAGAACTTATT-CATCTTATAAC--TGAAAGTTTGTACCCTTTGACCAACCTCT CCCTATTTCCC----CCACCCCCCAGCCTCTGGCA---ACCACCAATCTATTCTCTGTTTCTATGAGTTTGGTTTTTTTT T------------------------------TTTAGATTCCACATATAAGTGAGATCATGCAGTATTTGTCTTTCTCTGT CTGACTTATTTCACTTAGCATA---------------------------------------------------------- -------------------------------------------------------------------------------- ----ATGC-------CCTCAAGGTTCCATCCATGTTGTCACAAATGGCAGGATTTCCTTCTTTTCTTTTTTATGGCTGAA TAATATTCCATTGTATATATATAC--------------------------------CACATT-------TTCTTTATCCA TTCATCCATCAATGGACACTTAGGTTGTTTCCATRTCTTGGCTATTGTGAATAATGCTGCAATGAACATG-GGAGTGCAG ATATCTCTTCAAGATTAG-------------------------------------------------------------- ------------- >Canis_familiaris GCTTCCTCCCACCACCCCTATTTAAAA-TTTCATGACCTG------TCATTTTGCCA-CTT-----------ATTTTT-- ----------------T-AATTGAGGCATAATTGACA-------TTATATTA-GTTTCCGATGTAC---ATGATAATTCA GTATCTGTACATATCACGAAATCAGCGCTGCAGCAAGTCTA--------------------------------------- ----------------------------ATCTACTGTCTTAGCAACTTTCAA--AAATGCAATATAGTATTACTAACTGT AGGATCCATGCTGTATGT-----CCCCATGATCTACT-TATTCTATAAC--TGGAAGTTTGTATCTTTTCAGCCCCTTCA CCCGTTCTCCCAC--TCTCTACCCCACCCCTAGCAACCACCACCAATCTCTTTTCTGCAT--GTGAGCTT-TTTTTTTTT TCA----GTTATTATTCCATATTTAA-TTAATTTAGATTCTTCATTT-AATGAGATCATAAGGTATTTGCCTTTATCTGT CTGATTTATTTCACTTGATATA---------------------------------------------------------- -------------------------------------------------------------------------------- ----ATGC-------CTTCAAGA-TCCATTTCTGTTAT--CAGATGGCAAGATTTCC--------TTTACTATGGATGAA TGATATTCTATTTTATACACATGTACACACACAAACAGACACACACACACACACATCACATT-------TTCTTTATATA TTCATCCATCGATG---AC--AGTTTGCTTCTGTATCTCGGCTATTATAAATAATGCTG-AGTGAACACAGTGGGTGCAT ATGTCTTTTTG----------CAGGGTTGGTTCCT---AAAGACTGTGTGCA---ATACCTCCCT-GCTCCATCATAACT -GGAGATTTCACG >Felis_catus ATTTCCTCCCACCACCCCTATTTAAAATTTTCATCACCTAAAATTTTCATTTTGCCA-TTT---TAGAATTTATTTAT-- ----------------TTAATTGAGACATAACTGACA-------TTATATTA-GTTTCAGGTGTACAATATAATAATTTG ATAACTGTATATATGATGAAATAATCACTGCAATAAGTCTA--------------------------------------- ----------------------------ATCTACTATCTTAGCAACTTTCAA--ATATGCAACACAATATTACTAACCAT AGGGTCCATGCTGTGCAT-----ACCCATGACTTACC-TATTCTATAAC--TGAAAGATTGGATCTTTTGAGCCCCTTCA ACTATTTGCTCAC--TCTCTAACCCATCTCTGGCAACCACCACCAATCTGTTTTCTGCACAGGTGAGCTTGTTTTTTTTT TTAAATTATTATTATTCCATATTTAATTTAATTTAGATTCTACATTTAAATGAGATAATAAGATATTTACCTTTCTCTGT CTGACTTATTTCACATAGCATA---------------------------------------------------------- -------------------------------------------------------------------------------- ----ATGC-------CCTCAAGA-TCCATCCACGCTGTCACAAATAGCAAGATTTCC---------TTTTTATGGCTAAA TAATACTCCATTGCATGTATGTATACACACACACACACACACACACACACACACA-CACACACACACACTGCATTATCCA TTGATCCATTGATG-ATACTTAGGCTGTTTCCACATCTTGGCTATTGTAAATAATGCTG-AATGAACACAGGGGGTGCAC ATGTCCTTTTG----------TAGGATTCATTTTT---AAAGACTGTGTGCT---ATACGTCCCT-GTTCTATTATAATT -GGAAATTTCACT >Manis_javanica GTTTCCTCA--------------------TTTGTCATAT----------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----TCCCATTGTACCTATATGA--------------------------------CATATC-------TTCTTTATTCC TTCATCCATCAATTGAC----AGTCTGTTTCCATATCTTGGCTACTGCAAATGATGCTGCAATGAACATG---GGGATAA ATATGTTCTCG----------AAGGGCTGGTTCAT---AAACGGCATGTGTT---ATACAAATCTGGTTCCATAATAACT CCCAGATTTCACA >Sus_scrofa GTTTCCTCCTGCCAGCACTATTAA-----TTCATCACCTG------CCATTCTGACA-TTT---CGGGATGGTTTGTT-- --------------TTTCAATTAAGGTATAATTAACA--------TGTATTA-GTTTTAGGTGTACTAAACAATGATGTA ATATTTGTATATACTGTGAAATCATCACCACAGTAAGTCTC--------------------------------------- ----------------------------GTCTACTGTCTCAGCAACTTTCAA--AAACGCAATACAGGATGGTTACCTAT TATCACCATGCTGTACATTACAGCTCCATGACTTAGT-TCTTTGATAAAAGTAGAGGTGTGTGCTTTTTTATCCCTTTAC CTCTTTCACCTGG------------CTCTCTGGCA---ACCACCAATC-GTTCTCTATATCTGACAGCTCTTTTTTTTTT TT-----------------------------TAAAGATTCCATTTATAAGTGAGATCATACAGCATTTGCCTTTCTTTGT CTGACTCACTTTACCTAGCATAGTAAAGAGCACTTTCTTTCTTTGTTATTTTTAATTGTTCTAATTAGAGTGTAGTTGAT TTAGTGTTGTGTCCATTTCTGCTGCACAGCAGAGTCAGTCATTCATACACATACATTCATTTTCTCATATTATCTTCCAT CATGATGAAGATCCCTTTCAAGT-TTCATCTATATTGTTACAAATGGCAAGGTTTTC-----TTCCCTCTCATGGCTGAA TAAGAGCCCAAGGTATTTGTGAAC--------------------------------TACATT-------TTCTTTATCCA -TCATTCATGAATGGACACTTAGGTTGTTCCCATATCTTGACTGGTGTACATAACGCTGCAGTGAACACG---GGAGCAC GTGTCGTTTTG----------CAGGTCTGGTTCTT---AAAGATCATGTGCT---ACAGCCCCCT-GCTCCTTCACAACT -GGGGATTTGACT >Bos_taurus GTTTCCTCCCACCAGCACTACTGATAATTTGCATCACCTG------CCGTTACGACA-TTT---CAGGATT----TTT-- -----------------AAATTAAGGTATAATCAACAAATAACATTATATTA-ATTTCAGGTATACAAC---AAGATTCA ACATTTGTATATATTGTGAAATAATCACCACAAGAAGTCTAGTCTG---------------------------------- ----------------------------GTGTAATGTCTCAGCAACTCTCAAATATATGCAACAGAGTATTGCAAACTAT TGTTACCATGCTGTACATGACACCCCCATGCATT----TCTTTTAT-AC--TGCAAGTCTGTACATTTTCATCACCTGCA TCCACTCGCCTAT--CCCTCACCCTGACTCCGGCC---ACCACCAATCTGTTCTCTGAATCTATAAGAGCCTTTCTTTTT T------------------------------TTCGGAGTCCCTCTAAAATTGAGATCTTACACTATTTGTCTTTCTCTGT CTGATATATTTTACTTAGCATA---------------------------------------------------------- -------------------------------------------------------------------------------- ----GTGAAAATCAGTTTCAAGT-TCCATCTATGTTGTTACAAATGGCAAGATTTCC-----TTCTTTCTTTTGGNNNNN NNNNNNNNNNNNNNNNNNNNNNNN--------------------------------NNNNNN-------NNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNN----------NNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNN >Equus_caballus GTTTCCTCCCAA-ACCACTACTTAGACTTCTCATCATCTG------CCATTTTGCCA-TTT---CAGGATTTTTTTTT-- ----------------TTAATTGAAGTATAATTGACATACAACATTATATTA-GTTCCAAGTGTACAAC---ATGATTCA AGATTTGTTTCTATTCTGAAATAATTACCATAATAAGTGTAGTCTC---------------------------------- ----------------------------GTCTACAGTTTTAACAACTTTCAA--ACATGCAAAACAGTAT---TAAATAT AGTCACCACGTTGTACATCACATCCCCATGACTTATT-TATATTATAAC--TGTAAGTTTGTACC-TTTGACCCTCTTCA TCTATTTTCCCCCCATTCCCACCCCGTCTCTGTCA---ACCACCAATCAGTTCTTTGTATCCATGAGGTTGTCAGTTTAT TTT----------------------------TTTGGATTCCACATATAAATGAGATCCTATTGTATTTGTCTTTCTCTGT CTGACTTATTTCACTTAGCATA---------------------------------------------------------- -------------------------------------------------------------------------------- ----ATGT-------CCTGAAGG-TCCATGCATGTTGTCACAAATGGCAACATTCTC------TTCTTTTCATGGCTGCA TAGTATTCCATTGTATATTTATGC--------------------------------CACATA-------TTCTTTATCCA TTCATCCATTGATGGACAC--AGGCTGTTTCCCTATCTTGGGTATTGTAAACATTGCTGAGATGAACACA-GAGGCACAT CTGTCTTTTCA----------CAGGATTGGTTCTT---AAAGATCATGTGCT---GTACCTCCCT-GCTCCACCCTAACT -GGGGATTTCACT >Ceratotherium_simum GTTTCCTCCCAACACCACTACTTATCATTCTCATCATCTG------CTGTTTTGCCA-TTT---CAGGACTGTTGTTG-- ---------TTTCTTTTTAATTGAAGTATAATTAACATATAACATTATATTA-GTTTCAGGTGTACAACATAATGATTCA ATATTTGTTTATAATCTGAAATAATCACCACAACAAGTCTAGTCTA---------------------------------- ----------------------------GTCTACTGATTTAACAACTGTCAA--ATATGCA--AGAGTATTATTAACTAT AGTCACCATGTTGTACATTACATGCCCATGACTTACTGTATTTTATAAC--TGTAACTTTGACCCTTTTGATGCTTTTCA CCCAT-----------------CCCATCTCTGGCA---ACCACCAATCGGTTCTTTATATCCATGAGCTCGTTTTATTTA TTTATT-------------------------TTTAGATTCCACATATAAATGAGATCATACGGTATTTGTCTTTCTCTGC CTGACCTATTTCACTTAGCATA---------------------------------------------------------- -------------------------------------------------------------------------------- ----AGGC-------CCTCAAGA-TCCATCCATGTTGTCACAAATGGCAAGATTTCC-----TTCTTTTTCATGCCTGGG CAGTATTTTATTGTATATTTATGC--------------------------------CATATA-------TTCTTTATCCA TTCACCCATCGATGGACAC--AGGCTGTTTCCCTATCTTGGGTATTGTAAATATTGCTGCAATGAGCATA-CAGGTGTGT ATGTCTTTTCA----------CACAATTGGTTCTT---AAAGATCATATGCC---ATACCCACCT-GCTCCATCATAACT -AGGGATTTCATT >Myotis_myotis GTTTCCTCCCATTACCACTATTTACAATTCTCATCACTTG------CCAGTT-GCCA-TTT---CAGAGCTGGGTGTT-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------AAATATCTTGTGCCAAAATATCTGCAT-GCTCCATTATAACT GGGGGATATCACT >Rousettus_aegyptiacus GTTTCCTCCCACTACTACTACTTAAAATTCTCATCACTTG------CCATTTTGCCA-TTT---CAGGATTGGGTCTT-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------AAAGATCATGTCCC---ATGCCTGCCT-GCTCCATCATAACT -GGGGATTTTGCT >Condylura_cristata GTTTCCTCCCACTGCCATTATCTACAATTTGTATCACCCT------CTACTTTGCTG-CCT---CAAGATTGTTCTTT-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------AAAGAACACGTGTC----------TCTTGCTCCATCATAACT -GGGAGTTTCACT >Homo_sapiens GTTTCCTCTCTCTACCACCAC----AATTCTTTTCACCTG------ACATTTTGCCATTTT---TGGGA--GGTTTTC-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------AAGGATCATATCCT---ATGCCTCCCT-GCTCTGTCATAACA -GGGGATTTCACT Horse166_LINE >L1MAB_EC -------------------------------------------------------------------------------- -AACCTTGAGGGCATTATGCTAAGTGAAATAAGTCAGACAGAGAAAGACAAATACTGCATGATCTCACTTAT-ATGTGGA ATCTAAAAAAAAAAAACC---------------------AAACTCATAGAAACAGAGAATAGATTGGTGGTTGCCAGAGG CTGGGGGGTGGG------------GGAAATAGGGAGAGGTTGGTCAAAGGGTACAAACT-----------------TTCA GTTATAAGATGAATAAGTTCTGGGGATG-TAATGTACAGCATGGTGACTATAGTTAATAATACTGTATTGTATATTTGAA AGTTGCTAAGAGAGTAGATCTTAAAAGTTCTCATCACAMAAACAAAAAAAAAATTTGTAACTATGTGAGGTGATGGATGT GTTAATTAACTTCATTGTGGTAATCATTTCACAATAT------------------------ATACATATATCAAATCATT ATGTTGTACACCTTAAACATAATACAATGTTAT---------------ATGTCAATTATATCTCAATAAAACTGAAAAAA AAAAA--------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------- >Canis_familiaris TTTTTTT--------------AAAGGGCTCCAGCAACAAGAATTTTCTGACTCTAATC---AAGAGATAAACAAAATA-- -------GAGGACATTATGCTAAGTGAAGTAAGTCAGACAGAAAAAAACAAGTGTCATTCGATCTCACTTAT-GTGTAGA ATCTAAAAACCAAAAAAAGA-----AAAAAAAAAAACCTGAACTC--AGATCAAAAGCAGTGATTGTTGATTGCAGGAGG TA-GGAAGTAAG------------CAAAAT-GATTGAAGGTGCTCAAAACACACAAACT-----------------TCCA GTTATAAAATAATTAAGCCATGGGGATG-TGATACACAGCATGCAGACTATAGCTAATAACACTACACTGTATGTTTGGA AGCTGCTAAGAAATCAGATCTCAAAAATTTTCATTACA-----AGAAAAAAAATGTGTAAC--TGTATGGTAATGAA--T GCTAACCAGAC--ACTGTGGTGATCATTTTGTAATA-------------------------ATACAAATATCAAATCATC GCACTGTTTACCTGAAAC-TAACATAATGTTACACATTATGTTACATAATGTTAATTATCTCTC---------------- --------AAAAA-------TCAACAA---AATAAAAG-----ATACTTGAGCTACCTTCT----GAATCTT-TC----- -------------------------------------------------------------------------------- -----------------------------------------------TTGCTGACC-----AAGACCTGTG >Felis_catus TTTATTTTTT---------AAAAAGGGTTCTAGCAACAAAAATTTTCCAACTCCATTC---AAGAGATAAACAAAACA-- -------GAGGGCATTATGCTAAGTGAAACAAGTCAGA--GAGAAAGACAAATACTGTATGATCTCACTTAGAATGTGGA ATCTGAAAACCAAAAAGA-----------ACAAACACCTGAACTC--AGATAAAAAGAAGTGATTGGTGGTTGCCAGGAG TAGGAATGTGGG------------CAAAAT-GATCGAAGGTGGTCAANNNNNNNNNNNN-----------------NNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN------------------------NNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN---------------- --------NNNNNNNNNNNNNNNNNNN---NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN----- -------------------------------------------------------------------------------- -----------------------------------------------NNNNNNNNNNNNNNNNNNNNNNNN >Manis_pentadactyla TTTTTTTC--------------AAAGGCTCTAGCAACAAAAATTTTCCAACTGCAATC---AAGAGATAACCAAAGTA-- -------GAGGGCATTATGCTAAG---------TCAGACTGGAAAAGACAGATACCATATGATCGTACTTAC-ATGTGGA ATCTAAAACA-----------------------------AAACTTACAGACACAGAGACCAGATTGGTGGTTGCCAGAGG CA-GGGGTTGGA-----AGATGGGCAAAGT-GGTTGAAGGTGGTCAAAAGGCACAAACT-----------------TCCA ATTATGAA----------------GATA-CAATGTACAGAATGGTGACA-GAGTTAACAATACTATACTGTATATTTGAA AATTGCTAGGAGAGTAGATTCTGAAAGTTCTCATCACAA----GAAAAAAACATTTGTAACTCTGT--GGTGAAGGA--T GCTAACTAGACTTACTGTGGAGATTATTGTATAATAT------------------------ATACA-ATATTAAATTAT- ----TCTACACCTAAAAC-TAATATAATGTCGT---------------ATGTCAATTATCTCTCAAAA------------ --------AAGAGAAAGAAAACAAATA---AATAAAAG-----GTACTTGAGTCACCTTC---------CTT-TT----- -------------------------------------------------------------------------------- -----------------------------------------------CTGCTGACTTTAGAAAGACCCTTG >Sus_scrofa TTTTTCTTTTCT-------GGAAAGGGCTTTAGCAACAAAAGAGTTCCAACTC----C---AAGAGATAAACAATATA-- -------AAGGGCGTTATGCTAAGTGAAATAAATCGGACTGAGAAAGACAAATACCATATGATCTCACTTAC---GTAGA ATCTAAAAAAGAAAAACA----------------AAACCAAACTC--AAATACAGAGAACAGACTGGTGGTTGCCAGACA CA-GGGGGTGGA------------TGAAAT-GGTTGAAGGTGGTCAGA-GGTACAAACT-----------------TCCA TTTGTAAAATAAATAAATGATGGAGATGCCAGAGTACAGCATGATGACT-CAGCTATTACTACTA-----TATATTCAAA AGTTGCTAAGATTATAGATCTTAAAAGTTCTCATCACATG---AAAAAAAAAATCTGCAACTATGTGTGGTGATGGA--T GCTGACTAGACTTA---TAATGATCACTTTGGAATAT------------------------ATATAAATATCAAATCATT ATGTTGTCTCCCTGAAAC-TAATATAATGTTAT---------------ATATCAATTATATCTCAA-------------- --------AAGAGA------TAAAATA---AATAAATG-----ATATTTGAGCCTCCTTCTGAAAGAACCTTCTT----- -------------------------------------------------------------------------------- -----------------------------------------------TTGTTGACTTTTGGAAGACTCATT >Bos_taurus CTTTTTTTTTTTTTTTCCTGAAAATGGTTCTAGCAACAAAA-TTTCCCAGCTC----T---GAGAG-TGAACAACATG-- -------GAGGGCATTACACTAAGTGAAATAAATCAGCCTGAGAGAGACAAATACTGTATGATCTCACTTAT-ATGTGGA ATCTAAAAAAAAAAAAAAAAATCACACAAACAAAAAAATGAACTC--AGATACAGAGAATAGACGGGTGCTTGACAGAGG CAGAGGGGTGTGCACCGGGATGGACAAAAT-GGTTGACTGTGATCAAAGGTCACAGATCAAAGGTCAAAGGTCATACTTA CTTATAACATAAGTCAGTCACGGGGATG-CAGTGTACAGCATGGTGACT-TGATTATTAACACTCTATTGTATATTTGAA AGTTGCTAAGATAGTGGGTCTTCAAAGTTCTCACCAC------AAGAAAAAGATTCTTCACTGTGTATAGTGGTGGA--T GCTAATTAGACTTG---CGGTGATAGTTCTAGAATACATTTCCCTCCTCAGTTTTAAATACATACAAATATCAAATCATT ATGTTAGATACCTGAAAC-TAATGTAAT--------------------ATGTTGATTACATCTCAAAAAAAAA------- --------AAGAGA-----------TA---AATAAAAG-----ATACTTGAGCCTTCTTCTGAAAAAAACCTCACT---- -------------------------------------------------------------------------------- -----------------------------------------------TTGCTGACTTTTGAAAGAACCCTT >Equus_caballus TTTTTTT------------AAAAAGGGATCTAGCAATAAAAATGTTCCAGCTCCAATC---AAGAGATAAACGAAATA-- -------GAGGGCATTATGCTAAGTGAAATAAGTCAGACTGAGAAAGACAAATACTCTATGACCTCAAGTAC-ATGTGGA ATCTAGAAAAACAAAACA---------AAACAAAAACCCAAATTCATAGATACAGAGAATAGATTGATGGCTGCCAGAGG CAAGGCGTTGGG----GGAGTGGGTGAGAT-GGGTAAAGCAGGTCAAAAGATGCAAACT-----------------TCCA GCTATAAAATAAGTCAATCATGGGGATG-TGGCATACAGCATGATAACTAGAGT---TAATACTATACTGTAAATTTGCA AGTTGCTAAGAGAGTAGATCTTAGAAGTTCTCATCATAA----GAAAAGAGAATTTGTACCTATGTGCGGTGATGGA--T GCTAACTAGACTTCTTGTGGTGATTATTTCGCAATAC------------------ATACAAATACAAATATTGAATCATT ATGTTGTACACCTGAAAC-TAATGAAATGTTAT---------------ATGTCAATTGTAGCTCAAAAA----------- --------AAGAGGT--AAACAAAATA---AATAAAAG-----ATACTTGAGCCACCTTCTGAAAGAATCGTTTT----- -------------------------------------------------------------------------------- -----------------------------------------------TTGCTGAGTTTTGAAAGATT--TT >Ceratotherium_simum TTTTTC---------------AAAGGGCTCTAGCAATAAAAATTTTCCAGCTCCAATC---AAGAGATAAACAAACTA-- -------GAGGGCATTATGCTAAGTGAAATAAGTCAGACTGAGAAAGACAAATACTCTATGATCTCATTTAT-ATGTGGA ATCTAAATAAAAACAACA---------------------AAGTGCATAGATACAGAGAATGGACTGATGGTTGCCGGAAG CA-AGAGGTGGG---GAGAGCATGTAAGAT-GAGTGAAGG-GGTCAAAAGATACAAACT-----------------TCCA GGTGTAAAATAATTAAGTCATGCAGATG-CAAAGTACAGCATGGTAACTATAGT---TAATTCTATATTGTAAATTTGAA AGTTGTTAAGAGAGTAGATCTTAAAAGTTCTCATCACAG----GAAAAAAGAATTTGTGTCTATGTGTGGTGATGGA--T GCTAACCAGACTTACTGTGGTGATTATTTCACAATAC------------------ATACAAATACAAATATTGAATCATT ATGTTGTACACCTGAAAC-TAATAAAATGTTAT---------------ATGTCAATTATGTCTCTAAA------------ --------AAGAGAT--CAACAAAATA---AATAAAAG-----ATCCTTGAGCCACCTTCTGAAAGAATCTTCTT----- -------------------------------------------------------------------------------- -----------------------------------------------TTGCTGACTTTTGAAAGATTCAAT >Myotis_myotis TTTTTTTT------------AAAAGGGCTTTAACAACAAAA-CTTTCCAATACCAATG---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------AAGTGAT------AAAATA---AATAAAAG-----ACTTTTAGGCCACCTTCTAAGAGAACTTT-TT----- -------------------------------------------------------------------------------- -----------------------------------------------TTGCTGATTTTTGAAAGACCTATT >Rousettus_aegyptiacus TTTTTTTTTT------GAGGAAAAAGGTTCTAACGACAAAAACTTGCCAACACCAGTG---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------AAGCGAT------AACATA---AATAAAAG-----TATTTTAGGCCACCTTGTAGAAGAACATTTTT----- -------------------------------------------------------------------------------- -----------------------------------------------TGACTGACTTTTGAAAGACCCACT >Condylura_cristata TCTTTTT-----------AAAAAGGAGCTCTAGCAAAAAAAAGTTTCCAACTCGAATC---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------AAAATAT---AAAGAAAAA---AAT--AAGAAAACATAGTTGAATCACCTTCAGAAAAAAGTA--TT----- -------------------------------------------------------------------------------- -----------------------------------------------GTGCTGACATTTGAAAATCCCATT >Erinaceus_europaeus TAC-----------------AAAATGCCTCTAGCAACAAGAAATTTCTGGTTCTAATC---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------AAGAGAT------AAAATA---AATACAAG-----GTATTTGGATCACCTTC--TATAAATCTTTTTTTTTG AGGATTAAAAGTATTTATTTATTAATGAGAAAGAAATGAGAAGAGAGAATCAATACATTATTGAACTTGTGACCTCAAAT TTTGAGAATCCAACTCTTTATCTACTGCATTACCTCCTTGGTTACTCTTGTGGATTTATGAAAGACAGAAT >Homo_sapiens TACT----------GAGAAAAAAAGGGCAC-AGCAACAAAAATGTTCTAGTCCCAATC---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------AAGCGAT--AAACAAAATA---AACAAAAG-----ATATTCAAATCAACTTT--AAAGAACCTGTTT----- -------------------------------------------------------------------------------- -----------------------------------------------TTGCTGAGTTTTGGAAGAAACATT Horse167_LINE >L1MA9 ----------------------------------------------------------------------------TTTA TTGAGGTATAATTGACAAATAAAAATTGTATATA---TTTAAGGTGTACAACGTGATGTTTTGATAT--------ACGTA TACATTGTGAAATGATTACCACAA-TCAAGCTAATTAACATATCCATCACCTCACATAGTTACCATT--TTTTTGTGTGT GGTGAGAACACTTAAGATCTACTC-TCTTAGCAAATTTCAAGTATACAATACAGTATTATTAACTATAGTCACCATGCTG TACATTAGATCTCCAGAACTTATTCATCCTGCATAACTGAAACTTTGTACCCTTTGACCAACATCTCCCCATTTCCCCCA CCCCCCA-------GCCCCTGGCAACCACCAT----TCTACTCTCTGCTTCTATGAGTTTGACTTTTTT----------- ---------------------------------------------------------------- >Canis_familiaris ATGGAATTAGTTACATATTTTCATATCTGCTTTCAAAATAGTATTGACTA---T-ACTTT-TGAACTCTTT-----TTTG TGGAGGTATAAACAACATGT-AATTTTATATTAG---TTTCAGGTGTACAATGGAATGTTTTGATAT--------TTGTA TATATTGTGAAATGATTCCCATGG-TAAGTCTAG------------TCACTATGCCAAGGAACAATT--CTTTTTCTCAT GATGAGAACTTATAAG-TCAATTC-TCTTGTCGGCCTTCAAATATATAATACGGTATTGTTAGCTGTAGTCACAACTCTG TATATTACATCCCCAGGACTTATTTATTTTA--TAACTGTAAGCTCGTACCTTTTGAC------CACCC-ATTTATCCAA TCCTCCACCCTC-TGCCTCTGGCAACCATTAT----TCTGTTCTCTGTATCTCTGAGTGTGGTT--------TTATTTTC TAAAGTCTTC---AGTCCCGAAGAATTTCTTGTGTTTTGCCCC-ATGAGCTTAGATGACCTTTG >Felis_catus ATGGAATCAATTACACAATTTCACACCTGCCTTCAAACTAGCATTGACTA---T-ATTTTTTGAAATCCCT---CTTTTA TGGAGGCATAATTGACGTGT-AACATTATATTTGTTATTTCAAATGTACACCACCATGATTTGATAC--------TGTTA TATATTATGAAATGGTTCCCACCA-TAAGTCTAG------------GCTCCATGCTTAGGTATAATT---TTTTCCTTGT GGTGAGAATTTTTAATATCTACTC-TCCTGGCAACTTTCAAATAGACAATGCAGTATTGTTGACTACAGTCACCATGCTA TATATTACACCCCCAAGACTTATTTATTTTA--GAACCAGAAGTTTGTACCTTTTGACCCACTTCACCC-ATTTCCCCAA TCCTTCAACCACATGCCTCTGGCAACTACCAACCATTCTGTCCTCTGAATCTACGAGTTTGGTT--------TTATTTTC TGAAGTCTTC---AGTCTTGAAGAATTTCTTGTGTTTTGACCCAAAGGGTTTAGACGCCCTTTG >Sus_scrofa ATGGAATCAGTCACATGATTTTACATTTTCCTTCAAACTAAAGTTGATTA---T-ATATTCCGAAGCCTGT-----TTAA TTGAGGTACAATTGACATAT------TGCA-------TTCCAGGTATACAACATTGTGATTCAATAT--------TAGTG AATATTGCAAAATGAACACCACAG-TAAGTCTAATTAAC--ACACATCATCATGTGCATTTACAGCTATTTTTTGCTTGC CATGAAAAC--TTAGGATTGATTC-TCTTAGCAACATTCAGATATGCACAACCGTATTAATA---------ACAATGCTG TGTATTGCATCCCCAGGACTTAATTATTTTC--TAACTGGAGGCTTGTATTTTTCGATCCTCTTCACCC-CTTTTGCTGA GCCCCCACCCCTCCACCTTTGGCAACTGCCAA----TCTTGTCTCTGTACCTATGCGTTTGGCT--------TCATTTTC TGAAGACTTT---GGTCCCAAAGAATTTCTTGTGTTTTGCCCT-ATGAATTTAAATTGTCTCTG >Bos_taurus ATGGAATCAGGCACATGATTTTCTATTTGCTTTCAAACTAGTATTGATTA---T-ATTTGCTGAAGCATTT-----TTTA TTGAGGTATGATTGACATGT-AACAGTATATTAG---TTCCAGGTGTACAGCATAATGATCCAATAT--------TTATG TATATTGCAAAATGATCACCACTGTTAAGTCTGGTTAAC--ATCAATCACCATAGAGATTTATACTT-GTTTTTGCTTGT GATAAGGACTTTTACTATTGACTC-TCTTAGCAACTTCCAAATGTGCTCTACAGTATTATTAATTACAGTCACCATGCTG TACATTGCATCCCCATGATTTACTTATTTTA--TAACTGGAAGTTTTTATATTTTGACCTGCTTCACCC-ATTTTGTTCA TCCCCCACACCTCTGCCTTTGGCAGCTGCCGA----TCTCTT-----TATCTATGAGTTTGGTT--------TCATTTTC TGAAGTTTTT---AGTCCCAAAGAATTTCTTGCATTTTGCCCCCATGAGTTTAGATTGTCTATG >Equus_caballus ATGGAATCAGTCACGTGATTTTCTATTTGCCTTCGAAGTAGTATTGATTA---T-ATTGCCTGAAGTCTTT---C-TTCA CTGAGATATAATTGACATAT-AACATTATATTAG---TTTCAGGTGTACAATATAACGATTCAAGTTTTTTTATATTATA TATATTGTGAAATGATCACCACAA-TAAGTCTAGTTAAC--ATCTGTCACCACACACAGTTACAAAG-TTGTTTTCCTGT GGTGATAACTTTTAAGATCTACTC-TTTTAGCAACTTACAAACAGGAAATACAGTATTATTAACTATAGTCACCATGATG TACATTACGTCCCCATGACTTATTTATTTTG--TAACTAGAAGTTTGTACCTTTTGGCCCCCTTCACCC-ATTTTGCCCA TCCCCCACTACCCCACCCCTGGCAATCACCAG----TGTGTTCTCTGTATCTATGAACTTGGTT--------TTATTTTC TGAAGTCTTT---GGTCCTGAAGAATTTCTTGTGTTTTGACCC-AAGATTTTAGATTATCTCTG >Ceratotherium_simum ATGGAATCAGTCACATGATTTTATATTTGCTTTCAAAGTAGTATTGATTA---T-ATTTCCTGAAGTCTTT---C-TTTA TTGAGATATAATTGACACAT------TATATCGG---TTTCAGGTATACAACATAACGATTCAAGGT--------TTGTA TGTATTGTGAAATGAT---CACAG-TAAGTCTAGTTAAC--ATCTGTCACCACACATAGTTGCAAAT-TTTTTTTCTTGT GATGACAACTTTTAAGGTCTACTCTTTTTAGCAACCTACAAATATGCAATACAGTGTTGTTAACTATAGCCACCATGCTG TACATTGCATCCCC-TGATTTATTTATTTTG--TAACTAAAAGTTTGCACCTTTTGACCCTCTTCACCC-ATTTTGCCCA CCCCCCACTCCC-CACCTCTGGCAACTATCAA----TCTGTTTTCTGTATCTATGAACTTGGTT--------TTATCTTC TGAAGTCTTT---AGTCCTGAAGAATTTCTTGTGTTTTGCCCC-ATGAGTTTAGATGATCTCTG >Myotis_myotis GTGAAATGAGTCACTTCATTTTATATTTGCTTTT------GTACTGA-TA---TTATTTCCTAAAGTTTTT--------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------GGTCCTGAATAATTTCTTGTGTTTTGCCCC-CTGAGTTTAGATGATCTATG >Pteropus_vampyrus CTGAAATAAGTCACATGATTTTATATTTGCTTTT------GTATTGATCA---TTATTTTCTGAAGTCTTT--------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------AGCTGTGAATAATTTCTTGTGTTTTGCCCT-ACAGGTTTAGATTATCTCTG >Condylura_cristata TTGGAATCAGTTACCTTATTTTATATTCACTTTCAAAC-AGTATTAATTA---TTATTTTCTACA--TTTT--------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------AGACCTGAA-ATTTTCTTGTGTTTTGTCTT-ATATGATTACATG-TC--TG >Scalopus_aquaticus TTGGAATCAGTTATCTGATTTTATAAT-ACTTTCAAAC-AGCATTGATTA---TTATTTTCTAAAGTCTTT--------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------AGAGCTAAA-ATTTTCTTGTGTTTTGCCTT-ATGAGAGTAGATA-TCTTTG >Homo_sapiens ATGGACTCA------TGATTTTATATGTACTTTCAAACTAGCATTCATTG---TTATTTTCGGAAGTCTTT--------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------AGTCCTCAATAATTTATTGTGTTTTGCCCC-ATGGGTTTAGATTATCTTTG Horse174_LINE >L1MB8_3END ----------------------------------------------------------------------------TTTT TTAATAGCTTTATTGAGATATAATTCACATACCATACAATTCACCCATTTAAAGTGTACAATTCAATGGTTTTTAGTATA TTCACAGAGTTGTGCAACCATCACCACAATC-ATTTTAGAACATTTTCATCACCCCCAAAAGAAACCCC-GTACCCATTA GCAGTCACT--CCCCATTCCCCCTTC----CCCCCAGCCCCAGGCAACCA------------------------------ -------------------------------------------- >Canis_familiaris AATCTGTCCCAATACAAATATGTGGTCT---TATTATCTAAGACAGACTTACT---ACCATCTATTTCTATC----CTTG ACAATAGCTTCATTGTGCCATAATTT-CATACTATACAATTCATCAATTTAAACTGCACCACTCAATGGTTTTTAGTATA TTCAC--TGTTACATATCCATCA-CACAATCAATTTTAGAACATTTTCATCACCCCAAAAAGAAATCCA-AGAACCATTA GCAGTTATT--CCCTGTTGCTCCACAAAT-CCCTCAAACCTA-----------GGCATCTA-TTTCTTTT---GTAACTT CTTATTCCCCTGCTGAGCTCATGACTGTGCTGCAGACA-ATATA >Felis_catus AATCTGTCCCAATCCAAATATGTGGTCT---CATTATCTAAGTCAGGCTTACT---GCAACCTATTTCTACT----TTTT ATAACAGCTTTATTGTGCCATAATTTATAAACTATACAACTTTCCAATTTAAACTGTATAGTTCAGTGGTTTTTAGTATA TTCAC--TGTTATACACCCATCACCACAATCAGTTTTAGAACATTTTCATCACCCCAAAAGGAAACCCAGATAACCATTA GCAATCATT--CCCCGTTTCTACACAAAT-CCCCCAAACCTA-----------GCCATCTA-TTTCTTTA---ATGAC-T CTTACTCTCCTGCAGAGCTAGTCACTATGCTGCAAATA-ATATA >Manis_javanica AATCCATCCAAATCCAAAAATGAGGTCTTACTACTACCAAAGACATGCTCAAT---GCCATCTATTTCATTT---TTTAT ATAATAGCTTTATTGTGATATAACTCACATACTGTGCAATTCACCAATTTAAACTGGACAAACAATGGTTTTTAGTTATA GCCTCAGAGTTATGCATCCATCACTACAATCATTTTTAGAACATTTTCGTCACCCCATAAAGAAACCTC-ATAACCATTA GCAGCCATT--CCCCATTTCTACCCAAAC--CCCCAAACTTG-----------GCCATCTA-TTTCTTTT---ATGACTT CTTTT------------------ACTATGCTGCATATATATATA >Equus_caballus AATCTGTCCCAACCCAAAAATGTGGTCT---TACTATCTAAGAAAGGGTCAAT---GTCATCTATTTCTTTT---TCTTT ATAAAAGCTTTATTGTGACGTAATTCACATACCATACAATTCACCAATTTAAACTGTACAATTCAACAGTTTTTAGTACA TTCACAGAGTTTTGCATCCATCACCACAATCAATTTTAGAACATTTTCATTACCCCAAAAAGAAACCTC-ATAACCGTTA GCAGTCATTCCCCCCATTTCTATCCAAAC-CCCCCAAACTTA-----------GCCATCTA-TTTCTTTT---TTGACTT CTTGTTCTCCTACAGAGCTAATCACTACGCTGACAACA-ATATA >Ceratotherium_simum AATCTGTCCCAATCCAAAAATGTGGTCT---TACTATCTCAGACAAGCTCGAT---GCCATCTATTTCCTTT---TTTTT ATAAAAGCTTTATTGTGACATAATTCACATACTACATAATTCACCAATTTAAACTGTACAGTTCAACGGTTCTTAGTATA TTCACAGAGTTTTGTGTCCATCACCACAATCAATTTTAGAACATTTTCATCACCCTAAAAAGAAACCTC-ATAACCATTA GCAGTCATT--CTCCACTTCTGTCCAAAC-CCCCCAAACTTA-----------ACCATCTA-TTTCTCTT---GTGACTT CTTGTTCTCCTACAGAGCTAATCACTATGCTGCAAACA-ATATA >Condylura_cristata ACT-TAGCCCAATACAAACATGTGCTCT---TATTGTGTAAGATAAACTCAAT---GTCATCTA----TATT----TTTT ATAACAACCTCATTGAGACACAACTCACATATTATAGAATT--TCAATTTAAACTAAACAAA--------GTTTAGTATC TTCAG--AGTTATGCATCAAGCACCATAATCAATTTCAGAACATTTTCATCACTCTAAAAAGAAACCTC-CTGGCCATGA ATATTAACT--TCCCATTT-TACCCAAAC-CTGCCAAACTTA-----------GCCAACTA-TTTCTTCT---GTAATTT -----TCTTGAGCAGAACTTACCATTATGCTATATATA-AAATA >Erinaceus_europaeus AATCTT------TTCAAAAATGTGACCT---GACTAGCTAAGCTAGACTAAAG---GTTATATTTCTTCCTT---TTCTT ATAACAGCTTTGTGAAGATATG-------------AAATTTCACCAACTGAAATTGTGCAACCAAATGGTTTTTCATAAA ------------AGCCTTTACCACCATGATCCACTTGAGAGCATTTTTATCCTCCCCCAAGGTAATCCC-ATAGTCACTA ACATCCATT--CCCTCTTTCTACCCAAGCTTCCCCAGAATGA-----------ACCA-CTG-TTTCTTTA---GTAATTT ATGTTTCCCCTGCAGACTTCATCACTGTACAGTAAAT--AAACA >Sus_scrofa GATCTGTCCTGATTCAAAAATGTAGTCT---TACTCTCTAACCCAGCATCAAG--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------GTCATCTA-TTTCTTTG---GGGACTT CTTATTTTCCTGCAGAGCTAATCACTATGCTACCAATA-ATATA >Tursiops_truncatus AGTCTGTCCCGATCCAAAAATGTGGTCT---TGCTATCCAACCCAGGTTCAAT--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------GTCATCTATTTTCTTTT---GTGACTT ---ATTTTCCTGCAGAACTCATCACTATGCTGCAAGTA-ATATA >Myotis_myotis ------TCCCCATCCAAAAATGTTGTTT---TACTACCTAAGACAGATTCCAT--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------GCCATCTA-TTTCTTTT---GTGACTT CTTATTTTCTGGCAGAGCTT-------TGCCACAAATC-ACATA >Rousettus_aegyptiacus AGTCTGTCCCAGTCCAAAAATGT----------------------GGTTCAAT--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------GCCATCTA-ATTCTTTT---ACGACTT CTTATTTTCTTGCAAAGCCAATCACTATGCTGCAAATA-ATATA >Homo_sapiens AACCTGCCCCAATCCATACATGTG-CCT---TGCTATATAAGACAGTTCCAAT--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------GCCCTCTA-TTTCTTTT---GTTACTT CCTACTACTCTGCAGAGCTAATCATTCTCCTGCAAATA-ATATA Horse175_LINE >L1MAB_EC -------------------------------------------------------------------------ACACCTT AAACATA---ATACAATGTTATATGTCAATTATATCTCAATAAAACTGAAAAAAAAAAA--------------------- --------------------------------------------------------- >Canis_familiaris CAAAACTGTAC-TTTCATCTTTACTTTGCTGCTGGATGAAATCGTT--ATATT---AGGAATTATTTTTA---------T AAAT-TT---ATGCAATGCTATATGTCAGTTACATCCCAATAAAACTGAAAAAAAA------TTAAA---AAGAATTATT GTCA---GATAATAGTATAAAACCTTTAGGGCCAGAATCTTAGCATTTGTATTTCTT >Felis_catus CAAAACTGTAC-TTTCATCCT------GTTGCTGGATGAAATCGTT--ATATT---AAGAATTATTTTTA---------T AAAC-TC---GTACAGTGCTGAATGTCAATTACATCTCAATAAAACTGTAAAAAAAAT----TTAAA---AAGAATTATT TTCA---GATTACAGTATAAAACCATTAGGTCCAGAATCGTAGCATTTACATTTCTT >Manis_pentadactyla AAAAACTGTCC-TTTCATCCTTACTTGGCTGCTGGATGAAACAGTTTCATATT---AAGAATTATGTTCA---------T AAAC-TT---ATAAAATGCTGTATGTCAATTACATCGCAACGAAATTGGAAAAAATAAA---TAAAA---AAGTATTATT TTCA---GATTACAGTATAAAACCTTCAAGGCCAGAATCTTAGCATTTGTATTTCCT >Equus_caballus TGAAATTGTAC-TTCCATGCTTACTTTGCAGCTGAATGACATAGTTTCCTAAT---AAGTATTATTTCCA---------T AGAC-TT---ATACAGTGCTTTATGTCAATTACATCTCAATAAAACTGGGGG----------AAAAA---GAATGGAACT TTCG---GATTATATTATAAAACCTTTAAGGCCAGG-TCTTAGCATTTGTATTTCTT >Ceratotherium_simum CAAAACTGTAT-TTCCATCCTTACTTTGCTGCTGGATGAAATAGTTTCATATT---AAGAATTATGTTTA---------T AAAC-TT---ATACAGTGCTGTATGTCAATTACATCTCAATAAAACTAGAAAAAAAGAATGGAAAAA---AAGAATTATT TTCA---GATTACATTATAAAACCTTTAAGGCCAGAATCTTAGCATTTGTATTTATT >Condylura_cristata CAATGCATAAC-CTACATCTT----TTGCTGTTAAGTAAAATAGTCCCATATT---AAGAAATAATTTTA---------T GAAC-TT---ATACAATGTTATATATCCACTGAATCTCAGGAAATTGAAAAC-------------AA---AATAATTATT TTCA---GATTATACTATCAAAGCTTGAAGTTCAAAAATTT-GAATATGTATTTCTT >Solenodon_paradoxus CAAAATTGTACGTTCTATTTTTGCCTTTCTGCTAGAGGAAATACTTTCATAAT---AA---TT-TTTGTA---------A AAAAATTGTTATACAGTGTTATATGTTAATTACATCTCTATGAAATAGAAATAAAATAA---TTAAA---AAAAA----T TTCA---GGTTATACTGCAAAATCTGTAAG-CCAGATTCTTAGCATACATATTTATT >Sus_scrofa CAAAACTGTAT-TTCCATCCTTGATTTGCTGGTGGATAAAATAGTGTCATATT---AAGAATTA-TTTCA---------- -------------------------------------------------------------------------------- -------GATTATGCTAAAAAATCTTTAAAGCCTCACCCTTAGCATTTATATTTATT >Tursiops_truncatus CAAAAC------TTTTATCCTTGCTTTGCTGCTAGATAAAATAGCATCATATT---AAGAATTATTTTCA---------- -------------------------------------------------------------------------------- -------GATTATATTACAAAATCTTTAAAGGCTGAATCTTAGCATTTGTATTTCTT >Myotis_myotis CAAAACTATGT-TTTCATCTT----TTGCTTGTGGATGAAGTAGTTTTATATT---AAGAATTATTTTTT---------- -------------------------------------------------------------------------------- -------GATTACCCTACAAAACATTTA-------------------------TCTA >Rousettus_aegyptiacus CAAAACTATAC-T---ATACTTCTATCTTTACTGGATGAAATAGTTTTATATT---AATAATTACTTTCA---------- -------------------------------------------------------------------------------- -------GATTTCACTATAAATCCTTTAATGCTCAAATTTTAGCATTTGTATTTCCT >Homo_sapiens CAAAACTGTAC-TT-CACCTTTATTTTATTGCTGGATGAAATTTT-TTGTTTT---CAGAATTATTTTCA---------- -------------------------------------------------------------------------------- -------GACAATACTGT-AAATTTTTATGGCCAGAATCTTAGCATTTGCATTTTTT Horse181_LINE >L1MB2_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------AAGGTGGAAGCAACCCAAGTGTCCATCGACGGATGAATGGATAAACAAAATG TGG---TATATACATACAATGGAATATTATTCAGCCTTAAAAAGGAAGGAAATCCTGNCACATGCTACAACATGGATG-- -AACCTTGAGGACATTATGCTAAGTGAAATAAGCCAGTCACAAAAAGACAAATACTGTATGATTCCACTTATATGAGGTA CCTAGAGTAGTCAAATTCATAGAGACAGAAAGTAGAATGGTGGTTGCCAGGGGCTGGGGGGAGGGGGAAATGGGGAGTTG TTGTTTAATGGGTATA-GAGTTTCAGTTTTGCAAGATGAAAAAGTTCTGGAGATCGGTTGCACAACAATGTGAATATACT TAACACTACTGAACTGTACACTTAAAAATGGTTAAGATGGTAAATTTTATGTTATGTGTNTTTTACCACAATTAAAAAAA -------------------------------------------------------------------------------- ------------------------------------- >Equus_caballus TTTCTTAAACACAGTTGGCCTCTGCCTGCCTAGTTGTCAGAGA---GGCT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----GTGATG---AAAATGGCTTCC-------------CAAACTAAACGTGCATCAATGGATGAATGGATAAAC-AAATG TGG---TACATACACACAACAGAGTATTAGTCAGCCTT-AGAAGGAAGGCAGTCCTGTCACGTGCTACAAAATAGATG-- -AA-CTGGAGGACACTGTGCTAAGTGAAATAAACTGGACACAGAAAGAGAAATACTATATGATTTCACTTATATGAAGTA CCTAAAGTGGTCAGATTCATAG--ACAGAAAGCAGAACGGTGGCTGCCAGCAGTGGGCAGAGAGGGA----GAGGGGTTT TTGTTTAGTGGGTACA-GAATTTCAGGTTTGCTAGATG---AAGTTCTGGAGAGCTGTTCCACAACAATGCGAATATACT TAACACTGCTGAACTATGCACTTGAAAGTGGTTAAGATGG-AAATTTCATGTTATGTGGTTTTTACTGCAATTAAATAAA --AATAGAATGAGGCTGAGCAAGGAA---------ATAAAGGCTCCC---CCCTTCCTCAGGAA--------AGCACCCA GGCAACCAACAGCACCCCAGAGACA-CAGGCAGCTCT >Tapirus_indicus TTGTTTAAACATGGTTGACCTCTGTCTGCCTAGTTGTCAGAGA---GGCT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----GTGATG---AAAATGGCTTCC-------------CAAACTAAATGTCCATCAATGGATGAACGGATAAAC-AAATG TGG---TATATACACACAGTGAAGTATTATTCAGCCTT-AGAAGGAAGGAAATCCTGTCACATGCTGCAAAATATATG-- -AACCTTGAGGACATTATGCTAAGTGAAATAAGCTGGACACAAAAAGAAAACTTCTGTGTGATTCCACTTATATGAAGTA CTTAAAGTAGTCAGATTCATAGAAACAGAAAATAGAATGGTGGTTACCAGCTGCAGGCAGCA---------GGGGAGTTT TTGTTTCATGGGTAGA-GAGTTTCAGATTTGCAAGATG-AAAAGTTCTGGAGATCTGTTTCACAACAACGCGAATATACT TAGGACTACCGAACTCTACACTTAAAAATGGTT--GACAGCCAATTTTATGTTATGTGGTTTTGACTACAATAAAAAAAA AAAATGGAATGAGGTTGTGCAAAAAAAAGAAA---CAAAAGGCTCCC---ACCTTCCTCAGGAATGTCCC--AGCACCCA GGCAACCAACAGCGCCCCTGAGATG-CAGGCAGCTCT >Myotis_myotis CTTCTTCAACAGAGTTGGCTTCTGTCTGCCTAGTTGTCAGAGA---GGCT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----GCGATG---AAA-TG-CTTCC-------------CAAACTGAATGTCCATCGATGGAGGAATGGATAAACTAAATG TGC---CATTTACATACAACGGGATATAATGTAGCCTT-AGAAGGAAGGAAATCCTGTTACATGCTAAAACATGGATG-- -AGCCTTGAGGACATTATGCTAAGTGAAAGAAACC--------------------------------------------- -----AGTGTCTGTGT-----------GGGAGTAGGAAGG-------------------------------AGAGAATTT TTGTTTAATGTTTATA-GAATTTCCTATTTGCAACATGAAAAATTTTTGGAGATGTGTTTCGCAACAGTGTGACTATACC TCATATGACTGGACTATATACTTA-AAATAGTTAAGATGGTAAATTTTATGTCATACAATTTT---TACAATTAAAA--- --ACTAAAATGAGGTTGAACCCCCCAA--------AAAATGGTCCCC---ACCTTTCTCAGAAATGTCAC-AAGCACCCA GACAACCAACAGTGCCCCTGAGGCATTACCCAGTTCT >Rhinolophus_ferrumequinum TTTCTTCAACAGAGTTGGCCTCTGCCTGCCTAGTTGTCAGAGA---GGCT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----ATGATA---AAAATGGCTTCC-------------CAAACTAAATGTCCATCAATGTAGGAATGGATAAACAAAATA TGGGACCATATACATACAATGGAATATAATTTAGCCTT-AGAAGGAAGGAAATCCTATTACATGCTACAACATAGATGAA TAACCTTGAGGACGATATGCTAAGTGAAATAAGCC--------------------------------------------- -----AGTGGCTAGGT---------------GTGAGTGGGTGG----------------------------AGAGAATTT TTATTTAATGAATGCAGGAGTTTCAGATTAGCAACATG-AAAAATTCTGGAGATCTGTTTCAAAGCAATGTGAATATACT TAATATTACTGAACTGTACA-TTA-AAATGGTTAAGATGGTAAATTT-ACGTTATGTGGTTTTTACCACAATGAAGA--- --AATGGAATGAGGTTGAGCCAAAAAAAAAAA---AAAATGATTCCC---ACCTTGCTCAGGAGTGTCAC-AAGCACCCA TACAACCAACAG--------AGACA-CAGGAAGCTCT >Canis_familiaris TTTCTTAAACCTAGCTGGCCTCTGCCTCCTTTGTTGTCAGAGG---GACT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----CTAACG---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------AAAATGCCCACC---GCCTTCCTCAGGAACATAAC-AAGCACCCA GGC----------------------------AGCCCT >Felis_catus TTTCTTAAACATAGTTAGCCTCTGCTGGCTT---------------AGTA------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----GTGATG---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------AGAATGGCTCCC---ACCTTCTTCAGGAATGTTAC-AAACACCCA GGCAACCAACAGAGTTCCTGAGATA-CAGGCAGCTCT >Manis_pentadactyla ATTCT--AAAATAGTCGCCCTTTGCCCGCCTCACCGTCAAAGA---GGCT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----GTGATG---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------AAAATGGCTCCC---ATCTTCCTTAGAAATGTGAC-GAGCATCCA GACGAGTTGCAG---CCCCGAGACA-CGGGCGGCTCG >Sus_scrofa TTTCTTAAACATAGCTGGCCTCTGCCTCCCTGACTGTCAGAGA---GGCT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----GTGATG---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------AAAACAGCCCCC---ACCTTCCTCAGGAATGTTAC-AAGCACCCA GGCAACTGACGATGCCCCTGAGA---CCAGCAGCTCT >Tursiops_truncatus TTTCTTAAACGGAGTTGGCCTCTGCCTGCCTCGTTGTCAGGGA---GGCT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----GTGATG---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------AAAAGAGCCCCC---ATCTTCTGGAGGAACGTTAC-AAGCACCCA GGCGATCGGCCGTGCACCCGAGAC--CCAGCAGCCCT >Condylura_cristata TTT-------------GGCCTCTGCCCAGTTGCCTGTCAGAAG---GGTTGTGAGAATATATAACAAATGGAATTCTATT CAACTATTTAAAAAGATGAAATAGTACATTTTGGGATGAAATAGGTGCACCTTGAGGTGATTATACTAAGTGAAATTAGT CACAAAGACAGATATTGATGGTTTTACATATCTGTACAATATAAATAACCAAATATATACATGTATATTTGGTTTTAATA TCTTTTCTTTTAATATGTTGGCAAAGTACAACAACAAAATTAGGCTTAATGAAATATATGCTGGCTGCCAGAAGGGACGG GGGAGGAAGCAGGGGCCGGAGGAAGGCAGGGGCCAGGGCACTGACTGAGGATGCTTGGTAGAGGGTGAGTGACGCCTGTG CACTGATGGAGGAGTCAAAATGTAAACACAAAGTTATATGGACATGTGAATGGCTGACAGAGTGAAGCAAAAAATGCAGG GGTGGTGAGG---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------AAAATGGCTTCC---ACC-CCCTCAGGAATGGTAC-AAGCATCCA GGCAGCCAACA-----------------------CCT >Erinaceus_europaeus TTTCTTTAATAGAAGTGGCCTTTGTTCAGCTACTTGGCAGAGA---AGTT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----GTGAGA---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------AAAATGGCACTT---ACCACCCTCAGGAATGTTTCTTAGTACCCA GGCAGCCAACAG-----------------------CT >Homo_sapiens CTTCTTAAACACAGTTGGCCTCTACCTGCCTGGATGTCAGAAAGGCGGCT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----GTGATG---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------AAAATGGCTTCC---ACCTTCATCAAGGACATAAC-AAGCA-CCA GGCAACCAGCAGTGCCCAAGAGAGA-GAGGCGGCTCT Horse187_LINE >L1_Carn7 -------------------------------------------------------------------------------- ----------ATGGTGACAGATGGTAACTAGACTTATTGTGGTGATCACTTCACA------------------------- -----ATGTATACAAATGT-CGAATCACTATGTTGTACACCTGAAACTAATATAACATTGTATGTCAATTATACTCAAAT AAAAAAA------------------------------------------------------------------------- ---------------- >Equus_caballus CTTATT-AGAACAGACATTGTCCCATCCTCTTT---CTTCTTTGTTATTCCCAACAACTATGAG--TTTTT---ACAAAT GAAGACC------------CATGTTAACTATACTTATGGTGCTGATCATTTCACT------------------------- -------AGATACCTAGTC-TGGATCATTATGTTGTACATCTGTAACTAATTTAATGTTATATGTCAATTACATCTCAAA AACAA---------AAAAATAAGACCC---AGAGAAATG-----ACT---TGCTCAA----------CT--AGTGACTAG TGGTGGAATTACAATT >Ceratotherium_simum TTTATT-AAAACAGACATTGTACCATCCCTTTT---CTTCTTTGCTATTCCCAATAACTATGAGA-CTTTT---ACAAAT GAAGACC------------CTTGTTAAACAGATTTATGGTGGTGATCATCATATATACTTATGGTATATAGATATGATCT