Researcher Portfolio

Habermann, Bianca

Habermann, Bianca / Computational Biology, Max Planck Institute of Biochemistry, Max Planck Society, Max Planck Institute of Molecular Cell Biology and Genetics, Max Planck Society

Researcher Profile

Position: Habermann, Bianca / Computational Biology, Max Planck Institute of Biochemistry, Max Planck Society

Position: Max Planck Institute of Molecular Cell Biology and Genetics, Max Planck Society

Researcher ID: https://pure.mpg.de/cone/persons/resource/persons101406

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Publications

(1 - 25 of 83)

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: Zhang, X., Avellaneda, J., Spletter, M. L., Lemke, S. B., Mangeol, P., Habermann, B., & Schnorrer, F. (2024). Mechanoresponsive regulation of myogenesis by the force-sensing transcriptional regulator Tono. Current Biology, 34(18), 4143-4159.e6. doi:10.1016/j.cub.2024.07.079. [PubMan] : Meiler, A., Marchiano, F., Haering, M., Weitkunat, M., Schnorrer, F., & Habermann, B. H. (2021). AnnoMiner is a new web-tool to integrate epigenetics, transcription factor occupancy and transcriptomics data to predict transcriptional regulators. Scientific Reports, 11(1): 15463. doi:10.1038/s41598-021-94805-1. [PubMan] : Pfeiffer, F., Losensky, G., Marchfelder, A., Habermann, B., & Dyall-Smith, M. (2020). Whole-genome comparison between the type strain of Halobacterium salinarum (DSM 3754(T)) and the laboratory strains R1 and NRC-1. MICROBIOLOGYOPEN, 9(2): e974. doi:10.1002/mbo3.974. [PubMan] : Yim, A., Koti, P., Bonnard, A., Marchiano, F., Dürrbaum, M., Garcia-Perez, C., Villaveces, J., Gamal, S., Cardone, G., Perocchi, F., Storchova, Z., & Habermann, B. H. (2020). mitoXplorer, a visual data mining platform to systematically analyze and visualize mitochondrial expression dynamics and mutations. Nucleic Acids Research (London), 48(2), 605-632. doi:10.1093/nar/gkz1128. [PubMan] : Rolland, S. G., Schneid, S., Schwarz, M., Rackles, E., Fischer, C., Haeussler, S., Regmi, S. G., Yeroslaviz, A., Habermann, B., Mokranjac, D., Lambie, E., & Conradt, B. (2019). Compromised Mitochondrial Protein Import Acts as a Signal for UPRmt. Cell Reports, 28(7), 1659-1669.e5. doi:10.1016/j.celrep.2019.07.049. [PubMan] : Hoepfler, M., Kern, M., Straub, T., Prytuliak, R., Habermann, B. H., Pfander, B., & Jentsch, S. (2019). Slx5/Slx8-dependent ubiquitin hotspots on chromatin contribute to stress tolerance. EMBO Journal, 38(11): e100368. doi:10.15252/embj.2018100368. [PubMan] : Pfeiffer, F., Marchfelder, A., Habermann, B., & Dyall-Smith, M. (2019). The Genome Sequence of the Halobacterium salinarum Type Strain Is Closely Related to That of Laboratory Strains NRC-1 and R1. Microbiology Resource Announcements, 8(28): e00429-19. doi:10.1128/MRA.00429-19. [PubMan] : Dürrbaum, M., Kruse, C., Nieken, K. J., Habermann, B., & Storchova, Z. (2018). The deregulated microRNAome contributes to the cellular response to aneuploidy. BMC Genomics, 19: 197. doi:10.1186/s12864-018-4556-6. [PubMan] : Nowoshilow, S., Schloissnig, S., Fei, J., Dahl, A., Pang, A. W. C., Pippel, M., Winkler, S., Hastie, A. R., Young, G., Roscito, J., Falcon, F., Knapp, D., Powell, S., Cruz, A., Cao, H., Habermann, B., Hiller, M., Tanaka, E. M., & Myers, E. W. (2018). The axolotl genome and the evolution of key tissue formation regulators. Nature, 554(7690), 50-55. doi:10.1038/nature25458. [PubMan] : Prytuliak, R., Pfeiffer, F., & Habermann, B. H. (2018). SLALOM, a flexible method for the identification and statistical analysis of overlapping continuous sequence elements in sequence- and time-series data. BMC Bioinformatics, 19: 24. doi:10.1186/s12859-018-2020-x. [PubMan] : Pfeiffer, F., Zamora-Lagos, M.