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  Fast and sensitive taxonomic assignment to metagenomic contigs

Mirdita, M., Steinegger, M., Breitwieser, F., Söding, J., & Levy Karin, E. (2021). Fast and sensitive taxonomic assignment to metagenomic contigs. Bioinformatics, 37(18), 3029-3031. doi:10.1093/bioinformatics/btab184.

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3348010.pdf (Publisher version), 590KB
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Mirdita, M.1, Author              
Steinegger, M., Author
Breitwieser, F., Author
Söding, J.1, Author              
Levy Karin, E.1, Author              
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1Research Group of Quantitative and Computational Biology, MPI for Biophysical Chemistry, Max Planck Society, ou_1933286              

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 Abstract: MMseqs2 taxonomy is a new tool to assign taxonomic labels to metagenomic contigs. It extracts all possible protein fragments from each contig, quickly retains those that can contribute to taxonomic annotation, assigns them with robust labels and determines the contig’s taxonomic identity by weighted voting. Its fragment extraction step is suitable for the analysis of all domains of life. MMseqs2 taxonomy is 2–18× faster than state-of-the-art tools and also contains new modules for creating and manipulating taxonomic reference databases as well as reporting and visualizing taxonomic assignments.

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Language(s): eng - English
 Dates: 2021-03-182021-09-15
 Publication Status: Published in print
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 Rev. Type: Peer
 Identifiers: DOI: 10.1093/bioinformatics/btab184
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Title: Bioinformatics
Source Genre: Journal
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Pages: - Volume / Issue: 37 (18) Sequence Number: - Start / End Page: 3029 - 3031 Identifier: -