GATATCTATATACATATAT-TGGATCATTATGTTGTACACTTGAAACTAATATAATGTTATATGTTAATTATATCTCA-- --------------AAAA-GAAGACCC---AGAGAAGTG-----ACT---TGCCCAAAACTATATTCCT--AGTAACTAT TGATGGAATTACAATT >Myotis_myotis CTTATT----------------------------------------ATTACCAACAACTATGAGA-CTTTT---ACAAAT GAAGACC------------TATGTTAACTAGACTTAATGTGGTGACCATTTCACA------------------------- -------ATATATATGTTTATGGATCAGAATGTTGTATACTTGAAGCTAATATAATGTTATATGTCAATTACATCTCAAT TAAA----------ACAAAT---ACCC---AGAGAAGTG-----ACT---TGCCCAAAGTCATATTCCT--AGTG-TGAG TGCAGGAACCATCACT >Rousettus_aegyptiacus CTCATT-AAAACAGACATTGTACCATCTCCTTT---CTTCTTCATTATTACTAATAGTTACAAAA-CTTTT---ACAAAT TATGACC------------CATGTTAACTAGACTTATTGCAATGGTCATTTCACA------------------------- -----ATATATACATATAT-TGGATCATTATATTGTACATCTAAAGTTAAT---ATGTTATATGTCAGTTATATCTCAAG AAAA----------AAAAAT---GCCT---AGAGAAGTG-----ACT---TTCCCAAAGCCATAGCTCT--AGTAACTGC TGATGGGACTACAATT >Condylura_cristata NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAACTACGAG---TTTT---ACAAAT TAT--CA--------------------------------TGGTGATCATTTTGCA------------------------- -----ATATATACACATGT-CAAATC---ATGTTATTTGCCTCAAACTAAT-----GTCATGTGTCAGTGATACCTCAAC TGCCATCTCCC---CAAAAT---ACCC---AGAGAAATC-----ACT---TACCCCAAGCCATATTTTT--CACAATTAC AGGTACAGCCACAATT >Uropsilus_gracilis TATAAAAAAAACAGACACCGTACAATCCTCTTTA---------------------AGCTCTGAGA-ATTTT---ACA--- --GGTAA-----------------------------TTGTGGTGATCATTTTATA------------------------- -----ATGTATACACACAT-CAA-TCATCATGGTGTATGCATGAAACTAAT--------AGGTGTCAATTACATCTCATT TAAAA---------AAAAAG---ACCC---AACACAGTG-----ACT---TGCTCAAAGTCAGGTTTCT--AATAACCAC TAGTAGAACCACACTT >Canis_familiaris CTTACT-AGAACCCAGACCATACCATTCACTTTCTTCTTCG-GATTATTCCCAACAATGGTGAGA-CTTTT---GCAAAT TAAGACC------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------AGAGGAGTGAAGTAACT---CGCTCAAAGCCTTATTCCT--AGCACTTAG AGGGTGAACCACAATT >Ailuropoda_melanoleuca CTTATT-AGAGCAGAGACAGTGCCATTCACTTTCTTCTTCTTGATTATTCCCAACAACTGTTAAGACTTTT---ATGAAT TAACACC------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------AGAGGAGTGAAGTAACT---AGCCCAAAACCATATACTCCTAGTAACTAG TTGTGGAGCCATAATT >Manis_pentadactyla GTTACT-AAAATAGATATTGCACTGTTCACTTTCTTCTTCTTTAGTATTCCAAACAGCTATGAGA-CATTT---ACAAAT TAGGTCC------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------AGAGAGATGAAGTTACT---TGGCCAAAGCAGTGTTCCG--AGTA----- ---TGGGACCACAATT >Sus_scrofa ATTATT-TAAGCCAATATTATTCCATTCACTTTCTTCTTTATTATTATTCCCCCAAACTATGACA-TTTTT---ACAAAT GAAGACC------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------CATGAAGTT--GTCACT---TGTCCAAAGCCA----------------AG TGTTGGTTCCACAGTT >Bos_taurus CTTATT-AAATCAGATAT------GTTCACTTT---CTTCTTTATTATTCCCAACAACGATAATA-TTTTT---ACAAAT TAAGACT------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------TGGGAAGTGAAATAACT---TGTTCAAATTCATATTTCT--AGTAACTAG TGGTGGAACCACAATT >Cavia_porcellus CTT-TT-AAAGCAGAAAAC-TAAAAGCCACTTTATGCTGCTTTGTTATTCACAACAACCAAGATG-CATTT---ATAAGT TAAAACC------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------AGAAAAATGAGGTATCTATCTTGCTAAAGCTTTTTTCTA--ATGAAGTAG TGAGAGAAGCGTGGTT Horse233_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------TTCAGCCTTA AAAAAGAAGGAAATCCTGCCATTTGTGACAACATGGATGAACCTGGAGGACATTATGCTAAGTGAAATAAGCCAGGCACA GAAAGACAAATACTGCATGATCTCACTTATATGTGGAATCT--------------------------------------- ----------------------------------------- >L1MAB_EC -------------------------------------------------------------------------------- -----------------TTTTTTTTTTTCAGTTTTATTGAGATA-----TAATTGACATATAACATTGTATTATGTTTAA GGTGTACAACATAATGATTTGATATATGTATATATTGTGAAATGATTACCACAATGAAGTTAATTAA------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------- >Canis_familiaris AGAGAATACGATTTCT-TCCATAACATGGAAGAAGA-ATG---TGTACTTGCTTC---CTTCACATGG------------ --------GATTTT------TTTTTAA---------TTGAAACA-----TATTTGACGTGTGACATCCTG-CACATTTAA AGTGTACAACATGTGAACTTGATACATTTATGTACTGTAACGTGATTACCCTCTGGAAGA-------------------- -------AAGCTATCCTACCATTTGTGCAAACGTGGATAGACCTTGAGCATATGATGCTAAGTGAGATAAGTCAGCCAGA AAAAGGCAAGTACTGTGGGA------------------------CCTCAGGTGGGATTTT---GCAGGTGCAAGGGG--- TGTGC-----TGGAGAGAGTGGCTGCTGGGAATGTGATCAG >Felis_catus AGGGAATAGGATTTTAGTCCCTAACATCTAAGAAGT-AGG---TGTACCTGGTTG---CCTCTTGTGGGCAGCACAAGAG CCATATTTGAGCTC------CATTTAA---------TTGAGCCA-----TATTTGATATATAGCATTGCA-TACATTTAA GGTATACAACATGTGGAGTTGATGCATTTATGTATTATAATGTGATTTCCCTGTGGAAGA-------------------- -------AGTCTATCCTGCCGTCTGAGAAAATGCGGATGGACCTTGAGCATAGGATGCTAAGAGAGAGAAGT----CAGA AAAAGACAAGTACTGTGGGAA------------------------------------------GCAGG--------G--- TGTGC-----TGGTGAGACTGGCTGCTGGTAACGTGGTCGC >Manis_javanica AGGGAATAAGATTTCTGCCCCTAACTTGTAACAAT----------TACTTGCCCC---TCTCACATGG------------ --------GGTTCT------TTTTCTA---------TTGAAATG-----TATTGGGCAGAATACGTCGTG-TAAATTTAA ATTGTA---CGTGTTAACCTGATAGATTTACATATTGTCACCTGATCGCTTCTCTGAGAAGAA----------------- -------GGGCCATCCCGACATTTCTGACAGCATGTGTGGACCGTGAGCATATGATGCTAAGTAGGATACAT----CAGC CAAAGAGAAATACTGTAGGC------------------------TCTCACGTGGGATTTT---GCAGATAGGAGGGT--- TGTGA-------------CAGATGGCCAGTAACCTGACCAG >Sus_scrofa AGGGAATAAGACTTTAGCCCTTCACTTGTAAGAATA-AGG---TGTACTTGCCTA---TCTCACAAGG------------ --------AATTTT-------TTTTAAATATACTTTTTGAAATA-----TGCATGATATGTAACATTGCA-TAAATTTAA AGTGTACAGCATGTTAATTTGATACATTTATGTATTATAATATGATTGCTGCTGTGAGAAGGA----------------- -------AGGACATCTTGCAATTTGTGACAACACAGATAGACCTTGAGCGCATTATGCTAAGTGAAATAAGGCAGACAGA TAAAG-CAAGCACTGTATGA------------------------TCTCACATGGGATTTT---GAAGGTAGGGAGAG--- --TGA-----TGGAAAGACTGACT-CTGGTAACCTGATCAG >Bos_taurus AGGGAATAAGATTTTAGCTCCTAAGTTGTAAGGGTAGAGG---CAGGTACACATC---TCTCACAAGG------------ --------GATTTT-------TTAAAAATAAACTTTTTGAAATC-----TACATTATATATAACATTGTG-TAAATTTAA GGTGTACACCAGGCTAGTTTGATACATTTTTGTGTTGTAATATTGCTGCCCTGTGATAGA-------------------- -------AGGACATCCTGC-ATTTGTGATAATATGGGTGGACCTTGAGCGCATTATGCTAAGTGAAATAAGT----CAGA GGAAG-CAAGCAGAGTGTGA------------------------TCTCTGATGGGATTTT---GCAGGCAGGGGGAG--- TGTGA-----TGGAGAGACTGACTGCTGGTCACCTGGTCAG >Equus_caballus AGAGAATAAGATTTTGGCCCCTAACTTGTAAGAAGA-AAG---TGTACTTGCCTC---TCTCACATGG------------ --------GATGTT-------TTAAAA---------ATGAAATA-----TCTTTGACATATAATATTGTG-TAAATTTAA GGTGTACAATATGTTAATTTAACACATTTATATATTGTAGTATGATTGCCACCAGGAGAA-------------------- -------AGGACATCCTGCCATTTGTAACAACTTGGATGGACCTTGAGCACATTGCGCTAAGTGAGATATGTCAGACAGA GAAAGACAAGTACTGTATGA------------------------TCTCACATGGGATTTT---GCAGGTAGGAAGGG--- TGTGG-----TGGAGAGACTGGCTGCTGGTAACCTGATCAG >Ceratotherium_simum AGAGAATAAGATTTTAGCCCCTAACTTGTAAGAAGA-AGG---TATACTTGCCTC---TCTCACATGG------------ --------GATTTT-------TTTTAA---------TTGAAATA-----TATTTGACATAGAACATTGTG-TAAATTCAA GGTATACAATACGTTAATTTAATACATTTATATATTGTAACATGATTGCTGCCATGAGAA-------------------- -------AGGACAT-GTGCCATTTGCGACGACATGGATGGACCTTGAGCACATTGTGCTAAG-GAGAGAAGTCAGACAGA GAAAGACAAGTGCTGTATGA------------------------TCTCACATGGGATTTT---GCAGGTAGAAAGGG--- TGTGA-----TGGAGAGACTGGCTGCTGGTAACCCGATCAG >Condylura_cristata AGGGAGTAGGATGTTCTCCCCTATCTTGCAAGTAAA-AGG---CATCTTTGCCAC---CCTCCCATGG------------ --------GATTTA------TTTTTAA---------TTGAAGTATTTTTTTTTTTACATACAATGTTGTG-TAAAGT-GA GGTGTGGAACATGCTAATTTGATCCACTCACATATCGTAATGTGA---------GAAAGA-------------------- -------TGGACCTCCTGCTGTTTGGGCTGTCAAAGCTTGCCCTTGAGTGCATTAGGCCAAGTGGGAATAAT----CAGA AAGGGACAAGGGCTGTATGA------------------------TGTCATATGGGATTTT---ACAGGCAGGAGGAG--- CGTGC-----AGGAGAGACGGCCTGCTGGGAAACTGGTTAG >Sorex_araneus AGGGAGAAAACTGTTAGTGCCTTGCATGGAAGAAGGCAGTGTCCGCACTCGCC-----TTTCCCATGA------------ --------AATGTT---------TACA---------CTGAAATG-----TGTCTGACCCACTGTGCCATA-CAAATG-AA GGAGTGCAACATGTTCATGGCAT-CACTTATATGTTGTAATACAAATGCCCACAAGAGGGGAGGGAGG------------ -------AGGTCGGCTGGC--TCCTGGGTGGCATGGAGGGTCCT-GAGCACATT-TTCTCACTAAGATTTAT----CAGA CTAAGACAAATCCGGTCTGA------------------------GTTTGCGTGGGATTTT---GCAGGTAGGAAAGG--- --TGA-----AGGAGAGCTGGACCACTGGGAACCCCATCAG >Myotis_myotis AGGGAATAAGATTTCTGCTCCTAACTTGTAAGAAG----G---CACGCCTGCCTC------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TTTCACATGGGATTTT---GCAGGTAGGAGGGGTGA TGTTT--------AGAGTCTGGCTGCTGCTAACCTGATTGG >Rousettus_aegyptiacus AAACGATAAGATATTAGTCCCTAATTTGTAAGAATA-AGG---TGTAATTGCCTC------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TCTCACAAGGAA-TTT---GCAGGTAGGAAGGGCAA TATGGAGATATGGAGAGTCTAGCTGCTGGTAACCTTATCAG >Heterocephalus_glaber GGAGAGTGAGGTGTTAGTTCTCACTTTGCAGGGAACAAGG---TGTGCTTGCGTT------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TCCTATGTGGGA-TTT---GCAAGGCGGTGAGG--- CTTGT-----TGGAGAAACTTGCTCCCAGTAACCTGAGCAG Horse255_LINE >L1MAB_EC -------------------------------------------------------------------------------- -----TTTTTTTTTTTCAGTTTTATTGAGATATAATTGACATATAACATTGTATTATGTTTAAGGTGTACAACATAATGA TTTGATATATGTATATATTGTGAAATGATTA------------------------------------------------- ----------------------------- >Sus_scrofa TTTCTTTTGAATGT---TCTCACCCTTGGCGTTTCTGTCTTCACTGTGGCCTGAGGT---TT----GGGGGCCCTTTC-- ----TAATTTTAATTTAAATTTTGTTGAGGTGTAATGGAC--CTAACATTCTATTG-GTTTCAGGTGTACAGCATAGTGA TTCAATATTTGTGTA-A-----------------CTGGGGGGGCTTCTT---GAAA-AATCAAGCCAACACTCACTTGCA GAAACAGT---TAGCC---TGTTGGACAG >Tursiops_truncatus TTTCTTTTGTATAT---TCTCATCCTTTGCTTTTCTGTCTTCTCTGTGGCCTGTGGT---TT---TGGGGGCCCTCTC-- -------TTTTAATTT---TTTTATTTAGGTATAATTGAC--ATAATGTTATATTG-GCTTCAGGTGTACAGCGTAGTGA TTCAATATTTGTATA-A-----------------TTGGGGG-CCCTCTC---AAAAAAATCAAACCAATACTCACTTGGA GAAGCAGTAAACAACC---TGTTGGACAG >Equus_caballus TTTA-TTTGTGCCTTCTTCTCATCGTTTGCTTTTCTGCTTTCTCTGCAGCCCCTGGT---TTGGGGGGGGGCCCTCTT-- -TTTAAATTTTATTTC---TTTTATTAAGATATAATTGAC----------ATATTA-GTTTCAAGTGTACAACATAATGA TTCAATATTTGTGTA-A-----------------TTGGGAA-CCCTCTT---AAAA-AATCAAACCAACTCTCACTTGAA GAGGCAGT---TAACC---TTTTAGACAT >Ceratotherium_simum TTTC-TTTGTATGTTGTTCTCAGTGTTTGCTTTTCTTCCTTCTCTATGGCCTACGGT---TT----GGGGGCCCCCTT-- -TTTAAATTTTATTTT---TTTTATTAAGGTATAATTGAT----------ATATTA-GTTTCAAGTGTATAGCATAATGA TTCAATATTTATATA-A-----------------TTGGGAA-CCCTCTT---GAAA-AATCAAACCAACACTCACTTGGA GAAGCAAT---TAACC---TGTTAGAGAT >Canis_familiaris TTTC-TTTCTATGT---TCTTATCCTTTGCTTTTCTGCCTTCTCCATGCCCTATGGT---TT----GGGAGCACTCTC-- -------------------------------------------------------------------------------- ----------------------------------------------------AAAA-AATCAAACCAACCCTCCCATGGA GAAGCAAT---TAACC---TGTTAGACAT >Felis_catus TTTC-TTTGTATGTTCCTCTCACCCTTTGCTTTTCTGCCTTCTCTATGCCCTGTGGT---TT----GGGATCTCTCTT-- -------------------------------------------------------------------------------- ----------------------------------------------------AAAA-ACTCAGTCCAACCCTCACATGGA GAAGCAGT---TAACC---TGTTAGGCAT >Manis_pentadactyla TTTC-TTTGTATGTTCTTCTC------TGCTTTTCTGCCTTCTCCATGGCCCATGAT---TT------GGGCCCTCTT-- -------------------------------------------------------------------------------- ----------------------------------------------------AAAAAAAGAAAACCG----TCACTTGGA GAAGCAGT---CAGCC---TCCTGGACAG >Myotis_myotis TATC-TTTGTACATTCTCCTCATCCTTTGCTTTCCTGCCTTCTCTGTGGCCTGTGGT---TT----GGGCATCTTCTT-- -------------------------------------------------------------------------------- ----------------------------------------------------GAAA-AATCAAATCAACAGGCA----GG GAAGCAGT--------------GGGACAT >Rousettus_aegyptiacus TTTC-TTTGTACGT---------CCTTTGCTTTTCTGCCTTCTCCATGATTGGTGGT---TA----GAGTGTCCTCTC-- -------------------------------------------------------------------------------- ----------------------------------------------------GAAA-AATCAAACCAACACTCA----GA GAAGCAAT---TAACT---TGTTGGACAT >Condylura_cristata TTTC-TTTGAATGTTC-CATCATTCCATCTTTCTCTGTC---TCCCTGGTCTGTGAT---TT----AGGTGCTCTCTT-- -------------------------------------------------------------------------------- ----------------------------------------------------GAAA-AATCAAATCAGTACATGCTTGGA AAAACAGT---TAACC---TGTTGAATAT >Sorex_araneus TCTC------ACGTTCTTC-CATCCTTTGTTGACCTGTCTTCTCTGTGCCTTGTGGT---TT----GGATGTCCTCTT-- -------------------------------------------------------------------------------- ----------------------------------------------------AAAA---TCAAACCAACA--CACTCACA GTAGTAGCTGCTGACCTGTTGTTGTACAT >Homo_sapiens TGCC-TTTGTAGGTTCCTTTCATCCTTTGCTTTTGTGCTTCCTATGTGGCCTGTGGT---TT----GGGAACCCTGTT-- -------------------------------------------------------------------------------- ----------------------------------------------------GAAA-AATTAAACCAACACTCACTTGGA GAAGCAAT---TAACC---TGTTTGACAT Horse265_LINE >L1MA9_3END --------------------------------------------------------------------------GGTGGG GGAAATGGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGA-TCTAATGTACAG CATGGTGACTATAGTTAATAATACTGTATTGTATACTT------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------GAAATTTGCTA-AGAG---AGTAGATCTTAAGTGTTCTCACC----ACACACAA-----AAAAATGGTAAC TATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTT GT-ACACCTTAAATATATACAATTTTTATTT-GTCAATTATACCTCAATAAAGCTGGAAAAA------------------ -------------------------------------------------------------------------------- --------- >Canis_familiaris CTGGCCTTTTATTTAAACTAGAAACTAATTTATTCTTAAAAATAGGGATT---AAAGAAA---CACCTAAG--------- ----AAGGGT-GAAAGTGTTCAAAAGGTACAAATAACTAGTTAC--AAAGTAT-TAAAACCTGGGG--TGTAATATATAG CATGGTGGTTATAGT---TAATACTATAATGTATATTT------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------GAAAGTTGCTA-AGAC-------AATCCTAACAGTTACCATC----ACAAGAA------AAAAAATATGTC TATGTGTGGTGATGG--ATACTAACTACACTTGTTGTGATGACCATTTTGCAATATACACACATATTGTATTCTTCTGTT GT-ATACCTGAAAC--AC------CTGAAAT-GTCAATTATATCTCAATTTAAAAATAACAAAA---------AAATC-- -----------TTACCT----AAT---CTTATGAATTT-GCTGCTAGTACTTTCTTT------AAGAATCAT------GA AGCATGGAA >Felis_catus CTAGCATTGTATTTAAAGTGGAAACTAATTTATTCTTAAAAATAGAAAGT---AAAGAAA---CATCTAAG--------- ----ATGGGT-GAAGATGGCCAAAAAGTACACATTTCCAGTTGT--AAAATAT-TAAATTCTGGGGC-CGTAAT-----G CATGGTGATTACAGTTAATAATACTGTAATGTATATTT------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------GAAAGTTGCTA-AGACTGTCATAGGTCCTGACAATGCTCATC----ACAAGAA------AAAAATTATAAT --TGTGTGGTGATGG--ATATTAACTACACTTATTGTGGTGACCGTTTTGCAATACACACACATATAGAATCCTTATGTT GT-ACACTTGACACTAAT------TTTATTT-GTCAATTATATGTCAATTAAA--------------------AAACC-- -----------TTACCT----AAA---TGTATGAATTT-GCTTCTGGTACTTCCTTT------AAGAACCATTAGCACAA AGTATGGAA >Manis_pentadactyla CTAGGATTTCATTTAAACTATAAACTTATTTATACGTAAAAATAGAAATT---CAGAAAA---CACT--AG--------- ----ATGGGT-GCAAGTGGTTAA--------AACTTCCAGGTGT-------AAATAAGTTGGGGGGA-TGTATTGTACAG -ATGGTGACTATAGTTAATAATACTGTAATATATATTT------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------GTAAGTTGCTC-AAAG---AGCAGGTCTTAAAAGTTCTCACCCAAGAAAAGAAAAATATAAAAAATATAAC TATATGTGATGATGG--------ACTAGATTTATTGTAGTGATCATTTTGCAATATATACATATATTGAATCA------T GT-ACATCTGA-GCTAATACAA-GCTTATAT-GTCAATTATTTCTCAATTAAAAACAACAACCAAAAAA----ACCCC-- -----------TCACCT----ATA---TTTATGAGTTT-GCTGCTGGTACTTTTTTT-----TAAGAGTCATTAGCACAA AGCATAGAA >Sus_scrofa CTAGCATTTTATTTAAACTGAAAAC----TTATCCTTAAAAATAGAAATT---TAAAAAA---CACCTAAG--------- ----ATGGGT-GAAGGGAATCAAAA-GTACAAACTTCTAGTTAT--AAAATACATAAATCCTCGGGA-TATAATATACAA CATGGTGACTAT----AATAATACTATAATTTATGTTT------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------GAAAGTT-----AGAG---ATTAGATCTTAAAGGTTCTCATC----ATAAGA-------AAAAATTGTAGC TCTATGTGGTGATGG-------------ATTTATTGTGGTGATCATTTTGCAATATACATATATATCGAATCAT--TGTA GT-ATACCTGAAACTTATATAA-TACTATAT-TTTAATTATATCTCAATTTTTAAAA----------------ATCCC-- -----------CCACTA----AAG---TTTATGATTTT-GTTGCTGGTACTTTCCTT-----TGAGAAATGTT--CATAA GGCCTGAAA >Tursiops_truncatus CTAGCATTTTATTTAAACTGAAAGCTTATTTATTCTTAAAAATAGAAATT---AAAAAGA---CATCTAAG--------- ----ATGGGT-GAAGGTCATCAAAT-GTACAAAGTTCTAGTTAT--AAAATAAATAAGTCCAGGGGA-TGTAATGTACAA CATGGCAACTATAGTTAATAGTACTGTAATGTATATTT------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------AAAAGTTGCTA-AGAG---ATTAGATCTTAAATAT-CTCATC----ATAAGAA------AAAAACTGTAAC TGTGTGTGGTGATGG--ATGTTAACTGAACTTACTGTGGTGATCATTTTGCAGTATACACATATATCGAATCA---TGTT GT-ACACCTGAAAGTAATATAA-TATTATAT-GTCAATTATATCTCAATTAAAATAAACAGATATTAACT---ATATC-- -----------TCAATTTTAAAAG---TTTATGAATTT-GCTGCTGGTACTTTCCTT-----TAAGAACCATTAGCACAA AGCATGGAA >Equus_caballus CTAGTATTTTATTTAAACTGGAAACTTATTTATCCTTAAAAATAGAAATT---AAAAAAA---CATGTAAG--------- ----ATATGT-GAAGGTGGTCAAAAGGTACCAACTTCCAGTTAT--AAAATAAATAAGTCATGGGAA-TGTAACGTACAG CATGGTCACTATAGTTAACAATACTGTATTGTATATTT------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------GAAAGTTGCTA-AGAG---AGTAGATCTTGAAAGTTCTCATC----ATAAGAA------AAAAATTGTAAC TATATGTGGTGCTGC--ATGTTAACTTGACTTATTGTGGTGATCATTTTGCAATATATACATATGTCGAATAATTATGAT GT-ACACCTGAAACGAATGTAA-TGCCATAT-GTCAATTACATCTCCATTGGAAAAAAAAAAAACAAG-----AAAAC-- -----------TCACCT----AAA---TGTATGAATTT-GCTGCTCGTACTTTCCTT-----TAAGAACCATTAGCACAA AGCGTGGAA >Ceratotherium_simum CTGGCATTTTATTTAAACTGGAAAGTTATTTATCCTCAAAAATAGAAACT---AAAAAAA---CACCTAAG--------- ----ATGGGT-GAAGGTGGTCGAAAAGTACCAACTTCCAGTTAT--AAAGTAAATAAGTCCTGGGGA-TGTAACGTACAG CATGGTCACTATAGTTAATAATATTGTATTGTATATTT------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------GAAAGTTGTTA-AGAG---AGTAGATCTTGAAAGTTCTCACC----ATAAGAA------AAAAATTGTAAC TATGTGTGGTGATGG--ATGTTAACTAGAGTTATTCTGCT---CATTTTGCAATATATACATATGTTGAATAATTATATT GT-ACACCTGAAACTAATATAA-TGTTATAT-GTCAATTATATCTCAATTG---AAAAAATAATCAAG-----AAAAT-- -----------TCACCT----AAG---TATATGAATTT-GCTGCCTGTACTTTCTTT-----TAAGAACCATTAGCACAA AGCGTGGAA >Condylura_cristata CTAGCG-TTTATTTATACGATAAGCTTAAGTGTCCTTACAAATAGAAATT---TAAAGAA---AACCTAAA--------- ----ATGGGT-GATGGTGGGCTAAAGGTACA------------------------------------------------- ------------------------TGTGAAGTATATTTGAAAGTTACT--ATAATGACGACAAAATGGTACTTTCCAGAG AAGGGGTTGAAGGTGGAGGGGGCCAGTTGGATAGAGGCTG---ATGGTAACTATACTTTTGGTGGCCGGAGTGGTGTGGT AAATACATGTCTCAAGGTGTGAAGCTGTATTCCTGAAACACATATAATGTCGTAAAATGTTGCTATCTGCACAACAAGT- -----AAATAAATAAGCTTACTAGCAGTTACATGAAGGAAAAAAAAATTGCTGTTCTCCTTGCATTATCCTTATGCTGAT GTTGTGTATTTTGTGGGGGAAGGGCAAGGAAGTGCCCATCCATTTTAATGGATGGATTAATGGTTAATGTGGAGAAAAGT TAAAAAATAAAATGTTGCTATTGAG---AATAGCCATTAAAATGTTTCACC----TCAAGAA------AAATATTGTAGT TATATGTGGTGGTAG--AGATTAACTAGATG---TGTGGTGATTATTTCTAAATA-ATGCA-GTGTCAAACAA------- -----------------------------------AATCATCTCTCAATTTATA-------------------AAAGC-- -----------CCACCA----AAG---TTTATGAATTA-----CTGGTACTTTTTTTTTTCCTGAGAACAATTAGCACCA AGTGTAGAA >Sorex_araneus CTAGGATTTTATTTAAATT-GGAACTTATTTATCCTTAAAAATAGAAATA---AAAAAAAACCCACCTGAG--------- ----ATGGAT-GAA---------AAGGCACAAACTTCAA-CTGT--AAAATAAAGAAGTCCTGAGGATTATATTGACTAG GATGGAGATGATAGTTATTAATACTGTAATGGATATTTAAAAGTTGCCTGATAATAAC----AAATTCTGGTCTCCATAG GGGAAGGATAGGGAGGGAGGGAGGGAGAGAATAGATAATAGGTATGTTAATTTTACTTTTGGTGATGAGAGTGGCATGGT ACATACAT-TATACAAGTGTGAATTTATATTCCGGAAACTTATATAGTCCTGGAAACCAATGGTACCTCAATAGAAAACA AAGCAAAATAAATAA--CAACTAACAGTTATATGAAACAAACAAAAA----TGATCACTATGAATTATCCCTATATTAAT GTTGAGTCTAATGAGGGATGTGATTAAGATAGCTCACATCCCATTT-----GTGGAT--ATGGTTTAT----AAAAAGAT TAAGTAAATAAAAGTTGCTA-TGAG---AGTAGACATTAAAAGTTCTCACC----ACAAGGA------AAAAATCATGAC TATTT----CAATGGATGTATTAATTAGACTTATGGTAGTGATTATTTTTCAGTATATCTATATATTAAACCATTATGCT GTAATGCCTAAAATGAATAGAA-TGCTATATGGTCAATTGCATC--AGTAAAA--------------------AAAAA-- ------------CCCCT----AAA---TTTATGAATTT-CCTTCCGGAAATTTCCTT----TTAAGAATCATTAGCAAAA GGCACAGAA >Myotis_myotis CTA--------------TTAGAAAGTTATTTATCCTTAAAAA-AGAAATT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------AAAAA-- ------------CACCC----AAG---TTTATGAATTTCGCTGCTGGTGTTTTCCTT----CTAAGAACCACTAGCACAA AGCATAGAA >Rousettus_aegyptiacus CTAGCATTTTATTTAACCTAGAAACTTATTTATCCTTAAAAA-AGAAATT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------AAAGAAA AATTTTTTTTTAAACCC----AAA---TTTATGAATTT-GCTGCTGGTATTTTCCCT----CTAAGAACCACCAACACAA AGCAGAGAA >Homo_sapiens CTAGCATTTTATTTATGCTAGAAACTTATTTAGCCTCAACAATACAAATT------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------CAAAA-- -----------TCACCT----AAA---TTTATGAATTT-GCTCCTGGCACTTTCCTT----CTGAGAACCATTAATCCAA ATCAGGGAA Horse273_LINE >L1MA9_3END -------------------------------------------------------------------------------- -GGGGGGTGGGGGAAATGGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGATC TAATGTACAGCATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTT CTCACCACACACAAAAAAATGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAAT GTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTG GAAAAA-------------------------------------------------------------------------- -- >Canis_familiaris TTGAAACAGTATGCAATTTCCTGCCAGCAGCATATAAATTATCC------ACTTCAAGC---AAAAGCAAACACGGCA-- -----------GGAATAAGATTGATGTTGTTT-AA-GGTACAAACTTGCA---ACGAGCAGCAAACAAGTGAGAGGGCTC ----ACGCAGTGGGATGAATCCAGACAACGATGTTGAGCTACAATCATCAAACTTGCTAAGATATTAAGACCGAACCATC CCCAAGGC-TGGGAAG--------------------GACCGAAGTGCT----ACCTCTACGACAGC---------ACCAT ATGCCCACGTACCAAATTAATACA-CGCACGCCTTAAATGTCCACAA-CGGTAAATGTCAAATG-TATTCAATAAAAAAG AAA------ACGTGTGCGTGCG----GCC---CACATGTTCTGACTTTTAC-TTGGTGAAGTAAAT-CA-----ACGACC GT >Felis_catus CTAAAATAGCCTGAATATTCCTGCCAGTGGCATATAAACTCTCCACCCTCATTTTAAGC---AAA--------------- ------------GGGGAAGGCCGCTGTTGATT-CAGGGCACAAACCTGCC---GGGGGCAAGACACCGGCC--AGAGATC TA--ATGCCGTGTGACGCACGCAG--------------------TCCTCGAACCTGCTGAGTCACTAAGATCTAAGCA-- CCCAACAC-TGAAAAGAAAGGGTAAGTATGTACTGTGATGGAAGCACTCAACACCAGGACGGTGTTCATGGC--CGCAGC ATATAAATGTGCCAAACTAACA--------------------CACAG-TGTTGTAGGTCAACTA-CATTCAACAGAAAAG GAAA-----AAAGGTAAATTTG----GCC---AACGCATGACGATTCCCAC-TTTGACCAGTAAGTCCAGTT--ACAA-C GT >Manis_javanica CTGAACTAGT------------------CACATATAAATTTTGATTTCTCATTTTAAGT---AAAAGTGAACATGGCA-- -----------GAGATAAAATGGATGTAGTTT-AA-GGTACAAACTTGGA---ACAAGT-GTGAATAAGCCACAGAGCCC CAGAGCACGGCATAATGAATACAGA---CACTGTTGTACAACAGTCATCAAACTTGCTAAGAGGCTAACACTGAATTATC CCAACCAC-TGA---------------------TGTGACAGAGATGTTAAACATCACTA-AACAGCAATTGTTTTACAAC ATATAAATGTATGAAATTAACACATCATATGCCTTAAATTGAC---A-TATTATATATCAAATA-TATTCAATAAAAAAA GAGA-----AAAAGGAAATACATTCTGCA---AATATATTCTGACTTCTGC-TCTAAGTAGTAAATGCA-TT--ATAC-T GC >Equus_caballus TTAAATTAGTTTGAATTTTTCTGCCTGTCGCATATAAACTATCCATTCTCATTTTAAGC---AAAAGTAAACATGGCA-- -----------GGGATAAGATTGATGCTATTT-AAGGGTAGAAACTTGCA---ATGAGGAGTAAACAAGCCACAGAAGTC TA--AGGCAGTAGAATGAATACAGACAGCAGTGCTGTACTACAATCACCAAACTTGCTAAGAGACTAAAACCTAACTATC CCAACCAC-TAAGAAGAAAGGATAATTACACAGTGTGACAGACGTGATAAATATCGCTACAATGGCAATCACATTACAAT ATACGAACGTGCCAAATTAACA---CGTACACCTTAAATTTACACAA-TATTGTAAGTCACAGACTATTCAATAAAAAAG AAG------AACAGCAAATATG----GCA---AATATATTCTGACTTCTAC-TTTACGTAGTAAATCCAATT--ATAA-T AT >Ceratotherium_simum TTAAACTAGTTTGAATTTTTCTGCCAGTCGCAGACAAATTATCCAATCTCATTTTAAGC---AAAAGTAAACATGACA-- -----------GGGATAAGATTGATGTTGTTT-AAGGGTACAAACTTGCA---ACGAGCAGTAAATAAGCCATAGAGGTC TAAAGTACAGTATAATGAACACAGACAGCAATATTGTCCTACAATCATCAAACTTGTTAAGAAACTAAAACTTAACTATC CCAATCAC-TAAAAAGAAAGTATAATTATGCAGTGCACTAGAGGTGCTAAATATCGCTACAATGGCAATCCCATTACAAT ATGCAAATGTATCAAATTAACA---AGTACACCTTAAGTTTACACAA-TATTGTATGTCAAATA-TATTCAATTAAAAAG AAA------AACAGTAAATATG----GCA---AATATATTCTGACTTCTAG-TTTAAGTAGTAAACCCAATC--ATAA-T AT >Sus_scrofa TTAAACTAGTCTGAATTTTTCTACCAGGCACATAGAAATTATCCATTCTAATTTTAAGC--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------CAAAGTAAATATG----GCA---AATATATTTCAATTTCTAC-TCTCCCTAGTAAATCCCACT--GTCA-T GT >Bos_taurus TTACTCTAGTTTGAAATTTTCTACCAGTCACATATAAATCATCCACTTTAATTTTAAGC--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------AAAAGTAAACATG----GCA---AATACATTCTGCTTTCTAT-GATGGGTAATAAATCCAATT--ATAA-C GT >Myotis_myotis TTAAACTAGTTTGAATTTTTCTACCAGTCACATATAAGCCATCCATTCTCATTTTAAAC--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------AAAAGTAAACATG----ACA---AATATATTCCGACTTCTGC-TTTAAGTAGCAAATCCAATT--ATAA-T GT >Rousettus_aegyptiacus TTTAACTAGTTTCAATTTTTCTACTGGCCACATATAAACAACCCGTCCTCATTTTAAGC--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------AAAAGCAAATATG----GCA---AATACATTCCAACTTCTAC-CTTGAGAAGTAAATCCAGTT--CTAG-G AT >Condylura_cristata TTAAGGTGGCTTGAATTTTTTC-----------ATAAATCACTCATTCCCATTTTAAAT--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------GAAAGTAAATACA----GCA---AATATATTCTGACTTCTG----TAGGCAGTAAACCCAATTATCTAC-T GT >Sorex_araneus TAAAATTAATCTGAATTTTTTTACCAATC------AAATTAT-CAATCTAATTTTAAGC--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------AAAAGTAAATATA----ACA---AATATATCCTGACTTCTAC-TTCAAGCAGTAAATCCAATT--ACAA-T GT >Homo_sapiens TTAAACTAATTTGAATTTTTCCACCAGTTGCAAATAAATTATCCATTCTCATTTTAAGC--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------AAAAGTGAATACA----GCA---AATATATTTTGAATTGTACTTTTAAGTAGTAAATCCAATC--ATA--T GC Horse275_LINE >L1MA9_3END -------------------------------------------------------------------------------- --------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTT TGATATACGTATACATTGTGA---------AATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTT ACCATT------------------TTTTTGTGTGTGGTGAGAACACTTAAGATCT---ACTCTCTTAGCAAATTTCA--- -------------------AGTATACAATACAGTATTATTAACTATAGTCACCATGCTGTACATTAGATCTCCAGAACTT ATTCATCCTGCATAACTGAAACTTTGTACC-CTTTGACCAACATCTCCCCATTT------------CCCCCACCCCCCAG CCCCTG----GCAACCACCATTCTACTCTCTGCTTCTATGAGTTTGACTTTTTTAGATTCCACATATAAGTGAGATCATG CAGTATTTGTCTTT------------------------------------------------------------------ -------------------------- >Canis_familiaris TGACTTCAGAGGAAGATAG--AAGTTATACATCCTCCACCCAGAAGC-AAAAGGTGGA-----TATTCTGGAGAAATTTT TGCCT------TTCCATTTTTGTTGAGAAAGACCTGAC-ATATGTCACTGGATAAGATTAAGGTGTACAATATGATGGTT TGATTCATATATA-ATTGGGA---------ACTGATAACCGCAATAGGTTTAGTCAAC--ATCCATCATATCATGGAGAT ATAATAAAGAGAAAAAA--------TTCTATTTGTGATCGGAACTCTTAGGGTCTACTACTCTGTTAATAACTTTTCTGT GTGTCATACAATAAGTTTGTATATGTCATACAGAAGTGTTAACCATAGTTATCTTGTTGTACATTCCACTCCCTGTACTT ATTTATCTT--ACAACCATGAGTTTGTACC-TTTTGTTCATC-TTCCTTCAATT------------ACCTGTCTCTCCA- CCTCTGGTAAGTAACCACAACGCTGACCTCTTTTTGTCTGAGTTTGGTGTGGGTTGTTTTGTTT---------------- -----------------TATATTGAAGAACT-TTTTTT---ACTGACACTCACAGAAATGTGGAAAGAAGCAAACTATAA GAGGAAGGGGAAGATTAT-----TTG >Felis_catus TGATTTCAGAGGAAGATGT--AAGTTATAACTCCTCCAACCAGAAGC-AAAATGCTGA---CTTTTTTTGAAGAACTTTT TCTCT-------TCCAGTTTTATTGAGAAATAATTGACTATATAACATTGTGCAAGTTTAAGG------------TGATT TGATTTACCTAT--ATT-TGATTTACAATCAATGATGGCCGCAATAAGTTTAGTTAAC--ATCTGTCATCTTGTGTAGAT ATAAATAAAAAGAAAAA--------TTCTACTTGCGATGAGAATTCTTAGGGTCT---ACTCTGTTAACTACTTTTC--- -------------------TATATGTGATACAGAAGTGTTAACTATAGTTGTCATGTTGTATATTATATCCCTAGTACTC ATTTATCTT--AAAACTGGAAGTTTGTACC-TTTTGACCATC-TTCCTCCAGTTATCCTTCCTTCCACCCTACCCTCCA- CCTCTG----GTAACCAAAAATCTGATCTCTTTCTCTATGAGTTAACTGTAGGTTGTTTTGTTTTG-----------TTT -----------------TATATTGAAGAAC--TTTTTT---ACTGACACTCACAGAAATGTGGAAAAG----------AA GAGGAAGAGGAAGATTATAC-TTTTA >Manis_pentadactyla TGACTTTGGGAGAAGATGG--AAGTGATACCTCCTCTAACCAGAAGC-AAAATGCTGA-----TATTTTGAAGAACAATT TTTTT-------T-CAG-TTTATCAAGAAACAATTGAC-ATAGATTACCACCTAAGTTTAAGGCGTCCAACATGATGGTT TGATTTACGCAT--ATTGTGA---------AATGATTACTGCAAT---TTTAGTTGAC--ATCTATCATCTCATGTAGAA ACAATAAAAAGAGAGAAAAAGAAATCTCCCT-----GTGAGAAATCTTAGGATCT---ACTCTTTTAACAACTTTCC--- -------------------CATACATCATACAGCAGTGTTAGCTAGCCTCATCATGTCCTAAATCATTTCG-GGGTACTT ATTTATCTT--ATAACTGGAAGTTTCTACCTTTTTGACCAAC-TTCCTCAGTAT------------CCTCCACCATCTA- CCCTTG----GTAACCACAGATATAGTCTCT-TTTCTATGAATCTGGTGTTTGTTTGTTTGTT----------------- -----------------TTTGATGAAGAAC--TTTTTT---ACTGA----CACAGAAATGTGGAAAGAAGCAAACTGCAA GAGGAAGAGGAAGAGTATATTTTTTA >Equus_caballus TGACTTCAGAGGAAGACGT--AAGTTATACCTCCTCTAACCAGAAGC-AAAATGCTGA-----TATTTTGAAGAACTTTT TTTCC--------CCA-TTTTATTGAGAAATAATTGGC-ATATGTCACTATATCAGTTTA---TAACCAGCACGATGGTT TGATTTACATAT--TTTGTGA---------AATGATTACCACAATAGGTTTGGTTGAC--ATTAGTCATCTCATACAGAG ATAATAAAAAAAAAAGAGAAAAAATTTCTCTTTGTGATGAGAAGTCTTAGGATTC---ACTCTCTTAAC---TTTCC--- -------------------TACATATCCTACAGCAGTGTCAAGTATAGTCATCATGTTGTACATTACTTCGCTAGTACTT ACTTATCTT--ATAACTGGAAGTTTGTACC-TTTTGACCACC-TCCCTCCATTTCTACTT------TCCCCACCCTCAA- -----------------CAAATCTGATCTCTTTTTGTATGAGTTTG--GTGGGGTTTTTTGTTTGT------TTGTTTTT -----------------CACATCAAAGAAT--GTTTTT---ACTGACACTCAGAGAAATGTGGGAAGTAGCAAAATCCAA GAGGAAGAGGAAGATTATACTTTTTA >Ceratotherium_simum TGACTGCAGAGGAAGATGTTAAAGTTATATCTTCTCTAACCAGAAGC-AAAATGCTGA-----TATCTTGAAGAACTTTT TTTTT--------CCAGTTTTATTGAGAAATAATTGCC-ATGCATCACTGTATCAGTTTAAGCTGTACAGCATGATGGCG TGATTTACATAT--TTTGTGA---------AATGATTACCAAAATAGGTTTAGTTGAC--GTCCATCATCTCATATAGAT ATGACAAAAAGAAAAGA-AAAAAATTACTCCTTGTGATGAGAAGTCTTAGGATTT---ACTCTCTTAACGCCTTTCC--- -------------------TATATATCCTATAGCAGTGTTAAGTATAGT---CATGTTGTACATTACTTCTCCAGTACTT GTTTATCTT--ACAACT---------CACC-TTTTGACCATC--TTCTCCAATTCCACCT------TCCCCATCCCCTG- CCTCTG----GTAACAGCAAATCTGATCTCTTTTTCTATGAGCTTG--GTGGGTTTTTTTGTTGGTTTTGTTTGGATTTT -----------------TAGATTGAAGAACTTTTTTTT---ACTGATACTCACAGATATGTGGAAAGAAGCAAACTGCAA GAGGAAGAGGA-GATTATACTTTTTA >Sus_scrofa TGATTTCAGAAGAAGATGT--ACATTATATTTCCTTTAACCAGAAGC-AACATGTTGA-----CATTTTGAAGAGCT--T ATTTT--------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------ACTGACACTCACAGAAATGTGGAAAGAAACAAACTGCAA GAGGAAAAGGAAAATTATAGTTTTTA >Tursiops_truncatus TGATTCCAGAGGAAGATGT--AAGTTATACCTCCTCTAACCAGAAGC-AACATGTTGA-----TATTTTGAAGAACT--- TTTTT--------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------ACTGACACTCACAGAAACGTG-AAAGAAGCAAACTTCAA GAGGAAGAGGAAGATTATACTTTTTT >Miniopterus_natalensis TGACT-CAGAGGAAGATGT--AAGTTATACCTCTTCTAACCAGATGC-AAAATGTTGA-----TATTTTGAAGAAAT--- -TTTT--------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------ACTGACAC----AGAACTGTGTAAA-------------- ----------------ATCCTTTTTT >Rousettus_aegyptiacus TGGCTTCAGAGGAAAATGT--AAGTTATATCTCTTCTAACCAGATGT-AAAATGCTGA-----TATTTCGAAGAACT--- -TTTT--------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------ACTAACAC----AGAAATGTGGAAAGANNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNN >Condylura_cristata TGAGGTCATAAGAAGGTAA--AAGTTAAATCTCTCCTAACCAAAAGCAAAAATGCTGA-----TATTT-AAAGATATT-- GTTTA--------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------ACTGATTC----AGAAATGTGGAAAG---CAAATTGTAA GAGGAAGAGGGAGATTATGCTTTCTA >Sorex_araneus TGA----------AGATAT----TTTAAGTCTCCTCCAACCTCAAGC-AAAATTCTGA-----TATTTTGAAGATTT--- TTTTT--------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------ACT-ATACCCATAGTAATATGGTAAAAAA-AAAATGTAA GAGGAAGAGTA-AATTATTCTTTTTT >Homo_sapiens TGACTTAAGTGGAAGATAT--AGGTTACACCTCCTCTAACTAGAAGC-AAAATGCAAA-----TATTTTGAAGATTTTTT TTTTT--------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------TCTGACGC----AGAAGTGTGGAAATAAGCAAATTGCAA AAGAAAGAGGAACATTATAC---TTA Horse276_LINE >L1MAB_EC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------TTTTTTTTTTTCAG-T TTTATTGAGATATAATTGACATATAACATTGTATTATGTTTAAGGTGTACAACATAATGATTTGATATATGTATATATTG T--------------------GAAATGATTACCACAATGAAGTTAATTAACACATCCATCACCTCACATAGTTACAAATT TTTTTTTTGTTTKTGTGA-------------------------------------------------------------- ----------------- >Canis_familiaris AAGTGAGGTACTTTAGTT-ATTCA-----------------------TT-ATTTTGAATCCCAGGAACCTAATTATGG-- TAT------------TAAGAA---CATGATTATTAAGTTTTTA--------------------------------AATAT ATTTTATAAAACTTAAGATATCCAGATTATTGTCATTTCAACATGTACT-AGTATAAA-----AAAAATTACTATCAT-T TTTATTGA-ATATGATTTACACATAGCAT---ATTA-GTTTCAGGTGTACAGCATAATGATTCAATATTTACATATATTA CAAAATGATCAACAAAATAAAAAAATGATCACCAGAAAAAATCTAGTTAAGTCCATCAACCTCATACATACTTACAAAAT TGTATGAC-------------CATGATCACTAATTTTGCA---AA--TAAAAATAAAATGTAAGCATTACTTCAAGGAAC TTGATATCCTTCGCTTT >Lynx_canadensis AAGAGAAACATTTTAGTT-ATTCA-----------------------TT-GTTTTGAATC-CCTGAACCTAAATAGTAGA TAC------------TAATAA---CATGATTATTAA-TCCTAAA---TATATATATATATATATATATATATATATATAT ATCTTATTTAACTTAACAGATCCCAATCATTGTCATGGCCACATATAATGAGTATAA------AGCAAGTATTAATCT-T TTTGTGGAGGTATGAATGATGCATAGCAT---ATTA-GTTGCAGGGGTACAGCATAATGATTCAATAATTGTATACATTG C--------------------AAAGTGATCACCATGATAAGTCTAGTTAGCAT--CCACCAACATCCATAGTTACAAAAT TTGGTAAC-------------CATGACCGTTGATTTTGCA---AA--TAAAAATAACATGTACGCATTTCTCCAGGGAAC TTGATACCCTTCACTGT >Equus_caballus AAGTGTCACATCTTAATATCTTGAATATTAAGAATATTTGAATCTTCTT-ATGTTGAATATCCTGAATCTAATTACAAGG TAT------------TAATAA---C---ATTAATAA-TTTTTA-----------------------------------AC ATTTTATTTAGCTCAACATATCCAAATTATT---ATTCCAACATGTAATCAGTATAAAATAATAATAATTATTATTACAT TTTACTGAGGTATAACTGACACATAACATTATATTA-GCTTTAGGTGTACAACATAATGATAAAATATTTGTAT--ATTA C--------------------AAAATGATCACCATAACAAGTCTGGTTAACAT--CCGTCACCAAACATAGTTATGAAAT TTTATAAC-------------CAGGATTATTAATTTTACG---CT--TAGAAACACAATGCAAGAACTTCTTAAGGGAAC TTGATATTCTTTACTTT >Ceratotherium_simum AAGTGATACATCTTAGTT-ATTCA-----------------------TT-GTTTTGAATAGACTGAATCTAATTACAAGG TAT------------TAATAA---CATGATCATTAA-TTTTTA---------------------------------ATAT ATTTCATTTAGCTCAACATATCCAAATTGTT---ATTTCAACATGTAATCAGTATAAAAT---AGTAATTATTATTATAT TTTATTGAGGTATAATTGACACATAACATTACATCA-GTTTCAGGTGTACAAAATAATGATTAAATATTTGTATACAATG C--------------------AAAATGATCACCACAATAACTCTACTTAACAC--CCATCACCATATGTAGTTACAAAAT TTTGTAAC-------------CATGATTATTAATTTTACA---CA--TAAAAATAAAATGTACCAACTTCTTAAGGGAAC TTGATATTCTTTACTTT >Sus_scrofa AAATGACACATTTTAGTT-ATTCA-----------------------CT-ATGTTGAATAGCCTGAATCTAATTATAGGG TAT------------TAATAT----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------CATGATTATTCA-TTTAAA---AA--TAAAAATAAAAAATTAGAATTTCTTAAGGAAAC --GATATTCTTCACTTT >Bos_taurus AAATGACAAACCTTAGTTAATTCA-----------------------TTAATGTTGAATACCCTGAATCTAATTATAGAG TAT------------TAATAT----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------TACAATTATTAG-ATTTAA---AAA-TAAAAATAAAAC---AGAATTTCTTTAAGGGAC TTGATATTTTTAATTTT >Myotis_myotis AAGTGACACATTTTAGTT-ATTCA-----------------------TT-TTTCGGAGTAGCCTGAATAAAATTGTAGGG TAT------------TAATAT----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------CATAATTTTTAA-TTAAAA---AAAATAAAACCAAAA-ATCAGAATT--TAAAGGGAAC TTAATATTCTTCACCTT >Pteropus_vampyrus AAGTGATACATCTTAGTT-ACTCA-----------------------TT-ATCTGGAGTAGCCCGAATCTAATTTTAGGG TGC------------TAATAT----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------AGTAATTTTTTCACTTTAA---GAA-TAAAGACGAAATATTAGAATTCCTTAAGGGAAC TTTATAATCTTCGCGTT >Condylura_cristata AAGTGACACATTTTCATT-ACTTG-----------------------TT-ATTTTGAGAAGTCTGAATGTAATTATAGGG TAT------------TAATA------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------GATGATTA---A-TTTTGA---GA--TAAAAGTAA-ATGTTAGAATCCCTTTAGGAAAC TTACTATTTACCACTTG >Erinaceus_europaeus ATGTAAC------------ATACA-----------------------TT-ATTTTGAAAA--TGTGACATGGCTACAGGG TATATGATATAAAAATAATAT----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------CATGATTATTAA-TTTTAA---AA--TAAAAATAATGTAGTGGAGTTACTTAAGGGAAT TTGATATTTATTTATTT >Homo_sapiens AAAAGATACATCTTAGTT-ACTCA-----------------------TT-ATTTTGAATTACCTGAACCTAATTATATGG TAT------------TCATAT----------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------AATGATTATTAT-TTTTGA---AAA-GAAAAA----GCATTAACATTT-TTAAGGGGGC TCAATATTTTTCA-TTT Horse278_LINE >L1MAB_EC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------TTTTTTTTTTTCA------------------------GTTTT------ATTGAGATATAATTGACATA TAACATTGTATTATGTTTAAGGTGTACAACATAATGATTTGATATATGT----ATATATTGTGAAATGATTACCACAATG AAGTTAATTAACACATCCATCACCTCACATAGTTAC--AAATTTTTTTTTTGTTTKTGTGATGAGAACTTTTAAGATCTA CTCTCTTAGCAACTTTCAAATATACAATACAGTATTATTAACTATAGTCACCA-----TGCTGTACAT----TACATCCC CAGAACTTATTCATCTTATAACTGAAAGTTTGTACCCTTTGACCAACCTCTCCCTATTTCCCC----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------ >Sus_scrofa TTTGTAATAAGAAAAATTTGG-AAAAGGTACTGAGTATCATT---TGAGTAACTAACACTTAGCACTTTTCATATTCTAG GGACTTTTCTTACTTTTCTTTGTGCTTTATTCCTGCCATCCTCCC-ACAGTGC--TATG---AGGTAGAA---GCTTTTT TTTTTCCTCTTTCTCTTTTTTACTATGCATGGGCAGCCATTCTG---GCCTTTTTAAAAAATTGAGATATAATTGACATA CAATATTATATTC-GTTCCAGATGGACAAGATCATGATTCTATATATAT----ATA------GAAGTGATCACCACAG-- ------------------------------AGTTACAAAAA-------------CTTAGGATGAGAACTTTTAAGATCTA CTTTCTT---TTCCTTCAGATACGCAATACAG--TTA-TAATGCTAGTCACCG-----TGCTGTACAC----TTCATTCC TAAGATTTAT-TGTCTCCTAACTGGGAGTTTGTACCTTTCGACCACCTCC----------------AGGTAGAT---GGA GTTA-CTGTACCTATTTT-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------ACAGATGAGAGA----------------- --ACTGAGACCCAGAGAGGTTAAGTGACCTCTAGAG >Tursiops_truncatus TTTGTAGTAAGAAATGTTTTT-AAAAGATACTGAGTATAATTATAATAGTAACTAACACATAGCACTTGTTATGTACTCG GAACTTTTCGT---------TGTGTTTTATTCCTGTCATCCTCCCAACAGCCC--TATG---AGGTAGAT-------GTG GTGTTTTGTGGGTTTTTTTCCACTATGTGCAGGCAACCATTCAGTGTGTGTTTTTTTTAAATTGAGGTGT----GACATA TAACATTA------GTTTCAGGTGTACAAAATAATGATTTTATTTATTTTTTCATTCATTTTGAAATGACCACCACAGTA AGCCTAGTTA--ACATTCATCACCACAC--AGTTACGAAAAAATTTTT----TTCTTATGATGAGAACTTCTAAGATCTA CTCTTTT-----CTTTCAAATATACAATACAG--TTATTAACTGTAGTCACCA-----TGCTGTAAATTACATACATCCC CAGGACTTATTTCTCTCCTGACTGGAAGTTTGTACCTTTTGATCACCTTC----------------AGGTAGAC---ACA GTTA-TTATCCCTATTTT-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------ACAGATGAGAAAACTGGAACACAGAGAGG TTACTGGAACACAGAGAGGTTAAGTGACCTGTCTAG >Equus_caballus TTTGCAATAACAAATGTTTTTAAAAAGATACAGAGTATAATTATAATAGTAATA---ACACAGAACTTACCATGTGCTGG