-A., Blettinger, M., Yeroslaviz, A., Dahl, A., Gruber, S., & Habermann, B. H. (2018). The complete and fully assembled genome sequence of Aeromonas salmonicida subsp. pectinolytica and its comparative analysis with other Aeromonas species: investigation of the mobilome in environmental and pathogenic strains. BMC Genomics, 19: 20. doi:10.1186/s12864-017-4301-6. [PubMan] : Spletter, M. L., Barz, C., Yeroslaviz, A., Zhang, X., Lemke, S. B., Bonnard, A., Brunner, E., Cardone, G., Basler, K., Habermann, B. H., & Schnorrer, F. (2018). A transcriptomics resource reveals a transcriptional transition during ordered sarcomere morphogenesis in flight muscle. eLife, 7: e34058. doi:10.7554/eLife.34058. [PubMan] : Ramirez, F., Bhardwaj, V., Arrigoni, L., Lam, K. C., Gruening, B. A., Villaveces, J., Habermann, B., Akhtar, A., & Manke, T. (2018). High-resolution TADs reveal DNA sequences underlying genome organization in flies. Nature Communications, 9: 189. doi:10.1038/s41467-017-02525-w. [PubMan] : Donohoe, C. D., Csordas, G., Correia, A., Jindra, M., Klein, C., Habermann, B., & Uhlirova, M. (2018). Atf3 links loss of epithelial polarity to defects in cell differentiation and cytoarchitecture. PLoS Genetics, 14(3): e1007241. doi:10.1371/journal.pgen.1007241. [PubMan] : Zamora-Lagos, M.-A., Eckstein, S., Langer, A., Gazanis, A., Pfeiffer, F., Habermann, B., & Heermann, R. (2018). Phenotypic and genomic comparison of Photorhabdus luminescens subsp laumondii TT01 and a widely used rifampicin-resistant Photorhabdus luminescens laboratory strain. BMC Genomics, 19: 854. doi:10.1186/s12864-018-5121-z. [PubMan] : Schmähling, S., Meiler, A., Lee, Y., Mohammed, A., Finkl, K., Tauscher, K., Israel, L., Wirth, M., Philippou-Massier, J., Blum, H., Habermann, B., Imhof, A., Song, J.-J., & Müller, J. (2018). Regulation and function of H3K36 di-methylation by the trithorax-group protein complex AMC. Development, 145(7): UNSP dev163808. doi:10.1242/dev.163808. [PubMan] : Krempel, R., Kulkarni, P., Yim, A., Lang, U., Habermann, B., & Frommolt, P. (2018). Integrative analysis and machine learning on cancer genomics data using the Cancer Systems Biology Database (CancerSysDB). BMC Bioinformatics, 19: 156. doi:10.1186/s12859-018-2157-7. [PubMan] : Pfeiffer, F., Bagyan, I., Alfaro-Espinoza, G., Zamora-Lagos, M.-A., Habermann, B., Marin-Sanguino, A., Oesterhelt, D., & Kunte, H. J. (2017). Revision and reannotation of the Halomonas elongata DSM 2581(T) genome. MicrobiologyOpen, e465. doi:10.1002/mbo3.465. [PubMan] : Papanikos, F., Daniel, K., Goercharn-Ramlal, A., Fei, J.-F., Kurth, T., Wojtasz, L., Dereli, I., Fu, J., Penninger, J., Habermann, B., Surani, A., Stewart, A. F., & Toth, A. (2017). The enigmatic meiotic dense body and its newly discovered component, SCML1, are dispensable for fertility and gametogenesis in mice. Chromosoma: Biology of the Nucleus, 126(3), 399-415. doi:10.1007/s00412-016-0598-1. [PubMan] : Sun, S., & Habermann, B. H. (2017). A Guide to Computational Methods for Predicting Mitochondrial Localization. In D. Mokranjac, & F. Perocchi (Eds.), Mitochondria (pp. 1-14). New York, NY: Humana Press. [PubMan] : Prytuliak, R., Volkmer, M., Meier, M., & Habermann, B. H. (2017). HH-MOTiF: de novo detection of short linear motifs in proteins by Hidden Markov Model comparisons. Nucleic Acids Research (London), 45(W1), W470-W477. doi:10.1093/nar/gkx341. [PubMan] : Nakel, K., Bonneau, F., Basquin, C., Habermann, B., Eckmann, C. R., & Conti, E. (2016). Structural basis for the antagonistic roles of RNP-8 and GLD-3 in GLD-2 poly(A)-polymerase activity. RNA, 22(8), 1139-1145. doi:10.1261/rna.056598.116. [PubMan] : Kowalinski, E., Kögel, A., Ebert, J., Reichelt, P., Stegmann, E., Habermann, B., & Conti, E. (2016). Structure of a Cytoplasmic 11-Subunit RNA Exosome Complex. Molecular Cell, 63(1), 125-134. doi:10.1016/j.molcel.2016.05.028. [PubMan] : Le, H. Q., Ghatak, S., Yeung, C.-Y.-C., Tellkamp, F., Guenschmann, C., Dieterich, C., Yeroslaviz, A., Habermann, B., Pombo, A., Niessen, C. M., & Wickstroem, S. A. (2016). Mechanical regulation of transcription controls Polycomb-mediated gene silencing during lineage commitment. Nature Cell Biology, 18(8), 864-875. doi:10.1038/ncb3387. [PubMan] : Roth, S., Bergmann, H., Jaeger, M., Yeroslaviz, A., Neumann, K., Koenig, P.-A., da Costa, C. P., Vanes, L., Kumar, V., Johnson, M., Menacho-Marquez, M., Habermann, B., Tybulewicz, V. L., Netea, M., Bustelo, X. R., & Ruland, J. (2016). Vav Proteins Are Key Regulators of Card9 Signaling for Innate Antifungal Immunity. Cell Reports, 17(10), 2572-2583. doi:10.1016/j.celrep.2016.11.018. [PubMan]