Researcher Portfolio

Surendranath, Vineeth

Max Planck Institute of Molecular Cell Biology and Genetics, Max Planck Society

Researcher Profile

Position: Max Planck Institute of Molecular Cell Biology and Genetics, Max Planck Society

Researcher ID: https://pure.mpg.de/cone/persons/resource/persons219716

External references

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Publications

: Albrecht, V., Zweiniger, C., Surendranath, V., Lang, K., Schöfl, G., Dahl, A., Winkler, S., Lange, V., Böhme, I., & Schmidt, A. H. (2017). Dual redundant sequencing strategy: Full-length gene characterisation of 1056 novel and confirmatory HLA alleles. HLA: Immune Response Genetics, 90(2), 79-87. doi:10.1111/tan.13057. [PubMan] : Karpinski, J., Hauber, I., Chemnitz, J., Schäfer, C., Paszkowski-Rogacz, M., Chakraborty, D., Beschorner, N., Hofmann-Sieber, H., Lange, U. C., Grundhoff, A., Hackmann, K., Schrock, E., Abi-Ghanem, J., Pisabarro, M. T., Surendranath, V., Schambach, A., Lindner, C., Lunzen, J. v., Hauber, J., & Buchholz, F. (2016). Directed evolution of a recombinase that excises the provirus of most HIV-1 primary isolates with high specificity. Nature biotechnology, 34(4), 401-409. [PubMan] : Jambor, H., Surendranath, V., Kalinka, A. T., Mejstrik, P., Saalfeld, S., & Tomancak, P. (2015). Systematic imaging reveals features and changing localization of mRNAs in Drosophila development. eLife, 4: e05003. [PubMan] : Wagner, I., Volkmer, M., Sharan, M., Villaveces, J. M., Oswald, F., Surendranath, V., & Habermann, B. (2014). morFeus: a web-based program to detect remotely conserved orthologs using symmetrical best hits and orthology network scoring. BMC Bioinformatics, 15: 263. [PubMan] : Surendranath, V., Theis, M., Habermann, B., & Buchholz, F. (2013). Designing efficient and specific endoribonuclease-prepared siRNAs. Methods in Molecular Biology (Clifton, N.J.), 942, 193-204. [PubMan] : Karimova, M., Abi-Ghanem, J., Berger, N., Surendranath, V., Pisabarro, M. T., & Buchholz, F. (2013). Vika/vox, a novel efficient and specific Cre/loxP-like site-specific recombination system. Nucleic Acids Research, 41(2): e37. [PubMan] : Chakraborty, D., Kappei, D., Theis, M., Nitzsche, A., Ding, L., Paszkowski-Rogacz, M., Surendranath, V., Berger, N., Schulz, H., Saar, K., Hubner, N., & Buchholz, F. (2012). Combined RNAi and localization for functionally dissecting long non-coding RNAs. Nature Methods, 9(4), 360-362. [PubMan] : Bradshaw, C. R., Surendranath, V., Henschel, R., Mueller, M. S., & Habermann, B. (2011). HMMerThread: detecting remote, functional conserved domains in entire genomes by combining relaxed sequence-database searches with fold recognition. PLoS ONE, 6(3): e17568. [PubMan] : Surendranath, V., Chusainow, J., Hauber, J., Buchholz, F., & Habermann, B. (2010). SeLOX--a locus of recombination site search tool for the detection and directed evolution of site-specific recombination systems. Nucleic Acids Research, 38(Suppl. 2), 293-298. [PubMan] : Ejsing, C. S., Sampaio, J. L., Surendranath, V., Duchoslav, E., Ekroos, K., Klemm, R. W., Simons, K., & Shevchenko, A. (2009). Global analysis of the yeast lipidome by quantitative shotgun mass spectrometry. Proceedings of the National Academy of Sciences of the United States of America, 106(7), 2136-2141. [PubMan] : Junqueira, M., Spirin, V., Balbuena, T. S., Waridel, P., Surendranath, V., Kryukov, G., Adzhubei, I., Thomas, H., Sunyaev, S., & Shevchenko, A. (2008). Separating the wheat from the chaff: unbiased filtering of background tandem mass spectra improves protein identification. Journal of Proteome Research, 7(8), 3382-3395. [PubMan] : Kittler, R., Surendranath, V., Heninger, A.-K., Slabicki, M., Theis, M., Putz, G., Franke, K., Caldarelli, A., Grabner, H., Kozak, K., Wagner, J., Rees, E., Korn, B., Frenzel, C., Sachse, C., Sönnichsen, B., Guo, J., Schelter, J., Burchard, J., Linsley, P. S., Jackson, A. L., Habermann, B., & Buchholz, F. (2007). Genome-wide resources of endoribonuclease-prepared short interfering RNAs for specific loss-of-function studies. Nature Methods, 4(4), 337-344. [PubMan] : Waridel, P., Frank, A., Thomas, H., Surendranath, V., Sunyaev, S., Pevzner, P., & Shevchenko, A. (2007). Sequence similarity-driven proteomics in organisms with unknown genomes by LC-MS/MS and automated de novo sequencing. PROTEOMICS, 7(14), 2318-2329. [PubMan] : Kittler, R., Pelletier, L., Heninger, A.-K., Slabicki, M., Theis, M., Miroslaw, L., Poser, I., Lawo, S., Grabner, H., Kozak, K., Wagner, J., Surendranath, V., Richter, C., Bowen, W., Jackson, A. L., Habermann, B., Hyman, A. A., & Buchholz, F. (2007). Genome-scale RNAi profiling of cell division in human tissue culture cells. Nature Cell Biology, 9(12), 1401-1412. [PubMan] : Schwudke, D., Hannich, J. T., Surendranath, V., Grimard, V., Moehring, T., Burton, L., Kurzchalia, T., & Shevchenko, A. (2007). Top-Down Lipidomic Screens by Multivariate Analysis of High-Resolution Survey Mass Spectra. Analytical Chemistry (Washington), 79(11), 4083-4093. [PubMan] : Wielsch, N., Thomas, H., Surendranath, V., Waridel, P., Frank, A., Pevzner, P., & Shevchenko, A. (2006). Rapid validation of protein identifications with the borderline statistical confidence via de novo sequencing and MS BLAST searches. Journal of Proteome Research, 5(9), 2448-2456. [PubMan] : Bradshaw, C. R., Surendranath, V., & Habermann, B. (2006). ProFAT: a web-based tool for the functional annotation of protein sequences. BMC Bioinformatics, 7, 466-01-466-16. [PubMan]