AGACTTTTCTTACTTTTCTATGTGTTTTATTCATTTCATCCTCCTAAGGATGAGGTATG---AGGTAGAT---------- --------AAATTTTTTTTTTCCTATGTGAAGGCAACAGT--------CCTTTTTT----ATTGAGATATAATCAACATA GAATATTATATTA-GTTTCAGGCATACAGCATAATGATTTAACTT-TGT----ATGTATTGCAGAATGATTACCACACTA AGTCTAGTTA--ACATCTGTCACCACAC--AGTTAC--AAACTTTTT-----TTCTTGTGATGAGAACTTTTAAGATCTT CTCTCTTAGCAACTTCCAAATATACAAGACAGTATTGTTCACTATAGTCACCT-----TGCTCTATGT----GACGTCCC CAGGACTTATGTATCTAATAACTGGAAGTTTGTATCTTTTGACCTCCTTC----------------AGGTAGAT---ACA GTTG-TTATCCCTGTTTT-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------ACAGATGAGAAA----------------- --ACTGAGATGCAGAGAGCTCAAGGAACCTGTCTGG >Ceratotherium_simum TTTGCAATAAGAAATGTTTTTTAAAAGATACAGAGTATAATTATAATAGTAA-TAACACCCAGCACTTACCATGTACTAG AGACTTTGTGTACTTTTCTATGTGCTTTATTCATCTCCTCCTCCAAACAATGC--TATG---AGGTAGAT---------- ---------AAATTTTTTTTTCTTATGTGAAGGGAACAGT-------ATTTTTTTT----ACTGAGATATAATGGACATG GAATATTATATTA-TTTTCAGGTGTGCAGCATAATGATTTGATTT-TAT----ATCTATTGCAAAATGATCACCACGATA AGTCTAGTTA--ACGTCCGTCACCACGCATAGTTAACAAATTTTGTT-----TTCTTGTGATGAGAACTTTTAAGATCTG CTCTCTTAGCACCTTTCAAATTTACAATACATTATTGTTAACTATAGTTGCTGTAGTTTGCTGTACAT----TACGTCCC CAGGACTTATGTATCTTATGACTGGAAGTTTGTACCTTTTGACCACCTTC----------------AGGTAGAA---ATA GTTA-TTATCCCTATTTT-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------ACAGATGAGAAA----------------- --ATTGAGACACAAAGAGGTTAAGGAACTTGTCTAG >Canis_familiaris TTTGCAACAAGAAAAATTTCTTTAAAACCAAAGAGTATAAT---------AGGTAATATGTAGCATTTACCATGTACTAG TGACCTTCCTTATTCTTCTCCATGCTGAATTCATTTCAACCTTCTAACAACCT--TATG--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------AAGTAGAT---ATA ATTA-TTATCCCCAAGTT-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------ACAGACAAGAAA----------------- --ACTG-----TTAAGGGGTTAAGTAACCTGTCTAG >Felis_catus TTTGCATTAAGAAATGTTTCTTAAAAGATACAGAGTATAATTACAATAATAG-------CTGACACATACCATTCACTAG TGATTTTCCTTATTTTTCTCAGTACTTTATTCATGTTGTCTTCGT-GCACCCC--TCTG--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------AGGTAGAT---AGA ATTT-TTATCCCCATTTT-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------ACAGGTGAGAAA----------------- --ACTA-----GTAAGGGATTAAGTAACCTGTTTGG >Manis_pentadactyla TTTGCAAT---AAATGTTTTTTAAAAGATACAGGGTATAATTACAATAGTAAC---------ATACTTAGCATGTACTAG GGACCTTTATGATTTCTCTATGCACTTTATT----TCATATTCCTAGCAACTA--TATG--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------ACGTAGAC---ACG ATTA-TTATCCTTATTTT-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------GCTGATGAGAAA----------------- --ACTG--------AGAGGTTAAGTGACCTGTCTAG >Myotis_myotis TTTGTAAT---AAATATTTTTTAAAAGATA--AAGTATAATTATAATATT-------ACTTAACACTTACTACGTACCAG TAACCTTTCCTATTTTTA-ATGTATTTTATTCATTTCATCCCCCTAATGATAT--TATG--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------AGGTAGAT---ACA ATTA-TTATCCCTGTTTT-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------ACAGATGAGAAA----------------- --ACTG--------------------GCAAGTGTTG >Rousettus_aegyptiacus TTTGTAAT---AAATACTTTTTACAAGATA--GAGTATAATTATAATAGCTA-----ACATAGCACTTGCCTCATACTAA CACCTGTCC-----------TATGCTGTATTTATTTCATCCCACTAACAA-----TATG--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------AGGTAGGT---A-- ATTA-TTATCCGTATTTT-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------ACGGATGAGAAA----------------- --ACTG--------------------ACAGGTCAAG >Erinaceus_europaeus TTT----------------------------------------------------------------------------- -----------------------------------------------CAAAGA-CTTAC--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------TGATAGTT---TGC TTTATTTATTTATAATTAGATACAGACAGAAATTGAGAGGGGAGGGGAAGATAGAGAATGAGACAGAGAGATACCTGCAG CTCAACTTCACCCCTTGTCAAGCTTTCGCCCTGCAGGTGGGGACCAGGGGCTTGAACCTGGGCCTTTGCACACTGTAATG TGTGTGCTTGACCAGGTGCGCCACTACCTTATTTTCTTTTAATTTGTTCATTTTATTTTTTTTTAAATTTTTTAAATATT TATTTTCCCTTTTTGTTGCCCTTGTTGTTTTTTAAATTGTTGTTGTAGTTGTTGTTGTCATTGTTACGGCAGAGAGAAAT GGAGAGGAGAGGGGAAGACAGAGAGGGGGAGATGCCAGGCTAGCATGGGGGTGCCTCTTCTCGGGCGCATATTCTCTGGG TTGGAGAGAACGCAACTGGAGCCAACCTGGGCTGCTACTCACTCATCGACATGAGAGAGATGACCCAGGAGCAGAGCTCT TGGTGGCAAGGCGATTCAGTTCTTTATTGATCAGAGAGCCAAGGCTTTTAAGAGTCTGGAAGTGGCAAGTCAGAAGTTGA AATGGTTAGGAAAGGGGCGGAGAAAGGCGAAAGGGCTGGGAAAGGTAGGAACTACCGTAGCAACTGT----TGCGAGGGT TTTAACTGGTAGGATAAATAATACTCTGCAGGCAGGGAGGGTCTTGAGGGTAGAAAGAAGATAGATCAAAGGAATGGAAT GGGTGGGGATCTTTCAGGCAAAACAATGATTATGTAGATAATAAGGGAGCAGGCCATAGTATCAGGAATGCAGGGTTCTT TGTGAGGCAGGGAGTCTGATAAGACAAGGCAAACCTTGGGGGGTTTTGTCCCTCCTTGCTCGACCTCTCAGTAGAGGTCA AGCCCTGCCAAGCTGAACCATATCCTCACAATTTCCCCGACAGGGAGAGAAAGACACCAGCAGACCTGCTTCACTGCCTG TGAAGTGACTCCCCTGCAGGTGGGGAGCCGGAGGCTGGAACCAGGATCATTTTATATTAATGAGAGAGATACAGAAAGAC AAATACCAGAGCACTGCTCAGCTCTGACTTATGGTGGTGCTGGGGCTTGAACCTGGGACCTCAGAGCCTCAGGCATCAAA GTCTTTTGCAGAACCTTTATGCTATCTCCCCAGACCAACTTTCCCTATTTTACAGATGAAAGA----------------- -------------------TTAAATCACCTGTTCAG >Solenodon_paradoxus TTTGTTTGAAGAAATGTTTTT-AGAAAAGATAGAACGTAATTATAATAGTAACTAACATATAACATTTACCATG---CCA GGACTTT----ATCTTCCTATGTGCCTTATTCATTTCATCCTCCTAACAAC----TATG--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------ATGTAGAT---ACC ATTA-TTATTTCTATTTT-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------ACAGGTGAGAAA----------------- ----------ACAGAGAGGTTAAGTAACCTGTACAG >Homo_sapiens TTTCCAGTAAGGAATGGTTTTTCTATGATATAGAATATAATTGTAGTAG----------CTAAAACTTTCT------TAG GGACCTTTCTTATTGTTCTGCGTGCTATATTCATTTAATCCTCCTAACAAAGT-CTTCG--------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------AGGTAGAT---ACA GTTA-TTATCTCTATTTT-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------ATAGATGAGAAA----------------- --ACTGAGGCACAAAGAGGTTAAGTACCCTGTGCGA Horse281_LINE >L1MA9_3END -------------------------------------------------------------------------------- ---------------------------------TTTTTCCAGCTTTATTGAGGT-----------ATAATTGACAAATAA AAATTGT---ATATATTTAAGGTGTACAACGTGATGTTTTGATATACGTATACATTGTGAAATGATTACCACAATCAAGC TAATTAACATATCCATCACCTCAC-------------------------------------------------------- -------------------- >Sus_scrofa AAGGAAA-GAGTAGTTGCTAGGAA-AAACACAGGAA-----AAGAGACATT---TCATAGATAGAGACATACATACATAC GTACACACATACATAAACACATAGGTTTTT--------------TAACTGAGGT-----------ATAATTGACATTATA ACATTATAACATGAGTTGCAGGTGTACAACATAATGATCTGATATTTGTATATATTTTAAAAT-ATCACCACAGGAATTT AAGTT-------CCA------------TCTCAGGTAGATATTTT---GACAAGATTTTGCTACATGTCGTGATGAGATTC ATAAAATATTCAGTAAAATT >Bos_taurus AAAGAAA-GAGTAGTTGCTAGGGA-AAACATTAGAAATGAGAAGAGAGATT---TCTT-GATAGATCCATACATACATAC ATACGTATATACACAGATA-------TTTT--------------TTACTCACATATATAATCATCATAATTGACA----- ----TATAAGTTTAGTTACAGGTGTTTAACATGATGATTCAATATTTGTAAATATTATAAAAT------------AAATC AAGCTACCCT--CCA------------TCTCAGGTAGATATTTT---CATG-GATTTTGCCACATGCTCTGATGAAACCC ACAGAATACTCAGTA---TT >Equus_caballus AAGGAAA-GAGTAGTTGCTGGAGAGAAACACTGGAAAAGAGAAGACAGAAT---TCTCAGGTAGAGATATATTTATATAT -----TATATATATATATAATATTCTTTTT--------------TTACTTAGGT-----------ATAACTGACA-TATA ACATTAT---ATTAATTTCAGGTGTATAAGATGATGCTTTGATATTTGTATATATTGTGAAATGATCA-CACAATAAGCC CAGTTAACAT--CCA------------GCTCAGGCAGATATTCT---GATGAGATTTTGCTACATGTTGGGAAGAAATCC ACAAAATCCTCAGTAAAATT >Ceratotherium_simum AAAGAAA-GAGTATTTGCTGCAGA-AAACACTGGAAAAGAGAAGACAGAAT---TCTCAGGTAAATATAAATATATATAC --------------------------TTGT--------------TTAATGAGGT-----------ATGATTAACA-TAAA ACATTAT---ATTAGTTTCAAGTGTACAACATAATGCTTCGATATTTGTGTATATTGTGAAATGATCACCAAAATAAGTC TAGTTAACAT--CCA------------TCTCAGTCAGATATTGT---GACAAGATTTTGCTACATGTGGTGATGAAACCT GCAAAATCTTCAGTAAAATT >Canis_familiaris AAGGAAA-GGGTAGTTGCTGGGGA-AGATGCTGAAAGAG--AAGAGAGAAT---TCCCAGGTAGCTA------------- ---------------------------TTT-------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------GACAAGATTTTGCTGCATGCCGTGATGAAACCC AGAGAATCTGCGCTGAAATT >Felis_catus AAGGAAA-GAGTACTTGCCAGGGA-AGACACTGGAAAAGAGAAGAGCTACT---TCTCAGGTAGGTAT------------ --------------------------TTTT-------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------GACAAGATTTTGCTACGTGCGGTGATGAAACCC AAAGATTCTGCAGGACAATT >Manis_pentadactyla AAGGAAA-GAGAAGTTGCAGAGGA-AACCTCAGGAAAGGGAGGAGAGAAAT---TCTCAGGGAGGAA------------- --------------------------TTTT-------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------GACAAGATTTTGCTGCATGTTGTAGTGAAACCC GTAGGATCTTCAGTAAAATT >Myotis_myotis AAGGAAA-GAGTAGTTGTTGGGGA-AAACAGTGGAAAGGAAAAGAG--AAT---TCTCAGGTAGATA------------- --------------------------TTTT-------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------GACAAGGTTTTGCTACCTGCAGTAAAGAAACCT ACAAAATCTTCAGTAAAATC >Rousettus_aegyptiacus AAGGAAA-GAGTAGTTGCTGGGGA-AAACACTGAAAAGGAGAAGATGAAAT---TCTCAGGTAGATA------------- --------------------------TTTC-------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------GATAAGAT--TGTTACATGTGGCGATGAAACCC ACAAAATCTTCAGTAGAAGT >Condylura_cristata AAAGAAA-GAGTAGTTGCTGGAGGAAAACAGCAGACAAGAGAGGAAAGAAT---TCTCCGGAGACTA------------- --------------------------TTTC-------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------GACAAGATTTTGCTGCTTATTATGATGAACCCC AGAAAATCTTTAGTAGAATT >Sorex_araneus AGCAGAG-GAGTAGATGCTGTTGA-AAGGACTGAAATTTAAAAG-GACACT---TCTTAGATA----------------- --------------------------TTTT-------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------GTCCAAATTCTGCCATACTCAGTGATAAAACCA AAAAAAAATCTA-TAACACA >Homo_sapiens AAGGAAAAGCACAGTCACT-AAGA-AAAAATT-----GGGAAAAAAAGAAT---TCTCAGGTAGATA------------- --------------------------TTTT-------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------GACAAGATTTTGCCACATGTTGTGATGAAATCC ACAAAATCTTCAGTAAATCT Horse287_LINE >L1MAB_EC -------------------------------------------------------------------------------- --------------TTTTTTTTTTTCAGTTTTATTGAGATATAATTGACATATAACATTGTATTATGTTTAAGGTGTACA ACAT----AATGATTTGATATATGTATATATTGTGAAA--TGATTACCACAATGAAG-TTAATTAACACATCCATCACCT CACATAGTTACAAATTTTTTTTTT-------------------------------------------------------- -------------------- >Ailuropoda_melanoleuca CTGT--AT-AACA------TCC-TTTTTGTT-----CATGTATTCATTCACTTCTTT--------CACAAATG---TTT- ATTCACTTTTT---------------------TTTTAAAT-----------ATGACATAGCATTAAGTTTTAGGAGCACA GTGT-------AATTTGATATTTGTATTTATTGCAAAAAGTGATCACCACAGTAAGT-TTAGTTA--ATATCTGTCACCA TACATAGTTACT---------------TTTATTGACTTCTT---GATTTGTGTTGGGTACTATGATGTAGTCAGAAACAA GACAAACTTG----TCTGGG >Felis_catus CTGT-AGT-AACA------TAC-TTTTTGTT-----CATGTACTCATTCGCTTACTC----CTTTCATGAATG---TTT- ATTGACTTTTT--------------------TATTGAAATATAATTGAC--ATAACTTTAA-----GTTGCAGGAGCACA GTGT----AATGATTTGATATTTGTATAAATTGCAAAAAATGATCACCAC---AAGT-CTAGTTG--ATATCTCTCATCA TTCATAGTTACT---------------TTTGTTGACTTCTT---AATTTGTGTTGGGTCCTATGATGTAGTCAGAGACAA AACAAAGTTGG---TCTAGG >Manis_pentadactyla CCGT-AGTAAACA------TCTTTTTTTGTT-----CATGTGTTCACTCATTTACTTACTGCTTTCACAAATA---TTT- ATTGACTTCTT-------------TT-------TTGAGTTACAGTTGAC--ACAACATTA------GTTTCAGGTGTGCA GCAT----TATA---------CTGCACATACTGTAAAA--TGGTTGCCACAATAAGTCCCCATTA--ATGCCTGTCCCCA TGCATAGTTATG---------------CTTACTGATGTCTT---GATTTGTGCTGGGTACTATGATGTAGTTAGAAACAA GACAAAC-TGG---TCTAGG >Sus_scrofa CTGT-AGT-AACA------TCC-TTTTTGTT-----TATGTATTCATTTACTCACTCACTACTTTGACAAATA---TTT- AGTGACTTCCT---------TTTTTTAAAAAAATTGAGGACTACTTGCC--ATAACATAATATTA-GTCTCAAGTATACA ACAT----AATGATTTGATATTTGTATACACTGCAAAA--TGATCACCTCTGTAAGT-CCAGTTG--ACATTTGTCTCCA TACATAATTACA---------------TTTATTGATTTCTT---GATATGTGCCAGATACTAAGATATAGGTAGAAACAA GACAAATTTGG---TTTAGG >Tursiops_truncatus CTGT-AGT-AATA------TCC-TTTTTGTT-----TAT-TATTCACTCACTTCCTCACTCCTTTCAGAAATA---TTT- ATTGACTTCCT------------TTTTAAAAAATTGAGGTATAATTGAC--ATAACATTGTATTA-GTTCCAGGTGTACA ACAT----AATATTTAGATGTTTGTATATACTGCAAGA--TGACCACTTCAGTAAGT-CCAGTTA--ATATTTGTCTCCA TACATCGTTACA---------------TTTATTGACTTTTT---GATATGTGCTGGGTACTATGATGCAGTTAGAAACGA GACAAACTTGG---TTTAGG >Equus_caballus CTGTAAGT-AATA------TTC-TTTTTGTT-----CATGTATTCATTGACTTGCTTACT-CCTTCACAAGTG---CTT- ATTGGCTTTTT-------------TT------ATTGAGGTATAATTGAC--ATAACATTATAGTG-GTTTCAGGTGTACA ACGT----AATGATTAGATATTTGTATATATTGCAAAA--TGATCACCG---------CCAGATA--ACATCCGTCACCA TACGTAGTTCCA---------------TTTATTGACTTCTT---GATTTGTGCTGGGTACTATGATATAGTTAGAAACAA GACAAACTTGG---TCTAGG >Ceratotherium_simum CTGT-AGT-CACA------TTA-TTTTTGTT-----CATGTATTCATTGACTTACTC----CTTTCACAAGTT---CTT- ACTGACTTTTT------------TTT------ATTGAGGTATAATTGGC--ATAATGTTTTATTA-GTTTCAGGTGTACA ATGT----AATGATTCGATATTTGTATATATTGCAAAA--TGATCGCCACAATAAGT-CCAGGTA--ACATCCATCATCA TACATAGTTACA---------------TTTATTGACTTCTT---GATTTGTGCTGGGTACTATGGTATAGTTAGAAACAA GACAAACTTGG---TCTAGG >Desmodus_rotundus CTGT-AGT-AACA------TCC-ATTTTGTT-----CAGATATTCATTCACTTATTC----CTTTCACAAATA---TTT- ATTGACTTCTT-----------ATTTTTAAAAAATGAGTTGCAATTGAC--ATAACATTATATTA-GTTTCAAGTGTACA ATGT----AACAACTCAACATTTGTATATATTGCAAAA--TGATGACCACAGTATG-----------ATTACCACCACTA TAAATA---------------------GTTACTAGCTTCCT---GATTGGTGCTGGGTACTGTGATACAGTTAG----AA GACAAACGTGGCCATCTAGG >Rhinolophus_ferrumequinum CCGT-AGT-GACA------TCC-TTTGAGTT-----CAGGTATTCACTCACTTATTT----CTTTAACAAATT---T--- ATTGACTTTTT---------------AAAAGAACTGAGTTATAATTGAC--ATAACATTATATTA-GTTTGAGGTATATA ACATAATGAATGATTCGCTATTTGTACATATTGTAAAA--TTGTCACCCCGGTATGT-CCAGTTA--ACATCCATCACTA TTCATAACTGCA---------------TTCATTGGTTCCTT---GGTGGGTGCTGGGTGCTATGATACAGTTAGAAAAAA GACAGGCGTGG---TCTAGG >Condylura_cristata CTGT-AGT-AATACAGCAGCCA-GTTTTTTT-----CAAGTTCTCAT-CACTT--------CTTCCATATATT---TT-- ATTGACTT-AA--------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------GACTTTTGTTGG-------------ATTAGAAACAA GACAGACTTGA---CCTAGG >Uropsilus_gracilis CTTT-AGT-AACA------TCA-GTTTTTTT-----CATGTGTTCAGCACATTTTCC-----ATAAATAAATT---TTTT TTTTAC---TA--------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------GATTTCAGCTGG-------------GTTAGAAGCAA GACAGACTTGG---TATAGG >Homo_sapiens CTGT-AGT-AACA------TCC-TTTTTTTTTCTTGTATTTATTCATTCATTTATTT--------CACAAATA---TTT- ATTGATGGCTT--------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TATTTGTGCTGGGTGCTCTGATACAGTTAGGAACAA GACAAACTTGG---TCTAGG Horse289_LINE >L1MAB_EC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------TTTTTTTTTTTCAGTTTTATTGAGATATAATTGACATATAACATTGTAT TATGTTTAAGGTGTACAACATAATGA------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------- >Equus_caballus TCATTGACATTATCAATAGAACAGGAGCCTTGGAACTACCATAGACCCAA---CATAGTAGA--GTTTT----------- -------------------------------------------------------------------------------- ---TTTTTAATTGAGT---------------------------------------------------AT-ATCGACATAA CATTCTATTACTTTCAGGTGGGTTTTTT------------TTGTTTTTTATTGAGGTATAATCGACATA--ACATTATAG TA-GTTTCAGGTGTA--------------CACAGTAGGGTTTTTAAA---AAACTAAAGTTGGTAATTAAACATCA---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------- >Ceratotherium_simum TTATTGGTATTATCAATATAACAGGAGTCTTGGAACTACTGTAGATCCAA---CATAGTAGGTTATTTT---TTTTTTTT NNNNNNAACCCGGGCCTCCGCAGCGGAACGTGCGCACTTAACCGCTTGCGCCAC------CGGGCTGGCCCCAGTAGGTT ATTTTTTTAATTGAGT---------------------------------------------------ATAATTGACATAA CATTATATTAGTTTCAGTTGGGTTTTT-------------TTGCTTTTTATTGAGGTATAATTG-------ACATTATAG TA-GTTTCAGGTGTA--------------CATAGTAGGGTTTTTTTA---AAACTGAAGTTGGTAATTAAATATCAG--- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------TATCTGGCTTCA----------------- -------------------------------------------------------------------------------- -------------------------------------------------TAAAACTATCTG >Myotis_myotis TTATTTGCATTGTCAACAGAATAAGAGTCTTAGAACTACTGTAGACCCAA---CACAGTAGATTTTAAT----------- ----GGAGTACAGGGGTTGGCAAAAGTAGGTCTACAGTTGTCCGTATGGAAAAAGACATGCAGGTTATAATTATTACTGT AGTTTATTAACTGTGTTTCATGTACTCACAAGATCAGTACTATAAATCTATTCTTGCCCACTCCTGAATAATTGACA--- -------TTCGTTTCAGGTGGGTTTTTGTGTGTGTGCTTTTTATTTTTTATTGAAGCATAATTGATATA--ACATTGTAT TA-GTTTCAGGTGTA--------------CACAGTAG--ATATTTTT---AAACCAAAGTAGGTAACTAAATATCAG--- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------TATCTGGGCTCA----------------- -------------------------------------------------------------------------------- -------------------------------------------------TAAAAATATTTA >Rousettus_aegyptiacus TTATTTGCATTATCAACAGAACAGGAGTCTTGGAACTACTGTGGACCCGA---CACAGCAGGTTGTTTT----------- -------------------------------------------------------------------------------- --TTTTCAAATTGATT---------------------------------------------------ATAACTGACA--- -----TATTAGTTTTATGTGAGGTTTTGGAGGG-------CTTTTTTTAATTAAGGTATTACTGATATA--ACATTATAT TA-GTTTCAAGTATA--------------CATAGTAG--GTATTTTT---AAACTAAAGTTGGTAATTACG--------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------- >Canis_familiaris TTATAGGCATTAGCAACACAATAGGAATCTTGGGCCTAGCATAGACCCAC------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------CATAGTAG--GTATTTTT---AAACTAAAGTTGGTAATTAAATACGAA--- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------TATCTGGCTTCA----------------- -------------------------------------------------------------------------------- -------------------------------------------------TAAGAATATTTA >Felis_catus TTATTGACATTATCAACACAACAGGATTTTTGGACCTA--------ACAC------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------CATAATAG--GTATTTTT---AAACTAAAGTTGGTAATTAAGTATCAG--- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------TATCTGGCTTCA----------------- -------------------------------------------------------------------------------- -------------------------------------------------------TATTTA >Manis_pentadactyla TTAACGGCATTATCAACA-----GGAGTCTTGTAACTACTGTAGATGTAA------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------CATATTCTATGTATTTTT---AAACTAAAGTTGGTAATTAAATAACAG--- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------TATCTGGATTCA----------------- -------------------------------------------------------------------------------- -------------------------------------------------TAAGAATATTTA >Vicugna_pacos TTATTGGCATTACCAACGGAACAGGAGTCCTGGAACTAATGCAGACCCAA------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------GAGAGTAG--GAATTTTA---AAACTAAAGCTGGTAATTAAGTATCAG--- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------AATCCGGCTTCA----------------- -------------------------------------------------------------------------------- ------------------------------------------------------ATATTTG >Bos_taurus TTAATGGCATTAGCGACAGAACAGGAGTCCTGGAACTACTACAGACCCGA------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------CAGAGTAG--GTATTTTT---AAACTAAAGTTGATATCTAAATGGCAGTAT CTCTGGGACTTCCCTGGTGGGTCAGTGGTTAAGACTCTATGCTTCCACTGCTGGAGGCATGGGTCTGATCCCTGGTTGGG GAGCTAAGGGCTTCCCTGATGGCTCAGTGGTAAAGAATCTGCTTGGAATGAAGGAGACCCAGGAGTTGCAAGTAGCTGAG ATCCAACATGCTGCACAGTGTGGCCAAAAAACAACAACAAAAAAAGAGGAATATCTGGCTTCA----------------- -------------------------------------------------------------------------------- -------------------------------------------------TAAGAATATGTG >Condylura_cristata TTATTGGCATTATCAAAAGAAAGGGAGCCTTGGAACTACTACAGATCCAA------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------TACA-TAA----ATTTTT---AAACTAAAGTTGGTAGTGAAATATCAG--- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------TATCTGGCTTT------------------ -------------------------------------------------------------------------------- -------------------------------------------------TTAAGATATTTG >Sorex_araneus TAATTAACATTATCAACAGA-----AGTCTTGGAAATACCATGGACTTAA------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------AGTTATCA--ATACTTTT---AAACTAAAGTCG-CAATTAAATATCAG--- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------TATTTGGGGCCAGAGATAGAACAGTAGGT AAGACCTCGCCTTACTTGTAGCCAACCTGGGTTTGATTCCTGGCACTGCAGATGGTCCCTTAAGCACTGCCAGAAACAAT CCCTTAGCTCAGTGCCAGGAGTAAGCCCTTAGCACAGCTGGGCGTGAAGCAAAAATTTTTA >Cavia_porcellus TTATTGGCCTCAACAACAGAATAGAAGCTTTGGAACTA-TATGGTCTCAA------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------CCTAATAA--GTATTCTT---AAACTAAAGCTGGCAATGAATTATCTG--- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------TGTCTAGTGCCA----------------- -------------------------------------------------------------------------------- ------------------------------------------------TAAAGAGTATTTG Horse290_LINE >L1MAB_EC -------------------------------------------------------------------------------- ------TTTTTTTTTTTCAGTTTTATTGAGATATAATTGACATATAACATTGTATTATGTTTAAGGTGTACAACATAATG ATTT---------------------------------------------------------------------------- --------------------------------------------------- >Equus_caballus ATTTGATCTTGTAGTTCTTATGATTTATCTACATAAAAGGTAATATACTTTTGTTATTTT-CCC---CCAAGGGCAATAT TTT----------------TTT--ACTAAGCTATAATTAACACATAATATTATGTCA-GTTTCAGATGTACAACAT---- -------CCAAGGATA---TTTT---ATTAATAACGCATGCTCTTATAGAACATT------------------------- ----------------------TTTTTCTCTTTA--CTTTCTTTTATCTAC >Ceratotherium_simum CTTTGATCTTGTAGTTCTCATGGTTTATCTACATAAAAGGTAATATACTTTTGTTGTTTT-TCA---TCAAGGGCAGTAT TTT----------------TT---ATTGAGGTATAATTAACATATAATATTATATTA-GTTTCAGGTGTACAACAT---- -------CCAAGGATAATATTTT---ATTAATAACAAATTCTCTTATAGAACAT-------------------------- ----------------------TTTTCCTTTTTA--CTCTCTTTTACCCAC >Myotis_myotis GTTTGATCTTGTGGTTCTCATGTTTTACCTAAATAACAAGTGATATGCTTTTGCTATTTC-CCC---TCAAGGACAATAT ATC----------------TTT--------------TTAATATATACTATTATATTA-ATTTCAGGTATACAACAT---- -------CCAAGGACAATTTGTT---ATTAATAACAAATGCTCTTATAGAACATT------------------------- ----------------------TTACCTTCTTTT------------TCCAC >Rousettus_aegyptiacus TTTTGACCTTGTAGTCCTTGGGGTTTATCTATATAACAGGTAATATGCTTTTGTTTTTTT-CCA---CTGAGGACAATAT ATT----------------TTTTTATCGAGGTATAGTTAACCTATAAGATTATATTA-GTTTCAGCTATACAACAT---- -------TCAAGGACAATATTTT---ATCAACAACATATATTCTT----------------------------------- ------------------------------------TTTACTTTTATTCAC >Canis_familiaris TTTTGATCGTATAGTTCTCATGGTTTGTCTACATAAAAGGTAATTTACTTTTGTTCTTTT-CCC---CCATGGACAATAT TTT----------------------------------------------------------------------------- --------------------------ATTCATAACAATTATTCTTATAGAATAT-------------------------- ----------------------TTTTTCTTTTCA---CTTTTTTAATCTAC >Felis_catus TTTTGATCTTATAGTTGTCATGGTTTATCTACATAAAAGGTAATACACTTTTGTTATTTTCCCC---CCAAGGGCAATAT GTT----------------------------------------------------------------------------- --------------------------ATTAATAACATTTGTTCCTATAGAACA--------------------------- ----------------------TTTTTCTTTTTA-CTTTCTTTTTATCCTT >Manis_javanica CTTTGATCTTGTAGTTCTCATGTTTTATTTACATAAAATGTAGGATGCTTTTGTTAGTTT-TCC---CCAAAGACAAT-T TTT----------------------------------------------------------------------------- --------------------------ATTAGGACCACATGTCCTTACAGAACACT------------------------- ----------------------TTCTCCTCTTAT--TTTCTTGTTGTCCAC >Sus_scrofa CTTCCATCTT---GTTCTTGTGGCTTATCTACAAGA-------------TTTTTTACTTT-CCC---CCA-GGACAATAT TTT----------------------------------------------------------------------------- --------------------------AGTAATAATGA-TGTTCTTTTAGATCATT------------------------- ----------------------TTTTTCCTTT------TTTTAAAACCCAT >Bos_taurus CTTTGATCTTGTAGTTCTTGCAGCTTATCTACATAAAAGCTAGTGTGCTTTTTGTGATGCTCCC---CCA-GGACAATAT TTT----------------------------------------------------------------------------- --------------------------ATTAATAACAAA-GATCTTATAAA------------------------------ ------------------------TCTTGTTTTA--TTTTTAAAAATCCAC >Erinaceus_europaeus CATTAATATTATAGTTCTCATAG-TTATTTA--TAAAACGCCATGTGCTTTTGTCATTTT-CCC---CCAAGGACAACAC TTT----------------------------------------------------------------------------- --------------------------ATAAACAACAAATGTTCTTCTAGAACATTTCCTCCTCCTCCTCCTCTTCTTCTT CTTCTTCCTCTTCTTTTTCTCCTCCTCCTCCTCCTCCTTCTTTTTGTCTAC >Cavia_porcellus CTTTGACTTTTT------------------------CAGGTAATGTGCTTTTACTGTTTT-CCT---CCAAGGACAGTAC TCT----------------------------------------------------------------------------- --------------------------ATTAACAATAAATGTTCTTATGGGTCATT------------------------- ----------------------TTTTTTCTTTTTGCCTTCTTTCTGTCCAC Horse291_LINE >L1MAB_EC -------------------------------------------------------------------------------- -AAAAATTTGTAACTATGTGAGGTGATGGATGTGTTAATTAACTTCATTGTGGTAATCATTTCACAATATATACATATAT CAAATCATTATGTTGTACACCTTAAACATAATACAATGTTATATGTCAATTATATCTCAATAAAACTGAAAAAAAA---- --------------------------------------------------------------------------- >Equus_caballus TGTGAGTCATCAAAATCCTTAGCAATAA--------CTTCCACTTTTGCCCTGCTATT---AAAAA-TG-----TATG-- -----------ATCTGTGTGAGAAGATGGT--CGTTAGCCGAACCTATTGTAGTGACCATTTCACAATATGT--GTAAAC CAAACCATCATACTGTACACCTTAAAC-TTATACAGTGATGTAGCTCAATTATTTCTCAATAAAACTGGAA--------- AAAAA-TGGGTGAGATG---AAA--ACTGC--AAAAACTTAAATAATATGTTAGAGTCAATT-TTAGATTTCTAA >Tapirus_indicus CGTAAGTCATCGAAATCCTTGGTGACAA--------CGCCTACTTTTGCCCTGCTATT---AAAAA-CGGGTGAGATG-- -----------ATCTATATGAGAAGATGGA--TGTTAGCTGATCCTATTGTAGTAATCACTTCACAA-ATAC--ATAAAT CAAACCATCATGCTGTATGCCTTAAAC-TTATGCAGTGATGTGTGTCTGTTATGTCTCAGTCAAACTGGAA--------- AAAAA-TGAGTGAGATG---AAA--GCTGC--AAAAACTTAAGTAATATGTTAGAGTCAACT-TTAGATTTCTAA >Myotis_myotis TG-GAGTCAACAAAATCCTTAGTGATAA--------CTTCTACGTTTGCCCTGCTATT---AAGAAATGAGTGAGATG-- -----------ATCTATACGAGATGATCAA--TGTTAGCTGAATCTACTG--ACAATCATTTCACAAT-TAC--GTAAAT CAAACCATCATG---TATACTTTCAAG-TTATACAGTGATATATACCACTTATTTCTGAATAAAA-TG-AA--------- AAAAA-TTAGTGAGATG---GAA--GCTTT--AAAAAAT-AAATAATATGCTAATCATTTTT-TTAAATTTTCAA >Rousettus_aegyptiacus TGTAAGTCATCAAAATTCTTAGTGATAA--------CTTCTACTTTTGCACTGCTATT---AAAAA-TGAAGGAGATG-- -----------AGCTATATGAGAAGATAGA--TGTTAGCTGAACTTATTGTAGTAATCATTTCACAATACAT--GTAACT CAAACCATCATA---TACACCTTAAAC-TTATAGAGTAATTTATGCCA-TTATTTCTTAATAAAACTGAAAAAAAAA--- AAGAA-CTGGTGAGATG---AAA--GCTTTAAAAATAATAAAATAATATATTAGAGTCTGTT-TTAGATTTCCAA >Canis_familiaris TGTGAGACATCAAAATCCTTAGTGATAAGGATCCTTAGTGCACCTTTGCCCTGCTCTT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- AAAAA-TGAGTGAGATG---AAA--ACTTC--AAAAAATTAAACAATATGTTAGATTTTATT-TTAGATTTTGAA >Felis_catus TGTGAGTCACCAAAATCCTTGGCAATAA--------CTTGTACTTTGGCCTTTCTATC---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- AAAAA-TGAGTGAGATG---AAA--GCTTC--AAAAAATTAA-----ATGTTAGAATCTATC-TTAGATTTCTAA >Manis_pentadactyla TGTGAGTCATTAAAAACCTCAGTGATAA--------CTTCTACTTTTGTCTTGCTATT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ACAAA-TGGGTGAGATG---AAA--GCTTC---AAAAATTAAATAATATTTTAGAGTCTATTCTTAAATTTCTAA >Vicugna_pacos TGTAAGTTATC-AAATCCTTAGTGGTAA--------CTTCTACTTTTGTGCTGCTATT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- AAAAA-TAGGTAAAATG---AAA--GCTTC--AAACAAT-AAATA--ATGTTAGAGTCTATT-TTAGATTTCTAA >Bos_taurus TGTGAGTCATC-AAATCCTTAGTGACAA--------CTTCTACTTTTGCCCTGCTATT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- AAAAA-GAGGTGAAGTG---AAA--ATTTC--AAAAAAT-AAATAATATGTCAGCATTTATT-TTAAATTTCTAA >Uropsilus_gracilis CATGGATCATCAAAATCTTTAGTGATAA--------CTTCTACTTTTGCCTTCCTATT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- AAAAA-TAGATTAAAAA---AAAAAGCCTC-------CTGGAAATGAATGTAAAGATCTAC--TCGGGTTTTTGA >Sorex_araneus TGTGAGTCATCAAAATCCT-AGTAATAAA------TCCTC-ATTTTTGTCCTGTTTTA---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- GAAAA-TAGAGGAGGCA---GAA--GCTTT--GATAATTT---TACCCTTTTAGAGATTACGTTAGGTTTTTTGA >Homo_sapiens TGTAAGTCCTCTAAATTCT----------------------ATTCATGTCTTGATATT---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- TAAAAATGAATGAGATG---GAA--GTTTC--AAAAATTTAAATGGTATATTGGAGTCTACT-TTAGATTTCTAA Horse293_LINE >L1MAB_EC -------------------------------------------------------------------------------- TTTTTTTTTTTCAGTTTTATTGAGATATAATTGACATATAACATTGTATTATGTTTAAGGTGTACAACATAATGAT---- -------------------------------------------------------------------------------- --------------------------------------------- >Equus_caballus CCCTGGAGTCTCCAGAAGGAACCAGTC-------TGGCCAACACCTTGATTTTAGCTCCA---TA-AAACTCCTTTT--- --------------CTCAATTGAGATATAACTGACATATAGCACTATATTAGTTTCAA-GTGTGA-TA-----------A GACTCATTTTT---AGACTCTGACCTCCAGAACTCTAAGAG-AATA---------------------------------- ------------------------AATTTGTATTGTTTTAAACTA >Ceratotherium_simum CCC--GAGTCTCCAGAAGGAACCGGC--------CTGCTGACACCTTGATTTTAGCTCCA---TA-AAACTCCTTTT--- --------------TTCAATTGAGATATAATTGACCCATAACATTATACTAGTTTCG-GGTATATGTA-----------A GAATCAC-TTT---AGACTCTAATCTCCAGAACTCTAAGAG-AACA---------------------------------- ------------------------AATCTGTATTGTTTTAAGTTA >Condylura_cristata CTCTGGGCTCTCAAGAAGGAAAGAGCC-------TTATTTATACCTTGATTTTAACTCCC---TG-AGACTCACTTT--- --------------TTAAAAAAACTTACCATTGACATATAGCATTATGTGAGTTTCA-GGTGTATGTA-----------A GACTCAT-TTT---AGAGTCTCACTTACAGAAGGCTATTAGTAGTA---------------------------------- ------------------------AACTCATGTTGATTCACATTA >Solenodon_paradoxus TCTTGGAGTCTCTAGA-GGAACTAGCC-------CTGAAGATATCTTGATTTTAATTCTT---ACAAGATTCATTAA--- ---------------AAAACTGAAATATAGTTAATACATAACAACATATTAGTTTCA-GGTGTTTATA-----------C AACTCAT-TGT---AGACTCTGACCTACAGAAACAT--GAG-AATA---------------------------------- ------------------------AATTTGTGTTGTTTTAAGCTA >Canis_familiaris CCTTGGAGTCTCCAGAAGTAATCAGCT-------CTGTTGACACCTTGATTTTAGCTCTA---TACAGACTCAGTTT--- -------------------------------------------------------------------------------- --------------AGATTGTAGCCTCTAGAACTGTAAGGA-AATT---------------------------------- ------------------------AATTTGTATTGTTTTAAGCTA >Ailuropoda_melanoleuca CCTTGGAGTCTCCAGAAGGA--CAGCT-------CTGTGGACACCTTGATTTTAGCTCCA---TAGAGACTCAGTTT--- -------------------------------------------------------------------------------- --------------AGACTGTGGCTTCCAGAACTCTAAGAA-AACTCTAAGAAAACTAAAAAAGAAAACTCTAAGAAAAC TAAAAGCTAAAAAAAAAAAAAAAAAGCTAAAGCTGTTTTAAGCTA >Manis_pentadactyla CTCTGGAGTCTGCAAAGGAAGCCAGC--------CCCCTGGCACCTTGACATTAGTTCCA---TC-AGACGGATTTT--- -------------------------------------------------------------------------------- --------------AGATTTTGACCTCCAGAACTCTATAAG-AATA---------------------------------- ------------------------AGTTTGTGTTGTTTTCAGGTA >Sus_scrofa CCTTGTAGTTTCCAGAAGGAA-CATTG-------ATGCTGATACCTTGATTTTACCTCCA---TT-AGACTCATTCT--- -------------------------------------------------------------------------------- --------------AGATTTTGACCTCCAGAACTCTAAGAG-GATA---------------------------------- ------------------------AGTT-------------GCTA >Tursiops_truncatus CCTTGGAGTCTCCAGAAGGAATCAGTA-------CTGCTGACACCTTGATTTTACCTCCA---TA-AGATTTATTTT--- -------------------------------------------------------------------------------- --------------AGATTCTAAACACCAGAACTCTAAGAG-AACA---------------------------------- ------------------------AATGTGTATTGTTTTAATCTA >Desmodus_rotundus CCTGGGAGCTTCCAGAAGGCACCAGCCACCAGCACAGCTGACATCTTGAGTTTAGTTCCA---TA-AGAATCATTTT--- -------------------------------------------------------------------------------- --------------ATACTCCAACCTGTAGAACTCTAAGAG-AATA---------------------------------- ----------------------------------------AGCTA >Rousettus_aegyptiacus CCTCGGAGTTTCCAAAAGTCAGCAGCC-------CCACTGACGTCTTGATTTTAGCTCCA---TA-AAACCCATTTA--- -------------------------------------------------------------------------------- --------------AGACTTTGACCTCCAGAGCTCTAAGGG-AATA---------------------------------- ------------------------AATTTGTATTGCTTTAGGCAA >Homo_sapiens CCC-AGAGCCTCCAGAAGGAGACAGTC-------CTGTCAACATCTTGATTTTAGCTCTT---TA-AGACTAAGTTA--- -------------------------------------------------------------------------------- --------------GGACTCTGACCTCAAGAACTCTAAG-G-AATA---------------------------------- ------------------------AATGTATATTGCTTGAAACTA Horse294_LINE >L1MB3_EC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------AAAAATGGTTAAGATGGTAAA-TTTTATGTTATGTGTATTTTACC ACAATAAAAAAAA------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------------- >Equus_caballus ACCACC-TGAGGGCCGGAGAAACAAAATG--------------------------------------------------- -----------------------------------------------------AAGAA---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --GTCAGTACAGTATTACC----------AGA-----------------TGGTAAATTTTTATGTTACATGTATTTTAAC ACGATAAAGAAAACTAAGGGAA----AAAA----CTC-AGA---AGCTT-AGA--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------GGA--AGGGC--TGCAAAGCTGAAAA--------TCAGACCA-----------------CTCTGCT >Ceratotherium_simum ACCACC-TGAGGGCTGGAGAAACGAAAGG--------------------------------------------------- -----------------------------------------------------AAGAA---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --GGTAGTACAGTATTACT---AAAACTTAGA-----------------TGGTAAATTTTTATGTTATATGTATTTTAAC ATAATAAAGAAAATTGAAAAAGA---AAAA----CTT-AGA---AGCTC-AGA--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------GGA--AGGGCTCTGCAAAGCTGAAAA--------TTAGACCACTGACGAGGGGGCACTGCTCAGCT >Condylura_cristata AGCCCTCTGAGTGCTGGAGACACAAAAGA--------------------------------------------------- -----------------------------------------------------GAGAA---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --ACT-----GATTTTACT---AAAATTTCAA-----------------GGG--AATTTTTATG-----TGTATCTTAAC ACAATAAAGAAAGTGGAATTTT----AAAA----CAT-AGA---GGCTT-GGA--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------GGA--GGGTC---------CTGAAAA--------TCAGAGCACCAGGGAGGGGCAGTTACTCAGCT >Uropsilus_gracilis ACCACCCTGAGTGCTGGGAAAACAAAAGA--------------------------------------------------- -----------------------------------------------------CAGAA---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --ATT-----GGTCTGATT---AAAACTTAGT------------------GGTAAACGTTCATGTAATGTGTACTTTAAC ACAGCAGAGGAAATGGAATTT-----AAAA----CAAGAGA---CACTT-GGAACACTCTTACACTGCTGGTAGGAATGT AGACTGGTCCAACCACTATGGAAAGCTGTGTGGAGGACCCTCAAGCTACTGAAAATGGAGCTACCATTTGACCCAGCAAT CACTTTTCTAGGAATCTACCCAAAAGAAACCTCAGTACTTATACAAAGGGATACCTGTGCTCAGATGTTTTCTGCAGCAC TATTTATAATTGCAAGGACATAGAAACAACCCAAATGTCCTAAGACAGATGAATGGATGAAAAGGATGTGGTATATATAC ACAATGGAATATTGCTCATCAATTAAAAATGACAAGTTTGGTGAATTTATAAAAACATGGATTACCTAGAAAAATCATTT TAGCAGAACAAAAAAAAAAAACAAATGATTTCACTAATCTATGGGATATAGGAAAAATAAGCGAAAGGCCAGGAGGAAAA GTCCAAACAAGCTAACAATCAAACTAAAGTACACAACTGGGGGGGAGGAGTGGAGATGGGAGGGAGTGGTCAGGGAGGGG TGGTGGTGGATAAACCCCAGGGAAAACAAAGATGTAAAATACATATATTAAAAAATTATTTTAAAATAAATAAATAAAAC GGGAGATGCTTGGATGAGGGCTCTGCAAAGTTGAAAA--------CCAGA------------AGACACTGCTCAATT >Mustela_putorius_furo ACCAACCCGAGGGCTGGGGAAACAAAGGG--------------------------------------------------- -----------------------------------------------------AAGAA---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --GTT-----GGTATTATT------------------------------------------------------------- --------------------------AAAA----CTC-AGA---AGTTT-AGA--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------GGA--AGGGCTCCACACAGCTGAAAA--------TCAGCTCTCTGAGGAGCTGCCCCCCCTGGGCT >Ailuropoda_melanoleuca ACCACCCCGAGGGCTGGGGAAACAAAGGG--------------------------------------------------- -----------------------------------------------------AAGAAGTTGGTACTGGGGCACCTGGGT GGCTCAGTTGGTTAAGCATCTGCCTTCGGCTTGGGTCATGATCCCAGGGTCTTCAGCAGGGAATCTTCTTCTCCCTCTCC CTCTGCCTGCCCTCTCTCTCTCTCCCCCCTCTCTGTCAAATAAATAAATAAAATCTTGAAAAAAACAAAAGAAGAAGATG ATGTT-----GGTATTACT------------------------------------------------------------- --------------------------GAAA----CTT-AGA---AGTTT-GGA--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------GGA--CGGGCTCTGCACAGCTGAAAA--------TCAGCCCTCTGAAGAGCCACCACTGCTGGGCT >Manis_pentadactyla ACCACCCTGAGGGCTGAGGAAACGAAGGG--------------------------------------------------- -----------------------------------------------------AAAAA---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --GTT-----GATATTTTT------------------------------------------------------------- --------------------------AAAA----GTT-AGA---AGCT--GAA--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------GGA--AGGGATCTGCAGAGCTGAAAA--------TCGAACCTCAGAAGAGCCTGCACTGCTTAGCT >Sus_scrofa ACTACCCTGACGACTGGAGAAACAAAA-G--------------------------------------------------- -----------------------------------------------------AAGAG---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --GCT-----GGTACTATT------------------------------------------------------------- --------------------------AAAA----CTC-AGA---AGCTT-GGA--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------GGA--AGGGCTCTGGAAAGCCAAAAA--------GCAAACATCTAAGGAGCAGGCACTGCTCAGCT >Bos_taurus ACCATCATGAGGACTGGAGAAAC-AAGGG--------------------------------------------------- -----------------------------------------------------ACAAA---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --GTT-----GGTACCAAT------------------------------------------------------------- --------------------------AAAA----CTT-AGA---AGCTA-GGA--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------GAA--AGGGCTCCAGAAAGCTGAAAA--------GCAGACTTCTAAGGAGCAGGCACTACTTGTCT >Myotis_myotis ACCACCTGGAAAGCCAGGAAAACAAAGAA--------------------------------------------------- -----------------------------------------------------AAGAA---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --GCT-----GGTAGTTTT------------------------------------------------------------- --------------------------GAAGGGAGTTT-AGA---AGCTT-GGA--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------AAA--AGAGTTCTACAAAGCTGAAAA--------TCAGACCT-----------------CAGGGCT >Rousettus_aegyptiacus ACCACCCTGAGGGCTGCAGAAACAAAGAGAAGTTGGCGGCTTGCTTGATTTATTTATTTTATTGAGTTATTTATTTTTGG CATTTTGTGATGAAACTTACTATTTTGTTTAAATTTCATTTACTTTGTTTTACTAGAA---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --GTT-----GGTGTTTTT------------------------------------------------------------- --------------------------AAAAGGAATTC-AGA---AGCTT-GGA--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------GGA--AAAGCTTTACAAAGCTGAAAA--------TAAAA-----------------------GGCC >Cavia_porcellus AGCACG-TCAGGACAAGGGAAACAAAGGA--------------------------------------------------- -----------------------------------------------------AAGAA---------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --GCT-----GGCACTATT------------------------------------------------------------- --------------------------AAAA----CTC-AGA---AGCATAGGA--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------AA--AAGAC--TGCAAAGTTGGAAACTGAGAACTTAGACCTCTGATCAGGGAGCACAGCACAGCT Horse299_LINE >L1MAB_EC -------------------------------------------------------------------------------- ------------------TTTTTTTTTTTCAGTTTTATTG---------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------AGATATAATTGACATATAACATTGTATTATGTTTAAGGTGTACAACATAATGATTTGATATATGTATAT ATTGTGAAATGATTACCACAATGAAGTTAATTAAC--ACATCCATCACCTCACATAGTTACAA----------------- --ATTTTTTTTTTGTTTKTGTGATGAGAACTTTTAA-------------------------------------------- ---------------------------- >Canis_familiaris TCCTT-AAGAGTGAT--------CATTTTAGGTTCAGGAGATC----AG--------------TTCTCAAACGGTAAA-- -TT-----TTATTTT---------TTTTCCAGTTTTACCG---------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------AGATGTAATTGACATACAGCACTATG-TCCATTCAAGGTGTACAGCACAACTACTTGACTGA--CTGAC ACTGTGCGATGATCACCAGAGTAAGTTTAGTTG----ACGTCCATCGTCCCAAATAGGTACCAAAAAGAGAAAAAAGAAA --AGTTTGCTTTC---CTGGTG-----------------TT---AAAG---CCATTTTAATAAGGTTCTCTCTAGAATGG TAGGT-------TTTGATTTAA---CAC >Felis_catus TAATT-GAGAGTGAT--------AAATTTGAGTATGGGAAATT----AG--------------TTCCCAAATAGCAAA-- -TAAAAG-CTATTTT------GTTTTTTCCAGTTGTACTG---------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------AGATGTAATTGACATCCAGCACTGTA-TAACTTCGAGGTGCACAGCATAATTATTTGACCGA--TTTAT ACTGTGAAACGATCGCCACAATAAGCTTAGTTAATTAACATCCATCATCTCCTGTAGGTACCGAAAAGGGAGAAACAAAA GGTTTTTTTTTTTTTCCTCTTGAG---------------TAAAGAAAG---CTGTTTTAATAAGGTGTTCTCTAG-AAAG TCGGT-------TTGGATTTAA---CAT >Manis_pentadactyla NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN--------------NNNNNNNNNNNNNNN-- -NNNNNNNNNNNNNN------NNNNNNNNNNNNNNNNNNN---------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAT ATCGTGAAATGGTTGCCACA--TAATTTAGTTA----ATGTCCATCATCTCATATAGATACAAAAAAGAGAAAAAGAAAA AGAATGTTTTTTT-TCTTTGTG-----------------GG---AAAC---CTATTTTAATAAGGTATTCTTTAGAAAAG TAGGT-------TTTGATTGAAAAACAT >Sus_scrofa TAGTT-AAGAATAATGTATTT--CAGTTTAAGTTCAGGAAATT----AG--------------TTCTTAAATGGTAAA-- -TTAAAAACTATTTT------------TTCAGTTTTACTG---------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------CAATATAACTGACATATAGCATTGCA-TAGATTTAAGGTATGCAGTGTAATTATTTGACTTA--CATAT ATTGGGAAATGATTACCAAAACAAATTTGCATA----ATATTTATCATCTTATATAGATACAAAAATGAGGAAAAGAAA- --AATATATTTTT-----TATG-----------------TA---AAAA---CTATTTTAACAAAGTGTTCAAATAAAAAG TAGAT-------TTTGACTCAACTCCAT >Bos_taurus TAGTT-ACAAATAAT--------AGGTTTAAGTTCTGGAAATT----AG--------------GTCTTAAAA--TAAA-- -TGCAAA-CTATTTT-----------TTTCAGTTTTATTG---------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------TAATATAATTGAAATACAGCATTGTG-TAAGTTTAAGGTACGCAGCATAATTATTTGGCTTG--CATAT ATTGCGAAATGATTGCCACAATACATTTACTTA----ACATCCTTCATCTCATATAGATGCAAAAAAGAGAAAAA----- --AGTGTTTTTTTCTCCTTGTG-----------------TA---AAAG---TTATTTTACTAGGATGTTCTCTAA-AAAG TAGGT-------TTTTATTTAATG-CAT >Equus_caballus TAGTT-AAGCGCAGTAAATTT--AAATTTAAGTTTTGGAAATTTTTTAG--------------GTATCAAATGGCAAA-- -TAAGGG-CTATTTT---------TTTCCCAGGTTTATTGAGATTGTAGGGGAGGAAGACATTTCCTCTACCTGCTCTGG GTTCTTCTGGGCAGAGAACAAATTAAATTCAAGAGACAGAATAACAGGAGAAAATTAAACAAAGCTTTATAACATGGATA CATGGGAGAGGCTCAGGCAACCTGAGCACTTGCCAAAATGGCTGAAGCCACCACCTTAAATATCATCTTCAGCTAAAGGC AAAGGAGGATGTTGGGGGTGGAGGGGTAGTCAGTCATGGGAGATTACCACACAAGTAAACAAGTGTTAGGTTATTATGCA GACTTGAGTCCTTGCCTTCTGCATTGGTAAGAGTTTCTAGAGATAAGGTCATCACTCCTTCCTGGTACAGAGAGGGTCAC CTTTACCGATGGAGCTTTCCTTTAAAATGTAAATGTCTCTTAACAAAGGGTAAGTAAATTCTACTTTTCAGAATTTCTTT CCTGTCTGCAGTTTTTCAAAAAGTAACCAGCCCCAATTAATCCTCATGCCAAAGAGACTTATCTTGGGGTGGCCAATTCC AGTCCCCCACAAGATCTAATTGACACACAGCACAGTA-TAACTTCAAAGAATACAGCATAATGATTCGACTTA--CATAT ATTGTTAAATGATTACCACAATAAATTTAGTTA----ACATCCATCATCTCATATAGACAGAAAAAAGAGAAAAAGAAAA ATTGGTTTTCTTT-TCCCTGTG-----------------TA---AAAG---CTATTTTAATAAGGTGTTCTCTAG-AATG TAGAA-------TTTGATTTAA---CAT >Tapirus_indicus TAGTT-AAGAGTAGTTAATTT--AAATTCAAGTTCAGGAAATTAGTCAG--------------TTCTCAAATGGTAAA-- -TAAAAG-CTATGTT-----------TCCCAGTTTTGTTG---------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------AGATATAATTGACATACAGCACTGTA-TAAGTTTAA-GTGTACAGCATAATTATCTGACTTA--CATAG GTTGTGAAATGA----------------AGTTA----ACGTCGGTCATCTCATATAGATACAAAAAAGAGAAAAAGAAAA ATAATTTGTTTTT-ACCTTGTG-----------------TA---AAAG---CTATTTTAATAAGGTGTTCTCTAG-AAAG TAGGT-------TTTGATTTAA---CAT >Miniopterus_natalensis CAGTTAAAGAGCAATACATTT--AAATTTAAGTGGGAGAGTTCAATTAG--------------CTCTCAAATGGTAAA-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------TA---ATAG---CTA-TTTAATAAGGTGTTTTCTAG-AGAG GAGGT-------TTTAAC--AG---TAT >Rousettus_aegyptiacus TAATTAAAGTGTAAGAAATTT--AAGTTTAAGTTGAGGAGGTT----AG--------------TTCTCAAGCAGTAAA-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------TA---AAAG---CCATTTTAATAAGGTG------------- --GGT-------TTTAAC--AA---TGT >Condylura_cristata TCAATAAAGAAAAATACATTT--AAAATTAAGTTGGGGAGATTAGCTAGGAGAGTTTAGTTATTTCTTAAA---TAG--- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------TA---ATAG---TTACCTTATTAAGGTGTTTTTGAG-AGAA TAGA--------TTTGATTTAGCAACAT >Erinaceus_europaeus TTGTTCAAGAACAACACATTTTAAAATTGGTGTCAAAGAATTT----TG--------------CTATCAAATGACACA-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------TA---AAGA---CTCTGTTAACAAGATATTTTCCAG-AAAG TGAGTTGATAAGTGTTGCTTATCAACAT >Homo_sapiens TACTC-AAGAGTCATAAATTT--AAATTTAAGTTAA---ACTTA---AGACGGGAAGA-TTGCCTCTTAAATGGTAAA-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------TA---AAAC---CTATTTTAACATGGTGTTTTCTAA-AAAG TAGAT-------TTTGCTTTAA---TAT Horse301_LINE >L1MAB_EC -------------------------------------------------------------------------------- ----------------------------------------------------------------TTTTTTTTTTTCAG-- ------------------------TTTTATTGAGATATAATTGACATATAACATTGTATTATGTTTAAGGTGTACAACAT AATGATTTGAT-ATATGTATATATTGTGAAATGATTACCACAAT-GAAGTTAATTAACACATCCATCACCTCACATAGTT ACAAATTTTTTTTTTGTTTKTGTGATGAGAACTTTTAAGATCTACTCTCTTAGCAACTTTCAAATATACAATACAGTATT ATTA----------ACTATAGTCACCATGCTGTACATTACATCCCCAGAACTTATTCATCTTATAACTGAAAGTTTGTAC CCTTTGACCA----------ACCTCTCCCTATTTCCCCCAC-CCCC-----------CAGCCTCTGGCAACC-ACCAATC TATTCTCTGTTTCTATGAGTTTGGTTTTTTTTTTTTAGATTCCACA---------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------- >Canis_familiaris TTTTTTGTTTTGATATAATTTCAAGCTTACCGGGAAAAATTACAAAG--------------------------------- --------------------------------------TTT----TTTTCCCCACCTCTAAATGATGGATTTACT----- -----------------TTTCTTTTTCTATTGAGGTATAATCGACACACAACATTACATTC------AAGTGTGCAACGT AACGACTCCAC-GTTTGTATATATT-----ATGATCACCACACA------CAGTTA-CACGTTTTTATTCCTTTTTTTTT TCACATTTTTTTTTTCT---TGTGACGAGAGCTTTTAAGACCTACTCTCATAGCAACTTTCACATCTGCAACATGGGATT ATTA----------GCCGTAGTCACCACGCTGTACCTGACATCCTCAGGAGCTACT-ATTGTGTAACTGGAAGTTTGTAC CTTCTGACCCCGTCCCCCAGCCCCCACCC-GTCTCCCCGACCTCCTCACC-------CCTGCTTTGGCAACC-ACCAGCC TGTTCTCTGTATGTGTGAGCTTGGTTTTTCCTAAG--------------GGGAATTCCCATAATACTCTTT---CCC--- ------------------------------------------------------TAGATTCACCAAGTGTTCACATT--- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------TTAACCCACCTGCC-TTATCAAATT >Felis_catus TTTTTCGTTTTGATCTAATTTCAAACCTAC--AGGCAAGTTACAAAA--------------------------CA----- --------------------------------------TTG----TTT---TCATCTCCAGGTGATGGATTTATTCAGTC AGCTACTTTT----------CTTTTCTTATTGAGGTATAACTGACATACAACATTATATTC-ATTTCAGGTGTACAACAT AATGACTCCAC-ATGTGTATATATTACGAAATGATCACCCCAGT-AGGTCTGATTA--GCACTCATCACTACACATAGGT CCA-----CCTTCCTTT---TCTTATGAGAATTTTTAAGATCTACTCTCTTAGCAACTTTCAAATATGCAACACAGTATT CTTA----------ACCATAGTCACCATGCTGTACATTACATCCTCGTGCCTTACTTATTTTGTAACTGGAGGTTTGTAC CTTTTGACCC----------CCTTCACCC-ATTTCACTTACTTCCCCACCCCCTACCCCACCTTTGGCAACCAACCAATC TGTTCCCTGTATGTACGAGCTTGGTTTTTCCTATG--------------AGGAATTCCCATAATGCTCTTT---ACC--- ------------------------------------------------------TAGAGTCAGCAACTGTTTACATT--- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------TTAACCCATCTGCC-TTATCAATTT >Manis_javanica TTTTTTGTTTTGGTATCATTTCAAACTTAC--AGAAAAGTTGCAAAAATAGTACA---AGGAATTCCCAGACACAC---- --------------------------------------TTT---TTTTTCTTCATCTCTAGGTGATGGATTTGTTCCATC AACAAATTTTTTTTTTA-----------ATTGAGGCGTAAATGACATACAGCATTGTATTT-GCTTCAAGGGTATGACCT AATGATTCAGT-ATTTGTATATATTACAAAATGATCACCACAGTCAAGTCTAGTTA--ACACCCATCACCATACATAGTT ACAAA----TTTTTTCT---TCTGATGAGAACTTTAAAGATCTACTCTCTTAGCAACTTTCAAATATGCAATACAGTATT AACACTGTATAAATATTATAGTCACCATGCTGTATA-CACATCTTCATGACTTGTTTACTCTATAACCAGTAATCTGTAC CTTTTGACCC----------CCTTCACCA-ATTTTGCCAACCCC-------------ACACCCCTGGT-ACC-ACCAGTC TGTTCTCTGTATCTCTGAGCTCAGTTTTTCCTG----------------AGGAATTCCCAT-ATACTCT-----ACC--- ------------------------------------------------------TGGATTCACCCAAGTTT---GTT--- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------TTAATCCACTTGAC-TTATCAATTT >Sus_scrofa TT----ATTTTGTTATAACTTCGAATGTGC--AGAGAAGTTGCAAAAAGAGTACA---AGGAATTCCCACATACTGTTTT TTGGTTCGTCTCTCTCTCTCTCTCTCTTTCTCTCTCGCTTT----CTCTCTCTCTCTCTCTGTGATAGGTTTATTCCAT- ---TATTTTCATTTTCTTC-CTTTTTAAGTTGAGGTAAAACTGACAT-----GTTATCCTA-GGTTCAGGTGTGCAATAT AATTATTCAATAATATGTCTATATTACAAAAGGATCACCACAAT-AAGCC---ATA--ACATCCATCACCACACACCGTT ACAAAAAAG--TTTTCT---TGTGGTGAGACATGTTCAAAT---CTTTCTCAGCAACTTCCAGCTCTGCAATAGAGCGTT ATTA----------ACTACAGTCGCTGTGCTATATAGCACAGCCTCATGACTTATTTATTTTATGACTGGAAGTTTGTAT TTTTGGGCCC----------C---------ATTTCACCCAC-CACCCACCC------TCGCCTCTGGT-ACC-ACCGATC TGGTCTTTGAATATAAGGGTTCCGTCTTTTCTATG--------------AGGAATTGCCAT-ATACTTTTT---ACCTTG GTTCGCCAACTTTTTTTATTTTTTATTACTGTTGATTTACAATGTTCCGTCCATTTGATTCACCAACCATTTACATT--- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------TCAACCCATTTGAC-TTATCAATTT >Tursiops_truncatus TT----GTTTTGATATAGTTTCAAACTTAC--AGAAAAGTTGCAAAACTAGTACA---AGGAATTCCCATATACTC---- --------------------------------------TTT----TTTAAAAAATCTCTATGTGATGGGTTTATTCAGTC AGCTACTTTCATTTTCTTC--TTTTTAAAATGAGGTATAATTGACAT-----ATTGTATTA-GTTTCAGGTGTACAATAT AACGATTC---------------------------------AGT-AAGTCTAGTTA--ACATCCATCACCACAC--AGTT GCAAACATTTTTTTTCT---TGTGGTGAGAACTTTCAAGATCTACTTTCTTAGCAACTTTCAAATATGCAATACAGTATT ATTA----------ACTGTGGTCACTACGCTGTACATCACCTCCTCATGACGTATTTATTTTATCACTGGAAGTTGGTAC TTGGTGACCC-----------CTTCACGC-ATTTTGCCCAG-CCCCCATCCCTGCTTCTGCCTCTGGC-ACC-ACCAGTT TGTTCTCTGAATATATGAGTTCAGTTTTTCCTGTG--------------AAGAATTGCCGT-ATACTCTTT---ACC--- ------------------------------------------------------TAGATTCACCAGCTGTTTACATT--- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------TTAACCCATTTGAC-TTATCAATTT >Equus_caballus TTTTTGGTTCTGATATAATTTCAGACTCAC--AGAAAGGTTGCAAAAATGCTACA---ATGAATTCCCGTATACTC---- --------------------------------------TTT----T------CATCTCTAGGTGATGGGTTTATTCAGTT GGCTACTTTTGCTTTCTTCTTTTTTTTTACTGAGGTATAATTAACATACAACATTATATTA-GTGTCAGGTGTACAACAT AATGATTCTAT-ATTTGTATATATTATGAAATGGTCACCACAAG-AAGTCTACTTA--ACATCCATCACCACACAGAG-T ACAAAA--TTTTTTTCT---TGTGATGAGCACGTTTAAGATCTACTCTCTTAGCAACTTT-AAATATGCCATACGGTATT ATTA----------ACTATAGTCACCATGCTGTACGTTACATCCTCATGCTTTATTTATTTTGTAACTGGAAGTTTGTAC CTTTTGACCC----------TCTTCAGCC-ATTTCGCCTATCCCCCCACCC------CCATCTCTGGCAACC-ACCAGTC TGTTCTCTATATCTATGGGCTTGGTTTTTCCTATG--------------AGGAATTCCCAT-ATACTCTTT---AGC--- ------------------------------------------------------TGGACTCACCAAGTGTTTACATT--- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------TTAACCCATTTGCC-TTATCAATTT >Ceratotherium_simum TTTTTTGTTTTGATATAATTTCAAACTTAT--AGAAAAGTTGCAAAAATAGTACA---AGGAATTCCCATACACTC---- --------------------------------------TTT----TTT---TCATCTCAAGGTGATGGGTTTATTCAGTC TGCTACTTTTGTTTTCTTC-TTTTTTTTACTGAGCTATAATTGACAT---TCATTGTATTA-GTTTCAGGTGTACAATAT AATGATTCTAT-ATTTGTATATATTACAAAATGGTCACCATAAT-AAGTCTAGTTA--ACATCCATTACCACACATAGCT ACAAA-ATTTTTTTTCT---TGTGATGAGAACTTTTAAGGTCTACTCTCTTGGCAACTTTCAAATATGCAGTACAGTATT GTTA----------ACTGTAGTCACCATGCTGTACGTTACAGCCCCAGGACTTATTTATTTTATAACTGGAAGTTTGTAC CTTTTGACCC-----------CTTCACCC-ATTTCGCCCA--TCCCCACCCC-----CCACCTCTGGCAACC-ACCAGTC TGTTCTCTGTATCTATGAGCTCAGTTTTTCCTATG--------------AGGAATTCCCAT-ATACTCTTT---ACC--- ------------------------------------------------------TAGATTCACCAACTGTTTACATT--- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------TTAACCCATTTGCC-TTATCAATTT >Miniopterus_natalensis TATTTTGTTTTGAAATAATTTCAAACTTAC--AGAAAAGTTGCAAAACTAGTACA---AGGAATTGCCATATACAC---- --------------------------------------TTT--------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------ACC--- ------------------------------------------------------TAGATTCACCGACTATTCACATT--- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------TTAACCCATTTGCCTTTATCAATTT >Rousettus_aegyptiacus TTTTTTGTTTTGAAAAAATGTGAAACTTAC--AGAAAATTTGCAAAGCTAGTACA---AGGAATTGCCATATGCTC---- --------------------------------------TTT--------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------ACC--- ------------------------------------------------------TAGACTCACCGACAGATCACATT--- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------TTAACCCATTTGCC-TCATCCATTT >Condylura_cristata TTTTATGTTCTGTC---TTCTCAGCCCTTT--AGAGAGGTTGCAAAGATAGCACA---AGCCGTTCCCGTGTACGC---- --------------------------------------TTT--------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------CCC--- ------------------------------------------------------CACATTCACC-CCTGCTCACTTG--- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------GGAACCCATTTGCC-ATAGCCATTT >Erinaceus_europaeus TGTTTTCTTTTGAT---ATTTCAAATTTAT--AGAAAGGCTACAAAAAATAGTCA---AAGGATTCCTATATTCTC---- --------------------------------------TTA--------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------ACC--- ------------------------------------------------------TATATTCATCAACTACTCACAAGTTA TTTACTTTTTAAAGATGTATTTATTTCATCTGAGATGAGAGACAGAGAGATAGAGGTAGAGATAGAGAGATGCCTGGTAC AAGGGACACCAAGAGCCTCAGGCATGAAAGTTTTATGTTCTACCAGATGGCCAATATTCACATTTTAAAAAATATATTAT TTTTTTAATTTAATGAGAGAGAGAGAGAGAAAGAGAGAGAGATGGAGAGAGACCAGACTACTCTCAACTCTGGTTTATGG TGGTGCTTGGTATTGAACCTGGGACTTTTGAGACTCTAGCATCAAAGTCTTTTGCATAACCATTATGCTGCCTCCCTAGC CCCATATTTGCATTTTAAATCA-TTATC-TTATCACTTT >Homo_sapiens ATTTTTTTAAAATCATAATTTCAAACTTAC--AGAAGAGTTGCAAAAGTAGGACA---AGTAATTCCTATATCCTT---- --------------------------------------TTC--------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------AC---- ------------------------------------------------------TTGATTCACCAACAGCTTACATT--- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------TTCACCCATTTGCT-TTGTTATTCT Mole2_LTR >ERV54-EC_LTR ----------------------------------------------------------------TGTTAAAAAACAAAAT TCAACTGAGTAAATTTTAAAGATCTTATTGGCTTTATTCAATGATTCATGAATTGGGCAGCATCCAATCTAGC----AGA TAGAAAGGAGCTCCGAGGAGCTGTAC-AAAAT--------GAAAGACTTTTATAGGCAGAAGGGAGCAGGAACAAGGAAG TTAT-ACTAGGCAAAAAAGTG-GATTGGTTATTGCAAGGTTACTTTCCTT-TAGGGGATGGCAGGGGTCTATCAGGCAGA TTACCTAACTAGTGCTGATCAGGTGATTCCTGATTGACTGGTTTAAGATTCCATTTCTGGGAGAGCCGAAACTGTAATTA AGTTAAGTCTCGGTTTGGTGACGTGGGGCTTAGCATAAGTGACTCCATTTTGGGCCTGTTGTCTTGTTTTTAACA----- ------------------------------------------------------------- >Canis_familiaris CTACGGTTTCCTAG-TAAGCCCAATGACATAACGTTTCATATATGATGATATAT---AATA---TGTTAAAAAACAAAAT ACAGCTGAGTACATTTTAAAGGTCTTATTGGCTTTATTCAGCAATTCACTAATTGGGCAGCATCCAATCTAGT----AGA TAGATAGGAGCGCCAGGGAACTACTC-AAGGC--------AAGAGA-TTTGGTAGGCAGGTGGAGGCAGGAACAAGGAAG CTGTAATGAGGCGGA--AGTG-AGTTAGTTATTTCAAGGTTACTTTCCCTAGAGAGGATAGCAGGGGTTTCTCAGGCAAA -CACTTACCTGATGCTCATCAGGTGATTCCTGAT----TAGCTTAAGATTCCATTTCTGAGAGACCCGAAG-TGTAATTA AGTGAGATCTCAGTTTGGTGACATGGGGCTTAGAATAAGCTACTCAATTTAGGGCTTGTTGCCTTCTTTTTAACA---AA TA---TTATCTCATATAAAGCTGGTGTTATCATTACTTCCGCTTTTACTCTGGAAGAGACT >Felis_catus CTATGCTCTTCCTA-TAAGACCTATGACATGATGTTTCAAATATGAT--------------------------------- -------------------AAGACTTATTGGTTTTAGTGAGCAATTCATGAATCAGGCAGCATCCAATCTAGC----AGA TAGATAGGAGGTCCAAAGAGCTCTAC-AAGGC--------AAGAGA-TTTGGTAGTCAGAAGGAAGCAGGAACAAGGAAG CTGT-GCTAAG--GGGAAGTG-AATTGGTTATTTCAAGGTTACTTTCCATAGAGAGGATGCCAGGGGTTTCTCAGGCAAA -CACCTACCTAATGCTGATCAAGCGATTTCTGGTTGTCTGGCTTAAGATTCTATTTCCGTGAGACCCCAAACTGTAATTA AGTTACATCTTGGTTT-GTGACATGGGGCTTAGCATAAGCTACTCAGTTTAGGGCCTGTTGTCTTATTTTTAACA---AA ------TATCTCATATAAAGCTGATGTTATTATTATCTCCATTTTTACTGTTGAAGAGACT >Manis_javanica CTATGCTTTCCTAATTAAGAGCTATGATAGAATGTTTCAAATA-AATGATATGT---AATC---TATCAGAAAACAAAAT TTAACTGAGTAAATTTTAAAGATTTTACTGGCTTTTCCCAGTATTTTACAGACGGGGCAGCATCCAGTCTACCCAAGAGG TAGGAAGGAACTCCAGGGAGTCACACAAAGGC--------AAGCGA-TTTTGCAGGCAGAAGGCGACAGGAACAAGG-AG CTGC-ACCAGGCTAAAAAGCA-GATTGGTGATTGCC-GGTCACTTTCCCTAGAGCGGGTGGCCGGGGCTTATCAGGCATG -GACCTAACTAATGCTGATCAAATGATGCCCAATTCACTGGTTTAAGATTCTGTTTCTGGGAGACCCAAAATCGTAGTC- ATTTAAGTCTTGGTTTAGTGACATGGGTTTTAGGATAAGAGACTGCATTGGAGGCCTATTG-----TTTTTAACA---AA TA---CTATCTCATACAAAGCATAAGTTTTCATTAGCTCCATTTTTACTGTTGAAGAGACT >Condylura_cristata TTATGCTCTA-----TAAGAGCCATGACATAATGTATAAACTATAATGATATGT---AATA---TATT-GAAATCTAAAT TCAACTGAGTTT-------AAGCATTATTGGCTTTATTTAGTCATTCATGGCTTGGATAACATCCAACCTAAA--AGAGA TAGAAGGGAGCTCAGAAGAGCTTTACAAGGGAAGGGGTGGAAGGGATTGTTATTGGCAAATGGAA--AGGAACAAGAAAG TTAT-ATGAGACAAACTAGT----TTGACTAATGCAGGGTTACTTTCCCTAGAGGAGATGGTAGAGGGGTGTCAGGCAGA TGATTTAAACCATGTTGATCAGGTGATTCTTGGTTGACTGTTTTAAAATTCCATTTATGGTA-ACCCAAAACTGTTATCA AGA------ATAACTTGGTGACTTGGGGCTTAGAATTAACAACTTCATTTTGGAAAATGTGCC-TATTTTTAACA---AA TA---TTATCTTATACAAAATTAGTGCTGTTATTATTTCTATTTTAACTATTAAAGAGAAT >Scalopus_aquaticus TTATGCTCTCTTTA-TAAGAGCCATGGCATAATGTATCAACTATAATGATATAT---AATA---TGTT-GAAACTCAAAT TCAACTGAGTATATTTTAAGCATTTTATTGGCTTTATTCAGTCATTCATGACTTGGATAGCATCCAATCTAGG----AGA CAGAAAGAAGCTCAGAAGAGTTTTAC-AAGGC--------AAGAGATTTTTCTTGGCAGAAGGGAAAAGGAATGAGAAAG TGAT-ATGAGACAAAACAATATGTTTGACTACTGCAGGGCGAATTTCCCTAAAGGAGATGGTAGGGGATTGTCAGGCAGA CTACTTAAATAATGTTGATCAGGTGATTCTTGATTGACTGGTTTAGGATTCCATTTCTGGGTTACTCAAAAC-----TTA AGT------TTAACTTGGTGACTTGGGGCTTAGAACAATCAACTTCATTTTGGGAAATGTGCC-TATTTTTAACA---AA TA---TTATCTCATACAAAAT-AGTGCTGTTATTATCTCTATTTTTACTGTTGTAGAGAAT >Sus_scrofa CTTTGCTCTCCTCC-TAAGAGCTATA----------TCAAATATAATGGTATAT-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AA TA---GTATCTCATGTGAAGCTGATGCTATGGTTATCTCCATTGTTACTATTGAAGAGTCT >Tursiops_truncatus CTCT--TTTCCTAC-TAAGAGCTATAACGTAAGGTATCAAATATAATGCTATGT-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AA TA---TTAGCTCATATAAAGCTGATACTCTTGTTATCTCCATTTTTACTGTTGAAGAGACT >Equus_caballus CTTTCCTCTCTTAA-TAAGAGCTATAACATAATGTATCAAATATAATGATATAT-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AC TA---TTATCTTATATAAAGCTGATGCTATTATTATCTCCATTTTTACTATTGAAGAAGCT >Ceratotherium_simum CTTTGCTCTCTTAA-TAAGAGCTATAACATAATGTATCAAATATAATTATATAT-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AA TA---TTATCTCATATAAATCTGATGCTGTTATTATCTCAATTTTTAGTATTGAAGAGATT >Myotis_myotis CTTTAATCTCCTAA-TAAGAGCTATAACATAATGCTTCAATTGTAATGATGTAT-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AA TA---TTATCTCATATAAAATTGAAGCTATTATTATCTCCATT-TTACTATTAAAGAGACT >Rhinolophus_ferrumequinum CTTTGATCTCCTAA-TAAGAGCTATAACATAATGTTTCAAATATAATGATATTTG------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------AA TA---TTATCTCATATAAAGCCAATTCTATTATTATCTCCATT-TTACTATTGAAGAGACG >Homo_sapiens TTTTGCTCTCCTAA-TTAGAGCTATAGCACAATATGTCAA-TATAAT----CAT-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------------------------TA TA---TTATCTCATATAAAG-----ATTATAATGATCTTCATTTTTACTACTAAAGA--CT Mole3_LTR >MLT1A -------------------------------------------------------------------------------- -----TGTCTTAGTCTGTTCGGGCTGCTATAACAAAATACCATAGACTGGGTAGCTTAAACAACAGAAATTTATTTCTCA CAGTTCTGGAGGCTGGG-AAGTCCAAGATCAAGGCGCCGGCAGATTCAGTTTCT-----GGTGAGGGCTCATTCCCTG-- ---------GTTCGTAGACGGC-GCCTTCTCACTGTGTCCTCACATGGCGGAAGGGGCAAGGGAGCTCTCTGRGGTCTCT TTTATAAGGGCACTAATCCCATTATGAGGGCC-----CCGCCCTCATGACCTCATCTAATCCTAATCACCTCCCAAAGGC CCCACCTCCTAATACCATCACATTGGGGATTAGGGCTTCAACATATGAATTTTGGGGGGACACAAACATTCAGTCCATAG CA--------------------------------------------------------------- >Myotis_myotis GTTCTCACGCA-CAGGAACGTAGGGGT----------GGCAGGTGGAA--ATGGG----GGATGTG-GCAA--GG---CA CG---TGTCTTAGTCAGTGTAGGCTGCTTAAACAAAATGCCATAGACTGAGTGGCTTAGACAACAAGCATTTACTTCTCA CAGGTCTGGGGGCTGC--AAGTCCAAGGTCAAGGTGCTGTCTGCCTTGGTTCCT-----GGTGAGAGTTCACGTCCTG-- ---------GTTTGCAGGTGGCCACCACCTCACTGTGTCCTCACATGGTGGAGGAAGA-------------------CAC TATATAGGGACACTGATTCCATCATGGGGACC-----CCACCCTCATGACCTCATCTAAATCT----------------- -CCATCTCCAAATGCCATCACCTT------------------------------------------------------AG CAA---C-CT----G-GTGGTGCCTGCCACTCAGTCACAATGGCTGGCTCCTCATTCTGTCTCTG >Rousettus_aegyptiacus GTCCTCAAGCA-CGGGAATGGCGGGTT----------GGCAGATGGAA--ATGGG----GGATGTG-TCAA--AG---CA CT---CATCTCAGTCCGTTTAGGCTGCCATAATAAAATGCCATGGACTGAGAGGCTTAGACAACAAACATTTGTTTCTCA CAGTTCTGGGGGCTGG--AAGTCCAAGAT---GGTGCTTTTCAATTTGGTTCCT-----GGTAAAAGCCCAGTTCCTG-- ---------GTTTACAGATGGCCTCTTCCTCAC------------TGGTGGAGAGAG--AGTGAGTTTCCT------CTC CTTATAAGGATACAAATCTCATCATGGGGGCT-----CTACCTGCAGGACTTCATCTAAATCTAATTACCTCCCAGAGAC CTCGTCTTCAAATACTATCACATTGGGCATTAAGCCTTCAACGT--GAATTTTAGAGGGACACAAACATTCAGTCCTTGA CAA---CATT----G-GTGGTATCTGTCACTAAGTC-----------------ATTCTGTCTCTG >Condylura_cristata ATCCTCAAACA-CAGCAAGCTAGCAGT---------TGGCAGATGGAA--ATGGGAGCAGGGTGTGTGCAATGAG---CA CT---TGTCTTAGTCAGTTAAGGCTG-TTTAATAAAATGCCAGACACT-AGTACTTCACACAACAAACATTTACCTCCCA CAG-TGTAAAGGTTGGG-AAGCCAAGGATCCAGCCGCTGGGAGTCAGGGGTCT------GGCAAGCACCCACTTCCTGCC ATGTTTGAGAGTTGCAAGTAACTTCCTTTTCACAGTGTCCTCACACAGCAAAGAGAG--------TCTCTT-----CCTT CTTGTCGAGGCTTTGAGTCCATGGCTATGGCC-----CCACCTGCATGAGCCATTATCCTTCT-------------AGAC TCCATTTCCAAATAGCACTGCTTTGGGTATCAGGACTTTAACATACGAAGTTGGGGGAGGCAC-AGCATTCAGTCCCTTA CAA---CACT----A----TCATCTGTCCCTGTGTCCTAACAGCTGGCATCTCATCCTCTCTCTG >Sorex_araneus ATCTGTAAGCATAAGGCAT--AGGTGT---------TGGCAGACAGAG--ATGGG---GCAGTGTA-GCAA--GG---CA CT---TGTTTTA----GTTTAGGTTA-TTTGTTGCAAAGCCATATATTGGGAATTGTA---------CATTT--CCCCCA TAGTTGTTGAGATTGGGAAAATCTAAGATCAAATTTCTGATAGACTGGCTACCCATCTGAACATGAGCCCACTCCTTACC ATGCTTTGCATTTGTAGACAGCCTCCTTACTAT----------CTGGGTAGAAAGTGAAAATGAGTCTCTT------TTA CGTCTAAGAATTCCAGTGCCATCATGGATACTTCCTACTGCCTCTGTGATCTCACCAAAATATGATAAGTTCCCAAGGTC CC--TCGCAAAATGTTGTCATGCTGGGTGTTATAGCTTCAACATATGAAATTTGGAGAAACACAAGTAGACAGTTCATAA CAA---CACT----G------AGCTGTCACTATATCATAACAGCTAACTCCTATTTCTTTTCATC >Canis_familiaris GTCTTCAAGCA-CAGCGATATAAGAGC---------TGGCAGCTGGAA--ATGGA----AGACCTG-GGAA--GT---CC CT------------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------G-GTGGCATCTGTCACCATGTCACAACAACTGGCTTTTCATCCTGTCTCTA >Felis_catus ATCCTCGAACA-CAGGAATGCAAGGGT---------TTGCAGATGGAA--ATGGA----AGATGTG-GCAA--AG---CA CT------------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------G-GTGGCATCTGTCACCGTGTCGCAACAACTGGCTCCTCAACCTGTCTCTA >Manis_javanica GTCCTCCAGCA-CAGGGATGCA----------------------GGAA--ATAGG----GGATGTG-GCAA--GG---CA CA------------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------GAATGCTGTCTGTCATCATGTCACAG---CTGGTTCCTCATTCTGTCTCTG >Sus_scrofa GTTCTCAAGCA-CAGGGATGTAGGGTT---------TGGAACTTGGAA--ACGGG----AGATGTG-GCAA--GC---CA CT------------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------T-GTGTGATCTGTCACCAGGTCACAA---CTGACTCCTCATTTTGTCCCCA >Bos_taurus GTTCTCAAGCA-CAGGGATGTAGGGGT---------TGGTGGCTGGAA--ATGGG----GGGTATG-GCAA--GG---CA CC------------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------A-GTGG-ATCTATCACCATGCCACAA---CTGGCTCCTCATCTTGCCCCCA >Equus_caballus GTCCTCAAGCACCAGGGATGTAGAGGT---------CGGCAGTTAGAA--ATGGG----GGATGTG-GCAA--GG---CA CT------------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------G-GTGGAATCTGCCACCATGTCACAACAACTGGCTCTTCATCCTGTCTCTG >Ceratotherium_simum GTCCTAAAGCACCAGAGATGTATGGGTGTAGTAGGGACATAGTTAGAA--ATGGG----GGATGTG-GCAA--GG---CA CT------------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------G-GTGGTATCTGCCACCACGTCACAACAACTGGCTCTTCATCCTGTCTCTG >Mus_musculus ATCCTCAAGCA-CAGAAATGGAGAGTTCT-------GTGCACTGGGAAGCATGGA---------TG-ACTG--GA---CG CT------------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------G-GCAGTACCTGCTACTGTGCC-------CTACCTCGCCCTCCTGTCAAAG Mole23_LINE >L1MA9_3END ---------------------------------------------------------------GGATGAATAAGTTCTGG AGATCTAAT--GTACAGCATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTT AAGTGTTCTCACCACACACAAAAAAA--TGGTAACTATGTGAGGTGATGGATAT--GTTAATTAGCTTG-ATTGTGGTAA TCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACC TCAATAAAGCTGGAAAAA-------------------------------------------------------------- ---------- >Sus_scrofa AATGTTTGGCATAATACTTTACAGGACTTTAAATACTATTTTCT--AAATT---TAAAAT------------AGTCCTGA AGATGTAAC--ATATCACATAGTGACTATAGTTAACAGTACGGTATTGTATATTTAAAAGTTGCTAAGAAAGGGATTCTT AAAAGTTATCATCACAAGAAAAATAA-TTTGTACCTACATGTGATAATGGAT----GTTAACTAGACTTAATTGCAGTAA TCATCTCACAGTATATACCAATATAGAATCATTATGCTGTACACCCTACTAATACGA---TGTTGTATGGCAATTATATC TCAA-----------------T--AAAAAGAT---TTG-AAAGT----AAACTTACAAAGGAGGCAG-AGGCAGTTCCTG GT--TATGAA >Bos_taurus AATGTTTGGTACAATGCCTTACATGATCTTAAATAATATTCTCTAAAAATT---TAAAAG------------AGTCCTGG GTGTGTAAT--ATACAGCATGGTGACTATAGTTAATAATACTATATTGTACATTTAAAGGTTGTTAAGAGAGATGATTTT AAAAATTCTCATTGTAAGAAAAACAGTTTTGTAACTGTGTCTGGTGATGGGTGTTAGTTAACTAGACTT-ACTGT-GTGA TCATTTCACAATGCATACCAATATGGAATCATTATGTTGTAAACCTGAGTGATATAA---TGTTACATGTCAATTATATC TCAA-----------------TAAAAAAAGGT---TTT-AAAGTAGAGAAGCTGAAAAGGGAAGCAG-ATGTAGTTCCTG GT--TATGAA >Condylura_cristata GATCTTTGGCGCTCTGCCTTACAAGGGCTGAGACAATCTTTTTCTAAAGTT---TAACGT------------GGGACATG GGGAGAGGTTACTGTAGTAGGGTGGCCATAGTCAATGATACTGTATCTCACATTTGAA----------------GTGGCT AAGAGCTTAGATCACAAAGGAAAGAATT---TAACTATAT----------------GTTAACTAAATTT-ATTGTGGTG- TAATTTCACAGCCTACACAATTATCAAATCATTATGTTGAAC------CAAATACAG---TGATACATGTCAATTATATC TCA------------------T----AAAATT---TGT-TGAATGGAGAAACTTAGAAGGGAAGAAG-ATGCAGTTCCTC TTAATATAAA >Sorex_araneus AATGTTTGGCACAACGCCTTGTAGGAGCTTAAATAATGTTTTCTTAAAACT---TAAAAT-------------------- ---------------AGCATGATGACTATAGGTAGTAACA--GTATGGTGTATTTGAAAACAGCTAAGAAAGTAGATCTC TAGAGTTCT---CACAAGAGAAAACAACTTATAGCCATATGTGGTCATGGAT----GTTAACAAGATTT-AATGTGGCAA GAATTTCAC-------------ATTAAATCATTATGCGGCACACCT-ATGTCTAGAA---CACTATTTGTCAATTACATC TCAA-----------------CGTTTTTTTTT---CCTTTAAATAGAGAAACATACAAAGCAAGAGG-ATGCAGTTCCTG GT--TATAAA >Canis_familiaris AATGTTGGGCACGGTGCCTTACGGAAGCATAAATAATATTTTCTTAAGGAC----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------TAA-----AAT---GT----AACAGAGAAACTTACAAGGGAAGAGGAATGCAGCTCCTC AT--TAGGAA >Felis_catus AACGTTGGGCATGGTGCCTTATGGGAACTC----AATATTTTCTTAAGGAT----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------CAA-----AAT---TT--AAAATACAGAAACTTACAAGGGAAGAGGAAAGCAGTTCCTA GT--TATGAA >Manis_pentadactyla AATATTTGGCACAATGCCTTAGGGAAGCTTAAGT---ATTTTCTTAAGGGC----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------TAA-----AAT---TT--AAAATAGAGAAACTTACAAGGGAAGAGC-ATGCAGTTCCTA GT--TATGAA >Equus_caballus GAAGTTTGGCACAATGCCTTATGGGATCTTAAATAATATTTTCCTAAGGGC----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------TAA-----AAT---TT--AACATAGAGAAACTTACAAGGGAAGAAG-ATGCAGCTCCTA GT--CACGAA >Ceratotherium_simum AATGTTTGGCACAGTGCCTTATGCGAGCTAAAATAAAAATTTCCTAAGGGC----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------TAA-----AAT---GT--AAAACAGAGAAACTTACAAGGAAAGGGG-TTGCAGCTCCTA GT--CATGAA >Myotis_myotis AATGCTTGGCACAGTGCTTTATGGGTGCTTAAATTATATCTTCTCAAGGGC----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------TAA-----AAT---TT--AAAACAAAGAAACTTACAGAGGGAGAGG-ATATGGTTCCTG GT--TATGAA >Rousettus_aegyptiacus AGTATTTGGCATGATGCCTTATGGGAGCTCAAATAATATTTTCTTAAGGGC----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------TAA-----AAT---TT--AAAACAGAGAAACTTACAAAAGGAGAAG-ATACAGTTCCAG GT--TATGAA >Homo_sapiens GATGTTTGGCACAATGCTTTATAGGAGCATAAA-AATATTGTCCTAAGGGT----------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------TAA-----GAT---TT--TAAATAGAGAAACTTATAGGGAAAGAGG-ATGCAGTTCCTG GT--TATGAA Mole44_LINE >L1MA9_3END -------------------------------------------------------------------------TTTTTCC AGCTTTAT----TGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATATACGTA TACA----TTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTACC--ATTTTTTTGTG TGTGGTGAGAACACTTAAGATCTA-------------------------------------------------------- ------------------------ >Myotis_myotis TGACGGGGTCTAAAAGAATCAACAGAGTATCATTGAAACCACAACATATG---TAAAGTTTTT-GTTTTTTTTAAATTTC AGCTCCAT----CAAGGTGTAATTGACATACAAAATTGTAAGATATTGTAAGTATATATTGTGGTGATTTAACATATGTA TATG----TTGTGAAA-GATTCCTGACATCTGGTTAATTAAAACATCAATCACCTCACATA----------TTGTTTGTG TGAG-----------------------TTAAGATGTATTTTTC-AGTTACAT---CTTTTTAAGAAAATTTAATCCTTGA AATAGAGTAAAATGCAATAAAATG >Rousettus_aegyptiacus TGACAGGTTCTAGAAGAATCAACAGAGTATCATTTAAACCACTAAAGATC---TAAAAACATT---ATTTT-TTAATTTA AGCTTTAT----TGAGGTATAATTAACATATAAAATTAGAAGATATTTAAAGCATATATTGTGGTGATTTGATATATAGA CATA----TGGTGAAAGGAGTCCTGACATCTAGTAAATTAACACATCCATCATCTCACATATTTATCTTTCTTTTTTTTT TTTGGTGAG------------------TAAAGAGATATTTTT--AGTTACAT---CTTTTTAATGAAATCTAATCCCTCA AATG-----AAATGCAATAAAATG >Condylura_cristata CGACAGGTTCTAGAAGAATCAACAGAGGGTCATTTAAACCACTAAGTACA---TAATAGTTTA---TTTTT---AATATC AGCCTTAA----TGAGGCATAATTGATATATAAATTTTTAAGATATTTAAGGTATAAATT-----GATTTCATATAAATA TAAA----TTGTAAAGGAGTTCCTGTA--TCGATTTATTAATACACTCCTCACCTCATTTATTTACC----TTTTTTCCC CTTGGTGAG------------------TAACAAGGTATTTTTTAAATTATAT---CTTTTTAGTGAAATCTAATCCCTAA AATAT---------------AATG >Solenodon_paradoxus TGACAGGTTCTAAAAGAATCAAAAGAGGATCATTTAAAGCACTAAACATT---TAAAGAGAACTTTTTTTTTTTTAATTC AACTTTTT----TGAAGTATAATAGACTGTTAAAATGTTAAGATACTTCAAGTGTCCATCATGGTGATTTGATCTATGTA TGTATACATTGTGAAGAGTTCTCTCTCATCTAGTTAATTAACAC----CTCAC-----AGATTTATCTTTTTCATTATTG AGTA-----------------------AAGAGAGATATTTTTAATGCTGCTA-----------GAAAGTTTAATTCCACA GANNNNNNNNNNNNNNNNNNNNNN >Canis_familiaris TGACAGGCTCTAGAAGAATCAACAAAGTGTCATTGAAACTACTAAATATT---TAAAAGTGTT---TCTAT--------- AGTTGTAT------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------CTTTGTAATGAAATCTAACCCCTAA AATACAGTAAAATGCAATAAAATG >Felis_catus TGACGGGTTCTAGAAGAATCAACAAAATATCATTGAAACCACTAAATATT---TAAAGAGGTA---TTTTT-------TT AGTTTTAT------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------CTTTGTAATGAAATCTAACCCCTAA AATATAGTA------AATAAAATG >Manis_pentadactyla TGACAGGTTCTGGAAGAATCAACAAAACATCATTTAAACCACTAAATACA---TAAAGAGGCA---TTTTT-------TT AGTTGCAT------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------CCTTTTCATGAAATCTAATCTCTGA GATATCGTAAAATGCAATAAAATG >Sus_scrofa CGACAGGTTCTAAAAGAATCAATAGGATATCATTCGAAACATTAATTATT---TAAAGACATA---TTTTT-------TC ATTTGTAT------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------CCTTTAAATGAAATCTAATCCCTGA AATATAGCAAAATGCAATGAAAGG >Bos_taurus TGACGGGTTCTAAAAGAATCAACAGAGTATCACTGGAAACAGTAAATATT---TAAGGAGGGA---TTTTTTT---TTTC AGTTGTAT------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------CCCTTTAATGAAATCTAATCCCTCA AATATAGTAAAAGGCAATGAAATC >Equus_caballus TGACAGGTTCTAGAAGAATCAACAGAGTATCGCTTAAACCACTAAATGTT---TAAACAGATA---TTTTT-----TCTT AGTTGTAT------------------------------------------------------------------------ -------------------------------------------------------------------------------- --------------------------------------------------------TCTTTAATGAAATCTAATCCCTAA AATACAGTAAAATGTAATAAAATG >Ceratotherium_simum TGACAGGTTCTAGAAGAATCAACAGAGTATCATTTAAGCCACTAAATATT---TAAACAGGTA---TTTTT-------TT AGTTGTAT------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------CCTTTTAATGAAATCTAATTCCTGA AATATAGTAAAATGTAATAACATG >Homo_sapiens TGACGGGTTCTAGAAGAATCAACAGAGTATCATTTAAACCACTAAATGTT---T--ACA-----------------TTTT AGTTATGT------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------CCCTTTAATGAAATCTATTCCTTGA AATAGAGTAAAATGCAAAAAAATC Mole64_LINE >L1MA9_3END -------------------------------------------------------------------------------- -----------TTTTTCCAGCTTTATTGA----------GGTATAATTGACAAATAAAAATTGTA---TATATTTAAGGT GTACAACGTGATGTTTTGATA---TACGTATACATTGT---GAAATGA-TTACCACAATCAAGCTAATTAACATATCCAT CACCTCACATAGTTACCATTTTTTTGTGTGTGGTG--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------ >Equus_caballus AATTTGCTTAAGATGACAAAGCAAGGAGGTAGTGCAGCCAGACATCAAACCCAC--AATCTGA---TTCGAAGTTTA--- -TTTTCTT---TTTTTA-------ATTGAAGAATAATTGGGAATAATTGACAAAT-ATAATTGTATACTATATTTAAAGT GTATAATGTAATGATTGGATCAG-TATATACGCATGGT---GGAATGA-CTACCAAGATCAAAATAACTAACACATCCGT CACCTCACACGGTTAACTCATTT---------------TT---------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------CAAAAGTCATTGTCTT---AGCCATGACTTTGGATT ATTAATGC------GTGTATAGTCTATAGTTGGGG--GGGGGGGAGCT >Ceratotherium_simum AACTTGCTTAAGATCACAGAGCAAGGAAATAATGCAGCTAGACCTCAAACCCGCAGAGTCTGA---TTCAAAGTTCA--- -TTTTC-T---TTTTTA-------ATTGAAGAATAAACAGGCATAATTGACAAAT-ACAGTTGTATACTATATTTAAAGT GTATAATGTGATGATTGGACATG-TATATATGCATTGT---GGAATGA-TTACCAAGATCAAGATGATTAACACATCCAT CACCTCACATAGTTAACTCAATT---------------TT---------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------CAAAGTTTATTGTCTT---AAAGGTGACTTTGGACA ATTAATGC------ATGTATAGTCTAGAGTT-------AAGGGGTCGT >Condylura_cristata AACTTGCTCAAACTCACAAAGCAAAGAAATAGTATTGCTAGACATCACACCCAC--AGCCTGA----------------- ---------------------------------------GGAATAATTGTCAAAT-ACAATTGTA---TATATTTAA-GA GTGCAGTG-GGTGACTGGCTATGTTGTAAATACATTAT---GGCATGG-TTACCAAGATCAAGATGATCCACACATCCAT CACC--GCAAAATTAA-----------------------T---------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------CAA-GTGCATTGTCCT---AGACATGACTGTGGGTA ATTCATGCAGCAAGATGGATTGTCTGTTGTT-------GGGGGGTACT >Uropsilus_gracilis AACTTGCACAAGATCACAG-GCACGGAAGTAGCACCGATGAACAGCACACTCAC--AGCCCAA---TTCAA-GTTTAGAT GTTTTCTT----------------TATGA----------GGAATAATTGGCAAAC-ACAAGTGTA---CATGTTGAAGGA GTTCAATGTGCCGACTGGACATGTTGCAACTACATTACAGAGAAATAAATGACCACAAGCAAGATAACCCACA-----AT GAGCTT-CAAAGTGAA-----------------------C---------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------CAA-ATGCCTTGCTCT---AAATGAGACTTTGGATA ATCA-TGT------ACATACTGTCTATCTTC-------AGGGTGTGCT >Canis_familiaris AATGTGCTCATGGTTACAATGTAGGGAAATAGCACAGCTAGAAATCACACCCACAGAGCCTGA----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------TT---------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------CAAATGTCGTATTCTT---AAACATGACTTTGGACA ACTAATGC------ACATAATGGTCATAGTTGGGGG-AAGGGAGTACT >Felis_catus AACTT------------GGCTCGGGGAAGGAGCACAGCTAGACATCAAAACCAG--AGTCTGA----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------TTCAAAGTTCATATTCTTGGGGCACCTGGGTGGCTCAGTCGG TTGGATGTCCTACTTCAGCTCCGGTCATGATCTCACGGTTCACGGGTTTGGGCCCCACGCTGGGCTCTGTGCTGACAGCT CAGAACCTGGAGCCTGCTTCAGATTCTGTGTCTCCCTCTCTCTCTGTCTCTACCCGACTCACACTCTCTCTGTCTCTCTT CTCTCAAAAATAAATAAAACATTAAAAAAATTTTTTTAATAAAAAAAAGTTCATATTCTT---AACCCTGACTTTGGACA ATTAATGC------ACATGTAGTCCAAGGTTGGGGTGGAAGGGGTGCT >Manis_pentadactyla AACTTGCTCAAGATTAGAAAGCAAAGAAATAGCACAGCTAGACGTCAAACCCACAGAGGCTGA----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------TT---------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------CAAAAATCATGGTCTT---AAACCTGACTTTGGATA ATTAATGC------AT-----GTCTGCAGTTTGGGG-GTGGGGGTGCT >Sus_scrofa CACTTGCTCAAGATCACAAAGCAAAAAAGCACCACAGCTGGACATCAACTCCACAGAGTCTGA----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------TT---------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------CAAGCTTTATTGTCTT----AAAATGACTTTGGATA ATTGGTGC------CTATATAGTCTATAGCT-------AAAGGATGCT >Bos_taurus AACTT------GATCACAAAGCACGGAAGTAGCACAGCAAGATGTCAAACCCAGAGAGTCTGA----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------TT---------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TAAAGTGTATTGTCCT---AAACATGACTTTGGATG ATTAGTGC------ATGTGTAATCTATTGTTGCA---GGGAGGGTGCT >Myotis_myotis AACTTGTTTAAGAT-------------------GCAGCTCGATATCAAACCCACAGAGTCCGA----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------TT---------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------CAAAGTTCAGATTCTT---AAACATGACTTTGGATC ATTAATGC------ATGTACAGT------------GAGAGGGGGTGCT >Rousettus_aegyptiacus AGCTTTTTTAAGATCACAAAGCAAGAAAGTAATGCAGCTAGAAATCAAACCCACAGAATCTTA----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------TT---------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------CCAAGTTCATAGTCCT---AAACATGATTTTGGATA ATTACTAC------ATGTTTAGTT--------------GGAGGATACT >Homo_sapiens AACTT--GCAATATCACGGAGCAAGGAAGTAGTGGAGCTAGACATCAAATCCAC--AGTCTGA----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------TT---------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------CGAAGTTCATATTCTT---AAACATGACTTTGGATG GTTAAAGC------ATGTATATTCTATAGT-------GGAGGTGTGCT Mole66_LINE >L1MA9_3END -------------------------------------------------------------------------------- ----------------------------------------------------GCAGGATGAATAAGTTCTGGAGATCTAA TGTACA---GCATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTT CTCACCACACACAAAAAAA---TGGTAACTATGTGAGGTGATGGATATGTTAATTAGC-------TTGATTGTGGTAATC ATTTCACAATGTATACGTATATCAAAA--CATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACC TCAAT---AA---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------AGCTGGAAAAA---------------------------------------------- --------------------------------------------------------------------- >Equus_caballus TTAGACCAATACAT------TTCTTTAAAGGATTCAGTAACTT----TGACTG------GCTTT---------------- ---AAAAATTT----------TTTT---TCAACATT----AAAAAAACA--------------------TGGAAATGTAA TGTGCA---GCATGGTGACTATAGTTAGTAATACTATATTGCATGTTTGAAAGTTGCTAAGAGAGTAAATCTTAAAAGTT CTCATCACAAGAAA-AAAATTTTTGTAACTTTGTATGGTGACAG--ATGTTAACTAGA-------CTTATTTTGGTGATC ATTTCTCAATATATATAAATATCGAAT--CATCATGTTGTACATCTGAAACTAATATAA-TGTTATAGGTCAATTATACC ACAATTAAAA---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------AAATAAATAAATAATTAAAAGGTCTAAATGTACCTA--GCAG---TTA--ACAA--- -CAACAACAAAATG---AACACCACATGTAAATACAATCTTT-TAGCCAAATT-TGCATGTTCATATGG >Ceratotherium_simum TTAGACCAATACAT------TTCTTTAAAGAATTCAGTAACTT----TGGCTG------GCTTT---------------- ---AAAAAAAT-----------TTT---TTAATATT---AAAAAAAATG--------------------TGGGAATGTAA TGTACA---GCATTGTGACTATAGTTAATAATACTATATTGCATATTTGAAAGTTGCTAGGAGAG---ACCTTAAAAATT CTCATCACAAGAAGAAAAATTTTTGCAACTATGTAT-GTGATAG--ATGTTAACTAGA-------CTTATTTTGGTGATC ATTTCTCAATATGTACAAATATCAAAT--CATTATGTTGTACATCTGAAAC-----TAA-TGTTATACGTCAACTACATC ACAATT-AAA---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------AAATAAATTAAAAATTAAAAGGTCTAAATGTACCTAGTGTAG---TTA--ACAA--- -AAAAAAAAAAATG---AACACCATATGTAAATACAATCTTT-TAGCCAAATT-TGCATTTTCATATGG >Condylura_cristata TTAGACCAATTCAT------ATCTTT-AAGGATTCAGTAACTG--ACAGACTGTAAAATGTTTTTTCTAACATAAAAAAC TTTAAAATGTT---------TTTTT---CTAACAT--------AAAAAG--------------------CAGGGGTGTAA CATACA---GTAAAGTGACTGTAGTTAATAAGCATATATTATATACCTGAACTCTGCCATGAGAG---ATCTTAAAATTT GTCATCGTGAGAAAAAAAA---TTGTAACTATGTATTGTGACTA--ATGTTAACAAAA-------CTTGAAAT-ATAATT AT-----AATTTATACAAATATCAAATAAAATTAAGTTGTACATCTGAAGGGAACATAA-TGTTATATGTCAATTATACT TTAGTAAAAA---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------AAC-------------AAAAGGTCTACATACACCTA--GTGG---TTA--GCAA--- -CAACCAAAAATTG---AACACCATATGTAAATATAATCTTT-TAGCCAAATT-TGCATTTCAATGTGA >Solenodon_paradoxus TTAGACCAACACAT------TTTTTAGGGCAGCATATTAACCACACTGATCTGAACTTTGCTTT---------------- ---TTTTCTTT----TTTTTTTTTT---GTAA--------GGAAAGGTG----------------CAGGCAGGAATG-AA GGCAAATAGGCAAGCAGGCAGGAAG-AACAGTACTGAATTGTATATTCAAAAGCTGTTAAGAGA----AATTTAGAAATT CTCATCATAAGAAAAAAAA----TGTTATTATATTTGGTGACAG--ATGCTAACTAGACGTATTGCTTATTGTGGTGACC ATTACAAAATGTATAAAAATACTGAAT--TGCTGTGTTGTACATCTGAAATTAATTTAA-TGTCATATGTCAACTACATG CCATTAAAAAGATAAGTACGTGTTCTGATGGCTCAGTGGTTAAATCTGCAACTCCAGATGACACAGTCCACATAAAAGCC CAGGACTGGCAGGTGGGGGACGGATGAAAGGGAAGTGTGACAGGACAACCAGCATGAGCAACTCAATGGATGGACAGACA CTTCTTTGTATTTCCTGCCTACCTACTTGCCTTCATTCCTGACAGCTTCCTTCCTTTAAATAAATAAATAATAACTTATA AATAAAATTCTTCATTTAAACAAAGATAAA----AAATTAAAAGGTCTCAATGTGCCTA--GTGG---TTAAGAAAAGAA AAAAAAAAAAAAAG---AACACCATATGTAAACACAATCTT--TTGCTAAATT-TTCAATTTAATGTGG >Canis_familiaris TTAGAGCAAT----------TTTTTTAAAGGATTCAGTAACTTCAACTAGCTG------GCTTT---------------- ---TAAATTTT-------------T---TTAACATT---AAAAAAAATG------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------AGTACCGTATGCAAATACAATCTTT-TAGCCAAATT-TGCATTTTAATATGG >Felis_catus TTAGAGCAATATGTGTATACTTTTTTAAAGGATTCAGTAACTTCAACTGGCTG------GATTT---------------- ---TAAATGTT-------TTTTTTT---TTAACAT-----AAAAAAATG------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------AGTACCATATGCAAATACAATCTTT-TAGCTAAATT-TGCATTTTAATATGG >Manis_pentadactyla TTAGACCAATATG-------TTTTTAAAAGGATTCAGTAACTT----TAGCTG------GCTTT---------------- ---AAAACGTT----------TTTT---TCAATATT---AAAAAAAAAG------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------AATGCCTTATGTAAATACAATCTTT-TAACCCAATT-TGCATTTTAATATGG >Sus_scrofa TTAGATCAATACAT------TTTTTTAAAGGGTTCAGTAACTTTAACCGCCTG------GCTTA---------------- ---AAAAATTT----------TTTT---TCAACATT---AAAGAAAATG------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------AATGCCATATGTAATTATAATCTTT-TAGCCAAATT-TGCATTTTAATATGG >Bos_taurus TTAGACCAATACAC------TTTTTAAAAGAATTCAGTAACTTTAACCACATG------GATTA---------------- ---AAATTCTT------------TT---TCAAAGTTAAAAAAAAAAATG------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------TACACCATATGCAATTATAATCTTTCTAGTCAAATA-TGCATTTTAATATAG >Myotis_myotis TTTGACCAATACAT------TTTTGAAAAGAATTCAGTCAATTTAACTGTCTG------GCTTT---------------- ---AAAATGGT-----------TTT---GTAGCATT-----AAAAAATA------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------AATGCCATATGTAAATACAAT-TTT-TAGCCAAATT-TGCATTTGAATATGA >Rousettus_aegyptiacus TTAAACCAATACAT------TTTTTTAAAGGATTCA-TAATTTTAACTGGCTG------GCTTT---------------- ---AAAATATTTTGGATTTTTTTTT---TTTACTT------AAAAAATG------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------AATGCCATATGTGAATACAATTTT--TAGTCAAATT-TGCATTTTAATATGG >Homo_sapiens CTAGATCATTAAGT------TTTTAAAAAGGATTCATT---TTTAACTGGCTC------GCTTA---------------- ---AAACAA--------------TT---TTAACATT---AAAAAAAATG------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------AACACCATATGTAAATAAAATCTTT-TGGCCCAATTCTGCATTTTAATATGG Mole75_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------TT----TTTCCAGCTTTATTGAGGTATAATTGACAAATAAAA------------------------------- -------------------------------------------------------------ATTGTATATATTTAAGGTG TACAACGTGATGTTTTGATATACGTAT----ACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACC TCACATAGTTACCATTTTTTTGTGTGTGGTGAGAA--------------------------------------------- ---------------------------- >Myotis_myotis TGCTGTGAAATACTTAAAACAATATACAA-AGGAAGG-----------------------GATTAATATCA---TTATCT ATGTAA-TT----TTTTA---TTTATTGAAATATAATTGGCATATAACA------------------------------- --------------------------------------------------------------TTGTATGAGTTTTAGATA TACAACATAATGATTTGATATGTGTAT----TTATTGCAAAATGATTATCACAGA-----TAGTTGAC--ATTTATCACC ACACATAGTTACAAAAATTTTTGG--------------TAATCCATGTAATTT---ACAGTTTTAATACTTTAGGTCTGA AGTACCCAAAATTCAGTTCTGCACCTTT >Rousettus_aegyptiacus TGCTGTGAAATACTGAAAACAATACAAAC-AGGAAGA-----------------------AATGAATATCA---TTATCC ACGTAATTT----TTTCATTTTTTATTGAAATACAATTGACATATAAC-------------------------------- ---------------------------------------------------------------TGTATTAGTTTTAGGTG TACGACATAATGATTTGATACATATAT----ATATCGTAAAATGATTATCACAAT-----TAGTTGAC--ATAAATCACC ACACACAGTTACAAAATTTTT-----------------TAATCTATATAATTT---ACAGTTTTAATACTTTAGATCTGA AGTAACTGAAATTTGGTTCTGTACCTTT >Condylura_cristata TGCTGTAAACTAGTGAAAATGATTCAAAA-AGGGAGATAAATACCATTATCCATGTAATGGATTAATACCA---TCATCG GTAATA-TT----TTTCATTTTTCATTGAGGTAGAATCAGCATGTAACA------------------------------- --------------------------------------------------------------TTGTATTAGTTTTGGGTA TATAC----ATGATTCCTTTTAGGTAA----ATATTGCGAAATGATTATCACAAT-----TAGTTAGA--ATTCATCCCC ACACGTAACCACAATTATTTT-----------------TAGTGCTTGCCATTT---AAAGTCTTAATATTTAAGGTCTGA AGTAAACCAAGT--AAACCTGTACCTTT >Erinaceus_europaeus TGCTGTAAAACATTACAAATAATACAGGC-AGGAGGA-----------------------GATTGATATCA---TTATCC ATATAAATT---ATTTTCCATCTTATTGCAGTATAATTGACACATAGCATAATATAAGGTAGGCTGTAAAATTCCAGGTT CTGTCCCCAGCAAAAGCCACAAATAAGCAGCACTTTGGTTAAAACACACACACACACACACACTATAATAGTTTTTGGTG GACAATGTAGTGATTTGATATATATATATATATATTATAAGTTGATTATTAAAAT-----CTGTTAAC--TTCTACCCCA ACACACAATTACAGATATGTT-----------------TAATCCATATAA---------------AAATTTAGGCTCTGA ATCAACCCAAAATCAACTCTGAAACTTT >Canis_familiaris TGCACTAAAAGATCAAAAACAATACAAAC-AGGAAGA-----------------------GATTAGTATCA---TCATCC ATGTCATTT----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------AAAGTCCTAATACTTTAGGTATGA AGTAACCAAAGTTCAGTTCTGCACCTTT >Felis_catus TGCTATAAAATATTAAAAACAATACAAACAAAGAAGA-----------------------GATTCATATCA---TCATCC GTGTCATTT----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------AAAGCCCTAATATGTTAGGTATGA AGTAACCAAAATTCAGTTCGGCGCCTTT >Manis_pentadactyla TGCTATAAAATGTTGAAAACAATACAAAC-AGGAAGA-----------------------GATTAGTATCA---TTACCC ATGTGATTT----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------CAAATCCTAATACTTTAGGTCTAA AGTAAACAAAACTCAGTT------CTTT >Sus_scrofa TGCTATAAAATATTGAAAACAATAGAAAC-AGGAAGA-----------------------GATAAATATCA---TTATCC ATGTAATGC----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------AAAGCTCTAATAATTTAGGT---- ------CAAAATTCAATTCTGCACCTCT >Bos_taurus CAATGTAAAATATTGAAAGCAAAACAAAC-AGAAAGA-----------------------GATTAATATCA---TTTTCC ATATAATTT----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------AAAGTTCTAATAATTTAGTTAGGA TGGNNNNNNNNNNNNNNNNNNNNNNNNN >Equus_caballus GGCTGTAAAATATTGAAAAC-CTACAAAC-AGGAAGA-----------------------GATTAATATCA---TTACTC ACGTAATTT----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------AAAGTTCTAATGATTTAGGTCTGA AATAACCAAAATTTAGTTGTGCACCTTT >Ceratotherium_simum TGCTGTAAAATGTTGAAAGC-CTACAAAC-AGGAAGA-----------------------CATTATTATCA---TTACCC ATGTAATTT----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------AAAGTTCTAATAATTCAGGTCTGA AGTAACCAAAGTTCGGTTCTGCACCTTT >Homo_sapiens AGCTGTAAAATATTGAAAATAATACAAAT-AGGAGGA-----------------------GATGAATATCA---TTACCT ATGCAGCTT----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------TAAGTCCTAACACTTTACTTCTGA AGTGATCAGAATTCAGTTTTGTGACTTT Pig1_LTR >LTR9A_EC -------------------------------------------------------------------------------- -------------TG--TTTTGTGCCNGTCTCAGCCTATCAATAACCAATGTTGTGGCTGGACCAGCCCTTGTGGTTCTT ATTATGATTGCAAGATGCCCTTCAGCAATAACCATCAGGAAACTTTGAAAAAATAAAGGTTTATTACTTACAGGACCTGG AAATTACACAGCACACCTGGGGCCACACAG-----CGAGGTCACGGGTAGAGAGAGAGAGAGAGAGTACACGGGC----- --------------CTGGGGTTCTGCTTTTATTGGGGTTGAGGGTGGGGGCCTAGGGTTTCGTGGGCTCACTCTTTATTG GTGAATTTAAAACATAAGAGTNGGAATTTAAAGCACAGGAAGAGGAAAAAAAAACAAGTGGCCCAAATGGTCAGTTATTG AAATCAACCAAGATCTCTAAAACAAAGGAGCCTCAGTGGGGGGAGGCGGCCTGGCTCTTTATCTAGTCGTGTGGCTGGCA ATGTGTTTATTCGAGATAGCCATCTTTGAAGTGGATGCCTCTTTGAAGTGGATGCCTCAGCAATCAAAGCTTAAGTCAGG CACTTGCATTACAAAAAAGAAAAAAAA----------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------AACAACTGTCA GGGCTTACACTACACA---------------------------------------------------------------- ----------- >Sus_scrofa TGAATAAACTAATAAACACGTC---TCTGTATTTCAGAGCTAAATAAAC---ATCTCTTT-GGGGAGTTCACTGTATAAG GT---AGTAA---TG--TTTAGTGCTGGTCTCAGTCCATCAATAACTAATATTGTGGCTGGACTAGACCTTGAAGTTCTT ATTATGACAGCAAGATGCCCTTCAGCAGTAACCATCCGGAAACTTTGAAAAATGAAAAGTTTATTATCTAAAGGACCTCA GACTTATACAGCACCCCTGGAGCCACATGGGAGGTTGAGGTTGGAGGAGAGGGGAGAGAGAGTGAGAGAGCGTGAGCAGT TGAGCATGCAGGCCAGAGGGTTCTGCTCTTAAT-GGGTTGAGGTTGGGGGCCTAGTATTTCCGGAGGTCATTCTTTGTCG GTTAATTTAAAACATAAGTGCAGGAATTTAAGGCTTGGGGAGAGGAAAAAAAAATCAGT---TCAAATGGTCAGTTACTA AATCCAATGGTAACT-----GACAAAGAAGCCTCAGTG-GGGGAGGTGGCCTGGTTCCTTATCTAGTCTTGGGGCTGGCA GTGCGTTCATTGGAGATGGCCATCCTTGAAGTGGATACCTCTTTGAAGTAGATACCTTGGCAATCAAAACTTACATC--- -----------CAAA---GGAG---AA----------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------GCCAACTTTTT GGGTTTACACTACA-----AGTAG---CACATGGGGAAAGCCAGCGTCT-CA----GTT-TTGGAGATCA--AAG--AGA AGGTATGTTCA >Bos_taurus TGAATAAACTAATAAACAAGTC---CCTTTATTTCAGAGCTAAATAAAC---ATCTCCTT-TGGGAGTTCACTGTATGAG GT---TATAG---TGTTTTTTGTGCTGGTCTCAGCCTATCAATAACTAATGTCATGGCTGGACTACCCTCTGTGGTTCGT GTTATGATAGCGGAACACCCTTCAGCAATAACCAT-AGGAAACTTTGAAAAAATACAGGTTTATTACTTACAGGGCTTGG AAATTACACAGCACAGCTGGGTCCACATGG-----TGAGGTTGAGGTTGGAGGGAAGGAGACAGAGAAACAACACACATG TAAACATGCAGGCCAGGGGGTTCTGCTTTTACT-GGGTCAGAGGTGCGGGCCTAGGCTTTCTGGTGCTCATTCTTTATTG GCAAATTTAAA---------------------GCCTGGGAAGAGAAAAAAAAAATCAGT---CCAAATGATCAGTTATCA AAGCCAACCAAGATCTTTAAAACAAAGAAGCCTCAGTG-GGGAAGGTGGCCTGGCTCTTTGTCTCGTCTTGTGACTGGCA GTCTGTTCATTGGACATAGCCATTCTTGAAGTGGATGTCTCTTTGAAGTGGATACTTTGGCAATCAAAACTTAAGCCAGG CGCTGGCATTACAAA----------AAGTCCATGCTTAGGGTTTACACTGTTGCTGCTAAGTCGCCTCAGTCATGTCCGA CTCTATGCGACCCCATAGACGGCAGCCCACCAGGCTTCCCCGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTT GCCATTTCCTTCTCCAATGTATGAAAGTGAAAAGTGAAAATGAAGTCGCTCAGTCGTGTCTGACCCTCAGTGACCCCATG GACTGCAGCCCACCAGGCTCCTCCATCCATGGGATTTTCCAGGCAAGAGTACTGGAATGGGGTGCCATTGCCTTCTCCAA GGGTTTACACTATAA----CGTAG---CAAATGCGGAGAGCAAGAATCT-AA----GTT-TTGGAGGTGA--AAGAGAGA GGATGTGTTCA >Equus_caballus TGAATAAACTAATAAGCAAGTC------------------------------------------------TCTGTATAAG GT---AGTAG---TG--TTTTGTGCCAGTCTCAGCCTACTGATAACCAACATTGTGGCTGGACCGGCCCTTGTGGTTCTC ATTATGATTGCAAGACACCCTTCAGCAATAACCATCTGGAAACTTTGAAAAAATAAAGGTTTGTTACTTACAGGACATGG AAATTACACAGCACACTTGAGGCCACACAG-----TGAGGTTGCAGGTACAGAGAGAGAGAGAGAAAACGAGCTT----- ----------------GGGCTTTTGCTTTTATTGGGGTCAAGGGTGAGGGCCTAGGGTTTCATGGGCTCACTCTTTATTG ATAAATTTAAGGCATAAGAGTGGGAATTTAAAGCCTGGAAAGAG-AAAAAACAATATAC---CCAAATGATCAGTTATGA AAACCGACCAAGATCTCTAGAACAAAGGAGCTTCATTGGTGGGAGTTGGCCTAGCTCTTTACCTAGTTGTGTGGCTGGCA ACGTGTTTACTTGAGATAGCCATGTTTGAAGTG-----------------GATGCCTTGGCAATCAAAGCTTAAGTCAGG CACTTGTGTTACAAAAA-GAAAA--AA----------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------GCCAGCTGTCA GGGTTTACACTACA-----AGTAG---CAAATGGGGAAAGCAAGAATCT-AA----GTA-TTGGAGATCA--AAGCGAGA GGGTGTGTTTA >Ceratotherium_simum TGGATAAACTAATAAATAAGTC-----TGTATTTCAGAGCTAAATAAACATGATCTCTTT-TGGGAGTTCACTGTATAAG GT---AGTAG---TG--TTTTGTGCCAGTCTCAGCCTATCGATAACCAGTGTTCTGGCTGGACCAGCCCTTGTGGTTCTT ATTATGATTGGAAGACACCCTTCAGCAATAACCATCAGGAAACTTTGAAAAAATAAAAGTTTATTACTTATAGGACCTGG AAATTACACAGCACACCTGGGGCCACACAG-----TGAGG-TACAG--AGAGAGAGAGAGAGAGAGAATGAGCCT----- ----------------GGGGTTTTGCTTTTATTGGGGTCAAGGGTGAGGCCCTAGGATTTCATGGGCTCCCTCTTTATTG GTGAATTTAAAACGTAACAGTGGGAATTTAAAGCCCGGGAAGAG-AAAAAACAATTGGC---CCAAATGGTCAGTTATGA AAACCAACCAAGATCTCTAAAACAAAGGAGCTTCAGTGTGGGGAGGCAGCCTGGCTCTTTACCTAGTTGTGTGGCTGGCA ATATGTTTACTTGAGATAGCCATCTTTGAAGTG-----------------GATGCCTTGGCAATCAAAGCTTAAGTCAGG CACTTGCATTACAAAAA-GAAAA--AA----------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------GCCAACTATCA GGGTTTACACTACA-----AGTAG---CAAATGGGGAAAGCAAGAATCT-AA----GTA-TTGGAGATCA--AAGGGAGA GGGTGTGTTTA >Canis_familiaris CGAATAA-----TAAACAGGTC---TCTGTTTTTTAGAGGTAAATG-ACATAATCTCTTTGGGGGAGTTCACTGTATAAT GT------------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AGTAG---CAAATGGGGAGAGCAAGAACCT-AA----GTA-TTGTAGCTCA--AGGGAAGA GGGTGTGTTCA >Felis_catus CGAATAA-----TAAACAGGTC---TCTGTATTTTAGAGCTAAATAAACATGATCTCTTTGGGGGAGTTCACCATATAAT GT------------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AGTAG---CAAGTGGGGAAAGCAAGACTCT-AG----GTA-TTGGAGACCA--AGGCAAGA GGGTGTGTTTA >Manis_javanica TGAATAAACTAATGAACAAGTC---TCTGTCTTTCAGAGTTAAATGAACATGATTTCTTT-TGGGGGTTCACTGTATACA GT------------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AGTAG---CAAATGAGTAAAAGAAGAATCT-AA----GTA-CTAGAAATCA--AGAGGAAA GGGTGTGTTCA >Myotis_myotis TGAATAAACTAATAAATAAAACAAGTCTCTGTTTCAGAGCTAAATAAACATGATTTCTTC-TGGGAATTCACTGTACAAG GT------------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------GGTAG---CAAATAGGGAACGCAAGAATATCAAGTATGTATTTGGAGATCA--AGGAGAGA GG-TCTGTTCA >Rousettus_aegyptiacus TGAATAAACTAATAAACAAGTC---CCTGTGTTTCAGAGCTACATAAACGTAATCTCTTT-GGGGAGTTCACTGTATAAA GG------------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AATAG---CAAATAGGGAAAGCAAGACTCT-AAGTATGTA-TTGGAGATCA--TGGGGAGA GGATGTGTTCA >Condylura_cristata TGAGTAAACTAATAAACAAATC---TCTGGATTTCAGAGCTAAAGAAACCTGATCTTCTT-TGGGAGTATATTATTTAAG AT------------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AGTAG---AAAAT-GAGAAAACAAGAATCTTAA----GTA-TTAAAAAAGATCAAGGGAGA GGGTCTATTCA >Sorex_araneus TGAATAAACTAAGAAGCAAGTC---TTTATATTTCAGAGTGAAATAAACATGATCATGT--GGAGAGTTTGCTGTATAAG GT------------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------AGTAG---CAAATAGGGTAAGCAAGAATAT-AG----GTG-TTGGGGATCA--AGGAGAGA GA----GTTCA >Homo_sapiens TGAATAAAC----------------TCCATATTTCAGAGCTAAATAAAC---ATCTCCTT-TGGGAGGTCACTGTACAAG TT------------------------------------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------GGCAG---CAAATGGAGAAAGCAAGAACCT-AA----GTA-TTAGAGATCA--AAGGGAGA GGATGTGTCCA Pig2_LTR >ERV54-EC_LTR -------------------------------------------------------------------------------- -------------TGTT-AAAAACAAGACAACAGGCC-CAAAATGGAGTCACTTAT-------GCTAAGCCCCACGTCAC CAAACCGAGACTTAACTTAATTACAGTTTCGGCTCTCCCAGAAATGGAATCTTAAACCAGTCAATCAGGAATCACCTGAT CAGCACTAGTTAGGTA----ATCTGCCTGATAGACC--CCTGCCATCC-------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------CCTAAAGGAAAGTAACCTT GCAATAACCAATCCAC-----TTTTTTGCCTAGTATAACTTCCTTGTTCCTGCTCCCTTCTGCCTATAAAAGTCTTTCAT --TTTGTACAGCTCCTCGGAGCTCCTTTCTATCTGCTAGATTGGATGCTGCCCAATTCATGAATCATTGAATAAAGCCAA TAAGATCTTTAAAATTTACTCAG--------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------TTGAATTTTGTTTTTTAACA-------- -------------------------------------------------------------------------------- >Sus_scrofa CTTGGTAAAGGTATTAATTATTTTCCCCTTTAAGATTCC---------------------------------CCAGGAGG TTA---CACC---TATT-AAAAACAAGACAACAGTCCCCAAAATGGAATTGCTTGT-------GCTAAGCCCCACATCAT CAAACTGAGACTTGACTTAATTACAGTTTCGGCTCTCCTAGAAGTGGAATCTTAAATCAGTCAATCAGGAATGGCCTGAT CAGCACTGGTCAGCTA----ATCTGCTTGATGTTCC---CTGCTGTCC-------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------CCTGAAGGAACATGATTTT ACAATAACCAACCTGCTTTTTTTTTTTGCCTAATATAACGTTCTTCTTCCTGCTCCCTTCTGGCTGTAAAAGTCTTTCCT --TCTGTATAGTTCCTCGAAGCTCTTTTCTGTCTACTGGATTGAATGGTGT-TGATTCATATATTGTTGAATAAATCCAA TAAGGTCTTTAAACTTTACTCAGTTTGTTTTAAATTTAATTTCATTTTTCCCCTTTTTTACAGCTGCACTTGCGGCATAT GGAAGTTCCCAGGCTGGGGGTCCAATCGGAGCTGCAGCTGCCAGCCTATACCACAGCCACAGCAACACCAGATCCTAGCT GTGTCTGCAATCTATACCACAGCTCACTGCAACGCTGGATCCTTTAACTCACTGAGCAAGGCTAGGGGTTGAACCTGTAT CCTCATGGATACTAGTCAGTTTCTTAACCCACTGAGCCCCAATGGGAACTCCCTTCAGTTTGTTTTTTAGCA---CACC- --CTTTGAAAGACACACAGTTCACTCTCCT-GGGAAGCATCTGGCTTTTTGGTAAGTCCCAGTCTTGGTCTCAAAGTTGT >Bos_taurus GTTGGTAAAGGTGTTAATTATTTTCCCTTTTAAGAATCC---------------------------------CCAGGAGG TTA---TACC---TGTT-AAAAACAAGCCAAAGGGCC-CCACATGGAGTTGCTTAT-------GCTAAGCCCCACATTAT CAAACTGAAATTTGACTTAATTACAGTTTTGGCTTTCCCAGAAATGGAATTTTAAACTAGTCAATCAGGAATGGCCTGAT CAGCATTAGTTAGGTA----ATCCTCCTGATGCTCCCTCCTACCATCC-------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------CCTAAAGGAAAGTGACCTC CCAATAATCCACCTAC-----TTTTTTGCCTAGCATAACTTTCTTATTCCTGCTCCCTTCTGGTTATAAAAGTCCTTCAT --TTTGTACAGCTCCTTGGAGCTCCTCTCTATCTGCTAGATGAGATGCTGTCTGATTCATTAATTGTTGAATAAAGCCAA TAAGATCTTTAAAATGTACTCAG--------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------TTGAATTTTGTTTTCTAATA---CACC- --CTTTGAGAGACACACAGTTCATTTTCCAGGGGG-------------------------------------AAAGTTCT >Equus_caballus TTTGGTAAAGGTGTTAATTGTTTTCCCTTTTAAGAAGCC---------------------------------TCAGGAAG TTA---CACA---TGTTAAAAAAAAAGACAACAGGCC-CAAAATGGAGTCGCTTAT-------GCTCAGCCCCATAGCAT CAAACTGA-----GACATAACTACAATTTCAGCTCTCCCAGAAATGGAATCTTAAACCAGTCAGTCAGGAATGGCCTGAT TAGCGCTAGTTAGGTA---ATTCCACCTGATAGACT--CCTGTCATCC-------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------CCTCAAGGAAGGTAACCTT ACAATAACCAACCCAC-----TTTTCTTCCTAGTATAACTTCCTTGTTCCTGTTCCCTTCTGGCTATAAAAGTCTTTCAT AATGAGTACAGCTCCTTGGAGTTCCCTTCTATATGCTAGATTGGATGCTGGCTGATTCATGCATCATTGAATAAGGCCAA TAAAATCTTTAAAATGTACTCAG--------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------TTGAATTTTCTTTTTTAACT---CACC- --CTTTGAGAGACACACAGTTCACTCTCCT-GGGGAATGTCTGGCTTTTTGGTAAGTCCCAGTCTTGGTCTCAAAGGTCT >Ceratotherium_simum CTTGGTAAAAGTC----TTGTTTTCCCTTTTAAGAATCT---------------------------------TCAGGAAG TTA---CATC---TGTT-AAAAACAAGACAACAGGCC-CAAAATGGAGTCACTTTA------CTTTACGCACCACGTCAT CAAAGCGA-----GACTTAATTACAGTTTCAGCTCTCCCAAAGATGGAATCTTAAACCAGTCAATCAGGAATGGCCTAAT TAGCACTAGTTACATA----ATCTGCCTGATAGACC---TTGTCACCC-------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------CCTAAAGGAAAGTAACCTT ACAATAACTGACCTAC-----TTTTCTGCCTAGTATAACTTCCTTGTTCCTGCTCCCTTCTGGCTGTAAAAGTCTTCCAT --TTTGTACAGCTCCTCAGAGCTCCTTTCTATATGCTAGATTGGATGCTTCCTGATTCATGAATCACTGAATAAAGCCAA TAAGATCTTTAAAATTTACTCAG--------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------TTGAATTTTGTTTCTTAACA---CACC- --CTTTGAAAGACACACAGTTCACCTTCCC-GGGGAATGTCTGCCTCTTTGCTAAGTCCCAGTCTTGGTCTCAAAAGTCT >Myotis_myotis CTGGGTAAAGGTGTTAATTGTTTTTCCTTTTGAGAATCC---------------------------------TCAGG--- TCA---CACC---TATT-AGAAACAAGACAACAGGCC-AAATAGAAAGTCGATAAT-------GCTAAGCACCATGTGAC CAAACAGGAGA-CAACTTAATTACAGC-TCAGCTCTCC---AGAAGCGAATGTTAACCAGTCAACCAAGAACCACCTGAT CAGCACTAGCTAGTTAGGTAACCTGCCTGAGAGGCC--TCTGCCGCCCTCTAAAGCAGGGGTGGGGAACACCTGGCCCTC GGAATCATTAGGTCTGGCCCTGCCAAGGCATTAGGGGTGAGTTAATGAAATGTTTGACCAAATATAGCAGGCTAATTTAT TTTTTAAAAAATATATATTTTTATTGATTTCAGAGAGGAAGGGAGAGGGAGCGATAGATAGAAACATCAAGGATGAGAGA GAATCATTGATTGGCTGCCTCCTGCACGCCCCCTACATTGCATTCTTCTGCGTTTCTTTTCTGGGGTGGTGATGGGTATT TGTGGTTTCTGTTTGTGGGAGGACACCACCAGCACACCACTGGGTAAGGGATACTCCAGGCAGTATGAAGTGGTGATCAT ATAAAATATTGGTAGAAAATGATATTGAATGTCAACTGCAGTTGAAAAATAAATAGTGTTGATAGGCTTCCTGAAAGGAG CCATCAGTTAGGCAACACACTGATCAGCCCACAACCTGGGCATGTGCCCTTGACCAGAATTGAACCTGGGACCCTTCAGT CCGAAGGCTGACATTCTATCCACTGAGCCAAACCGGCTAGGGCTAGCAGGCTAATCTTTAAGCTGGTAATTTTGTGTGGC CCTTGAAAGATGTTATAAATATCCAAATGGCCCTTGGCAGAAAAAGGTCCCACCCCTGCAGTCTAAAGGAAAGTGACCTT GCAATAACCAGCCCAC------TTGTTGTTTAGTGTAACTTTCTTGTTTCCGCTCCCTTCTGCGTATAAAAGCCTTCCAT --TTCGTCCCGCTCCTGGGAGCTCCCTTTTATCTGCTAGATGGGATGCCGCCCAATCCCCCAATCACTGAACAAAGCCAA TACGATCTTTAACATTTACTTGG--------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------TTGAATTTTGTCCTTTAGCA---CATC- --CTTTGAGAG--ACACAGGTGGCTCTCCTGGGGG---GTCTGGCTCTTTGGTAAGCCCCAGTCTTGGTCTCAAAGTTCT >Pteropus_vampyrus CTTGGTAAAGGTATTAATCGTTTTTCCTTTTAAGAAGAC---------------------------------TCAGGAGG TCG---CACC---TGTT-ATAAACAAGACAATAGACC-AAAAGCAAGGTTGATTATTTATTTGTTTAAGTCCCATGTTAC TAAACTGACACTTAA------------------------------GGAACCTTAAACTAGTCAACCAGGAATCACCTGAT CAGTACTAGTTAGGTA----ATTGGCCCGATAGACC--CCTGCCATCC-------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------CCTAAAGGAAAGTGACCTT GCAATAACCAACCTGC---ATTTTTTGGCCTAATATAACTTCCTTGTCTCCGCTCCCTTCTGCTTATAAAAGTCTTTCAT --TTTGTCCAGCTCCTCAGAACTCCTTTTTATTTGCTAGATGGGTTGCTGCCCAATTCATGAGCCATTGAATAAAGCCAA TAAGATCTTTAAAATTTACTCAATTTTTTTT------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------TTTTTTTTTTTTTTTTAGCT---CACC- --CTTTGAGAG--ACACAGTTCACTCTTGT-GGAGAATAGCTGGGTCTTTGGTAAGTCCCAGTCTTGGTCTCAAAGTTCT >Canis_familiaris ATTGGTACAACGG---ATCTGGTGACCTTCACAGAATCC---------------------------------CCCGGAGG TTA---CACC---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --CTCTAAGAGACACAAAGATCAGTCTCCT--GGGAGTGGCTGGCTCTTTGGTAAGGTCCAATCTTCGTCCCAAAGGTCT >Ailuropoda_melanoleuca ATTGGTAAAAATGTTAACTGTTTTCTCTTTTCAGAATCC---------------------------------CCAGAAGG GTA---CATC---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --CTTTGAGAGACACACAGTTCAATCTCCTGGGGGAGCGACTGACTGTTCGGTAAGTTCCAATCTTGGTCTCAAAGGTCT >Manis_javanica CTTGGTAAAGGTGTTAATTGTTTTCTCTTTTAAGAATCT---------------------------------CTAGGAGG TTA---TGCC---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --CTTTGAGAGACATAAAGGTCACTCTCCT--GTGGATGCCTGACTC--TGGCAAATCCCAGTCTTGGTATGGAAGTTCT >Condylura_cristata CTTGGTA-AGGTG----TTGTTTTCCCTCTTAAGACGCC---------------------------------TCAAGAAT TTG---CACC---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --TTTGGGGAGACACACAGCTCACGCTCCT-GGGAAATGGCTGACTCCTTGGTAAGTCCCAATCTTGGTCTCAAAGGTCT >Solenodon_paradoxus CTTGTTA-AGATGTTAATTATCTTTCTTTTTAAGAAGTC---------------------------------CCAGGAGG TTA---CACC---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --CTTTGACTGACACACAGTACACTCTCTTGGGGGAAAGTCTGGCTCTTTGGTAAACCACAGTATTGGTTTCAAATGTCC >Homo_sapiens CATGGTAAATGTGTTAATTATTTTCTCTTTTAATAATTCTCTGTTTTTGTAGTGGGAAGTGAAAAAAAAATTCCAGGAGT TTA---CACC---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --CTTTGAGGGACACACAGTTT-CCCTCCT-AGGGGCTGCCTGGCTCTTTGGTAAGCCCCAGTCTTGGTCTCCAAGGTCT Pig4_LTR >MLT1A0 -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---TGCTATGGTCTGAATGTTTGTGTCC----CCCCAAAATTCATATGTTGAAA-CCTAATC-CCCAATGTGATGGTATT AGGAGGTGGGGCCTTTGGGAGGTGATTAGGTC-ATGAGGGCGGAGCCCTCATGAATG----GGATTAGTGCCCTT----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------ATAAAAGAGACCNCAGAGAGCTCCCTTGCCCCTTCCGCCATGTGAGGACACAGTGAGAAGGCGCCGTCTATG AACCAGGAAATGGGCCCTCACCAGACACT-----GAATCTGCCGGCGCCTTGATCTTGGACTTCCCAGCCTCCAGAACTG TGAGAAATAAATTTCTGTTGTTTATAAGCTACCCAGTCTATGG------------------TATTTTGTTATAGCAGCCC GAACAGACTAAGACA----------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------- >Sus_scrofa -TGGACAGTCT---------------GCTTTTGTAAACAGATGACTCACA--------CACAAAAATCAA-ATATATTA- --GG---------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------TAGCAAAGAAAGTGTAATCACCAAAGCGAGATTCTAGGGG---CCTCCT----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------AAATTTTCAT-CAAG ------TATGGTCTGAATGTTTGTGTCC----CCACCAAATTCATATGTTGAAACCCTAATG-CCTGAGGTGATG---TT AGGAGGTAGGGCCTTTGGGAGATGCTTAATTC-GCAAGGGCAAAGCCCTCATGGATG----GGATCAGTGCACTC----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------ATAAAGGAAGCCCTAGGGAGCTAGCTTGCCCGGTCCAGCATGTGTGGACACAGGGAGATGG------CTAGG AAGCAGGAAGTGGGCTCTTACCAGCCACTACACCGTATCTGCCAGCACCATGATCTTGGACTTCCCAGTCTCCAGA-CTG TGAGAAATAAATGTCTGTTGTTCATAAGTTACCCAGTCTGTGATTTTTTTTTTTTTTTTTTTTTTTTGTTCTACCAGCCT GGAGAGACTAAGACA---AGTAGTAA---------AATAAGTATTATCACAAAAACGATATTTC---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------AGGGG-TCTTCAAAATCTGCTCAAAG---AA-CTCAC AAATTCCCTTTATTC----------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------AAGAAAGTTTCAGAATTAAAA-GACCATCCAA >Bos_taurus -TGAACAACCCAAGACATAGGTTTTTATTTTTGTAAGAACACTACT------------AACAAAAATCAA-ATATATTA- --GGGGACTTCCCTGGCAGTCCAGTGCTTAAGACTCTGTCCTTCCAGTGCAGGGGGCATGAGTTCAATCCCTCATGAGGG AACTAAGATCACCCATGCTGTGCAGTATGGCCAAAATTATATAAATAAATAAATAAATTGTTTAATAAAATCAAATATAT TGGAGGCTTTCCAGGTGGTGCTAGTAGTTAAAAAAAAAAAAAAATCCACCCCAATGCAGGAGACGCAAGAAATGCAGGTT TGATCCCTAGGTTGGGAAGATTCCCTGGAGAAGTAAATGGCAACACACTCCAGTATTCTTGCCTGGAAAACTACATGGAC AGAGGAGCTTGGCAACTCCAGTCCATGGGGTCACAAAGAGCCAGACAAGACTTAGCATGAGTGCACGCACACACAGAGAT ATGTTAGACGGTAAAGAAGATGTTATTACTAA-GTGATATTCTAGGAA---CCTCCTAGATTTGCTTTAAAGAAAAAAAA AAAGTGAAATGAAAGTGTTAGTCACTCAGTTGTACCCGAATCTTTGCAACCCCATGGACTGTAGCCCACCAGACTCATGT CCTCTGTCCACGGAATTTTCCAGGCAACAATACTGGGGTGAGTTACCGTTCCCTTCTCCACGGGAATCTTCTTGACTCAG AGATCAAACCCAGGTCTCCTGCAGTGTAGACAGATTCTTTACCATGTGAGCCACCAGGGAAGCCCAAATTTGCCT-AAAG ------TATGGTCTAAATAGTTGTATCC----CAATCAAATTCATATAATGAAATCCTAATG-CCTGATGTGATAGTATT AGGAGGTGAGGTCTTGGGGAGGTGCTTAGTTTAACAAGGGCAGAGCCCTCATGAATG----GGATTAGAGCCTTC----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------ATAAAGAAGGCCCCAGTGAGTTGGCTTGCCCCTTCCAGCAGGTGAAG--ACAGCAAGATGG------CTATG AACCAGGAACTGGGTTCTCACCAGCCACTACACTGTATCCATTAGCACTGTGATCTTGAACTTCCCAGCCTCCAGA-CTG TGAGAAATGAATGTCTGTTGTGCATAAGCTACCTGGTCTATGA------------------TATTTTGTTATAGCAGCCT GGAGAGACTCAGAGA---GATAGCAA---------AGAAAATGTTATCACAAAA--TATATTCTAGGGGCCTCCGAGGGC TTCCCTGGTGGCTCAGCTGGTAAAGAATTCTCCTGTAATGTGGGAGACCTGGGTTTTATCTCTGAGCTGGGAAGATCACC TGGAGGAGGGCATGGCAACCCACTCCATATTTTTCCCTGGGGAATCCCCATGGACAGAGGAGCCTGGCAGGCTACTAGTC CATGGGGTTGCAAAGAGGCAGATACAACTGAGTGACTAAGCACAGGGG-CCTCCTAAATTTGTTCAAAG---AAACTCAC AAATTCCCTTTTTCCAAGAAAGATCCACCACTGTACAGCACAGGGAACTATATTCAATATTTTGTATTCACTATAAGGGA AAAGCATCTGAATACAAAATACGTGTGTGCATAACTAAATCACTTTGCTGTACATTTGAAACTAACACAACATTGTAAAT CAACTATACTACAATTTAAAAAAAAAATGTACATAAAAGAAAGTTCCACAATTTAAA-GACTGTCCCA >Equus_caballus -TGAACAACCCAAGAGATAGGTTTTGGTTTTTGTAAAAAGAAGACTAACA--------AACAGAGGTAAA-AACCATTA- --GG---------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------CAGTAAAGAAAACATTATCACAAAGGTGATATTCTAGGGG---CCTCCT----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------AAATTTGCTT-AAAG ------TACAGTCTAAATGTTTATGTCC----CTCCAAAATTCACATGTTGGAATCCTAATG-CCCGATGTGATGGTATT AGTAGGTGGGGCCTTTGGGAGGTTATTAGGAC-ATGAGAGAGGAGCCCTCCTGAATG----AGATTAGTGCCTTT----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------ATAAAGGAGGTCCCAGAGAGCTTGCTTGCTCCTTCCTCCAGGCGAAGACACAGCGAGAAGG------CTACG A------AAGTGGGCTCTCACCAATGGCTACACCGAATCTGTCAGCGCCACGATCTTGGACTTCCTAGCCTCCAGA-CTG TGAGAAATAAATGTCTGTAGTTTATAAGCTATCCAGCCTGTGG------------------TATTTTGTTATAACAGCCT GAACAGACTAAGACA---GGTAGTCA---------GGAAAGTGTTATCACATGAGTAATATTCT---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------AGGGG-CCTCCTACATTTGCTCAAAG---AAACTCAC AAATTCCATTTTTTC----------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------TGAGGTTCCAAACTTAAAA-GACTGTCTAA >Ceratotherium_simum -TGAACAACCCAAGAGATAGGTTTTGGTTTTTGTAAAAAGACAACTAACA--------AACAAAGGTCAA-ATACATTA- --GA---------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------CAGTAAAGAAAATGTTATCACAAAAGTGATATTCTAAGAG---CCTCCT----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------AAATTTGCTT-TAAG ------TATGGTCTAAGTATTTGTGTCC----CCCTAAAATTTGTATGTAGAAATCCTAATG-CCCAATGTGATGGTATT AGTAGGTGGGGCCTTTGGGAGGTGATTAGATC-ATGACGGTGGAGCCCTCATGAATG----GGACTAGTGCCCTT----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------ATAAAGGAAAGCCCAGAGAGCTTGCTTGCACCTTCGACCAGGTGAAGACACAGTGAGAAGG------CTATG AACCAGGAAGTGGGCTCTCACCAAAGGCTACATGGAATCTGCCAGCGCCATGATGTTGGAATTCCTAGACTCCAGA-CTG TGAGAAATAAATGTCTATTGTTTATAAGCTATCCGGTCCGTGG------------------TATTTTGTTATAACAGCCT GAATAGACTAAGACA---GGTAGTAA---------AGAAAGTGTTATCACAAAAGTGATATTCT---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------AGGGG-CCTCCTTAATTTGCTCAAAG---AAACTCAA AAATTCCATTTTTTC----------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------AAAGAGGTTCCAGAATTAAAA-GACTGTCCAA >Myotis_myotis -TGAACAACCCAAGAGATAGGTTTTG------GTAAAAATAAGACTAACA--------AATAAAAGTCAA---------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------AAAATTTTATCACAAAAGTGATATTCTAGTGATATTCTCCT----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------AAACTTGCTT-AAAG ------AACTATTTAAATGTTTGTGTCC----CCTCAAAATCCATATATTGAAATCCTAACACCCCAGTGTGACGGTATT AAGAGGCAGGACTCTT-GGAGGTGCTTAGGTC-ATGAGGGTGAAGCCCCTATGAATG----GGATTAGTGCCCTT----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------ATAAAGGAGGCCTCAGAGAGCTTGCTTGCCCC-TCTACCATGTGAAGACACAGAGAGAAGG------CTACA AACCTGGAAGTGGGGCCTTATCAGCCACTATAGTGAATCTGCCTGCACCATGAC--------TCCCAGCCTCCAGA-CTG TATAAAATAAATGTTTGCTGTTTTTAAGCTATCCAGTCTGAGG------------------TAGCTTGTTA--------- --ACCAACTAAGACA---GGTAGTAAAATAAAAATAAAAAATGTTATCACAAAAATGATA-TCT---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------AGGGG-CCTCTTAAATTTGCTCAAAG---AAACTAAC AAATTTCCTATTTT------------------------------------------------------------------ -------------------------------------------------------------------------------- ------------------------------------AAGGAGATTCCAGAATTAAGA-GTCTGTCCAA >Rousettus_aegyptiacus -TGAATACCCCAAGAGATAGATTTTGGTGTTTGTTAAAATAAGACTAACAACAACAACAAAAAAGATCAA-ATACAAG-- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------TAGTCAAGAAAATGTTATCTCGAAAGTGATATTCTAGGGG---CCTCCT----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------AAATTTGCTTAAAAG ------TGTGGTCAAAATGTTTGTGTTC----CTGCAAAATTCATATGTTGGAATCCTAATGCCCCGAAGCGAGGGAGTG AGGAAGCAGGGCCTTTGGGAAGGGCTTAGGTT-GTGAGGGTGGAGCCCTCATGAAAGGCATGAATTAGTGCCTTT----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------ATAAAGAAGGCCCCAAAGAGCCTGCTTGCCCCTTCACCTATG---AGACACAGAGAGAAGG------CTATG AACCTGGAAGTGGGCCCTCATCCGCCATTACACCAAA-CTGGCTGCACCATGACCTTGGACTTCTCAGCCTCCAGA-CTG TGTGGGATGAATGTCT--TGTTTTTAAGCTATCCAGCCCATGG------------------TATTCTGTCATAGCAGCCT AAACAGACTAAGACA---TGTAGAAA---------AGAAAACGTTATCACAAAAATGATAGTCT---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------TAAATTTGCTCAAAG---AAACTCAT ATGTTCCCTTTTTTC----------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------AAGGAAGTTCTAAAATTAAAA-GACTGTCCAA >Canis_familiaris -TGAACAACCCAAGGGATAAGTTTTAGTTTTTGT-A-AAGAAGACT------------AACAAAGGTCGA-ATACATTT- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------GGTAGTCA---------AGAAAATG---TCACAAAGGTGATATTCT---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------AGGGG-CCTCCTAAATTTGCTAGAAG---AAACTCAC AAATTTTCTTTTCTTTG--------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------AGGAGGTTTTCAGAATTAAAA-GACTGTCCAA >Felis_catus -TGAACAACCCAAGAGATAGGTTCTAGTTTTTGTAA-AAGACGACT------------AACAAAGGTTAA-ACACATTA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------GGTAGTGA---------AGAAAATGTTATCATAAAAGTGATATTCT---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------AGGGA-CCTCCTAAATTTGCTCAAAG---AAACTCAC AAATT---TTTTTCCGAGGAGGTTCCAGAACTAA---------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------AAGAAGGTTCCAGAACTAAAA-GACTG-CCAA >Manis_javanica -CGCGCAACCCAAGAGATAGGTT--------------AAAAAGACTAGCA--------AACAAAGGTCAA-ATACATTA- --GT---------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------TAGTAAAGAAAGTAGTATTGCATAAG-GATATTCTAGGGT---CCTCCT----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------AAATTTGCTT-AAAG ------TATGGTGTAAATGTTTGTGTCCCTCACTCCAAAATTCCTATGTTGAAATCCTAATG-CTCAGTGGGATGGTATT AGGAGGCAGGGCCTTTGGGAGGCTT--------CAAAGGGTCAAGCCCTTATGACTG----GGTATAGTGCCTTTAAGAA GAAGGACCCATGTGTGTCCCTCCCGAAGCTGCGCGCTCGGTCGAAGAGGACGACCTTCCCCGATAGAGGAGNGAAGAGGA CGACCTTCCCCGATAGAGGAGGACCGTTCTTCGGTCAAGGGTATACGAGTAGCTGCGCTCCCCTGCTAGAACCTCCAAAC AAGCTCTCAAGAAGAAGGCCCCAGAGAGCTTGCAGGCCCCTCCAACCATGTGAAGACACAGCAGAGAAG-------TCTG AACCAGCAAATGGGTTCTTTCCAGCTACTACACTGAATCTGCCAGGATCACGATCTTGGACTTCC-AGCCTCTCAA-TTG TGAGAAACAAATGTCTTTTGTTTATACGCTATCCAGTCTGTGG------------------TATTTTGATATAGCAGCCG GAATAGACAAAAACA---GGTGGGAA---------AAAAAATATTATCACAAAAATGATATTCT---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------AGGGGGTCTCCTAAATTTGTTCAAAG---AAACTCAT AAATTCCCTCTTTTC----------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------GAGAAGGTTCTAGAATTAAAA-GACTGTCCAA >Condylura_cristata -TGAAT----CAAGAGATAGGTTTTGGTTTTTGTAA-AAGATAGCTAAAA--------AGCCCTGGCCAA-ATACATTA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------GGGAGCAA---------AGAAA--GTTTTCATAAAAATGAAATTCT---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------AGCGG-CCTCCTAAATTTGCTCAAAG---AAG-TCAA AAAAATTAATTCTTCTA--------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------ATGGAAGTTTCAGAATTAAAAAAATTACCTAA >Sorex_araneus -TGAGCAATCTGAGAGGTTGAA------------------------------------AGCAGCTGTCACTTTGCATTA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------GATAGCAAA--------AGATGTTATTTTCACAAAATCAATAGTCC---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------AAGGG-TCTCCTAAATTTGCTCAGAG---AAACTCAC AGACTCTCCTTTTTC----------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------AAGGAGGTTCCAGAATTCAAA-----GTTCAA >Homo_sapiens -TGAGCAACCCAAGAGATAGGTTTTGTTTTTTGTAAAAAGAA----------------GACAAAGGTCAA-ACACATTA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------GGTAGTAA---------AGAAAATTTTATTACAAAAATGTTATTCT---------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------AGGGG-CCTCCTAAATTTGCTCAAAT---AAACT-AA AAAAATCATTTTTTC----------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------GGGGAAGTTTTAAAGTTAAAA-GACTTTGCAA Pig59_LINE >L1MA9_3END ---------------------------------------------------------------------------AAGTT TCAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGTACAGCATGGTGACTATAGTTAATAATACTGTATT------G TATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCACCACACACAAAAAAATGGTAACTATGTGAGGTGATGG ATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATAT ATACAATTTTTATTTGTCAATTATACCTCAAT----AAAGCTGGAAAAA------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------- >Sus_scrofa GTGTGTTCAGTAAACAATAGGCATTATTATCCTAGCACATTAGCTATCCATC---AAGAACCTATGTAGCTT-------- CCAGTTAT--AAAATAAATAAGTCCTGGGGATGTGATATATAGCATGGTGACTATAGTTAT---------ATT------G TATATTTGAAAGTTGTTAAGAAAGTAGATCTTCAAAGTTCTCAGTGCAAGAAAAAAAATTGTGAC--TGTGTGATGATGG --TTGTTAACTAGACTTATTGTGGTGATCAT-----AATATAGACAAATATCAAATCATGAAACTGTACACCTGAAGCTA ATATAATGCTATATGTCCATTAGTATCTCATTTTTTAAAA------------AAGAAGTTAT----GTAGTT-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------T---AA AACCTATGCAAAACTAAGCGA-GAGAGATGATGTTTCTGC---AATTTGTCA >Tursiops_truncatus GTGTGTTCGATGAACAATAGTCACTGTTATCCTATCACAATAGCTATCCATT---AAGAACCTATGTAGCTT-------- CCAGTTAT--AAAATAAATAAGTCCTGGGGATGTGATGTACAGCACGGTGACTATAGTTAT---------ATC------G TATGTTTGAAAATTGCTAAGAAAGTAGATCTTAACAGTTCTCATTGCAAGAAAAAAAATGG-GACTATGTGTGGTGATGA --ATGTTAACTGGACTTATTGTGGTGATCATTTTGCAATATAGACAAATATCAAATCATTATATTGTACACCTGAAACTA ATATAATGTTATATGTCAAATAATATCTCA--ATTTAAAA------------ATGAACCTAT----GTATTTAAAAACCT ATGCAGGGGCTTCCCTGGTGGCGCAGTGGTTGAGAGTCTGCCTGCCGATGCAGGGGACATGGGTACGTGCCCCGGTCCGG GAAGATCCCACATGCCGCGGAGCGGCTGGGCCCGTGAACCATGGCTGCTGAGCCTGCGCGTCCGGAGCCTGTGCTCCGCA ACGGGAGAGGCCACAACAGTGAGAGGCCCGCGTACCGCAAAACAAACAAACAAACAAAAAAAAAAAAACGAAAAA---AA AACCTATGCAAAACTAAGCAAGGAGAGATGATGTTCCTGC---AATTTATCA >Myotis_myotis GTGTATTCAGTAAATAATAGCCATTATTATCATATCACAATAGCTATCCATT---AAGAACCTATGTAGCTT-------- CCAACTGT--AATATAAATAAGT--------------------TATGGTGACTATAGTTAATAATATTGCATTGTACTAG TATATTTTAAAGTTGCTAATAGAATAGAGCTTAACAATTCTTATTACAATAAAAAATAT---AACTATGTATGGTGATG- --ATGTTAACTAGAC-----------ATCATTTCATAATATATACAAATATTGAATGATTATGTGGTATACTTGAAATTA ATAT-----TATATGTCAATTAGTATCTCAATTTAAAAA-------------AATAACCTAC----ATAGTT-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------T---AA AAC--ATAAAAAATGAAGGAAGTAGGAATTGTGTTCCTGC---AATTTAAAA >Rousettus_aegyptiacus AGG--TTCAATAAACAATAGCCATTATTATCATATCACAATAGCTATCTATT---AAGAATCTATGTAGCTT-------- CTAGTTGT--AATATAAATAAGTCATGGGGATATAATGTACAGCATGGTGACTATATTTAATAATACTGTACC------A TATATTTGAAAATTGCT--GAGAGTAGATCTTAACAGTTCTCATCACTAGAAAAAAATCTGTAAC----TGTGATAATGG --ATCTGAACTAGACTTATTTTGGTAACCATTTCACAATATATACAAATATAAAATCATTATGTTGTGCACCTGAAATTG TTATG-----------TCAACTATATCTCAATTTTAAAAACT----------AAGAATCTAC----ATAGTT-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------T---AA AATCTATGTAAAACTAAGCAAAGAGAGATTATGTTCCTAT---AATTCATTA >Canis_familiaris ATGTGTTCCATAAACAAGAGCCATTATAATCATATCACCACAGCCATCTGTT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------AAGAACCTAT----GTAGTT-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------T---AA AGCCAATGCAATACTGTACAAGGAGAGATTATATTCCTGC---AATGCATCA >Felis_catus GTGTGTTCAATAAATGATAGCCATTATAATCATATCACCATAGCCATCTGTT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------AAGAACCTAT----GTAGTT-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------T---AA AGCCAATGCAATACCAAACAAGGAGAGATTATGTTCCTGC---AATTTATCA >Manis_javanica GTGTGTTCAGTAA---ATAGCCATTATTATCATATCATCATAGCCATCTGTT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------AAGAACTTATTTATGTAGTT-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------T---AA TACCAAGGCAAAACTAA-CAAGGAGAGATGATGTTCCTGC---AAATTATCA >Equus_caballus GTGTGTTAAATAAACAAGAGCCGTTATTATCATATCACAATAGCCATCTGTT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------AAGAAACTAT----GTAGTT-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------T---AA AACTTACGCAAAACTAAGCCAGGAGAGACTGTGTTTCTGC---AATTTATCA >Ceratotherium_simum GTATGTTAAATAAACAATAGCCATTATTATCATATCACAGTAGCCATCCGTT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------AAGAAACTAT----GTAGTT-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------T---AA AACTTATGCAAAACTAAGCAAGGAGAGACTATGTTTCTGC---AATTTATCA >Condylura_cristata GTG--TTCAATAA------------------------CAACAGCCATCCTTG---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------CAGGACCTGT----GCAGTT-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------T---AA AACCTTTGCGAAACTAAAC----AGAGACGATGCTCCTGCTGAAATTGAGGG >Sorex_araneus ATGTGTTCAGTAAACAAAACCCATTGTGA---TATCACAATACCCTACTGTT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------ACGATCCTAT----GCATTT-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------T---AA ATCCTGTGAAAAACTAAGCAATGATAGACCACACTCCTGC---AATTATTCA >Homo_sapiens GTGTATTCAATAAACAACAGCCATT---ATCATATCACATTGGCTATCCATC---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------AAGAACTTAT----GTAATT-------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------------T---AA AACCTATGCAAAGCTAAAT-------GATTATGTTCCTGC---AATTTACTC Pig84_LINE >L1MA9_3END -------------------------------------------------------------------------------- ------------------------------------TTTTTCCAGCTTT------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------ATTGA GGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATATACGTATACATTGTGAAATGA TTACCAC------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------AATCAAGCTAATTAACATATCCATCACCTC-ACATAGTTACCATTTTTTTGTG------------------ ----------------------------------------------- >Canis_familiaris CCTCCCTGCCTT---CACTCAGTCAATCACCAAGGCTTTAAGCCAGTTCCCCTCCTTGCTCCT---CTCCTCCCTCCTGG ACACCACCATCATCGTCCTCATTGTCATCGTTGTCATCTTGTTCTTTTTAAAGAAACTGACTAGTTA------------- ----CAATTTTAAA------------------------------------------------------------------ -------------------------------------------------------------------------------- ---------------------------------------------------------------------------ATTTA GATATAGTTGACATGT-AACACTCTACTAGTTTAAAGTATACAGCATAATGATTTGATATTTGCATATATTGCGAAAGAA TCACCAC------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------AAGAAGTCTGGCTAGC--TTCCACCACCACTGCAGAGTC-----------------ACCTTGACTTTCCAG ATCTGG--CCCCTTCCTCTCTGTCCCAAAGCCAACCTCTGGGTTCAG >Felis_catus CCTCCCTGCCTTCTCCACCCAGTCAGTCACCAAAGCTT----CTGAGCCCGCTCCCCACTCCC----------------- -----------------AGACATGGT-CTTTTTTTTTTTTTTTTTTTTTAGAGAAACTGATTAGTCAATATTTAAAAAAA CAATTTTTTTTTAACATTTATTTATTTTTGAGACAGAGAGAGAGAGAGAGAGCATGAACAGGGGACGGTCAGAGAAAGAG GGAGACACAGAATCTGAAACAGGCTCCAGGCTCTGAGCTGTCAGCACAGAGCCCGACGCGGGGCTCGAACTCACGGACCG CGAGATCATGACCTGAGCCAAAGTCGGACCCTTAACCCACTGAGCCACCCAGCCGCCCCTAGTTAATATTTTTAAACTGA GAGACAGTTGACATAG-AACATTCTATTAGTTTAAGGTGTACAGCACAGTGATTTGATATTTGCATATATTACGAAACGA TCACCAC------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------CGTAAGTCTGGGTAAC--TTCCGCCACCACCGCAGCGTT-----------------ACCCTGACTTTGCAG ATCTGGACCCTCCTCT---CCACCCGAAAGTCAACCTCTTGGCACTG >Manis_javanica CCTCACTGCCTT---CACCCAGTCAATCACT-AGGCTC---CTGGAGTCCACCCCCAGACCCT----------------- --------------------------------------ACCTTTTCTTTAAGGAAACAAGCTGA---------------- -------TTTTTTAA----------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------------------------ATTGA GATATAACCGACATAT-AACACTGTATTAGTTCAAGGTGTACAACATAATGATTTGCTCTATGTGTACATTGTAAAATGA TCACTAC------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------CATAAGTCTAGTTAATGCATACA---CCAC-ACACAGGT-----------------ATCTTGAATCCCCTG GTCTGGTCCCCCTTCTTTCT-CCCTTGCAGCCAACGTCTTGGTTCAG >Sus_scrofa CCTCACTGCCTT---CCTCCCATCGGTCATCAAGGCTC---ACGGAGTCCACTCCACATCCCT----------------- ----------------------------------CTTTTTTTCTTTTTTAAGGAAACAGATT------------------ -------TTTTTTA------------------------------------------------------------------ -------------------------------------------------------------------------------- ---------------------------------------------------------------------------ACTGA AACATCATTGACATAT-AACACTGTGCAAGTTTAAGCTATACAACATAATGACTTGATATACACAAATACTATGACGTGA TCACCAC------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------AATAAGGTCAGTTAAT--ATCCATTGCCAC-AC--AGTC-----------------ATCTTGAATCCCTGT GTCCAG-TCCCCTTCTTTCTATCCCCACGGCCACCGGCTTGGTTCAG >Tursiops_truncatus CCTCACTGCTTT---CACCCCATCAATGGCCAAGGCTC---ACCGAGTCCACTCTTGGTCCCT----------------- -----------------------------ACCCCCTTTTTATTTTATTGGAGGAAACTGATTAA---------------- -------TTTTTAA------------------------------------------------------------------ -------------------------------------------------------------------------------- ---------------------------------------------------------------------------ATTGA GACAAAATTTACATAT-AGCATTGTGCAAGTTTAAGGTGTACAACATAATGA-TTGATATATGTAAATATTGGGAAGTGA TCACCACAGTAAGATTAGTTAGGGACTTCCCTGGTGGTCCAGTGGGTAAGACTCCACGCTCCCAGTGCAGGGGCCCCGGG TTCGATCACTGGTCAGGGAACTAGATCCCGCATGCATGCCACAGCTAAGAGTCCACATGCCACAACTAAAGATCCTGCGT GCCACAACTAAGACCTGGCGCAGCCAGAATAAATAAATAAATATTACACACACACACACACACACACACACACACACACA CACACACAAAATAAGATTAGTTAAC--ATCCATCACCAC-AC--AGTT-----------------ATCTTGAATCTCCAT GTCTCGTCTCCCTTCTTTCTACCCCCGCAGCCACCGTCTTGGTTTAA >Miniopterus_natalensis -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------ACACTGTATTTGTTTAAGGTGTACAACACAATTATCTGCTATCTGCACATAATGTGAAATGA TCACCAG------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------TGAGCCTGGTTAAC--ACCCACCACCAC-TCATAACT-----------------ATCTGGAGTCTCCAT GTCTCG-CCCCCTTTTTTCTGTCCCCACAGCCAGCATCTCAGTTCAG >Pteropus_vampyrus CCTCCCTGCCTT---CACCCAATCAATTACCAAGGCTT---ATGGAATCCACTTTTGCACCCT----------------- ------------------------------ATCTTTTTTTGTGGGGGAGAAGAAAACTGATTAAC--------------- -------TTTTTAA------------------------------------------------------------------ -------------------------------------------------------------------------------- ---------------------------------------------------------------------------ATTGA GATATAATTGACATAC-AACATTGTATTAGTTTAAGGTGTACAACATGATGATTTGCCGTATGTGTATAATGTGAAATGA TTACCAC------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------AATAAGTTTGGTTAAC--ATCCATCAACAC-ACA-AGTT-----------------ATCTTGAATCTCCAT GTCTCGTCCCCCTTCTTTCTATCCCCGCAGCCAACACCTTAGCTCAG >Equus_caballus CCTCACTGCCTT---CACCCAATC----ACCAGGGCTT---ACTGAGTCCACTCCCGGAACCC----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------ATCTTGAATCCCCAT GTCTCGTCGCCCTTCCTCCTGTCCCCACAGTCAACATCTCGGTTCAG >Ceratotherium_simum CCTCACTGCCTT---CACCCAATC----ACCAAGGCTT---ACTAAGTCCACTTCCGGAAACT----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------ATCTTGAATCTCCAT GTCTATTCCCCCTTCTTTCCATCCCCGCAGCCAACGTCTTGGTTCAG >Scalopus_aquaticus TGCCACAGCCTC---------------CATGGAGGCTC---ATGGAGTGTCCTCCAGGGCCCT----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------CTCCTGAATCTCTGT GCCTCA-CCCACATCT------------------CCTCTTGGTTCAG >Sorex_araneus CCGCACGGCCTT---CCCCCAGCCCATCAC--AGGCTC--------ATCCACTCTGGGATGCC----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------ATCCTGAATC-CCAG GCCTCACGCCCTTTCT------------------CTCCTTGGTTGAG >Homo_sapiens CTACACTCCCTT---CACCCAGTCAGTCACTGAGGCTT---ACTGAGTCCACTCCCAGAACCC----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------ATCTCGAATCTTCAT GTCTCA-TCTCCCTCTTACTATCCCTGCAGCCTATGTCTTAGTTCAA Pig128_LINE >L1MA9_3END ------------------------------------------------------------------------TTTTTCCA GCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTGATGTTTTGATATACGTATACAT TGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCACATAGTTACCATTTTTTTGT-GTGTGGTGAGA ACACTTAAGATCTACTCTCTTAGCAAATTTCAAGTATACAATACAGTATTATTAACTATAGTCACCATGCTGTAC---AT TAGATCTCCAGAACTTATTCATCCTGCAT--------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------- >Canis_familiaris TCATTCTGACTATATGAGAAATTGACAATATCTTATAAGTGATAAAAATA----T----AGC-TTTTTT----------- --------GAGGTATATTTGAC------ATATTATATTCATTTCAGGTATAAAGCATAATGATTTGATATTTGTATATAT TGTAAAATGACCACCACAGGAAGCCTAGTTAAC--ATCTATCATTATACATAGTTTAAACATTTTTTTCTTGTGATGAGA ACTTTTAAGATCCATTCTCTTAGCAATTTTCAAATGTGCAATACTTTATTATAAACCATAGTCACCATGGTTTAC---AT TATATTCCTATGAA------------------TTCAGGAGTTATTTT------G--TACTTAAAA---TAATCTAATAG- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------CA--GAAAAA----CTTAC-------- ACTGGAAGATGTTATTAGTATATCTGTTTTAGCCAAAA-----TATAATAATCTATTTTAACC-AAAAAAA >Felis_catus TCATTC----TGCATGAGAGTTTGACAATATCTTATAAGTCATAAAAATA----TCCATTGCTTTTTTT----------- --------GAGGTATATTTGAC------ATATTATATTCATTACAGATATATAGTATAACGATTTGATATTTATATATAT TGTAAAATTACCAGCACAGTAAGCCTAGTTAAC--ATCTGTCACCATACATAGTTTAAAAAATTTTTTCTTGTGCTGAGA CTTCTTGAGATTTACTCTCTTAGCAATTTTAAAATATGCGATACAGTATTATTAACTACAGTCATCATGCTATAC---AT TACATCCATATGAC------------------TTTAGAGGTTATTTT------G--CACTTAAAA---TAATCTACTAGT TGGGGCACCTCGGTGGCTCAGTGGGTTAAGCATCTGACTTCGGCTCAGGTCATGATCTCGCAGTCCTTGAGTTCGAGCCC TGTGTCGGGCTCTGTGCTGACAGCTCAGAGCCTGAAGCCTGTTTCAGATTCTGTGTCTCCCTCTCTCTCTGACCCTCCCC CGTTCATGTTCTGTCTCTCTCTGTCTCAAAAATAAATAAATGCTAAAAAAAATTAAAAAAAAATCTGCTAGCAGAAAAAC TTATGAAGATGTTATTAGTATATCTATTTTAGCCAAAATATAATAGTATAATCTATTTTAGCC-AAAAAAC >Manis_javanica TTATTCTGACTGTGTGAGAGTATGACAATATTTTGTAAGTTATAAAAATA---TTACATAGTTTTTCTG----------- --------GAGGTAAAATTGAC------ATATT-----TATTCCAGGTATACAATGTAATGATTTGATATTTGTATATAT TGTGAAATGATCACCACACTAAGTCTAGTTAAT--ATCTCTTACTATACATAGTTAAAAAATTTTTTTCTTGTGATGAGA ACT--TAAGATTTACTATCTTAGCAACTTTCAAATATACAATATAATGTTACTAACTATAGACACCATTCTGTACATTAT TACATCCTTATAAC------------------TGCATAGGATTTTTTTTT---G--TACTTAAAAAAATAATCTACTAG- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------CAG-AAAAANNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Sus_scrofa TCATTCTGATTGTATGAGAGTATGACAATACTTTTAAAGTTATAAAAATA----TTCATAGCTTTTTTT----------- --------GAAGTAAAATTGACATAT-AGCATTATATTAGTCTCAGACCTACAACATAATAATTCCATATTTGTATATAT TGCAGAATGAGCACCACAGTGAGTTTAGTTAAT--GTCTGTTACCATATATAGTTAAAACTTTTTCTTCATGTAATAAGA ACTCTGAAGATTTACTCTCTTAGCAACTTGCAAGTTTGCAACACAGTATTATTAACAATTGTCACCATGCCATAC---CT TATATCCTCATGAC------------------TTTGTGGGGTTTTTT------G--CACTTAAAA---TAATCTACTAG- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------CAT-GGGAAA----CTTTC-------- ------ACATG--------------------------------TAGTGTGATCTATTTTAGCC-AAAAAAT >Bos_taurus TCATTCAGATTG----AGATTATGAC---ATTTTAAAAGTTATAAAAATA----TTCATAG---TTTTT----------- --------GAGGCACAGTTGAT------ATATAACATTAATTTCTCATATACAACATAATAATTCTATATTTGTGTCTAT TACAGAATGATCACCACATTAAGTCTACTTAAC--ATCTGTTACCATAGATAGTTAAAATTTTTTCTTCATGTGATG-GA GTGTTTAAGATTCA--CTCTTAGCAACTTTCAAATTTACTAC----TATTTTAAACTATAATCACCATGCTATAC---CT TAC-TCCCTATGAC------------------TTTGTAGTTTTTTCA------A--CACTT--------AACCTCCTTG- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------CAC--AGAAA----TGTAT------GC ACAGAAAGATGCTATTG--------------------------CACTATAATCTATATTAGCC-ACAAGAT >Equus_caballus TCATTCTGGCTGTATGAGAGTATGACAATATTTTATAAGTTATAAAAATA------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------CTCATAGTTTTTTTT------GGGCACTTAAAA---TAATCTAGTAG- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------CAG-AAAAAA----CTTAC------CC GTACTAAGATGTTACTG--------------------------TAGTATAATCTATTTTAGTT-AAAAAAT >Tapirus_indicus TCATTCTGGCTGTATGAGAGTATGACAATATTTTATAAATTATAAAAATA------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------TTCATAGGTTTTTTT------G--CACTTAAAA---TAATCTAATAG- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------CAGAAAAAAA----CTTAC------CT GCACAAAGATGTTATTG--------------------------TAGTGTAATCTATTTTAGCCGAAAAAAT >Myotis_myotis TCATTTTGGGTGCATGAGACTATGACAATATTTTAT--GTTATAAATATA------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------TTCATAGCTTTTTTT------G--CACTTAAAA----AATCTACTCA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------CAG-GAAAAG----CTTAT------AT GCAAAAACATGTTATTG--------------------------TTGTATAATCTATTTTAGCC-AAAATAT >Rousettus_aegyptiacus TCATTCTGGCTGCATGAGAATGTGATAGTGTTTT----GTTATAAAATTA------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------TTCATAGCTTTTTC-------G--CACTTAAAA---TAATCTAG---- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------CAGAAAAAAA----CTTAC------AT TAGAAAAGATG--------------------------------------------TTTTAGCC-CAATTAT >Condylura_cristata TCATTTTGGCTG--------TATGCCAGCATTTTAAA---TATAAATATA------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------TTCACAGCTTTTTT-------G--TAACTCAGA---TTATCTATTAG- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------TAA-AACAAA----CT----------- -------------------------------------------TATAACAACTTAT--------AAAAAGT >Scalopus_aquaticus TCATTCTTGCTG--------TATGACAGTATTTTATAAGTTATAAATATA------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------GTCACAGTTTTTTT-------A--TACTTCAGA---TTATTAGCAAA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------AAA----CTTGC-------- ---AAAAATTGTTATAG--------------------------TATTATCATCAATTTTAGTT--AAAAAT >Homo_sapiens TCATTATGGTTGTGTGAGAGTATAAC---ACTTTAT--GTTATAAAAATA------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------TTTATAACCTTTTTT------G--CCCTTAAAA---TAATCTACTAG- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------CT--GAAAAG----CTTTC-----CAC ACACAAAGGTAATATTA--------------------------TAGTATAATCTATTTTAGCC-AAAAAAT Pig133_LINE >L1MA9_3END -------------------------------------------------------------------------------- --------------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGT-ATATATTTAAGGTGTACAACGT GATGTTTTGATATACGTATACATTGTGAAATGATTACCACA-----ATCAAGCTAATTAACATATCCATCACCTCAC--- ----------------------------------------------------------------------------- >Canis_familiaris GAG-TTCCTACTTGATTTACTGGTTTGGGTATTTGGGTATTTATGATATTC--------------TTC---TTGAGAGAA TACTGTCTT---TCTTTTTTCAGCTTTACTGAGGGATAATTGACTAAT-AAAATGGTGATATATTTAAAATTTAATTCAT AGTGATTTTATATAAGTATACATTGAGAAAGGATTCTCACC-----ATTGGGTTAATTTACACATCCA------------ TTATGGACAGACACTGTCTT---GATAAGCTACTCAAGGACTGGAATTCTGTCTCTGAACCACA--GCCCTATAGCT >Felis_catus GAG-TCTCTACTTGATTCACTGGTTTGGGTATTTGGGTGTTTATGATATTC--------------TTC---TTGAGAG-A TACTGTGTT-----TTTTTCTGACTTCATTGAGGTATAGTTGACTAAT-AAAATTGTGATATATTTAAA-TCTTCAACAT GGTGACTTGATACATGTACACATTGTGAAAGGATTCTCACC-----ACTGAGTCA------------------------- TTACAGAGAGAGACAGTCTT---CATAACCTACCCAAGGACTGGAATTCTGTCTCTGAACCACA--GCATCGTAGCT >Manis_javanica AAG-TCCCCACTTGATTCATTGGTTTGGGCATTTGTTTG-TTATG----------------------------------A TACTGTCTC----TTTTTTTCAGTTTTTCTGAAGTATAATTGAC-----AAAGTTATAATATACTTAAAGTTTACAACAG GATGGTTTGATACA--TATACTTTGTGAAGTAATTCCCACCGGCTAGGCTAGTTAATTAACATACCCA------------ TTACTGAGACAGACTGTCTT---GATCACCTACTTAAGGACCAGAAGACTGTCTCTGAACCATA--GCCCTGTAGCG >Sus_scrofa CAG-TCCCCACTTGAGTCACTGGTTTGGGGATTTGGGTGTTTATGACA-----------------TTC---TTGAGAG-A CACTGTCTT---TGTTTTTTCAGCTTTATTGAGGTATAATCAAC-----AAAACTGTAATATATTTAAAGTTTA-AACAT GATGATTTGATATATGTGTACATAATGAAAGGATTCCCACC-----ATTGAGTTAATTAACACATCCA------------ TTATGAAGA----ATGTCTT---GTTAACCTACCCAAGACCTGGAATCCTGGCTCTGAACCATT--GCACTGTAGCT >Tursiops_truncatus AAGTTCCCCTCTTGAGTCACTGGTTTGGGTACTTTGGTGTTTATGACATTC--------------TTC---TTGAGAG-A TACTGTCTT------CTTTTCAGATTTGATGATGTATAAATGAC-----AAAACTGTAATATACTTAAAGTTTACAACAT GATGATTTGATATATGTATACATCGTGAAAGGATGCCCACC-----ATGGAGTTA-TTAACACATTCA------------ TTACGGAGA----CTGTCTT---GTTAACCTGCCCAAGGACTGGAATCCT--CTCCGAACCAGA--GCACTGTAGCT >Equus_caballus GAG-TCCCCAATTGGCTCACTTGTTTGAATAATTGGGTATTTATGATATTC--------------TTT------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- TTT-AGAGAGA--CTGTCTT---GATAACCTACCCAAGAGCTGTAATCTTATTTCTGAACCATA--GCACTATAGCT >Ceratotherium_simum GAG-TCCCCACTTGGCTCACTGGTTTGGATATTTGGGTGTTTATGATATTC--------------TTT------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- TTG-AGAGAGA--CTGTCTT---GATAACCTACCCAAGGACTAGAATCCTGTCTCTGAACCATA--GCACTGTAGCT >Myotis_myotis GAG-TCCCCACTTGGTTCACTGTTTTGGGTATTTGGGTGTTTACAATATTA--------------TTC------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- TTG-AGAAA----CTGTCTT---AATAACCCACCAAAGGACTGGAAGTCTATCTCTGAATCATA--ACACTGTAGCT >Rhinolophus_ferrumequinum GAA-TGCCCACTTGATTCATTGTTTTGAGTATTTGGATGTTTATGATATTC--------------TTC------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- CTG-GGAGA----TTGTCTT---GATAACCTACCAAAAGACTACAATCCCATCTCTGAACCATATGGCATTGTAGCT >Crocidura_indochinensis GAA-ATTCTATTTGGTTTACTTTTAAAGGTAATAGGTTGTCCATGATA--------ATCTTTATAATC------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------T TTG-AGAGAGA--GTACCTT---AATTGTCTACCTAAGAGCTAGAATCTGGTCTCTATATTACA--GCATTATGGCT >Sorex_araneus TAAGATTCCACTTGGTTTGCTTGTAAAAGTA-TTGGGTATCTATGATGATCTATTTTTAAAACAATTT------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- TTG-AGAGAGA--CTACCTT---AATAAATTATTCAAGCTCTGGAATCCTGCTTCTACCTGATA--GCAGTATC-CA >Homo_sapiens GAA-TCTCCAGTTGGTTTGCTGGTTTGGGCATTTGAATGCTTATGATA-----------------TTC------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- TTG-AGAGAGAGTCTGTCTC---AGTAACCTATTTAAGGGATGGAATCTTGTCACTCAACCAGA--GCACTGTAGCT Pig144_LINE >L1MA9_3END -------------------------------------------------------------------------------- -AAAAAATGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATAT CAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA------ -------------------------------------------------------------------------------- --------------------------------------- >Sus_scrofa GGAGAG-------TCTAC-T-GAAGTCCCTTGCAAACTCAAAGGGACCCCCCAC---A--TAGAAGGAAGGAGGTCTT-- -----------AACTATGCATGGTGACAG--ATGTTAACTAATTT-------GTATACATTTCCCAGTGTATACAAATAT CAAAGCATTTTGTTGTACACTTGAAACTAATATAA-TGCCTTATGTCAATTATTCTTCAATAGA-------------AAA AAAAGAAGGAGGAAGT---GGGAGTGGAGGAGG----------AGGGTGGAGCTGTGGG-GGTGACAGAGCAGGGAGG-- -GGAAACCCCACCCCACCCC--CAATTC--CCTCACCTG >Tursiops_truncatus GGAGA-------------------GTCCCTTGCAAATCCAAAGGGACCCTCCCC---ACCAGGAAGGAAGGAGGTGGT-- -----------AACTATGCATGGTGACAG--ATGTTAACTAATTT-------GTAGACATTTCACAGTGTATACAAATAT GGAATCGTTATGTTGTATACTGGAAACTGACATAA-GGTTATATGTCAATTACGTTTCAATAAAAAAAAAAAG----GAA GGAGTGGGAGTGAAGC----AGGGTGGA-----------------------GCTGTGGGAGGTGACATGAGTGGGGAG-G GGCAATCCCCACTCCCACCCT-CAGTTC--CCTCACTTG >Equus_caballus GGAGATTCAAAGTTCTAC-T-AACATCCCTTTCAAACCCAGAGGAACCCTGC-----A--AAGAAGGAAGGAGGTTGT-- -----------AACCACGCATAGTGACAG--ATGTTAACCAAACTTATTGTGGTGATCATTTCACAATGTATCTAAACAT CGAATCATTATGTTGTACACTTGAAACTAATATGA-TGTTATATGTCAAT-ATACTTCAATAAAAAAGAA---------G GAA-------AGAAGT-------------------------------------TGTGGG-GGTGACAAGAGTGGGGAG-G AGGAAGCCCCACCCCATCCCT-CAATTC--TCTCACCTG >Tapirus_indicus GGAGATCCAAAGTTCTAC-T-AATGTCCCTTGCAAACCCAGAGGAACCCTGC-----A--AAGAAGGAAGGAGGTTGT-- -----------AACTATGTACAGTGACAG--ATGTTGACTCGACTTATTGTGGTGATCATTTCACAATGCATATAAATAT CAAATCAGTATGTTGTACGCCTGGAACTAATATAA-TGTTATATGTCAATCATGCTTCAATTAAAAAAAAAG-----AAG GAA-------AGAAGT-------------------------------------TGTGGGGGGTGACAGGAGTGGGGAG-G AGCAATCCCCACCCCACCCCT-CAATTC--CCTCACCTG >Canis_familiaris AGGGATTCAAAGTTCTAC-T-AATGTCCTTTTCAA-TCCAAAGAAAGCCTAC---------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------AAA GAAGGAAGAAGGGTGT---GGGAGTGGA-----------------------GCTGTGGG-GGTAATAGGGGTGAGAAGGG GGGCATCTCCAACCCC------TTGCCC--CCCTATCTG >Felis_catus GGAGATTCAAAGTTCTCC-T-AATGTCCCTTTCAA-CCCGAAGAAAGCCTGC---------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------AAA GAAGGAAGGAGGGAAT---AGGGGAGGA-----------------------GCTGTGGG-GGTGACAGGAGAGAGGAG-G GGGCATCTCCAGCCCATCCTC-CAATTC--CCCCACCTG >Manis_javanica GGAGATTCAAAGTTCTAG-G-AATCTCCTTT-------CAATTGAACCCTAC---------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------AAA GAAGGAAGAAGGGAGG---AGGG-TGGA-----------------------GCTGTGGG-GGTGACAGGAAGAGGGAG-G GGGCATCCCCC-----------CAATTC--CCTCACCTA >Myotis_myotis GGAGAACCAAATTTCTAC-T-CAAGTCCCTTTCAAGCCTCCAGGAACCCTGC---------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------------AGAG GAAGGAGGGAGGGAGT---GGGGGTGGATGAGG----------AGAGGAAAACTGGAGG-TGCGGCAGGAGCCGCAGG-G -GCGATCCCCACTCCACCCC--CAATTC--CCTCACCTG >Rousettus_aegyptiacus GGAGATTCAAAGTTTGAT-T-AATGTCCCTTTCAAACCCAAAGGAACCCTGC---------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------AAA GAAGGAAGGAGGAAGT---GGGG-TGGGGGGAG----------AGGGGGAAACAGTGGA-GGTTACAAGAGCGGAAGG-G -GGCATTCCCGCCCCACCCC--CAATTC--CCTCACCTG >Condylura_cristata GGTGATTCACAGTTCTACTT-AATGTCCTTTGCAAACCCCAAGAAACCCTAT---------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------AAG GAAGGGAGGAGAAGGT---GGGAGTAGGTTAGAGGTT---------------------G-GGTAGCAGGAAGGGGATG-- -GAACTCCTCACCCCAGCACTGCAACTC--CCTCACCTG >Erinaceus_europaeus GGAAATTCAAAGTTCTACTTGAATGTTTCTTTCAATTCCAAAGAAACCCTAC---------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------AAG GAAAAGAGGAGGAAGT---GGGGGTGGAGGG---------------------------G-GAGAACAGAGCTTGTAAG-- ----------------------TATTTTAGACCTGCGTG >Homo_sapiens GGAGATTCCATATTCTAC-T-AATGTCCCTTGCAAACAAAAAGGAAGCCTGC---------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------------AAA GAAGACAGGAAGGAGG---GGGCGTGGGGGAGGCAGGCAGCAGGGGGTGGAGAGGTGGG-GGTGGCAGGGCGGGG----- ----------------------CAATCT--CCTGACGTG Pig149_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATAT--ATTTAA GGTGTACAACGTGATGTTTTGATATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACC TCACATAGTTACCATTTTTTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAAATTT-CAAGTATACAATACA GTATTATTAACTATAGTCACCATGCTGTACA--TTAGATCTCCAGAACTTATTCATCCTGCATAACTGAAACTTTGTACC CTTTGAC----CAACATCTCCCCATTTCCCCCAC-------------CCCCCAGCCCCTGGCAACCACCATTCTACTCTC TGCTTCTATGAGTTTG--------------ACTTTTTTAGATTCCACATATAAGTGAGATCAT-GCAGTATTTGTCTTTC TGTGCCTGGCTTATTTCACTTAGCATAA--------------------------------------------TGTCCTCC AGGTTCATCCATGTTGTCACAAATGGCAGGATTTCCTTCTTTTTTAAGGCTGAATAATATTCCA---------------- --------------------------TTG-------TGTATAT--------------ATACCACATTTTCTTTATCCATT CATCCGTCGATGGACACTTAGGTTGNTTCCATATCTTGGCTATTGTGAATAATGCTGCAATGAACATGGGAGTGCAGATA TCTCTTCGAGATACTGATTTCATTTCC-TTTGGATATATACCCAGAAGTGGGATTGCTGGATCATATGGTAGTTCTATTT T------------------------------------------------------------------------------- ---------------------- >Canis_familiaris AGCCACTCTTGAGCAATTCATATCTT---TAGGGTTCAGCTTCTT--CATTCGTT-AAAGGAATGTACCGTTAATTC--- ---CTATGCTATAGA---GTTA------------TTTTATTGAACTACAGTTGACAAATA--------ACATTATTTTCA GGTATAGAGCCTAAT---TTGATATTTGTATATATTATGAAATGGTCAGCACAA-TAAGTTTACTTA-ACATCCATCACC TCACAGAGTTACAAGTTTTT--CTTGTGATGA-CATTTTTGAGAT----TTTCTTAGTAGCTTTCCAAATGTATAATACA GTAT---TAACTATAGTCACCATGCTATACA--TTACATCTCCATGATTTATTC-------TTAACTGGAAGCTTGTACT TCTTAACTTTTTTTTTTTTGCCTATTTTGCCCAC-------------CCTTCTAC----------CACCAATTTGTTCTC T----TTGCGAGTTCATTGT----------GTTGTT-TAGATTCCACATGTAAGTGAGGCTATCACAGTATCTATCATTC TCTG----ACTTTTTTCACTTAACAGAAAAGTTTTAAGAAAACTTTTAACAGAAAAAAGACAAGTTTTCACTAATCTTTA AGGTCCATCCATATTGCTGCAAATGCTAATATTTCCTTTGTTTTTATGTCTGAGTAATATTCCA---------------- --------------------------TTAATATATCCATATATTAC-----------ATGTATTCTT-TCTTTATCCATT CATCCATCAATCAACACTTAAGTTGTTTCTATGTCTTGGCTAATGTAAATAATGCTGCAGTGAATAT-GGAGTAC--ATA GATATTTGAGTTGGTATTTTTGTTTCCTTTTGGATAAATACTCAGAAGTGGAATTGCT-GAG-ATGT------------- ----CTACCCTATGG----A---ATTTATTCATTTTACA-------GATTTTT----AGCATTTTCTATATTCTGG---- -------------GCTGTGCTC >Felis_catus AGTTACTCTTGAGCAATTCATATATT---TAGGGTTCAGTTTCTT--CACTTGTT-GA--GGAAGTTTTATTGTTAATTC ---CTACCCTATCAA---GTTC------------CTTTATTGAACTATAATTGAAAAATA--------ACTTTAGTTTCA GGTATACAACATAAT---TTGATATTTGTACGTATTATGAAATGGCTACCACAG-CAAGCCCAGTTA-GCATCCATCACC ACGTGTAGTTACAAATTTT---CTTGTGATGA-CACTTTTGAAATAAACTTTCTTAGCAGATTTCCAAATGTACAATTTG GTAT---TAACTATAGTCACAATGCTGTACA--TTACATCCCCATGATTTTCTT-------TTACCTGGAAGCTTATACC TTTTAAC----TATCTTT-GCCTATTTTGCCCAC-------------CCTTCTGC----------CACCAATCTGTTCTT T------GTGAGTTCATTGT----------GTTGTT-TAGATTCCACATAGAATTGAGGCCATTATAGT-TTCATCACTC TCTGATCAACTTTTGTCACTTAACATAA--------------------------------------------TTTCTTCA AGGCCCATCCTGGTTGTTTCACAGGATAAGACTTCCATTGTTTTTATGGCTGAATAATATTCCA---------------- --------------------------TTAATGCGTGTGTGTATTTTAATTATGTATCACATATTTTT-TCCTTATCCATT TATCCCTCCATCAACACTTAAGTTGCTTC-ATGTCTTGGCTATCGTAAATAATGCTGCAATGAATGTGGGGGTAC--ATA CGTATTTGAGTTGGTGTTTTTGTTTCC-TTTGGATAAATACCCAGAAGCGAAATTGCT-GAT-ATAG------------- ----CTACCCTATAG--TTT---ATTTATTCATTTTGTG--------GGTTTTCCCCAGCA-CTTCTGTATTCTAGCACT TTCTATATTCTGTGTTGAGCTC >Manis_javanica AGCCACTC--AAGCAATTCACATCTTCTCCAGGCTTTAACTTCCTAATATATATT-AAAAGAGTATATTATTAATAATCC ---CTACCCTATGGAGTTGTTT--------------TAATTGAAATTTA------ACATT--------ATGTTCATTTCA GGTGTACAACGTAATGATTCAATATTTGTATATATTGTG-AGTGATCTCCA----CAAGTCTGCTTA-ACAAACATCACC ACATATAGTTAAAGATTTT---CTTGTGATAAGAACTTTTAAGATCTACTTTCTTAGCAGTATT-CACATATAAAATACA GTATTACTGATTATAGTCATCATGCTGTACA--TTACATCCCCATGACTTAATT-TATTTTATAACTGAAAGTTTGTACT GTTTGAT----TACCTTC-ACCCATT---------------------CTCTCTATA---------CATCAATGTATTCTC T------CTGAGTTCTTTTA----------TTTTTTTAAGATCACACATGTAAGTAAGATCAT-GCATTACTCATCTTTC TCTGATGGAC--ATTTTATGTAGCCTAA--------------------------------------------TGCCTTCA AGATCCATCTGTATGGTTGCAAATGGCAAGATTTCC-------TTATGGCTGAATAATATTCCAAATTATATACATACTA TATATGTATATAGTTATACATTATATGTATTATGTTTGTATAATTTATGCAT-----ATATATAATTATTTTTATCCATC CATCCATCAATGACCA--CAGATAGGTTCCATGTCTTATTTACTGTAAATAATGCTTCAGTGAACATGGGGGTGC--ATA TATCCTTGGGTTAGTGTTTTCATTTCC-CTGAGATAAATATCCAGAAGTGAAATTTTT-GAT-ATGT------------- ----CTGCCTTGCAGAGTTT---ACTCATTTATTCTACACA-----AATTTTCTTTC--CAACTTCTATATTCCAGT--- -------AACTCGGCTGAGTTC >Sus_scrofa AGCTACTCTTGAGCAATTCCCATCTTTTCTAGGCTTCAGTTTCCT--CATTTGTT-AG--GAGTATACTAGTAATTA--- ---CTACCCTATAAA---GATT--------------TTGTTAATGTATAATTGACATATA--------ACAATAGTTCTA GG-GCACAAGATGAT--------AAGTATATATATTGGGAAATAATCA-------CATGTCTTGGTACATATCCATCAT- TTATGTAGTTACAAATTTTT--CTT---ATGAGGACTTTTAAGATGTACTTTTTTAGC----TTTCAGACATATAATACA CTATTTTTAACTGTAGCCACTGTGCTGTATACTTTT-------------------------ATAAATGGCAATTTGTATA CTTCAAC----CACCTTC-ACCCAATTCAAACACCTAC---------CCTATTGCCTCTAATAGCCACCAATCTGTTCTG T----CAATGAACTTAGTTT---TTTGTTTGTTTTTAAAAATTAGATATTTAAGTGAAATTAT-ACAGT------TTTTC TCTGAATGACTTATTTCACTTAGCATAA--------------------------------------------TGAC-TCA AGAGCCATTCATGTTGTTGCAAGTGGCAAGATTTCCTTC---TTCATGGCTGAATAATTTTCCA---------------- --------------------------CTA-------CATGTA---------------ATATACTATT-TTGTTTTCCACT AATTCATTAATGGACA--CAAGTCAATTCCCTGTCTTAGCTTTTGTAAATAATGCTGCACTGAACATGGGGGTACATATA TCCTTTTCAGTGAGTGTTT--ATTTCC-TTTAGATAAATACCCAGAAGTGGACCTGCT-GATTATATGT----------- ----CTGCCCTATAGCATTA---ATTC--------TATAGA-----AAATTT-----AATGCCTTCTATATTTCAGT--- -------CACTGTGTT-AGTTT >Tursiops_truncatus AGCCACTCTTGAGCAATTCACATCTTCTCTAGGCTTCAACTTCCT--CATTTGTT-AA--AAGTACACTAATAATTA--- ---TTACCCTGTAAA---GTTT-------------TTTGTTGATGTGTAATTGACATATAAAATTAGTATATTAGTTTCA -GTGTACAACATAATG-----ATATTTGTATATATTGTGAAATAGCCA-------CAAGTCTAGTTACACATCCATCAC- -CATGCAGTTACAAATTTTT--CTAATGATGAGAACTTTTAAGATCTACTTTCTTAACAG-----CAGATATACAATGTA GTATTATTAACTATAGTCACTACGCTGTACATTTTCCATCCTCATGAC-------------ATAACTGGAACTTTGTACA TTTTGAC----CACCTTC-ACCCATTTCAACCCCCACACCCCTGCCACCTCCTGCATCTGGTAACCATCAACCTGTTCTC TGTATCTATGAACTCAGTTTTTGTTTGTTTGTTTTT-CAAATTCCCCCTGTAAATAAGATCAT-ACAGTGTGTATCCTTC TCTGTATGACTTATTTCACTTAGCATAA--------------------------------------------TGCC-TCA AGGTCCATTCACATTGTTGCAAATGGCAAGTTTTACTTC---TTTATGGCTGAATAATATTCCA---------------- --------------------------CTA-------TCTGCA---------------ATGTATCACT-TTTTTATCCATC CATCTATTGATGGATATTTAAGTTGCTTCTATGTATCGGCTATTGTAAATAACGCTGCAGTGAACATGGGGGTGCATATA TATTTTTGAGTCAGTGGTT--ATTTCC-TTTGGATAAATAACCAGAAGTGGAATAGCT-GATTATATGT----------- ----CTGCCACACAGCATTT---ATTCATTTATTCTATAAA-----TAATTTT----AACACCTCCTATATTTCAGT--- -------TTCTGTGCTGAGTTC >Equus_caballus AGCCACTCTGGAGCAATTCACATCTTCTCTAGGATTTGACTTCCT--CATTTGTT-AAAAATGCATAC-ATTAATAATTC ---CTACCCTATAGA---GTTT---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------ATTCATTCATTCTACACA-----GGTTTTTTTTAAGCATCTTTCACATTCCAG---- ---------------TGAGTTC >Ceratotherium_simum AGCCACTC------AGTTCACATCTCCTCTAGGGTTCGACTTCCT--CATTTGTCAAAAAAAGCATGCTATTAATAATTC ---CTACCCTATAGA---GTTT---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------ATTCATTCATTCTACACA-----GGTTTTTTTT-AGCACCTTCCATATTCCAG---- ---------------TGAGTTC >Myotis_myotis AGTCACTCTTTAGCAATT-ATATCTTCTCTAGGC-TCAACTTCCT--CATTTGTT-AA--GTATATACTATTAATAATTC ---ACATCCTATAA-------C---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------ATTCATTTATTCTAGACA-----GATTTTT----TATATCTTCTATATTCCAGT--- -------GACTATGCTGAGTCC >Rhinolophus_ferrumequinum AGCCACTCTTTAGCAATTCACATCTTCTTGAGGCTTCAACTTC-----ATTTGTT-AA--GAGTATACTATTAATAATCC ---CTACCCTATAAA---GTTT---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------ACTCATGCATTCTACACA-----TATTTTTTAA-AGCATCTTCTATATTCCAGT--- -------GACTGTGCTGAGTCC >Condylura_cristata AGCCACTCT--------------------TAGGCTTCAATAACTT--CCTTTGTT------AGTCTACTTGTAATAATCC ---CTACTCTATGGA---GTTT---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------ATTCATTACTTATATACA-----AGTTTTTC---AGCACCCTTTCTATTCCAGA--- -------CACGGTGTAGATATC >Erinaceus_europaeus AGCCACTCTCAGGCACTATATATCTTCTTTGGGCTTCAACTTCTT--CACTGCTT-----AAAAAATCTATTATTAATTT ---CTACCCTATGGA---GTTT---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------ATTAATTC-TTATACCAG-----TTTTTGTTTTTAGCACTTTACATATTACAGT--- -------GACTGAGTAGAATTC >Homo_sapiens AGCCACTGTGGGGCAATTCACATCTTCTTTGTGCTTCAATTTCCT--CATCTGTT-AACCGAGTATCCTATTAATACTTC ---CTTCCCCTTAGA---GTTT---------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------ATTCATTCATTCTACAGTTTTGTTATTTTCTTTCAGCACCTTCTTTATTCTAGT--- -------TGCTATACTGAGTTC Pig186_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------TAAGAGAGTAGAT----CTTAAGTGTTCTCACCACACACAAAAAAAT------GGTAACTATGTGAGGTGA TGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAA TATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA-------------------------------- ------------------------------------------ >Sus_scrofa TTTGCTTCTCTTAGCTGGGAATCCAACATTTTTGGATTTTGTTTTGGATTTTTTGTTTTTTAC----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------CAACTTTGGATCA---ACATT-CAT TGTGGG-------------GAT----CTCAAACATTCTCATCACAAGAAAA-----------TATAACTATTTGTGGTGA CTG--ATGTTAACTGGACTTATTCTGGTGATCACTTTACAATATATACAAATATCAAGTCATTATGTTGAACACATGCAA CTAATATAATGT---AATGTCAGTTATACCTCCATA---------AAA---AGATCCATTGCAAG---TACCTTTCTTGG TGTGC--------TAAATTATTCCACTTTGACTTTTCCTGTA >Bos_taurus TTTGCTTCTTTTAGCTGGGACTCTGACTTTTTAA---------TTTCTTTTTTTTTTTTTTAC----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------CAACTTGGCATCA---AAATC-CAT TGCAAG-------------GCTGTTGATTGAACTTTCTCATCACAAGAAAAAAAAAACACATTGCAATTAAGTGTGGGGA CAG--ATGTTAACTGGACTTACTATGGTGATCACTTTGCAATATATACAAATATTGAATCATTATGTTGTACATTTGAAA CTA-----ATGT---TATGTCAGTTATACCTCAATAA--------AAA---AAATCCATTGTGGG---TACCTTTCTTCA TGT----ACTGATTAAAACATTCCACTTTGACAGTTCCTGTA >Equus_caballus TCTGCTGCTCTTAGCTAGGAATCCA---------------AAGATTTTCTTTTTGTTCTTTAC----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------CAACTTTGCATCA---AAATA-CAT TGCAGG-------------GAT----CTTGAAAGTTCTCATCCCAAGAAAACAAATTC----TGTAACTGTGTATGGTGA CGG--ATGT--GCTAGACTCATTGTGGTGATCATTTTATAATATATCCAAATATCAAGTCATTATGTTGCACACCTGAAA CTACTAGGATGT---TATGTCAGTTGTACCTCAAGAATAATAATAAAA---AAATCCACTGCAGG---TACCTTTCTTCA TGTACCATCGAATTAAATTATCCCTCTTTGACTTTTTCTGTA >Ceratotherium_simum TCTGCTGCTCTTAGCTAGGAATCCA----------AACAGTTTTGTTTGTTTGTTTGTTTTAG----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------CAACTTTGCATCT---AAATC-CAT TGCAGA-------------GAT----CTTGAAAGTTCTCATCACAAGAAAAAAATTC-----TATAGCTATGTATGGTGA CGG--ATGTTAACTAGACTTATTATGGTAATCATTTTGCAATGTATACAAATATCAAGTCATTAGGTTGTACACCTAAAA CTAAT---ATGT---TATGTCAGTTGTACCTCAATAATAATAAT-AAA---AAATCTGTTTCAGG---TACCTTTCTTCA TGTGCCACCTAATTAAAATATCCCTCTTTGACTGTTTCTATA >Canis_familiaris TCTGCTTCTCTTAACTGGGAATCCA--------------------------TTTTTTTAAGAC----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------CAACTTTGCATCA---AAATC-CAT CGCAGG-------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------TATCTTTCATCA TGTGCCATCTAATTAAAATAACCCTTTTT-----TTTCCATA >Mustela_putorius_furo TCTGTTTCACTTAGCTGGGAATCCAAC------------------------TTTTTTTTTTTT----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------CAACTTTGCATCA---AAATC-CAT TGCAAG-------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------TAACTTTCATCA TGTGCCATCTAATTAAAATATCCCCCTCT-----GTTCCATA >Manis_pentadactyla TATATGTCTCTTAGCTAGGAATCAA----------------------------AATATATAAC----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------CAACTTTGCATCA---AAATC-CAT TGCAGG-------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------TACTTTACTTCC TGGGCTATCTAATTAAA-TATCCCTCTCTGACTGCTCCTATA >Myotis_myotis TCTATTTTCCTTAGCTGAGAATCCT---------------TTTTTTTCTTTTTCTTTTTATAC----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------AAACTTTGCAGTG---AAATC-CGT TTCAGG-------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------TACCTTTCTTCA TATGCCATCTAATTAAATTATCTGCTCTT-ACTGCTCCTATA >Rousettus_aegyptiacus TCTACTTTTCTTAGCTGGGAATTCA-------------------ATTCTTTTTTTTTTTTTAC----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------CAGCTTTGCATCA---AAATT-CAT TGCAGG-------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------AAACTTTCTTCA CATGCCATCTAATTAGAACACCCTCTCTG-----TTCCTATA >Condylura_cristata TTT------CTTACTTGGGAGTTCA-------------------TCAAAGATTATGATTTAAGAAAG------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------CAACT--GCATCA---AAATC-CAT TACAGG-------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------TGTCTTTCTTCA TGTGTGTTCTTATTACAATATTCTTCTTTCACTCTTCGTATA >Sorex_araneus TTTTTTTTTGTCAGTTGAGAATCCA-------ACTGAAGTGTTTTTATCTAGATATGTATTAAAATGCACTGTGGTCCAT GATGACCTCTCAGTATATGTGTTGCAAGCCATAATGCCCCAAAGTAGAGAGTATGGGGAATATTGTCAGCCATTAAGTCA GGGGGAGGTTGGGATAGGGGGGTATACTGGGGATATTGGTGGTGGGGAATGTGCACTGGTGGAGAAATAGCTGTTTGATC ATTATGTGATTGTAACGCAAACATGAAAGCCTGTAACTATTTCACGGTGATTCAATAATTTTTTTTAA---AAAATGCAC TGTGGA-------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------TATCTTTGTTCT TGTGCTACCCAATTGAAACGTTCTCTTTTCA-TATTCCTATA >Homo_sapiens CCTGCTTCTCTTAGTTGGGAGTCCA--------------------------TATAGTTTTTAC----------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------CAACTTTTCATCA---AAAGC-CAT TGCGGG-------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------TAGCTTTCTTCA TGTATCATCTAATTAAAATATCACTCTGAGACTGTTCCTACA Pig240_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------------GGGGTGGGGGAA ATGGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGATCT---AATGTACAGCA TGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATCTTAAGTGTTCTCACCACACAC AAAAAAATGGTAACTATGTGAGGTGATGGATATGTTAATTAG------CTTGATTGTGGTAATCATTTCACAATGTATAC GTATATCAAAACATCACGTTGTACACCTTAAATAT-----------------------------------ATACAAT--- ------------------------------------------------------TTTTATTTGT--CAATTATACCTCAA T------------------------------------------------------------------------------- ---------------AAAGCTGGAAAAA---------------------------------------------------- ---------------------------------------- >Sus_scrofa ATAGCCAGC-TTTCTCTGCTTAGACATTTTCATTCAAATGT--------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TCAGTCTC---AGAAATAGCT-------------GG TTAGGACTGATGTTGTTTAATGGTACAAACATGAACCCA---GTGACAAGTGCATCCTAGAGAGCT---CATGGACACTC TAGTGAACATAGGCAACAATATTGTATTATAATCATCAAACTTGCTAAAAGACTAGATCTTTG-TATTTCCAACCACTTA AAG--------AATTAGGTGACTTGACAAAGGTGGTAATTATCAGTCATAATATGCCGTAAATCATAGTATA--CTATAA ATATATCAAAATAACACATCATA-ACCTT-AATATAGGAGTTCCTGTTGTGGCTCAGCAGGTTAGTGTTCATGAGGATGC GAGTTCGATCCCTGCCTCATTCAGTGGGTTAAGCATCCAGTGTTGCCACAGCTGTGGTGTAAGTCACAGATACAGCTCAG ATCTGGTGTGGCTGTGGCTGTGGTGTAGCCTGGTAGCCAAAGCTCCAATTTGCCCCCCAGCCTGGGAACTTCCATATCCT CAGGAGCATCTCTAAAAA---GGAAATAAATAAATAACT---AGAAA--------AATAATATAACTCTCTA-------- ---AGAAAAGTTGAGAAATGGC-TACCCTC--TGGTTTAA >Vicugna_pacos GCAGCCAGC-TTTCCCTGTTGAGGCATTTTTGTTCAAATGT--------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TTATTCTT---GAAAATAGCT-------------GG ATAGGACAGAGGTAGTTTGAGGGTAAGAACATGCAACAA---GTGACAAATACATCCTAGAGCTCT---AATGCACACTG TAGTGAATGTAGGCAACAGTGTCGTCATATAATCATCCAACTTACTTAGAGACTAGATCTTAA-TATTTCCAGTCGCTGG AAAGAAATGATAATTATGTGATGTGTTAAAGATGCTTATTAT------TACTACAACGGCAATCATATTCTAACATATAA ATGTATCAGATTAATATGCTGTACATC-------------------------------------------ATACAGACGC AA----------------------------------------------------CATTCTAAGT--CAAATATAATTCAG T------------------------------------------------------------------------------- ---------------TAA---AGAAACA--------------AGAAGTAGCT---GATGATCCAACTCATTA-------- ---AGGAAAAACCAAAAATGGC-TGCCTTCTTTGGTTTCA >Condylura_cristata GTAGTTTGC-TTTCACTATTGAAATAGTTTTATTTAGGTAG--------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----GACAGATGTTGTTTAAAGGTACAAACTTGCACTGA---GTGCAAAGAAAGCCTTAGAGATTT---AATACTCTAAA TTATGATTAGAGACCAGAGTATTCTACTACA--TATCAAGCTTACTAAGAGACTAAATGTTAA-TGTT---------AGA AAAAAAATGATAGTTATATGACTTGATAGAGCT-CTAATTAT------CACAATAGTGGTGATCATATTACAATATATAA AGGTATCAAACTAATTTGTTGTATACCTT-AATAT-----------------------------------ATACAG---- ------------------------------------------------------TACTGTATGT--CTGGTGTATTTCAG T------------------------------------------------------------------------------- --------------AAAA---AGA------------------AGAAATAGTT---AATGATTCAACTCATCA-------- ---AGGAAAACTTAGAAATAGC-TGGTTT-------TTAG >Erinaceus_europaeus GT-GTCATC-TTTCACTGTTGAGATATTGTTGCTCAGTTGTGTGTGTGTGTGTGTGTCTGTGTGTGTGTAGTTCAGGCTT CATACATGCATGATTTCACTGATCCCAGGCCTCTATTTCAATTTATATAGAGATGCAGAGAGTGAAACGGAGAATAAAGC AGAGATATCACAGAACCTCATCTTCCTCCTGGAACTCCCCATGTGGTACCTGGATTTAAAGCTGGACAGGGTATATAGAA AGGCATATGTCATATGCAGTGAACTATCTTACTAGTTACAAATGTCAGTTTC---ATAAATATCT-------------GG ATGAGAAAACTGTAATGTAGGAGTAC-ATCTAGCAATGA---ATTGTAAATTAAGTCTTGAGATCTGAAAATGCAA---- -AATGAGTATAGATAATGATAGTGTATTATAATTCTCAGATTTACTAAGAG-----ATCTTAA-TATTTCCAGAATCTAA AAA------ATAATTATGTGCCATGAAAGAGGCACTA-----------TACTATAA----AAT--TATTACAGTATATAC ATTTA----ATTAACATTCTGTACGCCAT-AATAT-----------------------------------ATAC------ ------------------------------------------------------TGTTTTATAT--CAAATAAGTTTCGA T------------------------------------------------------------------------------- ---------------AAC---AGAT-----------------TGAA--AGT----GATAATGTAATTC------------ ----------ATGAGTAATGGCATGTTCTCTTTGTCTTAA >Canis_familiaris GGACTCGGCTTTTTCCTGTTGAGACAACTCTGTTTAAGTGT--------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TTATTCTT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------AGAAATGGCT---GATGAT-CAACTCATCAAAAAATAT GGGAAAAAATATGAGAAATAGC-TATCCCATTTGCTTTGA >Felis_catus GGAGTCAGT-TTTCTCTCTTGAGACACCTTT-TTCAAATAT--------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TTAGTCTT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------AGAAATGGCT---GATGATCAGACTCATCA-------- ---AGAAAATATAGGAAATGGC-TATCCTGTTTGTTTTTA >Manis_javanica GTAGTCAGC-TTTCTCTGTTGAG-CATTATAGT-CAAATGT--------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TCAGCCTT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------AGAAATAGCT---GATGATACAGCTCA----------- ---AGAAAAAATGAGAAATGGT-TGTTCTCTTTGTTTCAA >Equus_caballus GCAGTCAGC-TTTTGCTGTTGAGATATCTTTGTTCAAATGT--------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TCCTCCTT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------AGAAATAGCA---GATGATCCAACTCATCA-------- ---AGAAAAAATGAGAAATAGC-TGTTCTCTTTGGTCTAA >Tapirus_indicus ATAGTCAGC-TTTTGCTGTTGAGATATCTTTGTTCAAATGT--------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TCATTCTT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------AGAAACAGCT---GATGACCCAACTCATCA-------- ---ACAAAAAATGACAAATGGC-TGTCCTCTGTGGTTTAA >Myotis_myotis GCAGTCAGC-TTCCCCTCTTGAGACATCTCTGTTCAAA-AT--------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TCAGTCTT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------AGAAACAGCT---GATGATGCGACTCCTCA-------- -GGAAAGCAAATGAGAAATGGC-TG-CCTCTTTGGACTAA >Rousettus_aegyptiacus GCATTCAGC-TTTCTCTATTGAGAAATCTTTGTTCAAATGT--------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TTAGTCTT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------AGAAATAGCT---AATAATCCAACTGATCC-------- -AGAAAAAAAATGAGGAATAGA-TGCCCTTTTTGGTTTAA >Cavia_porcellus ACAACCAA-------CTGT---GACATCATTGTTCAGGTAT--------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------TCAGTTTT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------ACACACAGCT----ATGAGCCAACTA------------ ---TAAAAAACTGAGAAGTGGC-TCCTGTCTTTGGTTTGT Pig254_LINE >L1MA9_3END -------------------------------------------------------------------------------- --------------------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTAC AACGTGATGTTTTGA----TATACGTATACATTGTGAAATGATTACCACAATCAAGCTAATTAACATATCCATCACCTCA CATAGTTACCA------TTTTTTTGTGTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAAATTTCAAGTATACAATA CAGTATTATT-AACTATAGTC-ACCATGCTGTACATTAGATCTCCAGAACTTATTCATCCTGCATAACTGAAACTTTGTA CCCTTTGACCAACATCTCCCCATTTCCCCCACCCCCCA------------------------------------------ ------------------------------------------- >Sus_scrofa TTTATTAAAT----ATCTGCTGATTTGTT-AAATATTTATATACCTTCCTGA--AC--TAA---CATCCTTTTGTTCTCC -------------------------TTTTTTTTATTGAGGTGTAATTGACATAT-AACATTA-ATGAGTTTCAGGTGTAC AGCATAATCATACAA----TATTTGTATATAGTGCAAAATGATCACCGCAATAA-------------GTTTTTCACTATA C--AGTTAGAATTA---TTTTTTTCCTTGTGATGTGAACGTCTAGGATCTGTTCTTTTAGTAACTTGCAGATAAGCAGCC CCGGATC---------------ACCATGCTGTACATTACATCCCAGTGACACAGTTATTTT--ATATCTGGAAATCTGTA CCTTTTGACCCCCCTCACCTTGTTCTT--------------TGTGGTTTTT-----------------TT---TAAGCCA CTGGATGTGGACAAAGATTCATCTCTAGTGACCCTTTGTTATG >Bos_taurus TTTTTTAAATAGAT-TTTTCTGATTCGGT-AAATACTTATATACCATTCTGATAAG--TAA---TATTCTTTTGTTCTTT ------------------------------TTTATTGAGATATAATTGACATAC-AACATTA-ATTAGTTTCAGGTATAC AGCATAATGATTTGA----TATTTGTATATATTGCAAAATGATCACCACAATAGCTCTAGTTAAC--ATCCTTCATCATA C--AGTTACAGAATT--ATTTTTTCCTTGTGATGAGAAGTTACAAGGTCTACTCTCTTAGTAACTGTCAAATATGCAGTA TAGTATTACTAAACTGGAGTCAACCATGCTATACATTACATCCCCATGACTTACTCATTTT--ATAAGTGGAAATTTGTG CC-TTCAACCCCCTTCACCCTGTTCCT--------------TGTTTTCTTTCTTTTTTTTTTTTTTATTT---AAAGCCA CTGGATGTGGACAAAGATTCATCTCTGGTGACTCTTTGTTATG >Equus_caballus TTTATTAAATAGATATCTTCTGATTTGTT-AAATACTTACATACTTTTCTGATAAC--TAG---CATTTTTT-GTTTTTT ----------------GCTTTTTTTATTTTTTTATTGAAGTATAATTGGCATAT-AACATTATATTAGTTTCAGATGTAC AACCTAATGATGCGA----TATTTGTGTTTGCTGTGAAATGATCACCACAATAAAGCTAGGTAAC--ATCTATCACCATA CGTAGTTAAAAAAATACATTTTATCCTTGAGATGAGAACTTTTAAGATCTACTC-CTTAGCAATGTTCAAATATGCAATA CAGTATTACT-AACTATAGTC-ACCATGCTGTACGTTATATCCCCATGACTGACTTATTTT--ATAACTGGAAGTTTGTA CCTTTTGACC--------TCTGTTCTT--------------CGTTTT---------------------TT---AAAGCCG GTGGATGTAGACAAGGATTCCTCCCTGGTGACTCTTTGTTATG >Ceratotherium_simum TTTATTAAAT-GATATCTTCTGATTCGTT-AAATACTTATATACCTTTCTGATAAC--TAA---CATTCTTT-GTTTTTT ----TGTTGTTTGTTTTTCTTTTTTCTTTTTTTATTGAGGTATAATTGGCATAT-AACATT--ACTAGTTTCAGGTGTAC AACATAATGATTCGA----TATTTGTGTATGTTGTGAAATGATCACCAAAATAAGGCTAGGTAAC--AGCTATCAGCATA CATAGTTAAAAAAAT--TGTTTTTCCTTGAGATGAGAACTTTTAAGATCTACTCT-TTAGCAACTTTCAAATATGCGATA CAATATTACT-AACTATAGTC-ACCATGCTGTACATTACATCCCCATGACTGACTTAGTTT--ATAACTGGAAATTTGTA CCTTTTGACC-------CCCTATTCTT--------------TGTTTTTT-------------------TT---AAAGCCA GTGGATGTAGACAAAGATTCATCCCTGGTGACTCTTTGTTATG >Myotis_myotis TTCATTAAATAGATATATTCTGATTTGAT-AAATACATATATACCCTTTTGATTAT--TAA---CATTCTTT-GTTTTTC ----------------------------TTTCTTTTGAGGTATAATTGACA------------------TTCAGGAGTAC ATCATAATGATTTTG----TATTTGTATATATTGCAAAATGGTCACCATCATAAATCTAGTTAAC--TTCAATGACCACA C--AGTTATAAA-----TTTTTTTCCTTGTGATGAGAACTTTTAACATC---TCTCTTAACAATTTCCAAATGTGCAATA TGGTATTGCT-ACGTACAGTC-AC-------TACATTAAATCCCCATGACTTACTTATTTT--GCAACTAGAAATTTGTA CCTTTAGGCCTCCTTCACTCTGTCTTT--------------TGTTTCTTTTTTGTTGTTGTTTGTTTTTT---TAAGCCA CTGGATGTGGACAAAGATTCCTCCCTGGTGACTCTTTGTTATG >Rousettus_aegyptiacus TTTATTAAAT----ATATTCTGATTTGTT-AAATACTTATATACTTTTCTGATTAT--TAA---TGTTTTTT-ATTTGTT --------------------------TTTGTTTTTTGAGGTATAATTGACATAT-AACAT---ATTGTTTTCAGGTATAC AACATAGTGATTCAATCAGTATTCATATATATTGTAAAATGGTTATCACAATAAAGCTAGTTAAC---TTTGTAACCACA C--AGTTACATCT----TTCTTTTTCTTGTGATGAGAACTTCTAAGCTCTACTCTC--AACAACTTTCAAATATGCAATA CAGTGTTATT-AACTATAGTC-ACCGTACTGTACATTACATCCCCAGGAC----TTATTTT--ATAGCGGGAAATTTGAA CTTTTTGACCCCATTCTTTTTTTTTTT--------------TATTTTT--------------------AT---AAAGCCA CTGGATGTAGACAAAGATTCCTCCCTTGTGACTCTTTGTTATG >Canis_familiaris TTTATTAGCT----GTCTTCTGATTTGTT-AAATACCTTT-TGCCTTTCTGATAACTATAA---TATTCTTT-GTTTTTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------AAAGCCA CTGGATGTAGACAAAGATTCATCCCTGGTGACTCTTTGTTATG >Felis_catus TTTGTTAAAT----ATCTTCTGATTTGTTAAAATACCTTTATACCTTTCTGATAAC--TAA---TGTTCTTT-GTTTCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------AAAGCCA CTGGATGTAGACAAAGATTCATCCCTGGTGACTCTTTGTTATG >Manis_pentadactyla TTTATTAAATAGGTATTTTATGATTTGTC-GAGTACTTATATACCTTTCTGATAAC--TAA---AATTTCTT-GTTTTTT T------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------AAAGCCA CTGGATGTGGACAAAGATTCATCCCTGGTGACTCTTTGTTATG >Condylura_cristata TTTATTGAATAAGTATCTTCTGATTAGTT-AAATGCTTAAGTACCTTTCTAATAAC--------TGATTGTT------TT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------AAAGCCA TTGGATGTGGACAAAGATTCATCCCTGGTGACTCTTTGCTATG >Sorex_araneus TTTA-TAACTAGGCACC-----ATTC----AAATAC----AAACCTTTCTAACAAC--TGT---TGTTGTTT-GCTTTGT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------AAAGCCA CTTGATGTGGACAAAGATTCATCCCTCGTGACTCTGTGTTATG >Homo_sapiens TATATTATTTCGAT---TTATGATTTGTT-AAATACTTACATACCTTTCTGATAAC--TAA---TGTTTTTT-GTTTTTT T------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------AAAGCCT GTGGATGTGGACAAAGATTCATCCCTAGTGACTCTCTGTTATG Pig259_LINE >L1MA9_3END -------------------------------------------------------------------------------- -TTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATT TTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA------------------------------------------- ---------------------------------------- >Sus_scrofa GACAGATGCAACTGTGGAGATTGGGAGTTAGGGAGTCTGAATTACT--ATTC---AGAGTG----TGCTCAGGGAGAC-- -------------------TCCTTTCACAATGTATATGCATATCAAATCATCATGTTATGGCCTTTAAATATTTTATGAT TTAATTTGTCAATTATGCTTCCAT-AACCTGAAA--------AGAATGTGCTA-----AAA---GTACAAGGGTTAAGAG GCACTGGCTTGGTAGTGAAGGAGAAAGA-GGCAAATAAAT >Bos_taurus GATGGATTCAACTATGGGGCTG-GCAGTTAGGGAGTCTGAATTAGT--ATC----AAAGTG----TGTCAGGAGAGAA-- -------------------TCCTTGCACAATGCACACATTTCTCATAACACCTTGTTACACACTTTAAATATTTTACAAT TTTATTTGTCAATTATACCTCAATAAAGCTGAGGGAAA----AAAGTGTGCTA-----GAA---GTGCAATGGGTAAG-- --------------------------------AAAGAGAC >Equus_caballus GATGGGTTCAGCTATGGAGATT-GGAGTCAGGGAGGATGAATTAGT--ATTA---AAAGTG----GACAAGAGAAGAA-- -------------------TCTTTGCAGAATATATACATTTATCAAATCATCACATTATACACTTTAAATATCCTACAAT ----TTTGTCAATTAAACCTTGATGAAGCTGGAAAAA-----GAAGTGTGCTAGAAGAGAA---ATACAATGGATAAGAG GCACTGGCCCACCTGTGGAGGAGAAAGATGAGACAGCAAC >Ceratotherium_simum GATGGATTCAACTATGGAGATT-GGAGTTAGAGAGGATGAATTAGT--ATTA---AAAGTG----TGCCAGGGAAGAA-- -------------------TCCTTTCACAATGTATACCTTTATCAAATCTTCACGTTATACACTTTAAATATCTTACAAT TTTATTTGTCAATTATACCTCGGTAAAGCTGAAAAAAAG---AAAGTGTGCTAGAAGAGAA---CTACAGTGGATAAGTG GCACTGGCTCAATAGTGGGGGAGAAAGATGAAACAGCAAT >Myotis_myotis GGTGGATTCAACTAGGGAGAGC-CCCGTTAGGGAGTCAGGGTTAGT--ATTA---AAAGTG----TGCCAGGAGAGAG-- -------------------TCTTTTCATGATGTATACAATTATCAAATCATCACCAT-TACACTTGAAATATCTTACCAT TTTATTTGTC-ATTATACTTGGATAAATTTGGGGGCAA----GGAGCATGCCAGA-GAGAA---ATACAATGGGTAAGAG GCTCTGGCTCAGTAGTGGAGGAGAAAGATGCGAGAGCAAT >Rousettus_aegyptiacus GGTGGCTTCATCTAGGGAGATG-GGATATAGGGAGTCTGGGTTAGT--ATTA---AACATG----TGCCAAGGA-GAA-- -------------------TCTTTTCATATCATGTACTGTTATTGAATCAT---GTTATACACTTTATATATCTTACAAT TTTATTTGTCAATCATACATCAGTAAATTTGGGGGGA-----AAATAGTGTCAGAAGAGAA---GTACAATGGGTGAGAG GCACTGGCTCCGTAGTGGAGGAGAAATATAAGAGAGCAAT >Canis_familiaris GATGGATTCAACTAGGGAGATT-GGAGTTAGGCAGTCTGAATTAGC--ATTG---AAAGTA----TGCTAGAGGAGAA-- -------------------------------------------------------------------------------- ----------------------------------------------------------------GTACAATGTACACAAG GCATTGGCTCAGTAGTGGAGA--AAAGATGAGAGAGCAGG >Felis_catus GATGGATTCAACTAGGGATATT-GGAGTTAGGCAGTCTGAACT-GC--ATTG---AAAGTG----TGTCAGAAGAGAG-- -------------------------------------------------------------------------------- ----------------------------------------------------------------GTACAATGAGCTGGAA GCACTGGCTCGGGATTGGAGGAGAAAGATGAGAGAGCAGT >Manis_pentadactyla GATGGATTCGTCTAGGGGGATT-GGAGT-AGGGAGTC-------------TA---AAAGTGTGCCTGCCAGAAAAGAA-- -------------------------------------------------------------------------------- ----------------------------------------------------------------GCACTGTGGGTAAGAG GCACTGGAGAAGTAGTGGAGGAAAAAGATAAGGGAGCAAT >Condylura_cristata AATGGATTCAACTGGGAAGGCT-AGACTGAGGGACTTTGGATTACTTGATAT---AAAACA----TAGCAGAAGAGAA-- -------------------------------------------------------------------------------- ----------------------------------------------------------------GTATAGTGGGTGGGAG GCACTGACTTAGTAGAGGAAGAGAAAGATCAGAGAGCACT >Erinaceus_europaeus GATAGATTCAGAGAGGGAGATC-AAAGTTAAGGAGTTTGACT------AT-----GCAGTG----TCCTGGAAGAGGA-- -------------------------------------------------------------------------------- ----------------------------------------------------------------A---GATGGGTAAGAG GCACTGGTTCAAAACAAAAGATTAAGGCTGTCAAAA-GAT >Homo_sapiens GATAGATTTAAATG-GGAGAGT-AGATTTTAGGAGTCCAAATGAGT--ATT----ACAGTG----TGCCAGAAGTGTA-- -------------------------------------------------------------------------------- ----------------------------------------------------------------GTATACTGGGTGAGAG GAACCAACTTAGTAGTGGAGGTGAAAGATGAGAGAGCAAT Pig270_LINE >L1MC1_3END -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------TTTTTAAA-----TAGACTTTATT----------TTTTAGAGCAG TTTTAGGTTCACAGCAAAATTGAGCGGAAGGTACAGAGATTTCCCATATACCCCCTGCCCCC------------------ ------------------------------------------------------------- >Sus_scrofa GATAGGATGTCAAAAAAATATCACTATGGTTAAGTAATTA---------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------TCACAGACCAG---GGGGGTAT-----------CACCC TTTA---AA---AACATTTGCCTTTTGCTTTATTCATATG---ACACCACAGCATGGA-----CTCTTGCTCAGTAGTTC TATATCTAGAACTACTAGATCTAGTCCA----TTTTTTAAAAA----ACAGACTTTGTT----------TTTTAGAGCAG TTTTAGGTTCACAGCAAAACTGAGTAGAAGTTATAGAAATGCCCCAT------------------TGG-GGTAG---TTT T---AT---AGAGTAACACTTAGAATTAGATTATCCATTCAA-TAGCAAAC-AAAATCATT >Bos_taurus AACAGGATGT-GAAAACACATCATTGTGGTTAGGTAATTA---------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------TTACAGACTAC---TGGGGTGT-----------CATAT GTAT---TA---AAATTTTGCAATTTGTTTTATT-ATATGAATAAAGAACAGCAGGAACAGCCCACTCATTTGGTAGGT- --------------CTACATTTAGCTCA----TATTTTAAAAA----TTAGACTTTATT----------TTTAAAAGCAG TTTTAGGTTCACAGCAAAATTGAGTGAAAGTTACAGAAATGTCCCAC------------------TGG-GGTATCATTTT T---AT-----AGAAACACTTATA------TTATCCATTCAA-CAGCAAAC-AAGATTATT >Myotis_myotis GACATGACTTGAAAAAAAAGTCAATATAACTAGG-AATTA---------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------TTACAGAC-AC---TGAGATAT-----------CTTTT TGTT---GT-------TTTGACATTTGCTTTATTCATATG---GTAGCATATTATGAACAGTTCTCCAGATCAACCATG- --------------CTAGAACTAGTTCA----TTTTTCAAAAA-----TAGATTTTATT----------TTTTAGA---G TTTTAGGTTCACAGCAATAGTGAGCAGAAGTTTTAGAAATTTCCCAT------------------TGG-CATATCATTTT TTTTCT---AGAGTAGCACTTAGAACTAGATTATCCGTTCAA-CAACAAAT-AAAATTATT >Rousettus_aegyptiacus GACAGGATGT-GAACAAATGTCA-----GCTAGGTGACTAC--------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------TACAGACCAC---TGAGGTGTGTGTGTGTGTGTGTGT GTGT---GTGTGTGTGTGTGTGGTTCGCTTTATTCACGTG---ATAGTACATCATGAACAGACCTCCAGTCCGACAGCT- --------------CTAGATCCAGTTCACT--TCTTTTAAAGA-------GATTTTCT-----------TTTTAGAGCCG TTTTAGGTTCACGGCAATATGGAGCGGAAGTTACAGAGTTTTCCCAT------------------TGG-GGTATCATTTC T---CT---AGAGTAACACTTAGAATTAGATTATCCATTCAA-CAGTAAACAAAAATTATT >Condylura_cristata TATAGGCTGT-GAAACCATGTCAACAA----------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------TAACAGACGAC---TGGG-TAT-----------CAACA TTTT-------TAAATTTTGCAAGTTGCT---TTCATATG---ACACTATGTCATGTAGAGTCCTC-AGTTCAGTAGCT- --------------CTAGACATAGTACC----TTAAAAAAAAAAGTAAGATTTTTTGTT----------TTGAAGAACAG CTTTAGGTTCACAGCAAAATTGAACAAAAGTTAAAGGAAAATCCCAG------------------GAGCGGTATCATTTT T---GT---AAAGTAACAATTGGA------TAATTCATTCAC-CAGCAAAG-AAAGCTATT >Solenodon_paradoxus GCTAGCATGT-AA-AAAATGTCAGTCTGCTTAGGTAATTA---------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------TTATAGACCAC---CAGGGTAT-----------CATAT TTGT----TATTTAATTCTGCAATTTACTGTATTCCTAGG---ACAGTAAATTGTGAAGCGTCCTCCAGTTGAGTAACT- --------------CTAGATCTAGCTCATTTGTTTTTTAAAGACTTTTTTTATTTTATTTATTTATTCATTGTAAAGCAG TTTTAGGTTCACAGCCAAACTGAGCAGAAGTTATAGGAATTTCCCA-------------------TAAGGGTATCATTTT T---AT---AGAGTAACACTTAGA------TAATCTATTCAA-CAGCAAAC-ATAATTATT >Canis_familiaris GATAGGATGG-GGGGAAATGTCAGCACGGTTAGGTGATTA---------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------TCACAGCCTGC---TGGGATAT-----------CATTT TCCT---------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------AGAGTAACATCTAGAACTAGGTTATCCATTCAA-CAGCAAAC-AAAATTGGT >Felis_catus GACAGGATGG-GGGGAAAAGTCAGTATGGTTGGGTGATTA---------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------TTACAGACTAC---TGGGGTAT-----------CATTT TTCT---------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------AGAGTAACATCTGGAATTAGGTTATCCATTCAA-CAGCAAAC-AAAATTGTT >Manis_pentadactyla GACAGGATGG-GGGAAAATGTCAATATGGTTAGGTAATTA---------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------TTACAGACCAC---TGGGGTAT-----------CATTT TTCT---------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------AGAGTAACATTTAGAATTAGGTTATTCATTCAA-CAACAAAC-AAAATTATT >Equus_caballus GATAGGATGG-GAGAAGACGACAGTATGGTTAGGTAATTA---------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------TCACAGACCAC---TGCGGTAT-----------CATTT TTAT---------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------AGACTAACATCTAGAATTAGGTTATCCATTCAACCAGCAAA------TTATT >Ceratotherium_simum GATAGGATGG-GGGAAGATGTCAATATGGCCAGGTAATTA---------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------TTACAGACCAC---TGCGGTAT-----------CATTT TTAT---------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------AGAGTAACATCTAGAATTAGGTTATCCATTCAA-CAGCAAAG-AAAATTATT >Homo_sapiens GATCAGAGAG-AACAAAATGTCAGTATGATTCGGTAATTCTTTTTTTTTTTTTTTTTTTTTTTTTTGAGACAGAGTCTCA TTCTTGTTGCCCAGGCTGGAGTGCAATGGCACAGTCTCGGCTCACTGCAACCTCCACTTCCCGGGTTCAAGCGATTCTCC TGCCTCAGCCTCCCAAGTAGCTGAGATTACAGGCTTGCGCCATCACGCGTGGCTACTTTTGTATTTTTAGTGGAGACAGG GTTTCTCCATGTTGGTCAGGCTGGTCTCAAACTCCTGACCTCAGGTGATCTGCCTGCCTTGGCCTCCCAAAGCACTGGGA TTACAGGTGTGAGCCATCACACCCGGCCTGATTCGGTAATTCTTACAGCCCAC---AGGGGCAT-----------CATCG TTAT---------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------AGAATAACACTGAGAATGGGACTCTCCATTCAA-CCGCAAAC-AAAACTATC Pig272_LINE >L1MA9_3END -------------------------------------------------------------------------------- ----AAGAGAGTAGATCTTAAGTGTTCTCACCACACACAAAAAAA-----------------------TGGTAACTATGT GAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATC----AAAACATCACGTTG TACACCTTAAATATATACAATTTTTATTTGTCAAT--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------TATACCTCAATAAA- GCTGGAAAAA---------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---- >Sus_scrofa CATCTGACGTGGCAAGACAGAATATAGTTGGTGATACCTCAAC-----TTGAGTTT---AAGAAA------GGGACTAAA T-------------------AGAATTCTTATCACAAGGAAAAGAAAACTTTATCTATTTATTTATTTATTGTATCTGTAT GAGATGTGGG--AGGTTAACTAAACTTATTATGGTAATCATTTCAGAA--TATATGGAAGTC----AAATCATTATGCTG TGCACCTTAAACTTATTCAG-TGCTGTATGTCACT--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------TATATCTCATTAAA- ACTGGGGGGA----AAGAATGGAATAAAGT---AAATGAGAAG----------------------TAGTAAAAC------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------ATAACAATTAAGCATGTTTGATATAGT-GCCA AGCC >Bos_taurus CTTCTGATGTGGCATGACAGGATATAGTTAGTAATGCCTCAAC---ATCCCAATTT---AAGACT------AGAACTAAA C-------------------AGAGTTCTTATCACAGGGATAAAATTATTTTG-----TTTTTATTTCTTTGTATCTATAT GAAATGATGA--ATGTTAACCAAATTTATTATGGCAAGCATTTCACAA--TATATGGAAGTC----TAGTCATTA----- --CACCTTAAACGTATACAG-AGCCATATGTCACTTGCTACTGCTAAGTCGCTTCAGTCTTGTCTGACTCTGTGTGACCC CATAGACGGCAGCCCACCAGGCTCCCCTGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTTT CCAATGCATGAAAGTGAAAAGTGAAAGTGAAGTCGCTCAGTCGTGCCCGGCTCTTAGCGACCCCATGGACTGCAGCCTAC CAGGCTCCTCCGTCCATGGGATTTTCCAGGCAAGAGTACTGGGGTGGGGTGCCATTGCCTTCTCCTACATCTCATTAAA- ATTGGGGGAAA---AAGAATGAAAGAAAAT---AAATGATAAA----------------------CAGTATAACATACTG ATGAAGACTATTTGATTTACGGGACTTCCTTGGTACAGTAGATAAAAATCCATCTGCCAGTGCAGGGGACACAGGTTCAA TCCCTAGTCCGGGAAGATTCTACATGATGAAAAGCAATGAATTCTATGCTCCACAGCTACTGACCCCTTGCTCTAAAACC CATGAGCCACAACTACTGAAACCCTTGTGCTGCAGCTACTGAAGCCCATGTGCCTCGAGCCCATGCTCCCCAACAAGAGA ATCCACCGCAATGAGAAGCCTGTGCACTGCAACAAAGAGTAGCTCCCCCTCGCTGCAACTAGAGAAAGCCTGCACACAGC AGTAGAGACCCAGCACAACCAAAAATTAGTTAATTAATTAAAAGAAAAGTAGTGTTTAAAAAAAATTGATTTAGT-GCCA AAAT >Equus_caballus CCTCTGACATGGCAACACTGGGTATAGTTAGTGACAACTCAAC---TTCCCAACTT---AAGAAT------GGAACTAAA T-------------------AGAGTTCTTATCACAAGGAAAAAAC-CTTTTTTTTTCTTTTTCTTTTTTTGTAG-TATAT GAGATGATGG--ATATTAACTAAACTTACTGTGATAATCATTTCATAA--TATATGTAAGTC----AAATCATTATGCTG GACACCTTAAACTTATACAG-TGCTGTATGTCAAT--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------CATAGCTCAATAAC- ACTAGAAATA----AAAAGTGGAATTAAAT---AAATGAGAAG----------------------TGGTATAAC------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------ATAGTGATTAAGAACTTTTGATTTAGT-GCCA CACT >Ceratotherium_simum GCTCTGACGTGGCAAGACAGGGTATAGTTAGTGATA---CAAC---TTCCCAGCTT---AAGAAT------GGAACTAAA T-------------------AGAGTTCTCGTCACAAAGAAAAAAA-ACATTT-----TTTCTTTTTTTTTGTAT-TATAT GAGATGATGG--ATGTTAACTAAATTTATTGTGATAATCACTTCACAT--TATAGGTAAGTC----AAATCATTATGCTG GACACCTTAAACTTACACAG-TGCTCTATGTCAAT--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------TATATCTCAGTAAA- ACTGGAAATA----AAAAGTAGAACTAAAT---AAATGAGAAG----------------------TAGTATAAC------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------ATAGTGCTTAAGAACTTTTGGTTTAGT-GCCC AACT >Myotis_myotis CCTCGGGCATTGCCAGGCAGGGTAGTGT---TGATGCCTCAAA---TTCCCATTTT---AATAAT------AGAACTAAA T-------------------AGAGTTCTCATCACAAGGAAAAAAATACATT------TTTTTTTCTTTTTCTAACGGTAT GAGATGATGG--ATGTTAAGTAAATTTGTTGTAGTAATTATTTCACAA--CATTTTTAAGTCAAATAAATCATTATGCTC TATACCTTAAACTTACACAG-TGCTGTATGTC------------------------------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------------TCAATAAA- ACTGAA--------AAAAAAGGAATTAAAT---AACTGC----------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------ATAGTGGTTACAAAATTTTGATTTGGT-GTCA AACT >Rousettus_aegyptiacus CCTGTGACATGGAAAGAT--GGTATAGTTATTGATACCTCAAA---TTCCCAATTT---AAGAAT------GGAGCT--- --------------------AGAGTTCTCATCACAAGGAAA-----ATTTTT-----TTCTTTTTTTTTGGTATCTATAC AAGATGATGG--ATGTTAAATTAATTTGTTG---TAATTATTTTACAA--CAAACGTAAGTC----AAATTATTATGCTA TACATCTTAA------ATAG-TGCTGTATGTCACT--------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------------------------TATA--TCAATAAAC AAGGGGAAAA----AAGAATAGAATTAAGT---AAATGAGAAA----------------------TAATATAAC------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------ATAGTGGTTAAGGACATCTGAGTTAGC-GCCA AACT >Mustela_putorius_furo CTCCTGACGTGGCAAGAC-------AGTAAGCGTTGCCTGTAC---TTCGCAGTTT---AAGGGT------GAAACTAAA T------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------AAATGAGAGG----------------------CAGTATAAC------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------AAACACAATGGTTAAGAACA-TTGATTCAGT-GCCA AACT >Felis_catus CCTTTGACATGGCAAAAACAGGTAGAGTTAGTGTTACCTCTGC---TTCCCAATTT---GGAACCAATTATGTAACCAAG G------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------AAATGAGAGGCCAGATGTCAAGTGCACTAACATAGTATAAC------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------AAACATAGTGGCTAAGAACA-TTGATTTAGT-GCCA AACT >Manis_javanica CCTCTGACATGGCAAGACAGGGTAGTGATACCATCACCCT-----------AGTTT---AGGACTG------GAACTAAA T------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------AAATGAGAAA----------------------TAGTATAAC------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------AAACATAGTCACTAAGAACATTTGATTTAGT-ACCC AACT >Condylura_cristata CCTCTGACATGGCAAGACTGTCTATAGTTAGTGATATCTTAAT---TTCCCAATTT---AAGAAT------GGAACTAAA C------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------AAATGAAAAG----------------------TTGT-TAAT------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------ATGATCGCTAAGAATATTTGACTTAAT-ATCA AACT >Sorex_araneus CCTCTGATAT-GCAAAGTGGGGTACAGTTAATGATTCCTTTACACTCTCCCAACTT---TAA-ATGAGAGT-TATTTCTA T------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------AGATAAGAAA----------------------GGATATAGC------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------ATGATGTTTAAGAATTTTTATGTCTAT--CCA -GCT >Homo_sapiens CCTCTGCCATGGCAAGACAAAGTATAGTTAGTGGTACACCAAC---TTCCCAATTT---AATAAT------GAAACTAGT T------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------AAATGGGAAG----------------------TGGTATAAA------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------ATAGTGATTAAGAGCCTTTGATTTTACAGCCA AACT Pig275_LINE >L1MA9_3END -------------------------------------------------------------------------------- -----TTGATTGTGGTAATCATTTCACAATGTATAC--GTATATCAAAAC-------------ATCACGTTGTACACCTT AAAT-ATATACAATTTTTATTTGTCAATTATACCTCAATAAAGCTGGAAAAA---------------------------- ------------------------------------------------- >Sus_scrofa TTAT---TTCTTATGATATTACTCTTCCTCC-ATTATACAACCATCCAAGCAACAC-----TTTTAAAA-----ACTACT CT---------------CTCATTTCACAGTATATACATATATACCAAATA-------------ATTGTGCTGTACACCTA AAAC-TGGTACAG-CATTATATGCCAATTCTATCCCAAT----------------TTTTAAAAATCACTCT---AGTATT --GCAATAAATGTCAATTTTAAATCCTGTATTATTTAGG-----GGCCT >Bos_taurus TTATCATTTTACATAATATTATCCTTCCT---GTTATATAACCACCCAAGCAACAC-----TTTTAAAA-----ATAACT CT---------------ATCATTACACAGTATATAC--ATTAATCAAATA-------------ATCATATTAT-----TA AAAC-AAATACAT-TGGTATATGTCAATTATACCTCAGT----------------TTTTAAAAATTACTCT---ATTGTT CCATATAAATT-TCAATTTAGAATCCATTATTACCTTGA-----GGCCT >Equus_caballus TTATCATTTCCTATAA----GTTCTTCCTTT-ATT-TACAACTACCTAAGCAAC--A----ATTTAAAA-----GTCACT TT---------------ATCATTTCACAGTATATAC--ATATATCAAATC-------------ATTATGCTGTACACCTA AAAC-CAATA----CGTTATATGTCAATTACATCTCAA-----------------TAAAAAAAGTCACTTT---AGTGTT CTGTATGAATTTTCAATTTTAAATCCTTTATTATTTGGG-----GGCCT >Ceratotherium_simum TTATTGCTTCATATAA---TATTCTTCCTCT-ATTATACAACCATCCAAGCAGCAT-----TTTTAAAA-----ATCACG TT---------------ATCATTTCACAGTATATAC--ATATATCAAATC-------------ATTATGTTGTACACCTA AAAC-TAATACAA-CGTTATATGACAATTACATCTCAA-----------------TAAAAATAATCACTTT---AGTGTT CTGTATGAATTTTCAACTTTAAATCTTTTATCATTTGGG-----GGCCT >Myotis_myotis TTATAAGTTTATA-AGTATTATTCATCTTCG-ATTTTACAACCA----AGCAACATA----TTTTAAAA-----ATCACA TT---------------ATAATTTCTCAGTATGTAC--ATATATCAGGTC-------------ATTGTGTTATACACCTA AAACTTAATCCAA-TGT--TATGTTAATTATATCTCCA-----------------CTTAAAAAATCACTTT---AGTGTT CTGTATGAATTTTCCATTTTAAATTCTTTCTTATTTGGG-----AGCTT >Rousettus_aegyptiacus TTATCGCTTCATATAA--TTATTCTTCCTCT-ATTATATAACCATTCAAGCAACA------TTTT--------------- -----------------ATCATTTCTCAGTATATACATATATATCATATAAATGATATATCAAATCATTGTATACACCTA AAAC-TGATA----CGTTATATGTTCATTACATCTTAA-----------------TTTTAAAAATCACGTT---AGTGTT CTTTATGAATTTCTGGTTTTAAATTCTTTCTTATTTGGA-----GGCTT >Canis_familiaris TTATCCCTTCATATAATATTATTCTTTCTCT-ATCATACAATCATTTGAGCAATGT-----TTTAAAAA-----ATTACT TC------------------------------------------------------------------------------ --------------------------------------------------------------------------AGTGTT C--TATGAATTTTTAGTTTTAAATCCTTTCTTATTTGGG-----GCCCT >Felis_catus TTGTCACTTCGTATAATATTATTCTTTCTCT-GTTATATAACCATTCAAGCAAGTAAT---TTTTAAAA-----ATTACT TT------------------------------------------------------------------------------ --------------------------------------------------------------------------AGTCCT C--TATGAATTGTCAGTTTTAAATCCTTTATTATTTGGG-----GCCCT >Manis_javanica TTATCACTTCATGTAATATT----TTTGTCT-ATTATACAACCATTCAACCCATG------TTTTAAAAAAAAAATCACT TG------------------------------------------------------------------------------ --------------------------------------------------------------------------AGTGCT CTGTG-GACTTTTCAATTTTCAGTCCTTTATTGTTTGAG-----GGACT >Condylura_cristata TTATCTTGATATGTAATATTATTCTTCCTTT-ATTATAAAACCATCCAAACAAGA------TTTTAAAA-----TACCCT TT------------------------------------------------------------------------------ --------------------------------------------------------------------------AGTGTT CTATATGAATTTTCAATTTTAAATCCTCGGTTACTTGGG-----GACCT >Sorex_araneus TTATTACTGTCTACAATATTATCTTTTTC---ACCCTTTCACAATATCAATAATAT-----ATTTAAAA-----TTTAAT CT------------------------------------------------------------------------------ --------------------------------------------------------------------------AATGTT CTTTGTAAAATAGCTATTTTAAATCTGTCATTATTTGGGCAGGAAACCT >Homo_sapiens TTATCACTTGATGTAATAGCATTATTCCTCTGATTATATCACCAACTGAACAGCA------CTTCAAAA-----ATTACT AT------------------------------------------------------------------------------ --------------------------------------------------------------------------AGTGCT CTGTATATATCTTTAATTTTAAATCCTTTATTATTTGGG-----GGCCT Pig297_LINE >L1MA9_3END -------------------------------------------------------------------------------- ---------------------------------------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATT GTATATATTTAAGGTGTACAACG-TGATGTTTT-GATATACGTATACATTGTGAAATGATTACCACAATCAAGC----TA ATTAACATATCCATCACCTCAC----ATAGTTACCAT-TTTTTTGTGTGTGGT----------GAGAACACTT------- ---AAGATC-TACTCTCTTAGCAAATTTCAAGTATACA---------------------ATACAGTATTAT--------- ----TAACTATAGTCACCATGCTGTACATTAGATCTCCAGAACTTATTCATCCTGCATAACTGAAACTTTGTACCCTTTG ACCAACATCTCCCCATTTCCCCCACCCCCCAGC----------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------------ >Sus_scrofa GAAGATGCTG--GGAGGTCTTCCCAAAGGTTTGGTAAAGCAATGAAGGTGA----CTT---TGCCTGGGCCACCATTTTT --------------------------TGGTTGAGTATTTTATTA--TTTTTTATTGAGACATAACTGGCACACAACA--- ----TTGCTTAAGGTATAAAATG-TGTTGATTT-TATTCATTTATATACTGAAATAAGCTAACCAACAA--ACCCTTATA GCAAATACCTCTGTCATCTCAC----ATAATTACCATTTATTTTTCTTGTGGT----------GAGATCATTT------- ---AAAGTC-TAGTCTCTTAGCAGCTTTGGAGTATATA---------------------ATACTGTACTGT--------- ----TGACTATAATCACTATTCTGTGCTTTAGAGATCTATAACTTGTTCATCTT--CTAATTGCAAGTTTGCCCCTTTTC TCCAGCAACTCTCTCCAACTCTTTTTTTTTTTTTTCCTTTTTTTTTAGGGCTGTACCTTTGGCATATGGAAGTCCCTGGC TAGGGGTTGAATTGGAGCTGCAGCTGCTGGCCTACACCACAACCACAGCAATGCCAAATCTGAGCCGTGTCTGTGACCTA CACCACAGCTTAGATCCTTAACCCATTGAGCAAAGCCAGGGGTTGAACCTGTATCCTCATGGATGCCAGTCGGGCTTGAA ACCACTGAGTCACAATGGGAACT---TCCCCCAGTTCCAATTCT---TCATTGCAGATCTTCAA----GGACAA------ ---------------GAGAAGAAAACAAGGGTAGGGAGTAATATTAGGGTC---TACAAA >Bos_taurus GT-GTTGGTG--AAGGGTCTTTCCAAAGGTTAGGTAAGGCAATGAAGATAG----CTT---TGCCTAAGTCACAGTTTTG ---TTTTGTTTTGTTTTTTTGGGGGGTGACTGTGTATTTTATTA--TTTTTTATTGAGATATAATTGGCACGTAACA--- ----TTGTTTAGGGTGTACAGTG-TATTGATTT-GATACATTTATTTATCACAAGAAGCTTACCACCAT--AGTCCTACA GCTGACACCTTTATCACCTCAC----ATAGTTATCAT-TTCGTTTTTTGTGGT----------GAGATCATTT------- ---AAAGTCTTAAACTCTTGGCAGCTTTGATGTATACA---------------------GCACAGTGCTGT--------- ----CGACTGTGAGAACCATGCTGT-CTCCAGAGCTCCAGAATGTACTCATCTT--CTAATTGCAAGTCTGTACCCTTTC TCCAGCATC----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------TCCCTAATTCCATTTCT---TCATCACAGATCTCCAA----GGACAA------ ---------------GAGAAGAAAACAGGGGTTGGGAGTAATATTAGAATT---TACAAA >Equus_caballus GAAGATGGTG--GAGGGTCTTTCCAAAAGTCTGGTGAAACATTGAAGATAA----CTT---TGCCTAAGTTGTAATTCTT --------------------------------TTTTTTGATTATTTTATTTTTTTGAGATGTAATTGATATATAA----- ------ATTTAAGGTGTACCATA-TGTTGATTTATATACATTTATATATTGCAATATGCTTATCACCAT--AGCTT--TA GCTAACAC-TGTATCACATCAC----ATAATTA-----TTTCTTTTTTATGGT----------GAGAACACTT------- ---AGGGTC-TAGTCTGTTAGCAACTTTTAAGTAAATA---------------------ATATAAGACTGT--------- ----TGACTATAATGACTATGCTGCACATTAGATCTCCAGAACTTATTCATCTT--CTAATTGCAAGTTTGCACCCTTTG ACCAACATC----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------TCCCTAGTTCCCAATTCT---TCATTGCAGATCTCTAA----GGACAA------ ---------------GAGAAGAAAACAGGGATTGGAAGTACTATTAGGATC---TACAAA >Ceratotherium_simum GAAGATGGTG--GAGGGTCTTTCCAAAGGTCTGGTAGAACAGTGAAGATAA----CTT---TGCCTAAGTTGCAATTCTT ------------------TTTTTGTTTGGTTGCTTATTTTATTATTTTTTTTATTGAGATGTAATTGATATATGA----- ------GTTTAAGGTGTACAATA-TGTTGATTTATAAACATTTATATGTTGTGACATGCTTACCACCAT--AGCCT--TA GCTAACACCTCCATCACTTCAC----ATAATTA-----TTTCTTTTTTATGGT----------AAGAACATTT------- ---AAGGTC--------TTAGCAACTTTGAATCATATA---------------------ACAC-GTGCTGT--------- ----TGACTATAATCACTATGCTATGCATTAGATCTCCAGAATTTATTCATCTT--CTAATTGCAAGTTTGTACTCTTTG ACCAACATC----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------TCCCCAATTCCCAATCCT---TCATTGCAGATCCCTAA----GGACAA------ ---------------GAGAAGGAAACATGGGTTGGAAGTACTATTAGGATC---TACAAA >Condylura_cristata GAAGGTGGGG--GAGGATCTTTCCAAAGATTTAAAGGAACATTGAAGAAGATCACTTT---TACCTAAGTCAAAATGCTT -------------------------------------TGTTGTTATTACTGTATTGGGATCTAACTGACAAATAACA-TG GTGTAAGTTTTAGTTGTACACTG-TGTCCATT--GCTGCATTTATATATCCCAATTTGTTT-CCACCAG------TCACA GCTAACACTTCTGCCCCATCAC-GTCACATGTG-----CTTTTTTTTTATACT----------------ATTTTTTTTAC TAAAAAGTT-TATTTTTACATCATTTTGCAAATGCCCACATGTGCTTTTTTTATGATCTACATAATCATCTATACGTAGT CAAGTGACTATCATCACTATGCTATGTATGAGATC--------GTATCTATCTT--CTAATGGGGAGTTTGTATCCTTTG ACCAACATC----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------TTCCTAATTCTCAATGCT---TTACTACAGATATCCAA----GGACAA------ ---------------AAGAAGAAAAGAGTAGTAGGGAGTAACATTAGAATCTGTTATACA >Erinaceus_europaeus GAAAATGGT---GAAAGTCATCCCAAAGATTTGGTAAAATATTAGAGATAA----TTA-------TAAGTCATAGTTCTT ----------------------------TTTTTTTATTCGATTA--CTTTTTATTGAGATGTCATTGACATATAACA-TC ATGTAAGTTTAATGTTTGCAGCACTGTTGATTT-GCTGCATTTGTATTTTTCGATAGGCTTATTGCGT---AGTC---TG AGCAAGACCTTT-TCACTGCACTAATATAATTA-----TTTATATTCTGTGGCAAAAAACACAAAAAACAATT------- ---AAGGTC-TAGTTTCCAGTTAGCTTTCAAATACATA---------------------GTGCAGCACTAT--------- ----TGACTAT----ATTGTGTTGTGCATTCAGTCTTCAGAATTTATCTGTCCT--CTCATTGTAAATGTGTAC-TTTCC ATGAACATC----------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------TCCATAATTTTCAATTCT---TTATTG-AAAGCTCCAA----GGAGAA------ ---------------GATAATTGAAGAGGGTAGGGAA--AATATTAGTGTT---CACCGA >Canis_familiaris GAAGACGGCA--AAGGGTCTTTCCAAATGTTTGGTAGAATATTGAGAATAA----CTT---TGCCTAAGTCACAATTCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------ACACTGCAGATATCCAATCTGAGATAA------ ---------------GAAAAGGAAACGTGGGTAGGG-------------CC---TATAAA >Felis_catus GTAGATGGTA--GAGGGTCTTTCCAAACATTTGGTAGAGCACTGAGAACAA----CTT---TGTCTAAGTCACAATTCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------ACATTGCAGATACCCAA----GGATAAGGTGGG GGGGGGGGATGGAGGGGTGGGAAGACACGGGTAGGAAGTAAT-TTAGGGCC---TACAAA >Manis_pentadactyla GAAGCTGGTGGAGAGAGTCTTTTCAACAGTTTAGTAGAGCATTGATGATAA----TTT---TGCTTAAGCTACTATTATT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------ATATTGCAGATCTACAA----GGATAA------ ---------------AAGAAGAAAATAGGGGTAGGGAATAATATTAGAGTA---TACAAA >Myotis_myotis GAAGATGGTG--GAGGGTCTTTCCAAAGGTTTGGTAGAGCATTGAAGATAA----CT-----GCCTAAGTCACAGTTCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------ATATTGCAGAACGCTGA----GGATAA------ ---------------GAGAAGAAACCAGGGGGAGGGAATAATATCCG--TC---TACAAA >Rousettus_aegyptiacus GAAGATGGTA--TTGGGTCTCTCCAAAGGTTGGGTAGAGCATTAAAGATAA----CAT---TGCCTAGTTCACGATTCTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------ACCTTGCTGATCTCCAA----GAATAA------ ---------------GAGAAGAAAACAGGGCTAAGGAGTAATAT--GTGTC---TACAAA >Homo_sapiens AAAGATGG----GAAAATCTTTCCAAAGGTATGGTAGAGTATGAAAGATAA----CTT---TGCCTGGGTCACAATTC-T -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------------------GTCT-GCAGATCTCCAA----GGGCAA------ ---------------CAGAAGAAAACAGGAATAGGG-GTAATATTAGTGTC---TATACA Pig355_LINE >L1MA9_3END ----------------------------------------------------------------------------GAGT AGATCTTAAG--------------TGTTCTCACCAC---ACACAAAAAAA--------------TGGTAACTATGTGAG- GTGATGGA--TATGTTAATTAGCTTGATTGTGGTA--------ATCATTTCACAATGTATA------CGTATA------- TCAAAACAT---------CACGTTGTA------CACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAATAAA GCTGGA------AAAA---------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------- >Sus_scrofa CGAATTGTCCACCCACCTGCTTTGTAGTGA-TCTCAACTCTACAGAGACACTT---GGACAATTTTAAAGGAA------- ----CATAAA--------------TGTTCTTGCCAA---AAAAAAAAAAAAAAAAAGAAAAAAGTGATAAGTATGTGAA- GTGATGGA--TGTGTTAATTAACTAGATGGTGTGG----GAAGATCCTTTCACAAT------------ATGTA------- TCAAATTAC---------TACTTTATG------CACTTTAAATGTCTTACAGTTTCATTTGTCAGTTATACCTGAGTAAA ACTGAAATTAGAATAATGAAAGCAAAAAACTAAG---GGCAAACATCATAGAAG-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------GA---GTGTTAATTTTAACCACTGAGGCAAAGTACA TTTTCTCAGGCAGCATCATGTTCGTT >Bos_taurus TGAAGTCTATATCCATCTGCTTTTCACTGA-CCTCAGCTCTGCAGAGACAATT---AGGCATTTGTAAAGGAA------- ----CTTAAA--------------TGTTCTTACCAA---AAAAAAAAAAAGA-----------------------TGAA- GTGATGAATGTGTGTTAAGTAACTAGATGGGGAGG------AAATCCTTTCACAGT------------ATATA------- TCAAGTTAC---------CACCATGTA------TACTTTAAGTATCTTACAATTTTATTTATCAGTTATACCTCAGTAAA ACTGAAATTTAAAAAA--GAAACAAAAGACT-AT---GGGAAAAATAATAAAAGTAGTGTCAGTTTTTTTTAAGGGCTTC CCTGGTGGCTCAGATGGTAAAGAATCTGCCTCCTATATACAGGAGACCTGAGTTTGATCCCTGGGTTGGGAAGATTCTGG AGAAGGAAATGGCAACCCACTCCAGTATTCTTTCCATGGAGAGAGGAGCCTCTCAGGGGGCTACAGTCCATGGGGTCCCA AAGAGTTGGACACAACTGAGCTATGGATCATATCGTGAAATCGTGA---GTGTCCATTTTAACTAGTGAGGAAAAGCATT TCCTTTTTGGAAATGCTGCTTTCCTT >Equus_caballus TGAAGTCTCCATCCAGCTGCTCTTCGGTGG-CCTCAACTCTGCAGAGTTC---------CATTTTTAAAGGAA------- ----GTTAAA--------------TGTTTTCACCCA---AAATAAA-------------------------TAAGTAAA- GTGATGGA--AGTGTTAATTAACTAGATTGGGAGAGAGTGGGAATTCTTTCACAATGTATA------AGTATA------- GCACATCAC---------CACAAAGTA------CGCTTTAAATATCTTACAATTTTATTTGTCAATTATACCTCAGT-AA GTTGAAAT----AAAA--GAAACAGAGAATTAAG---GGGAAAAATAGTAAAGG-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------AA---GTGTTAATTTCAGCCAGTGAAGCAAAGCACA GTTTTTCGGGGAATGTTACATCTTTT >Tapirus_indicus CAAAGTCTCCATCCGGCTGCTCTGCAGCAG-CCTCAATTCTGCAGAGACTGTT---GGGCATTTCTAAAGGAA------- ----GTTAAA--------------TGTTTTCACCCA---AAATAAATAAG-----------------TAGGTAAGTAAA- GTGATAGA--TGTGTTAGTTAACTAGATGGGGGGC-----GGGATTCTTTCACAATGTATA------AATATA------- TCAAATCAC---------CACGATGTA------CACTTTAAATATCTTACAATTTTG----TCAGTTATACCTCAAAAAA GCTGAAAT----AAAA--GAAACAAAGAATTAAG---GGGAAAAATAATAAAGG-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------AA---GTGTTCATTTTAGTTAGTGAGGCAAAGCACA CTTTTCCAGGCAATGTTGCGTCTCTT >Myotis_myotis TGAAGTCTTCATCCAACTGTTTTGCAGTGG-ACTCAACTCTTCAGAGACTGTT---GGGAATTTTTAAAGAAA------- ----CTTAAG--------------TGTTCTAA---A---AGATAAA-------------------------TATGTGAAG GTGATGGA--TATATTAATTAATAATATGTGGGGG------TGATCCTTTTACAATGTATA-------ACATA------- GCAAATAAC---------CATGATGTA------CACTTCAAATATCTTACAATTCTATTTGTTAATTATACCTCAATAAA ACTGGGG-----AAAA--AGCCCAAAGAACT------GGAAAAGAT---------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------AA---GTGTTAATTTTAGCCAGTGAGGCAAAGAACA CTTCTTCAAGTAATGTTGCATCCCTT >Rousettus_aegyptiacus TCAAGTCTCCATTCAGCTGCTTTGCAGCAG-CCTCAGCTCTTCAGAGACT-------GGTGTTTTTAAAAGAG------- ----CTTGAA--------------TGTTTTCACACACACACACAAAAAAG------------------------------ ATGACGAA--TGTGTTAATTAACTATATGGGGAGG-------GATCCTTTCACTATATGTGTGTG--TGTGTG------- TGTAATCAC---------CACAATGTA------CACTTCAGGTATCTTCCAATTTTATTTGTCAATTATACTTCAATAAA GCTGAAAAAAAAAAAA---ACCTAAAGAACTAAG---GGGAAAAATAATTTTTTAA------------------------ -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------AA---ATGTTAGCTTTAGCCAGTGATGTATAGCATA CTTTTCCAGGTGACATCGCATTCCTT >Condylura_cristata TGAAGTCTCCTTCCCGCTGATCTGCAGGGA-CCTCAGTTCTGCAGAAACTGTT---GGGCATTTGTGAAGGAA------- ----CTTAAACAAAATCTTGTTGTTGTTTTTTTTTTTTTAAGTAAA-----------------------------TGGG- GTGATGGA--TGTGTCGGTAAGCTACATGGGTGGG-----GGCATCCTTTTCCAGTGCACTCCAAATTATATACTCTATG TCAAGTTAC---------CAC-ATGTG------CAGCTTAAAGATCTGACACATTTAGCCACCAGTTAGACTTTAGTGAA GCTGACATTAACAAGA---AGAAAAAACTTCAAG---GGGAAAAATAATAAAAG-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------AT---GTGTTGATCTTAGCCAGTGAGGCAAAGCA-- GTTTTCCAGGTTAGACTGCCTCCCTA >Uropsilus_gracilis TG--GTCTCCATCTTGCTGATCTGAAGGAACCCCCAACTCTGCAGAAACTGAT---AGGCATTTGAGCAGGAA------- ----TTTAAA--TCTTGTTTTCTTTTTTTTTTTTTA---AGGTAAA-------------------------TGAATGGG- GTGATGAA--TATGATAATCAACTAGATGGGGGGT---TGTAAATCCTTTCACAATGCATTCCAGATTATGTA------- TCTATATATACATGTGCACACATTATATAAAATTACTTTAACTAGCTCATAAATTTG----TCATTTATACCTTAGCAAA GGTGACATTAAAAAAA-AAAAGAGAAAAACTAAG---GGGGAAATATAATAATA-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------AAATAA---GTGTTCATTCTAGCCAATGAGGCAAAGCACA GTTTTTCAGATTTTACTCTCTCCCTT >Canis_familiaris TGAAATCTCCATCTAGCTGCTCTGCAGCGA------------------CTCTT--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------GGGAA--TTTTTAAAGA-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------AA---ATGGTAATTTTAGCCAG-------------- -----------------GCATCTTTT >Ailuropoda_melanoleuca TGAAGTCTCCCTCCCGCTGCTCTGCAACTG-GCTCCTCTC-GCAGAGACTCTG--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------GGGCA--TTTTTGAAGC-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------AA---ATGGTACTTTTAGCCGGTGAGGCAAAACACG CTTTTTCAGGCAACATTGCATCTCTT >Manis_javanica TGAAGTCTCCATCCAGCTGCTCTACAGTGC-CTTCAACTCTGCAGACACTGTT--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------TGGCA--TCTTTAAAGA-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------AA---GTGTTCATTTTAGCCAGTGAGG--------A CTCCTAAAGGCAGCATCGCATCCCGT >Homo_sapiens TGAAGTCTTTATCCTGCTGCTTTGTAGCAG-CCTCAACTCTGCAGACACTTTT--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------GGACA--TTTTTAAAGG-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------AA---ATGTTCATTTTAACCATTTAGGCAAGGCATA CTTTTGAAAGCAACATTGTATCCCAT Pig373_LINE >L1MA9_3end ---------------------------------------------------------------------AGCATGGTGAC TATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGA----------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------GTAGATCTTAAG-TGTTC-TCACCACACACAAAAAAATGGTAACTATGTGAGGTGATGGATAT GTTAATTAGCTTGATTGTGGTAATCATTTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATAT-ATA CAATTTTTATTTGTCAATTATACCTCA---ATAAAGCTGGAAAAA----------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------- >Sus_scrofa AAAATCTGCATGTCACAATATATATCGACCCTTCCTCGCT--TTACTGAGTT---AAATCTTATAA-------------- -ATGGTCAATAACGCTGTATTATATCCTT--------CTAAGAGA----------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------CTGGATCCTAAG-TGTTC-TTACCACACACACAAAA--GAAAAGTATGTGGCATGACAGACCT ATTAGCCAAGGCTATGACGGTAGTCATGTTGCAACATGTAATTGTATCGAATAAGCAT-TTAGACACCTTCAACTT-ACA CAATGTTATGTGTCAATTATATTTCAGGTTTTAAAA------------ACATCTCATAATTG---AA-----TCTTAGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------TGATATTTTTC-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------CATCGCTGTTAGGTTGGAATGTCAGCATTTCACA------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------TCATCCCTGTTTGATTTTC >Bos_taurus AAAACCTGTATTCCACCATGTATATTGACCCTTCTTAACT--TTACGCAGTT---AAAACTGAAAA-------------- -TTGGTCAATAAAACTGTATTAAATACTTCAAAAGTACAAAGAGGGACTCCCCTGGCAGTCCAGTGGTTAAGACTCCACA CTTCCAGTGTGAGGGCTGCAGGTTCAACCCCTAGTCGAGGAATTAAGATCCCACATGCTGCACAGAGCGGCCAAAGAACA AAAATTTAAAAAGTGCTGAGATA--------------------------------------------------------- -----------------CTAGATCTGAAA-TGTTTGTCATCACATACAAAGAA--GATAAGTATGTGACGTGACAGAGAT ATTAGTTCAGGCTGTGATGGTAATCACATTACAACATATAAATGTATCAAATCAGCACGCTGTACACCTTAAACTT-ATA CAGTGTTATATGTCAGTGATAGCTCAA---TTAAA-------------AAATCTCATAATTG---AA------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------TTTTTT-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------CATAGCTATTAAATTGTAATATCAGCATTTTACA------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------CAATCTCTATT--ATTTTC >Equus_caballus AAAACCCATATGTCACAATATATATTCACTCTCCCTGACT--TTACTCAATT---AAATCTTATAA-------------- -TTGGTCAACAGCACTGTATTAAATACTTCAAAATTGCTAAGAGA----------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------CTAGATCTTAAA-TGTTC-TCACCACAAAAAAGAAA-TGGTAACGATGTGACAGGACAGAGGT GTAAGCTAAAGCCATGGTGGTGATCATATCGCAACAGATAAATGTATTACATCAATATGTTGTACACCTTAAACAT-ATA CAATGT--TATTTCTGTTATAGCTCAA----TAAA-------------AAGTCTTATAATTG---AA-----TCTTAGAC -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------TGTTATTTTTT-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------CATTGCTACTAAGTTGTACTATCAGCATTTCACA------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------CAATCTCTATTTGATTTTC >Ceratotherium_simum AAAACCTGCATGTCACAACACATATAGACCTTTCCTTACT--TTACTCAATT---AAATCCTGTAA-------------- -TTGGTCAACGGCACTGTATTATACACTTCAAAATTGCTAAGAGA----------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------CTAGCTCTTAAA-TGTTC-TCACCACAAAGAAGAAA-TGATAATTATGTGACGTGATGGAGGT ATTAGCTAACACTGTGGTGGTAATCATATTGCAATAAATAAATGTATCAAATGAACACATTGTACACCTTAACCTT-ACA CAATGT--TATGTCAGTTATATCTCAA----TAAA-------------AAATCTTATAATTG---AA-----CCTTAGAT TGTTATTTTTTTCTCTTTTTTGGTGAGGAAGTCTGGACCTGAGCTAACATCTGTGCCCATCTTCCTCTATTTTGTATGTG GGACGCCACCACAGCATGGCTTGATGAGCGGTGCATAGGTCCATGCCGGGATCCAAACCTGTGTACCCCGGGCCCGTGAA TAGGAGTGCGCGAACTTAACCACTACGCCACTGGGCCAGCCCCTGTTATTTTTT-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------CATTGCTATTTAATTGTAATATCAGCATTTCACA------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------CAATTGCTATTTGATTTTC >Myotis_myotis GGACTCCATTTGTCACAATTTATAGGGACCCTTCCTGATT--TTATTTGATC---AA-TCTCACAA-------------- -CTGGTCAACAACCCTACATCATGTACTTCTAAATTCCTAAGGGATTAGACCAGGGGTCCTTAAACTTTTTAAACAGGGG CCAGTTCACTGTCCCTCAGACCGTTGGAGGGCTGGACTATAGTTTAAAAAAAAACTATGAACAAATTCCTATGCACACTG CACATATCTTATTTTGAAGTAAAAAAACCAAAACGGGAACAAATACACTATTTGTATTTGCATGTGGCCCGCGGGCCGTA GTTTGAGGACCCCTGGATTAGATCTTCAA-TGTTC-TCACCACGAAAAAGAAA-GGATAATTTTGTGGTGTGATTGAGGT GTAAGCGAAAGCTATGGCAGTAACCATATTGCAGTATGTAAATGTATAACACCGGCAGGCTGCACACCCGAAGCCT-CCA CGTTGTTGTATGTCATCTCTAGCTCAA----TAAAA------------ATATCTCATAA-TG---AAAAAAATCTTAGCT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------TGTCATTTTT--------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------CACTGCCATTAAGTTGTAATATCAGCATTTTACA------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------CAATCCCTATTTGATTTTC >Rousettus_aegyptiacus GACATCCATATATCACAATATATATTGACCCTTCCTGACT--ATGCTAAATT---AAATC--ATAA-------------- -TTGGGCAATAATGCTGTATTATATACTTCAATATTGCTAAGAGA----------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------CTAGATCTTAAA-TGTCC-TCACCACAAAAAAG------------AAATGACCTGATAGAGGT ATTAGCTAAATCTGTGGTGG-AATCATCTTGCAATATATAAATGTAGCAAATCAGC-------ACACCTTAAACTT-ACA CAATATCATATGTCAGTTACATCTCAA----TACAA------------AAACCTTATAATTG---AA-----TCTTAAAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------TGGTATTTTTT-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------CACGAC--TTAAGTCGTAAT-TTGGTATTTTACA------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------CAA-CCCTATTTGATTTTC >Condylura_cristata AGAAAATTCATGTTACAATGCGTATTTCTCCCCCCTAATT--TTACTCAATT---AAATCTTACTG-------------- -TTGCACAATAATACTGCATATAGAA-TTCAAAGTTGCTAGGAGA----------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------CCGGGTCTGGGGATGTGC-TCACAGCA-AAACAAAA-CCATAGTTTTGTGACGCAATGGAGGT GTGAGCTGAAGTTGGGGAGCTAGCTGGGGTGCTGTTGATAAGTGAAGTGGATGAA------------CTTGAACTCAACA GAGAGTGCGAGGTCAA----ACCTCAA-----GAA-------------AAAAATCTTA-TTG---AA-----TCTCAGTT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------TATTATTACTT-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------CAATGCTATCAAACTCT-CTCTATATATTTTTTAAAGTTTA TTCTGTATGCATATAGAACTGGGGTACAGGCCAGAGGTGAACTGGGGTACAGGCGGGGGCGGTGAGAGGATTCACCAGAG ACAGAGTGGGGGGCCTAACAGGCAGGCTGACGAAGTACACCGCTGAGGGGAGCAGCGGGGGTCAGGAGAGGTCTGCCGCG CCTTGTGGTCACCTTCAGGGCCTCAGCTAAGGGGCTGCAGCCAGCTTGCAGTGCTGTAACCCACTGCTCCCCAGGGAGGG CCTCAAAGTTACCAAAGTCTAACATTTGCAAGTCTAACATTTGCACTGCGGGCAGTCTCTATTTGGTCTTC >Erinaceus_europaeus GAAACCTATGTGCCACAACATATATTGC--TTTTCTGACT--TCACACAATC---AAGTTACATAT-------------- --TGGTCAATAATATTGTATAACGTATTTTCAGATTGCTAAGAGN----------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN-------------NNNNNNNNNNNNNN---NN-----NNNNNNNN -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------NNNNNNNNNNN-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------NNNNNNNNNNNNNNNNN-NNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN >Canis_familiaris AAAACACATATGCCACAATAAATATTGACCCTTCCTGACTGACTCCTCAATG---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------AAATCTTATAAGTG---AA-----TCTTG--- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------GTTATTTCTT-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------CGTTGTTATTAAATTGTCATATCAGCACTTCACA------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------C--TCTCTATTTGGTTTTC >Felis_catus AAAACGCATATGCCACAATATCCATTGACCCTTCCTGACT----ACTCACTC---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------AAATCTTACAACTG---AA-----T------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------GTTACTTTTTTGT----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------CGTTGTTGTTAAGTTGTGGTATCAGCACTTTACC------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------CCGTCCCCATTTGGTTTGC >Manis_javanica AACACCCATAAGTGACAACACATATTGACTCATTTTAACA--TTGCTCAATT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------AAATCTTATAACTG---AA-----TCTTAGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------TGTTATTTTTTAAT----------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------GACTATTACA---CTGCAGTATCAGAATTTCACA------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------AAGTCCCTGTTTGGTTTGC >Homo_sapiens AAAGTACATATGACATGGTATATATTGACCCTTCCTGACT--TTATTCAATT---------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------AAATATTATAATTG---AC-----TATTAGAT -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------GGTTATTTCTTTATTGCTGTTAATTTTTTTTTTTTTT TGAGACAGTCTCTCTCTATTGCCCAGGCTGGAGTGCAGTGGCGCAATCTCGGCTCACTGCAAGCTCCGCCTCCCTGGTTC ACACCATTCTCCTGCCTTAGCTTCCCGAGTAGTTGGGACTACAGGTGCCTGCCACCACGCCCGGCTAATTTTGGTATTTT TAGTAGAGACGGGGTTTCACCTTGTTAGCCAGGATGGTCTCGATCTCCTGACCTTGTGATCTGCCTGCTTCAGCCTCCCA AAGTGCTGGGATTACAGGCGTGAGCCACTGCACCTGGCCTATTGCTATTAAATTTTAACATCAGCATTTCACA------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------TAGTCCCTATTTGGCTTTC Pig409_LINE >L1MA9_3END -------------------------------------------------------------------------------- -------------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACGTG- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------ATGTTTTGATATACGTATACATT GTGAAATGATTACCACAATCAAGCTAATT-AACATATCCATCACCTCACATAGTT---ACCATTTTTTTGTGTGTGGTGA GAACACTTAAGATCTACTCTCTTAGCAAATTTCAAGTATACAATACAGTATTATTAACTATAGTCACCATGCTGTACATT ---AGATCTCCAGAACTT-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------ATTCATCCTGCATAACTGAAACTTTGTACCCTTTGACCAA---------------------- ------------------------------------------------------------------- >Sus_scrofa GTGGCTCAAGCTACTCTACTTGAAAAGAAAAAAAT--GAGCTTTTGAATGTTT---ACCTTTCATCCTTTTTTCT---TT CTTTGACATTTTGATTT----ATTTTATTGTGATATAATTGACATGT-AACA---TATTAGTTTCAGGTGTACAACATA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------ATGATTCAAAATTTGTATGTACT AAGAAATGATCACCATA--------AGTCTAAC--ATCTGCCACCATATGTAGTT-ACAAAACATTTTTTCTTACGATAA GAGCTTTTAAGATC----TTCTTAGCAACTTTCAAATATGCAATATAGCATTATTAGCTATTGTCACCATACTGTATGAG ---TCACCCCCATGATTG-TGTATTTTATAACTGGTCTC----------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------ATGTATTTTATAACTAG------------------------ACTTTCAGCCATTT----C CAGTGTTT-----------ATACAGGCCTTTTACATGGTT-----AACATGAATTTATATTCACTAT >Tursiops_truncatus GTAGCTGAAACCACTCTACTGGAAAAGGAAAAAAC--GAACTTCAAAATGTTT---ACCTCTCATTCTTTTTT------- ---TGACATTTTAATTT----ATTTCATTGTGATGTAATTGACATAT-AACAC--TATTAGTTTCAGGTATACAACATAA ATGATTTGAATTTTTTTATAAATTTATTTTTATTTTTTTCTTTCTTTATTTTTGGCTGCATTGGGTCTTCGTTGCTGCAT GAGAGCTTTCTCTAGTTGCAGCGAGCGAGGGCTACTCTTTGTTGTGGTGCGCGGCTTCTCATTGTGGTGGCTTCCCTTGC CGCGGAGCACGGGCTCTAGGCACGCAGGCTTCAGTTGTTGTGGCAAATGGGCTCCAGTAGTTGTGGCTCGCGGGTTCTAG AGCGCAGGCTCAGTCGTTGTGGTGCACAGGCTTAGTTGCTCCGTGGCATGTGGGATCTTTGCAGACCAGGGCTTGAACCC GTGTCCCCTGCGTTGGCAGGTGGACTCTTAACCACTGCGCCACCAGGGAAGTCCCAGATGATTTGAATTTTGTGTATATT GAGAAATGATCACAATA--------AGTC-AAC--ACCCATCACCATACATAGTTCACAAAAC-TTTTTTCTTGTGATGA AAACTTTTAAGATCTGCTTTCTTAGCAACTTTCAAATATGCAATACAGCATTATTAACTGTCGTCACCATGCTGTACATT ---ATATCCCCATGACTGATGTATTTTATAACTGGACTTTCAGCCCCTTTTCAGTTGTTTATACGGACCTTTTACATGGT TAACATTAACACTATTAGTTTCAGGTATACAACATAAATGATTTGAATTTTTTTATTAGTTCACAAAACTTTTTTCTTGT GATGAAAACTTTTAAGATCTGCTTTCTTAGCAACTTTCAAATATGCAATACAGCATTATTAACTGTCGTCACCATGCTGT ACATTATATCCCCATGACTGATGTATTTTATAACTGG------------------------ACTTTCAGCCCCTTT---T CAGTGTTT-----------ATACGGACCTTTTACATGGTT-----AACATGCATTTATATTTACTAT >Equus_caballus GTAGCTGAAGACACTTTGCTGGAAAAGAAAAAAAT--GAACTTTAAAATGTTT---ACTGTTTACCTTTTTATCT---TT TTTTTACATTTTAATTTATTTGTTTTATTGAAATATAACTGACATAT-AACATTATATTCGTTTCAGATGTAGCATATA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------ATGATTTAATATTTACGTATATT AAGAAATGATCACCACAGTAAGTTTAGTC-AAC--ATCTATCCCCATGCATAGTT-ACAAAATTCTTTTTCTTGTGATGA GAAATTTTAAGATCTACTATCTTAGCAACTTTCGAATATACTGTA-AG---TATTAACTACAGTCACCACGCTGTATATT ATCACATCCCTATGACTT-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------ACTTATTTTATAATTGT------------------------ACTTTCAACTTGTTT---T CAATGCTT-----------ATAGAGACCTTTTACGTGGTT-----GACATGCATTTATATTTATTGT >Ceratotherium_simum GTAGCTCGAGCCACTTTGCTGGAAAAGAAAAAAT---GAACCTTAAAATGTTT---ACCTCTCATTTTTTTATCT---TT TTTTGACATTTTTATTTATTTATTTTATTGAGGTATAATTGACATAT-AACACTATATTAGTGTCAGATGTATAAAATA- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ---------------------------------------------------------ATGATTTGGTATTTATATATATT GAGAAATGATCACCACAGTAAGTCTAGTC-AAC--ATCTGTCACCATACACAGAT-GCAAGATTTTTTTTCTTGTGATGA GAACTTTTAAGAACTACTCTTTTACCAACTTTCAAATACACAATACAG---TATTAACTATAGTCATCATGCAGTATGTT ATTACATCCCTATGACTT-------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------ATTTATTTTATAAGTGT------------------------ACTTTCAACTTTTGT---T CAATGTTT-----------ATGCAGGCTTTTTTCATGGTT-----GACACGCATTTATATTTACTGT >Canis_familiaris GCAGCTCAAGCCACTTTGCTGGAAAA---AAAACCCTGAACTTTAAAATACTT---ACTTTGCAGCCT---TTGT----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------T CATT---------------ATACAGGCATCTTACATGATT-----GACCTGCATTTATATTTACTGT >Felis_catus GTGGCTCAA--------GTTGGAAAAGAAAAAAAA--AAACTTTAAAATACTT---ACTTTACAGCT----TTGT----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------T CATTGTTT-----------ATACAGGCATTTTACATGGTT-----GACCCGCATTTATATTTACTCT >Manis_javanica GTGTCTCAAGCTACT--GCTGGGAAAGATAAAAAT--GAACTTTAAAATATTT---CCCTTTCAGCCT-TTTTTT----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------C AGTTGTTT-----------ATACAGACATTATACA--ATT-----AACAGGTATTTATATTCACTGT >Myotis_myotis GTGGCTCAAGCCACTTTGCTGGAAAAGAGAAAAAT--GAACTTTAAAATGTTT---ACCGTTCAGCC----TTTT----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------T CAATATTT-----------ATGCAGACACTGTAAATGGTT-----GACATATACTTGTATTTTCTGT >Rousettus_aegyptiacus GTAGCTCAAACCACTTTGCTGGAAAAGAGAAAAAT--GAACTTTGAAGTGTTT---ACTTCTCAGCCT-TTTTTT----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------T TAGTATTT-----------ATACAGGCATTTTACATGGTT-----CATATGCATTTATATTTACATT >Condylura_cristata GTGATTTAAACCATTTTATTGGAAAAGAAAAAAAC-------TTAAAATGTGT---GCCTTTCAAGTT---TTTT----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------T CCATGTTTATACAATGTTTATATAGACATTTTATATGGTTGTATAGGTATGCATTT---TTTATTGC >Uropsilus_gracilis GTGGTTTAAGTCATTTTGTTGCAAAAGAAAAAAAC------TTTAAAATGTGT---GCCTTTCAGTGA-TTTTTT----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------T CAGTGTTT-----------ATGCAGATAGTTTACATGATT-----TTTATGTATTTG-ATTTACTCT >Homo_sapiens GTAGCTCAAGCCACT-TGCTGGAAAAGAAAAAAAAAGGAACTTTAAATTGTTT---ATCTTTTAAACT---TTTT----- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------T CAGTGCTC-----------ACACAGACACTTTACATGGTT-----GGCATGCATTTATACTTA-TGT Pig434_LINE >L1MA9_3END -------------------------------------------------------------------------------- -----ATGGGGAGATGTTGGTCAAAGGGTACAAAGTTTCAGTTATGCAGGATGAATAAGTTCTGGAGATCTAATGTACAG CATGGTGACTATAGTTAATAATACTGTATTGTATACTTGAAATTTGCTAAGAGAGTAGATC-TTAAGTGTTCTCACCACA CACAAAAAAA-----------------TGGTAACTATGTGAGGTGATGGATATGTTAATTAGCTTGATTGTGGTAATCAT TTCACAATGTATACGTATATCAAAACATCACGTTGTACACCTTAAATATATACAATTTTTATTTGTCAATTATACCTCAA TAAAGCTGGAAAAA------------------------------------------------------------------ ---------------------------------------------------------- >Sus_scrofa CCA-TTTCCCC-CTGGGAATGGGGGAATTAGTAAGTGGGGA-TTCCTTACTCCTTTGTTGGATTT---GAAATTCCAGAC TT--------------GGGGTCGAAAAGTACCAACTTCTA--------------ATAAATACTAGGGAGGTAATATACCA TATGATG---------------GTGGTGTGGTATATTTGAAAGTCGGTAAGAGAGTAGATT-CTAAAAGTTCTTATGACA AGGAAGAACACATTTTTCTTCTTCTTTTTGTATCTATACAGACTGATGG--ATGTTAACT-AACTTATTGTGGTAATCAT TTCACAATATAT--GTAAGTCAAGCCATTATGCTGCACTCCTTAAACTTATACAG-TGCTGTATGTTAATTATA--TCAA TAAAACTGAAAAAC--AAAAATAAAAAATAAGAACAAAATAAAACACAAAA---GAAATTATTGACTT---TATTGTCTG GG-TCTAGTCCTTCCTGGACTCCATGAGCCCACAATTTAGGCTTGTCCTTACTATGCT >Bos_taurus CAG-TTTCCCCATTGGGAATGG--------GGGTGTGGTGGAGTCCTTACTCCTGGGTTGGATTT---GAAATTCCAGAC TT--------------GTGGTCAAAAGGTACCAACTTACAGTTGT--AAA----ATAAGTACCAGCGAGGTAACATACAA TGTCATGACTGCAGTTAACATTGCCGTGTGATATATTTGAAAGTTAGTAAGAGATTAGGTC-TTAAAATTTCTCATGACA GAGCAAAACACATTT------CTTTTTTTGTATCTATATAAGCTGATGA--ATGTTAACTAAATTTATTGTGGGAATCAT TTCACAAT-TAT--GTAGGTCAAGACATTATGCTGTACACCTTGAATTTGTACAG-TGCTGTATGTTAATTATATCTCAT TAAAACTGAAAAAATGAAAAATTAAAACATAGAACAAAACAAAGCAAAAAA---GCAATCCCACACTT---TACTGTCTG GG-TTGGGTCCTTCCT----------------TACTTACTGCTTGCTTCCTTACTGCT >Myotis_myotis CAG-CTTCCCCACTGGGAATAGGGGGG---GGGATTGGTGG-TTCCTTATTCCTTGGTTGGAGTT---GAAATTTCAGAC -T--------------GTGGTCAAAAGGTACAAACTTCCAGTTAT--AAGACACATAAGAACTAGGGATGCGATGTACAA TATGATGACTATAGTTAATACTGCTAAATGGTTTCTTTGAAAGTTGTTAAGAGAGTTGATC-CTAGAAGTTCTCATCACA AGGAA----ATGTTT---TTTTCTTTTTTGTATCTCTATGA---TGTGG--ATGTTAAGTCAACTTACTGTGGTAATCAT TTCACAATTTAT--GTAAGGCAAGCCATTATGCCGCACACTTCAAACTCATACAA-TGCTATATGTCAATGATACCTCAA TAAAACTGAAAAAT----AAATTAAAGTGAAAACAACAACAAA----AAAA---TAAATTTCATAGTT---TACTGTCTG GA-TCATGTCCT---------CTATGGGCCCACGTGTTAAGCTTGCACTT--ACTGTG >Rousettus_aegyptiacus CGG-TTTCTCCACTGGGAATGG--------AGGTGTGATAA-TTCCTTATTCCTTGATTGGAGTT---GAAAGATAAGGC TT--------------CGGGTCAAAAGGTACAAACTTCCAGTTGT--AAGATAAATAAGTCCTTGGGATGTAATATACAA CATGGTGGCTATAGTTAACACTGCTGTGTGCTATCTTTGAAAACTGCTAAGAGAATAGACCTCTAAAAATTCTCATCACA AGAAAAATAAC----------TTTTTTTGGTATCTATTTGAGATGATGC--ATGTTAAGTAAAGTTATTGTGGTAATCAC TTTATAATATTT--GTAAGTCAAGCAATTATGCCATACACATTAAACTTATATAG-TGCTGTATGTCAATTATACATCAA TAAAACTGGAAAAG----AATATAATGAAAAAATGAAAACAAAACAAAAAA---GAAATTTCAGACTT---TACTGTCTG GG-TCAGGTCCTTCCTGGTTTCTATGGGCCCACATGTTAAGATTGCACTT--ACTGCT >Canis_familiaris CCG-TTCCCCTACTGTGAATGGTGGAGG--GAGGGGGGTGG-GTCCTTATTCCTTGGTTGGAGTT--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------GAAATCCCAGACTT---TACTGTCCG GA-TCAGGTCCTTCCTGGTCTTCCAGGGCCCACACTT---------------ACAGCT >Felis_catus CTG-TTCCCCTACTGTGGGTGGGGGGAGA-GGATGCGGCGG-TTCCTTATTCCTTGGCTGGAGTT--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------GAAATTCCAGACTT---TACTGCCTG GG-TCAGGTCCTTCCTGGTCTCTAAGGGCCCACACTTAA-------------ACAGCC >Manis_javanica CAG-TTTCCCCACTATGAATGGG-------GTGTGTGGTGG-CTCCTATTTCCTTGGTTGGACTT--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------GAAATTCCAAACTT---CACTGTCTG GG-TCAAGTCCTTCTTGGTCTCTATGGGCCCACACGTCAAGCTCACCCTTA-ACTGCT >Equus_caballus CAGTTTTCCCCACTGTGAACGGGGT-----GGGCGGGGTGG-TTCCTCATTCCTTGGTTGGAATT--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------GAAATTCCAGACTT---TACTGTCTG GG-TCAGTTCCTACCTGGTCACTATGGGCCCACACGTTAAGCTCACGCTT--ACTGCT >Ceratotherium_simum CAG-TTTCTCCACTGTGAATGG--------GAGAGTGGTGG-TTCCTTATTACTTGGTTGGAGTT--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------GAAATTCCAGACTT---TACTGTCTG GG-TCAGGTCCTTCCTGGTCACTATGGGCCTACACATTAAGCTCACACTT---CGGCT >Condylura_cristata CAG-CGGTGCCATTTGGAATGGG-------GGGCACAGTGG-TTCCTTATTTGTGGGTGGGAGTT--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------AAATTTCACACTT---TACTATCTG AG-TCAGGTCCTTCCTGTCCCCTGTGGGCCCACACATTAAGCGAGCATGC--TGTGCC >Erinaceus_europaeus CTG-TTCACCACCAGAGAGGGGGTGGGGGTGCGCATGGCGG-TTCCTTATTCCTCAGTTGGAACT--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------GAAATTCTAGCCTT---TACTGTCTG GATTTGGGGTCTTCCGGGTCTTGAAGGACCCACA-TTTGAGCTTACACTT--ACTGCT >Homo_sapiens CAG-TTTTC---CTGTGAATAG--------GTGTGCAGTGG-TTCCTTATTCC----TTGGAGTT--------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------------------------------------GAAATTCCAGACTT---CGCTATTTG TG-TCAGGTCCT----GGGTGCTATGGGCCAATGCGTTAAGCTCCCACTT--ATTGCT Pig450_LINE >L1MA9_3END -------------------------------------------------------------------------------- ----------------TTTTTCCAGCTTTATTGAGGTATAATTGACAAATAAAAATTGTATATATTTAAGGTGTACAACG TGATGTTTTGATATACGTATACATTGTGAAATGATTACCA---CAATCAAGCTAAT--TAACATATCCATCACCTCACAT AGTTACC--ATTTTTTTGT--GTGTGGTGAGAACACTTAAGATCTACTCTCTTAGCAAATTTCAAGTATACAATACAGTA TT--ATTAACTATAGTCACCATGCTGTACATTAGATCTCCAGAACTTATTCAT--------------------------- -------------------------------------------------------------------------------- ------------------------------------------- >Sus_scrofa TATAAATTAA-TTTATAGCTTGCTTT----------------TGATATTGA----TCCCAGT-GAAGAACGT------AT CT-----TTCA-------CTATTTTTAAAATTGAGGTGAAATTGCCG---TAACATGTTAGT--TTTCAGTTATACAATG TAATGATTTCACATTTCTATGTGTTGCAAAGTGATTACCA---CAGTAAGTCCAGT--CAAC--ATTTGTAACCATTCAT AGTTACCTTTTTTTTTTTTTCTGACAATGAGCACTTTGAAGGTTCGCTCTCTTAGCTATTTTCAAATGTGCAATACAGTA TT--AAAAAATATTGGTAACATACTGTGCAGTAGATAGCAGTGCCTTAACCATGTGCGTGTTGTCAGGCCTGAGTGCCTC TTCCATTCATGTCAAGGAGAGT-CTGACTTT--TTCCTTTTATACA--ACAAC---AAAACACCTTT---CATTCATCTA AGATGTTTTGT--TTCTTAGTGTCA-TTTAATATTTTCTTCAT >Vicugna_pacos TATAAATTAA-TTTATAGATTGATTT----------------TGCTATT---TCATCCTAGC-AAAGAATAC---AAGAT AC-----CTTT-------CATTTGTTTAAACTAAGGTGTTTATGACA---TAACA-----TTAATTTCAGGTATGCAATG TAATGATTTGATATTTGTAGACATTGCAAAATGATTACCA---CAGTAAGTCTGGT--TAAC--ATCCATACTCATACAT ATTTACA--GTTTTTTTCCTTTGGTGGTGAGAACTTTGAAGATCCATTCTCTTAGCTATTTTCAAATACGCAATACGGTA TT--AAAAAGTGATGGTTAGATACCATGAAGTAGATAGCAGTACCTTAACTGCATGCATGTTGTCAGGCCTGAAGGCCTG TTGCATTCCTGCTAAGGAGAGTGCTAACCTT--CTCTTTTCTGATAATACAAG---AAGATGCATTT---CATTCATTCA AGATATTTTATGATTCTTAGTGTCATTTTAATGTTTTCTTCCT >Equus_caballus TATAAGTTAA-TTTATAGATTGATTT----------------TGATATTTGGTCCTTCTAGT-GAAGAACAC---AAGAT AC-----CTTT-------T-ATTTTTTTTATTGAGGTATAATTGGCA---TAATATTGTATTGGTTTCAAGTGTACGAAG TAATGATTCAATATTTTTGTATATT-CAAAATGATCACCA---CAGTAAG-CCAGT--TAAC--ATCCAGCACCATGCAT AGTTGCA--ATTATTTTTTTCTTGTGCTGAGAACTTTCAAGACCCACTCTCCTAGCTATTTTCAACTGTGCAATACAGTA TT--AAAAAACGATGATTAGATGCCACAAAATCGGTGGCAATGCCTTAACCATATGCTTATCGTCAGGCCCAAGCGCCTC TTCCATACTTGTCAAGG-GAGTGCTAACCTTCGCTCTTTTCATGCACTAT------TAGATACCTGT---CATTCATTCA AGGTATTTTATGCTTCTCAGTGACATTTTAATGTTTTCTTCAT >Ceratotherium_simum TATAAGTTAA-TTTATAGATTGATTT----------------TGATATTTGGTTCTTCTAGT-GAAGAACAC---CAGAT AC-----CTTT-----------TTTTTTTATTGAGGTGTAATTGACA---TAACA-----TTAATTTCAGGTGTACAGCG TAATGATGGGATATTTGTATATGTTCAAAAATGATCACCA---CAATAAG-CCAGT--TAAC--ATCTGTCACCATGCAT AGTTACA--GTTTTTTTTCTCTTGTGATGAGAACTTTCAAGGTCCACTCTCCCGGCAATTTTCAAATATGCAATGCAGTA TT--AAAAGATGATGCTTAGATGCCACAAAGTAGGTGGCAAGGCTTTACCCATATGCTTGTTGTCAGGCCCAAGGGCCTC TTCCATCCTTGTCAGGGAGAATGCTAACCTCCTCTCTTTTCATACACTAC------TAGATACTTTT---CATTCATTCA AGATATTTTATGCTTCTCAGTGACATTTTAATGTTTTCTTCAT >Myotis_myotis TATAAATGAA-TTTATAGATTGCTGT----------------TGATATTTGGTCCTACTAGC-AAAGAACAC---AAGAT TC-----TTTT------------TTTTAAATTGAGGTGTAATTGACA---TAACATAACATT-ATTTCAAGTGCACAGTG TAATGATTTCATATTTGAATATATAGGAAAATGATCATCACTGCAATAAATTCAGT--TAAC--ATCCATCACTAT--AT AGTTACA--GTTTTTTT----GTGTGATGAAAACTTTCAAGATCCACTCTCCTAACTATTTTCAAATACGCAATACAATA TT--AAAAAACAAAGGTTAGCTGCTGTGAAGTAGGTGGCAATGCCTTAATCCTATGCATGTTGTCATGCCCGAGCACCTT TTCCATCCTTGTCATGGGGAGGGCTAACCT---CTCCTTTCATACAACACTAT---AAGATACCTTT---CATTCATTCA AGGTATTTTATGCTTCTCAGTGGTACTTTAATGTTTCCTTCAT >Rousettus_aegyptiacus TATAAATCAA-CTTATAGATTGATGT----------------TGATATTTGGTTCTACTAGA-GAAAAACAC---AAGAT AT-----CTTT---CCTTTTTTTAAAAAAATTGAGGTATAATTGACA---TAACATTACATTAGTTTTAGGTATACAATT TAACGATTTGATATTTATATATATAGCAAAATGAACATCA---CAATAAGTCCAGTTATAAC--ATGCATCACCATACAT AGTTACT--TTTTTTTTTTT-------TGAGAACTTTCAAGATCCACTTGCCTAGTTATTTTTACATTTGCATTACAGTA TTTAAGAAAATACTAGGTAGATGCCACAAAGTAGGTGGCAATGCTTTAACCATATGTTTGTTATCAGGCCCTAAGGCCTC T--------TGTCAGGGGGAAGTCAAATCTTCTCTCCTTTCATTCAGTACTGC---AGGACATCTTT---AATTCATTTA AGATATTTTATGCTTCTCAGTGGCATTTTAATATTTTCTTTAT >Canis_familiaris TATAAATTAATTTTACAAGTTGATTT----------------TGGTATTTGATTCTTCTAGC-AGAGAACAC---AAGAC AC-----CT-T--------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------CATCCA---- -------------------GTGGCATTTTAAGGTTTTCTCCAT >Felis_catus TATAAGCTAA-TTTATAAGTTGATTT----------------TGGTATTTGGTTCTTCTAGC-AAAGAACAC---AAGAC AT-----CCTT--------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------AATTCA---- AAATATTTTGTGCCTCTTGGTGGCATTTTAAAGTTTTCTCCAT >Manis_javanica TATAAATTGA-ATTATAGATTGATT-----------------TGATGTTTGGTCTTTCTTGC-AAAGAACAC---AAGAT AT-----CTCT--------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------TGGTGGCATTTCAGTGTTTTCTTCAT >Condylura_cristata TAAAAATAA--TGTATAGAATGAATT----------------TGATGTGTGGTTTTTCT----AATGA-TA----AATAC AC-----CCAT--------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------CATTCATTCC AAATATTTTCTGCACCTCACTAGTATTTTAATGTTTTCCTAGC >Uropsilus_gracilis TATAAAACAA-TGTATA-ATTGAATT----------------TGAGGTGTGATCTTTCG----AGAGA-TA----AAGAT CG-----CTTT--------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------TATTC----- ----------------TGAGT---ATTTTAATATTTTCTTCAT >Homo_sapiens TATAAATTGT-TTTATAGATTGATTTAGGATAAACCTTTTTATGTTATTTGGTCCTTCTAGCTAAAGAACAC---AAGAT ACCTTTTCTTT--------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ----------------------------------------------------------------------CATTCATTCA AGATATTTTATGCCTCTTGGTTGCATTTTAATGCATACTTCAT Pig451_LINE >L1MB2 ------------------------------------------------------------------------------AT GAACCTTGAGGACATTATGCTAAGTGAAATAAGCCAGTCAC--AAAAAGACAAATACTGTATGATTCCACTTATATGAGG TACCTAGAGTAGTCAAATTCATAGAGACAGAAAGTAGAATGGTGGTTGCCAGGGGCTGGG---GGGAGGGGGAAATGGGG AGTTGTTGTTT--------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------AATGGGTATAGAGTTT--CAGTTTTGCAAGATGAAAAAGTTCTGG-AGATCGGTTG CAC-AACAATGTGAATATACTTAACAC----TACTGAACTGTACACTTAAAAATGGTTAAGATGGTAAATTTTATGTTAT GTGTWTTTTACCACAA----TTAAAAAAA--------------------------------------------------- -------------------------------------------------------------------------------- --------------------------- >Sus_scrofa ATCACCAAGGTATCTTCTCTGAA--TAGATACACT--TCTCCAAAGGGTTTAGA---TGAGGCAAGTAAAACTTG----- --------AAGATACTAGGCTAAGTGAAATAAGCTAGTTGC-AAAAAAGACAACTACCGTGTGGTTTTGCTTGTATGAGA TACCAATAGTAGTCAAACTCATGGAAATAAA----------TTATGTGCCCAGGGCTAGGGGAGCAAGGGTGGAAGGAGC AGGTTTTTTTTTTTCGCTATTTCTTGGGCCGCTCCCGCGGCATATGGAGGCTCCCAGGCTAGGGGTCGAATCGGAGCTGT AGCCACCGGCCTACGCCAGAGCCACAGCAACGCGGGATCCGAGCCGCGTCTGCAACCTACACCACAGCTCACGGCAACGC CAGATCGTTAACCCACCGAGCAAGCGCAGGGACCGAACCCGCAACCTCATGGTTCCTAGTCGGATTCGTTAACCACTGCA CCACGACGGGAACTCCCATGGAGCAGTTGTTTTTTAATTTCCCCGTTCTGTAAGATGAAAAAGTTCTGGAAGGTCTGCTT CAC-AGCAATGTGAATACACTTGGCTG----TACTGAAAGGAATACTTAAAA----------------TTTTTATGTTAT ATGAATTTTATCACAA----TTCAAATGAA--------------------------------ACAAGCAAGTAAACTG-- -CTGT---AATCCCAGGCAGTCTTCCCAAGAACGGATACTCTCCCACCATTTGCAGTATGTCATTTTTGTCTTCCTTTCA GTCTCTAGGAAGGAA-ACCTCTCTCAC >Tursiops_truncatus ATCACCAAGGTAGCTTCTCTGAT--TAGTTACACT--TCTCCCAAGGGTTTAGA---ACAGGCAAGTAAACCTTG----- --------AAGATACTATGCTGAATGAAATAAGCTAGTCACAAAAAAAGAGAACTACTGTATGGTTTTGCTTATATGAGG GACCAATAGTAGTCAAACTCATGGAAACAAA----------GTGTGTGCCCAGGGCTAGAAG-GCAAGGGAGAAAGGAGC AGTTGTTGTTT--------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------AATGGTTATATAGTTTCCCCATTCCCCGAGATGAAAAAGTTCTGG-AGATCTGCTT CACAAACAGTGTGAATATACATAACTG----TACTGAAAGGTACACTTAAAA----------------TTTTTATGTTAT ATACATTTTATCACAA----TTAGAACAAA--------------------------------ACAAGC-AGTAAATTG-- -CTGT---AATTCCAAGCAGTATTCCCAAGAACGGACACTTTCCTATCATT--------------TTCGTCTTCCTTTCA ATCTCTAGGAAGTAA-GCCTCTCTCAC >Equus_caballus ATTGTCAAGGTATCTTCTCCACT--TAATTATACT--TCTCCCAAGGGTTTAGA---AAAAGCAAGTAAACCTTG----- --------AACACATTATGCTGAGTGAAATAAATTAATCAC--AAAGAAGCAAATACTGTATGATTTCACTTATATACGG TATCAAGAGTAGCCAAACTCATGGAAACAAA----------GCAGTTCCCAGGGGCTGGG---GTTAGGGCAAAATGGAA AGTTGTTGTTT--------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------AATAAGCATACAGTTT--CAGTTTTGCAAGACAAAAAAGTTCTGG-AGATCTGTTT CTC-AACAATGCGAATATACTTAATAC----TGGTGAAATGGACATTTAAAAATGGTTAAAGTGGCAAACTTTATGTTAT GCATATTTTATCACAA----TTTAAAACAAAAAGCAAAACAACAACA---------------AAAGGCAAGTAAATTGCT GCTGT---AATCC-AGGTAGCATTCTCCAAAACTGGTACTTTCCTACCATTAGCAGTGTCTCATTTTTGTCTTCCCTTTA ATCTCTAGGAAGTAA-GCTCCTCTCAC >Ceratotherium_simum ATTGCCAAGGTATCTTTTCCGAT--TAATTACACT--TCTCCCGAGGGTTTAGA---AAAGACAAGTAAACTCTG----- --------AAGATATCACGCTAAGTGAAATAAACTAGTCAC--AAAAAAACAAATACTGTGTGATTTCACTTATATAAGG TATCAAGATTAGTCAAACTCATGGAAAAAAT----------GCAGTTGCCAGGGGCTGGG---TTTAGGGCCAAATGA-- AGTCG--------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -----------------------------------AGTTT--CAGTTTTGCAAGATGAAAAAGTTCTGG-AGACCTGTTT CTC-AACAATGTGAATATACTTAATAC----TACTGAACTATACACTTAAAAATGGTTAAAATGGCAAATTT--TTTTAT GTATACTTTATCACAA----TTTAAAAAAACAAAAAGCAAAACAACAACAACAACAACA---AAAGGCAAGTAAATTGCT GCTAT---AATCCCAGGCAGCATCCCCCAAAA------CTTTCCTGCCATTTGCAATGTCTCATTTTTGTCTTCCCTTTA AACTCTGGGAAGTAA-ACTCCTCTCAC >Myotis_myotis ATTGTGAAGGTATCTTCTCTGAT--TAGTTATACC--TCTCCTAAAGGTTTAGA---AAAGGCCAGTAAACCTTG----- --------GAGACATGATGCTAAGTAAAATAAATTAGTCAC-AAAAAAGACAAATACTATATGATTTCACCTATATGGGA TATCAAGAGTAGTCAAGCTTATGGAAACAA-----------GTGATTGGCAGGGGCTCAG---GTAAGAGTAAAATGGGG AGTTGTT------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------AATGAGCAT--AGTTT--CAGTTTTGTAAGAT--AAAAGTTCTGG-ATGTCTGTTT CAC-AACGATGTGAGTATACTTAATGCTACTTACTAAACAGTACACTCCAAG-CGATTAAGATGGTAAATTT------AT GTCCATTTTATTATAA----TTTTAAAAAGGAAAGAA-------------------------AAAGGCAAATAAATTAC- -TTGT---AATTCCAGGCAGCATTTCCCAAAACTGCTACTTTTCTACCATTTGTAGCACCTCATTTTTGGTTTCCCTTTA ATCTGTTGGAAGTAA-ATGGCTCTCAC >Rhinolophus_ferrumequinum ATTGCCAAAGTATCTTCTCTGAT--TAGTTCTAGT--TTTCCCAAAGGTTTAGA---GAAGGCAAGTAAAACTTG----- --------AAGACACTATGCTAAGTGAAATAAACGAGTCAC--AGAAAGACAAATACTGTATCATGTAGCTTATATGAAG TATCAAGAGTCTTCAAAGTCACGGAAACA------------GTCATTGCCAGGGGCTGGG---CTGAGGGCAAA-TGAGG AATTGTTGTTC--------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- ------------------------AATGAGTATAGAGTTT--CACTTTTGCAAGATGAGAAAGTTCTGG-AGAT-TATTT CAC-AACGAAGTG-----------------------AACTATACACTTAAAAATGGTTAAGATAGTAAATTG--TGTCAT GTATATTTTATCACGAATGTTTAAAAAAAGGCAAAATAACAACAACAACAACAA--------AAAGGCAAGTAAATTG-- -TGAT---CATCTCAGGCAGCATTCTCCCAAACTGCTACTTTCCTACGGTTCCCAGTGTCTGGTTTTTGTCTTCCCTTTA ATTTCTGGGAAGTAA-AGCTCTCTCCC >Canis_familiaris ATTGCCAAGGTTTCTTCTTTGAT--CAGTTATAAT--TCTTCCAAGAGTTTAGA-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------AAAAGCAAATAGATTG-- -CTGT---CATCCCAGACAGCATTCCCAAGAACTGATACT-TCCTATCATTTGCAACATCCCATTTTAGTCTTCCCTCTA ACCTTGAAGAAGTGA-ACTCCTCTCAT >Felis_catus ATTTCCAGGGTTTCTTCCCTGAT--TAGTTATATT--TCTTCCAAG-GTTTAGA-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------AAAGGCAAGTAGATTG-- -CTGT---AATCCCAGGCAGCATTCCAAAAACCTGATACTTTCCTATCATTTTCAGTATTCTGTTTTTGTCTTCCCTTTA ATCTTGAAGAAGCAA-ACTCTTCTCAT >Manis_javanica ATTGCCAAAGTTTCCTCTCTGAT--TAGTTGTATTTATTTTCCAAG-----AGA-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------AGAGACAAGTAAATTG-- -CTGT---GATCCTAGGCAGCCATTCCAAGAACTGGGACTTTTCCACCATATGCAGCATCCCATTTTTGTCTTCCCTTTA ATCTTTAAGAAGTAA-ACTCTTCTCAC >Condylura_cristata ATGGCCAAGATAGCTTCTCTGAA--CAGTTGCCCT--TCTTTCAAGGGTAAAGA-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------AAACACAAGT----TG-- -CTGT---AAATCCAGGCCACATTTCTAAGAA-TGATACTTTCCT-------GCAGCAT---------------CCCTTA ATTTCTAGGCGGTGA-CATCTTTTCAC >Solenodon_paradoxus ATTGCCAAGTTATCTT---TGAT--TAGTTAGGCT--TCTTCCAAGGGTTCAGA-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------AAAGGTAAGAAAATTG-- -CTGT---AATCCCAGGGAGCATTCCCAAGAACTGGTACT---------------------------------------- ----------AGTAG-ATGTTTTTCAC >Homo_sapiens ATTGCCAAGCTATCTTCTCTGATTATAGTTATATC--TCTTCCAAGGACTTAGA-------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- -------------------------------------------------------------------------------- --------------------------------------------------------------AAGGGTAAGTACATTG-- -CCAT---AATCCTAGGCAGTATTTCCAAGAACTAGAACTTCCCTACCATTTGCAGGGCCCTGCGTTTTTCCTCTCTTCA GTCTCTAGGAACTAAGGCTCCTCTCAC